Query 003944
Match_columns 784
No_of_seqs 324 out of 619
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 14:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 100.0 1.5E-38 3.2E-43 396.8 56.9 433 106-591 24-492 (1163)
2 TIGR02169 SMC_prok_A chromosom 100.0 9.5E-30 2.1E-34 317.8 52.2 192 107-301 24-247 (1164)
3 TIGR02168 SMC_prok_B chromosom 100.0 3E-27 6.6E-32 294.8 51.8 155 108-264 25-208 (1179)
4 KOG0933 Structural maintenance 99.9 6.5E-24 1.4E-28 246.1 46.0 152 107-264 26-213 (1174)
5 KOG0996 Structural maintenance 99.9 8.3E-22 1.8E-26 232.1 44.5 160 108-270 110-313 (1293)
6 KOG0018 Structural maintenance 99.9 3.7E-20 8.1E-25 217.1 41.0 141 107-252 26-184 (1141)
7 KOG0964 Structural maintenance 99.9 1.9E-19 4.2E-24 208.4 41.4 314 111-453 30-376 (1200)
8 PRK02224 chromosome segregatio 99.9 9.8E-19 2.1E-23 214.3 46.2 113 106-226 23-161 (880)
9 PRK03918 chromosome segregatio 99.8 1.7E-16 3.7E-21 194.5 50.0 181 108-293 25-230 (880)
10 PRK01156 chromosome segregatio 99.8 1.6E-16 3.4E-21 195.4 47.2 190 107-301 24-242 (895)
11 TIGR00606 rad50 rad50. This fa 99.8 5.1E-16 1.1E-20 197.2 44.7 372 227-619 743-1160(1311)
12 TIGR00606 rad50 rad50. This fa 99.8 3.9E-15 8.4E-20 189.2 49.8 184 108-301 30-255 (1311)
13 KOG0250 DNA repair protein RAD 99.7 1.6E-13 3.5E-18 163.3 43.2 153 106-265 62-244 (1074)
14 PHA02562 46 endonuclease subun 99.7 4E-13 8.7E-18 157.0 38.4 238 108-363 29-295 (562)
15 COG0419 SbcC ATPase involved i 99.5 1.3E-09 2.9E-14 134.6 49.5 143 107-252 26-195 (908)
16 TIGR00634 recN DNA repair prot 99.5 3.2E-11 6.9E-16 141.6 30.7 151 106-270 22-203 (563)
17 TIGR00618 sbcc exonuclease Sbc 99.4 2E-09 4.3E-14 135.0 46.6 145 107-251 27-203 (1042)
18 PRK10869 recombination and rep 99.4 6.8E-11 1.5E-15 138.3 29.7 147 107-263 23-192 (553)
19 KOG0979 Structural maintenance 99.4 2E-10 4.4E-15 135.7 32.7 148 110-264 46-210 (1072)
20 KOG0962 DNA repair protein RAD 99.4 1.6E-09 3.4E-14 132.5 37.6 121 225-348 737-857 (1294)
21 PRK10246 exonuclease subunit S 99.3 3.1E-08 6.8E-13 124.1 47.7 141 107-251 31-207 (1047)
22 TIGR02168 SMC_prok_B chromosom 99.3 7.9E-08 1.7E-12 121.0 46.7 21 717-737 1119-1139(1179)
23 TIGR02169 SMC_prok_A chromosom 99.2 7.4E-07 1.6E-11 112.6 49.3 25 277-301 230-254 (1164)
24 PRK02224 chromosome segregatio 99.2 2.6E-06 5.7E-11 105.3 50.1 69 276-344 376-446 (880)
25 TIGR03185 DNA_S_dndD DNA sulfu 99.1 6.9E-07 1.5E-11 107.0 43.1 224 108-343 30-288 (650)
26 cd03275 ABC_SMC1_euk Eukaryoti 99.1 3E-11 6.5E-16 127.4 5.3 103 107-213 23-145 (247)
27 KOG0161 Myosin class II heavy 99.1 1.4E-06 3.1E-11 111.8 46.2 181 216-417 980-1176(1930)
28 cd03273 ABC_SMC2_euk Eukaryoti 99.1 2.8E-11 6.1E-16 127.8 3.2 110 106-217 25-162 (251)
29 TIGR02680 conserved hypothetic 99.1 8.2E-07 1.8E-11 113.9 43.7 42 109-150 27-76 (1353)
30 KOG0161 Myosin class II heavy 99.1 5.7E-06 1.2E-10 106.5 47.9 141 203-348 825-974 (1930)
31 COG1196 Smc Chromosome segrega 99.0 4.2E-06 9.2E-11 106.4 45.3 57 560-625 971-1029(1163)
32 PF07888 CALCOCO1: Calcium bin 99.0 1.1E-05 2.5E-10 92.7 43.7 83 219-301 148-230 (546)
33 PRK01156 chromosome segregatio 98.9 7.6E-05 1.6E-09 92.7 50.6 92 311-407 410-503 (895)
34 PRK03918 chromosome segregatio 98.9 6.9E-05 1.5E-09 92.8 49.6 30 377-406 456-485 (880)
35 PF10174 Cast: RIM-binding pro 98.9 1.4E-05 3E-10 96.3 41.2 93 207-299 231-323 (775)
36 PF10174 Cast: RIM-binding pro 98.9 0.0002 4.3E-09 86.6 50.2 139 209-348 109-262 (775)
37 PF02463 SMC_N: RecF/RecN/SMC 98.9 8.7E-10 1.9E-14 113.7 4.0 98 107-220 25-146 (220)
38 PF00038 Filament: Intermediat 98.9 2.2E-05 4.7E-10 85.7 38.1 145 237-410 6-151 (312)
39 PRK04863 mukB cell division pr 98.9 1.3E-05 2.9E-10 102.7 41.3 59 212-270 277-335 (1486)
40 KOG4674 Uncharacterized conser 98.8 0.0001 2.2E-09 94.0 45.7 231 242-496 689-936 (1822)
41 cd03272 ABC_SMC3_euk Eukaryoti 98.8 4.5E-09 9.8E-14 110.0 5.3 104 106-213 23-150 (243)
42 PF05701 WEMBL: Weak chloropla 98.8 0.00011 2.4E-09 86.1 41.0 46 222-267 35-80 (522)
43 PF07888 CALCOCO1: Calcium bin 98.7 0.00048 1E-08 79.6 43.7 11 166-177 87-97 (546)
44 KOG0933 Structural maintenance 98.7 0.00025 5.4E-09 85.2 41.6 181 199-415 648-829 (1174)
45 PF05701 WEMBL: Weak chloropla 98.7 0.0013 2.8E-08 77.2 47.4 110 484-593 328-441 (522)
46 cd03242 ABC_RecF RecF is a rec 98.7 1.7E-08 3.7E-13 108.0 6.3 125 107-246 22-161 (270)
47 KOG0971 Microtubule-associated 98.7 0.00031 6.7E-09 83.3 40.9 39 310-348 325-363 (1243)
48 KOG4643 Uncharacterized coiled 98.7 0.00057 1.2E-08 82.1 42.0 66 513-578 477-542 (1195)
49 KOG0976 Rho/Rac1-interacting s 98.6 0.00043 9.3E-09 81.1 39.5 81 221-301 92-172 (1265)
50 KOG4674 Uncharacterized conser 98.6 0.00058 1.3E-08 87.4 44.1 99 249-348 738-836 (1822)
51 KOG0250 DNA repair protein RAD 98.6 0.0023 5E-08 78.2 44.8 217 173-417 202-438 (1074)
52 PRK00064 recF recombination pr 98.6 3.3E-07 7.1E-12 102.3 11.5 126 107-246 24-163 (361)
53 PF06160 EzrA: Septation ring 98.6 0.0023 5E-08 75.7 44.1 147 466-615 345-507 (560)
54 PF00038 Filament: Intermediat 98.6 0.00049 1.1E-08 75.2 35.7 243 310-583 54-307 (312)
55 COG0497 RecN ATPase involved i 98.5 5.8E-05 1.3E-09 87.5 28.8 149 105-267 21-196 (557)
56 PF00261 Tropomyosin: Tropomyo 98.5 0.00016 3.4E-09 76.4 29.9 63 522-591 174-236 (237)
57 PF12128 DUF3584: Protein of u 98.5 0.0035 7.7E-08 80.4 47.2 84 215-301 254-337 (1201)
58 KOG0976 Rho/Rac1-interacting s 98.5 0.0058 1.3E-07 72.1 43.7 15 738-752 652-666 (1265)
59 KOG0971 Microtubule-associated 98.5 0.00075 1.6E-08 80.2 37.0 87 215-301 270-356 (1243)
60 KOG0964 Structural maintenance 98.5 0.00073 1.6E-08 81.0 37.0 42 375-416 330-371 (1200)
61 KOG4643 Uncharacterized coiled 98.5 0.0088 1.9E-07 72.4 46.2 56 291-346 278-337 (1195)
62 KOG0977 Nuclear envelope prote 98.5 0.00028 6E-09 81.6 32.5 15 570-584 374-388 (546)
63 PRK14079 recF recombination pr 98.5 8.3E-07 1.8E-11 98.7 11.8 120 107-242 24-156 (349)
64 PRK04778 septation ring format 98.5 0.003 6.4E-08 75.0 41.8 145 467-614 350-510 (569)
65 KOG0996 Structural maintenance 98.5 0.0061 1.3E-07 74.8 44.1 14 681-694 704-718 (1293)
66 cd03277 ABC_SMC5_euk Eukaryoti 98.4 8.6E-08 1.9E-12 99.3 2.9 86 106-217 23-110 (213)
67 cd03241 ABC_RecN RecN ATPase i 98.4 8.3E-08 1.8E-12 103.1 2.8 103 106-222 21-147 (276)
68 cd03239 ABC_SMC_head The struc 98.4 1.4E-07 3.1E-12 95.1 4.1 80 108-220 24-104 (178)
69 PF00261 Tropomyosin: Tropomyo 98.4 0.00035 7.7E-09 73.7 29.4 42 469-510 173-214 (237)
70 PF12128 DUF3584: Protein of u 98.4 0.004 8.6E-08 80.0 43.9 34 68-101 243-276 (1201)
71 PF09730 BicD: Microtubule-ass 98.4 0.013 2.9E-07 70.4 45.8 94 208-301 21-114 (717)
72 PRK04778 septation ring format 98.3 0.019 4.1E-07 68.2 43.5 55 513-567 379-433 (569)
73 KOG0977 Nuclear envelope prote 98.3 0.0045 9.7E-08 71.9 36.4 64 515-578 294-361 (546)
74 PRK04863 mukB cell division pr 98.3 0.018 3.8E-07 74.9 45.3 23 108-130 29-52 (1486)
75 PF13514 AAA_27: AAA domain 98.2 0.016 3.5E-07 74.0 43.7 92 111-210 1-102 (1111)
76 KOG0994 Extracellular matrix g 98.2 0.011 2.4E-07 72.2 38.6 23 100-122 1282-1304(1758)
77 KOG0995 Centromere-associated 98.2 0.023 5.1E-07 65.6 42.8 57 385-452 423-479 (581)
78 PHA02562 46 endonuclease subun 98.2 0.0012 2.6E-08 77.7 30.0 52 515-566 342-393 (562)
79 KOG1029 Endocytic adaptor prot 98.2 0.0079 1.7E-07 70.9 34.4 38 213-250 315-353 (1118)
80 PF01576 Myosin_tail_1: Myosin 98.1 5.5E-07 1.2E-11 110.6 0.0 10 100-109 12-21 (859)
81 KOG0994 Extracellular matrix g 98.1 0.063 1.4E-06 65.9 41.7 10 68-77 1198-1207(1758)
82 COG4477 EzrA Negative regulato 98.1 0.045 9.7E-07 62.9 41.7 163 468-633 350-537 (570)
83 PF09726 Macoilin: Transmembra 98.1 0.0028 6E-08 76.4 29.8 34 380-413 488-521 (697)
84 COG5185 HEC1 Protein involved 98.1 0.014 3.1E-07 65.6 32.5 52 425-483 493-544 (622)
85 PF15070 GOLGA2L5: Putative go 98.0 0.05 1.1E-06 65.0 39.5 111 469-582 199-309 (617)
86 KOG0999 Microtubule-associated 98.0 0.056 1.2E-06 62.0 39.2 205 70-343 7-220 (772)
87 TIGR00611 recf recF protein. A 98.0 4.9E-05 1.1E-09 85.2 12.4 122 108-242 25-160 (365)
88 KOG0962 DNA repair protein RAD 98.0 0.12 2.7E-06 65.1 47.6 30 110-139 31-61 (1294)
89 PF01576 Myosin_tail_1: Myosin 98.0 1.4E-06 2.9E-11 107.2 0.0 44 101-144 203-247 (859)
90 COG1340 Uncharacterized archae 98.0 0.045 9.8E-07 59.1 38.1 104 472-579 138-241 (294)
91 KOG0995 Centromere-associated 97.9 0.091 2E-06 61.0 44.9 20 29-48 27-46 (581)
92 COG1340 Uncharacterized archae 97.9 0.056 1.2E-06 58.4 38.2 11 442-452 140-150 (294)
93 PF15070 GOLGA2L5: Putative go 97.9 0.13 2.8E-06 61.6 40.4 113 224-341 25-139 (617)
94 PF06160 EzrA: Septation ring 97.9 0.13 2.7E-06 61.3 41.3 55 514-568 376-430 (560)
95 KOG0612 Rho-associated, coiled 97.8 0.2 4.3E-06 62.5 40.6 43 233-275 492-534 (1317)
96 cd03274 ABC_SMC4_euk Eukaryoti 97.8 6E-06 1.3E-10 85.5 0.3 96 107-217 26-123 (212)
97 PRK11637 AmiB activator; Provi 97.7 0.039 8.4E-07 63.3 30.8 76 310-413 47-122 (428)
98 KOG0963 Transcription factor/C 97.7 0.12 2.6E-06 60.4 34.0 85 311-413 183-268 (629)
99 TIGR03185 DNA_S_dndD DNA sulfu 97.7 0.21 4.6E-06 60.4 38.0 33 314-346 227-259 (650)
100 PF05667 DUF812: Protein of un 97.7 0.12 2.6E-06 61.6 34.5 151 279-456 323-477 (594)
101 KOG0946 ER-Golgi vesicle-tethe 97.7 0.041 8.9E-07 65.6 29.7 97 205-301 620-716 (970)
102 KOG0946 ER-Golgi vesicle-tethe 97.7 0.036 7.8E-07 66.1 29.2 26 466-491 814-839 (970)
103 PF09726 Macoilin: Transmembra 97.6 0.055 1.2E-06 65.5 30.8 17 427-443 496-512 (697)
104 KOG4673 Transcription factor T 97.6 0.29 6.2E-06 57.7 40.9 21 620-640 813-833 (961)
105 KOG0963 Transcription factor/C 97.6 0.3 6.4E-06 57.3 40.2 33 314-346 111-143 (629)
106 COG1579 Zn-ribbon protein, pos 97.6 0.024 5.2E-07 59.8 23.5 113 225-347 14-126 (239)
107 PF05483 SCP-1: Synaptonemal c 97.6 0.33 7.1E-06 57.4 45.0 102 244-345 358-464 (786)
108 COG1195 RecF Recombinational D 97.5 0.00055 1.2E-08 76.1 11.0 109 96-220 13-136 (363)
109 KOG0612 Rho-associated, coiled 97.5 0.56 1.2E-05 58.7 39.5 9 93-101 308-316 (1317)
110 PF05667 DUF812: Protein of un 97.5 0.13 2.7E-06 61.4 30.5 84 470-554 445-528 (594)
111 KOG4673 Transcription factor T 97.4 0.45 9.8E-06 56.1 38.3 26 522-547 610-635 (961)
112 PF05622 HOOK: HOOK protein; 97.4 7.3E-05 1.6E-09 90.7 3.3 24 705-733 683-706 (713)
113 KOG1029 Endocytic adaptor prot 97.4 0.51 1.1E-05 56.4 36.3 17 107-123 233-249 (1118)
114 PF05557 MAD: Mitotic checkpoi 97.4 0.0011 2.3E-08 80.9 12.5 16 618-633 633-648 (722)
115 PF05622 HOOK: HOOK protein; 97.4 3.9E-05 8.4E-10 93.0 0.0 169 223-410 241-421 (713)
116 KOG0999 Microtubule-associated 97.4 0.46 1E-05 54.8 37.8 106 315-452 105-213 (772)
117 COG4372 Uncharacterized protei 97.3 0.39 8.5E-06 53.3 31.5 51 465-515 231-281 (499)
118 PF09730 BicD: Microtubule-ass 97.3 0.73 1.6E-05 55.9 44.5 119 221-346 27-150 (717)
119 cd03278 ABC_SMC_barmotin Barmo 97.3 9.7E-05 2.1E-09 75.7 1.9 45 108-152 24-69 (197)
120 COG0419 SbcC ATPase involved i 97.3 0.99 2.1E-05 56.8 53.3 33 215-247 316-348 (908)
121 cd03227 ABC_Class2 ABC-type Cl 97.2 0.00012 2.6E-09 72.4 1.2 31 108-138 23-54 (162)
122 KOG0980 Actin-binding protein 97.2 0.98 2.1E-05 54.9 33.6 37 377-413 362-398 (980)
123 PF09728 Taxilin: Myosin-like 97.2 0.54 1.2E-05 51.8 39.6 100 284-415 50-149 (309)
124 cd03276 ABC_SMC6_euk Eukaryoti 97.2 0.00014 2.9E-09 74.7 1.3 43 107-149 22-65 (198)
125 COG1579 Zn-ribbon protein, pos 97.2 0.17 3.7E-06 53.5 24.0 27 384-410 14-40 (239)
126 KOG0978 E3 ubiquitin ligase in 97.1 1 2.3E-05 54.1 38.1 13 77-89 166-178 (698)
127 PF10375 GRAB: GRIP-related Ar 97.1 0.00023 5E-09 45.5 1.6 18 596-613 2-19 (19)
128 PF04849 HAP1_N: HAP1 N-termin 97.1 0.17 3.8E-06 55.1 23.7 118 229-346 63-196 (306)
129 TIGR02680 conserved hypothetic 97.1 0.73 1.6E-05 60.3 33.5 82 471-552 881-963 (1353)
130 PF13555 AAA_29: P-loop contai 97.1 0.00022 4.8E-09 59.8 1.2 26 108-133 25-51 (62)
131 PRK11281 hypothetical protein; 97.0 1.6 3.5E-05 55.7 34.5 27 377-403 125-151 (1113)
132 PF04849 HAP1_N: HAP1 N-termin 97.0 0.86 1.9E-05 49.9 29.0 35 381-415 161-195 (306)
133 PF05483 SCP-1: Synaptonemal c 96.9 1.4 3.1E-05 52.3 47.5 66 278-348 241-306 (786)
134 PF13166 AAA_13: AAA domain 96.9 1.7 3.6E-05 53.0 42.5 25 108-132 18-42 (712)
135 COG4942 Membrane-bound metallo 96.9 1.1 2.4E-05 50.9 30.1 18 726-743 399-416 (420)
136 PF05557 MAD: Mitotic checkpoi 96.9 0.0051 1.1E-07 75.0 11.6 91 310-414 336-426 (722)
137 PF12718 Tropomyosin_1: Tropom 96.9 0.22 4.7E-06 48.9 20.5 33 471-503 34-66 (143)
138 KOG0980 Actin-binding protein 96.9 1.9 4.2E-05 52.5 32.2 32 312-343 412-443 (980)
139 PF12718 Tropomyosin_1: Tropom 96.8 0.29 6.4E-06 48.0 21.0 33 383-415 3-35 (143)
140 COG4372 Uncharacterized protei 96.8 1.2 2.6E-05 49.6 33.7 35 700-736 402-437 (499)
141 KOG0979 Structural maintenance 96.8 2.4 5.1E-05 52.6 32.2 61 278-344 175-235 (1072)
142 KOG4809 Rab6 GTPase-interactin 96.8 1.7 3.6E-05 50.5 35.2 76 509-590 520-597 (654)
143 PRK09039 hypothetical protein; 96.8 0.24 5.2E-06 55.4 22.3 21 377-397 78-98 (343)
144 PRK09039 hypothetical protein; 96.7 0.17 3.8E-06 56.5 21.1 11 619-629 240-250 (343)
145 PF08317 Spc7: Spc7 kinetochor 96.6 1.7 3.7E-05 48.2 28.4 32 382-413 172-203 (325)
146 PF15066 CAGE1: Cancer-associa 96.5 1.7 3.7E-05 49.6 26.2 43 377-419 394-436 (527)
147 PF15619 Lebercilin: Ciliary p 96.5 1.3 2.8E-05 45.7 23.9 18 519-536 173-190 (194)
148 KOG1003 Actin filament-coating 96.5 1.3 2.7E-05 45.4 27.2 34 382-415 6-39 (205)
149 COG4942 Membrane-bound metallo 96.4 2.5 5.4E-05 48.3 31.0 36 235-270 38-73 (420)
150 PF05010 TACC: Transforming ac 96.4 1.6 3.4E-05 45.5 27.3 31 515-545 166-196 (207)
151 PF01465 GRIP: GRIP domain; I 96.3 0.0087 1.9E-07 47.3 5.5 41 599-639 2-45 (46)
152 KOG0018 Structural maintenance 96.3 4.7 0.0001 50.4 39.7 34 576-614 517-550 (1141)
153 COG4477 EzrA Negative regulato 96.2 3.5 7.5E-05 48.1 35.2 35 77-120 27-61 (570)
154 PF14662 CCDC155: Coiled-coil 96.2 1.7 3.7E-05 44.4 27.7 19 487-505 124-142 (193)
155 cd03240 ABC_Rad50 The catalyti 96.2 0.0021 4.6E-08 66.2 1.6 41 108-148 24-66 (204)
156 cd03279 ABC_sbcCD SbcCD and ot 96.1 0.0014 3.1E-08 67.6 0.1 42 106-147 28-70 (213)
157 PF15619 Lebercilin: Ciliary p 96.1 2.1 4.4E-05 44.2 25.7 31 474-504 120-150 (194)
158 PF13476 AAA_23: AAA domain; P 96.1 0.0023 5E-08 63.9 1.4 28 107-134 20-48 (202)
159 PF09728 Taxilin: Myosin-like 96.1 3.1 6.7E-05 46.0 35.1 36 311-346 115-150 (309)
160 KOG1853 LIS1-interacting prote 96.1 1.1 2.4E-05 47.2 20.5 37 377-413 49-85 (333)
161 TIGR03007 pepcterm_ChnLen poly 96.1 1.6 3.5E-05 50.9 24.8 129 377-508 158-290 (498)
162 PF14662 CCDC155: Coiled-coil 96.0 2.1 4.6E-05 43.8 27.7 25 389-413 10-34 (193)
163 PF14915 CCDC144C: CCDC144C pr 95.9 3.2 7E-05 45.1 38.6 46 467-512 153-198 (305)
164 TIGR03007 pepcterm_ChnLen poly 95.9 1.5 3.3E-05 51.1 23.8 76 316-411 160-235 (498)
165 KOG0982 Centrosomal protein Nu 95.8 4.5 9.7E-05 45.9 29.9 160 208-409 209-368 (502)
166 PF09789 DUF2353: Uncharacteri 95.8 4 8.6E-05 45.2 26.7 32 382-413 11-42 (319)
167 TIGR01005 eps_transp_fam exopo 95.8 3.2 7E-05 51.1 26.8 77 315-411 192-268 (754)
168 PF13304 AAA_21: AAA domain; P 95.7 0.0027 5.9E-08 64.0 0.0 21 110-130 3-24 (303)
169 PRK11281 hypothetical protein; 95.7 9.7 0.00021 48.9 41.4 37 227-263 72-108 (1113)
170 PF15066 CAGE1: Cancer-associa 95.7 3.2 7E-05 47.4 23.4 167 399-592 315-486 (527)
171 TIGR01843 type_I_hlyD type I s 95.6 2.7 5.8E-05 47.4 23.7 21 569-589 249-269 (423)
172 TIGR01069 mutS2 MutS2 family p 95.6 0.42 9E-06 59.0 18.2 19 107-125 323-342 (771)
173 PLN02939 transferase, transfer 95.6 9.8 0.00021 47.9 35.4 55 289-345 199-254 (977)
174 PF10473 CENP-F_leu_zip: Leuci 95.5 2.3 5E-05 41.6 19.2 32 515-546 71-102 (140)
175 KOG0978 E3 ubiquitin ligase in 95.4 8.9 0.00019 46.5 46.1 36 533-568 561-596 (698)
176 PF05911 DUF869: Plant protein 95.3 6.9 0.00015 48.3 26.5 32 77-108 261-309 (769)
177 PRK10929 putative mechanosensi 95.2 14 0.0003 47.5 40.6 19 282-300 107-125 (1109)
178 PF09789 DUF2353: Uncharacteri 95.1 6.7 0.00015 43.4 25.6 38 540-584 191-228 (319)
179 KOG4809 Rab6 GTPase-interactin 95.1 9.2 0.0002 44.7 31.9 110 278-414 346-455 (654)
180 PF14915 CCDC144C: CCDC144C pr 95.0 6.6 0.00014 42.8 40.7 116 427-552 138-256 (305)
181 TIGR01843 type_I_hlyD type I s 95.0 7.9 0.00017 43.6 24.9 7 745-751 411-417 (423)
182 KOG1003 Actin filament-coating 94.9 5.2 0.00011 41.1 23.9 39 377-415 8-46 (205)
183 PF13514 AAA_27: AAA domain 94.9 18 0.00038 46.9 51.9 53 209-261 535-590 (1111)
184 smart00755 Grip golgin-97, Ran 94.8 0.066 1.4E-06 42.4 5.1 40 600-639 2-43 (46)
185 TIGR00634 recN DNA repair prot 94.8 10 0.00022 45.2 26.0 35 311-345 169-203 (563)
186 PRK10698 phage shock protein P 94.6 5.2 0.00011 42.1 20.5 139 200-346 10-149 (222)
187 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.6 4.5 9.8E-05 39.0 20.3 71 510-583 59-129 (132)
188 TIGR01005 eps_transp_fam exopo 94.5 5.6 0.00012 49.1 23.6 28 382-409 196-223 (754)
189 PF09755 DUF2046: Uncharacteri 94.5 9.5 0.00021 42.0 30.9 14 523-536 281-294 (310)
190 PF10473 CENP-F_leu_zip: Leuci 94.2 6.1 0.00013 38.7 20.9 18 435-452 19-36 (140)
191 PRK10869 recombination and rep 94.2 16 0.00036 43.6 27.0 34 312-345 166-199 (553)
192 COG2433 Uncharacterized conser 94.1 0.83 1.8E-05 53.7 14.0 79 467-545 424-502 (652)
193 PF06008 Laminin_I: Laminin Do 94.1 10 0.00022 40.7 29.3 73 273-345 41-115 (264)
194 TIGR02977 phageshock_pspA phag 94.0 8.5 0.00019 40.3 20.5 137 200-344 10-147 (219)
195 smart00787 Spc7 Spc7 kinetocho 93.9 13 0.00027 41.3 28.0 28 386-413 171-198 (312)
196 KOG4593 Mitotic checkpoint pro 93.9 19 0.00041 43.4 42.0 15 565-579 509-523 (716)
197 PF13851 GAS: Growth-arrest sp 93.8 9.5 0.00021 39.6 24.5 12 382-393 29-40 (201)
198 PF04012 PspA_IM30: PspA/IM30 93.7 9.3 0.0002 39.7 20.2 133 200-340 9-142 (221)
199 PF12325 TMF_TATA_bd: TATA ele 93.6 3.7 8E-05 39.2 15.3 34 470-503 28-61 (120)
200 PLN03229 acetyl-coenzyme A car 93.6 8.3 0.00018 46.9 21.4 29 90-118 266-294 (762)
201 KOG4593 Mitotic checkpoint pro 93.5 22 0.00048 42.9 45.4 19 64-82 48-66 (716)
202 PF04582 Reo_sigmaC: Reovirus 93.5 0.097 2.1E-06 57.5 5.1 133 209-346 2-134 (326)
203 TIGR03017 EpsF chain length de 93.5 17 0.00038 41.6 26.5 36 313-348 167-202 (444)
204 PF10481 CENP-F_N: Cenp-F N-te 93.5 3 6.5E-05 44.7 15.7 40 551-590 94-133 (307)
205 PF13870 DUF4201: Domain of un 93.3 10 0.00022 38.3 23.5 76 515-590 96-176 (177)
206 PF10481 CENP-F_N: Cenp-F N-te 93.3 11 0.00024 40.6 19.4 115 222-348 19-133 (307)
207 TIGR01000 bacteriocin_acc bact 93.2 21 0.00045 41.5 25.2 27 563-589 288-314 (457)
208 PRK10246 exonuclease subunit S 93.1 35 0.00077 43.9 40.6 27 313-339 619-645 (1047)
209 PF12325 TMF_TATA_bd: TATA ele 93.1 2.8 6.1E-05 40.0 13.5 9 571-579 101-109 (120)
210 KOG0249 LAR-interacting protei 93.0 16 0.00034 44.2 21.9 35 310-344 91-125 (916)
211 PF15254 CCDC14: Coiled-coil d 92.7 24 0.00051 43.1 23.1 64 389-452 389-453 (861)
212 PRK10929 putative mechanosensi 92.7 40 0.00087 43.5 42.2 26 275-300 107-132 (1109)
213 PF10168 Nup88: Nuclear pore c 92.5 3.8 8.3E-05 50.2 17.1 8 15-22 313-320 (717)
214 COG5185 HEC1 Protein involved 92.2 26 0.00057 40.4 40.1 102 221-327 257-361 (622)
215 COG1106 Predicted ATPases [Gen 92.2 0.069 1.5E-06 60.0 1.8 29 107-135 23-52 (371)
216 PF05010 TACC: Transforming ac 91.9 18 0.00039 37.8 28.9 17 570-586 186-202 (207)
217 PF13851 GAS: Growth-arrest sp 91.9 17 0.00038 37.6 25.4 105 484-591 60-168 (201)
218 PF04156 IncA: IncA protein; 91.9 5.1 0.00011 40.6 14.9 69 229-297 82-150 (191)
219 smart00787 Spc7 Spc7 kinetocho 91.8 24 0.00053 39.1 29.2 7 474-480 153-159 (312)
220 KOG4360 Uncharacterized coiled 91.8 12 0.00026 43.4 18.7 32 382-413 161-192 (596)
221 PF15397 DUF4618: Domain of un 91.8 22 0.00047 38.4 28.1 41 465-505 81-132 (258)
222 KOG1937 Uncharacterized conser 91.7 30 0.00064 39.8 32.8 37 377-413 386-422 (521)
223 PF09755 DUF2046: Uncharacteri 91.5 26 0.00056 38.7 35.2 34 221-254 27-60 (310)
224 PF10168 Nup88: Nuclear pore c 91.5 8.3 0.00018 47.4 18.4 29 382-410 687-715 (717)
225 KOG4302 Microtubule-associated 91.4 41 0.00089 40.9 32.3 189 221-413 54-259 (660)
226 COG2433 Uncharacterized conser 91.4 5.8 0.00013 46.9 16.0 79 311-407 430-508 (652)
227 TIGR03017 EpsF chain length de 91.3 32 0.00069 39.5 25.9 32 378-409 169-200 (444)
228 KOG0249 LAR-interacting protei 91.2 14 0.00031 44.5 18.9 82 466-547 164-253 (916)
229 PF10186 Atg14: UV radiation r 91.1 21 0.00046 38.2 19.5 6 683-688 200-205 (302)
230 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.1 15 0.00033 35.4 20.1 26 384-409 7-32 (132)
231 PF10146 zf-C4H2: Zinc finger- 91.1 9.6 0.00021 40.4 16.1 34 515-548 37-70 (230)
232 PF04111 APG6: Autophagy prote 91.0 4.4 9.5E-05 44.9 14.2 24 568-591 108-131 (314)
233 PF10212 TTKRSYEDQ: Predicted 90.7 41 0.00089 39.6 21.8 59 207-265 295-353 (518)
234 PF11559 ADIP: Afadin- and alp 90.6 18 0.00039 35.4 17.6 70 184-253 8-84 (151)
235 PF06008 Laminin_I: Laminin Do 90.0 31 0.00066 37.1 34.2 31 513-543 181-211 (264)
236 PLN02939 transferase, transfer 89.9 67 0.0015 40.8 30.0 74 435-511 266-342 (977)
237 PF10146 zf-C4H2: Zinc finger- 89.9 7.8 0.00017 41.1 14.2 7 719-725 188-194 (230)
238 COG3950 Predicted ATP-binding 89.5 0.18 3.9E-06 55.8 1.8 33 108-140 26-59 (440)
239 PF06818 Fez1: Fez1; InterPro 89.0 31 0.00068 35.9 20.9 58 534-591 134-192 (202)
240 PRK14737 gmk guanylate kinase; 88.9 0.3 6.6E-06 49.7 2.8 19 109-127 7-26 (186)
241 PF04111 APG6: Autophagy prote 88.7 9 0.00019 42.5 14.3 69 515-583 62-130 (314)
242 PF10186 Atg14: UV radiation r 88.5 39 0.00083 36.3 21.1 11 621-631 149-159 (302)
243 KOG4807 F-actin binding protei 88.5 49 0.0011 37.4 29.9 41 308-348 289-329 (593)
244 PF00769 ERM: Ezrin/radixin/mo 88.3 32 0.00069 36.8 17.8 31 565-595 102-132 (246)
245 KOG1937 Uncharacterized conser 87.9 58 0.0013 37.6 34.7 36 469-504 393-428 (521)
246 PF09787 Golgin_A5: Golgin sub 87.7 67 0.0014 38.1 35.2 13 627-639 444-456 (511)
247 PF06785 UPF0242: Uncharacteri 87.7 44 0.00096 37.1 18.1 32 384-415 131-162 (401)
248 COG3206 GumC Uncharacterized p 87.6 56 0.0012 37.9 20.7 29 568-596 375-403 (458)
249 KOG4438 Centromere-associated 87.4 60 0.0013 37.3 43.9 134 208-346 101-238 (446)
250 PF10498 IFT57: Intra-flagella 87.1 15 0.00032 41.5 15.0 123 208-337 232-355 (359)
251 PF15254 CCDC14: Coiled-coil d 87.0 86 0.0019 38.6 28.0 28 318-345 388-415 (861)
252 KOG4603 TBP-1 interacting prot 86.7 21 0.00045 36.0 13.8 45 459-503 73-117 (201)
253 PF05384 DegS: Sensor protein 86.7 37 0.00081 34.1 22.5 47 464-510 76-122 (159)
254 PF12795 MscS_porin: Mechanose 86.7 47 0.001 35.2 20.9 193 381-584 2-210 (240)
255 PF10498 IFT57: Intra-flagella 86.5 51 0.0011 37.3 18.8 9 183-191 76-84 (359)
256 PF10267 Tmemb_cc2: Predicted 86.5 31 0.00068 39.5 17.1 34 377-410 209-242 (395)
257 PF11559 ADIP: Afadin- and alp 86.5 34 0.00074 33.5 16.3 9 574-582 141-149 (151)
258 KOG4403 Cell surface glycoprot 86.2 26 0.00055 40.1 15.7 37 467-503 254-290 (575)
259 PF09787 Golgin_A5: Golgin sub 86.1 81 0.0017 37.4 35.2 19 222-240 117-135 (511)
260 KOG4360 Uncharacterized coiled 86.1 56 0.0012 38.3 18.6 25 388-412 160-184 (596)
261 PF13870 DUF4201: Domain of un 85.8 42 0.00091 33.8 23.3 127 427-566 7-133 (177)
262 PF09738 DUF2051: Double stran 85.7 17 0.00037 40.1 14.2 53 439-495 83-135 (302)
263 KOG1899 LAR transmembrane tyro 85.5 78 0.0017 38.0 19.6 21 482-502 241-261 (861)
264 TIGR01000 bacteriocin_acc bact 85.1 82 0.0018 36.6 25.0 21 570-590 288-308 (457)
265 KOG0804 Cytoplasmic Zn-finger 85.0 23 0.00049 40.7 14.8 31 313-343 417-447 (493)
266 PRK10884 SH3 domain-containing 84.9 15 0.00032 38.4 12.6 8 473-480 101-108 (206)
267 TIGR00630 uvra excinuclease AB 84.7 1.1 2.4E-05 56.2 5.1 115 104-221 631-800 (924)
268 KOG0982 Centrosomal protein Nu 84.5 83 0.0018 36.2 25.0 19 50-68 35-53 (502)
269 PF09304 Cortex-I_coil: Cortex 84.5 35 0.00077 31.9 15.6 8 571-578 91-98 (107)
270 PF15290 Syntaphilin: Golgi-lo 84.4 47 0.001 36.1 16.1 72 473-555 69-141 (305)
271 COG3883 Uncharacterized protei 84.3 67 0.0014 34.9 29.7 32 382-413 33-64 (265)
272 PF06005 DUF904: Protein of un 84.1 19 0.00042 31.3 11.0 25 565-589 45-69 (72)
273 PF15450 DUF4631: Domain of un 84.0 97 0.0021 36.5 38.7 40 199-241 170-209 (531)
274 PF13175 AAA_15: AAA ATPase do 84.0 0.41 8.8E-06 53.6 0.8 19 107-125 23-42 (415)
275 KOG4403 Cell surface glycoprot 84.0 87 0.0019 36.0 19.6 31 379-413 241-271 (575)
276 COG1842 PspA Phage shock prote 84.0 62 0.0014 34.3 17.4 131 201-338 11-141 (225)
277 cd03280 ABC_MutS2 MutS2 homolo 83.5 0.5 1.1E-05 48.3 1.1 20 107-126 29-49 (200)
278 COG4026 Uncharacterized protei 83.4 34 0.00073 36.0 14.1 20 557-576 189-208 (290)
279 PF11398 DUF2813: Protein of u 83.4 0.48 1E-05 53.5 1.0 39 106-146 22-61 (373)
280 cd03243 ABC_MutS_homologs The 83.1 0.53 1.2E-05 48.1 1.1 20 107-126 30-50 (202)
281 PF13166 AAA_13: AAA domain 83.0 1.2E+02 0.0027 37.0 26.9 33 473-505 364-396 (712)
282 PF07889 DUF1664: Protein of u 82.8 19 0.00041 34.7 11.4 55 214-268 36-94 (126)
283 KOG2991 Splicing regulator [RN 82.1 78 0.0017 34.0 25.5 68 514-581 240-307 (330)
284 PF07798 DUF1640: Protein of u 82.1 48 0.001 33.6 14.8 23 389-411 75-97 (177)
285 TIGR02322 phosphon_PhnN phosph 82.1 0.63 1.4E-05 46.3 1.2 24 108-131 3-27 (179)
286 PF05384 DegS: Sensor protein 82.0 59 0.0013 32.6 18.7 35 311-345 85-119 (159)
287 PF05911 DUF869: Plant protein 81.9 1.5E+02 0.0032 37.1 34.6 40 521-560 269-308 (769)
288 PF03962 Mnd1: Mnd1 family; I 81.9 42 0.0009 34.5 14.3 21 528-548 107-127 (188)
289 COG3910 Predicted ATPase [Gene 81.8 0.81 1.7E-05 47.1 1.8 32 107-138 38-70 (233)
290 cd00267 ABC_ATPase ABC (ATP-bi 81.6 0.59 1.3E-05 45.6 0.8 23 105-127 24-47 (157)
291 PF07798 DUF1640: Protein of u 81.4 64 0.0014 32.6 16.1 9 473-481 59-67 (177)
292 PRK00409 recombination and DNA 81.3 32 0.00069 42.9 15.6 24 172-195 478-502 (782)
293 COG4026 Uncharacterized protei 81.2 14 0.00031 38.6 10.5 12 602-613 212-223 (290)
294 KOG0804 Cytoplasmic Zn-finger 81.1 69 0.0015 37.0 16.6 25 152-177 110-137 (493)
295 COG4185 Uncharacterized protei 81.1 0.51 1.1E-05 47.2 0.2 40 112-156 8-48 (187)
296 PF07111 HCR: Alpha helical co 80.8 1.5E+02 0.0032 36.4 41.9 116 284-410 162-279 (739)
297 PF15294 Leu_zip: Leucine zipp 80.8 61 0.0013 35.4 15.6 146 424-584 130-278 (278)
298 KOG1853 LIS1-interacting prote 80.8 86 0.0019 33.7 22.2 13 570-582 168-180 (333)
299 PF10212 TTKRSYEDQ: Predicted 80.4 52 0.0011 38.8 15.8 69 476-544 445-514 (518)
300 PF14073 Cep57_CLD: Centrosome 80.4 72 0.0016 32.6 22.6 29 382-410 6-34 (178)
301 cd03271 ABC_UvrA_II The excisi 80.2 3.4 7.3E-05 44.6 6.0 25 106-130 21-47 (261)
302 PRK15422 septal ring assembly 80.2 30 0.00065 30.7 10.5 41 465-505 18-58 (79)
303 PF10267 Tmemb_cc2: Predicted 79.9 1.2E+02 0.0026 34.8 18.7 44 536-579 274-318 (395)
304 PF00005 ABC_tran: ABC transpo 79.7 0.55 1.2E-05 44.3 -0.1 22 106-127 11-33 (137)
305 COG1121 ZnuC ABC-type Mn/Zn tr 79.6 0.79 1.7E-05 49.1 1.0 39 89-127 6-52 (254)
306 TIGR01194 cyc_pep_trnsptr cycl 79.3 1.4 3E-05 52.4 3.0 101 104-221 366-481 (555)
307 PF06818 Fez1: Fez1; InterPro 79.3 85 0.0018 32.7 22.8 94 381-489 11-104 (202)
308 KOG1962 B-cell receptor-associ 79.0 41 0.00089 35.4 13.1 62 522-583 149-210 (216)
309 PLN03229 acetyl-coenzyme A car 78.8 1.7E+02 0.0038 36.1 25.5 34 72-105 102-143 (762)
310 PF07106 TBPIP: Tat binding pr 78.5 13 0.00028 37.2 9.2 38 465-502 72-109 (169)
311 PF05266 DUF724: Protein of un 78.4 87 0.0019 32.3 16.4 29 563-591 156-184 (190)
312 PF12777 MT: Microtubule-bindi 78.3 1.2E+02 0.0026 33.9 24.4 34 377-410 12-45 (344)
313 cd03238 ABC_UvrA The excision 78.1 0.91 2E-05 45.9 0.9 19 107-125 22-41 (176)
314 PF15290 Syntaphilin: Golgi-lo 78.0 74 0.0016 34.6 14.8 33 381-413 69-101 (305)
315 PF09304 Cortex-I_coil: Cortex 77.8 62 0.0013 30.4 15.6 32 474-505 39-70 (107)
316 cd03283 ABC_MutS-like MutS-lik 77.8 0.95 2.1E-05 46.5 0.9 19 107-125 26-45 (199)
317 KOG4603 TBP-1 interacting prot 77.1 74 0.0016 32.3 13.6 23 602-624 172-196 (201)
318 cd03262 ABC_HisP_GlnQ_permease 76.9 1 2.3E-05 46.0 0.9 21 105-125 25-46 (213)
319 cd03264 ABC_drug_resistance_li 76.8 1 2.3E-05 46.0 0.9 19 108-126 27-46 (211)
320 TIGR03608 L_ocin_972_ABC putat 76.7 1.1 2.3E-05 45.7 0.9 21 105-125 23-44 (206)
321 COG1120 FepC ABC-type cobalami 76.7 0.9 1.9E-05 48.8 0.4 25 105-129 27-52 (258)
322 KOG0239 Kinesin (KAR3 subfamil 76.6 1.4E+02 0.003 36.8 18.7 12 725-736 628-639 (670)
323 PRK15177 Vi polysaccharide exp 76.3 0.95 2.1E-05 46.8 0.4 21 106-126 13-34 (213)
324 COG1134 TagH ABC-type polysacc 76.2 0.69 1.5E-05 49.1 -0.6 43 108-150 55-98 (249)
325 TIGR01010 BexC_CtrB_KpsE polys 76.1 1.2E+02 0.0025 34.1 17.0 61 533-593 244-305 (362)
326 PF05266 DUF724: Protein of un 75.4 1E+02 0.0023 31.8 15.7 14 565-578 165-178 (190)
327 PF08826 DMPK_coil: DMPK coile 75.3 41 0.00089 28.4 9.7 45 507-551 8-52 (61)
328 COG3206 GumC Uncharacterized p 75.3 1.7E+02 0.0036 34.0 27.1 80 315-413 193-272 (458)
329 KOG0239 Kinesin (KAR3 subfamil 75.3 1.3E+02 0.0027 37.1 17.9 33 221-253 175-207 (670)
330 TIGR02673 FtsE cell division A 75.2 1 2.2E-05 46.1 0.3 23 104-126 26-49 (214)
331 PRK09841 cryptic autophosphory 75.2 1E+02 0.0022 38.1 17.6 33 377-409 264-296 (726)
332 PF11932 DUF3450: Protein of u 75.0 88 0.0019 33.3 15.0 24 523-546 62-85 (251)
333 cd03229 ABC_Class3 This class 74.8 1.3 2.8E-05 44.3 0.9 22 105-126 25-47 (178)
334 TIGR00150 HI0065_YjeE ATPase, 74.8 1.8 3.9E-05 42.0 1.9 44 86-131 4-48 (133)
335 cd03259 ABC_Carb_Solutes_like 74.6 1.3 2.8E-05 45.4 0.9 21 105-125 25-46 (213)
336 cd03224 ABC_TM1139_LivF_branch 74.6 1.3 2.7E-05 45.7 0.8 21 105-125 25-46 (222)
337 cd03255 ABC_MJ0796_Lo1CDE_FtsE 74.3 1.3 2.9E-05 45.5 0.9 22 105-126 29-51 (218)
338 KOG0243 Kinesin-like protein [ 74.2 2.6E+02 0.0057 35.8 39.1 326 221-591 404-754 (1041)
339 TIGR01189 ccmA heme ABC export 74.2 1.4 2.9E-05 44.8 0.9 22 105-126 25-47 (198)
340 PRK10584 putative ABC transpor 74.2 1.1 2.5E-05 46.3 0.4 21 105-125 35-56 (228)
341 cd03219 ABC_Mj1267_LivG_branch 74.1 1.3 2.7E-05 46.2 0.7 21 105-125 25-46 (236)
342 TIGR01978 sufC FeS assembly AT 74.0 1.4 3E-05 46.1 0.9 21 105-125 25-46 (243)
343 PF03962 Mnd1: Mnd1 family; I 74.0 1E+02 0.0023 31.6 14.5 137 178-345 12-163 (188)
344 cd03268 ABC_BcrA_bacitracin_re 74.0 1.4 3E-05 45.1 0.9 21 105-125 25-46 (208)
345 PRK10771 thiQ thiamine transpo 73.9 1.3 2.9E-05 46.1 0.8 21 105-125 24-45 (232)
346 PF06705 SF-assemblin: SF-asse 73.9 1.3E+02 0.0028 32.0 32.7 12 575-586 231-242 (247)
347 cd03261 ABC_Org_Solvent_Resist 73.8 1.4 3E-05 46.0 0.9 22 105-126 25-47 (235)
348 TIGR02211 LolD_lipo_ex lipopro 73.8 1.2 2.6E-05 45.9 0.4 22 104-125 29-51 (221)
349 cd03301 ABC_MalK_N The N-termi 73.7 1.4 3E-05 45.1 0.9 22 105-126 25-47 (213)
350 cd03290 ABCC_SUR1_N The SUR do 73.7 1.2 2.6E-05 46.0 0.3 23 105-127 26-49 (218)
351 cd03216 ABC_Carb_Monos_I This 73.6 1.4 3.1E-05 43.5 0.9 21 105-125 25-46 (163)
352 cd03298 ABC_ThiQ_thiamine_tran 73.6 1.2 2.6E-05 45.6 0.3 22 105-126 23-45 (211)
353 cd03265 ABC_DrrA DrrA is the A 73.4 1.4 3.1E-05 45.4 0.9 22 105-126 25-47 (220)
354 COG3074 Uncharacterized protei 73.4 61 0.0013 28.1 10.2 34 467-500 20-53 (79)
355 PLN03188 kinesin-12 family pro 73.2 3E+02 0.0066 36.1 38.2 13 289-301 965-977 (1320)
356 cd03245 ABCC_bacteriocin_expor 73.2 1.2 2.7E-05 45.8 0.3 23 104-126 28-51 (220)
357 PRK10078 ribose 1,5-bisphospho 73.1 1.5 3.2E-05 44.3 0.8 23 108-130 4-27 (186)
358 cd03226 ABC_cobalt_CbiO_domain 73.1 1.2 2.7E-05 45.3 0.3 21 105-125 25-46 (205)
359 PRK10908 cell division protein 73.0 1.5 3.2E-05 45.3 0.9 23 104-126 26-49 (222)
360 cd03215 ABC_Carb_Monos_II This 72.9 1.5 3.2E-05 44.0 0.8 22 105-126 25-47 (182)
361 cd03258 ABC_MetN_methionine_tr 72.8 1.5 3.3E-05 45.6 0.9 21 105-125 30-51 (233)
362 TIGR01166 cbiO cobalt transpor 72.7 1.3 2.8E-05 44.7 0.3 21 105-125 17-38 (190)
363 cd03228 ABCC_MRP_Like The MRP 72.6 1.6 3.4E-05 43.4 0.9 21 105-125 27-48 (171)
364 cd03218 ABC_YhbG The ABC trans 72.5 1.5 3.4E-05 45.4 0.9 22 105-126 25-47 (232)
365 PLN03188 kinesin-12 family pro 72.5 3.1E+02 0.0068 35.9 21.4 162 231-410 1068-1241(1320)
366 PRK11519 tyrosine kinase; Prov 72.4 1.7E+02 0.0037 36.2 18.5 33 377-409 264-296 (719)
367 TIGR02315 ABC_phnC phosphonate 72.3 1.3 2.9E-05 46.2 0.3 22 105-126 27-49 (243)
368 PRK11614 livF leucine/isoleuci 72.3 1.5 3.3E-05 45.7 0.8 21 105-125 30-51 (237)
369 cd03248 ABCC_TAP TAP, the Tran 72.3 1.3 2.9E-05 45.8 0.3 23 104-126 38-61 (226)
370 PF09738 DUF2051: Double stran 72.2 86 0.0019 34.7 14.2 36 469-504 81-116 (302)
371 cd03263 ABC_subfamily_A The AB 72.1 1.6 3.5E-05 44.9 0.9 22 105-126 27-49 (220)
372 cd03269 ABC_putative_ATPase Th 72.1 1.4 3E-05 45.1 0.4 22 105-126 25-47 (210)
373 TIGR00960 3a0501s02 Type II (G 72.1 1.3 2.9E-05 45.4 0.3 21 105-125 28-49 (216)
374 cd03222 ABC_RNaseL_inhibitor T 72.0 1.5 3.3E-05 44.4 0.7 21 104-124 23-44 (177)
375 cd03246 ABCC_Protease_Secretio 72.0 1.4 3E-05 43.9 0.4 22 105-126 27-49 (173)
376 cd03225 ABC_cobalt_CbiO_domain 71.9 1.4 3E-05 45.0 0.4 22 105-126 26-48 (211)
377 PRK13538 cytochrome c biogenes 71.9 1.6 3.5E-05 44.5 0.9 22 105-126 26-48 (204)
378 cd03293 ABC_NrtD_SsuB_transpor 71.8 1.4 3E-05 45.5 0.4 22 105-126 29-51 (220)
379 cd03292 ABC_FtsE_transporter F 71.8 1.4 3E-05 45.1 0.3 21 105-125 26-47 (214)
380 TIGR01184 ntrCD nitrate transp 71.7 1.7 3.6E-05 45.4 0.9 20 106-125 11-31 (230)
381 KOG1962 B-cell receptor-associ 71.7 61 0.0013 34.1 12.2 58 519-576 153-210 (216)
382 cd03281 ABC_MSH5_euk MutS5 hom 71.5 1.7 3.7E-05 45.2 0.9 20 107-126 30-50 (213)
383 TIGR03410 urea_trans_UrtE urea 71.5 1.7 3.6E-05 45.2 0.8 21 105-125 25-46 (230)
384 cd03260 ABC_PstB_phosphate_tra 71.2 1.5 3.2E-05 45.5 0.4 22 105-126 25-47 (227)
385 cd03223 ABCD_peroxisomal_ALDP 71.2 1.5 3.2E-05 43.6 0.3 22 105-126 26-48 (166)
386 PRK13540 cytochrome c biogenes 71.1 1.8 3.8E-05 44.1 0.9 22 105-126 26-48 (200)
387 COG4637 Predicted ATPase [Gene 71.0 2 4.4E-05 47.3 1.4 18 111-128 27-45 (373)
388 PRK10247 putative ABC transpor 71.0 1.5 3.3E-05 45.6 0.4 21 105-125 32-53 (225)
389 KOG2264 Exostosin EXT1L [Signa 71.0 32 0.00069 40.6 10.7 11 726-736 431-441 (907)
390 PF07106 TBPIP: Tat binding pr 70.8 75 0.0016 31.7 12.5 31 383-413 75-105 (169)
391 smart00534 MUTSac ATPase domai 70.7 1.8 3.8E-05 43.8 0.8 16 111-126 4-20 (185)
392 cd03267 ABC_NatA_like Similar 70.7 1.8 3.9E-05 45.4 0.9 21 105-125 46-67 (236)
393 cd03234 ABCG_White The White s 70.6 1.8 4E-05 44.8 0.9 22 105-126 32-54 (226)
394 KOG4572 Predicted DNA-binding 70.3 2.8E+02 0.0062 34.5 23.6 263 271-582 840-1108(1424)
395 PF14992 TMCO5: TMCO5 family 70.3 1.7E+02 0.0037 32.0 16.9 24 278-301 19-42 (280)
396 PF14197 Cep57_CLD_2: Centroso 70.1 62 0.0014 27.9 10.0 8 497-504 9-16 (69)
397 COG4133 CcmA ABC-type transpor 70.0 1.4 3E-05 45.3 -0.1 24 107-130 29-52 (209)
398 cd03230 ABC_DR_subfamily_A Thi 70.0 1.6 3.4E-05 43.5 0.3 21 105-125 25-46 (173)
399 cd03256 ABC_PhnC_transporter A 70.0 1.6 3.5E-05 45.5 0.3 22 105-126 26-48 (241)
400 cd03296 ABC_CysA_sulfate_impor 69.9 1.6 3.5E-05 45.6 0.3 21 105-125 27-48 (239)
401 smart00382 AAA ATPases associa 69.9 2 4.3E-05 38.9 0.9 23 110-132 6-29 (148)
402 PF04859 DUF641: Plant protein 69.8 1.1E+02 0.0025 29.7 12.8 84 242-330 41-128 (131)
403 PF12329 TMF_DNA_bd: TATA elem 69.8 62 0.0013 28.2 10.1 7 473-479 13-19 (74)
404 COG0396 sufC Cysteine desulfur 69.7 1.9 4.1E-05 45.6 0.8 24 104-127 28-51 (251)
405 PRK15422 septal ring assembly 69.7 71 0.0015 28.3 10.2 27 513-539 21-47 (79)
406 cd03253 ABCC_ATM1_transporter 69.7 2 4.2E-05 44.8 0.9 22 105-126 26-48 (236)
407 TIGR03740 galliderm_ABC gallid 69.6 2 4.3E-05 44.4 0.9 22 105-126 25-47 (223)
408 COG3074 Uncharacterized protei 69.6 75 0.0016 27.5 10.2 40 509-548 17-56 (79)
409 TIGR02770 nickel_nikD nickel i 69.5 1.6 3.5E-05 45.4 0.3 22 105-126 11-33 (230)
410 cd03214 ABC_Iron-Siderophores_ 69.5 2 4.4E-05 43.0 0.9 21 105-125 24-45 (180)
411 cd03235 ABC_Metallic_Cations A 69.5 1.6 3.5E-05 44.7 0.2 21 105-125 24-45 (213)
412 TIGR01277 thiQ thiamine ABC tr 69.4 2 4.4E-05 44.1 0.9 36 90-125 3-44 (213)
413 PF12329 TMF_DNA_bd: TATA elem 69.3 32 0.00068 30.1 8.1 66 282-347 3-70 (74)
414 PRK11629 lolD lipoprotein tran 69.3 1.7 3.7E-05 45.3 0.4 21 105-125 34-55 (233)
415 PRK10895 lipopolysaccharide AB 69.3 1.7 3.7E-05 45.5 0.4 22 105-126 28-50 (241)
416 PRK14240 phosphate transporter 69.2 1.7 3.7E-05 45.7 0.3 22 105-126 28-50 (250)
417 PRK14269 phosphate ABC transpo 69.2 1.7 3.7E-05 45.7 0.4 21 105-125 27-48 (246)
418 PF14197 Cep57_CLD_2: Centroso 69.1 59 0.0013 28.1 9.6 24 560-583 41-64 (69)
419 PRK09493 glnQ glutamine ABC tr 68.9 1.8 3.8E-05 45.4 0.3 22 105-126 26-48 (240)
420 TIGR02338 gimC_beta prefoldin, 68.9 82 0.0018 29.3 11.5 31 474-504 12-42 (110)
421 PRK11247 ssuB aliphatic sulfon 68.8 2.1 4.5E-05 45.8 0.9 22 105-126 37-59 (257)
422 PRK10419 nikE nickel transport 68.8 2 4.4E-05 45.9 0.8 22 105-126 37-59 (268)
423 cd03249 ABC_MTABC3_MDL1_MDL2 M 68.8 1.7 3.7E-05 45.3 0.3 22 105-126 28-50 (238)
424 CHL00131 ycf16 sulfate ABC tra 68.8 1.9 4.2E-05 45.3 0.7 22 104-125 31-53 (252)
425 cd03297 ABC_ModC_molybdenum_tr 68.7 1.7 3.7E-05 44.6 0.2 19 107-125 24-43 (214)
426 cd03257 ABC_NikE_OppD_transpor 68.7 1.7 3.8E-05 44.8 0.3 21 105-125 30-51 (228)
427 PF06810 Phage_GP20: Phage min 68.6 58 0.0013 32.5 10.9 14 577-590 82-95 (155)
428 cd03247 ABCC_cytochrome_bd The 68.6 2.1 4.7E-05 42.7 0.9 21 105-125 27-48 (178)
429 cd03266 ABC_NatA_sodium_export 68.5 1.8 3.9E-05 44.4 0.4 21 105-125 30-51 (218)
430 PRK11300 livG leucine/isoleuci 68.4 1.8 3.8E-05 45.7 0.2 21 105-125 30-51 (255)
431 PRK11124 artP arginine transpo 68.2 1.9 4.1E-05 45.2 0.4 21 105-125 27-48 (242)
432 KOG3091 Nuclear pore complex, 68.1 2.2E+02 0.0047 33.5 16.6 20 325-344 349-368 (508)
433 KOG0992 Uncharacterized conser 68.0 2.5E+02 0.0055 33.1 38.3 24 568-591 387-410 (613)
434 cd01380 MYSc_type_V Myosin mot 68.0 3.9 8.6E-05 50.0 3.1 104 97-206 77-228 (691)
435 PRK14255 phosphate ABC transpo 68.0 1.9 4.1E-05 45.5 0.3 22 105-126 30-52 (252)
436 PRK14251 phosphate ABC transpo 67.9 1.9 4.1E-05 45.4 0.4 22 105-126 29-51 (251)
437 TIGR02324 CP_lyasePhnL phospho 67.9 1.9 4.1E-05 44.6 0.3 22 105-126 33-55 (224)
438 PF03148 Tektin: Tektin family 67.9 2.3E+02 0.0049 32.4 37.6 33 315-347 135-167 (384)
439 PRK13547 hmuV hemin importer A 67.8 2.2 4.8E-05 46.0 0.8 22 105-126 26-48 (272)
440 PRK14245 phosphate ABC transpo 67.7 2.2 4.7E-05 45.0 0.8 22 105-126 28-50 (250)
441 cd03221 ABCF_EF-3 ABCF_EF-3 E 67.6 1.9 4.1E-05 41.8 0.2 21 105-125 25-46 (144)
442 cd01384 MYSc_type_XI Myosin mo 67.6 4.4 9.5E-05 49.5 3.4 26 97-122 79-104 (674)
443 cd03254 ABCC_Glucan_exporter_l 67.6 1.9 4.2E-05 44.6 0.3 22 105-126 28-50 (229)
444 KOG2129 Uncharacterized conser 67.6 2.4E+02 0.0051 32.5 23.1 236 201-456 84-329 (552)
445 PRK14239 phosphate transporter 67.4 2 4.3E-05 45.3 0.3 21 105-125 30-51 (252)
446 PRK14261 phosphate ABC transpo 67.3 2 4.3E-05 45.4 0.3 22 105-126 31-53 (253)
447 PRK11831 putative ABC transpor 67.3 2.3 5E-05 45.5 0.8 22 105-126 32-54 (269)
448 PRK14262 phosphate ABC transpo 67.2 2 4.3E-05 45.2 0.3 22 105-126 28-50 (250)
449 PRK13539 cytochrome c biogenes 67.2 2 4.4E-05 44.0 0.4 21 105-125 27-48 (207)
450 TIGR03411 urea_trans_UrtD urea 67.2 2.3 5.1E-05 44.4 0.9 22 105-126 27-49 (242)
451 PF10234 Cluap1: Clusterin-ass 67.2 2E+02 0.0042 31.4 19.6 39 181-228 23-61 (267)
452 PRK13541 cytochrome c biogenes 67.1 2 4.4E-05 43.5 0.4 23 105-127 25-48 (195)
453 PRK14274 phosphate ABC transpo 67.0 2.4 5.2E-05 45.0 0.9 22 105-126 37-59 (259)
454 PRK13548 hmuV hemin importer A 67.0 2 4.3E-05 45.7 0.3 22 105-126 27-49 (258)
455 PRK10361 DNA recombination pro 67.0 2.7E+02 0.0058 32.9 24.7 24 602-625 352-375 (475)
456 cd03232 ABC_PDR_domain2 The pl 67.0 2.1 4.6E-05 43.4 0.4 22 105-126 32-54 (192)
457 PTZ00014 myosin-A; Provisional 66.9 4.9 0.00011 50.0 3.7 24 97-120 174-197 (821)
458 PRK11264 putative amino-acid A 66.9 2.1 4.4E-05 45.1 0.4 21 105-125 28-49 (250)
459 PRK14253 phosphate ABC transpo 66.9 2.1 4.5E-05 45.1 0.4 22 105-126 28-50 (249)
460 PF01920 Prefoldin_2: Prefoldi 66.8 76 0.0016 28.6 10.7 34 472-505 5-38 (106)
461 TIGR00968 3a0106s01 sulfate AB 66.8 2.1 4.5E-05 44.9 0.4 22 105-126 25-47 (237)
462 PRK15056 manganese/iron transp 66.8 2 4.4E-05 46.0 0.3 21 105-125 32-53 (272)
463 PF04582 Reo_sigmaC: Reovirus 66.6 12 0.00025 41.6 6.1 19 282-300 33-51 (326)
464 TIGR00972 3a0107s01c2 phosphat 66.6 2.1 4.5E-05 45.1 0.3 22 105-126 26-48 (247)
465 PRK14244 phosphate ABC transpo 66.6 2.1 4.5E-05 45.2 0.4 22 105-126 30-52 (251)
466 PRK10253 iron-enterobactin tra 66.6 2 4.3E-05 45.8 0.2 21 105-125 32-53 (265)
467 TIGR03771 anch_rpt_ABC anchore 66.6 2.5 5.3E-05 44.0 0.9 20 106-125 6-26 (223)
468 cd03213 ABCG_EPDR ABCG transpo 66.6 2.1 4.6E-05 43.5 0.4 22 105-126 34-56 (194)
469 PF05278 PEARLI-4: Arabidopsis 66.5 96 0.0021 33.7 12.7 105 235-345 152-256 (269)
470 cd03233 ABC_PDR_domain1 The pl 66.5 2 4.4E-05 43.9 0.2 22 105-126 32-54 (202)
471 cd03250 ABCC_MRP_domain1 Domai 66.5 2.1 4.6E-05 43.6 0.4 22 104-125 29-51 (204)
472 PRK15112 antimicrobial peptide 66.4 2.1 4.6E-05 45.8 0.3 21 105-125 38-59 (267)
473 PRK10744 pstB phosphate transp 66.4 2.1 4.6E-05 45.5 0.3 21 105-125 38-59 (260)
474 cd00632 Prefoldin_beta Prefold 66.4 54 0.0012 30.2 9.6 97 310-413 6-103 (105)
475 COG3096 MukB Uncharacterized p 66.3 3.3E+02 0.0071 33.8 39.7 50 215-264 280-329 (1480)
476 PRK09841 cryptic autophosphory 66.3 1.8E+02 0.0038 36.1 16.9 8 681-688 544-551 (726)
477 PRK14268 phosphate ABC transpo 66.3 2.1 4.6E-05 45.4 0.3 22 105-126 37-59 (258)
478 PRK13639 cbiO cobalt transport 66.3 2.1 4.5E-05 46.0 0.3 22 105-126 27-49 (275)
479 PRK14247 phosphate ABC transpo 66.2 2.1 4.6E-05 45.0 0.3 21 105-125 28-49 (250)
480 TIGR03263 guanyl_kin guanylate 66.1 2.6 5.7E-05 41.8 0.9 19 108-126 3-22 (180)
481 KOG0244 Kinesin-like protein [ 66.0 3.6E+02 0.0079 34.1 23.4 15 310-324 398-412 (913)
482 PRK09984 phosphonate/organopho 66.0 2.2 4.7E-05 45.4 0.3 22 105-126 29-51 (262)
483 PRK13632 cbiO cobalt transport 66.0 2.2 4.7E-05 45.8 0.3 21 105-125 34-55 (271)
484 TIGR03864 PQQ_ABC_ATP ABC tran 66.0 2.2 4.8E-05 44.6 0.4 21 105-125 26-47 (236)
485 cd02025 PanK Pantothenate kina 65.9 2.7 5.8E-05 44.0 1.0 22 109-130 2-24 (220)
486 PRK14242 phosphate transporter 65.8 2.2 4.8E-05 45.0 0.4 22 105-126 31-53 (253)
487 PRK14266 phosphate ABC transpo 65.7 2.2 4.9E-05 44.9 0.4 22 105-126 28-50 (250)
488 PRK11701 phnK phosphonate C-P 65.6 2.2 4.8E-05 45.2 0.3 23 104-126 30-53 (258)
489 PRK14241 phosphate transporter 65.5 2.7 5.8E-05 44.6 0.9 20 105-124 29-49 (258)
490 PRK11231 fecE iron-dicitrate t 65.5 2.2 4.9E-05 45.1 0.3 20 107-126 29-49 (255)
491 COG4988 CydD ABC-type transpor 65.4 5 0.00011 47.5 3.1 93 107-224 348-470 (559)
492 TIGR01288 nodI ATP-binding ABC 65.4 2.7 5.8E-05 45.9 0.9 16 111-126 35-51 (303)
493 PRK13543 cytochrome c biogenes 65.3 2.3 4.9E-05 43.9 0.3 20 107-126 38-58 (214)
494 cd01383 MYSc_type_VIII Myosin 65.3 4.7 0.0001 49.2 3.1 123 97-224 83-263 (677)
495 PRK11248 tauB taurine transpor 65.2 2.3 5E-05 45.2 0.3 20 107-126 28-48 (255)
496 KOG3850 Predicted membrane pro 65.1 2.5E+02 0.0055 32.0 18.0 116 396-525 262-378 (455)
497 PRK09580 sufC cysteine desulfu 65.0 2.2 4.7E-05 44.8 0.1 20 107-126 28-48 (248)
498 PRK00409 recombination and DNA 64.8 2E+02 0.0043 36.1 16.9 111 467-577 504-625 (782)
499 PF06005 DUF904: Protein of un 64.8 96 0.0021 27.0 11.5 68 472-542 4-71 (72)
500 KOG4572 Predicted DNA-binding 64.8 3.6E+02 0.0078 33.7 36.0 350 203-588 873-1270(1424)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.5e-38 Score=396.82 Aligned_cols=433 Identities=23% Similarity=0.254 Sum_probs=294.8
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCC-C-------------------------cc
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSP-S-------------------------RQ 158 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p-~-------------------------r~ 158 (784)
..+.-++|||||||||| |||+||||..|+++|||++++||||+|++.++| + ||
T Consensus 24 ~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~V~l~fdN~d~~~~~~~~ei~v~Rr 103 (1163)
T COG1196 24 PGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEVELTFDNSDNTLPLEYEEISVTRR 103 (1163)
T ss_pred CCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceEEEEEEeCCCCcCCcccceEEEEEE
Confidence 34566899999999999 999999999999999999999999999998777 3 77
Q ss_pred cccccccCCCCccceeccC--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHH
Q 003944 159 HKLTAQVKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQL 233 (784)
Q Consensus 159 ~k~~~~~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l 233 (784)
++.. |. | +||+|| |+++||+++++.+||.|++|++|+||+|++|+.|.|.+||.|+ ||+..|+..+.++
T Consensus 104 i~r~----g~-S-~Y~INg~~~~~~dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea 177 (1163)
T COG1196 104 IYRD----GE-S-EYYINGEKVRLKDIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEA 177 (1163)
T ss_pred EEEc----CC-c-EEEECCcEeeHHHHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHH
Confidence 7664 66 6 899999 9999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhHhHHHH----HHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCch
Q 003944 234 RMELEQQRNKFADVQLKLQEEQRLNESFQDE----LKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDAN 309 (784)
Q Consensus 234 ~~ELe~~~ekle~l~~~LeE~~~~le~Lkee----l~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~ 309 (784)
...|+...++++++...+.+.+.+++.|+.+ .+|+.+..+....+...+..++..+..++..+..++...+.
T Consensus 178 ~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---- 253 (1163)
T COG1196 178 ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEE---- 253 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 9999999999999999999999999999997 77888877888888888899999999999999999875444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHH
Q 003944 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~EL 389 (784)
.++.++..+.....++..++.++.++..++........ .+.. ...+++..+..+...+
T Consensus 254 -~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~-~~~~--------------------~~~~le~~~~~~~~~~ 311 (1163)
T COG1196 254 -ELEELQEELEEAEKEIEELKSELEELREELEELQEELL-ELKE--------------------EIEELEGEISLLRERL 311 (1163)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--------------------HHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888887743332 1000 1124444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhchHHHHh
Q 003944 390 KETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQK 469 (784)
Q Consensus 390 eele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~~~e~lr~eL~~lEreLk~l~~~~e~l~~~n~~eI~~ 469 (784)
..+..........+..++..+......... ......++......+...+...+..+.. ....
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~~~~~~~~~e~~~~~~~--------------~~~~ 373 (1163)
T COG1196 312 EELENELEELEERLEELKEKIEALKEELEE----RETLLEELEQLLAELEEAKEELEEKLSA--------------LLEE 373 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHH--------------Hhhh
Confidence 444444444444444444444333221100 0001112222222222222222222211 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 470 SKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEE 549 (784)
Q Consensus 470 l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Elee 549 (784)
....+..++.++..+..++...+.++..++..++.++..++. +...+..+..++..+..++...+.++..+..++..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (1163)
T COG1196 374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLER---LSERLEDLKEELKELEAELEELQTELEELNEELEE 450 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 444555566666666666666666666666666655443333 44444445555555555555555555555555555
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 550 ILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 550 l~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~~ 591 (784)
+...+..+...+.+++.++..++..+..+...+..+-.++..
T Consensus 451 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 492 (1163)
T COG1196 451 LEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR 492 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444555555555544444444443
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=9.5e-30 Score=317.82 Aligned_cols=192 Identities=19% Similarity=0.170 Sum_probs=151.4
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCCC----------------------ccccccc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSPS----------------------RQHKLTA 163 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p~----------------------r~~k~~~ 163 (784)
.+.-++|||||||||| |||.||||..+.+++|+.+++|+||.|..+.+++ |+++.+
T Consensus 24 ~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~i~r~~~~~- 102 (1164)
T TIGR02169 24 GFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVTVTFKNDDGKFPDELEVVRRLKVT- 102 (1164)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEEEEEEcCCCCCCCcEEEEEEEEEc-
Confidence 4667899999999999 9999999999999999999999999843221111 333332
Q ss_pred ccCCCCccceeccC--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHHHHH
Q 003944 164 QVKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRMELE 238 (784)
Q Consensus 164 ~~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ELe 238 (784)
.+|.+| .||+|| |+..++.+++...||.|++|++|+||+++.|+.|+|.+|+.++ +|...|..++..+...|.
T Consensus 103 -~~~~~~-~~~~n~~~~~~~~~~~~l~~~~~~~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~ 180 (1164)
T TIGR02169 103 -DDGKYS-YYYLNGQRVRLSEIHDFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEFDRKKEKALEELE 180 (1164)
T ss_pred -CCCCcc-eEEECCccccHHHHHHHHHHcCCCcCcceEEecchHHHHHCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 345445 788999 9999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhHhHHHHHHhh----hhcccccHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 003944 239 QQRNKFADVQLKLQEEQRLNESFQDELKSL----KMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 239 ~~~ekle~l~~~LeE~~~~le~Lkeel~~l----e~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~ 301 (784)
.....+.++...+.+...++..++...... .+.......++..+..++..+..++..+..++.
T Consensus 181 ~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (1164)
T TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLA 247 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888775533 222223333444444555555555555555443
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.97 E-value=3e-27 Score=294.83 Aligned_cols=155 Identities=21% Similarity=0.191 Sum_probs=128.0
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCC-C-cccccccc--------------------
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSP-S-RQHKLTAQ-------------------- 164 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p-~-r~~k~~~~-------------------- 164 (784)
+.-++|||||||||| |||.||||..+++.+|+.+++|+||+|.....| . ..|..+.+
T Consensus 25 ~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~r~~ 104 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEVELVFDNSDGLLPGADYSEISITRRL 104 (1179)
T ss_pred cEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEEEEEEecCCCCCCCCCCCeEEEEEEE
Confidence 677999999999999 999999999999999999999999998743222 1 11111110
Q ss_pred -cCCCCccceeccC--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHHHHH
Q 003944 165 -VKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRMELE 238 (784)
Q Consensus 165 -~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ELe 238 (784)
..|. +.||+|| |+..++.++|...||.|+.|++|+||+|+.|+.|+|.+|+.++ +|...|..++......|.
T Consensus 105 ~~~~~--~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~ 182 (1179)
T TIGR02168 105 YRDGE--SEYFINGQPCRLKDIQDLFLDTGLGKRSYSIIEQGKISEIIEAKPEERRAIFEEAAGISKYKERRKETERKLE 182 (1179)
T ss_pred eeCCC--ceeeECCCcccHHHHHHHHhccCCCcccchheecccHHHHHcCCHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 1122 2478999 9989999999999999999999999999999999999999999 788899999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhHhHHHH
Q 003944 239 QQRNKFADVQLKLQEEQRLNESFQDE 264 (784)
Q Consensus 239 ~~~ekle~l~~~LeE~~~~le~Lkee 264 (784)
.+...+.++..++.....+...++..
T Consensus 183 r~~d~l~el~~ql~~L~~q~~~a~~~ 208 (1179)
T TIGR02168 183 RTRENLDRLEDILNELERQLKSLERQ 208 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888777777666554
No 4
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=6.5e-24 Score=246.13 Aligned_cols=152 Identities=22% Similarity=0.193 Sum_probs=132.5
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCC-----------------CCCCC-----------c
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSG-----------------DLSPS-----------R 157 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~-----------------~~~p~-----------r 157 (784)
|.--++|=|||||||| |||.||||+++..+.||+.+-||||+++- .+||- |
T Consensus 26 ~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~GQAGiTkAsVsVvFdNtdk~~SP~G~E~h~EIsVtR 105 (1174)
T KOG0933|consen 26 QFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNGQAGITKASVSVVFDNTDKARSPLGYEHHDEISVTR 105 (1174)
T ss_pred ccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcCcccceeEEEEEEecCCCcccCCCCcccCCeeEEEE
Confidence 3445799999999999 99999999999999999999999999871 55662 5
Q ss_pred ccccccccCCCCccceeccC--CccchhhchhhhccCCccccc-cccccchhHHhhhcHHHhHHHH---HHHHHHHHHHH
Q 003944 158 QHKLTAQVKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQS-SKMQGKEKELADLLEEKNRSLA---AERAAYESQTR 231 (784)
Q Consensus 158 ~~k~~~~~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn-~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~ 231 (784)
+|- ..|++ -|++|| |+.+-++++....|..-+..| ++|||.||...+|-|.+=.+++ ||---|+.+.+
T Consensus 106 qIv----~gG~~--KylINGh~a~~~~vq~lF~SVqLNvNNP~FLIMQGrITkVLNMKp~EILsMvEEAAGTrmye~kKe 179 (1174)
T KOG0933|consen 106 QIV----VGGTN--KYLINGHLAQNSKVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPSEILSMVEEAAGTRMYENKKE 179 (1174)
T ss_pred EEE----ecCce--eEEEcCeeCchhHHHHHHHHhcccCCCCceEEecccchhhhcCCcHHHHHHHHHhhcchhHHHHHH
Confidence 553 34775 599999 999999999999998877777 8999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH-HHhhHhHHHH
Q 003944 232 QLRMELEQQRNKFADVQLKLQEE-QRLNESFQDE 264 (784)
Q Consensus 232 ~l~~ELe~~~ekle~l~~~LeE~-~~~le~Lkee 264 (784)
++..-++.-+.++.+++..|++. .=++++|.++
T Consensus 180 ~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~E 213 (1174)
T KOG0933|consen 180 AAEKTIEKKETKLKEINTLLREEILPRLEKLREE 213 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999999999988763 3567777776
No 5
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=8.3e-22 Score=232.06 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=113.9
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCCC--------c------------------ccc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSPS--------R------------------QHK 160 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p~--------r------------------~~k 160 (784)
.+-+.|||||||||+ ||+|||+| .|+.-||-.++++|||++++..+=. . -|.
T Consensus 110 FtaIvGPNGSGKSNVIDsmLFVFG-fRA~kiR~~klS~LIh~S~~~~~l~SCsV~vhFq~iiD~~~~~~E~vp~s~~~It 188 (1293)
T KOG0996|consen 110 FTAIVGPNGSGKSNVIDSMLFVFG-FRASKIRSKKLSALIHKSDGHPNLQSCSVEVHFQKIIDKPGGTYEVVPDSEFTIT 188 (1293)
T ss_pred ceeeECCCCCCchHHHHHHHHHhh-hhHhHHhHHHHHHHHhccCCCCCCcceeEEEeeeeeeccCCCceeecCCCeeEEE
Confidence 456789999999999 99999998 4788899999999999876532221 1 134
Q ss_pred cccccCCCCccceeccC--CccchhhchhhhccCCccccc-cccccchhHHhhhcHHHhH----HH------HHHHHHHH
Q 003944 161 LTAQVKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQS-SKMQGKEKELADLLEEKNR----SL------AAERAAYE 227 (784)
Q Consensus 161 ~~~~~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn-~vmqgd~t~~~~m~e~err----~i------~a~~a~~e 227 (784)
+|.-.+|. | +||+|| +|..|+..+|..+||.-+--- .++||-|-.|+-|-|.--. -+ |=|-..|.
T Consensus 189 RtA~~~Ns-S-kY~Ingk~as~~~V~~lLk~~gIDleHNRFLILQGEVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~ 266 (1293)
T KOG0996|consen 189 RTAFRDNS-S-KYYINGKEASFKDVTKLLKSHGIDLEHNRFLILQGEVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYK 266 (1293)
T ss_pred ehhhhCCC-c-eEeECCccccHHHHHHHHHhcCCCCccceeeeehhhHHHHHhcCCCCCCCCcchHHHHHHHHhcccccc
Confidence 44333344 5 899999 999999999999999865422 8999999999999984333 11 14666777
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHH----HHhhhh
Q 003944 228 SQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDE----LKSLKM 270 (784)
Q Consensus 228 ~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkee----l~~le~ 270 (784)
.-|+.+..+++...+........+.-+......|+.. +.|+..
T Consensus 267 ~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~k 313 (1293)
T KOG0996|consen 267 EPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKK 313 (1293)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 7777777777777765555555544444433333332 555544
No 6
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3.7e-20 Score=217.15 Aligned_cols=141 Identities=14% Similarity=0.123 Sum_probs=116.9
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCCC-----------cccccccccCCCCcccee
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSPS-----------RQHKLTAQVKNRHAGHQL 174 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p~-----------r~~k~~~~~~~~~s~~~~ 174 (784)
+..-+.|||||||||+ |||.||||.- +..+|.+.+-|||| |...+-|. |+-.+... +|.|+ |+
T Consensus 26 ~FTaIIGPNGSGKSNlMDAISFVLGek-ss~LR~~~lkdLIy-g~~i~~~v~l~Y~~~dg~~~~F~R~I~-~G~se--Y~ 100 (1141)
T KOG0018|consen 26 RFTAIIGPNGSGKSNLMDAISFVLGEK-SSHLRVSHLKDLIY-GKPIRKPVTLKYEEGDGETRRFTRAIN-GGTSE--YM 100 (1141)
T ss_pred hceeeeCCCCCchHHHHHHHHHHhcCC-CcccccchHHHHhc-CCccCCchhheeecCCchhhhhhhhhc-CCcee--EE
Confidence 4556789999999999 9999999985 45799999999999 66655553 33333222 57776 88
Q ss_pred ccC--CccchhhchhhhccCCccccc-cccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003944 175 QNG--FSKQDGVSNGSHALQTEVVQS-SKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRMELEQQRNKFADVQ 248 (784)
Q Consensus 175 ~Ng--~~~~~~~~~l~~~~i~p~gyn-~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ELe~~~ekle~l~ 248 (784)
+|| ||..+-..-|-+.+|--.|-| .|.||||-.|+-++|.++..+. .|--+|-.+.+.++.+...+++.+...-
T Consensus 101 IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkElt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~ 180 (1141)
T KOG0018|consen 101 IDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKELTALFEEISGSIELKPEYEELKYEMAKAEETTTGNY 180 (1141)
T ss_pred EcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHh
Confidence 888 999999999999999999999 8999999999999999999998 8888999999999999999987655444
Q ss_pred HHHH
Q 003944 249 LKLQ 252 (784)
Q Consensus 249 ~~Le 252 (784)
....
T Consensus 181 ~kkk 184 (1141)
T KOG0018|consen 181 KKKK 184 (1141)
T ss_pred hhhh
Confidence 3333
No 7
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.9e-19 Score=208.44 Aligned_cols=314 Identities=22% Similarity=0.244 Sum_probs=218.7
Q ss_pred hccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCC----------------CCC--C--cccccccccCCCC
Q 003944 111 LNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGD----------------LSP--S--RQHKLTAQVKNRH 169 (784)
Q Consensus 111 ~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~----------------~~p--~--r~~k~~~~~~~~~ 169 (784)
++|-|||||||+ -||-|||+---+--.|-++.+ ||+-|++. +=| + =.+++|+-.+--
T Consensus 30 IVGrNGSGKSNFF~AIrFVLSDey~hLk~E~R~g-LlHEGsG~~V~sA~VEIvF~nsdnr~~~~k~Ev~lrRtVGlKKD- 107 (1200)
T KOG0964|consen 30 IVGRNGSGKSNFFHAIRFVLSDEYSHLKREERQG-LLHEGSGAMVMSASVEIVFDNSDNRLPRGKSEVSLRRTVGLKKD- 107 (1200)
T ss_pred EecCCCCCchhhHHHhhhhcccchhhcCHHHHhh-hhhcCCCcceEEEEEEEEEeCcccccCCCCCeEEEEEeecccch-
Confidence 689999999999 999999997666666666764 77777661 112 1 134555433332
Q ss_pred ccceeccC--CccchhhchhhhccCCc-cccccccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Q 003944 170 AGHQLQNG--FSKQDGVSNGSHALQTE-VVQSSKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRMELEQQRNK 243 (784)
Q Consensus 170 s~~~~~Ng--~~~~~~~~~l~~~~i~p-~gyn~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ELe~~~ek 243 (784)
-||+++ ||+.|+.++|-.||.+- +-|+||-||.|+.++.|-+.+|=.+. ||..-|+...+.-..-++.-..+
T Consensus 108 --eY~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~QGkI~~La~akD~eRL~LLkeVaGtrvYeerreeSlkim~ET~qK 185 (1200)
T KOG0964|consen 108 --EYFLDNKMVTKGEVVNLLESAGFSRSNPYYIVPQGKINELANAKDSERLELLKEVAGTRVYEERREESLKIMEETKQK 185 (1200)
T ss_pred --hhhcccccccHHHHHHHHHhcCcccCCCceEeechhhHHhhcCCcHHHHHHHHHhcccchhHHhHHHHHHHHHHHhhh
Confidence 477888 99999999999999975 45999999999999999999999998 99999999999988888888888
Q ss_pred HHHHHHHHHHHHHhhHhHHHH----HHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhh--hhcCCchHHHHHHHH
Q 003944 244 FADVQLKLQEEQRLNESFQDE----LKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNR--REDGDANDVVENLKR 317 (784)
Q Consensus 244 le~l~~~LeE~~~~le~Lkee----l~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~--~e~e~~~~tieeLq~ 317 (784)
-+.+...|...+.++..|+++ -.|.+++..+-..+.+.+..|+.+...++.+|...... .++......++..+.
T Consensus 186 ~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d 265 (1200)
T KOG0964|consen 186 REKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVED 265 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 888888888888899999887 45667777777888888999999999999999988741 122233356666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 003944 318 VVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERD 397 (784)
Q Consensus 318 eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e~~ 397 (784)
++..+..++.+|+..+..|..++++.....+ ++. + .+-.++-.+..+..++.--...+.
T Consensus 266 ~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t-~~~---------------k-----~kt~lel~~kdlq~~i~~n~q~r~ 324 (1200)
T KOG0964|consen 266 ESEDLKCEIKELENKLTNLREEKEQLKARET-KIS---------------K-----KKTKLELKIKDLQDQITGNEQQRN 324 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHH---------------H-----HhhhhhhhhHHHHHHhhhhhhhhh
Confidence 7777777777777777777777777766654 110 0 122334445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 398 KALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTL 453 (784)
Q Consensus 398 ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~~~e~lr~eL~~lEreLk~l~ 453 (784)
.+...+..+...+.+.+.++ .+.......+......+...|..++.....+.
T Consensus 325 ~~l~~l~~~~~ki~e~~~EL----~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~ 376 (1200)
T KOG0964|consen 325 LALHVLQKVKDKIEEKKDEL----SKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLL 376 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665555554422 11111122222223334455666655555553
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=99.87 E-value=9.8e-19 Score=214.30 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=72.8
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCC--------CC-----cccccccccCCC-Cc
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLS--------PS-----RQHKLTAQVKNR-HA 170 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~--------p~-----r~~k~~~~~~~~-~s 170 (784)
+-+.=++|||||||||| |||.|||.+...+. .++.++|+.|+.... .. |+.+.. .++. .+
T Consensus 23 ~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~~---~~~~~~~~~~~~~~~v~~~f~~~~~~~~i~r~~~~~--~~~~~~~ 97 (880)
T PRK02224 23 DGVTVIHGVNGSGKSSLLEACFFALYGSKALD---DTLDDVITIGAEEAEIELWFEHAGGEYHIERRVRLS--GDRATTA 97 (880)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCcccc---ccHHHHHhCCCCcEEEEEEEEECCEEEEEEEEEecC--CCCcccc
Confidence 45677899999999999 99999998766543 366788887654110 00 333222 1111 01
Q ss_pred cce------eccC--CccchhhchhhhccCCccccc---cccccchhHHhhhcHHHhHHHHHHHHHH
Q 003944 171 GHQ------LQNG--FSKQDGVSNGSHALQTEVVQS---SKMQGKEKELADLLEEKNRSLAAERAAY 226 (784)
Q Consensus 171 ~~~------~~Ng--~~~~~~~~~l~~~~i~p~gyn---~vmqgd~t~~~~m~e~err~i~a~~a~~ 226 (784)
.++ +.+| .....|..+| |+..+.|- +|.||+++.|+.++|.+|+.|+.....+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~ll---g~~~~~f~~~~~i~Qge~~~~l~~~p~~R~~ii~~l~~l 161 (880)
T PRK02224 98 KCVLETPEGTIDGARDVREEVTELL---RMDAEAFVNCAYVRQGEVNKLINATPSDRQDMIDDLLQL 161 (880)
T ss_pred eeEEeCCCccccChHHHHHHHHHHH---CCCHHHhcceeEeeccChHHHHcCCHHHHHHHHHHHhCC
Confidence 012 2223 2223455554 77777774 7899999999999999999999555543
No 9
>PRK03918 chromosome segregation protein; Provisional
Probab=99.83 E-value=1.7e-16 Score=194.50 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=103.9
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCC----------CCCCcccccccccCCCCccceecc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGD----------LSPSRQHKLTAQVKNRHAGHQLQN 176 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~----------~~p~r~~k~~~~~~~~~s~~~~~N 176 (784)
+.-++|||||||||| |||.|||++......|..+..|+|+.|... ..+-+-+|.. ..++.| +++.|
T Consensus 25 ~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~i~R~~-~~~~~~--~~~~~ 101 (880)
T PRK03918 25 INLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGGSGTEIELKFEKNGRKYRIVRSF-NRGESY--LKYLD 101 (880)
T ss_pred cEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCCCCEEEEEEEEECCeEEEEEEEE-cCCceE--EEECC
Confidence 566899999999999 999999997655555666667888876541 1110211111 011122 23345
Q ss_pred C-----CccchhhchhhhccCCcccc-c--cccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHhHH
Q 003944 177 G-----FSKQDGVSNGSHALQTEVVQ-S--SKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRMELEQQRNKFA 245 (784)
Q Consensus 177 g-----~~~~~~~~~l~~~~i~p~gy-n--~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ELe~~~ekle 245 (784)
| .+.+++...+.. ++..+.| | +|-||.++.|+. +|.+|+.++ .|...|+.-...++.........++
T Consensus 102 ~~~~~~~~~~~~~~~i~~-~~~~~~f~~~~~~~Qg~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (880)
T PRK03918 102 GSEVLEEGDSSVREWVER-LIPYHVFLNAIYIRQGEIDAILE-SDESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIE 179 (880)
T ss_pred CCeeecccHHHHHHHHHH-hcCHHHhceeEEEeccchHHHhc-CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 345566666665 3322222 2 456999999996 899999999 5555666666666666666665555
Q ss_pred HHHHHH---HHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHH
Q 003944 246 DVQLKL---QEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSEL 293 (784)
Q Consensus 246 ~l~~~L---eE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL 293 (784)
.+...+ ++....+..++.++..+...+.....++..+..++..+..++
T Consensus 180 ~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l 230 (880)
T PRK03918 180 RLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 333344444444444444433333333333333333333333
No 10
>PRK01156 chromosome segregation protein; Provisional
Probab=99.83 E-value=1.6e-16 Score=195.41 Aligned_cols=190 Identities=18% Similarity=0.166 Sum_probs=114.2
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCC---------CCCC----cccccccccCCCCccc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGD---------LSPS----RQHKLTAQVKNRHAGH 172 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~---------~~p~----r~~k~~~~~~~~~s~~ 172 (784)
-|.=++|||||||||| |||.|||+... |..+..|+|..|... .+.. |.+..+........ +
T Consensus 24 gi~~I~G~NGsGKSsileAI~~aL~g~~----~~~~~~~~i~~~~~~~~V~l~f~~~g~~y~i~R~~~~~~~~~~~~~-~ 98 (895)
T PRK01156 24 GINIITGKNGAGKSSIVDAIRFALFTDK----RTEKIEDMIKKGKNNLEVELEFRIGGHVYQIRRSIERRGKGSRREA-Y 98 (895)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCc----ccccHHHHhhCCCCeEEEEEEEEECCEEEEEEEEEecCCCCCCceE-E
Confidence 3677899999999999 99999998542 344567888776531 0100 33321100001122 5
Q ss_pred eeccC--Cc--cchhhchhh--hccCCccccc---cccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHHHHHHH
Q 003944 173 QLQNG--FS--KQDGVSNGS--HALQTEVVQS---SKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRMELEQQ 240 (784)
Q Consensus 173 ~~~Ng--~~--~~~~~~~l~--~~~i~p~gyn---~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ELe~~ 240 (784)
++.|| ++ ..++.+.+. -.|++|+.|. ++.||+++.|+.|+|..|+.++ .|...|..-...++..+...
T Consensus 99 ~~~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~~~~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~ 178 (895)
T PRK01156 99 IKKDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDML 178 (895)
T ss_pred EecCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccchHHHHhCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 67799 33 356677664 4688888885 4669999999999999999999 55556666555555555555
Q ss_pred HHhHHHH---HHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 003944 241 RNKFADV---QLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 241 ~ekle~l---~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~ 301 (784)
+..+..+ ...+.+....+..++.++..+.........++..+..++..+..++..+...+.
T Consensus 179 ~~ei~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~ 242 (895)
T PRK01156 179 RAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALN 242 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443333 333333344444444444444444444444555555555555555555554443
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=5.1e-16 Score=197.20 Aligned_cols=372 Identities=12% Similarity=0.126 Sum_probs=233.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcC
Q 003944 227 ESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDG 306 (784)
Q Consensus 227 e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~e 306 (784)
+.+++.++.++..++..+..+...+++....+..++.+++.++. +.+.+..+.++..++.+++.+|+.+..++...
T Consensus 743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~--- 818 (1311)
T TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGS--- 818 (1311)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 46788889999999999999999999999999999999999888 78899999999999999999999999998732
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc---CCCCCCCCcccccccccCCCCCchHHHHHHHH
Q 003944 307 DANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKI---FPDASEYPSRLDGKMVSSESFPGKEEMEQSLQ 383 (784)
Q Consensus 307 ~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L---~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie 383 (784)
+...++++++.++..++.++..+..+++.+..+.+.....+. .| ...+.+...++. + .+..+..++..++
T Consensus 819 ~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~-~Lq~ki~el~~~klkl~-~-----~l~~r~~le~~L~ 891 (1311)
T TIGR00606 819 DLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQ-HLKSKTNELKSEKLQIG-T-----NLQRRQQFEEQLV 891 (1311)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHH
Confidence 223488888888888888888887777777777777766655 44 222333333332 0 1112334444444
Q ss_pred HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH----HHHHH----HH
Q 003944 384 KLEK--------------DLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELREN----NEYQR----AQ 441 (784)
Q Consensus 384 ~Le~--------------ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~~----~e~lr----~e 441 (784)
.+.. ++..+..++.++..++.+++......+...+..++.+...+..+... .+|.. .+
T Consensus 892 el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~q 971 (1311)
T TIGR00606 892 ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDY 971 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444 44444445555555555555555555555555555555555555443 22222 44
Q ss_pred HHHHHHHHHHHHhHHHHhhhhchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-------
Q 003944 442 ILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNL--QTALGQYFAEIEAK------- 512 (784)
Q Consensus 442 L~~lEreLk~l~~~~e~l~~~n~~eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nL--q~eLeqlq~eiEa~------- 512 (784)
|..++.++..+...++.+ ..++..+..++..++.++.............+..+ +..+..+..++..+
T Consensus 972 L~~~e~el~~~~~~ie~l----e~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~ 1047 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEEC----EKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM 1047 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666666553222222 23334444444444444444443333322222222 44444444444433
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HH------HHHHHHHHHHH
Q 003944 513 --GHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGR----AN------KLEEDNAKLRL 580 (784)
Q Consensus 513 --erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~e----i~------kL~~eie~L~k 580 (784)
..++.+...+..++..+......+..++..+..++..+...|.. ..|+++..+ +. .+..|+.+|..
T Consensus 1048 ~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~ 1125 (1311)
T TIGR00606 1048 QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTELVNKDLDIYYK 1125 (1311)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655554444444444444444444333321 233333332 11 27889999999
Q ss_pred HHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHhcCChh
Q 003944 581 AVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSK 619 (784)
Q Consensus 581 aLdkAl~rl~~~~~~~~~~VDk~lv~nL~~~y~~~~~~~ 619 (784)
|||+|||+||.++|..+ +++|+.||..+|.++...
T Consensus 1126 ~~~~~~~~~~~~~~~~~----n~~~~~~w~~~~~~~~~~ 1160 (1311)
T TIGR00606 1126 TLDQAIMKFHSMKMEEI----NKIIRDLWRSTYRGQDIE 1160 (1311)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCccHHH
Confidence 99999999999999999 999999999999987644
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=3.9e-15 Score=189.24 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=108.4
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCC----------------C----cccccccc--
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSP----------------S----RQHKLTAQ-- 164 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p----------------~----r~~k~~~~-- 164 (784)
+.-++||||||||+| |||.|||.+....+.+.. ++|+.+.....+ . |.+..+..
T Consensus 30 ~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~---~~i~~~~~~~~~~~~a~V~l~F~~~~g~~~~v~R~~~~~~~~~ 106 (1311)
T TIGR00606 30 LTILVGPNGAGKTTIIECLKYICTGDFPPGTKGN---TFVHDPKVAQETDVRAQIRLQFRDVNGEECAVVRSMVCTQKTK 106 (1311)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCc---eEecCCCcCccHhhhheeEEEEEcCCCCEEEEEeeeeeeeccC
Confidence 668999999999999 999999976544443322 244332211110 0 33322100
Q ss_pred ------cCCCCccceeccC--Cccc----hh-hchhhhccCCccccc-ccc--ccchhHHhhhcHHHhHHHH---HHHHH
Q 003944 165 ------VKNRHAGHQLQNG--FSKQ----DG-VSNGSHALQTEVVQS-SKM--QGKEKELADLLEEKNRSLA---AERAA 225 (784)
Q Consensus 165 ------~~~~~s~~~~~Ng--~~~~----~~-~~~l~~~~i~p~gyn-~vm--qgd~t~~~~m~e~err~i~---a~~a~ 225 (784)
..+-+ .||.|| ++.+ |+ ..+....||.++.|+ ||+ |||++ ++-+.|.+|+.++ .|...
T Consensus 107 ~~~~~~~~~~~--~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~~~f~~vi~~~Qge~~-~~~~~~~~rk~~~d~if~~~~ 183 (1311)
T TIGR00606 107 KTEFKTLEGVI--TRYKHGEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCHQEDSN-WPLSEGKALKQKFDEIFSATR 183 (1311)
T ss_pred cccchhhhhhh--eecCCCceeeccccHHHHHHHHHHHhCCCHHHHhhceeeCCcccc-cccCChHHHHHHHHHHhhhhH
Confidence 01112 466788 5555 44 345667999999998 666 99997 4557999999998 66777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 003944 226 YESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 226 ~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~ 301 (784)
|..-...++.-......++..++..++-.+. .++....+...+.....++..+..++..++.+++.+..++.
T Consensus 184 y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~----~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~ 255 (1311)
T TIGR00606 184 YIKALETLRQVRQTQGQKVQEHQMELKYLKQ----YKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLK 255 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666666666666666665555554332 22223333333333333455555555555555555555554
No 13
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.71 E-value=1.6e-13 Score=163.35 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=99.3
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCC-----------CCC---CC---------ccccc
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSG-----------DLS---PS---------RQHKL 161 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~-----------~~~---p~---------r~~k~ 161 (784)
.-+-=++||||||||=| .|+.-|||..-+.+-||+.+-|||=.|.. +-. |. |+|+.
T Consensus 62 ~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~~A~IsItL~N~G~~Afk~eiyG~~IiIER~I~~ 141 (1074)
T KOG0250|consen 62 PRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCSSAKISITLSNSGLDAFKPEIYGNSIIIERTIRR 141 (1074)
T ss_pred CCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCcceEEEEEEecCCcccCChhhcCCeeEEEEeecc
Confidence 33445899999999999 99999999999999999999999987765 111 11 88887
Q ss_pred ccccCCCCccceeccC----CccchhhchhhhccCCccccccccccchhH--HhhhcHHHhHHHHHHHHHHHHHHHHHHH
Q 003944 162 TAQVKNRHAGHQLQNG----FSKQDGVSNGSHALQTEVVQSSKMQGKEKE--LADLLEEKNRSLAAERAAYESQTRQLRM 235 (784)
Q Consensus 162 ~~~~~~~~s~~~~~Ng----~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~--~~~m~e~err~i~a~~a~~e~ei~~l~~ 235 (784)
+ ..-||. --+.|| ..+.|+..++..++|.-++.=+||.-|-.+ +.++.|...=++. .+++. ++++..
T Consensus 142 ~--~S~~~~-~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~~p~dkYklf-mkaT~---L~qi~~ 214 (1074)
T KOG0250|consen 142 S--SSTYYL-LRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANSNPKDKYKLF-MKATQ---LEQITE 214 (1074)
T ss_pred c--cchHHH-HhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcCChHHHHHHH-HHHhH---HHHHHH
Confidence 7 222332 113467 668999999999999999987777666544 4455555544444 22221 333334
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhHhHHHHH
Q 003944 236 ELEQQRNKFADVQLKLQEEQRLNESFQDEL 265 (784)
Q Consensus 236 ELe~~~ekle~l~~~LeE~~~~le~Lkeel 265 (784)
.+...-+.++.....+......+..++.++
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i 244 (1074)
T KOG0250|consen 215 SYSEIMESLDHAKELIDLKEEEIKNLKKKI 244 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444444444444455544444444444433
No 14
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.66 E-value=4e-13 Score=156.97 Aligned_cols=238 Identities=13% Similarity=0.074 Sum_probs=131.0
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCC-----------CCCCCcccccccccCCCCccceec
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSG-----------DLSPSRQHKLTAQVKNRHAGHQLQ 175 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~-----------~~~p~r~~k~~~~~~~~~s~~~~~ 175 (784)
+.=++||||||||+| |||-|||++.+.+..+. ++++..++. +..+ -++.+.. ..+.+ .+|.
T Consensus 29 ~~~i~G~NG~GKStll~aI~~~l~G~~~~~~~~---~~~~~~~~~~~~~v~l~f~~~~~~-y~i~R~~-~~~~~--~~~~ 101 (562)
T PHA02562 29 KTLITGKNGAGKSTMLEALTFALFGKPFRDIKK---GQLINSINKKDLLVELWFEYGEKE-YYIKRGI-KPNVF--EIYC 101 (562)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCcCcCCH---HHhhccCCCCcEEEEEEEEECCEE-EEEEEec-cCCeE--EEec
Confidence 556799999999999 99999998877666554 344432111 1111 0121111 11222 3566
Q ss_pred cC--C----ccchhhchhhh-ccCCccccc-c--ccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 003944 176 NG--F----SKQDGVSNGSH-ALQTEVVQS-S--KMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRMELEQQRN 242 (784)
Q Consensus 176 Ng--~----~~~~~~~~l~~-~~i~p~gyn-~--vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ELe~~~e 242 (784)
|| + +..|+...+.. .|+.++-|- + .=||..+.+..+.+.+|+.++ .|...|+.--..++..+...+.
T Consensus 102 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f~~~~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~ 181 (562)
T PHA02562 102 NGKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPFMQLSAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQ 181 (562)
T ss_pred CCEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchhhHhcCChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 88 2 45677777777 233333321 3 337889999999999999999 4444454433334555555555
Q ss_pred hHHHHHHHHHHHHHhhHhHHHHHHhhhh----cccccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHH
Q 003944 243 KFADVQLKLQEEQRLNESFQDELKSLKM----DKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRV 318 (784)
Q Consensus 243 kle~l~~~LeE~~~~le~Lkeel~~le~----~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~e 318 (784)
+++.+...+.....++..++..+..+.. .......++..+..+...++.++..+++++.... ..++.+...
T Consensus 182 ~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~-----~~i~~~~~~ 256 (562)
T PHA02562 182 QIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV-----MDIEDPSAA 256 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccccHHHH
Confidence 5555555555555555544433333222 1223333444444444555555555555554222 134444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccc
Q 003944 319 VATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD 363 (784)
Q Consensus 319 ieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~ 363 (784)
+..++.++..++..+..++..+...+. ...|.-|...+.
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~~------~~~Cp~C~~~~~ 295 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYEK------GGVCPTCTQQIS 295 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCCCCCCcCC
Confidence 555666666666666666666655542 223555555554
No 15
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.49 E-value=1.3e-09 Score=134.62 Aligned_cols=143 Identities=17% Similarity=0.095 Sum_probs=89.1
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCC-C-------------ccccccc-ccCCCCc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSP-S-------------RQHKLTA-QVKNRHA 170 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p-~-------------r~~k~~~-~~~~~~s 170 (784)
.|-=++||||||||-| |||.|||=+...+.- +-+.-|+|++|... .. . |.++++. +.++..+
T Consensus 26 gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~-~~~~~~~i~~g~~~-~~V~l~F~~~g~~Y~i~R~~~r~~~~~~~~~~ 103 (908)
T COG0419 26 GIFLIVGPNGAGKSSILDAITFALYGKTPRLG-AFSLDDLIRAGEKS-ASVELEFEVNGKKYRIEREFRRGRGQSTGSLQ 103 (908)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc-chhhhHHHhcCCcc-EEEEEEEEECCEEEEEEeeeccccCCCccchh
Confidence 3556899999999999 999999987766555 77777888888775 22 1 3222221 1223333
Q ss_pred cceeccC----Cccchhhchhhhc-cCCccccc---cccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHHHHHH
Q 003944 171 GHQLQNG----FSKQDGVSNGSHA-LQTEVVQS---SKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRMELEQ 239 (784)
Q Consensus 171 ~~~~~Ng----~~~~~~~~~l~~~-~i~p~gyn---~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ELe~ 239 (784)
+-+.+| ++..|+....... |+.-+-|= ++=||....|+.-.|.+|..|+ -+...|+.-...+......
T Consensus 104 -~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~ 182 (908)
T COG0419 104 -IIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKE 182 (908)
T ss_pred -hcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 344555 3333444433322 23222221 4559999999999999999999 3334455555555666666
Q ss_pred HHHhHHHHHHHHH
Q 003944 240 QRNKFADVQLKLQ 252 (784)
Q Consensus 240 ~~ekle~l~~~Le 252 (784)
++.+++.++..+.
T Consensus 183 ~~~~~e~l~~~~~ 195 (908)
T COG0419 183 AKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666655
No 16
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.46 E-value=3.2e-11 Score=141.57 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=100.8
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhcccc-cccccccCCCcc---cCCCCC---------------C--CCC----ccc
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNAFRN-GNSKASSNGINI---PKGSGD---------------L--SPS----RQH 159 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~~~~-~~~ra~~~~dli---~~~~~~---------------~--~p~----r~~ 159 (784)
..+.-++|||||||||| |||.|++|.... ..+|.......| |..... . .+. |.+
T Consensus 22 ~g~~vitG~nGaGKS~ll~al~~~~g~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~~ii~R~i 101 (563)
T TIGR00634 22 RGLTVLTGETGAGKSMIIDALSLLGGQRAGASRVRSGENRAVVEGRFTTESLDDADYPALQAIELEEEDEDGEVILRRSI 101 (563)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCcCchHHHhcCCCCeEEEEEEEccCCCchHHHHHHHhcCCCcCCCCCeEEEEEEE
Confidence 35667999999999999 999999987532 333333221111 111000 0 111 344
Q ss_pred ccccccCCCCccceeccC--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHH
Q 003944 160 KLTAQVKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLR 234 (784)
Q Consensus 160 k~~~~~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~ 234 (784)
. .+|+ | .||+|| |+++++.+++. +-|.++|.+..+.-|.|..++.++ ++...+..+..++.
T Consensus 102 ~----~~gr-s-~~~iNg~~v~~~~l~~l~~--------~li~i~gQ~~~~~l~~~~~~~~lLD~~~~~~~~~~~~~~~~ 167 (563)
T TIGR00634 102 S----RDGR-S-RAYLNGKPVSASSLLEFTS--------ELLDLHGQHDQQLLFRPDEQRQLLDTFAGANEKVKAYRELY 167 (563)
T ss_pred c----CCCc-e-EEEECCEEccHHHHHHHhc--------CeEEEECchHHHHhcCHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 3 3366 4 699999 99999988864 337788999999999999999999 55556666667777
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhh
Q 003944 235 MELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKM 270 (784)
Q Consensus 235 ~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~ 270 (784)
.++...+.++.++.....+...+++.++.++++++.
T Consensus 168 ~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 168 QAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 777777777766666666666666666655555444
No 17
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=2e-09 Score=134.96 Aligned_cols=145 Identities=14% Similarity=0.012 Sum_probs=80.7
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCC-C----------CCCCC---ccccccc-ccCC---
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGS-G----------DLSPS---RQHKLTA-QVKN--- 167 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~-~----------~~~p~---r~~k~~~-~~~~--- 167 (784)
.|.-++||||||||+| |||.|||.+...+..+......-++.++ . +...- |.++... ..+|
T Consensus 27 gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~~~~~~~~~~~~~v~l~F~~~g~~y~~~r~~~~~~~~~~~~~~ 106 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLYAAPSEAAFAELEFSLGTKIYRVHRTLRCTRSHRKTEQP 106 (1042)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCccccccchhhcCCCCCeEEEEEEEECCEEEEEEEeeeeeccCCCCcch
Confidence 4666899999999999 9999999665444333221111111111 0 00000 1111110 0011
Q ss_pred C--CccceeccC----Cccchhhchhh-hccCCccccc---cccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHH
Q 003944 168 R--HAGHQLQNG----FSKQDGVSNGS-HALQTEVVQS---SKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLR 234 (784)
Q Consensus 168 ~--~s~~~~~Ng----~~~~~~~~~l~-~~~i~p~gyn---~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~ 234 (784)
+ |+.+...+| .+..++...+. --|+.++.|. ++.||+.+.|+.++|.+|+.|+ -|...|..=-..++
T Consensus 107 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F~~~~~l~Qg~~~~fl~a~~~eR~~il~~l~g~~~y~~~~~~~~ 186 (1042)
T TIGR00618 107 EQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEF 186 (1042)
T ss_pred hhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHHhhheeecccchHHHHhCCHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1 110011223 22346666454 4799999984 7789999999999999999999 55566655444455
Q ss_pred HHHHHHHHhHHHHHHHH
Q 003944 235 MELEQQRNKFADVQLKL 251 (784)
Q Consensus 235 ~ELe~~~ekle~l~~~L 251 (784)
.....++.+++.+...+
T Consensus 187 ~~~~~~~~~~~~l~~~~ 203 (1042)
T TIGR00618 187 AKKKSLHGKAELLTLRS 203 (1042)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444554554444444
No 18
>PRK10869 recombination and repair protein; Provisional
Probab=99.43 E-value=6.8e-11 Score=138.27 Aligned_cols=147 Identities=16% Similarity=0.064 Sum_probs=87.0
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhccc-ccccccccCCCc---ccCC-CC--------C---CCCC-cccccccccCCC
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFR-NGNSKASSNGIN---IPKG-SG--------D---LSPS-RQHKLTAQVKNR 168 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~-~~~~ra~~~~dl---i~~~-~~--------~---~~p~-r~~k~~~~~~~~ 168 (784)
.+.-++|||||||||| |||.|+||..+ +..+|+..-.-. +|.. .. . ...+ -.+++....+|+
T Consensus 23 glnvitGetGaGKS~ildAi~~llG~r~~~~~ir~g~~~a~Ve~~F~~~~~~~~~~~l~~~~~~~~~~~~i~R~i~~~g~ 102 (553)
T PRK10869 23 GMTVITGETGAGKSIAIDALGLCLGGRAEASMVRPGATRADLCARFSLKDTPAALRWLEDNQLEDGNECLLRRVISSDGR 102 (553)
T ss_pred CcEEEECCCCCChHHHHHHHHHHhCCCcccccccCCCCcEEEEEEEecCCChHHHHHHHhcCCCCCCeEEEEEEEecCCc
Confidence 4567999999999999 99999998542 233333221100 1110 00 0 0011 012211113466
Q ss_pred CccceeccC--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Q 003944 169 HAGHQLQNG--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRMELEQQRNK 243 (784)
Q Consensus 169 ~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ELe~~~ek 243 (784)
| -||+|| |+++++.+++... |..+| |++. ..-|.|..++.++ +|...+-.+...+..++..+..+
T Consensus 103 -s-~~~INg~~v~~~~l~~l~~~l-i~ihg-----Q~~~--~~ll~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~ 172 (553)
T PRK10869 103 -S-RGFINGTPVPLSQLRELGQLL-IQIHG-----QHAH--QLLLKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRD 172 (553)
T ss_pred -c-eEEECCeeccHHHHHHHHHhh-hheeC-----cChH--HHhcCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3 589999 9999988887655 66555 3444 4559999999999 45455666666666666666666
Q ss_pred HHHHHHHHHHHHHhhHhHHH
Q 003944 244 FADVQLKLQEEQRLNESFQD 263 (784)
Q Consensus 244 le~l~~~LeE~~~~le~Lke 263 (784)
++++...-.+...+.+.|+-
T Consensus 173 l~~l~~~~~~~~~~~d~l~f 192 (553)
T PRK10869 173 LAQHQQQSQERAARKQLLQY 192 (553)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 66555554443333333333
No 19
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.42 E-value=2e-10 Score=135.74 Aligned_cols=148 Identities=21% Similarity=0.092 Sum_probs=101.1
Q ss_pred hhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCC-----------CCCCC--cccccccccCCCCccceec
Q 003944 110 RLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSG-----------DLSPS--RQHKLTAQVKNRHAGHQLQ 175 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~-----------~~~p~--r~~k~~~~~~~~~s~~~~~ 175 (784)
-+.||||||||.| =||.-|||+.--=-=||.+.+++|=.|-. +..|. |.|-. ++. | .|.+
T Consensus 46 mIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~~g~IEI~l~~~~e~~~ItR~I~~---~k~--S-~y~i 119 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGEDEGYIEIELKDKDETLTITRLISR---DKE--S-KYFI 119 (1072)
T ss_pred eEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCccceEEEEEecCCCceEEEEEEee---cCC--c-ceee
Confidence 4679999999999 99999999988888899999999987754 33331 54432 333 5 7999
Q ss_pred cC--CccchhhchhhhccCCccccc-cccccchhHHhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 003944 176 NG--FSKQDGVSNGSHALQTEVVQS-SKMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQ 252 (784)
Q Consensus 176 Ng--~~~~~~~~~l~~~~i~p~gyn-~vmqgd~t~~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~Le 252 (784)
|| |++++|-++-++..|+-++.- +-=|-.|.+|+.++|.+.=.=. -+|==..++...-.+|...+++...+...+.
T Consensus 120 N~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eT-ekAig~~~ll~~h~eL~~lr~~e~~Le~~~~ 198 (1072)
T KOG0979|consen 120 NDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVET-EKAIGAEELLQYHIELMDLREDEKSLEDKLT 198 (1072)
T ss_pred ccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHH-HHhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999988764 6678999999999998752111 1111112244444444444444444444444
Q ss_pred HHHHhhHhHHHH
Q 003944 253 EEQRLNESFQDE 264 (784)
Q Consensus 253 E~~~~le~Lkee 264 (784)
.-...+..|+.+
T Consensus 199 ~~~~~l~~L~~~ 210 (1072)
T KOG0979|consen 199 TKTEKLNRLEDE 210 (1072)
T ss_pred HhHHHHHHHHHH
Confidence 433333333333
No 20
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.38 E-value=1.6e-09 Score=132.51 Aligned_cols=121 Identities=15% Similarity=0.232 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Q 003944 225 AYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRE 304 (784)
Q Consensus 225 ~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e 304 (784)
..+.+++.++.+|..+...+......++...+.++.+..+...+.. +-.....+.....++.....+++.+..++..
T Consensus 737 l~~~~i~e~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~~~~~~~-l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~-- 813 (1294)
T KOG0962|consen 737 LIDKEIPELEKELQEVYEELGDLSEEEEDDEKLLDTIDAAEESAET-LQTDVTVLERFLKDLKLREKEIEELVSELDS-- 813 (1294)
T ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHhcccchhHHhHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 3445666666666666666666666666666666665555444444 3334445555555555555666666555541
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 305 DGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 305 ~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
..+...++++++.+...+......++.++..+..+........+
T Consensus 814 ~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~ 857 (1294)
T KOG0962|consen 814 SVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREIS 857 (1294)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13455788888888888888888888888887777776665554
No 21
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.35 E-value=3.1e-08 Score=124.09 Aligned_cols=141 Identities=14% Similarity=0.069 Sum_probs=81.6
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccc-cCCCcccCCCC----------C-------CCCCcccccccccCC
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKAS-SNGINIPKGSG----------D-------LSPSRQHKLTAQVKN 167 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~-~~~dli~~~~~----------~-------~~p~r~~k~~~~~~~ 167 (784)
-|.-++||||||||.| |||.|||+...++.-|.. .+.+++..|+. + .+|.| .+.. .+|
T Consensus 31 ~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~~~~~v~~~F~~~~~~y~~~~~~~~-~~~~--~~~ 107 (1047)
T PRK10246 31 GLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNR-ARNQ--PDG 107 (1047)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCCcceEEEEEEEECCeEEEEEeehhh-cccC--CCC
Confidence 4567899999999999 999999998766644432 23444433332 1 01111 1111 111
Q ss_pred C-----Cccceec-cC----Cccchhhchh-hhccCCccccc---cccccchhHHhhhcHHHhHHHH---HHHHHHHHHH
Q 003944 168 R-----HAGHQLQ-NG----FSKQDGVSNG-SHALQTEVVQS---SKMQGKEKELADLLEEKNRSLA---AERAAYESQT 230 (784)
Q Consensus 168 ~-----~s~~~~~-Ng----~~~~~~~~~l-~~~~i~p~gyn---~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei 230 (784)
. .+ .|++ +| -+..++...+ .--|.+.+-|- ++-||+++.|+.+++.+|+.|+ .|...|..=-
T Consensus 108 ~~~~~~~~-l~~~~~~~~~~~~~~~v~~~i~~llgl~~~~F~~~v~l~QG~f~~fl~a~~~eR~~il~~l~g~~~y~~~~ 186 (1047)
T PRK10246 108 NLQAPRVE-LARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQIS 186 (1047)
T ss_pred ccccccce-eeEcCCCCeeccCchHHHHHHHHHhCCCHHHhhhheeeccccHHHHHhCChHHHHHHHHHHhCcHHHHHHH
Confidence 1 11 1222 33 1123333321 23466667666 6679999999999999999999 5566665444
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 003944 231 RQLRMELEQQRNKFADVQLKL 251 (784)
Q Consensus 231 ~~l~~ELe~~~ekle~l~~~L 251 (784)
..+.......+..+..+...+
T Consensus 187 ~~l~er~k~~~~~l~~l~~~l 207 (1047)
T PRK10246 187 AMVFEQHKSARTELEKLQAQA 207 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444444
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.28 E-value=7.9e-08 Score=121.04 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=11.2
Q ss_pred hhhhccCcccccccchhhhhh
Q 003944 717 ELLQRLAPLQSLGFQDRIYLL 737 (784)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~ 737 (784)
+|...+.|..+..|.+-+-.+
T Consensus 1119 E~~~~ld~~~~~~~~~~~~~~ 1139 (1179)
T TIGR02168 1119 EVDAPLDDANVERFANLLKEF 1139 (1179)
T ss_pred CccccccHHHHHHHHHHHHHh
Confidence 356666666555555444333
No 23
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.20 E-value=7.4e-07 Score=112.62 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh
Q 003944 277 IEITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 277 ~Ei~~L~~EL~ele~EL~~LqeeL~ 301 (784)
.++..+..++..+..++..+..++.
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~~ 254 (1164)
T TIGR02169 230 KEKEALERQKEAIERQLASLEEELE 254 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=99.16 E-value=2.6e-06 Score=105.32 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 276 SIEITEMRKELNGKLSELRRLQMELNRRE--DGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 276 ~~Ei~~L~~EL~ele~EL~~LqeeL~~~e--~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~ 344 (784)
...+..+..++..++.++..+...+.... .......+++++..++.+...+..++..+..+...++.++
T Consensus 376 ~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 376 REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443111 1122245566666666666666666666666666666665
No 25
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.15 E-value=6.9e-07 Score=107.00 Aligned_cols=224 Identities=16% Similarity=0.067 Sum_probs=105.3
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhccccccc-cccc-----CCCcccCCCC-------------CCCC--Cc-ccccccc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNS-KASS-----NGINIPKGSG-------------DLSP--SR-QHKLTAQ 164 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~-ra~~-----~~dli~~~~~-------------~~~p--~r-~~k~~~~ 164 (784)
+.-+.||||+|||++ +||.+||-+..+.+. |... +.++++++.. +..+ .+ ++++.-.
T Consensus 30 ~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~~~~~~~~V~l~f~~~~~~~~~~y~i~R~w~ 109 (650)
T TIGR03185 30 IILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQAGKTNPASITLTFSVVEGGKRHEYTLVRSWH 109 (650)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccCCCCCCeEEEEEEEEccCCceEEEEEEEEec
Confidence 556889999999999 999999965554432 2221 1244444321 1111 10 1111100
Q ss_pred --cCCCC-ccceeccC----CccchhhchhhhccCCccccc--cccccc-hhHHhhh--cHHHhHHHHHHHHHHHHHHHH
Q 003944 165 --VKNRH-AGHQLQNG----FSKQDGVSNGSHALQTEVVQS--SKMQGK-EKELADL--LEEKNRSLAAERAAYESQTRQ 232 (784)
Q Consensus 165 --~~~~~-s~~~~~Ng----~~~~~~~~~l~~~~i~p~gyn--~vmqgd-~t~~~~m--~e~err~i~a~~a~~e~ei~~ 232 (784)
.++.- .-+-|.+| .-.....+++. +|-|.+|- +...|- |..|++- ++.-=+.-+.+..-++. +..
T Consensus 110 ~~~k~~~~~l~v~~~~~~~~~~~~~~~~~i~--~ilp~~~~~~FfFDGE~I~~la~~~~~~~~l~~Ai~~LlGl~~-~~~ 186 (650)
T TIGR03185 110 INNKDVKEKLTVYKDDEEDDSLNDIWDEFIN--ELLPLELADLFFFDGEKIEALANPDRLASLLKEAIEVLLGLDL-IDR 186 (650)
T ss_pred CCCCCCCCcEEEEECCcccchhhHHHHHHHH--HhCCHhHHHHhcccHHHHHHHhccccchHHHHHHHHHHhCcHH-HHH
Confidence 00000 00123344 11112233333 46677664 445554 3333321 11111222244444444 566
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHH
Q 003944 233 LRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVV 312 (784)
Q Consensus 233 l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~ti 312 (784)
|...|..+..+... .........+++.++.++..+....+....++..+..++..++..+..++..+.. .|.
T Consensus 187 L~~dl~~~~~~~~~-~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~---~GG---- 258 (650)
T TIGR03185 187 LAGDLTNVLRRRKK-SELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS---EGG---- 258 (650)
T ss_pred HHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc----
Confidence 66666665543222 1223444455666666666666655555556666667777777777766666641 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 313 ENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 313 eeLq~eieeL~kei~eLe~ei~eLe~eLe~~ 343 (784)
.+....+.++.++..++.++.+....+...
T Consensus 259 -~~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 259 -DLFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233444444444444444444444433
No 26
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.15 E-value=3e-11 Score=127.41 Aligned_cols=103 Identities=15% Similarity=0.063 Sum_probs=79.6
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCC-CCC---------------cccccccccCCCC
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDL-SPS---------------RQHKLTAQVKNRH 169 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~-~p~---------------r~~k~~~~~~~~~ 169 (784)
.+.-+.|||||||||| |||.|||+.. ++.+|..+..|+|+.|.... +|+ ..++.+. ..+.+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~-~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~-~~~~~ 100 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEK-SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRII-TGGSS 100 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC-cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEE-ECCce
Confidence 3667899999999999 9999999965 56789989999999875421 222 1122221 12332
Q ss_pred ccceeccC--CccchhhchhhhccCCccccc-cccccchhHHhhhcH
Q 003944 170 AGHQLQNG--FSKQDGVSNGSHALQTEVVQS-SKMQGKEKELADLLE 213 (784)
Q Consensus 170 s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn-~vmqgd~t~~~~m~e 213 (784)
.|++|| ++..++..++...|+.++++| ++.||+|++|++|+|
T Consensus 101 --~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p 145 (247)
T cd03275 101 --SYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNP 145 (247)
T ss_pred --EEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccC
Confidence 367788 899999999999999999988 489999999999998
No 27
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.12 E-value=1.4e-06 Score=111.82 Aligned_cols=181 Identities=20% Similarity=0.298 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHH-------HHhhhhcccccHHHHHHHHHHHHh
Q 003944 216 NRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDE-------LKSLKMDKDKTSIEITEMRKELNG 288 (784)
Q Consensus 216 rr~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkee-------l~~le~~~ek~~~Ei~~L~~EL~e 288 (784)
-.++.+.+..+++.+..+...|...+++...+.......+..++.++.. .-+++...++...+...+...+.+
T Consensus 980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~ 1059 (1930)
T KOG0161|consen 980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEE 1059 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3344444444555555555555555554444444444333333333332 222333333444444444444444
Q ss_pred HHHHHHHHHHHHhhhhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCccccccc
Q 003944 289 KLSELRRLQMELNRREDG--DANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKM 366 (784)
Q Consensus 289 le~EL~~LqeeL~~~e~e--~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~ 366 (784)
+..++..++.++..++.+ .....+++++..+..+++.+++|...|.+|.++++..+.... ++
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~----------------K~ 1123 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA----------------KA 1123 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HH
Confidence 555555666666544332 222577788888888888888888888888888888887776 44
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Q 003944 367 VSSESFPGKEEMEQSLQKLEKDLKETCS-------ERDKALQELTRLKQHLIEKAQEE 417 (784)
Q Consensus 367 Ek~~~l~~keeLE~~Ie~Le~ELeele~-------e~~ka~~EL~rLr~eL~e~E~e~ 417 (784)
++ .+.+|...++.++.++++... -..+...++.+++..+.+....+
T Consensus 1124 ek-----~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~ 1176 (1930)
T KOG0161|consen 1124 ER-----QRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDH 1176 (1930)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 54 356888888888888887722 22344567777777776665444
No 28
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.11 E-value=2.8e-11 Score=127.75 Aligned_cols=110 Identities=18% Similarity=0.042 Sum_probs=80.3
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCC------------------------CCCcccc
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDL------------------------SPSRQHK 160 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~------------------------~p~r~~k 160 (784)
..+.-+.|||||||||| |||.|+||.++...+|+...+|||+.++... .|.-.+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 45667899999999999 9999999998888999999989887543200 1111111
Q ss_pred cccccCCCCccceeccC--CccchhhchhhhccCCccccc-cccccchhHHhhhcHHHhH
Q 003944 161 LTAQVKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQS-SKMQGKEKELADLLEEKNR 217 (784)
Q Consensus 161 ~~~~~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn-~vmqgd~t~~~~m~e~err 217 (784)
++-...+.+ .||+|| +...++.+.|...|+.++++. +|.||+|++|++|.+...+
T Consensus 105 r~I~~~~~~--~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~ 162 (251)
T cd03273 105 RQIVLGGTN--KYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKE 162 (251)
T ss_pred EEEEcCCce--EEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcc
Confidence 111111222 356787 778999999999999988765 9999999999999654333
No 29
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.11 E-value=8.2e-07 Score=113.87 Aligned_cols=42 Identities=17% Similarity=0.070 Sum_probs=37.0
Q ss_pred hhhccCCCCCcchh-hHHHHhhhccccc-------ccccccCCCcccCCC
Q 003944 109 SRLNGEYGLLKQNL-DATNAALNAFRNG-------NSKASSNGINIPKGS 150 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~~~~~~-------~~ra~~~~dli~~~~ 150 (784)
.=|+|||||||||| ||++|+|+-.+.+ ++|+.++.++++.|+
T Consensus 27 ~~~~G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~~r~~~~~l~~g~ 76 (1353)
T TIGR02680 27 LLLRGNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDSRKRMAWNLLLGG 76 (1353)
T ss_pred EEEECCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCccccHHHHHcCCC
Confidence 34789999999998 9999999987766 779999999999876
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.06 E-value=5.7e-06 Score=106.54 Aligned_cols=141 Identities=22% Similarity=0.250 Sum_probs=60.5
Q ss_pred cchhHHhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHH-------HHhhhhccccc
Q 003944 203 GKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDE-------LKSLKMDKDKT 275 (784)
Q Consensus 203 gd~t~~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkee-------l~~le~~~ek~ 275 (784)
|+|.-++.-+-.+- ...+.++++..++.+|...+.....+.............|..+ ...++..+...
T Consensus 825 ~kvkPLL~~~~~ee-----~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~ 899 (1930)
T KOG0161|consen 825 TKVKPLLKVTKTEE-----EMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERL 899 (1930)
T ss_pred HHHHHHHHhhhhHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555443332 3345556666666666666654444444433333333333332 22233323333
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhh--hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 276 SIEITEMRKELNGKLSELRRLQMELNR--REDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 276 ~~Ei~~L~~EL~ele~EL~~LqeeL~~--~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
..+...+..++.++..++...++.-.. ++.....+.+..+...++.+...+..+..+...++..+..++.+..
T Consensus 900 ~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~ 974 (1930)
T KOG0161|consen 900 RAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEIN 974 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443332210 0011111344444444454444444455555555555544444433
No 31
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.03 E-value=4.2e-06 Score=106.36 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHh-cCChh-HHHHHH
Q 003944 560 MLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQ-RNHSK-EVLDLM 625 (784)
Q Consensus 560 ~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~~~~~~~~~~VDk~lv~nL~~~y~~-~~~~~-evL~Li 625 (784)
+|...+.++..+..+...+..+.+.....+ ..+|+.. ++.|...|. -+..+ .|+..|
T Consensus 971 e~e~~~~r~~~l~~~~~dl~~a~~~l~~~i--------~~~d~~~-~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 971 EYEEVEERYEELKSQREDLEEAKEKLLEVI--------EELDKEK-RERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 455555556666666666555554443333 3444444 444444444 45555 666665
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.02 E-value=1.1e-05 Score=92.75 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHH
Q 003944 219 LAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQM 298 (784)
Q Consensus 219 i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~Lqe 298 (784)
+..-+.++-.....|+.+....+.+++.++..|.........|+.+.+.+.........+...|..+..+....|..|+.
T Consensus 148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEe 227 (546)
T PF07888_consen 148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEE 227 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555556666666666666666666666676666666555556666666666666666666666666
Q ss_pred HHh
Q 003944 299 ELN 301 (784)
Q Consensus 299 eL~ 301 (784)
++.
T Consensus 228 di~ 230 (546)
T PF07888_consen 228 DIK 230 (546)
T ss_pred HHH
Confidence 654
No 33
>PRK01156 chromosome segregation protein; Provisional
Probab=98.94 E-value=7.6e-05 Score=92.75 Aligned_cols=92 Identities=12% Similarity=0.140 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC--CCCCCCCcccccccccCCCCCchHHHHHHHHHHHHH
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIF--PDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKD 388 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~--~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~E 388 (784)
.++++...++.+.+++..+..++.++...+..++.... .|. +.|--|...+..+... . -...+...+..++.+
T Consensus 410 ~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~-~l~~~~~Cp~c~~~~~~e~~~--e--~i~~~~~~i~~l~~~ 484 (895)
T PRK01156 410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNME-MLNGQSVCPVCGTTLGEEKSN--H--IINHYNEKKSRLEEK 484 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCCCCCCCcCChhhHH--H--HHHHHHHHHHHHHHH
Confidence 45667777777888888888888888877777665433 222 3333333333200000 0 011344445555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003944 389 LKETCSERDKALQELTRLK 407 (784)
Q Consensus 389 Leele~e~~ka~~EL~rLr 407 (784)
+.++..++..+..++..+.
T Consensus 485 i~~l~~~~~~l~~~~~~~~ 503 (895)
T PRK01156 485 IREIEIEVKDIDEKIVDLK 503 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444443
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=98.93 E-value=6.9e-05 Score=92.76 Aligned_cols=30 Identities=37% Similarity=0.507 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQELTRL 406 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL~rL 406 (784)
.++..+..++.++..+..++..+..++..+
T Consensus 456 ~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666655555555555544
No 35
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.92 E-value=1.4e-05 Score=96.33 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=51.8
Q ss_pred HHhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHH
Q 003944 207 ELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKEL 286 (784)
Q Consensus 207 ~~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL 286 (784)
..|+|-+.+...+-..+..++.++..++..+.......+.....++..+.....++.+++.+...+.....++..+..++
T Consensus 231 ~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l 310 (775)
T PF10174_consen 231 TVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRL 310 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566555555555555555566666655555555555555556666666666666666666665555555555555555
Q ss_pred HhHHHHHHHHHHH
Q 003944 287 NGKLSELRRLQME 299 (784)
Q Consensus 287 ~ele~EL~~Lqee 299 (784)
..+.++.......
T Consensus 311 ~~~~~~~~d~r~h 323 (775)
T PF10174_consen 311 ETLEEQDSDMRQH 323 (775)
T ss_pred HHHHhhHHHHHHH
Confidence 5544444443333
No 36
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.91 E-value=0.0002 Score=86.60 Aligned_cols=139 Identities=22% Similarity=0.267 Sum_probs=79.3
Q ss_pred hhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHh
Q 003944 209 ADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNG 288 (784)
Q Consensus 209 ~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~e 288 (784)
.+++.+.-..+-+-.-....++..++..++.....++.++..+......+..|.+.|...-..-+ ....-......+.+
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~-~~~~~~~~~~~~~~ 187 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAE-AEEEDNEALRRIRE 187 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc-chhhhhHHHHHHHH
Confidence 45555555555444444455555555566666666666666666655666666665532222111 11122233334555
Q ss_pred HHHHHHHHHHHHhhhhcCC---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 289 KLSELRRLQMELNRREDGD---------------ANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 289 le~EL~~LqeeL~~~e~e~---------------~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
++..+..++..+..++... ....-..++..|+.....+..+++.+..++.+|..++....
T Consensus 188 ~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~ 262 (775)
T PF10174_consen 188 AEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGE 262 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5555555555553222211 11122468889999999999999999999999999976543
No 37
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.90 E-value=8.7e-10 Score=113.66 Aligned_cols=98 Identities=20% Similarity=0.065 Sum_probs=69.0
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccC-CCCCCCCC--------------------cccccccc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPK-GSGDLSPS--------------------RQHKLTAQ 164 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~-~~~~~~p~--------------------r~~k~~~~ 164 (784)
.+.-++|||||||||| |||.||||....+.+|...+.++|+. +.....+. -.+.....
T Consensus 25 ~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~~~~~i~r~~~ 104 (220)
T PF02463_consen 25 GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDKKEIEISRRID 104 (220)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSSSEEEEEEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566899999999999 99999999999999999999999987 22211111 01111111
Q ss_pred cCCCCccceeccC--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH
Q 003944 165 VKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA 220 (784)
Q Consensus 165 ~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~ 220 (784)
.++.. .|++|| ++..++.+++...++.|+ .||.+|++.+.
T Consensus 105 ~~~~~--~~~in~~~~~~~~~~~~l~~~~i~~~--------------~lSgGEk~~~~ 146 (220)
T PF02463_consen 105 RKGRS--EYKINGKKVRLKDLEELLPEVGISPE--------------FLSGGEKSLVA 146 (220)
T ss_dssp TTS-E--EEEETTEEE-HHHHHHHHHCTTTTTT--------------GS-HHHHHHHH
T ss_pred ccccc--cccccccccccccccccccccccccc--------------ccccccccccc
Confidence 23443 589999 999999999999999998 88999988766
No 38
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.89 E-value=2.2e-05 Score=85.69 Aligned_cols=145 Identities=21% Similarity=0.298 Sum_probs=64.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcc-cccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHH
Q 003944 237 LEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDK-DKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENL 315 (784)
Q Consensus 237 Le~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~-ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeL 315 (784)
|..+-.++...-.++...+..+..|..++..+.... .....-...+..++.++...|+.+..+....+. .++.+
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~-----e~~~l 80 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLEL-----EIDNL 80 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhh-----hhhhH
Confidence 333333444444444444445555555555544432 122223344455666666666655555543322 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 003944 316 KRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSE 395 (784)
Q Consensus 316 q~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e 395 (784)
+..++.+.............++.++..++.... .. ...+.+++..++.++.++..+
T Consensus 81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld----------------~~-----~~~r~~le~~i~~L~eEl~fl--- 136 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERKDLEEELESLRKDLD----------------EE-----TLARVDLENQIQSLKEELEFL--- 136 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HH-----HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------------hh-----hhhHhHHHHHHHHHHHHHHHH---
Confidence 444444444444444444445555544444333 00 001235666666666666655
Q ss_pred HHHHHHHHHHHHHHH
Q 003944 396 RDKALQELTRLKQHL 410 (784)
Q Consensus 396 ~~ka~~EL~rLr~eL 410 (784)
+.....++..|+..+
T Consensus 137 ~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 137 KQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHTTSTT-
T ss_pred Hhhhhhhhhhhhhcc
Confidence 333445555555544
No 39
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.88 E-value=1.3e-05 Score=102.71 Aligned_cols=59 Identities=10% Similarity=0.170 Sum_probs=51.5
Q ss_pred cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhh
Q 003944 212 LEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKM 270 (784)
Q Consensus 212 ~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~ 270 (784)
.+.+||.++.-.+.+..++.+++..|+..+.++.++...+.+...++..|+.+......
T Consensus 277 ~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 277 HANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999955577889999999999999999999999999999999999998554444
No 40
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.83 E-value=0.0001 Score=94.05 Aligned_cols=231 Identities=19% Similarity=0.258 Sum_probs=123.9
Q ss_pred HhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHh--hhhcCCchHHHHHHHHHH
Q 003944 242 NKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN--RREDGDANDVVENLKRVV 319 (784)
Q Consensus 242 ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~--~~e~e~~~~tieeLq~ei 319 (784)
++++.+..-++-.+..++.|.+...++...+-+....+..+..+|......+..+..++. +.+..-...+-..|..+.
T Consensus 689 ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~ 768 (1822)
T KOG4674|consen 689 EKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQEL 768 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555556666666666666666666664 222222334556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 320 ATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKA 399 (784)
Q Consensus 320 eeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e~~ka 399 (784)
+.|..+...|...+..|+........... . .+..|+.+|..|..++..+......-
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~------------------~------~k~~~e~~i~eL~~el~~lk~klq~~ 824 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEM------------------A------TKDKCESRIKELERELQKLKKKLQEK 824 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655554433 1 24467777777777777776665555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh--------ch
Q 003944 400 LQELTRLKQHLIEKAQEESEKMDEDSKI-------IEELRENNEYQRAQILHLENVLKQTLAKQEEFKMM--------NH 464 (784)
Q Consensus 400 ~~EL~rLr~eL~e~E~e~qe~ld~~sk~-------I~EL~~~~e~lr~eL~~lEreLk~l~~~~e~l~~~--------n~ 464 (784)
..++..+...+.-.-..++..++..... +.......+.+..++..+++.++....+...+... ..
T Consensus 825 ~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~ 904 (1822)
T KOG4674|consen 825 SSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILE 904 (1822)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhh
Confidence 5555555555443333333333322222 22222224445567777777777776665555421 12
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 465 SEIQKSKEIIDGLNNKLANCMRTIEAKNVELL 496 (784)
Q Consensus 465 ~eI~~l~eqieeLkeeLe~l~~eLe~~n~El~ 496 (784)
..+.....++..++.+|.....++.+....+.
T Consensus 905 ~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~ 936 (1822)
T KOG4674|consen 905 DTLRKELEEITDLKEELTDALSQIREYQEEYS 936 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344455555555554444444444333
No 41
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.79 E-value=4.5e-09 Score=109.99 Aligned_cols=104 Identities=16% Similarity=0.091 Sum_probs=78.3
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCC-----------CCCCc---------ccccccc
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGD-----------LSPSR---------QHKLTAQ 164 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~-----------~~p~r---------~~k~~~~ 164 (784)
.++.-+.|||||||||| +||.|+||..++. +|+.+..++|+.|.+. ..|++ .+++.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~-~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~-- 99 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTH-LREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRT-- 99 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhh-hhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEE--
Confidence 45778999999999999 9999999988877 9999999999987641 12211 11111
Q ss_pred cCCCCccceeccC--CccchhhchhhhccCCccc-cccccccchhHHhhhcH
Q 003944 165 VKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVV-QSSKMQGKEKELADLLE 213 (784)
Q Consensus 165 ~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~g-yn~vmqgd~t~~~~m~e 213 (784)
-+|...+|++|+ ++..++..++...|+.+.. +.++.||.++++.+|.+
T Consensus 100 -ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~ 150 (243)
T cd03272 100 -IGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQ 150 (243)
T ss_pred -EECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccc
Confidence 134334677888 8889999999999998755 34578999988877754
No 42
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.77 E-value=0.00011 Score=86.06 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHh
Q 003944 222 ERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKS 267 (784)
Q Consensus 222 ~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~ 267 (784)
-......++++++.+|...+..-..+-..|+..+..++.|...|..
T Consensus 35 eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~ 80 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEK 80 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555543333444444444444444444333
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.73 E-value=0.00048 Score=79.65 Aligned_cols=11 Identities=0% Similarity=-0.209 Sum_probs=6.9
Q ss_pred CCCCccceeccC
Q 003944 166 KNRHAGHQLQNG 177 (784)
Q Consensus 166 ~~~~s~~~~~Ng 177 (784)
..||- ++|+|+
T Consensus 87 ~e~Yq-fcYv~~ 97 (546)
T PF07888_consen 87 DEFYQ-FCYVDQ 97 (546)
T ss_pred CCeEE-EEEECC
Confidence 45676 667665
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=0.00025 Score=85.20 Aligned_cols=181 Identities=15% Similarity=0.177 Sum_probs=95.1
Q ss_pred cccccchhH-HhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHH
Q 003944 199 SKMQGKEKE-LADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSI 277 (784)
Q Consensus 199 ~vmqgd~t~-~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~ 277 (784)
|.++|||=. =..||-+-|..-.. ...-=+++.++..+|...+.+++.+..+|+..+....+
T Consensus 648 VTl~GDV~dP~GtlTGGs~~~~a~-~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~k----------------- 709 (1174)
T KOG0933|consen 648 VTLEGDVYDPSGTLTGGSRSKGAD-LLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQK----------------- 709 (1174)
T ss_pred eeecCceeCCCCcccCCCCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 667888732 24566666654443 33333556777777777777777777777663333322
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC
Q 003944 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASE 357 (784)
Q Consensus 278 Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E 357 (784)
...+..++.-+.-++.-+...+...+..-....+.++...+.++..++.+....+..-.+++........+.
T Consensus 710 -f~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~------- 781 (1174)
T KOG0933|consen 710 -FRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDA------- 781 (1174)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------
Confidence 233333333333333333333331111112234445555555555555555555555555554444433300
Q ss_pred CCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 358 YPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 358 ~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~ 415 (784)
.. +-++ ...+++..|..++..+++...+..+...+..+|+-+.++.+.
T Consensus 782 -~~----~re~-----rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~ 829 (1174)
T KOG0933|consen 782 -KA----NRER-----RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEK 829 (1174)
T ss_pred -hh----hhHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 122666667777777777777777777777777766655544
No 45
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.71 E-value=0.0013 Score=77.19 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003944 484 CMRTIEAKNVELLNLQTALGQYFAEIEAK----GHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEK 559 (784)
Q Consensus 484 l~~eLe~~n~El~nLq~eLeqlq~eiEa~----erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~ 559 (784)
+..........+.+|..++.....+++.. .+.+.....+...+..+..+...++......+.++..+...+.+...
T Consensus 328 lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 328 LKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445566666666666666543 12222233344444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 560 MLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 593 (784)
Q Consensus 560 ~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~~~~ 593 (784)
.+.....++.-+..++...+.+-..|+..++.+.
T Consensus 408 ~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~ 441 (522)
T PF05701_consen 408 AIKTAEERLEAALKEAEAAKASEALALAEIKALS 441 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555556555555555665555443
No 46
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.7e-08 Score=108.01 Aligned_cols=125 Identities=16% Similarity=0.092 Sum_probs=82.8
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCC----------CCCCcccccccccCCCCccceec
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGD----------LSPSRQHKLTAQVKNRHAGHQLQ 175 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~----------~~p~r~~k~~~~~~~~~s~~~~~ 175 (784)
.+.-++|||||||||| |||.|++|.. +.|+....|+|..|+.. ..+ ..++.+...++. + -||+
T Consensus 22 ~~~~i~G~NGsGKS~ll~Ai~~~~~~~---~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~-~~i~~~~~~~~~-~-~~~i 95 (270)
T cd03242 22 GVTVLVGENAQGKTNLLEAISLLATGK---SHRTSRDKELIRWGAEEAKISAVLERQGGE-LALELTIRSGGG-R-KARL 95 (270)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhccCC---CCCCCCHHHHHhcCCCCEEEEEEEEeCCCe-EEEEEEEEcCCc-e-EEEE
Confidence 4666899999999999 9999999863 56788888999877641 111 112221111243 3 4788
Q ss_pred cC--Ccc-chhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003944 176 NG--FSK-QDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA-AERAAYESQTRQLRMELEQQRNKFAD 246 (784)
Q Consensus 176 Ng--~~~-~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~-a~~a~~e~ei~~l~~ELe~~~ekle~ 246 (784)
|| ++. .++.+.+....++| +...|+.+.|..||.++ .....++.+...+..++..+..+...
T Consensus 96 ng~~~~~l~~l~~~l~~i~~~~---------~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~ 161 (270)
T cd03242 96 NGIKVRRLSDLLGVLNAVWFAP---------EDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNA 161 (270)
T ss_pred CCeeccCHHHHhCcCcEEEEec---------chhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99 665 77777666655554 44557789999999999 55556666666666666655544433
No 47
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.70 E-value=0.00031 Score=83.31 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 310 ~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
+..+.||.++..+...+.+|+-+++=|.++.++.+.+-+
T Consensus 325 ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~ 363 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQ 363 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 355667777777777777777777777777766665543
No 48
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.66 E-value=0.00057 Score=82.09 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003944 513 GHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKL 578 (784)
Q Consensus 513 erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L 578 (784)
+.+..+..++...+..+...|.....++..+...+.++.+++......|.-.......|..++..|
T Consensus 477 ~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~l 542 (1195)
T KOG4643|consen 477 DQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNL 542 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344445555555555555556666666666666666666655555555555544444444444333
No 49
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.64 E-value=0.00043 Score=81.07 Aligned_cols=81 Identities=15% Similarity=0.234 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003944 221 AERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMEL 300 (784)
Q Consensus 221 a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL 300 (784)
..+..++.++...+..|-.+..++-+++.++........-++++++..+..++..-.+...+..+|..+..+|-..-+.|
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L 171 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDL 171 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45666666666666666666666666655555555555555555555555555555555555555555555555555555
Q ss_pred h
Q 003944 301 N 301 (784)
Q Consensus 301 ~ 301 (784)
.
T Consensus 172 ~ 172 (1265)
T KOG0976|consen 172 H 172 (1265)
T ss_pred h
Confidence 3
No 50
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.64 E-value=0.00058 Score=87.44 Aligned_cols=99 Identities=21% Similarity=0.197 Sum_probs=55.8
Q ss_pred HHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHH
Q 003944 249 LKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNS 328 (784)
Q Consensus 249 ~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~e 328 (784)
.+++..+..+..|+.+-+-+.........+...+..+...+...+..++......+. ....+...+...|..|..++..
T Consensus 738 ~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~-s~~~~k~~~e~~i~eL~~el~~ 816 (1822)
T KOG4674|consen 738 EKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEE-SEMATKDKCESRIKELERELQK 816 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455666555544444555556666666666666666655555432221 1223556666777777777777
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 003944 329 LKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 329 Le~ei~eLe~eLe~~~~e~~ 348 (784)
++.++.+-..++........
T Consensus 817 lk~klq~~~~~~r~l~~~~~ 836 (1822)
T KOG4674|consen 817 LKKKLQEKSSDLRELTNSLE 836 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 77776666666666655433
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.57 E-value=0.0023 Score=78.24 Aligned_cols=217 Identities=22% Similarity=0.284 Sum_probs=111.3
Q ss_pred eeccCCccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHH----
Q 003944 173 QLQNGFSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLAAERAAYESQTRQ------LRMELEQQRN---- 242 (784)
Q Consensus 173 ~~~Ng~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~a~~a~~e~ei~~------l~~ELe~~~e---- 242 (784)
+|+-|+.+.+|-+.++..+-+.+. -+++|+..+++-..+.+...+.+..+.. +.+.|...+.
T Consensus 202 lfmkaT~L~qi~~~~~~~~~~~~~--------~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W 273 (1074)
T KOG0250|consen 202 LFMKATQLEQITESYSEIMESLDH--------AKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAW 273 (1074)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666777776666665555 4566666666666666555555444432 2222222221
Q ss_pred -hHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhc--CCch-------HHH
Q 003944 243 -KFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRED--GDAN-------DVV 312 (784)
Q Consensus 243 -kle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~--e~~~-------~ti 312 (784)
.+-....++..........++....+....+.....+..+...+.+.++++..+..+...+.. .+.. ..+
T Consensus 274 ~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~ 353 (1074)
T KOG0250|consen 274 AWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREV 353 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 222233333333333333444444444444444445555555555555555555444431111 1111 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHHHH
Q 003944 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKET 392 (784)
Q Consensus 313 eeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeel 392 (784)
.+++.++......++.++..++.+...|......... .+.. .+.+++..++.|+.+++.+
T Consensus 354 ~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~---------------~~~~-----~~~e~e~k~~~L~~evek~ 413 (1074)
T KOG0250|consen 354 NDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNN---------------ELGS-----ELEERENKLEQLKKEVEKL 413 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------hhhh-----hHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555444320 1111 2346777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 393 CSERDKALQELTRLKQHLIEKAQEE 417 (784)
Q Consensus 393 e~e~~ka~~EL~rLr~eL~e~E~e~ 417 (784)
+..+..+..++..++..+...+.++
T Consensus 414 e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 414 EEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 8777777888777777776665544
No 52
>PRK00064 recF recombination protein F; Reviewed
Probab=98.56 E-value=3.3e-07 Score=102.32 Aligned_cols=126 Identities=16% Similarity=0.015 Sum_probs=86.0
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCC--------CCC-CcccccccccCCCCccceecc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGD--------LSP-SRQHKLTAQVKNRHAGHQLQN 176 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~--------~~p-~r~~k~~~~~~~~~s~~~~~N 176 (784)
.+.-++|||||||||| +||.++++. +..|+.+..|+|..|... ... ...+..+...++.- -|++|
T Consensus 24 ~~~~i~G~NgsGKT~lleai~~l~~~---~s~r~~~~~~li~~g~~~~~v~~~~~~~~~~~~i~~~~~~~~~~--~~~in 98 (361)
T PRK00064 24 GVNVLVGENGQGKTNLLEAIYLLAPG---RSHRTARDKELIRFGAEAAVIHGRVEKGGRELPLGLEIDKKGGR--KVRIN 98 (361)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCC---CCccCCChhHHHhcCCCcEEEEEEEEeCCcEEEEEEEEEcCCce--EEEEC
Confidence 4677999999999999 999996654 556888999999887641 011 01122221112332 47899
Q ss_pred C--C-ccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003944 177 G--F-SKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA-AERAAYESQTRQLRMELEQQRNKFAD 246 (784)
Q Consensus 177 g--~-~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~-a~~a~~e~ei~~l~~ELe~~~ekle~ 246 (784)
| + +.+++.+.+.-..++|+. ..++.+.|..||.++ .....++.....+.....++..+...
T Consensus 99 g~~~~~~~~l~~~~~~v~~~p~~---------~~l~~~~p~~RR~fLD~~~~~~~~~y~~~~~~y~k~lkqrn~ 163 (361)
T PRK00064 99 GEPQRKLAELAGLLNVVLFTPED---------LRLVKGGPSERRRFLDRLLFQIEPVYASALSQYERALKQRNA 163 (361)
T ss_pred CccccCHHHHhhhccEEEEccch---------hhhhcCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 9 5 788888877755555554 568999999999999 56667777666666666666554443
No 53
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.56 E-value=0.0023 Score=75.70 Aligned_cols=147 Identities=16% Similarity=0.233 Sum_probs=102.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 466 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRS 545 (784)
Q Consensus 466 eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~ 545 (784)
....+..++..+...+..+...+.....-++.+...+..+...++. +..+...+...+..|..+-..++..+..+..
T Consensus 345 ~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~---ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~ 421 (560)
T PF06160_consen 345 IVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE---IEEEQEEINESLQSLRKDEKEAREKLQKLKQ 421 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355667777778877777777777777778887777777554444 5555555677777777777777777777777
Q ss_pred HHHHHHHHhh---------hHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHH
Q 003944 546 EKEEILVKLS---------HSEKMLA-------EGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLL 609 (784)
Q Consensus 546 Eleel~ekL~---------~lE~~l~-------dlK~ei~kL~~eie~L~kaLdkAl~rl~~~~~~~~~~VDk~lv~nL~ 609 (784)
.+..+..++. .+...+. .+...+....-++..+++.|+.|...+..+...++..||.-.+..-+
T Consensus 422 ~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~ 501 (560)
T PF06160_consen 422 KLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQL 501 (560)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666654431 2222233 33333334444577888899999888888888889999999999999
Q ss_pred HHHHhc
Q 003944 610 VTYFQR 615 (784)
Q Consensus 610 ~~y~~~ 615 (784)
+.|=.+
T Consensus 502 iQYaNR 507 (560)
T PF06160_consen 502 IQYANR 507 (560)
T ss_pred HHHHhc
Confidence 999775
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.55 E-value=0.00049 Score=75.16 Aligned_cols=243 Identities=21% Similarity=0.274 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHH
Q 003944 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~EL 389 (784)
.++..++..++.+..+...+..+++.+..+++..+..+... ...+..++..+..+..++
T Consensus 54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e---------------------~~~~~~le~el~~lrk~l 112 (312)
T PF00038_consen 54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE---------------------LAERKDLEEELESLRKDL 112 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhhhhhh
Confidence 47788888888888888888888888888888887766511 113558888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 003944 390 KETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIE-ELREN-----NEYQRAQILHLENVLKQTLAKQEEFKMMN 463 (784)
Q Consensus 390 eele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~-EL~~~-----~e~lr~eL~~lEreLk~l~~~~e~l~~~n 463 (784)
++....+..+..++..|+.++.-....|...+..+...+. ..... ...+...|..+........ ..+
T Consensus 113 d~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~-------~~~ 185 (312)
T PF00038_consen 113 DEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIA-------QKN 185 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHH-------HHH
T ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHH-------hhh
Confidence 9888888888888888888888776666554544322221 00000 0112222222222221111 000
Q ss_pred hHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 464 HSEI-QKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK----GHLERELALAREESAKLSEYLKNADQ 538 (784)
Q Consensus 464 ~~eI-~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~----erle~El~~LreEie~L~~eLkeak~ 538 (784)
..++ .-...++.+++.........+.....++..+...+..++.+++.+ ..++..+..+... +..++...+.
T Consensus 186 ~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~---~~~~~~~~~~ 262 (312)
T PF00038_consen 186 REELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR---LDEEREEYQA 262 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred hhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH---HHHHHHHHHH
Confidence 0111 112333444444444444444444444555555444444444432 1122222222211 1223444555
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 539 RAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVE 583 (784)
Q Consensus 539 eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLd 583 (784)
.|..+..++..+...+.....+|.++-.-...|..+|..|++-|+
T Consensus 263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 263 EIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 555555666555555555555555554444456666666666664
No 55
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.53 E-value=5.8e-05 Score=87.48 Aligned_cols=149 Identities=21% Similarity=0.169 Sum_probs=89.2
Q ss_pred HhhhhhhccCCCCCcchh-hHHHHhhhcc-ccc-----ccccccCCCcccC-----------CCCCCCC---Cccccccc
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNAALNAF-RNG-----NSKASSNGINIPK-----------GSGDLSP---SRQHKLTA 163 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f~L~~~-~~~-----~~ra~~~~dli~~-----------~~~~~~p---~r~~k~~~ 163 (784)
+.-++-|||+.|.|||=| |||.||||.. ++. .-||+=...+... |-.+... +|.++.
T Consensus 21 ~~GltVlTGETGAGKSIiidAl~lllG~ra~~~~VR~G~~~a~v~a~F~~~~~~~~~~L~e~gie~~~~iilrR~i~~-- 98 (557)
T COG0497 21 EKGLTVLTGETGAGKSIIIDALGLLLGGRADASLVRHGAKRAEVEAIFDLDNPPARAWLEENGIEDDEEVILRRVISA-- 98 (557)
T ss_pred cCCceEEecCCCCcHhHHHHHHHHHhCCCCCcchhcCCCceeEEEEEecCCchHHHHHHHHcCCCCcCcEEEEEEEcC--
Confidence 355677999999999999 9999999976 333 3344433322111 1111001 144443
Q ss_pred ccCCCCccceeccC--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH---HHHHHHHH-HHHHHHHHH
Q 003944 164 QVKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA---AERAAYES-QTRQLRMEL 237 (784)
Q Consensus 164 ~~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~---a~~a~~e~-ei~~l~~EL 237 (784)
+|+ | -||+|| ||++...++ .+.-|.-+| ..--.-=|-|..-|.+. ++...... ....+....
T Consensus 99 --~Gr-S-r~~INg~~Vs~~~L~~l-~~~Li~IHG-------Qh~~q~Ll~~~~~r~lLD~f~~~~~~~~~~~~~~y~~w 166 (557)
T COG0497 99 --DGR-S-RAFINGQPVSLAQLKEL-GQLLIDIHG-------QHEHQSLLKPELQRQLLDAFAGLEELAQEAYQEAYQAW 166 (557)
T ss_pred --CCc-e-eEEECCEEeeHHHHHHH-HHhhheeec-------cchHHHhcChHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 487 4 699999 888765554 344555444 34446667888888888 44444442 366666667
Q ss_pred HHHHHhHHHHHHHHHHHHHhhHhHHHHHHh
Q 003944 238 EQQRNKFADVQLKLQEEQRLNESFQDELKS 267 (784)
Q Consensus 238 e~~~ekle~l~~~LeE~~~~le~Lkeel~~ 267 (784)
...+.++......-.+...+.+-|+=.+.+
T Consensus 167 ~~~~~~l~~~~~~~~e~~~~~d~L~fq~~E 196 (557)
T COG0497 167 KQARRELEDLQEKERERAQRADLLQFQLEE 196 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666666655544444444443333
No 56
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.52 E-value=0.00016 Score=76.36 Aligned_cols=63 Identities=27% Similarity=0.370 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 522 AREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 522 LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~~ 591 (784)
+...+..|...++++...++.....+..+ +..+..+..++...+.....+..-||.++.-|+.
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae~aE~~v~~L-------e~~id~le~eL~~~k~~~~~~~~eld~~l~el~~ 236 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAEFAERRVKKL-------EKEIDRLEDELEKEKEKYKKVQEELDQTLNELNE 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45566666666666666666665544444 4444444555555556667777777777766654
No 57
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.51 E-value=0.0035 Score=80.42 Aligned_cols=84 Identities=20% Similarity=0.269 Sum_probs=43.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHH
Q 003944 215 KNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELR 294 (784)
Q Consensus 215 err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~ 294 (784)
.-+.+.+..+++..-...+..-.......+..++..+.+....+..+.+++...... ...++..+..++.....+|+
T Consensus 254 ~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~---~~~~~~~~~~~l~~~~~~L~ 330 (1201)
T PF12128_consen 254 QYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDE---LNKELSALNADLARIKSELD 330 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554455555555555555555666666666666665554444332 22244444555555555555
Q ss_pred HHHHHHh
Q 003944 295 RLQMELN 301 (784)
Q Consensus 295 ~LqeeL~ 301 (784)
.+..+-.
T Consensus 331 ~i~~~~~ 337 (1201)
T PF12128_consen 331 EIEQQKK 337 (1201)
T ss_pred HHHHHHH
Confidence 5555443
No 58
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.51 E-value=0.0058 Score=72.05 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=9.9
Q ss_pred hhccCCCcchhcccc
Q 003944 738 AKILIPCPLKEIFGS 752 (784)
Q Consensus 738 ~~~~~~~~~~~~~~~ 752 (784)
|+.|.|+-+-++|.-
T Consensus 652 pklgrrstl~st~sE 666 (1265)
T KOG0976|consen 652 PKLGRRSTLASTFSE 666 (1265)
T ss_pred CccCChHHHHHHHHH
Confidence 666777777776643
No 59
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.51 E-value=0.00075 Score=80.16 Aligned_cols=87 Identities=9% Similarity=0.154 Sum_probs=48.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHH
Q 003944 215 KNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELR 294 (784)
Q Consensus 215 err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~ 294 (784)
=|.+|+..++.++.++.+.+.+.+.+.+--++....+.+....++.+.-+.+-++.+-+....++.-+...+.+++.+++
T Consensus 270 fkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlE 349 (1243)
T KOG0971|consen 270 FKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLE 349 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777777777777777777666666666665544443333333333333333444455555555555556666
Q ss_pred HHHHHHh
Q 003944 295 RLQMELN 301 (784)
Q Consensus 295 ~LqeeL~ 301 (784)
-|..+..
T Consensus 350 ILKaEme 356 (1243)
T KOG0971|consen 350 ILKAEME 356 (1243)
T ss_pred HHHHHHH
Confidence 5655554
No 60
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=0.00073 Score=81.04 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQE 416 (784)
Q Consensus 375 keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e 416 (784)
...+...|..-+.+|....++...+..+-.+++.++...+..
T Consensus 330 l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~ 371 (1200)
T KOG0964|consen 330 LQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQK 371 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 335666677777777777777777777777777666665543
No 61
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.49 E-value=0.0088 Score=72.39 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhh--hcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 291 SELRRLQMELNRR--EDGD--ANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 291 ~EL~~LqeeL~~~--e~e~--~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e 346 (784)
.+-.-|+++|.+. .+++ ...+|-.++..+..++.+....+.++.+|..+...+...
T Consensus 278 eekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 278 EEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ 337 (1195)
T ss_pred HHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455666666422 2322 235777778888888888888887888887777776554
No 62
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.48 E-value=0.00028 Score=81.57 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH
Q 003944 570 KLEEDNAKLRLAVEQ 584 (784)
Q Consensus 570 kL~~eie~L~kaLdk 584 (784)
.|.-+|..|++.|+.
T Consensus 374 ~Ld~EI~~YRkLLeg 388 (546)
T KOG0977|consen 374 SLDAEIAAYRKLLEG 388 (546)
T ss_pred HHHhHHHHHHHHhcc
Confidence 366778888877753
No 63
>PRK14079 recF recombination protein F; Provisional
Probab=98.48 E-value=8.3e-07 Score=98.68 Aligned_cols=120 Identities=17% Similarity=0.057 Sum_probs=78.9
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCC---------CCCCcccccccccCCCCccceecc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGD---------LSPSRQHKLTAQVKNRHAGHQLQN 176 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~---------~~p~r~~k~~~~~~~~~s~~~~~N 176 (784)
.+.-++|||||||||| |||.|++|. ..|..++.|+|..|... ......+.... ..+. + -|++|
T Consensus 24 g~nvi~G~NGsGKT~lLeAI~~~~~g----s~r~~~~~~lI~~g~~~~~v~~~~~~~~~~~~~~~~~-~~~~-~-~~~in 96 (349)
T PRK14079 24 GVTAVVGENAAGKTNLLEAIYLALTG----ELPNGRLADLVRFGEGEAWVHAEVETGGGLSRLEVGL-GPGR-R-ELKLD 96 (349)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcC----CCCCCcHHhheecCCCcEEEEEEEEeCCCeEEEEEEE-EcCc-e-EEEEC
Confidence 4667999999999999 999999886 25777888999887641 00001111110 1122 2 48899
Q ss_pred C--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 003944 177 G--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA-AERAAYESQTRQLRMELEQQRN 242 (784)
Q Consensus 177 g--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~-a~~a~~e~ei~~l~~ELe~~~e 242 (784)
| ++.+++.+++..-.++|+- ..++..+|..||.++ .....++.....+..++.+...
T Consensus 97 g~~~~~~~l~~~~~~v~~~p~d---------~~li~~~p~~RR~fLD~~l~~l~~~y~~~l~~y~k~lk 156 (349)
T PRK14079 97 GVRVSLRELARLPGAVLIRPED---------LELVLGPPEGRRAYLDRLLSRLSARYAALLSAYERAVQ 156 (349)
T ss_pred CeecCHHHHHhhhcEEEEecCc---------hHhhhCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9 8888888877555555554 356778999999999 4444555555555555555443
No 64
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.47 E-value=0.003 Score=74.99 Aligned_cols=145 Identities=17% Similarity=0.256 Sum_probs=83.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSE 546 (784)
Q Consensus 467 I~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~E 546 (784)
...+..++..+...+..+...+......+..++..++.+...++. +..+...+.+.+..|.....+++..+..+...
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee---ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~ 426 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE---IEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666677777777766555554 34444444555666666555555555555555
Q ss_pred HHHHHHHh-----h----hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHH
Q 003944 547 KEEILVKL-----S----HSEKMLAEGKGRANKLEED-------NAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLV 610 (784)
Q Consensus 547 leel~ekL-----~----~lE~~l~dlK~ei~kL~~e-------ie~L~kaLdkAl~rl~~~~~~~~~~VDk~lv~nL~~ 610 (784)
+..+...+ - .+-..+..+..++..+..+ +..+.+.++.+..++..+.....+.|+..-...-+|
T Consensus 427 L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~I 506 (569)
T PRK04778 427 LHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLI 506 (569)
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444221 1 1111222222233333332 445555677777777777777778888888888888
Q ss_pred HHHh
Q 003944 611 TYFQ 614 (784)
Q Consensus 611 ~y~~ 614 (784)
.|-.
T Consensus 507 qy~n 510 (569)
T PRK04778 507 QYAN 510 (569)
T ss_pred HHHh
Confidence 8843
No 65
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=0.0061 Score=74.85 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=8.3
Q ss_pred CCchhhhh-hhhhcc
Q 003944 681 NQIYGLTF-FLRKLK 694 (784)
Q Consensus 681 ~~Sfs~lw-FLe~Es 694 (784)
++-|.-.| |+++-+
T Consensus 704 d~~~r~aFYfaLrdt 718 (1293)
T KOG0996|consen 704 DEKFRPAFYFALRDT 718 (1293)
T ss_pred CHHHHHHHHHHHhhh
Confidence 45566666 666554
No 66
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.45 E-value=8.6e-08 Score=99.33 Aligned_cols=86 Identities=15% Similarity=0.029 Sum_probs=65.6
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCCCcccccccccCCCCccceeccCCccchhh
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSPSRQHKLTAQVKNRHAGHQLQNGFSKQDGV 184 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p~r~~k~~~~~~~~~s~~~~~Ng~~~~~~~ 184 (784)
+.+.=++|||||||||| |||.++||.......|+.++.++|..|... -.+.-+ ++.+|..
T Consensus 23 ~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~----~~v~~~----------~~~~~~~----- 83 (213)
T cd03277 23 PSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDE----GTIEIE----------LYGNPGN----- 83 (213)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCc----EEEEEE----------EEeCCCc-----
Confidence 34556899999999999 999999998888888999999999865421 113222 2222221
Q ss_pred chhhhccCCccccc-cccccchhHHhhhcHHHhH
Q 003944 185 SNGSHALQTEVVQS-SKMQGKEKELADLLEEKNR 217 (784)
Q Consensus 185 ~~l~~~~i~p~gyn-~vmqgd~t~~~~m~e~err 217 (784)
|..+++. +++||++++++.|+|.+..
T Consensus 84 -------~~~~n~~~~~~q~~~~~~~~~~~~e~l 110 (213)
T cd03277 84 -------IQVDNLCQFLPQDRVGEFAKLSPIELL 110 (213)
T ss_pred -------cccCCceEEEchHHHHHHHhCChHhHh
Confidence 7888888 7899999999999999776
No 67
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=8.3e-08 Score=103.06 Aligned_cols=103 Identities=20% Similarity=0.190 Sum_probs=65.2
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhcccccc-cccccCCC---cccCCCCCC-------------CCC----ccccccc
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNAFRNGN-SKASSNGI---NIPKGSGDL-------------SPS----RQHKLTA 163 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~-~ra~~~~d---li~~~~~~~-------------~p~----r~~k~~~ 163 (784)
..+.-++|||||||||| |||.|++|..+... +|+..... ..|.++... .+. |.+.
T Consensus 21 ~~~~~i~G~nGsGKS~il~ai~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~i~--- 97 (276)
T cd03241 21 EGLTVLTGETGAGKSILLDALSLLLGGRASADLIRSGAEKAVVEGVFDISDEEEAKALLLELGIEDDDDLIIRREIS--- 97 (276)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcCCChHHHhhCCCCeEEEEEEEecCCchHHHHHHHHcCCCCCCeEEEEEEEe---
Confidence 45667899999999999 99999999764332 22211111 122111110 011 3332
Q ss_pred ccCCCCccceeccC--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHHHH
Q 003944 164 QVKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLAAE 222 (784)
Q Consensus 164 ~~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~a~ 222 (784)
.+|. + .|++|| +++.++.++. +|-+.++|.+..+.-+.+..++.++..
T Consensus 98 -~~~~-s-~~~Ing~~vsl~~l~~i~--------~~li~i~gq~~~~~l~~~~~~~~lLD~ 147 (276)
T cd03241 98 -RKGR-S-RYFINGQSVTLKLLRELG--------SLLVDIHGQHDHQNLLNPERQLDLLDG 147 (276)
T ss_pred -cCCc-e-EEEECCEEECHHHHHHHH--------HhheEEECcHHHHHhcChHHhHhhhhC
Confidence 2344 3 689999 9999988876 445678888877777888877776644
No 68
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.44 E-value=1.4e-07 Score=95.08 Aligned_cols=80 Identities=20% Similarity=0.111 Sum_probs=52.9
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCCCcccccccccCCCCccceeccCCccchhhch
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSPSRQHKLTAQVKNRHAGHQLQNGFSKQDGVSN 186 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p~r~~k~~~~~~~~~s~~~~~Ng~~~~~~~~~ 186 (784)
+.-++|||||||||| |||.|||+..+.+..|...+ +++++........-.|..+ -++.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--f~~~------------------ 82 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLL-FLAGGGVKAGINSASVEIT--FDKS------------------ 82 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchh-hhcccccCCCCceEEEEEE--EECc------------------
Confidence 455899999999999 99999999988887776654 2233221111111222222 0000
Q ss_pred hhhccCCccccccccccchhHHhhhcHHHhHHHH
Q 003944 187 GSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA 220 (784)
Q Consensus 187 l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~ 220 (784)
|-.++|||.|+| ++.++++.+.
T Consensus 83 ----------~~~~~~~~~~~~--LS~Ge~~r~~ 104 (178)
T cd03239 83 ----------YFLVLQGKVEQI--LSGGEKSLSA 104 (178)
T ss_pred ----------eEEecCCcCccc--CCHHHHHHHH
Confidence 337799999999 7888888776
No 69
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.42 E-value=0.00035 Score=73.75 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 510 (784)
Q Consensus 469 ~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiE 510 (784)
.+..+|..|...|..+....+.....+..|+..++.++.++.
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544333
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.41 E-value=0.004 Score=79.98 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=24.7
Q ss_pred CCChhHHHHHHHHHHHhhhHHhHhHhhhhHHHHh
Q 003944 68 PHDPEIERYKAEIKRLQESEAEIKALSVNYAALL 101 (784)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (784)
+.-++|+++.+.+..|+..++++..|-.-|.+..
T Consensus 243 ~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~ 276 (1201)
T PF12128_consen 243 KVRPEFDKLQQQYRQLQALEQQLCHLHAELNADE 276 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888887766665543
No 71
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.41 E-value=0.013 Score=70.37 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=77.1
Q ss_pred HhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHH
Q 003944 208 LADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELN 287 (784)
Q Consensus 208 ~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ 287 (784)
++.-|..+-..+...+.+++.++..++.++..+....+++.....+..+..+.++.+...+..+++-....=.++..++.
T Consensus 21 Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dys 100 (717)
T PF09730_consen 21 LLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYS 100 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 66666677777778888889999999999999988888888888888888888887777777777777777788888888
Q ss_pred hHHHHHHHHHHHHh
Q 003944 288 GKLSELRRLQMELN 301 (784)
Q Consensus 288 ele~EL~~LqeeL~ 301 (784)
+++.+-=.|+.+++
T Consensus 101 elEeENislQKqvs 114 (717)
T PF09730_consen 101 ELEEENISLQKQVS 114 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888886
No 72
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.31 E-value=0.019 Score=68.23 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003944 513 GHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGR 567 (784)
Q Consensus 513 erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~e 567 (784)
..++.++..+..+++.+..+...+...+..+...-.++..++..+...+..++..
T Consensus 379 sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~ 433 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRY 433 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666666666666666666666666644
No 73
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.29 E-value=0.0045 Score=71.87 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHH
Q 003944 515 LERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKL----SHSEKMLAEGKGRANKLEEDNAKL 578 (784)
Q Consensus 515 le~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL----~~lE~~l~dlK~ei~kL~~eie~L 578 (784)
.+.|+..++..+..|+.++.++...-..+.+.++.+.-++ ..++..+.+...++.+++++...+
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l 361 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQL 361 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4455555566666666665555555444444444444332 234445555555555555554433
No 74
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.29 E-value=0.018 Score=74.88 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=15.8
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+||||||||-+ |||.++|.
T Consensus 29 ~~~l~G~NGaGKSTll~ai~~~l~ 52 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (1486)
T ss_pred eEEEECCCCCCHHHHHHHHHcccc
Confidence 445677777777776 77777764
No 75
>PF13514 AAA_27: AAA domain
Probab=98.24 E-value=0.016 Score=74.04 Aligned_cols=92 Identities=12% Similarity=-0.053 Sum_probs=49.9
Q ss_pred hccCCCCCcchh-hHHHHhhhccccccc--ccccCCCcccCCCCC---CCCC--cccccccccCCCCccceeccC--Ccc
Q 003944 111 LNGEYGLLKQNL-DATNAALNAFRNGNS--KASSNGINIPKGSGD---LSPS--RQHKLTAQVKNRHAGHQLQNG--FSK 180 (784)
Q Consensus 111 ~~g~NGSgKsni-d~~~f~L~~~~~~~~--ra~~~~dli~~~~~~---~~p~--r~~k~~~~~~~~~s~~~~~Ng--~~~ 180 (784)
+.|||-+|||-+ -+|...|=+...++. +-...+++-|.|.-. .++= .|+|.. ++ + -+.-+| ++-
T Consensus 1 IyGpNEAGKST~l~fI~~lLFGfp~r~~~~f~~p~~~~r~Gg~L~~~~g~~~~i~R~k~~---~~--t-l~~~~g~~~~e 74 (1111)
T PF13514_consen 1 IYGPNEAGKSTLLAFIRDLLFGFPTRSPYNFYHPKNGLRYGGRLEDPDGGELEIERRKGR---KG--T-LLDPDGQPLPE 74 (1111)
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCCcccCCCCCCCCceeEEEecCCceEEEeecCCC---CC--c-eECCCCCCCCH
Confidence 469999999999 877766655444332 333444455544433 1110 223322 12 2 455667 443
Q ss_pred chhhchhhhccCCccccccccccchhHHhh
Q 003944 181 QDGVSNGSHALQTEVVQSSKMQGKEKELAD 210 (784)
Q Consensus 181 ~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~ 210 (784)
..+..+| .||+.+.|.-+.-=|..++..
T Consensus 75 ~~L~~~L--gg~dr~~f~~iF~~d~~~L~~ 102 (1111)
T PF13514_consen 75 DWLAALL--GGLDRETFEAIFSFDHEELRE 102 (1111)
T ss_pred HHHHHHH--cCCCHHHHHHHHcCCHHHHHH
Confidence 3344444 688888887555445544443
No 76
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.24 E-value=0.011 Score=72.17 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=18.7
Q ss_pred HhhhhHhhhhhhccCCCCCcchh
Q 003944 100 LLKEKEEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 100 ~~~~~~~~~~~~~g~NGSgKsni 122 (784)
++||+++|+.+|.-.|=.|==|+
T Consensus 1282 ~~keL~e~~~~ik~sdi~GA~~~ 1304 (1758)
T KOG0994|consen 1282 TYKELREQLEKIKESDILGAFNS 1304 (1758)
T ss_pred HHHHHHHHHHHhhccCchhHHHH
Confidence 57899999999988777776665
No 77
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=0.023 Score=65.64 Aligned_cols=57 Identities=26% Similarity=0.242 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 385 LEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 385 Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~~~e~lr~eL~~lEreLk~l 452 (784)
+..-+.+...+...+..++..|+.|+.++.. .|.+......++..++..++..+...
T Consensus 423 l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~-----------~i~E~~~~l~~~~~el~~~~~~~~~~ 479 (581)
T KOG0995|consen 423 LKELLDEISEELHEAENELETLQEHFSNKAS-----------TIEEKIQILGEIELELKKAESKYELK 479 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666677778888888888877744 67777777666666666666555543
No 78
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.19 E-value=0.0012 Score=77.66 Aligned_cols=52 Identities=13% Similarity=0.106 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003944 515 LERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKG 566 (784)
Q Consensus 515 le~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ 566 (784)
++..+...+..+..+......++.+++.+.....+...++..++..+.++..
T Consensus 342 l~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~ 393 (562)
T PHA02562 342 LKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK 393 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444433333333334333333333
No 79
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0079 Score=70.87 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=25.0
Q ss_pred HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003944 213 EEKNRSL-AAERAAYESQTRQLRMELEQQRNKFADVQLK 250 (784)
Q Consensus 213 e~err~i-~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~ 250 (784)
|++|+.= ..|+++++..-.-|..+-.+.+++++..++.
T Consensus 315 EDKrkeNy~kGqaELerRRq~leeqqqreree~eqkEre 353 (1118)
T KOG1029|consen 315 EDKRKENYEKGQAELERRRQALEEQQQREREEVEQKERE 353 (1118)
T ss_pred hhhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 3999999888777777776666665554443
No 80
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.12 E-value=5.5e-07 Score=110.60 Aligned_cols=10 Identities=60% Similarity=0.797 Sum_probs=0.0
Q ss_pred HhhhhHhhhh
Q 003944 100 LLKEKEEQIS 109 (784)
Q Consensus 100 ~~~~~~~~~~ 109 (784)
.|+.||..|+
T Consensus 12 ~l~kke~El~ 21 (859)
T PF01576_consen 12 QLKKKEEELS 21 (859)
T ss_dssp ----------
T ss_pred HHHhhHHHHH
Confidence 3333333333
No 81
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.10 E-value=0.063 Score=65.90 Aligned_cols=10 Identities=0% Similarity=-0.081 Sum_probs=4.0
Q ss_pred CCChhHHHHH
Q 003944 68 PHDPEIERYK 77 (784)
Q Consensus 68 ~~~~~~~~~~ 77 (784)
||.+++...+
T Consensus 1198 ay~s~f~~me 1207 (1758)
T KOG0994|consen 1198 AYASRFLDME 1207 (1758)
T ss_pred hhHhHHHHHH
Confidence 4444443333
No 82
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=98.07 E-value=0.045 Score=62.93 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=107.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 468 QKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEK 547 (784)
Q Consensus 468 ~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~El 547 (784)
......+.++...+..+...+......++.++..++.+...+.. .+.+...+.+.+..|+.+--+++..+..+...+
T Consensus 350 r~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~---i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l 426 (570)
T COG4477 350 RKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTD---IEDEQEKVQEHLTSLRKDELEARENLERLKSKL 426 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777777777777777777788888888887665555 344444445555555555555555555555554
Q ss_pred HHHHHH----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHH
Q 003944 548 EEILVK----------------LSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVT 611 (784)
Q Consensus 548 eel~ek----------------L~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~~~~~~~~~~VDk~lv~nL~~~ 611 (784)
.++... +......+.++-.++....-.+..+..+++.|---+|.....+...|++-++..-+++
T Consensus 427 ~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ve~a~LaE~lIQ 506 (570)
T COG4477 427 HEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVVENAVLAEQLIQ 506 (570)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444322 1222333444444555555567888899999999999998899999999999999999
Q ss_pred HHhcCChh---------HHHHHHHHhcCCCH
Q 003944 612 YFQRNHSK---------EVLDLMVRMLGFSD 633 (784)
Q Consensus 612 y~~~~~~~---------evL~Lia~~L~~~~ 633 (784)
|=.+=+++ +.++|.=.=.++++
T Consensus 507 Y~NRYRs~~~~v~~~l~eAe~lF~~~~dY~~ 537 (570)
T COG4477 507 YGNRYRSRNAEVAKSLNEAERLFENAFDYDA 537 (570)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhcchhH
Confidence 97764332 66777665555554
No 83
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.07 E-value=0.0028 Score=76.44 Aligned_cols=34 Identities=35% Similarity=0.386 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 380 QSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 380 ~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
..+..+++.|.+....+..++.+|...+..-...
T Consensus 488 q~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~e 521 (697)
T PF09726_consen 488 QSLQQLEKRLAEERRQRASLEKQLQEERKARKEE 521 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3467778888888888888888887777554443
No 84
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.05 E-value=0.014 Score=65.58 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhchHHHHhHHHHHHHHHHHHHH
Q 003944 425 SKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLAN 483 (784)
Q Consensus 425 sk~I~EL~~~~e~lr~eL~~lEreLk~l~~~~e~l~~~n~~eI~~l~eqieeLkeeLe~ 483 (784)
...|.|+.....++..+|...-..+.... ..++.+....+.+++.|..+|..
T Consensus 493 ~~~i~El~~~l~~~e~~L~~a~s~~~~~k-------e~~e~e~~a~~~E~eklE~el~~ 544 (622)
T COG5185 493 KHDINELTQILEKLELELSEANSKFELSK-------EENERELVAQRIEIEKLEKELND 544 (622)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 33566666655555555544444333322 12233333344444555444443
No 85
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.05 E-value=0.05 Score=64.97 Aligned_cols=111 Identities=21% Similarity=0.237 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKE 548 (784)
Q Consensus 469 ~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Ele 548 (784)
.+..++..++.++..+...+..+..++..|+..-+++ ..-+..|......+..+.+.|...+-.-.+-++.+..+-.
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~---~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~ 275 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQY---LGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEES 275 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777777777777777777766665 2333334444444455555554443332233333333211
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 549 EILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 582 (784)
Q Consensus 549 el~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaL 582 (784)
.....+....+.+......+..+..++..|...|
T Consensus 276 q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~ql 309 (617)
T PF15070_consen 276 QGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQL 309 (617)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1111122223333444444444555555555444
No 86
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.056 Score=61.97 Aligned_cols=205 Identities=25% Similarity=0.344 Sum_probs=140.1
Q ss_pred ChhHHHHHHHHHHH-----hhhHHhHhHhhhhHH-HHhhhhHh---hhhhhccCCCCCcchhhHHHHhhhcccccccccc
Q 003944 70 DPEIERYKAEIKRL-----QESEAEIKALSVNYA-ALLKEKEE---QISRLNGEYGLLKQNLDATNAALNAFRNGNSKAS 140 (784)
Q Consensus 70 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~g~NGSgKsnid~~~f~L~~~~~~~~ra~ 140 (784)
..+++.|+.||.+| |.+++-|+| -||. ++|.||++ |.--|--+..+.++-||-+.-|||-+++-.
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qa--AeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~h---- 80 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQA--AEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQH---- 80 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 46789999999998 566666665 5675 68888876 666677788889999999999888665432
Q ss_pred cCCCcccCCCCCCCCCcccccccccCCCCccceeccCCccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH
Q 003944 141 SNGINIPKGSGDLSPSRQHKLTAQVKNRHAGHQLQNGFSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA 220 (784)
Q Consensus 141 ~~~dli~~~~~~~~p~r~~k~~~~~~~~~s~~~~~Ng~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~ 220 (784)
|.++ .+|- .- ..-++.-+..+--...
T Consensus 81 -------------------kk~~-~~g~------------------------e~----------EesLLqESaakE~~yl 106 (772)
T KOG0999|consen 81 -------------------KKVA-RDGE------------------------ER----------EESLLQESAAKEEYYL 106 (772)
T ss_pred -------------------HHhh-ccch------------------------hh----------HHHHHHHHHHhHHHHH
Confidence 2221 1111 00 1124555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003944 221 AERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMEL 300 (784)
Q Consensus 221 a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL 300 (784)
-.+.++++++++++.+|..+++..+++.............++.+...+..+++.....-.++..++.+++.+--.|+..+
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqV 186 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQV 186 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 67888999999999999999988888887777777777777777777777777777788888888888888877777777
Q ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 301 NRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 301 ~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~ 343 (784)
+... .=|-+.+.+.-++++|+.++.-|+..++..
T Consensus 187 s~LR---------~sQVEyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 187 SNLR---------QSQVEYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred HHHh---------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5222 222334445555555555555555555444
No 87
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.99 E-value=4.9e-05 Score=85.17 Aligned_cols=122 Identities=14% Similarity=0.007 Sum_probs=75.2
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCC---------CCCCcc--cccccccCCCCccceec
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGD---------LSPSRQ--HKLTAQVKNRHAGHQLQ 175 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~---------~~p~r~--~k~~~~~~~~~s~~~~~ 175 (784)
+.-++|||||||||| |||.++++. +..|+..+.++|..|... ...... +......++.-+ -+..
T Consensus 25 ~nvi~G~NGsGKT~lLeAi~~l~~~---~s~R~~~~~~li~~g~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~ 100 (365)
T TIGR00611 25 VNVIVGPNGQGKTNLLEAIYYLALG---RSHRTSRDKPLIRFGAEAFVIEGRVSKGDREVTIPLEGLLKKKGKKA-KVNI 100 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHccc---CCccccchhhHHhCCCCeEEEEEEEEeCCceEEEeEEEEEccCCCeE-EECC
Confidence 566899999999999 999886555 345788889999877541 110000 111000111111 2344
Q ss_pred cC-CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 003944 176 NG-FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLAA-ERAAYESQTRQLRMELEQQRN 242 (784)
Q Consensus 176 Ng-~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~a-~~a~~e~ei~~l~~ELe~~~e 242 (784)
|+ .+.+++.+.+--..++| |...|+...|..||.++- +...++.....+.....++-.
T Consensus 101 ~~~~~~~~l~~~l~~v~~~p---------~~~~L~~g~p~~RR~fLD~~~~~~~~~y~~~~~~y~r~lk 160 (365)
T TIGR00611 101 DGQDKLSDLAGLLPMQLFAP---------EDLTLVKGSPKYRRRFLDWGLFQVEPVYLSAWSDYQRVLK 160 (365)
T ss_pred CCCcCHHHHHhhccEEEecC---------CCHHHhcCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 44 56677777775544444 455689999999999995 666666555555555555443
No 88
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.99 E-value=0.12 Score=65.12 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=24.8
Q ss_pred hhccCCCCCcchh-hHHHHhhhccccccccc
Q 003944 110 RLNGEYGLLKQNL-DATNAALNAFRNGNSKA 139 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra 139 (784)
=++||||+||+-| .+..+|.-+...-+.+.
T Consensus 31 LIvG~NG~GKTTiIEcLKyatTG~lPpnsk~ 61 (1294)
T KOG0962|consen 31 LIVGANGTGKTTIIECLKYATTGELPPNSKG 61 (1294)
T ss_pred eEecCCCCCchhHHHHHHHHhcCcCCCCCcC
Confidence 3689999999999 88889887777666665
No 89
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.99 E-value=1.4e-06 Score=107.20 Aligned_cols=44 Identities=25% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhhhHhhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCC
Q 003944 101 LKEKEEQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGI 144 (784)
Q Consensus 101 ~~~~~~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~d 144 (784)
+.+-..+..||..+|+.+..-+ |+=.-+..+.+.+..=..-|.|
T Consensus 203 ~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLee 247 (859)
T PF01576_consen 203 RNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEE 247 (859)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566778888888888888 5544444455554444444444
No 90
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.96 E-value=0.045 Score=59.15 Aligned_cols=104 Identities=16% Similarity=0.248 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 472 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEIL 551 (784)
Q Consensus 472 eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ 551 (784)
..|..|+.++......++ .+..+.+|..+++.+..... .+..++..+.++......++..+-+.++.+..+..++-
T Consensus 138 q~I~~L~k~le~~~k~~e-~~~~~~el~aei~~lk~~~~---e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h 213 (294)
T COG1340 138 QKIKELRKELEDAKKALE-ENEKLKELKAEIDELKKKAR---EIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544333 23334444444444422222 23333333333333333333333333333333333333
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 552 VKLSHSEKMLAEGKGRANKLEEDNAKLR 579 (784)
Q Consensus 552 ekL~~lE~~l~dlK~ei~kL~~eie~L~ 579 (784)
.++..+......+..++..+..++-.|.
T Consensus 214 e~~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 214 EEFVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444333
No 91
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.091 Score=60.95 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=13.4
Q ss_pred ccccCCCCCCCCCccccccc
Q 003944 29 KIYDSRNVDDMSVSDRRDSH 48 (784)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~ 48 (784)
.+.+|+.|-..+--|||+|.
T Consensus 27 ~v~~pT~~~~valf~~r~S~ 46 (581)
T KOG0995|consen 27 RVTTPTSGTSVALFDRRPSL 46 (581)
T ss_pred CCCCCCCCcccccCCCCccc
Confidence 45667766666667888763
No 92
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.90 E-value=0.056 Score=58.42 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 003944 442 ILHLENVLKQT 452 (784)
Q Consensus 442 L~~lEreLk~l 452 (784)
|..+++.+...
T Consensus 140 I~~L~k~le~~ 150 (294)
T COG1340 140 IKELRKELEDA 150 (294)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 93
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.87 E-value=0.13 Score=61.58 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhccc--ccHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 003944 224 AAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKD--KTSIEITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 224 a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~e--k~~~Ei~~L~~EL~ele~EL~~LqeeL~ 301 (784)
+.+.+++.++..++..+.+..+.....+.+.+..+..|+..+.+...... .+...-..+..++..+..+++.|..++.
T Consensus 25 a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq 104 (617)
T PF15070_consen 25 AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ 104 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555556655444332111 1112224566777777777777776664
Q ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 302 RREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALE 341 (784)
Q Consensus 302 ~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe 341 (784)
... ...+.|.....+....+.+++..+.++.....
T Consensus 105 aqv-----~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~ 139 (617)
T PF15070_consen 105 AQV-----ENNEQLSRLNQEQEERLAELEEELERLQEQQE 139 (617)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 12223333333444445555555555554443
No 94
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.87 E-value=0.13 Score=61.26 Aligned_cols=55 Identities=22% Similarity=0.261 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003944 514 HLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRA 568 (784)
Q Consensus 514 rle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei 568 (784)
.+...+..+...+..+..+.......+..+..+-..+.+++..+...+..++..+
T Consensus 376 ~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 376 EIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444433
No 95
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.83 E-value=0.2 Score=62.49 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhccccc
Q 003944 233 LRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKT 275 (784)
Q Consensus 233 l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~ 275 (784)
+..++..+.+++.....+....+..+..++++++.++......
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555566666666655554433333
No 96
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.77 E-value=6e-06 Score=85.53 Aligned_cols=96 Identities=11% Similarity=-0.021 Sum_probs=62.6
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCCCcccccccccCCCCccceeccCCccchhhc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSPSRQHKLTAQVKNRHAGHQLQNGFSKQDGVS 185 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p~r~~k~~~~~~~~~s~~~~~Ng~~~~~~~~ 185 (784)
.|.-+.|||||||||+ ++|.+++|.. ....|..+++++++.+.....+ ..+. +. .++.. ....+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~~G~~-~~~~~~~~i~~~~~~~~~~~~~--~~~~-------~~--~~~~~---~~~~~ 90 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFVFGFR-ASKMRQKKLSDLIHNSAGHPNL--DSCS-------VE--VHFQE---IIDKP 90 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccC-HHHhhhhhHHHHhcCCCCCCCC--ceEE-------EE--EEEEe---CCCHH
Confidence 5777999999999999 9999999954 4567778899999865321111 1111 11 11111 01123
Q ss_pred hhhhccCCccccc-cccccchhHHhhhcHHHhH
Q 003944 186 NGSHALQTEVVQS-SKMQGKEKELADLLEEKNR 217 (784)
Q Consensus 186 ~l~~~~i~p~gyn-~vmqgd~t~~~~m~e~err 217 (784)
.|...|+.+..++ .||||++.++.+|.....+
T Consensus 91 ~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~ 123 (212)
T cd03274 91 LLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWK 123 (212)
T ss_pred HHHHCCcCCCCCceEEcCCcEEEeecccccccc
Confidence 5556778777765 5899999999998654433
No 97
>PRK11637 AmiB activator; Provisional
Probab=97.74 E-value=0.039 Score=63.28 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHH
Q 003944 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~EL 389 (784)
.++++++.++..+++++..+..++.+++.++......+. .++..|..++.+|
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~----------------------------~~~~~i~~~~~~i 98 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAIS----------------------------QASRKLRETQNTL 98 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHH
Confidence 355566666666666666666666666666665554433 3444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 390 KETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 390 eele~e~~ka~~EL~rLr~eL~e~ 413 (784)
..++.++..+..++..++..+...
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555444
No 98
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.73 E-value=0.12 Score=60.42 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC-CCCCcccccccccCCCCCchHHHHHHHHHHHHHH
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDA-SEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i-~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~EL 389 (784)
....|+.+...++.++..++..+..|+..++..+.... .+++.. .++. -....+.-+-.++
T Consensus 183 ~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~-~~~s~~dee~~-----------------~k~aev~lim~eL 244 (629)
T KOG0963|consen 183 REAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELF-DLKSKYDEEVA-----------------AKAAEVSLIMTEL 244 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHhhhhhhH-----------------HHHHHHHHHHHHH
Confidence 44566677777777777777777777777776665544 111110 0000 1122344456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 390 KETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 390 eele~e~~ka~~EL~rLr~eL~e~ 413 (784)
+.++..+..++.++..|+..+...
T Consensus 245 e~aq~ri~~lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 245 EDAQQRIVFLEREVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777778888888888777554
No 99
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.72 E-value=0.21 Score=60.40 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 314 eLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e 346 (784)
.+...+..++.++..+..++.++...+...+..
T Consensus 227 ~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~ 259 (650)
T TIGR03185 227 DLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD 259 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 333444455555555555555555555554443
No 100
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.70 E-value=0.12 Score=61.56 Aligned_cols=151 Identities=24% Similarity=0.325 Sum_probs=73.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCC
Q 003944 279 ITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEY 358 (784)
Q Consensus 279 i~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~ 358 (784)
...-..++.+++.+|+.+..++...+. .++.++..+..+..++.+.+.+..+++.++.-.+.... +-.+
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~-----~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~--lL~d---- 391 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEA-----EIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVE--LLPD---- 391 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcC----
Confidence 334445555555555555555442222 45555555666666666666666666666665544433 1111
Q ss_pred CcccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 003944 359 PSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQE----LTRLKQHLIEKAQEESEKMDEDSKIIEELREN 434 (784)
Q Consensus 359 ~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e~~ka~~E----L~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~~ 434 (784)
.+. ....|+.-++.....+.++..+..++... +.+|+......+.+....++ .|.+++..
T Consensus 392 -------~e~-----ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~----~ik~~r~~ 455 (594)
T PF05667_consen 392 -------AEE-----NIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQ----EIKELREE 455 (594)
T ss_pred -------cHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHH----HHHHHHHH
Confidence 111 12255666666666777776655555543 34444433333333222232 34455544
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 003944 435 NEYQRAQILHLENVLKQTLAKQ 456 (784)
Q Consensus 435 ~e~lr~eL~~lEreLk~l~~~~ 456 (784)
...+..++...+...+.+...+
T Consensus 456 ~k~~~~e~~~Kee~~~qL~~e~ 477 (594)
T PF05667_consen 456 IKEIEEEIRQKEELYKQLVKEL 477 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555544333
No 101
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.041 Score=65.60 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=64.6
Q ss_pred hhHHhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHH
Q 003944 205 EKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRK 284 (784)
Q Consensus 205 ~t~~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~ 284 (784)
++++..-.++--++.+....+++.+-+-+++.++.....+..++-.+.+.+.+.+.+++....+....+....++....+
T Consensus 620 f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s 699 (970)
T KOG0946|consen 620 FKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFIS 699 (970)
T ss_pred HHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666777777777777777777777777777777788888888777777755555555555555
Q ss_pred HHHhHHHHHHHHHHHHh
Q 003944 285 ELNGKLSELRRLQMELN 301 (784)
Q Consensus 285 EL~ele~EL~~LqeeL~ 301 (784)
+...+..++.-|..++.
T Consensus 700 ~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 700 EHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 55555555555555553
No 102
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.036 Score=66.06 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=11.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003944 466 EIQKSKEIIDGLNNKLANCMRTIEAK 491 (784)
Q Consensus 466 eI~~l~eqieeLkeeLe~l~~eLe~~ 491 (784)
++..+++++..+-.+..+....++..
T Consensus 814 e~~~~keq~~t~~~~tsa~a~~le~m 839 (970)
T KOG0946|consen 814 ELTQLKEQIQTLLERTSAAADSLESM 839 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 34444444444444444444444433
No 103
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.63 E-value=0.055 Score=65.54 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003944 427 IIEELRENNEYQRAQIL 443 (784)
Q Consensus 427 ~I~EL~~~~e~lr~eL~ 443 (784)
.+.+.+..+..++++|.
T Consensus 496 rL~eE~~~R~~lEkQL~ 512 (697)
T PF09726_consen 496 RLAEERRQRASLEKQLQ 512 (697)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333444443
No 104
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.60 E-value=0.29 Score=57.71 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCCHHHHHHhh
Q 003944 620 EVLDLMVRMLGFSDEDKQRIG 640 (784)
Q Consensus 620 evL~Lia~~L~~~~eek~k~G 640 (784)
+|+.+|.++++=+...+.-.|
T Consensus 813 e~ag~~~~f~~dd~s~~~s~g 833 (961)
T KOG4673|consen 813 EIAGQNSAFENDDFSEKRSMG 833 (961)
T ss_pred hHhcccchhhccchhhhhcCC
Confidence 888999888888877777777
No 105
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.58 E-value=0.3 Score=57.34 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 314 eLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e 346 (784)
.+...++....++++++.++.+++.++...+..
T Consensus 111 ~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~q 143 (629)
T KOG0963|consen 111 ELLNKQQKASEENEELKEELEEVNNELADLKTQ 143 (629)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Confidence 333334445556666666666666666655543
No 106
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.57 E-value=0.024 Score=59.85 Aligned_cols=113 Identities=18% Similarity=0.275 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Q 003944 225 AYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRE 304 (784)
Q Consensus 225 ~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e 304 (784)
.+|.++..+.-......+.++.++..++...+.+..++.+++.++. ++..+..++.+....+++.+..+.
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~-------qv~~~e~ei~~~r~r~~~~e~kl~--- 83 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLEN-------QVSQLESEIQEIRERIKRAEEKLS--- 83 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 6666666666666655556666666666655555556666665555 677777777887788887777774
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003944 305 DGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (784)
Q Consensus 305 ~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~ 347 (784)
.--.......|..+++.++.+...|+.++.++..+++.+....
T Consensus 84 ~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 84 AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112246666777777777777777777766666666665543
No 107
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.56 E-value=0.33 Score=57.39 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhhhh-----cCCchHHHHHHHHH
Q 003944 244 FADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRE-----DGDANDVVENLKRV 318 (784)
Q Consensus 244 le~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e-----~e~~~~tieeLq~e 318 (784)
+-.++..|.....++..+++.+..+.+++.+-..++..+..--...+-+++.|...|.... ........++|+..
T Consensus 358 i~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~ 437 (786)
T PF05483_consen 358 ICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGT 437 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555566666666655555555555554444444445555555553111 01111233455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 319 VATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 319 ieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
-..+..-+.....++.+|+..+.....
T Consensus 438 eqel~~llq~~ekev~dLe~~l~~~~~ 464 (786)
T PF05483_consen 438 EQELTGLLQIREKEVHDLEIQLTTIKE 464 (786)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 555555555555666666655554443
No 108
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00055 Score=76.08 Aligned_cols=109 Identities=21% Similarity=0.142 Sum_probs=77.9
Q ss_pred hHHHHhhhhHhhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCC--------CCCC---Cccccccc
Q 003944 96 NYAALLKEKEEQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSG--------DLSP---SRQHKLTA 163 (784)
Q Consensus 96 ~~~~~~~~~~~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~--------~~~p---~r~~k~~~ 163 (784)
||+++-=+-...+.=|.|||||||+|| +||-| ++-.|.-|-.+..++|-.|.. .... .-.+...
T Consensus 13 Ny~~~~l~~~p~~nvl~G~NgqGKTNlLEAI~~---l~~grS~Rt~~~~~lir~~~~~~~i~~~v~~~~~~~~~~~~~~- 88 (363)
T COG1195 13 NYAELDLDLSPGVNVLVGENGQGKTNLLEAIYL---LALGRSHRTSRDKELIRTGADEAEISARVQRKGREGTLGLQIS- 88 (363)
T ss_pred CcccceeccCCCcEEEECCCCCchHHHHHHHHH---HccccCccccchhHHHhcCCccEEEEEEEeeccceeeeEEEec-
Confidence 777777777778888999999999999 99988 556677788888888865543 0000 0111111
Q ss_pred ccCCCCccceeccC---CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH
Q 003944 164 QVKNRHAGHQLQNG---FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA 220 (784)
Q Consensus 164 ~~~~~~s~~~~~Ng---~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~ 220 (784)
.+|.- ---+|| .+++|..+.+---.++|+++. |++=+|..||..+
T Consensus 89 -~~g~~--~vring~~~~~~~el~g~l~~vlf~Pedl~---------Lv~G~P~~RRrFL 136 (363)
T COG1195 89 -KKGRR--RVRINGTKARKLAELAGHLNVVLFTPEDLG---------LVKGSPSDRRRFL 136 (363)
T ss_pred -cCcce--EEEECCcccccHHHHhhhCceEEecccccc---------cccCCHHHHHHHH
Confidence 11221 256788 778999999999999999984 5566778888777
No 109
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.51 E-value=0.56 Score=58.72 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=4.9
Q ss_pred hhhhHHHHh
Q 003944 93 LSVNYAALL 101 (784)
Q Consensus 93 ~~~~~~~~~ 101 (784)
+|.+|-.|+
T Consensus 308 VSeeakdLI 316 (1317)
T KOG0612|consen 308 VSEEAKDLI 316 (1317)
T ss_pred cCHHHHHHH
Confidence 566665443
No 110
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.47 E-value=0.13 Score=61.37 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 470 SKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEE 549 (784)
Q Consensus 470 l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Elee 549 (784)
.-.++..++.++..+..++..+...+..|..+++.+-..+.. ..|...+-++..-+.+...+|...-.....+.+++..
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~R-s~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~ 523 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNR-SAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666666776666677776666654333222 2344444444444555555555555555555555555
Q ss_pred HHHHh
Q 003944 550 ILVKL 554 (784)
Q Consensus 550 l~ekL 554 (784)
+..+|
T Consensus 524 l~gkL 528 (594)
T PF05667_consen 524 LTGKL 528 (594)
T ss_pred HHHHH
Confidence 55554
No 111
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.44 E-value=0.45 Score=56.12 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 522 AREESAKLSEYLKNADQRAEVSRSEK 547 (784)
Q Consensus 522 LreEie~L~~eLkeak~eie~l~~El 547 (784)
++.++..|+..|..+..+.+.+..++
T Consensus 610 ~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 610 FRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666666666665555555444
No 112
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.44 E-value=7.3e-05 Score=90.70 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCCCcccchhhhhhhhccCcccccccchh
Q 003944 705 WPDPRKIYMEEVELLQRLAPLQSLGFQDR 733 (784)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (784)
.+||.-|... ||.|+-.|-|+..|
T Consensus 683 ~~~~~sfL~r-----qR~~~~~r~~~~~~ 706 (713)
T PF05622_consen 683 SGPGQSFLAR-----QRQATNARRGPSGR 706 (713)
T ss_dssp -----------------------------
T ss_pred CCCCccHHHH-----hhccccCCCCCCCC
Confidence 3355566666 66666555444443
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.51 Score=56.41 Aligned_cols=17 Identities=29% Similarity=0.124 Sum_probs=11.2
Q ss_pred hhhhhccCCCCCcchhh
Q 003944 107 QISRLNGEYGLLKQNLD 123 (784)
Q Consensus 107 ~~~~~~g~NGSgKsnid 123 (784)
||--|+-=||=||=|.|
T Consensus 233 ~IW~LsDvd~DGkL~~d 249 (1118)
T KOG1029|consen 233 HIWTLSDVDGDGKLSAD 249 (1118)
T ss_pred hheeeeccCCCCcccHH
Confidence 45556666777777774
No 114
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.39 E-value=0.0011 Score=80.85 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=12.7
Q ss_pred hhHHHHHHHHhcCCCH
Q 003944 618 SKEVLDLMVRMLGFSD 633 (784)
Q Consensus 618 ~~evL~Lia~~L~~~~ 633 (784)
+.+.-..+.++|||.=
T Consensus 633 s~eFr~av~~llGyki 648 (722)
T PF05557_consen 633 SQEFREAVYSLLGYKI 648 (722)
T ss_dssp HHHHHHHHHHHHSEEE
T ss_pred HHHHHHHHHHHhccee
Confidence 4588889999999953
No 115
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.38 E-value=3.9e-05 Score=93.04 Aligned_cols=169 Identities=25% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHh----------HHHH
Q 003944 223 RAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNG----------KLSE 292 (784)
Q Consensus 223 ~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~e----------le~E 292 (784)
.+.+..++..++.++.......+.++..++..++.+..|+.+...+.. ...+...|..|+.. ++++
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~----~A~~a~~LrDElD~lR~~a~r~~klE~~ 316 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQA----EAREARALRDELDELREKADRADKLENE 316 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344555666666666665555555555555555555555554333322 11122222222222 2233
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cccCCCCCCCCcccccccccCC
Q 003944 293 LRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN--EKIFPDASEYPSRLDGKMVSSE 370 (784)
Q Consensus 293 L~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~--~~L~~~i~E~~~kI~~e~Ek~~ 370 (784)
+..+...|. .+..++..+..|..++..+-..+..|++++........ ...++.|.++..++. +..
T Consensus 317 ve~YKkKLe---------d~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~-~~~--- 383 (713)
T PF05622_consen 317 VEKYKKKLE---------DLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLS-EES--- 383 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHH---
Confidence 333333332 44555566666666666666666666666654332111 011222333333332 100
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 371 SFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 371 ~l~~keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL 410 (784)
.....++..+..++.++..+..++..+..+.+.|+..+
T Consensus 384 --~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 384 --RRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETN 421 (713)
T ss_dssp ----------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123444455566666666666666666666665543
No 116
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.46 Score=54.80 Aligned_cols=106 Identities=23% Similarity=0.268 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHH
Q 003944 315 LKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCS 394 (784)
Q Consensus 315 Lq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~ 394 (784)
+-..|-+++.++..++.++.+.+.+.+++....++. . + -...++..--.++.+|.+..-
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~-~----e----------------~~~~~E~qR~rlr~elKe~Kf 163 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDL-K----E----------------SNAAVEDQRRRLRDELKEYKF 163 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h----h----------------cchhhHHHHHHHHHHHHHHHH
Confidence 444566777777777777777777777776554411 0 0 122444445567777887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 003944 395 ERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE---NNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 395 e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~---~~e~lr~eL~~lEreLk~l 452 (784)
.-.++..+...|..+....+. .+..|+. .++.++-++..++.+..-+
T Consensus 164 RE~RllseYSELEEENIsLQK-----------qVs~LR~sQVEyEglkheikRleEe~ell 213 (772)
T KOG0999|consen 164 REARLLSEYSELEEENISLQK-----------QVSNLRQSQVEYEGLKHEIKRLEEETELL 213 (772)
T ss_pred HHHHHHHHHHHHHHhcchHHH-----------HHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 777777777777666544432 3333432 2444666666666655544
No 117
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.35 E-value=0.39 Score=53.31 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=31.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 465 SEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHL 515 (784)
Q Consensus 465 ~eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erl 515 (784)
.+|...+.+|.....++....+.+.+....+..|..+.+.++.+...++++
T Consensus 231 q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 231 QAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777776666666666666666666666666555555544443
No 118
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.32 E-value=0.73 Score=55.87 Aligned_cols=119 Identities=24% Similarity=0.292 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003944 221 AERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMEL 300 (784)
Q Consensus 221 a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL 300 (784)
+.-+.|...|..+..+|.+.+..+.+.....+-....+..+.++...++. +...|..+++++...=.++-.+.
T Consensus 27 ~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~-------~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 27 SKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLEL-------ERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh
Confidence 67788999999999999999999999988888888888888877777777 45555555555332222222222
Q ss_pred hhhhcCC--chHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 301 NRREDGD--ANDVVENLK---RVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 301 ~~~e~e~--~~~tieeLq---~eieeL~kei~eLe~ei~eLe~eLe~~~~e 346 (784)
+..+.+. ...+|..|+ -+.+.+.-+++.|..++.-|+..++..-..
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rL 150 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARL 150 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 123555543 456666667777777777777766666543
No 119
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.31 E-value=9.7e-05 Score=75.70 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=40.0
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCC
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGD 152 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~ 152 (784)
+.-|.|||||||||+ ++|.++++..+....|+...++++|.|...
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSET 69 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCC
Confidence 667999999999999 999999998888888999999999987654
No 120
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.99 Score=56.83 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003944 215 KNRSLAAERAAYESQTRQLRMELEQQRNKFADV 247 (784)
Q Consensus 215 err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l 247 (784)
++..+......+...+..+...++.+...++.+
T Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 316 ELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444
No 121
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.20 E-value=0.00012 Score=72.43 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=28.9
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSK 138 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~r 138 (784)
+.-++|||||||||+ |+|.|+++++..+..|
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~ 54 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRR 54 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhc
Confidence 556899999999999 9999999999999888
No 122
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.20 E-value=0.98 Score=54.92 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
+++.++..++-++++.+...+++..|-++|+.++...
T Consensus 362 q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql 398 (980)
T KOG0980|consen 362 QYENQLLALEGELQEQQREAQENREEQEQLRNELAQL 398 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777777777777766554
No 123
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.19 E-value=0.54 Score=51.82 Aligned_cols=100 Identities=23% Similarity=0.287 Sum_probs=53.1
Q ss_pred HHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccc
Q 003944 284 KELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD 363 (784)
Q Consensus 284 ~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~ 363 (784)
.....+..+.+.++.++.+.. ...+.|...=.+|++.+..+..+...+..+-+..+.+...
T Consensus 50 Kk~~~l~kek~~l~~E~~k~~-----~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~-------------- 110 (309)
T PF09728_consen 50 KKQEQLQKEKDQLQSELSKAI-----LAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSE-------------- 110 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 333334444444444444211 2445555555566666666666666666666666655441
Q ss_pred cccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 364 GKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 364 ~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~ 415 (784)
.....|..+...+++-.....+...+-..|+..+...-.
T Consensus 111 -------------kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~e 149 (309)
T PF09728_consen 111 -------------KFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIE 149 (309)
T ss_pred -------------HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555556655555433
No 124
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.17 E-value=0.00014 Score=74.69 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=36.3
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCC
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKG 149 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~ 149 (784)
.+.-++|||||||||| |||.+|||.......|...+.++|..|
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~ 65 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDG 65 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCC
Confidence 3556899999999999 999999998776677788888888754
No 125
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.16 E-value=0.17 Score=53.53 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 384 KLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 384 ~Le~ELeele~e~~ka~~EL~rLr~eL 410 (784)
.+..++..+...+......|..++..+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~ 40 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAEL 40 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 344444444444444444444444433
No 126
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=1 Score=54.13 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=6.2
Q ss_pred HHHHHHHhhhHHh
Q 003944 77 KAEIKRLQESEAE 89 (784)
Q Consensus 77 ~~~~~~~~~~~~~ 89 (784)
.++|.+||.--.+
T Consensus 166 ~~ele~lq~~~~~ 178 (698)
T KOG0978|consen 166 MEELEKLQLYSDE 178 (698)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555544333
No 127
>PF10375 GRAB: GRIP-related Arf-binding domain ; InterPro: IPR019459 The GRIP-related Arf-binding (GRAB) domain is located towards the C terminus of Rud3 type proteins. It is related to the GRIP domain, but the conserved tyrosine residue found at position 4 in all GRIP domains is replaced by a leucine residue. The small GTPase Arf is localised to the cis-Golgi where it recruits proteins via their GRAB domain, as part of the transport of cargo from the endoplasmic reticulum to the plasma membrane [].
Probab=97.14 E-value=0.00023 Score=45.45 Aligned_cols=18 Identities=33% Similarity=0.670 Sum_probs=16.3
Q ss_pred cchhhhHHHHHHHHHHHH
Q 003944 596 SDFLVDRRIVIKLLVTYF 613 (784)
Q Consensus 596 ~~~~VDk~lv~nL~~~y~ 613 (784)
++++|||+||+|+|++|+
T Consensus 2 ~e~~VDk~lisN~~l~Fl 19 (19)
T PF10375_consen 2 SEDNVDKRLISNLLLSFL 19 (19)
T ss_pred chhhHHHHHHHHHHHhcC
Confidence 567999999999999996
No 128
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.07 E-value=0.17 Score=55.14 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhhh--hcC
Q 003944 229 QTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRR--EDG 306 (784)
Q Consensus 229 ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~--e~e 306 (784)
+|+.+..-|+.-+.+++-+-..=+..-+++..|.+....++..+......+..|..++.-+..-|.-+...-..- ++.
T Consensus 63 Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~ 142 (306)
T PF04849_consen 63 DIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESS 142 (306)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccC
Confidence 444444444444444433332223333445555555555555555556667777777766655555444222100 011
Q ss_pred C--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 307 D--------------ANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 307 ~--------------~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e 346 (784)
. ....++.|+..+..|+.++..|+.+...|..+-......
T Consensus 143 ~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek 196 (306)
T PF04849_consen 143 ESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK 196 (306)
T ss_pred CCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH
Confidence 0 013568888888888888888888888887666655444
No 129
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.05 E-value=0.73 Score=60.34 Aligned_cols=82 Identities=10% Similarity=0.022 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 471 KEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEA-KGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEE 549 (784)
Q Consensus 471 ~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa-~erle~El~~LreEie~L~~eLkeak~eie~l~~Elee 549 (784)
..+++.+...+.....++.....++..+...+..+...+.. .+.+..++..++.+++.+..++..+..++..+...+..
T Consensus 881 ~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~ 960 (1353)
T TIGR02680 881 RARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGR 960 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333344443333333333221 12334444444444444444444444444444333333
Q ss_pred HHH
Q 003944 550 ILV 552 (784)
Q Consensus 550 l~e 552 (784)
+.+
T Consensus 961 a~~ 963 (1353)
T TIGR02680 961 AEE 963 (1353)
T ss_pred HHH
Confidence 333
No 130
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.05 E-value=0.00022 Score=59.82 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.3
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhccc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFR 133 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~ 133 (784)
+.-++||||||||-| |||.+||-...
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 456899999999999 99999986544
No 131
>PRK11281 hypothetical protein; Provisional
Probab=96.99 E-value=1.6 Score=55.70 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQEL 403 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL 403 (784)
++|..+..+..++++.+.....+...+
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqL 151 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQL 151 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333
No 132
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.95 E-value=0.86 Score=49.89 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 381 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 381 ~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~ 415 (784)
.++.|+..+..++.+-..+..|...|+.+-...+.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Ee 195 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEE 195 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccH
Confidence 36667777777777777777777777665554433
No 133
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.94 E-value=1.4 Score=52.29 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 278 Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
++..|...+.+++..+..+.-.|.. ....+..|+........-+.+...+.+.|..+++..+...+
T Consensus 241 qvs~L~~q~~eKen~~kdl~~~l~e-----s~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq 306 (786)
T PF05483_consen 241 QVSLLQTQLKEKENKIKDLLLLLQE-----SQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQ 306 (786)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 3444444444444555554444431 11244444444444444444444455555555555444433
No 134
>PF13166 AAA_13: AAA domain
Probab=96.93 E-value=1.7 Score=53.00 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=17.3
Q ss_pred hhhhccCCCCCcchhhHHHHhhhcc
Q 003944 108 ISRLNGEYGLLKQNLDATNAALNAF 132 (784)
Q Consensus 108 ~~~~~g~NGSgKsnid~~~f~L~~~ 132 (784)
+.=+-|.||||||-+=-++-.+..+
T Consensus 18 ~n~IYG~NGsGKStlsr~l~~~~~~ 42 (712)
T PF13166_consen 18 INLIYGRNGSGKSTLSRILKSLCRG 42 (712)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3446799999999995555544433
No 135
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.93 E-value=1.1 Score=50.94 Aligned_cols=18 Identities=22% Similarity=-0.005 Sum_probs=11.7
Q ss_pred cccccchhhhhhhhccCC
Q 003944 726 QSLGFQDRIYLLAKILIP 743 (784)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~ 743 (784)
+.|=|.-|+-|-|--.+|
T Consensus 399 p~LYfEiR~~G~pvnP~p 416 (420)
T COG4942 399 PALYFEIRRQGQPVNPQP 416 (420)
T ss_pred cchhhhhhhcCCcCCchh
Confidence 456688888877654433
No 136
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.90 E-value=0.0051 Score=74.98 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHH
Q 003944 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~EL 389 (784)
.+.+.+...+..++.+...|..+++.++.++..+..... .+..++......+. .++..+..++..+
T Consensus 336 ~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~-~Le~e~~~l~~~~~-------------~l~~~~~~~~~~~ 401 (722)
T PF05557_consen 336 DSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQ-ELEQEKEQLLKEIE-------------ELEASLEALKKLI 401 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
Confidence 345556666666666666666666666666655555443 33333333333332 3333344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 390 KETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 390 eele~e~~ka~~EL~rLr~eL~e~E 414 (784)
..++..+.-+..|++-||+.+..-+
T Consensus 402 ~RLerq~~L~~kE~d~LR~~L~syd 426 (722)
T PF05557_consen 402 RRLERQKALATKERDYLRAQLKSYD 426 (722)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555666666666666665543
No 137
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.88 E-value=0.22 Score=48.90 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 471 KEIIDGLNNKLANCMRTIEAKNVELLNLQTALG 503 (784)
Q Consensus 471 ~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLe 503 (784)
..+|..|+.++..+..+++.....+..++..++
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333333
No 138
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.86 E-value=1.9 Score=52.53 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 312 VENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 312 ieeLq~eieeL~kei~eLe~ei~eLe~eLe~~ 343 (784)
++++....-..+++...++..+.+|..+-..+
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~l 443 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADL 443 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555554444433
No 139
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.84 E-value=0.29 Score=47.97 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 383 QKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 383 e~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~ 415 (784)
..++.+.+.+......+...+..+.+.....+.
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~ 35 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQ 35 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544433
No 140
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.82 E-value=1.2 Score=49.60 Aligned_cols=35 Identities=14% Similarity=-0.023 Sum_probs=20.7
Q ss_pred ccccCCCCCcccchhhhhhhhccCccc-ccccchhhhh
Q 003944 700 NLLKIWPDPRKIYMEEVELLQRLAPLQ-SLGFQDRIYL 736 (784)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 736 (784)
.+.-+..+|+-++..++ -.|+|-|+ ---|--|+||
T Consensus 402 ~~at~~~~pss~s~~~~--~~R~d~l~~A~qfRArr~g 437 (499)
T COG4372 402 GRATPRCGPSSGSCRAA--TRRSDRLSPARQFRARRPG 437 (499)
T ss_pred ccccCccCCCCccHHHH--HhhccccchHHHhhhcCCC
Confidence 34567777776665544 36666663 3446666666
No 141
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.79 E-value=2.4 Score=52.56 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 278 Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~ 344 (784)
++-..+.+|.+++.+.++|+..+..... ++..|...++.+.+.+..++ +.......|+-++
T Consensus 175 ~ll~~h~eL~~lr~~e~~Le~~~~~~~~-----~l~~L~~~~~~l~kdVE~~r-er~~~~~~Ie~l~ 235 (1072)
T KOG0979|consen 175 ELLQYHIELMDLREDEKSLEDKLTTKTE-----KLNRLEDEIDKLEKDVERVR-ERERKKSKIELLE 235 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3666778888888888888888863333 67777777777777666655 3333444444443
No 142
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=1.7 Score=50.50 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 003944 509 IEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANK--LEEDNAKLRLAVEQSM 586 (784)
Q Consensus 509 iEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~k--L~~eie~L~kaLdkAl 586 (784)
+.++++-++++....+.....++.+.+..+-+..+..+..+. ++..+...+..|.- -.+++....++++..+
T Consensus 520 ~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~------Lee~lemK~~a~k~~i~~d~~~~~~~~~~~~~ 593 (654)
T KOG4809|consen 520 MNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQ------LEEILEMKKPAWKPGIHADMWRETHKPSNETV 593 (654)
T ss_pred HHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhhhhhcCCCHHHHHHHhhhhhhHH
Confidence 444455555555555555555555555555555554432221 11111111111111 3445666666666666
Q ss_pred HHHh
Q 003944 587 TRLN 590 (784)
Q Consensus 587 ~rl~ 590 (784)
+++.
T Consensus 594 ~k~~ 597 (654)
T KOG4809|consen 594 TKGS 597 (654)
T ss_pred HhhH
Confidence 6554
No 143
>PRK09039 hypothetical protein; Validated
Probab=96.76 E-value=0.24 Score=55.39 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003944 377 EMEQSLQKLEKDLKETCSERD 397 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ 397 (784)
.++..+..+...+..++..+.
T Consensus 78 ~l~~~l~~l~~~l~~a~~~r~ 98 (343)
T PRK09039 78 DLQDSVANLRASLSAAEAERS 98 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444443
No 144
>PRK09039 hypothetical protein; Validated
Probab=96.74 E-value=0.17 Score=56.46 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=6.4
Q ss_pred hHHHHHHHHhc
Q 003944 619 KEVLDLMVRML 629 (784)
Q Consensus 619 ~evL~Lia~~L 629 (784)
..+|.-++.+|
T Consensus 240 ~~~L~~ia~~l 250 (343)
T PRK09039 240 QAEIAKLAAAL 250 (343)
T ss_pred HHHHHHHHHHH
Confidence 45666666555
No 145
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.58 E-value=1.7 Score=48.23 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 382 Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
++.+..-+..+......+..++..+++...+.
T Consensus 172 ~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~ 203 (325)
T PF08317_consen 172 LEQLDELLPKLRERKAELEEELENLKQLVEEI 203 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444555555555555554443
No 146
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.48 E-value=1.7 Score=49.55 Aligned_cols=43 Identities=19% Similarity=0.368 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESE 419 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe 419 (784)
.+...+...++.|++...++.-+.-++++++......++.|..
T Consensus 394 nLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 394 NLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5555566678888888888888888999988888777665543
No 147
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.48 E-value=1.3 Score=45.70 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003944 519 LALAREESAKLSEYLKNA 536 (784)
Q Consensus 519 l~~LreEie~L~~eLkea 536 (784)
+..+..++..|...|++.
T Consensus 173 ~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 173 VKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 148
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.47 E-value=1.3 Score=45.40 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 382 Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~ 415 (784)
+..+...+.-++.+..+++..+..++..+.+.+.
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq 39 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQ 39 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555666666666666655544
No 149
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.42 E-value=2.5 Score=48.25 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=22.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhh
Q 003944 235 MELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKM 270 (784)
Q Consensus 235 ~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~ 270 (784)
..|++.+.+++.+...+.+..++..+|+.++..++.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~ 73 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLET 73 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666666655
No 150
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.38 E-value=1.6 Score=45.52 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 515 LERELALAREESAKLSEYLKNADQRAEVSRS 545 (784)
Q Consensus 515 le~El~~LreEie~L~~eLkeak~eie~l~~ 545 (784)
++..++..+-.+.+|...|.+...+.+.|..
T Consensus 166 Lqa~lkk~e~~~~SLe~~LeQK~kEn~ELtk 196 (207)
T PF05010_consen 166 LQASLKKEEMKVQSLEESLEQKTKENEELTK 196 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555554444
No 151
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=96.35 E-value=0.0087 Score=47.32 Aligned_cols=41 Identities=22% Similarity=0.496 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHHhcCC---hhHHHHHHHHhcCCCHHHHHHh
Q 003944 599 LVDRRIVIKLLVTYFQRNH---SKEVLDLMVRMLGFSDEDKQRI 639 (784)
Q Consensus 599 ~VDk~lv~nL~~~y~~~~~---~~evL~Lia~~L~~~~eek~k~ 639 (784)
.+|-.-++|+++.|+.++. +..++.+||++|+||++|+.++
T Consensus 2 ~~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~i 45 (46)
T PF01465_consen 2 GINLEYLKNVLLQFLESREPSEREQLLPVIATLLKFSPEEKQKI 45 (46)
T ss_dssp -HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--HHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHhh
Confidence 4678889999999999876 5589999999999999999875
No 152
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=4.7 Score=50.37 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHh
Q 003944 576 AKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQ 614 (784)
Q Consensus 576 e~L~kaLdkAl~rl~~~~~~~~~~VDk~lv~nL~~~y~~ 614 (784)
..|+-|++.++.+- |+++ .||..-+.+--|.|+.
T Consensus 517 kkyeiAvt~~Lgk~----~daI-iVdte~ta~~CI~ylK 550 (1141)
T KOG0018|consen 517 KKYEIAVTVVLGKN----MDAI-IVDTEATARDCIQYLK 550 (1141)
T ss_pred HHHHHHHHHHHhcc----cceE-EeccHHHHHHHHHHHH
Confidence 56777777776533 5666 7888888888899985
No 153
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.24 E-value=3.5 Score=48.07 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=26.5
Q ss_pred HHHHHHHhhhHHhHhHhhhhHHHHhhhhHhhhhhhccCCCCCcc
Q 003944 77 KAEIKRLQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLLKQ 120 (784)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~NGSgKs 120 (784)
...|.+|-+-.-+|-.|+|| |.|+++.+=+=+|-|
T Consensus 27 ~~rI~~LEe~K~el~~lPv~---------dEi~kVK~L~L~GQT 61 (570)
T COG4477 27 YQRIDKLEERKNELLNLPVN---------DEISKVKKLHLTGQT 61 (570)
T ss_pred HHHHHHHHHHHHHHHcCCch---------hHHHHHhcCcccCcc
Confidence 35677788888888888887 677877777777755
No 154
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.22 E-value=1.7 Score=44.41 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003944 487 TIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 487 eLe~~n~El~nLq~eLeql 505 (784)
.......+...|+..+-.|
T Consensus 124 ~~~eL~~~~~~Lq~Ql~~~ 142 (193)
T PF14662_consen 124 RSKELATEKATLQRQLCEF 142 (193)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 3333333444444444333
No 155
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.18 E-value=0.0021 Score=66.16 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=28.5
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccc-cccccCCCcccC
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGN-SKASSNGINIPK 148 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~-~ra~~~~dli~~ 148 (784)
+.-+.|||||||||+ +||.|||.....++ .++....++|..
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~ 66 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE 66 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC
Confidence 778999999999999 99999995444332 222234455543
No 156
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.14 E-value=0.0014 Score=67.64 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=29.1
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCccc
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIP 147 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~ 147 (784)
..+.-|.||||||||+| ++|.|+|........+...+.+++.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~ 70 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFA 70 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhc
Confidence 34667999999999999 9999999544433333334445453
No 157
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.11 E-value=2.1 Score=44.24 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 474 IDGLNNKLANCMRTIEAKNVELLNLQTALGQ 504 (784)
Q Consensus 474 ieeLkeeLe~l~~eLe~~n~El~nLq~eLeq 504 (784)
.++|..+|..+...+...+..+..|...++-
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777777777666553
No 158
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.10 E-value=0.0023 Score=63.90 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=23.6
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRN 134 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~ 134 (784)
.+.=++||||+|||.| |||.+|||...+
T Consensus 20 g~~vi~G~Ng~GKStil~ai~~~L~~~~~ 48 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILEAIRYALGGQSS 48 (202)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHSS-T
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 4566899999999999 999999987553
No 159
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.07 E-value=3.1 Score=45.95 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e 346 (784)
++.+++..+++-......+..+...|.+.+..+-..
T Consensus 115 ~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQ 150 (309)
T PF09728_consen 115 TLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQ 150 (309)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433
No 160
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.05 E-value=1.1 Score=47.21 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
+|+.++..++....+++.+..++.-|+.+++.+....
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q 85 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQ 85 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777788888888777777777777777766554
No 161
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.05 E-value=1.6 Score=50.89 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQ 456 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~~~e~lr~eL~~lEreLk~l~~~~ 456 (784)
......+.++.++..++.+...++..+...+.+......... ......+..+..+....+.++...+..+..+...+
T Consensus 158 ~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~---~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 158 DSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQE---GDYYSEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456667777777777777777777777654322111000 11112344454444445555555555444443211
Q ss_pred HHhhh----hchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 457 EEFKM----MNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAE 508 (784)
Q Consensus 457 e~l~~----~n~~eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~e 508 (784)
..... .+...+..+..++.+++.++..+........-.+..++.+++.++..
T Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 235 GGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQ 290 (498)
T ss_pred ccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 10000 00011223445555555555554443333333344444444444433
No 162
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.03 E-value=2.1 Score=43.75 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 389 LKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 389 Leele~e~~ka~~EL~rLr~eL~e~ 413 (784)
+++++.--.++..+...|+..+...
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ 34 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETA 34 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555444
No 163
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.94 E-value=3.2 Score=45.08 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=25.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK 512 (784)
Q Consensus 467 I~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~ 512 (784)
+......+..|+.++......+..+..-+..+|+.+.+.+..+.++
T Consensus 153 LskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~ 198 (305)
T PF14915_consen 153 LSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEI 198 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555556666655666666666655555544
No 164
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.91 E-value=1.5 Score=51.09 Aligned_cols=76 Identities=13% Similarity=0.226 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 003944 316 KRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSE 395 (784)
Q Consensus 316 q~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e 395 (784)
....+-++.++.+++.++.+.+..+...+.... -+..+ ....+...+..+..++..++.+
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~-~~~~~-------------------~~~~~~~~l~~l~~~l~~~~~~ 219 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQENG-GILPD-------------------QEGDYYSEISEAQEELEAARLE 219 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccCcc-------------------chhhHHHHHHHHHHHHHHHHHH
Confidence 344666777777777788888888887765433 00000 0113344566666666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 003944 396 RDKALQELTRLKQHLI 411 (784)
Q Consensus 396 ~~ka~~EL~rLr~eL~ 411 (784)
+..+...++.++..+.
T Consensus 220 l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 220 LNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6666666666665543
No 165
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.83 E-value=4.5 Score=45.85 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=83.7
Q ss_pred HhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHH
Q 003944 208 LADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELN 287 (784)
Q Consensus 208 ~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ 287 (784)
+.+..++.|-.|.-.+.-|+.++.++...-....+.-.+++...-....+.-.|++.++..+..-+....+-.+.+.|+-
T Consensus 209 ~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil 288 (502)
T KOG0982|consen 209 LVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREIL 288 (502)
T ss_pred hhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 34455556666665666666655555544333333333333333333445555555555555543333333333333332
Q ss_pred hHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccc
Q 003944 288 GKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMV 367 (784)
Q Consensus 288 ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~E 367 (784)
-+.... ..-.++.++..+..+..++.+|+..+-.|....+.+..+.+
T Consensus 289 ~k~eRe--------------asle~Enlqmr~qqleeentelRs~~arlksl~dklaee~q------------------- 335 (502)
T KOG0982|consen 289 IKKERE--------------ASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQ------------------- 335 (502)
T ss_pred HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------------------
Confidence 222111 22355666667777777777777777777666666655443
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 368 SSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 368 k~~~l~~keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~e 409 (784)
.+.+.++.+...+...+..+.....-|.+.+.+
T Consensus 336 ---------r~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~e 368 (502)
T KOG0982|consen 336 ---------RSSDLLEALRLQLICEQKLRVRMNDILRRFQEE 368 (502)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666665555555555554433
No 166
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.82 E-value=4 Score=45.18 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 382 Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
+-.+-.+|+..+.+++....-.+.|+......
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~L 42 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQAL 42 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777777554444
No 167
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.76 E-value=3.2 Score=51.09 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHH
Q 003944 315 LKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCS 394 (784)
Q Consensus 315 Lq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~ 394 (784)
.....+-+..++.+++.++.+.+.+++..+.... +... .. ..-.+.++..+...+..++.
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~--l~~~----~~--------------~~~~~~~L~~l~~ql~~a~~ 251 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSD--LLMG----NN--------------ATLATQQLAELNTELSRARA 251 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Cccc----CC--------------ccchHHHHHHHHHHHHHHHH
Confidence 3344566667777777777777777777776544 1100 00 00122446667777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003944 395 ERDKALQELTRLKQHLI 411 (784)
Q Consensus 395 e~~ka~~EL~rLr~eL~ 411 (784)
++..+...++.++..+.
T Consensus 252 ~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 252 NRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777777766654
No 168
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=95.72 E-value=0.0027 Score=63.99 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=0.0
Q ss_pred hhccCCCCCcchh-hHHHHhhh
Q 003944 110 RLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L~ 130 (784)
=|.|||||||||| +|+.++++
T Consensus 3 viiG~N~sGKS~il~ai~~~~~ 24 (303)
T PF13304_consen 3 VIIGPNGSGKSNILEAIYFLFS 24 (303)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 4789999999999 99999876
No 169
>PRK11281 hypothetical protein; Provisional
Probab=95.72 E-value=9.7 Score=48.94 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHH
Q 003944 227 ESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQD 263 (784)
Q Consensus 227 e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lke 263 (784)
-+++.+.+++.+..+..++.+..++.+..++++.+++
T Consensus 72 L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 72 LDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3344444444444444444444444444444444443
No 170
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.66 E-value=3.2 Score=47.43 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhchHHHHhHHHHHHHHH
Q 003944 399 ALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLN 478 (784)
Q Consensus 399 a~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~~~e~lr~eL~~lEreLk~l~~~~e~l~~~n~~eI~~l~eqieeLk 478 (784)
+..-|.+|+......+. .|.+|.-.+-|+..++.+|.-++..- ..+ ..=|..++..|++|-
T Consensus 315 LNEvL~kLk~tn~kQq~-----------~IqdLq~sN~yLe~kvkeLQ~k~~kQ----qvf----vDiinkLk~niEeLI 375 (527)
T PF15066_consen 315 LNEVLQKLKHTNRKQQN-----------RIQDLQCSNLYLEKKVKELQMKITKQ----QVF----VDIINKLKENIEELI 375 (527)
T ss_pred HHHHHHHHHhhhHHHHH-----------HHHHhhhccHHHHHHHHHHHHHhhhh----hHH----HHHHHHHHHHHHHHH
Confidence 34555666655443332 67777777777777777665433221 111 122344555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 003944 479 NKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK----GHLERELALAREESAKLSEYLK-NADQRAEVSRSEKEEILVK 553 (784)
Q Consensus 479 eeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~----erle~El~~LreEie~L~~eLk-eak~eie~l~~Eleel~ek 553 (784)
++--.+.=+....+..+.+|+..+...+..+.+. +.++-++..++...-.|++... ++++. ...-.+
T Consensus 376 edKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqK--------nksvsq 447 (527)
T PF15066_consen 376 EDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQK--------NKSVSQ 447 (527)
T ss_pred HhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--------hhHHHH
Confidence 4433333344455566777777777666655542 3344455555555544444321 11111 111111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 554 LSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRM 592 (784)
Q Consensus 554 L~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~~~ 592 (784)
--+.++.+.....++.+|+..-..+.+|...|+..|++-
T Consensus 448 clEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrE 486 (527)
T PF15066_consen 448 CLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKRE 486 (527)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223455555556667778877888889999999999873
No 171
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.63 E-value=2.7 Score=47.42 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003944 569 NKLEEDNAKLRLAVEQSMTRL 589 (784)
Q Consensus 569 ~kL~~eie~L~kaLdkAl~rl 589 (784)
..++.++..++..++.+...+
T Consensus 249 ~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 249 TEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444554554444444333
No 172
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.61 E-value=0.42 Score=58.97 Aligned_cols=19 Identities=11% Similarity=-0.006 Sum_probs=15.4
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
++.-|+||||+|||.+ -.|
T Consensus 323 ~~liItGpNg~GKSTlLK~i 342 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTL 342 (771)
T ss_pred eEEEEECCCCCCchHHHHHH
Confidence 5667899999999999 443
No 173
>PLN02939 transferase, transferring glycosyl groups
Probab=95.57 E-value=9.8 Score=47.92 Aligned_cols=55 Identities=27% Similarity=0.235 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhhhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 289 KLSELRRLQMELNRRED-GDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 289 le~EL~~LqeeL~~~e~-e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
++.+++.+..++..... ++. -+..|-.++..+..++.-|+.++.-|..++....+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (977)
T PLN02939 199 LEEQLEKLRNELLIRGATEGL--CVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAE 254 (977)
T ss_pred hHHHHHHHhhhhhcccccccc--ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 34566666666642211 111 33445566777777777777777777776665543
No 174
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.50 E-value=2.3 Score=41.64 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 515 LERELALAREESAKLSEYLKNADQRAEVSRSE 546 (784)
Q Consensus 515 le~El~~LreEie~L~~eLkeak~eie~l~~E 546 (784)
+..++..++.+...|...+...+.++..+..-
T Consensus 71 L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 71 LELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 175
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=8.9 Score=46.52 Aligned_cols=36 Identities=25% Similarity=0.112 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003944 533 LKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRA 568 (784)
Q Consensus 533 Lkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei 568 (784)
..++...++.++.+++....++.+++..+.+...++
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~el 596 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELEL 596 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444455555555555555443
No 176
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.27 E-value=6.9 Score=48.26 Aligned_cols=32 Identities=38% Similarity=0.369 Sum_probs=22.0
Q ss_pred HHHHHHHhhhHHhHhHhh--------------hhHH---HHhhhhHhhh
Q 003944 77 KAEIKRLQESEAEIKALS--------------VNYA---ALLKEKEEQI 108 (784)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~--------------~~~~---~~~~~~~~~~ 108 (784)
--=+.||++-|.|.|+|- +=|| .-|.--|-|+
T Consensus 261 ~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 261 EFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444778888888888773 2243 3577778888
No 177
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.22 E-value=14 Score=47.52 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=7.9
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 003944 282 MRKELNGKLSELRRLQMEL 300 (784)
Q Consensus 282 L~~EL~ele~EL~~LqeeL 300 (784)
+...+....+++.++++++
T Consensus 107 Leq~l~~~~~~L~~~q~~l 125 (1109)
T PRK10929 107 LEQEILQVSSQLLEKSRQA 125 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444
No 178
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.14 E-value=6.7 Score=43.44 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 540 AEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQ 584 (784)
Q Consensus 540 ie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLdk 584 (784)
|+.+-.|-.-+.+++.+++. +..-++.-+.+|..+|+.
T Consensus 191 IDaLi~ENRyL~erl~q~qe-------E~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQE-------EKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 44444444334444433333 333455668888888884
No 179
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=9.2 Score=44.68 Aligned_cols=110 Identities=24% Similarity=0.249 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC
Q 003944 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASE 357 (784)
Q Consensus 278 Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E 357 (784)
.+..++.++.++++.+..++++.+...+ ++..++..+..+.--+...+.++..++.++....+-..+.
T Consensus 346 kv~~lq~~l~eke~sl~dlkehassLas-----~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dda------- 413 (654)
T KOG4809|consen 346 KVNALQAELTEKESSLIDLKEHASSLAS-----AGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDA------- 413 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-------
Confidence 4444444444444444444444432222 3444444444444444444555555555555444322200
Q ss_pred CCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 358 YPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 358 ~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E 414 (784)
.+.+ ++-+.|..++.+......+..++..+.+++-.-+.+.+
T Consensus 414 -------r~~p--------e~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeve 455 (654)
T KOG4809|consen 414 -------RMNP--------EFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVE 455 (654)
T ss_pred -------hcCh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 44455666666666666666666666666655554443
No 180
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.03 E-value=6.6 Score=42.79 Aligned_cols=116 Identities=19% Similarity=0.233 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhchHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 427 IIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKE---IIDGLNNKLANCMRTIEAKNVELLNLQTALG 503 (784)
Q Consensus 427 ~I~EL~~~~e~lr~eL~~lEreLk~l~~~~e~l~~~n~~eI~~l~e---qieeLkeeLe~l~~eLe~~n~El~nLq~eLe 503 (784)
.+..++...+.+..+|...+.+...+...+... -..+++ -++.++.++.....++.....-+.+-+..+.
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh~t-------rdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~ 210 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIELHHT-------RDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVN 210 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455555556666666666666666553221100 001111 1334444444444444444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 504 QYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILV 552 (784)
Q Consensus 504 qlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~e 552 (784)
.+-...+ -++..+..++.+.-=|+..|..+....+...+-+-.+..
T Consensus 211 k~~~Kqe---s~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~ 256 (305)
T PF14915_consen 211 KYIGKQE---SLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQD 256 (305)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5433333 345555555666666666666666655554444444443
No 181
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.01 E-value=7.9 Score=43.63 Aligned_cols=7 Identities=14% Similarity=0.501 Sum_probs=2.8
Q ss_pred cchhccc
Q 003944 745 PLKEIFG 751 (784)
Q Consensus 745 ~~~~~~~ 751 (784)
|+..+|+
T Consensus 411 ~~~~~~~ 417 (423)
T TIGR01843 411 PITDSVQ 417 (423)
T ss_pred HHHHHHH
Confidence 4444433
No 182
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.92 E-value=5.2 Score=41.06 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~ 415 (784)
.+...|..++.+++..+....-+...|....+...+.+.
T Consensus 8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er 46 (205)
T KOG1003|consen 8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESER 46 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 566677788888888888888888888877777666644
No 183
>PF13514 AAA_27: AAA domain
Probab=94.86 E-value=18 Score=46.87 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=26.9
Q ss_pred hhhcHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhH
Q 003944 209 ADLLEEKNRSLA---AERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESF 261 (784)
Q Consensus 209 ~~m~e~err~i~---a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~L 261 (784)
+|..-+.+..-. +..+.+...+..+...+......+..+...++.....+..+
T Consensus 535 aD~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 590 (1111)
T PF13514_consen 535 ADELADRRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAAL 590 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454333 44444555555555555555555555555555555444433
No 184
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=94.77 E-value=0.066 Score=42.42 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHhcCCh--hHHHHHHHHhcCCCHHHHHHh
Q 003944 600 VDRRIVIKLLVTYFQRNHS--KEVLDLMVRMLGFSDEDKQRI 639 (784)
Q Consensus 600 VDk~lv~nL~~~y~~~~~~--~evL~Lia~~L~~~~eek~k~ 639 (784)
+|-.-++|++++|+..... ..++.+||.+|.||.+|..++
T Consensus 2 ~n~eYLKNVll~fl~~~e~~r~~ll~vi~tlL~fs~~e~~~~ 43 (46)
T smart00755 2 ANFEYLKNVLLQFLTLRESERETLLKVISTVLQLSPEEMQKL 43 (46)
T ss_pred ccHHHHHHHHHHHhccCcchHHHHHHHHHHHhCCCHHHHHHH
Confidence 4677899999999997655 699999999999999998875
No 185
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.76 E-value=10 Score=45.22 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
.+.+++..+.++..+...+.++++.++.+++....
T Consensus 169 ~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 169 AWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555555555555555555555543
No 186
>PRK10698 phage shock protein PspA; Provisional
Probab=94.65 E-value=5.2 Score=42.13 Aligned_cols=139 Identities=9% Similarity=0.142 Sum_probs=87.6
Q ss_pred ccccchhHHhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHH
Q 003944 200 KMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEI 279 (784)
Q Consensus 200 vmqgd~t~~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei 279 (784)
++.|++..+++-.++=.+.|--.+.+++..+.+++..+..+-.....+..++.+...........-.-.-..-+. .+
T Consensus 10 ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~E---dL 86 (222)
T PRK10698 10 IVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKE---DL 86 (222)
T ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HH
Confidence 577888888888887666666888888888888888888888777777888877777777766652222211111 11
Q ss_pred HHH-HHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 280 TEM-RKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 280 ~~L-~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e 346 (784)
.+- ..+-......+..|+.++.... ..++.|+..+..|...+.+.+.+...|-.........
T Consensus 87 Ar~AL~~K~~~~~~~~~l~~~~~~~~-----~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 87 ARAALIEKQKLTDLIATLEHEVTLVD-----ETLARMKKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1222233455556666654222 2666777777777777777777777776665555443
No 187
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.64 E-value=4.5 Score=38.99 Aligned_cols=71 Identities=25% Similarity=0.212 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 510 EAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVE 583 (784)
Q Consensus 510 Ea~erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLd 583 (784)
..+..++.++..++.++..+......+...+...+..- ..+-..++..+.+++.++..|...+..|..+|+
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw---~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASW---EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444443333221 122335566666677666667777777776665
No 188
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.49 E-value=5.6 Score=49.05 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 382 LQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 382 Ie~Le~ELeele~e~~ka~~EL~rLr~e 409 (784)
.+.+...+.++..+...++.++...+.+
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555556555554
No 189
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.46 E-value=9.5 Score=41.95 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 003944 523 REESAKLSEYLKNA 536 (784)
Q Consensus 523 reEie~L~~eLkea 536 (784)
.+..+.|...+.+.
T Consensus 281 ~erreal~R~lses 294 (310)
T PF09755_consen 281 VERREALCRHLSES 294 (310)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 190
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.19 E-value=6.1 Score=38.73 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003944 435 NEYQRAQILHLENVLKQT 452 (784)
Q Consensus 435 ~e~lr~eL~~lEreLk~l 452 (784)
.+.+...+..+++++..+
T Consensus 19 ~dsle~~v~~LEreLe~~ 36 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMS 36 (140)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 191
>PRK10869 recombination and repair protein; Provisional
Probab=94.17 E-value=16 Score=43.55 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 312 ieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
...+...++++.....+..++++-|+-+++....
T Consensus 166 ~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 166 WHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555556666555555543
No 192
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=0.83 Score=53.69 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=44.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRS 545 (784)
Q Consensus 467 I~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~ 545 (784)
+..+...++.|+.+...+...++.++.++..|..+++++..+.....+...+++.+..++..|..+|.+....++.|+.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555556666666666666666665555544445555555555555555555555555544444
No 193
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.06 E-value=10 Score=40.74 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=30.0
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 273 DKTSIEITEMRKELNGKLSELRRLQMELNRRED--GDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 273 ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~--e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
......+..+..++..+..+++.|..+....-. .......+.....-..|...+..+...|.++..++.....
T Consensus 41 ~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 41 NPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 333334444444444444444444444431111 0111233333333444444444444455555555444443
No 194
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.02 E-value=8.5 Score=40.28 Aligned_cols=137 Identities=11% Similarity=0.108 Sum_probs=81.0
Q ss_pred ccccchhHHhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHH
Q 003944 200 KMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEI 279 (784)
Q Consensus 200 vmqgd~t~~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei 279 (784)
++.|++..+++=.++=.+.|--.+.+++..+.+++..|..+-..-..++.++.+...........-.-.-..-+ ..+
T Consensus 10 iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~---EdL 86 (219)
T TIGR02977 10 IVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGR---EDL 86 (219)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHH
Confidence 46778888888888766666688888888888888888888877777777777777777666665222222111 111
Q ss_pred HH-HHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 280 TE-MRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 280 ~~-L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~ 344 (784)
.+ ...+....+..+..++.++.... ..++.|+..+..++.++...+.....|-......+
T Consensus 87 Ar~Al~~k~~~~~~~~~l~~~~~~~~-----~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 87 ARAALIEKQKAQELAEALERELAAVE-----ETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11233334455555555554222 25555555555565555555555555544444333
No 195
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.92 E-value=13 Score=41.33 Aligned_cols=28 Identities=25% Similarity=0.117 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 386 EKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 386 e~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
..-+..+......+..++..|++...+.
T Consensus 171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 171 NSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333334444444444555444444433
No 196
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.91 E-value=19 Score=43.40 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 003944 565 KGRANKLEEDNAKLR 579 (784)
Q Consensus 565 K~ei~kL~~eie~L~ 579 (784)
..++..|..+.+.|+
T Consensus 509 ~ke~~~Le~En~rLr 523 (716)
T KOG4593|consen 509 LKELELLEEENDRLR 523 (716)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444555555555
No 197
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.81 E-value=9.5 Score=39.56 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 003944 382 LQKLEKDLKETC 393 (784)
Q Consensus 382 Ie~Le~ELeele 393 (784)
|..|+.++.++.
T Consensus 29 IksLKeei~emk 40 (201)
T PF13851_consen 29 IKSLKEEIAEMK 40 (201)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 198
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.73 E-value=9.3 Score=39.74 Aligned_cols=133 Identities=23% Similarity=0.257 Sum_probs=82.3
Q ss_pred ccccchhHHhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHH
Q 003944 200 KMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEI 279 (784)
Q Consensus 200 vmqgd~t~~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei 279 (784)
++.|+++.+++-.++-.+.+-..+.+++..+.+++..+..+...-..+..++++.......+.......-..- ..++
T Consensus 9 ~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g---~edL 85 (221)
T PF04012_consen 9 LVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG---REDL 85 (221)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHH
Confidence 5778888999988776655558888999999999999988888888888888887777777776643332211 1122
Q ss_pred H-HHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 280 T-EMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAAL 340 (784)
Q Consensus 280 ~-~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eL 340 (784)
. ....+...++..+..++..+..... .++.|+..+..+...+.+++.+...|....
T Consensus 86 Ar~al~~k~~~e~~~~~l~~~~~~~~~-----~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 86 AREALQRKADLEEQAERLEQQLDQAEA-----QVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2233444455555555555542222 455555555555555555554444444333
No 199
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.64 E-value=3.7 Score=39.20 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 470 SKEIIDGLNNKLANCMRTIEAKNVELLNLQTALG 503 (784)
Q Consensus 470 l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLe 503 (784)
++.++..++.++..+..+.+..+.++-.|-...+
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433333
No 200
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.58 E-value=8.3 Score=46.91 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=22.0
Q ss_pred HhHhhhhHHHHhhhhHhhhhhhccCCCCC
Q 003944 90 IKALSVNYAALLKEKEEQISRLNGEYGLL 118 (784)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~g~NGSg 118 (784)
..+..-|.++|..-.==+|+=+.|+-|||
T Consensus 266 ~~aIArnl~amasl~VP~ISVViGeggSG 294 (762)
T PLN03229 266 GEAIAHNLRTMFGLKVPIVSIVIGEGGSG 294 (762)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCcchH
Confidence 45666677777666677888889999988
No 201
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.53 E-value=22 Score=42.89 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=10.2
Q ss_pred CCCCCCChhHHHHHHHHHH
Q 003944 64 GFESPHDPEIERYKAEIKR 82 (784)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~ 82 (784)
|.+||...+--+|+--+.-
T Consensus 48 s~~~~~~s~n~~~~s~~~~ 66 (716)
T KOG4593|consen 48 SMQSEERSENITSKSLLMQ 66 (716)
T ss_pred CCCchhhhccchhHHHHHH
Confidence 4456665555556554433
No 202
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=93.53 E-value=0.097 Score=57.47 Aligned_cols=133 Identities=16% Similarity=0.193 Sum_probs=7.4
Q ss_pred hhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHh
Q 003944 209 ADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNG 288 (784)
Q Consensus 209 ~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~e 288 (784)
+.++|.+||.+++.+..+..-+..-...|....+++..++-.+......+..+...+-.+...+......+..+..+|..
T Consensus 2 ~gLsp~QRREVV~LILslTss~s~s~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~s 81 (326)
T PF04582_consen 2 AGLSPSQRREVVGLILSLTSSISTSPGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNS 81 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHhhhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999988888877766666677777766666666666655555555555555555555555556666666666
Q ss_pred HHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 289 KLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 289 le~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e 346 (784)
+...|..++..+.... ..|..+...+......+..|...++.+.-++..++.+
T Consensus 82 LsstV~~lq~Sl~~ls-----ssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksd 134 (326)
T PF04582_consen 82 LSSTVTSLQSSLSSLS-----SSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSD 134 (326)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----hhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhh
Confidence 6666666665554222 1344444444444444444444444444444444433
No 203
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.50 E-value=17 Score=41.60 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 313 eeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
+.......-+..++.+++.++...+..+...+....
T Consensus 167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 202 (444)
T TIGR03017 167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKG 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334445677777777888888888888888877654
No 204
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.49 E-value=3 Score=44.71 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=25.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 551 LVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 551 ~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~ 590 (784)
+.++.-++..+...+..+.+|..++..|...|+.+.+-..
T Consensus 94 e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344445555666666666777777777777777765443
No 205
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.28 E-value=10 Score=38.25 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 515 LERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLS-----HSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRL 589 (784)
Q Consensus 515 le~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~-----~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl 589 (784)
++.++......+..+..++..++.+.+.+......+..+.. .+-.+|......+..++..+..+++.++.+-+++
T Consensus 96 l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 96 LKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333334444444444444444444444444444443322 1222344455556667777777777777777665
Q ss_pred h
Q 003944 590 N 590 (784)
Q Consensus 590 ~ 590 (784)
+
T Consensus 176 ~ 176 (177)
T PF13870_consen 176 K 176 (177)
T ss_pred c
Confidence 4
No 206
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.25 E-value=11 Score=40.60 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 003944 222 ERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 222 ~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~ 301 (784)
.+.+++..+++|+.+-.+- +-+|+..++.+.+-+.+.+.-......+.-+...+......++..-+.+.-+|.
T Consensus 19 KIqelE~QldkLkKE~qQr-------QfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQR-------QFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
Confidence 4444444444444443333 333444344444444443333332333333444444444445555555555554
Q ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 302 RREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 302 ~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
-++. .|.-|...+....+.+..|..++..+..+++..+....
T Consensus 92 ~Ke~-----qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 92 VKES-----QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333 66666667777777777777788888888887766544
No 207
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.16 E-value=21 Score=41.47 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 563 EGKGRANKLEEDNAKLRLAVEQSMTRL 589 (784)
Q Consensus 563 dlK~ei~kL~~eie~L~kaLdkAl~rl 589 (784)
+...++..++.++..++..|..+-..+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555554444
No 208
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=93.08 E-value=35 Score=43.93 Aligned_cols=27 Identities=7% Similarity=0.062 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 313 ENLKRVVATLEKENNSLKMEKTELVAA 339 (784)
Q Consensus 313 eeLq~eieeL~kei~eLe~ei~eLe~e 339 (784)
..++..+..+...+..+...+..+...
T Consensus 619 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ 645 (1047)
T PRK10246 619 HELQGQIAAHNQQIIQYQQQIEQRQQQ 645 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455444444444444444
No 209
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.06 E-value=2.8 Score=40.01 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 003944 571 LEEDNAKLR 579 (784)
Q Consensus 571 L~~eie~L~ 579 (784)
|+.|+..++
T Consensus 101 L~~Dv~DlK 109 (120)
T PF12325_consen 101 LRADVQDLK 109 (120)
T ss_pred HHHHHHHHH
Confidence 333443333
No 210
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=93.00 E-value=16 Score=44.16 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 310 ~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~ 344 (784)
.-.++|..++......+...+.....|+..++-..
T Consensus 91 d~ndklE~~Lankda~lrq~eekn~slqerLelaE 125 (916)
T KOG0249|consen 91 DLNDKLENELANKDADLRQNEEKNRSLQERLELAE 125 (916)
T ss_pred cchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhh
Confidence 34445554444444444444444444444444433
No 211
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.68 E-value=24 Score=43.11 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 389 LKETCSERDKALQELTRLKQHLIEKAQEESEKM-DEDSKIIEELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 389 Leele~e~~ka~~EL~rLr~eL~e~E~e~qe~l-d~~sk~I~EL~~~~e~lr~eL~~lEreLk~l 452 (784)
++-++.+...+...|.-|-+.+.+.+......- ...+-++-.|+..+-.+..++.+..+.++.+
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~l 453 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELL 453 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 555555666666777777777766654331110 1122344445544444555555554444444
No 212
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.68 E-value=40 Score=43.53 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003944 275 TSIEITEMRKELNGKLSELRRLQMEL 300 (784)
Q Consensus 275 ~~~Ei~~L~~EL~ele~EL~~LqeeL 300 (784)
....+.....++.+.+.++...++.+
T Consensus 107 Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 107 LEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444455555555555555555444
No 213
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.45 E-value=3.8 Score=50.23 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=3.7
Q ss_pred hhhcccCC
Q 003944 15 IALDVHYD 22 (784)
Q Consensus 15 ~~~~~~~~ 22 (784)
|.+|+.++
T Consensus 313 i~l~~~~~ 320 (717)
T PF10168_consen 313 ILLEAEED 320 (717)
T ss_pred EEeccccc
Confidence 44455444
No 214
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.24 E-value=26 Score=40.40 Aligned_cols=102 Identities=16% Similarity=0.291 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHH
Q 003944 221 AERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQ---RLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQ 297 (784)
Q Consensus 221 a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~---~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~Lq 297 (784)
.-++.|++-...+..+++..+...+++-..+.++. .....|.++++.+..+.-+...-+..+.....+--..+.+|+
T Consensus 257 Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~ 336 (622)
T COG5185 257 ELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLK 336 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 44555555555555666666655555555555544 334445555666665555555555555555555555555555
Q ss_pred HHHhhhhcCCchHHHHHHHHHHHHHHHHHH
Q 003944 298 MELNRREDGDANDVVENLKRVVATLEKENN 327 (784)
Q Consensus 298 eeL~~~e~e~~~~tieeLq~eieeL~kei~ 327 (784)
.++..+++ ++..|+..++.|.++++
T Consensus 337 ~eie~kEe-----ei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 337 SEIELKEE-----EIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHH-----HHHHHHhhHHHHHHHHH
Confidence 55554443 44455555555544443
No 215
>COG1106 Predicted ATPases [General function prediction only]
Probab=92.23 E-value=0.069 Score=59.98 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=23.7
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhccccc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNG 135 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~ 135 (784)
.|.-..|+|||||||+ +|+-|..|+.+..
T Consensus 23 ~in~I~G~N~sGKSNlleAl~f~~~~~~~~ 52 (371)
T COG1106 23 KINIIYGANGAGKSNLLEALYFLKGLISPG 52 (371)
T ss_pred ceEEEEcCCCCchhHHHHHHHHHHHhccCC
Confidence 4666789999999999 9999977765543
No 216
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.91 E-value=18 Score=37.79 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003944 570 KLEEDNAKLRLAVEQSM 586 (784)
Q Consensus 570 kL~~eie~L~kaLdkAl 586 (784)
....++..|.+--|.-|
T Consensus 186 QK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 186 QKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 217
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.91 E-value=17 Score=37.63 Aligned_cols=105 Identities=20% Similarity=0.215 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003944 484 CMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAE 563 (784)
Q Consensus 484 l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~d 563 (784)
+..-+.....++..|+..+..++.....+...+..+..+..++..|..+-..+.++...+..|..++..+.. ..+.+
T Consensus 60 L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~---~~i~e 136 (201)
T PF13851_consen 60 LSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE---SAIQE 136 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 333444444555555555555555555555555555556666666666666666666666666666655433 22222
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 564 GKGR----ANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 564 lK~e----i~kL~~eie~L~kaLdkAl~rl~~ 591 (784)
+... -.-|...+..+...|++.-..|..
T Consensus 137 vqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 137 VQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 122666666666666666665554
No 218
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.90 E-value=5.1 Score=40.62 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHH
Q 003944 229 QTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQ 297 (784)
Q Consensus 229 ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~Lq 297 (784)
++..+...+....++++.++..+.+....+..++..........+....++..+...++++..++..+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444445555544444444444433333233333344444444444444444444
No 219
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.83 E-value=24 Score=39.11 Aligned_cols=7 Identities=29% Similarity=0.871 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 003944 474 IDGLNNK 480 (784)
Q Consensus 474 ieeLkee 480 (784)
++.|+.+
T Consensus 153 ~~~l~~D 159 (312)
T smart00787 153 LEGLKED 159 (312)
T ss_pred HHHHHHH
Confidence 3333333
No 220
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.80 E-value=12 Score=43.42 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 382 Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
.+.|...|..+..+...+..+..-++.+-..-
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~ 192 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTY 192 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcch
Confidence 55667777777666666666666666554333
No 221
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.76 E-value=22 Score=38.40 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=25.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 003944 465 SEIQKSKEIIDGLNNKLANCMRTIE-----------AKNVELLNLQTALGQY 505 (784)
Q Consensus 465 ~eI~~l~eqieeLkeeLe~l~~eLe-----------~~n~El~nLq~eLeql 505 (784)
..+..+..+++.|..++.....++. -+...+.+|.+.++++
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~l 132 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQL 132 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 4456666777777777766666655 2334566666666654
No 222
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=30 Score=39.85 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
.+...|..+..-+......+.+...+-..|+.+.+..
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~ 422 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSE 422 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445555555555555444433
No 223
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.48 E-value=26 Score=38.70 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003944 221 AERAAYESQTRQLRMELEQQRNKFADVQLKLQEE 254 (784)
Q Consensus 221 a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~ 254 (784)
...+.+.++-..++.+|+..+.+...+...+...
T Consensus 27 ~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~l 60 (310)
T PF09755_consen 27 KRIESLQQENRVLKRELETEKARCKHLQEENRAL 60 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666667766666665555555443
No 224
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.48 E-value=8.3 Score=47.41 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 382 LQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 382 Ie~Le~ELeele~e~~ka~~EL~rLr~eL 410 (784)
.+.++.-|.+.-.+++.+..++++++.++
T Consensus 687 ~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 687 KRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666666666666666554
No 225
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.39 E-value=41 Score=40.88 Aligned_cols=189 Identities=20% Similarity=0.240 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhH-------hHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHH
Q 003944 221 AERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNE-------SFQDELKSLKMDKDKTSIEITEMRKELNGKLSEL 293 (784)
Q Consensus 221 a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le-------~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL 293 (784)
..+.++.....++..++...+.++..+-..|-+...... .|++.+..+...++-.......-.+++.+...+|
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi 133 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI 133 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666665555544332222 5666666666655555556666677777888888
Q ss_pred HHHHHHHhhhh---------cCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccc
Q 003944 294 RRLQMELNRRE---------DGDAN-DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD 363 (784)
Q Consensus 294 ~~LqeeL~~~e---------~e~~~-~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~ 363 (784)
+.+-.+|.+.+ ..+.+ ..+++++..+..|+++...-..++..+..+|...-..+......-+.++...+.
T Consensus 134 e~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~ 213 (660)
T KOG4302|consen 134 EKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLV 213 (660)
T ss_pred HHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhh
Confidence 88888886441 22333 788999999999999999988899999999888877766444433323222222
Q ss_pred cccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 364 GKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 364 ~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
+... ...+--....++.|..-+..+..++.+....+..+...+.+.
T Consensus 214 -~~~~---~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~L 259 (660)
T KOG4302|consen 214 -DHDG---EQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLEL 259 (660)
T ss_pred -hccC---cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 000113345577777777777777777777788888777665
No 226
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.38 E-value=5.8 Score=46.92 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHH
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLK 390 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELe 390 (784)
+++.|+.++..|...+.++++++..|..+++.++.....++. +. + ....++..|..|+.+|.
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~---------~~----r-----ei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVR---------KD----R-----EIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hh----H-----HHHHHHHHHHHHHHHHH
Confidence 566666666666666666667777777777766655431111 00 0 11145555666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003944 391 ETCSERDKALQELTRLK 407 (784)
Q Consensus 391 ele~e~~ka~~EL~rLr 407 (784)
+-...++.+..+|.+++
T Consensus 492 e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 492 EKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555555555555554
No 227
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.31 E-value=32 Score=39.46 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 378 MEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 378 LE~~Ie~Le~ELeele~e~~ka~~EL~rLr~e 409 (784)
....++.++.++.+++.+...++..|...+.+
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555544
No 228
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.20 E-value=14 Score=44.49 Aligned_cols=82 Identities=24% Similarity=0.281 Sum_probs=36.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 466 EIQKSKEIIDGLNNKLANCMRTIEAK---NVEL-----LNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNAD 537 (784)
Q Consensus 466 eI~~l~eqieeLkeeLe~l~~eLe~~---n~El-----~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak 537 (784)
.+..+..+++++..+|..+...++.- +..+ .-|+-.+.+..+.++.++++..+++.++..++.+...-+.+.
T Consensus 164 r~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~ 243 (916)
T KOG0249|consen 164 RTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLR 243 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666554433210 0000 234444444444445555555555444444444444444444
Q ss_pred HHHHHHHHHH
Q 003944 538 QRAEVSRSEK 547 (784)
Q Consensus 538 ~eie~l~~El 547 (784)
..++.+..++
T Consensus 244 ~d~E~Lr~e~ 253 (916)
T KOG0249|consen 244 TDIEDLRGEL 253 (916)
T ss_pred hhHHHHHHHH
Confidence 4444444333
No 229
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.10 E-value=21 Score=38.25 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.3
Q ss_pred chhhhh
Q 003944 683 IYGLTF 688 (784)
Q Consensus 683 Sfs~lw 688 (784)
+|.-++
T Consensus 200 ALgyva 205 (302)
T PF10186_consen 200 ALGYVA 205 (302)
T ss_pred HHHHHH
Confidence 333333
No 230
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.09 E-value=15 Score=35.36 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 384 KLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 384 ~Le~ELeele~e~~ka~~EL~rLr~e 409 (784)
.++.++..+......+...+..++..
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~d 32 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLRED 32 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444333333333333333333
No 231
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.08 E-value=9.6 Score=40.43 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 515 LERELALAREESAKLSEYLKNADQRAEVSRSEKE 548 (784)
Q Consensus 515 le~El~~LreEie~L~~eLkeak~eie~l~~Ele 548 (784)
+..+...|..|.....++|.+..+.|..++..+.
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk 70 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIK 70 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555544433
No 232
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.04 E-value=4.4 Score=44.90 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 568 ANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 568 i~kL~~eie~L~kaLdkAl~rl~~ 591 (784)
.....++...+...++.+...|.+
T Consensus 108 l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 108 LIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 233
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.66 E-value=41 Score=39.59 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=30.4
Q ss_pred HHhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHH
Q 003944 207 ELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDEL 265 (784)
Q Consensus 207 ~~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel 265 (784)
+|..-+-+-|..++..+....++|.+|++|-+.-.=+-+-.+.+|+...+++..++.+.
T Consensus 295 ril~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekev 353 (518)
T PF10212_consen 295 RILLSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEV 353 (518)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666666666555533212222334444445555454443
No 234
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.64 E-value=18 Score=35.44 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=33.1
Q ss_pred hchhhhccCCccccccc----cccchhHHhhhcH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003944 184 VSNGSHALQTEVVQSSK----MQGKEKELADLLE---EKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQE 253 (784)
Q Consensus 184 ~~~l~~~~i~p~gyn~v----mqgd~t~~~~m~e---~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE 253 (784)
..-|...|..+.|.... ...|+..||+..- ..+..-......+..++..+..++......+++++.++++
T Consensus 8 N~~L~s~G~~~~~~~~~~~~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~ 84 (151)
T PF11559_consen 8 NQQLLSRGYPSDGLLFDSAEESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEE 84 (151)
T ss_pred HHHHHHCCCCCCCccCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455566666554422 2345555555422 2333333444445555555555555555555444444444
No 235
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.98 E-value=31 Score=37.07 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 513 GHLERELALAREESAKLSEYLKNADQRAEVS 543 (784)
Q Consensus 513 erle~El~~LreEie~L~~eLkeak~eie~l 543 (784)
..+...+.+...++.+++..+.++...+...
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea 211 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREA 211 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555554444333
No 236
>PLN02939 transferase, transferring glycosyl groups
Probab=89.87 E-value=67 Score=40.84 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 003944 435 NEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVE---LLNLQTALGQYFAEIEA 511 (784)
Q Consensus 435 ~e~lr~eL~~lEreLk~l~~~~e~l~~~n~~eI~~l~eqieeLkeeLe~l~~eLe~~n~E---l~nLq~eLeqlq~eiEa 511 (784)
..-+++-+..+|.++-.+.++.-++ ..-+...+=+.++.|+.-|.....+.+..-.- -..|+.+++.++.-+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (977)
T PLN02939 266 RSLLDASLRELESKFIVAQEDVSKL---SPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKE 342 (977)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3445566666666665554332111 11222234444555555555444444433222 23455555555544443
No 237
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.86 E-value=7.8 Score=41.09 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=3.9
Q ss_pred hhccCcc
Q 003944 719 LQRLAPL 725 (784)
Q Consensus 719 ~~~~~~~ 725 (784)
-+.+||.
T Consensus 188 ~~Q~PPM 194 (230)
T PF10146_consen 188 RQQPPPM 194 (230)
T ss_pred cccCCCc
Confidence 3556665
No 238
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=89.53 E-value=0.18 Score=55.76 Aligned_cols=33 Identities=27% Similarity=0.193 Sum_probs=26.0
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKAS 140 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~ 140 (784)
+.=|+|||||||+-+ |||-.||.....-.++-.
T Consensus 26 ttIivgpNGsGKTtvLdair~aL~~fid~~i~~~ 59 (440)
T COG3950 26 TTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLR 59 (440)
T ss_pred eEEEECCCCCChhhHHHHHHHHHHhhccceeecc
Confidence 566899999999999 999999986654444333
No 239
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.04 E-value=31 Score=35.86 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh
Q 003944 534 KNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQS-MTRLNR 591 (784)
Q Consensus 534 keak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLdkA-l~rl~~ 591 (784)
..+..+++.+..++.....+.......+..=+.-|..=++.+-.|.+.|... +.||++
T Consensus 134 ~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~r 192 (202)
T PF06818_consen 134 GSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQR 192 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333322222222222223555566677788888653 344443
No 240
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.86 E-value=0.3 Score=49.71 Aligned_cols=19 Identities=16% Similarity=-0.027 Sum_probs=15.4
Q ss_pred hhhccCCCCCcchh-hHHHH
Q 003944 109 SRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f 127 (784)
.=|+||.||||+-| ..++.
T Consensus 7 ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 45899999999999 77543
No 241
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.70 E-value=9 Score=42.47 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 515 LERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVE 583 (784)
Q Consensus 515 le~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLd 583 (784)
+..++..+..+.+.+..++..++.+...+..+-...-.....+...+.....+...+...+.....+|+
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333333333334444444444444445555555555553
No 242
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.54 E-value=39 Score=36.28 Aligned_cols=11 Identities=0% Similarity=0.268 Sum_probs=4.5
Q ss_pred HHHHHHHhcCC
Q 003944 621 VLDLMVRMLGF 631 (784)
Q Consensus 621 vL~Lia~~L~~ 631 (784)
+++.++.+..+
T Consensus 149 l~~~l~~ifpI 159 (302)
T PF10186_consen 149 LIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHhCc
Confidence 33444444443
No 243
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=88.47 E-value=49 Score=37.41 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 308 ANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 308 ~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
.++..+-|..++..|..++...+.+...++..+...+....
T Consensus 289 ~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~ 329 (593)
T KOG4807|consen 289 PSDGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHI 329 (593)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccC
Confidence 34567777777888877777777777777777666665543
No 244
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.35 E-value=32 Score=36.82 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 003944 565 KGRANKLEEDNAKLRLAVEQSMTRLNRMSVD 595 (784)
Q Consensus 565 K~ei~kL~~eie~L~kaLdkAl~rl~~~~~~ 595 (784)
..+...++.++...+..+..+..+|+.....
T Consensus 102 e~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~ 132 (246)
T PF00769_consen 102 EEEAEELQEELEEAREDEEEAKEELLEVMSA 132 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344457777777778888887777654433
No 245
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.93 E-value=58 Score=37.61 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQ 504 (784)
Q Consensus 469 ~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeq 504 (784)
.+...+...++++.....+-.+...+++.+..++.+
T Consensus 393 Ei~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 393 EIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444444444334444444444444443
No 246
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=87.70 E-value=67 Score=38.06 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=7.3
Q ss_pred HhcCCCHHHHHHh
Q 003944 627 RMLGFSDEDKQRI 639 (784)
Q Consensus 627 ~~L~~~~eek~k~ 639 (784)
..++|.++-+.++
T Consensus 444 ~~~~~~~d~~~r~ 456 (511)
T PF09787_consen 444 KYSNSEDDAESRV 456 (511)
T ss_pred hhccCCCchhhhh
Confidence 4456666655554
No 247
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.69 E-value=44 Score=37.09 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 384 KLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 384 ~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~ 415 (784)
.++.-+..+..+...++-.|+.+.++..++++
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekee 162 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECGEKEE 162 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHH
Confidence 34444444444555555566666666555544
No 248
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=87.62 E-value=56 Score=37.91 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCc
Q 003944 568 ANKLEEDNAKLRLAVEQSMTRLNRMSVDS 596 (784)
Q Consensus 568 i~kL~~eie~L~kaLdkAl~rl~~~~~~~ 596 (784)
+..|..+++..+..++.-+.++.......
T Consensus 375 l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 375 LRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44577778888888888888887655443
No 249
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.45 E-value=60 Score=37.25 Aligned_cols=134 Identities=12% Similarity=0.066 Sum_probs=59.7
Q ss_pred Hhhhc-HHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHH
Q 003944 208 LADLL-EEKNRSL--AAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRK 284 (784)
Q Consensus 208 ~~~m~-e~err~i--~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~ 284 (784)
+.|+. |+.+|-. +.|+..|-.=.+.........-...+.+...-...++....+..++...+.+-.+...++..+..
T Consensus 101 ~~DLlkPes~Rtq~~LSavvNfa~fRe~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe 180 (446)
T KOG4438|consen 101 FKDLLKPESSRTQRFLSAVVNFALFREEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEE 180 (446)
T ss_pred hhhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHH
Confidence 56666 6655543 37777764433332222222222222222222222333555666666666655566666666665
Q ss_pred HHHhHHHHHHHHHHHHhhhhcCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 285 ELNGKLSELRRLQMELNRREDGDANDVVENLK-RVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 285 EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq-~eieeL~kei~eLe~ei~eLe~eLe~~~~e 346 (784)
.++++...+-..-..-...-. +-.+.+ .......+....+.--+..|++..+.++..
T Consensus 181 ~ieeL~qsl~kd~~~~~~l~~-----e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~Lktq 238 (446)
T KOG4438|consen 181 NIEELNQSLLKDFNQQMSLLA-----EYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQ 238 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544433332222110001 111111 123334444555555566666555555544
No 250
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.13 E-value=15 Score=41.54 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=59.1
Q ss_pred HhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHH
Q 003944 208 LADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELN 287 (784)
Q Consensus 208 ~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ 287 (784)
|-+++++-+..+-.....+..-++++...=+..-..++.+-..+.....++...+++.+.+.. -+..+..+|.
T Consensus 232 I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~-------~V~~~t~~L~ 304 (359)
T PF10498_consen 232 IESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASE-------GVSERTRELA 304 (359)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHH
Confidence 444444444444444444433333333333333333333333333333333333333333322 5555555666
Q ss_pred hHHHHHHHHHHHHhhhhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 288 GKLSELRRLQMELNRREDGD-ANDVVENLKRVVATLEKENNSLKMEKTELV 337 (784)
Q Consensus 288 ele~EL~~LqeeL~~~e~e~-~~~tieeLq~eieeL~kei~eLe~ei~eLe 337 (784)
+...+++.++.++..+...- ....+-.++..+..|..++.++.-.|.-++
T Consensus 305 ~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 305 EISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence 66666666666665332211 114666777777777777777666665443
No 251
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.00 E-value=86 Score=38.59 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 318 VVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 318 eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
.+.-|..++..|++.+.-|+..+.+..+
T Consensus 388 A~QplrsENaqLrRrLrilnqqlreqe~ 415 (861)
T PF15254_consen 388 AMQPLRSENAQLRRRLRILNQQLREQEK 415 (861)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3667777888888888888887776544
No 252
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=86.68 E-value=21 Score=36.01 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=31.9
Q ss_pred hhhhchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 459 FKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALG 503 (784)
Q Consensus 459 l~~~n~~eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLe 503 (784)
+.+.+..++..++..|..|.+++..+.........++..|...|.
T Consensus 73 F~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt 117 (201)
T KOG4603|consen 73 FDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT 117 (201)
T ss_pred hcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444556677777777888887777777777777777777766654
No 253
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=86.67 E-value=37 Score=34.06 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=21.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 464 HSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 510 (784)
Q Consensus 464 ~~eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiE 510 (784)
+.+|...=++...++-+|..+..+-.........|+..+..+..-++
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tie 122 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIE 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555554444444444444444444444433333
No 254
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=86.66 E-value=47 Score=35.18 Aligned_cols=193 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHH
Q 003944 381 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENV---LKQTLAKQE 457 (784)
Q Consensus 381 ~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~~~e~lr~eL~~lEre---Lk~l~~~~e 457 (784)
.|+.++.. ....+....+...+......+.+. .......+.+.+.|..+-.....++.+|..+... .......
T Consensus 2 ~L~~l~~~-~~~~~~~~~~i~~l~~al~~L~~~-~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~-- 77 (240)
T PF12795_consen 2 QLDQLNKR-KLDEPEQKALIQDLQQALSFLDEI-KKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILAN-- 77 (240)
T ss_pred hHhHhhcc-CCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCccc--
Q ss_pred HhhhhchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---------HH
Q 003944 458 EFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK----GHLERELALA---------RE 524 (784)
Q Consensus 458 ~l~~~n~~eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~----erle~El~~L---------re 524 (784)
.-+..+...+......+......+...+..+..++...+.++..+.+. ..+...+..+ ..
T Consensus 78 -------~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a 150 (240)
T PF12795_consen 78 -------LSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEA 150 (240)
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 525 ESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQ 584 (784)
Q Consensus 525 Eie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLdk 584 (784)
....+..++.-+..++.-+..++........-....+.-++.++..+...+..|...|..
T Consensus 151 ~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 151 QRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 255
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.52 E-value=51 Score=37.33 Aligned_cols=9 Identities=0% Similarity=-0.400 Sum_probs=3.4
Q ss_pred hhchhhhcc
Q 003944 183 GVSNGSHAL 191 (784)
Q Consensus 183 ~~~~l~~~~ 191 (784)
|...|-+.|
T Consensus 76 Il~~lr~~g 84 (359)
T PF10498_consen 76 ILDELRKLG 84 (359)
T ss_pred HHHHHHccC
Confidence 333333333
No 256
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=86.52 E-value=31 Score=39.45 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL 410 (784)
.....+..+..++.++......+...+++|+.++
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~ 242 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQY 242 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777777777776654
No 257
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.51 E-value=34 Score=33.48 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 003944 574 DNAKLRLAV 582 (784)
Q Consensus 574 eie~L~kaL 582 (784)
+++.|.+.|
T Consensus 141 E~~kLk~rL 149 (151)
T PF11559_consen 141 EIEKLKERL 149 (151)
T ss_pred HHHHHHHHh
Confidence 344444433
No 258
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=86.23 E-value=26 Score=40.06 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=24.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALG 503 (784)
Q Consensus 467 I~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLe 503 (784)
++..++.+.+++++|+....+-.....+.-+|.+.++
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ 290 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD 290 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence 3455666777777777776665555566666666665
No 259
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=86.08 E-value=81 Score=37.37 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003944 222 ERAAYESQTRQLRMELEQQ 240 (784)
Q Consensus 222 ~~a~~e~ei~~l~~ELe~~ 240 (784)
...++++++..++..|+..
T Consensus 117 ~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 117 RLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666
No 260
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=86.07 E-value=56 Score=38.25 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 388 DLKETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 388 ELeele~e~~ka~~EL~rLr~eL~e 412 (784)
-++.++........+..+++.+..-
T Consensus 160 ~~EaL~ekLk~~~een~~lr~k~~l 184 (596)
T KOG4360|consen 160 LLEALQEKLKPLEEENTQLRSKAML 184 (596)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHH
Confidence 3444555566666777777666433
No 261
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=85.79 E-value=42 Score=33.81 Aligned_cols=127 Identities=23% Similarity=0.246 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 427 IIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYF 506 (784)
Q Consensus 427 ~I~EL~~~~e~lr~eL~~lEreLk~l~~~~e~l~~~n~~eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq 506 (784)
.|..++-....++..+..++..+..... +. + ..--..|+.|+-+...+...+++.+.++..|.......
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~----lg-----e-~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~- 75 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKEE----LG-----E-GLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKT- 75 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hc-----C-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3445554455555556655555555421 10 0 00124577888888888888888888888887766544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003944 507 AEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKG 566 (784)
Q Consensus 507 ~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ 566 (784)
+..+.+++..+..+..+...+..+|......+..+..++..+......+......++.
T Consensus 76 --v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 76 --VQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777777777777777777777777666666655554444444444443
No 262
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.73 E-value=17 Score=40.07 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 439 RAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVEL 495 (784)
Q Consensus 439 r~eL~~lEreLk~l~~~~e~l~~~n~~eI~~l~eqieeLkeeLe~l~~eLe~~n~El 495 (784)
+..|.++|.+.+.+|-....| .++-..+--+|+-|+..|+.++..+.....++
T Consensus 83 k~~l~evEekyrkAMv~naQL----DNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQL----DNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666677666322111 12223333345555554444444444433333
No 263
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.50 E-value=78 Score=38.00 Aligned_cols=21 Identities=29% Similarity=0.181 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003944 482 ANCMRTIEAKNVELLNLQTAL 502 (784)
Q Consensus 482 e~l~~eLe~~n~El~nLq~eL 502 (784)
..+.+++..++.+...|++.+
T Consensus 241 a~L~Eq~~eK~~e~~rl~~~l 261 (861)
T KOG1899|consen 241 APLREQRSEKNDEEMRLLRTL 261 (861)
T ss_pred hhHHHHHhhhhhHHHHHHHHH
Confidence 333334444454444444443
No 264
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.14 E-value=82 Score=36.59 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003944 570 KLEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 570 kL~~eie~L~kaLdkAl~rl~ 590 (784)
.+..++...+..|+.+-..+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555555444
No 265
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.01 E-value=23 Score=40.73 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 313 ENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 313 eeLq~eieeL~kei~eLe~ei~eLe~eLe~~ 343 (784)
..+....+.....+..+..+|.+|++++..+
T Consensus 417 ~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 417 GKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444445555555666666666666554
No 266
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.93 E-value=15 Score=38.39 Aligned_cols=8 Identities=25% Similarity=0.439 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 003944 473 IIDGLNNK 480 (784)
Q Consensus 473 qieeLkee 480 (784)
++.+++.+
T Consensus 101 el~~l~~~ 108 (206)
T PRK10884 101 QVKTLTDK 108 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 267
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.66 E-value=1.1 Score=56.22 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=62.2
Q ss_pred hHhhhhhhccCCCCCcchh--hHHHHhhh----c------ccccccccccCCCcccCCCCCCCC-----C----------
Q 003944 104 KEEQISRLNGEYGLLKQNL--DATNAALN----A------FRNGNSKASSNGINIPKGSGDLSP-----S---------- 156 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni--d~~~f~L~----~------~~~~~~ra~~~~dli~~~~~~~~p-----~---------- 156 (784)
..-++.-++|+||||||-+ |.+..++. . .......++.+.+.|+= +++| +
T Consensus 631 p~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v---dQ~pi~~~~RS~~aTy~~~~ 707 (924)
T TIGR00630 631 PLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHI---DQSPIGRTPRSNPATYTGVF 707 (924)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCceEEE---ecCCCCCCCCCchhhhhhhH
Confidence 3566788999999999999 55443331 1 01122233555555554 4444 2
Q ss_pred ---ccccccc---ccCCCCccceecc---C-Cccchhhchhh-hccCCc----------------ccccccccc-chhHH
Q 003944 157 ---RQHKLTA---QVKNRHAGHQLQN---G-FSKQDGVSNGS-HALQTE----------------VVQSSKMQG-KEKEL 208 (784)
Q Consensus 157 ---r~~k~~~---~~~~~~s~~~~~N---g-~~~~~~~~~l~-~~~i~p----------------~gyn~vmqg-d~t~~ 208 (784)
|.....+ ...||..++|-+| | |..=.+.+... .++.-| +...|...| ++.++
T Consensus 708 d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dv 787 (924)
T TIGR00630 708 DEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKNIADV 787 (924)
T ss_pred HHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhceeCCCCHHHH
Confidence 4332111 1335655567777 4 76656555433 222223 333355555 47777
Q ss_pred hhhcHHHhHHHHH
Q 003944 209 ADLLEEKNRSLAA 221 (784)
Q Consensus 209 ~~m~e~err~i~a 221 (784)
.+||-.+--.+.+
T Consensus 788 l~~tv~e~~~f~~ 800 (924)
T TIGR00630 788 LDMTVEEAYEFFE 800 (924)
T ss_pred hCCcHHHHHHHHH
Confidence 8888777665553
No 268
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.54 E-value=83 Score=36.17 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=11.3
Q ss_pred ccccCCCCCCCCCCCCCCC
Q 003944 50 FANSKSVSWSPVSNGFESP 68 (784)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~ 68 (784)
|+-..|.|-||..-..|+|
T Consensus 35 la~T~s~pssp~gss~dsp 53 (502)
T KOG0982|consen 35 LAETRSRPSSPGGSSSDSP 53 (502)
T ss_pred hhhccCCCCCCCCCCCCCc
Confidence 3445556666766666666
No 269
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.53 E-value=35 Score=31.92 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 003944 571 LEEDNAKL 578 (784)
Q Consensus 571 L~~eie~L 578 (784)
...+...+
T Consensus 91 ~~~dka~l 98 (107)
T PF09304_consen 91 AQKDKAIL 98 (107)
T ss_dssp HHHHHHHH
T ss_pred HHhhhhHH
Confidence 33333333
No 270
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=84.40 E-value=47 Score=36.08 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 473 IIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAE-IEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEIL 551 (784)
Q Consensus 473 qieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~e-iEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ 551 (784)
.|.-|+.+|.+....+...+.|+.+|...|.+++.. |++ |=.+.+ .+-.|++++.+|..+++=++...
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEE------ECHRVE-----AQLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEE------ECHRVE-----AQLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666777777777777666332 111 111111 12235666666666666554444
Q ss_pred HHhh
Q 003944 552 VKLS 555 (784)
Q Consensus 552 ekL~ 555 (784)
..|.
T Consensus 138 ssL~ 141 (305)
T PF15290_consen 138 SSLA 141 (305)
T ss_pred hhhc
Confidence 4443
No 271
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.28 E-value=67 Score=34.87 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 382 Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
+..-+.++.+++.....+..+|+.|...+.+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~ 64 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEI 64 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555544444
No 272
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.14 E-value=19 Score=31.31 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 565 KGRANKLEEDNAKLRLAVEQSMTRL 589 (784)
Q Consensus 565 K~ei~kL~~eie~L~kaLdkAl~rl 589 (784)
+.+..+++++-.....+|+.-+.++
T Consensus 45 ~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 45 KEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344455555555555555544
No 273
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=84.00 E-value=97 Score=36.53 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=26.8
Q ss_pred cccccchhHHhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 199 SKMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQR 241 (784)
Q Consensus 199 ~vmqgd~t~~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ 241 (784)
--||+++|.| +++=.++|.+-.+.+...+.+-+.-|++.-
T Consensus 170 arm~aqi~~l---~eEmS~r~l~reakl~~~lqk~f~alEk~m 209 (531)
T PF15450_consen 170 ARMQAQITKL---GEEMSLRFLKREAKLCSFLQKSFLALEKRM 209 (531)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888665 455567777777777777766666555544
No 274
>PF13175 AAA_15: AAA ATPase domain
Probab=83.98 E-value=0.41 Score=53.58 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=17.3
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
.+.=+.|.|||||||| +|+
T Consensus 23 ~itiiiG~N~sGKT~IL~aL 42 (415)
T PF13175_consen 23 DITIIIGENNSGKTNILEAL 42 (415)
T ss_pred ceEEEEccCCCCHHHHHHHH
Confidence 5677999999999999 998
No 275
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=83.96 E-value=87 Score=35.98 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 379 EQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 379 E~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
...+..+-++++.++ .+++.|..++..+...
T Consensus 241 kehv~km~kdle~Lq----~aEqsl~dlQk~Leka 271 (575)
T KOG4403|consen 241 KEHVNKMMKDLEGLQ----RAEQSLEDLQKRLEKA 271 (575)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 334444444454443 5666666666665544
No 276
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=83.95 E-value=62 Score=34.28 Aligned_cols=131 Identities=24% Similarity=0.262 Sum_probs=70.8
Q ss_pred cccchhHHhhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHH
Q 003944 201 MQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEIT 280 (784)
Q Consensus 201 mqgd~t~~~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~ 280 (784)
+-|.+...++--++-.+.|--.+-.++.++.+++..+.++...-..+..++++...+...++..-...-..-+ ..=..
T Consensus 11 ~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr 88 (225)
T COG1842 11 VKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLAR 88 (225)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHH
Confidence 3345566666666666555577778888888888888888877777777777777777777666322222111 00011
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 281 EMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVA 338 (784)
Q Consensus 281 ~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~ 338 (784)
....+...++..+..++.++... ..+++.|+..+..|...+.+++.....+..
T Consensus 89 ~al~~~~~le~~~~~~~~~~~~~-----~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~a 141 (225)
T COG1842 89 EALEEKQSLEDLAKALEAELQQA-----EEQVEKLKKQLAALEQKIAELRAKKEALKA 141 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233333444444444444321 124455555555555544444444444433
No 277
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=83.45 E-value=0.5 Score=48.32 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=17.4
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
.+.-|+||||||||-+ ..|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 5677999999999999 8765
No 278
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.42 E-value=34 Score=35.97 Aligned_cols=20 Identities=20% Similarity=0.066 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003944 557 SEKMLAEGKGRANKLEEDNA 576 (784)
Q Consensus 557 lE~~l~dlK~ei~kL~~eie 576 (784)
+...+.+++.+|..|...++
T Consensus 189 l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 189 LPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred chhHHHHHHHHHHHhccccc
Confidence 33344455555554444433
No 279
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=83.37 E-value=0.48 Score=53.49 Aligned_cols=39 Identities=21% Similarity=0.057 Sum_probs=29.0
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcc
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINI 146 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli 146 (784)
+.+.-|.||||+|||++ ||+-.+||.. ...|.=.-.|+=
T Consensus 22 ~~~t~liG~N~~GKss~l~Al~~~l~~~--~~~~~f~~~DFh 61 (373)
T PF11398_consen 22 DDNTVLIGENNWGKSSLLDALSLLLSPS--RRLYQFTESDFH 61 (373)
T ss_pred cCceEEEcCCCccHhHHHHHHHHHhCCC--ccccccCHHHhC
Confidence 45678999999999999 9999998865 344443444543
No 280
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=83.06 E-value=0.53 Score=48.13 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=17.5
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
.+.-|+||||||||-+ .+|.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 5667999999999999 8876
No 281
>PF13166 AAA_13: AAA domain
Probab=82.95 E-value=1.2e+02 Score=36.96 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 473 IIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 473 qieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
.+..+...+..+...+...+..+.++...+..+
T Consensus 364 ~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~ 396 (712)
T PF13166_consen 364 DIDELNSIIDELNELIEEHNEKIDNLKKEQNEL 396 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455454445544444443
No 282
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.80 E-value=19 Score=34.74 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=35.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHhhHhHHHHHHhh
Q 003944 214 EKNRSLAAERAAYESQTRQLRMELEQQRN----KFADVQLKLQEEQRLNESFQDELKSL 268 (784)
Q Consensus 214 ~err~i~a~~a~~e~ei~~l~~ELe~~~e----kle~l~~~LeE~~~~le~Lkeel~~l 268 (784)
--||.+..+.+.+-..++++-+.|...+. +|+++..++++........++++..+
T Consensus 36 vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v 94 (126)
T PF07889_consen 36 VTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEV 94 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34788888889888888888888888775 55555555555444444444433333
No 283
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=82.12 E-value=78 Score=34.05 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 514 HLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLA 581 (784)
Q Consensus 514 rle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~ka 581 (784)
.+..+++..+...+.|.....++..=+..+..+++.-.+-+--++..+++.+.+|..+...+..+..+
T Consensus 240 ~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqa 307 (330)
T KOG2991|consen 240 ELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQA 307 (330)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333333333333332223333444444444444444444443333
No 284
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=82.10 E-value=48 Score=33.57 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003944 389 LKETCSERDKALQELTRLKQHLI 411 (784)
Q Consensus 389 Leele~e~~ka~~EL~rLr~eL~ 411 (784)
...+..+..++..+++.+++++.
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 285
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=82.06 E-value=0.63 Score=46.33 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=19.0
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
+.=++||+|||||.+ .++...|+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 345799999999999 987666653
No 286
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=82.02 E-value=59 Score=32.64 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
+...+|-.+.-+..+-..|+...++|+..+..+..
T Consensus 85 ~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~ 119 (159)
T PF05384_consen 85 EAHELQVRLAMLREREKQLRERRDELERRLRNLEE 119 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 287
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.92 E-value=1.5e+02 Score=37.09 Aligned_cols=40 Identities=28% Similarity=0.256 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003944 521 LAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKM 560 (784)
Q Consensus 521 ~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~ 560 (784)
.+.++...|.+.|.....++.....-......+|++++.+
T Consensus 269 ~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~q 308 (769)
T PF05911_consen 269 AMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQ 308 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333444444443
No 288
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.85 E-value=42 Score=34.51 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003944 528 KLSEYLKNADQRAEVSRSEKE 548 (784)
Q Consensus 528 ~L~~eLkeak~eie~l~~Ele 548 (784)
.+..++.+++.++..++.++.
T Consensus 107 ~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 107 ELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 289
>COG3910 Predicted ATPase [General function prediction only]
Probab=81.75 E-value=0.81 Score=47.06 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=24.0
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSK 138 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~r 138 (784)
-|.=++|+||||||-| +||-...|.--+.+-|
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~ 70 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGK 70 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCc
Confidence 4667899999999999 9987766654444443
No 290
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.59 E-value=0.59 Score=45.59 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=18.4
Q ss_pred HhhhhhhccCCCCCcchh-hHHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f 127 (784)
..++.-+.||||||||.+ ++|.-
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346677999999999998 88643
No 291
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=81.38 E-value=64 Score=32.62 Aligned_cols=9 Identities=33% Similarity=0.464 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 003944 473 IIDGLNNKL 481 (784)
Q Consensus 473 qieeLkeeL 481 (784)
.+.+|+.++
T Consensus 59 ~~~eLr~el 67 (177)
T PF07798_consen 59 AIAELRSEL 67 (177)
T ss_pred HHHHHHHHH
Confidence 334444443
No 292
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=81.27 E-value=32 Score=42.95 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=16.2
Q ss_pred ceeccC-CccchhhchhhhccCCcc
Q 003944 172 HQLQNG-FSKQDGVSNGSHALQTEV 195 (784)
Q Consensus 172 ~~~~Ng-~~~~~~~~~l~~~~i~p~ 195 (784)
|....| +..|........+|+.++
T Consensus 478 Ykl~~G~~g~S~a~~iA~~~Glp~~ 502 (782)
T PRK00409 478 YRLLIGIPGKSNAFEIAKRLGLPEN 502 (782)
T ss_pred EEEeeCCCCCcHHHHHHHHhCcCHH
Confidence 566667 677777777777777544
No 293
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.23 E-value=14 Score=38.59 Aligned_cols=12 Identities=8% Similarity=0.265 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 003944 602 RRIVIKLLVTYF 613 (784)
Q Consensus 602 k~lv~nL~~~y~ 613 (784)
--+|+.||.-+|
T Consensus 212 ~~~i~dl~~et~ 223 (290)
T COG4026 212 EELISDLVKETL 223 (290)
T ss_pred HHHHHHHHHHHh
Confidence 445555555333
No 294
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.13 E-value=69 Score=37.01 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=12.8
Q ss_pred CCCCCc---ccccccccCCCCccceeccC
Q 003944 152 DLSPSR---QHKLTAQVKNRHAGHQLQNG 177 (784)
Q Consensus 152 ~~~p~r---~~k~~~~~~~~~s~~~~~Ng 177 (784)
+..||| -||+..|.+-- +-|.-|||
T Consensus 110 d~~pnrymvLIkFr~q~da~-~Fy~efNG 137 (493)
T KOG0804|consen 110 DGMPNRYMVLIKFRDQADAD-TFYEEFNG 137 (493)
T ss_pred cCCCceEEEEEEeccchhHH-HHHHHcCC
Confidence 555664 35555444422 11566888
No 295
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.13 E-value=0.51 Score=47.19 Aligned_cols=40 Identities=23% Similarity=0.094 Sum_probs=25.0
Q ss_pred ccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCCC
Q 003944 112 NGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSPS 156 (784)
Q Consensus 112 ~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p~ 156 (784)
-||||||||-+ -+++..|-.. - -==++|+|-.+-+...|+
T Consensus 8 aG~NGsGKstv~~~~~~~~~~~-~----~~VN~D~iA~~i~p~~p~ 48 (187)
T COG4185 8 AGPNGSGKSTVYASTLAPLLPG-I----VFVNADEIAAQISPDNPT 48 (187)
T ss_pred ecCCCCCceeeeeccchhhcCC-e----EEECHHHHhhhcCCCCch
Confidence 49999999999 7666644320 0 112567777655555554
No 296
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=80.85 E-value=1.5e+02 Score=36.36 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=54.7
Q ss_pred HHHHhHHHHHHHHHHHHhhhhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcc
Q 003944 284 KELNGKLSELRRLQMELNRRED--GDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSR 361 (784)
Q Consensus 284 ~EL~ele~EL~~LqeeL~~~e~--e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~k 361 (784)
.++..+.+....|+..|...+. .+...++...+.+.+.|.+++.....++..-...++.+++-+...+-.. ..+.
T Consensus 162 ~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~---~~~~ 238 (739)
T PF07111_consen 162 EALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPE---VHSQ 238 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcc---cccH
Confidence 4444455555555555532211 1122355555566666666666666566555555666665543111111 0000
Q ss_pred cccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 362 LDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 362 I~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL 410 (784)
.- +. .+.++-..++.|+.+-..+.....-+...+..|..-+
T Consensus 239 ~w-e~-------Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL 279 (739)
T PF07111_consen 239 AW-EP-------EREELLETVQHLQEDRDALQATAELLQVRVQSLTDIL 279 (739)
T ss_pred HH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11 2335556666666665555554444455555544433
No 297
>PF15294 Leu_zip: Leucine zipper
Probab=80.78 E-value=61 Score=35.41 Aligned_cols=146 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhchHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 003944 424 DSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTI--EAKNVELLNLQTA 501 (784)
Q Consensus 424 ~sk~I~EL~~~~e~lr~eL~~lEreLk~l~~~~e~l~~~n~~eI~~l~eqieeLkeeLe~l~~eL--e~~n~El~nLq~e 501 (784)
++++|..|+.+++.++..+..++..+.... .+-..+..++.+++.........- --...++..|+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l-----------~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k 198 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSAL-----------DEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENK 198 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHH
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 502 LGQYFAEIEAK-GHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRL 580 (784)
Q Consensus 502 Leqlq~eiEa~-erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~k 580 (784)
+..+..+++.. .........+...+..-..++-..+.++.....+++. +..+ ...|..++.-+.+-.+.+..|++
T Consensus 199 ~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLek---Kfqq-T~ay~NMk~~ltkKn~QiKeLRk 274 (278)
T PF15294_consen 199 MAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEK---KFQQ-TAAYRNMKEILTKKNEQIKELRK 274 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHH---HhCc-cHHHHHhHHHHHhccHHHHHHHH
Q ss_pred HHHH
Q 003944 581 AVEQ 584 (784)
Q Consensus 581 aLdk 584 (784)
.|.+
T Consensus 275 rl~k 278 (278)
T PF15294_consen 275 RLAK 278 (278)
T ss_pred HhcC
No 298
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.76 E-value=86 Score=33.66 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 003944 570 KLEEDNAKLRLAV 582 (784)
Q Consensus 570 kL~~eie~L~kaL 582 (784)
.|+++.-.|+..|
T Consensus 168 RLkdEardlrqel 180 (333)
T KOG1853|consen 168 RLKDEARDLRQEL 180 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555444
No 299
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=80.39 E-value=52 Score=38.75 Aligned_cols=69 Identities=19% Similarity=0.304 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 476 GLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK-GHLERELALAREESAKLSEYLKNADQRAEVSR 544 (784)
Q Consensus 476 eLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~-erle~El~~LreEie~L~~eLkeak~eie~l~ 544 (784)
.|..+|...+.+......++......+..++.+++.. .-|+..+..+-+.+..+..+|.....+|+.++
T Consensus 445 aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 445 ALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344333344444444444444444444444444 34677777777777777777777777776654
No 300
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=80.39 E-value=72 Score=32.59 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 382 LQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 382 Ie~Le~ELeele~e~~ka~~EL~rLr~eL 410 (784)
+..|+..|..++-++..++.-+..|-.+.
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et 34 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRET 34 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44555666666666666666666555544
No 301
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=80.20 E-value=3.4 Score=44.57 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=19.1
Q ss_pred hhhhhhccCCCCCcchh--hHHHHhhh
Q 003944 106 EQISRLNGEYGLLKQNL--DATNAALN 130 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni--d~~~f~L~ 130 (784)
..+.-++|+.|||||-+ |.+..++.
T Consensus 21 g~~~~vtGvSGsGKStL~~~~l~~~~~ 47 (261)
T cd03271 21 GVLTCVTGVSGSGKSSLINDTLYPALA 47 (261)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHH
Confidence 35667899999999999 76655543
No 302
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.16 E-value=30 Score=30.66 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=21.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 465 SEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 465 ~eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
..|..++.+|++|+.+-..+..+..........|..+-+++
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qL 58 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566666777776665555555444444444444444333
No 303
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=79.86 E-value=1.2e+02 Score=34.83 Aligned_cols=44 Identities=11% Similarity=-0.003 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 536 ADQRAEVSRSEKEEILVKLS-HSEKMLAEGKGRANKLEEDNAKLR 579 (784)
Q Consensus 536 ak~eie~l~~Eleel~ekL~-~lE~~l~dlK~ei~kL~~eie~L~ 579 (784)
-+.+|..++.++...++|+. +......|+.+-+...+..+.++.
T Consensus 274 Hq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 274 HQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44566666666666666654 444455666666666777777776
No 304
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=79.69 E-value=0.55 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=17.3
Q ss_pred hhhhhhccCCCCCcchh-hHHHH
Q 003944 106 EQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f 127 (784)
-++.-+.||||||||-+ .++.-
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEEccCCCccccceeeecc
Confidence 35667899999999999 76544
No 305
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=79.56 E-value=0.79 Score=49.14 Aligned_cols=39 Identities=31% Similarity=0.496 Sum_probs=26.7
Q ss_pred hHhHhhhhHHH--Hhhh-----hHhhhhhhccCCCCCcchh-hHHHH
Q 003944 89 EIKALSVNYAA--LLKE-----KEEQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 89 ~~~~~~~~~~~--~~~~-----~~~~~~~~~g~NGSgKsni-d~~~f 127 (784)
+++.|+|.|.. .|.. ..-.|.-|.||||+|||-+ =+|+=
T Consensus 6 ~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 6 EVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35667777773 3332 2235677999999999998 66654
No 306
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=79.33 E-value=1.4 Score=52.36 Aligned_cols=101 Identities=14% Similarity=-0.005 Sum_probs=53.7
Q ss_pred hHhhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCC--CCCCC---cccccccccCCCCccceeccC
Q 003944 104 KEEQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSG--DLSPS---RQHKLTAQVKNRHAGHQLQNG 177 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~--~~~p~---r~~k~~~~~~~~~s~~~~~Ng 177 (784)
+.-++.-++||||||||-+ +.+.=-+-. .-+...++|.. +-++. +.+--..|+...+++....|+
T Consensus 366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~p---------~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~ 436 (555)
T TIGR01194 366 AQGDIVFIVGENGCGKSTLAKLFCGLYIP---------QEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE 436 (555)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC---------CCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc
Confidence 4567888999999999999 765421111 11222222211 11110 111111121111111111122
Q ss_pred ---CccchhhchhhhccCC------ccccccccccchhHHhhhcHHHhHHHHH
Q 003944 178 ---FSKQDGVSNGSHALQT------EVVQSSKMQGKEKELADLLEEKNRSLAA 221 (784)
Q Consensus 178 ---~~~~~~~~~l~~~~i~------p~gyn~vmqgd~t~~~~m~e~err~i~a 221 (784)
.+..++.+.+..+++. |+||+.+ ..+|.++|+.|.=
T Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~--------~~LSgGq~qRlal 481 (555)
T TIGR01194 437 GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT--------TALSTGQQKRLAL 481 (555)
T ss_pred ccchhHHHHHHHHHHcCCchhhcccccccCCc--------ccCCHHHHHHHHH
Confidence 4566777888888875 6787542 7899999998883
No 307
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=79.29 E-value=85 Score=32.74 Aligned_cols=94 Identities=22% Similarity=0.292 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 003944 381 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFK 460 (784)
Q Consensus 381 ~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~~~e~lr~eL~~lEreLk~l~~~~e~l~ 460 (784)
.|.-|+..|.+++.++..--.||-.|+..+.+..... +.....+..+......-..++..|+.++....
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l----~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~------- 79 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAEL----RNKESQIQELQDSLRTKQLELEVCENELQRKK------- 79 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh-------
Confidence 3666788888888888888888888888776653321 22222344443332223345566666655542
Q ss_pred hhchHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003944 461 MMNHSEIQKSKEIIDGLNNKLANCMRTIE 489 (784)
Q Consensus 461 ~~n~~eI~~l~eqieeLkeeLe~l~~eLe 489 (784)
.+...++.++..+..++..+...+.
T Consensus 80 ----~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 80 ----NEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred ----CHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 2333444444444444444444333
No 308
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.98 E-value=41 Score=35.36 Aligned_cols=62 Identities=23% Similarity=0.242 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 522 AREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVE 583 (784)
Q Consensus 522 LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLd 583 (784)
+.++.+.+.+++..++.+++....+++...++...+.++..++..++..|-+|...|++.++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555555666666666666677777777776664
No 309
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=78.82 E-value=1.7e+02 Score=36.08 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHhh--------hHHhHhHhhhhHHHHhhhhH
Q 003944 72 EIERYKAEIKRLQE--------SEAEIKALSVNYAALLKEKE 105 (784)
Q Consensus 72 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 105 (784)
+|..+...|..|.. ...||..|...+..+.++.-
T Consensus 102 pi~ele~ki~el~~~~~~~~~~~~~ei~~Le~k~~~~~~~iy 143 (762)
T PLN03229 102 PLVDLEKKIVDVRKMANETGLDFSDQIISLESKYQQALKDLY 143 (762)
T ss_pred HHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777764 24568888888777766543
No 310
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.48 E-value=13 Score=37.25 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=21.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 465 SEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTAL 502 (784)
Q Consensus 465 ~eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eL 502 (784)
.++..++.++..|+.++..+..++.....++..|...+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555566666666666666655555555555554443
No 311
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.39 E-value=87 Score=32.33 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 563 EGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 563 dlK~ei~kL~~eie~L~kaLdkAl~rl~~ 591 (784)
....++.+++.++..++..+.++-.++++
T Consensus 156 ~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 156 AKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777788888887777766654
No 312
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.26 E-value=1.2e+02 Score=33.94 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL 410 (784)
+....++.++.+|...+........+.+.+-..+
T Consensus 12 et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 12 ETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666665555544
No 313
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=78.15 E-value=0.91 Score=45.91 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=16.0
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
.+.-|.||||||||-+ -++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 4567899999999998 765
No 314
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=77.97 E-value=74 Score=34.63 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 381 SLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 381 ~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
.|--|+..|.+.+..+..-..||.+|+.+|--+
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RM 101 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARM 101 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344455555555554444455555555554443
No 315
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.82 E-value=62 Score=30.35 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 474 IDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 474 ieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
-+.|+..+..+..+..+....+..|+..++.+
T Consensus 39 kd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 39 KDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 316
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=77.80 E-value=0.95 Score=46.54 Aligned_cols=19 Identities=11% Similarity=-0.059 Sum_probs=16.3
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
.+.=|+||||||||-+ -+|
T Consensus 26 ~~~~ltGpNg~GKSTllr~i 45 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTI 45 (199)
T ss_pred cEEEEECCCCCChHHHHHHH
Confidence 6777999999999998 655
No 317
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=77.07 E-value=74 Score=32.26 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhc-CChh-HHHHH
Q 003944 602 RRIVIKLLVTYFQR-NHSK-EVLDL 624 (784)
Q Consensus 602 k~lv~nL~~~y~~~-~~~~-evL~L 624 (784)
+|+.+.+|-.+..+ |+++ +.+.-
T Consensus 172 krmf~ei~d~~~e~~pk~ksel~ee 196 (201)
T KOG4603|consen 172 KRMFREIIDKLLEGLPKKKSELYEE 196 (201)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHH
Confidence 77888888888876 4443 54443
No 318
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=76.85 E-value=1 Score=46.00 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.3
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l 46 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCI 46 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 664
No 319
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.79 E-value=1 Score=46.04 Aligned_cols=19 Identities=26% Similarity=0.200 Sum_probs=16.3
Q ss_pred hhhhccCCCCCcchh-hHHH
Q 003944 108 ISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~ 126 (784)
+.-|.||||||||-+ ..+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred cEEEECCCCCCHHHHHHHHh
Confidence 788999999999998 6653
No 320
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=76.73 E-value=1.1 Score=45.68 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.2
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l 44 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNII 44 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 356778999999999998 654
No 321
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=76.71 E-value=0.9 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=19.1
Q ss_pred HhhhhhhccCCCCCcchh-hHHHHhh
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
.-.|.-+.||||||||-+ -++.-.|
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 356778999999999998 6655433
No 322
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=76.64 E-value=1.4e+02 Score=36.79 Aligned_cols=12 Identities=42% Similarity=0.487 Sum_probs=9.5
Q ss_pred ccccccchhhhh
Q 003944 725 LQSLGFQDRIYL 736 (784)
Q Consensus 725 ~~~~~~~~~~~~ 736 (784)
+.++-|++|..+
T Consensus 628 l~sL~FA~rv~~ 639 (670)
T KOG0239|consen 628 LCSLRFATRVRS 639 (670)
T ss_pred hhccchHHHhhc
Confidence 378889998876
No 323
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=76.26 E-value=0.95 Score=46.84 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=17.2
Q ss_pred hhhhhhccCCCCCcchh-hHHH
Q 003944 106 EQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.++.-|.||||||||-+ ..|.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~ 34 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLC 34 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 46777999999999998 6644
No 324
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=76.16 E-value=0.69 Score=49.12 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=28.0
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCC
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGS 150 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~ 150 (784)
..-|.|+||||||-+ =-|.=++-+.+-+..+-.+++=+|--|.
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~ 98 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGA 98 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhccc
Confidence 345899999999998 5555555566666666666654443333
No 325
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=76.06 E-value=1.2e+02 Score=34.07 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 533 LKNADQRAEVSRSEKEEILVKLSH-SEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 593 (784)
Q Consensus 533 Lkeak~eie~l~~Eleel~ekL~~-lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~~~~ 593 (784)
+..++.++..+...+.....++.. ....+.....++..|..+.+.-+..++.++.++....
T Consensus 244 v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544444433221 1112333334555677888888888888888887643
No 326
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=75.44 E-value=1e+02 Score=31.75 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 003944 565 KGRANKLEEDNAKL 578 (784)
Q Consensus 565 K~ei~kL~~eie~L 578 (784)
+.....+..++...
T Consensus 165 ks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 165 KSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 327
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=75.35 E-value=41 Score=28.44 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 507 AEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEIL 551 (784)
Q Consensus 507 ~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ 551 (784)
++|.+...++.++...+...-.+...|.++..+...+..++..+.
T Consensus 8 ~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 8 AEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556655555555555555555555555554444333
No 328
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=75.34 E-value=1.7e+02 Score=34.04 Aligned_cols=80 Identities=23% Similarity=0.258 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHH
Q 003944 315 LKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCS 394 (784)
Q Consensus 315 Lq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~ 394 (784)
.+.....+..++..++..+...+......+.... + ... .+ ...........+...+.....
T Consensus 193 ~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~--l----~~~--------~~-----~~~~~~~~~~~ln~ql~~~~~ 253 (458)
T COG3206 193 FRRASDSLDERLEELRARLQEAEAQVEDFRAQHG--L----TDA--------AR-----GQLLSEQQLSALNTQLQSARA 253 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C----ccc--------cc-----chhHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555556655555555554443 1 110 00 011223344455666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003944 395 ERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 395 e~~ka~~EL~rLr~eL~e~ 413 (784)
....+...+..++......
T Consensus 254 ~~~~~~a~l~~~~~~~~~~ 272 (458)
T COG3206 254 RLAQAEARLASLLQLLPLG 272 (458)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 6666666666665554443
No 329
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.25 E-value=1.3e+02 Score=37.10 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003944 221 AERAAYESQTRQLRMELEQQRNKFADVQLKLQE 253 (784)
Q Consensus 221 a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE 253 (784)
+...++..++..+..+|..+++.++++...+..
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~ 207 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKS 207 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 667778888888888888888888777776665
No 330
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=75.22 E-value=1 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=18.6
Q ss_pred hHhhhhhhccCCCCCcchh-hHHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
..-++.-|.||||||||-+ ..|.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567888999999999998 6643
No 331
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=75.19 E-value=1e+02 Score=38.08 Aligned_cols=33 Identities=36% Similarity=0.422 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~e 409 (784)
.....++.+++++..++.+...++..+...+.+
T Consensus 264 ~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 264 QDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555444443
No 332
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.03 E-value=88 Score=33.33 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 523 REESAKLSEYLKNADQRAEVSRSE 546 (784)
Q Consensus 523 reEie~L~~eLkeak~eie~l~~E 546 (784)
..+++.+....+.+...+...+.+
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~e 85 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQE 85 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 333
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.84 E-value=1.3 Score=44.34 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=18.2
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
..++.-|.||||||||-+ .++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456777999999999999 7754
No 334
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=74.77 E-value=1.8 Score=42.00 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=36.5
Q ss_pred hHHhHhHhhhhHHHHhhhhHhhhhhhccCCCCCcchh-hHHHHhhhc
Q 003944 86 SEAEIKALSVNYAALLKEKEEQISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
|+.+.++|--..|+.|+. ..+.-|.|+.|+|||-+ -++.-+||.
T Consensus 4 s~~~t~~l~~~l~~~l~~--~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 4 DEKAMDKFGKAFAKPLDF--GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CHHHHHHHHHHHHHhCCC--CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 677888888888888844 55888999999999999 888888875
No 335
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.63 E-value=1.3 Score=45.42 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=17.1
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l 46 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLI 46 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 554
No 336
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=74.61 E-value=1.3 Score=45.70 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=16.9
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l 46 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTI 46 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 346777999999999988 654
No 337
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=74.28 E-value=1.3 Score=45.46 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=17.9
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh
Confidence 456778999999999988 6653
No 338
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=74.23 E-value=2.6e+02 Score=35.84 Aligned_cols=326 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------------HhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHH
Q 003944 221 AERAAYESQTRQLRMELEQQR-----------------------NKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSI 277 (784)
Q Consensus 221 a~~a~~e~ei~~l~~ELe~~~-----------------------ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~ 277 (784)
+-.-.+-.+|++|+.+|..++ +.|+++..+++..++++..+++.+-++.........
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC
Q 003944 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASE 357 (784)
Q Consensus 278 Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E 357 (784)
+...+...|.....++..+++++..... ++..-...+....+--..+...-..|+..++.+..+.+
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~-----~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s--------- 549 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAKA-----TLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLS--------- 549 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred CCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 003944 358 YPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEY 437 (784)
Q Consensus 358 ~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~~~e~ 437 (784)
.+-..+......-..-+.-......++.+.-..+...-. ...+..+.-+......
T Consensus 550 -------------------~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~------~~~s~~~~~l~~~~~~ 604 (1041)
T KOG0243|consen 550 -------------------SLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVA------SSSSQQISQLTTMLAQ 604 (1041)
T ss_pred -------------------HHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHh------hhhhhHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhchHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHH
Q 003944 438 QRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEA-KNVELLNLQTALGQYFAEIEAK-GHL 515 (784)
Q Consensus 438 lr~eL~~lEreLk~l~~~~e~l~~~n~~eI~~l~eqieeLkeeLe~l~~eLe~-~n~El~nLq~eLeqlq~eiEa~-erl 515 (784)
...-+...-..+................-+..++..+..++..+..+-..+.. ...-+..+...++.+-...+.+ ..+
T Consensus 605 ~~s~~s~~~~~~e~~~t~~~~~r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i 684 (1041)
T KOG0243|consen 605 MESFLSAKSKATEIMKTKISKDRDILSEVLESLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNI 684 (1041)
T ss_pred hHHHhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 516 ERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 516 e~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~~ 591 (784)
+..+. ...++-.+-.. +++..+.......+.--...-.-...+...+.++.........++.+.+..+..
T Consensus 685 ~~~l~-~q~~~~~l~~~-----qe~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1041)
T KOG0243|consen 685 SSRLS-NQQEILSLFAN-----QELQELVLSQDSAQELSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQK 754 (1041)
T ss_pred HHHHh-hhhhHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhh
No 339
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=74.20 E-value=1.4 Score=44.85 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=17.4
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~ 47 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILA 47 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999988 6543
No 340
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=74.17 E-value=1.1 Score=46.33 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=18.0
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i 56 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAIL 56 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 567889999999999998 654
No 341
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=74.15 E-value=1.3 Score=46.19 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=17.2
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l 46 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLI 46 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 654
No 342
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=73.98 E-value=1.4 Score=46.10 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=17.2
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l 46 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTI 46 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 664
No 343
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=73.97 E-value=1e+02 Score=31.63 Aligned_cols=137 Identities=16% Similarity=0.232 Sum_probs=79.2
Q ss_pred Cccchhhchhhh-ccCCccccccccccchhHHhhhcHHHhH----HHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 003944 178 FSKQDGVSNGSH-ALQTEVVQSSKMQGKEKELADLLEEKNR----SLA----------AERAAYESQTRQLRMELEQQRN 242 (784)
Q Consensus 178 ~~~~~~~~~l~~-~~i~p~gyn~vmqgd~t~~~~m~e~err----~i~----------a~~a~~e~ei~~l~~ELe~~~e 242 (784)
.++.|+--++.+ .||.|-- |++++...-.+.. +|- .........+..+..+++..+.
T Consensus 12 y~lKELEK~~pK~~gI~~~~--------VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~ 83 (188)
T PF03962_consen 12 YTLKELEKLAPKEKGIVSMS--------VKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEK 83 (188)
T ss_pred ccHHHHHHHcccccCCchhh--------HHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888 8886543 5555544433211 111 4555666667777777777776
Q ss_pred hHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHH
Q 003944 243 KFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATL 322 (784)
Q Consensus 243 kle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL 322 (784)
++..++..++... . .+....+-..+..++.++..++..|+.++...... ....++.++..+..
T Consensus 84 ~i~~l~~~i~~~~--------------~-~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~-Dp~~i~~~~~~~~~- 146 (188)
T PF03962_consen 84 KIEELEEKIEEAK--------------K-GREESEEREELLEELEELKKELKELKKELEKYSEN-DPEKIEKLKEEIKI- 146 (188)
T ss_pred HHHHHHHHHHHHH--------------h-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH-
Confidence 6666666665522 1 12222566677788888888888888888633221 12345554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 003944 323 EKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 323 ~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
++...+.-++.|..+..
T Consensus 147 ------~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 147 ------AKEAANRWTDNIFSLKS 163 (188)
T ss_pred ------HHHHHHHHHhhHHHHHH
Confidence 44455555555554443
No 344
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=73.96 E-value=1.4 Score=45.05 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=17.2
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
..++.-+.||||||||-+ ..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l 46 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKII 46 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 356777999999999998 664
No 345
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=73.93 E-value=1.3 Score=46.06 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=17.5
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
..++.-|.||||||||-+ ..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l 45 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLI 45 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 466778999999999998 654
No 346
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=73.90 E-value=1.3e+02 Score=32.05 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 003944 575 NAKLRLAVEQSM 586 (784)
Q Consensus 575 ie~L~kaLdkAl 586 (784)
+..|.++|.+++
T Consensus 231 ln~yt~~lQ~~L 242 (247)
T PF06705_consen 231 LNHYTKALQDGL 242 (247)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 347
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.80 E-value=1.4 Score=45.99 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=17.6
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999988 6653
No 348
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=73.78 E-value=1.2 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=18.3
Q ss_pred hHhhhhhhccCCCCCcchh-hHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
..-++.-|.||||||||-+ ..|
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i 51 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLL 51 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 3566888999999999998 765
No 349
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=73.73 E-value=1.4 Score=45.09 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=17.5
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 456777999999999998 5543
No 350
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=73.68 E-value=1.2 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=19.1
Q ss_pred HhhhhhhccCCCCCcchh-hHHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f 127 (784)
.-++.-|.||||||||-+ ..|.-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G 49 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILG 49 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 467888999999999999 77553
No 351
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=73.61 E-value=1.4 Score=43.49 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=17.1
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i 46 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKIL 46 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456777999999999998 654
No 352
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.60 E-value=1.2 Score=45.61 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.4
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
..++.-|.||||||||-+ ..+.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~ 45 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIA 45 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 567888999999999998 6654
No 353
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.38 E-value=1.4 Score=45.35 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=17.7
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999988 6643
No 354
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.37 E-value=61 Score=28.08 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=17.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQT 500 (784)
Q Consensus 467 I~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~ 500 (784)
|..+.-+|++|+++-+.+..+..........|.+
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 5556666777766555554444433333333333
No 355
>PLN03188 kinesin-12 family protein; Provisional
Probab=73.19 E-value=3e+02 Score=36.07 Aligned_cols=13 Identities=46% Similarity=0.544 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHh
Q 003944 289 KLSELRRLQMELN 301 (784)
Q Consensus 289 le~EL~~LqeeL~ 301 (784)
..-+|+++++++.
T Consensus 965 ~~~e~~~~~~e~~ 977 (1320)
T PLN03188 965 TKIELKRVQDELE 977 (1320)
T ss_pred hhHHHHHHHHHHH
Confidence 3445566666664
No 356
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=73.18 E-value=1.2 Score=45.76 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=19.0
Q ss_pred hHhhhhhhccCCCCCcchh-hHHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
...++.-|.||||||||-+ ..|.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~ 51 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLA 51 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567888999999999999 7653
No 357
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=73.10 E-value=1.5 Score=44.30 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=17.5
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.=|+||||||||-| ..+...++
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 445899999999999 77655443
No 358
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=73.07 E-value=1.2 Score=45.35 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=17.6
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l 46 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKIL 46 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 467888999999999988 654
No 359
>PRK10908 cell division protein FtsE; Provisional
Probab=72.98 E-value=1.5 Score=45.32 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=18.6
Q ss_pred hHhhhhhhccCCCCCcchh-hHHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
...++.-|.||||||||-+ ..|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567788999999999988 6643
No 360
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=72.86 E-value=1.5 Score=44.04 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=17.5
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~ 47 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALF 47 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999988 6543
No 361
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.84 E-value=1.5 Score=45.59 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=17.3
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
..++.-|.||||||||-+ ..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l 51 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCI 51 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 466788999999999988 554
No 362
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=72.71 E-value=1.3 Score=44.65 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=17.1
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+.++.-|.||||||||-+ ..|
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i 38 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHL 38 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 554
No 363
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.65 E-value=1.6 Score=43.41 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.4
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i 48 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLL 48 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 466788999999999988 554
No 364
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=72.55 E-value=1.5 Score=45.41 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=17.8
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~ 47 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIV 47 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 456777999999999998 6654
No 365
>PLN03188 kinesin-12 family protein; Provisional
Probab=72.47 E-value=3.1e+02 Score=35.94 Aligned_cols=162 Identities=19% Similarity=0.265 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHH-------HHHHHHHHhhh
Q 003944 231 RQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSE-------LRRLQMELNRR 303 (784)
Q Consensus 231 ~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~E-------L~~LqeeL~~~ 303 (784)
+.++.+|+.-+.-.++++..|+..++-.+.|++-+..+-.-.-..++....|+....++... |.++.....+.
T Consensus 1068 eelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaaka 1147 (1320)
T PLN03188 1068 EELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARA 1147 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777777777788877777777777765554443334444444444444443333 33333332211
Q ss_pred hcCC-chHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHH
Q 003944 304 EDGD-ANDVVENLKRVVA----TLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEM 378 (784)
Q Consensus 304 e~e~-~~~tieeLq~eie----eL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeL 378 (784)
-..| .+.-+..|..++. +.+++.+-|+.+...|+.+|...-+..+ .+.|+-.+ ..+.
T Consensus 1148 g~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~-----aagellvr-------------l~ea 1209 (1320)
T PLN03188 1148 GVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQ-----AAGELLVR-------------LKEA 1209 (1320)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH-----HHHHHHHH-------------HHHH
Confidence 1112 1233333333333 3334444455555555555544433322 01111111 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 379 EQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 379 E~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL 410 (784)
|.....+++.-..++.+-.++.++++.|+.+.
T Consensus 1210 eea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1210 EEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666777777777776655
No 366
>PRK11519 tyrosine kinase; Provisional
Probab=72.38 E-value=1.7e+02 Score=36.21 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~e 409 (784)
.....++.+++++.++..+.+.++..+...+.+
T Consensus 264 ~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 264 EASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666655555555555555543
No 367
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=72.30 E-value=1.3 Score=46.24 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.0
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ .+|.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~ 49 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCIN 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 457888999999999988 6643
No 368
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=72.30 E-value=1.5 Score=45.73 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.3
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ .++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l 51 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTL 51 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 654
No 369
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=72.29 E-value=1.3 Score=45.75 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.1
Q ss_pred hHhhhhhhccCCCCCcchh-hHHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
+.-++.-|.||||||||-+ .++.
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~ 61 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLE 61 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567888999999999999 7654
No 370
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=72.19 E-value=86 Score=34.72 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQ 504 (784)
Q Consensus 469 ~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeq 504 (784)
.++..+.++.+++..++-...++..+..+|.=+++-
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~ 116 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDL 116 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 344444444444444444334444444444333333
No 371
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=72.13 E-value=1.6 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=17.5
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||=+ ..|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~ 49 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999987 5543
No 372
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.10 E-value=1.4 Score=45.11 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=17.8
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999988 6644
No 373
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=72.09 E-value=1.3 Score=45.40 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.2
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l 49 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLI 49 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 554
No 374
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=72.00 E-value=1.5 Score=44.35 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.0
Q ss_pred hHhhhhhhccCCCCCcchh-hH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DA 124 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~ 124 (784)
+.-.+.-|.||||||||-+ ..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~ 44 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKI 44 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHH
Confidence 3456788999999999987 54
No 375
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=71.97 E-value=1.4 Score=43.87 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=18.4
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~ 49 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLIL 49 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 466788999999999999 7654
No 376
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=71.89 E-value=1.4 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=18.0
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~ 48 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 457788999999999998 6643
No 377
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=71.87 E-value=1.6 Score=44.52 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=17.3
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-.+.-|.||||||||-+ ..|.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~ 48 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILA 48 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 345777999999999988 6543
No 378
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.82 E-value=1.4 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=18.0
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999998 6653
No 379
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=71.82 E-value=1.4 Score=45.09 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=17.4
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l 47 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLI 47 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 466778999999999988 554
No 380
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=71.72 E-value=1.7 Score=45.43 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=16.5
Q ss_pred hhhhhhccCCCCCcchh-hHH
Q 003944 106 EQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~ 125 (784)
-++.-|.||||||||-+ ..|
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l 31 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLI 31 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 45677999999999988 664
No 381
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=71.69 E-value=61 Score=34.09 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003944 519 LALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNA 576 (784)
Q Consensus 519 l~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie 576 (784)
...+.++...|..+++.....++........+..+.+.+..+|..+.++..+|++.+.
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444445555555555555555555556666656666666554
No 382
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=71.48 E-value=1.7 Score=45.18 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=16.5
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
.+.-|+||||||||-+ -.|.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 5667999999999998 6654
No 383
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=71.46 E-value=1.7 Score=45.19 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=17.3
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l 46 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTL 46 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456788999999999988 653
No 384
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=71.19 E-value=1.5 Score=45.45 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=18.1
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~ 47 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLN 47 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 467788999999999998 7643
No 385
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=71.18 E-value=1.5 Score=43.55 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=18.2
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-+.||||||||-+ ..+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~ 48 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456788999999999999 6654
No 386
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=71.10 E-value=1.8 Score=44.13 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.0
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 556778999999999998 7643
No 387
>COG4637 Predicted ATPase [General function prediction only]
Probab=71.04 E-value=2 Score=47.33 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=14.4
Q ss_pred hccCCCCCcchh-hHHHHh
Q 003944 111 LNGEYGLLKQNL-DATNAA 128 (784)
Q Consensus 111 ~~g~NGSgKsni-d~~~f~ 128 (784)
+.|+||.||||+ |+.-++
T Consensus 27 iIGANGaGKSn~~~~l~~l 45 (373)
T COG4637 27 IIGANGAGKSNFYDALRLL 45 (373)
T ss_pred EEcCCCCchhHHHHHHHHH
Confidence 469999999999 876653
No 388
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=70.98 E-value=1.5 Score=45.56 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.1
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l 53 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIV 53 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 543
No 389
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=70.96 E-value=32 Score=40.61 Aligned_cols=11 Identities=27% Similarity=0.069 Sum_probs=6.0
Q ss_pred cccccchhhhh
Q 003944 726 QSLGFQDRIYL 736 (784)
Q Consensus 726 ~~~~~~~~~~~ 736 (784)
.|.+|=+|++-
T Consensus 431 ~S~~~~~r~~e 441 (907)
T KOG2264|consen 431 ISEMFFQRFLE 441 (907)
T ss_pred hhHHHHHHHHH
Confidence 35555555554
No 390
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.84 E-value=75 Score=31.71 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 383 QKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 383 e~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
..+..++.++..+...+..++..++.++...
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 391
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=70.74 E-value=1.8 Score=43.81 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=14.0
Q ss_pred hccCCCCCcchh-hHHH
Q 003944 111 LNGEYGLLKQNL-DATN 126 (784)
Q Consensus 111 ~~g~NGSgKsni-d~~~ 126 (784)
|+||||||||=+ .+|.
T Consensus 4 ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 4 ITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EECCCCCcHHHHHHHHH
Confidence 799999999988 7665
No 392
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=70.70 E-value=1.8 Score=45.38 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=18.1
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i 67 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKIL 67 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 467888999999999998 765
No 393
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=70.59 E-value=1.8 Score=44.82 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=17.8
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
..++.-|.||||||||-+ ..+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~ 54 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAIS 54 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHh
Confidence 557788999999999988 6543
No 394
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=70.30 E-value=2.8e+02 Score=34.53 Aligned_cols=263 Identities=14% Similarity=0.074 Sum_probs=0.0
Q ss_pred cccccHHHHHHHHHHHHhHHHHHHHHHHHHh-hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 003944 271 DKDKTSIEITEMRKELNGKLSELRRLQMELN-RREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNE 349 (784)
Q Consensus 271 ~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~-~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~ 349 (784)
+.+-+...+..+..-..+.-.+.+.|.-++. +..-++.....+.-...+..+..++..++ .+.....+-+.+..-...
T Consensus 840 dfe~IIed~dc~~eit~ee~eqkElLele~E~egkldglieakeaeenkihK~egEltcaE-~i~q~kdee~altdheke 918 (1424)
T KOG4572|consen 840 DFEIIIEDGDCLKEITKEEGEQKELLELELENEGKLDGLIEAKEAEENKIHKKEGELTCAE-CIKQMKDEEEALTDHEKE 918 (1424)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhHHHHHHhhhcccccchHHHHHHHHhhHHHHhhhhhHHHH-HHHHcchHHHHHHHHHHH
Q ss_pred ccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 003944 350 KIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIE 429 (784)
Q Consensus 350 ~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~ 429 (784)
...-.+.+...+|. +|+..++.-.=+.+++..-..-....+..|-.++... .-.
T Consensus 919 asicl~eeKDqei~-------------EleailekQNca~eeakqn~eis~Ed~kkLhaE~dae-------------Le~ 972 (1424)
T KOG4572|consen 919 ASICLIEEKDQEIE-------------ELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAE-------------LEK 972 (1424)
T ss_pred HHHHHHhhhhHHHH-------------HHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHH-------------HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 430 ELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEI 509 (784)
Q Consensus 430 EL~~~~e~lr~eL~~lEreLk~l~~~~e~l~~~n~~eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~ei 509 (784)
++.+..+-....+..++.++-. ..++........++.+++.+.+++++...++..+...+-+.
T Consensus 973 ~~ael~eleqk~le~~eDea~a-------------Rh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQe---- 1035 (1424)
T KOG4572|consen 973 EFAELIELEQKALECKEDEAFA-------------RHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQE---- 1035 (1424)
T ss_pred HHHHHHHHHHHHHHHhhhHHHH-------------HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhc----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 510 EAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEIL-----VKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 582 (784)
Q Consensus 510 Ea~erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~-----ekL~~lE~~l~dlK~ei~kL~~eie~L~kaL 582 (784)
-+.++...+=...++..--..++.+....+.+.++++ .+..+.+..-.=+..+...|+.++++|+..+
T Consensus 1036 -----kE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~~~edrakqkei~k~L~ehelenLrnEieklndkI 1108 (1424)
T KOG4572|consen 1036 -----KEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDGKCEDRAKQKEIDKILKEHELENLRNEIEKLNDKI 1108 (1424)
T ss_pred -----ccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 395
>PF14992 TMCO5: TMCO5 family
Probab=70.26 E-value=1.7e+02 Score=32.01 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Q 003944 278 EITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 278 Ei~~L~~EL~ele~EL~~LqeeL~ 301 (784)
....+...+.+++..+.+|..+++
T Consensus 19 ~Nq~lL~ki~~~E~~iq~Le~Eit 42 (280)
T PF14992_consen 19 ANQSLLQKIQEKEGAIQSLEREIT 42 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777888888888775
No 396
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.08 E-value=62 Score=27.94 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 003944 497 NLQTALGQ 504 (784)
Q Consensus 497 nLq~eLeq 504 (784)
.|+..++.
T Consensus 9 ~Lr~rLd~ 16 (69)
T PF14197_consen 9 TLRNRLDS 16 (69)
T ss_pred HHHHHHHH
Confidence 33333333
No 397
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=70.03 E-value=1.4 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=18.0
Q ss_pred hhhhhccCCCCCcchhhHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNLDATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsnid~~~f~L~ 130 (784)
++.-++||||||||.+==|++-|.
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHccc
Confidence 456689999999999955566443
No 398
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.02 E-value=1.6 Score=43.46 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=17.2
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-+.||||||||-+ ..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l 46 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKII 46 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 456778999999999998 654
No 399
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.97 E-value=1.6 Score=45.48 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=17.8
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~ 48 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLN 48 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456788999999999988 6543
No 400
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.93 E-value=1.6 Score=45.65 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=17.5
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l 48 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLI 48 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456788999999999988 664
No 401
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=69.92 E-value=2 Score=38.91 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=17.8
Q ss_pred hhccCCCCCcchh-hHHHHhhhcc
Q 003944 110 RLNGEYGLLKQNL-DATNAALNAF 132 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L~~~ 132 (784)
=|.||+|||||-+ -.+...++..
T Consensus 6 ~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 6 LIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred EEECCCCCcHHHHHHHHHhccCCC
Confidence 4789999999999 7776655443
No 402
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=69.80 E-value=1.1e+02 Score=29.72 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=49.0
Q ss_pred HhHHHHHHHHHHHHHhhHhHHHHHHhhhhccc----ccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHH
Q 003944 242 NKFADVQLKLQEEQRLNESFQDELKSLKMDKD----KTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKR 317 (784)
Q Consensus 242 ekle~l~~~LeE~~~~le~Lkeel~~le~~~e----k~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~ 317 (784)
++|..++..+-..=..+..|+.-......... ....++...++.+...+.-++.|+.++..+++ .|..|+.
T Consensus 41 d~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kds-----ei~~Lr~ 115 (131)
T PF04859_consen 41 DKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDS-----EIDRLRE 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 57877887777766777777776555444332 33444555555555556666666666654444 5555555
Q ss_pred HHHHHHHHHHHHH
Q 003944 318 VVATLEKENNSLK 330 (784)
Q Consensus 318 eieeL~kei~eLe 330 (784)
.++.+...+..|+
T Consensus 116 ~L~~~~~~n~~Le 128 (131)
T PF04859_consen 116 KLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555544444
No 403
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.79 E-value=62 Score=28.24 Aligned_cols=7 Identities=29% Similarity=0.169 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 003944 473 IIDGLNN 479 (784)
Q Consensus 473 qieeLke 479 (784)
+|..|..
T Consensus 13 ~Ia~L~e 19 (74)
T PF12329_consen 13 QIAQLME 19 (74)
T ss_pred HHHHHHH
Confidence 3333333
No 404
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=69.74 E-value=1.9 Score=45.61 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=17.3
Q ss_pred hHhhhhhhccCCCCCcchhhHHHH
Q 003944 104 KEEQISRLNGEYGLLKQNLDATNA 127 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsnid~~~f 127 (784)
+.-.+--+-||||||||-+=.++.
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~ 51 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIM 51 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 344566788999999998744443
No 405
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=69.73 E-value=71 Score=28.35 Aligned_cols=27 Identities=26% Similarity=0.371 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 513 GHLERELALAREESAKLSEYLKNADQR 539 (784)
Q Consensus 513 erle~El~~LreEie~L~~eLkeak~e 539 (784)
.-++.++.+++++...|..+...+...
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~ 47 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQ 47 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444333333
No 406
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.66 E-value=2 Score=44.77 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=17.6
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~ 48 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLF 48 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999988 6653
No 407
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=69.64 E-value=2 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=17.8
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~ 47 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMIT 47 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999998 6543
No 408
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.59 E-value=75 Score=27.55 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 509 IEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKE 548 (784)
Q Consensus 509 iEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Ele 548 (784)
++.+.-++.++.+|+++...|+.+...++...+.+.++-+
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ene 56 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENE 56 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 4444445555666666666666666666666665555433
No 409
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=69.50 E-value=1.6 Score=45.39 Aligned_cols=22 Identities=27% Similarity=0.090 Sum_probs=17.5
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~ 33 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAIL 33 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999988 6543
No 410
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=69.49 E-value=2 Score=43.01 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=16.8
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i 45 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTL 45 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456777999999999988 553
No 411
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=69.47 E-value=1.6 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.1
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l 45 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAI 45 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 543
No 412
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=69.39 E-value=2 Score=44.12 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=23.9
Q ss_pred HhHhhhhHHHHhhh-----hHhhhhhhccCCCCCcchh-hHH
Q 003944 90 IKALSVNYAALLKE-----KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 90 ~~~~~~~~~~~~~~-----~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
++.|+++|...++. ...++.-|.||||||||-+ .++
T Consensus 3 ~~~l~~~~~~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l 44 (213)
T TIGR01277 3 LDKVRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLI 44 (213)
T ss_pred EEeeeEEeCCcceeeEEEEeCCcEEEEECCCCCCHHHHHHHH
Confidence 45566666432221 2456677999999999998 664
No 413
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.34 E-value=32 Score=30.06 Aligned_cols=66 Identities=24% Similarity=0.281 Sum_probs=44.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003944 282 MRKELNGKLSELRRLQMELNRRED--GDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (784)
Q Consensus 282 L~~EL~ele~EL~~LqeeL~~~e~--e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~ 347 (784)
+...+.++...|..|..+-...-. -....+|..|+..+..+++.+..+...+..+..+++.++...
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777765431111 112357888888888888888888888888888888776543
No 414
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=69.32 E-value=1.7 Score=45.28 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.4
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l 55 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLL 55 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 456788999999999988 554
No 415
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=69.30 E-value=1.7 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=17.6
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~ 50 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVV 50 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999998 6543
No 416
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=69.18 E-value=1.7 Score=45.73 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=18.3
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLN 50 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 467788999999999999 6644
No 417
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.18 E-value=1.7 Score=45.69 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=17.6
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l 48 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCF 48 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 457778999999999998 654
No 418
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=69.13 E-value=59 Score=28.09 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 560 MLAEGKGRANKLEEDNAKLRLAVE 583 (784)
Q Consensus 560 ~l~dlK~ei~kL~~eie~L~kaLd 583 (784)
.+.+.-.++.+|+.+++.+.+.|+
T Consensus 41 ~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 41 QLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444556666666655554
No 419
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=68.88 E-value=1.8 Score=45.35 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=17.9
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
..++.-|.||||||||-+ ..|.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~ 48 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCIN 48 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 467788999999999988 6544
No 420
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.86 E-value=82 Score=29.31 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 474 IDGLNNKLANCMRTIEAKNVELLNLQTALGQ 504 (784)
Q Consensus 474 ieeLkeeLe~l~~eLe~~n~El~nLq~eLeq 504 (784)
+..++.++..+...+.....++.....+++.
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 421
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=68.85 E-value=2.1 Score=45.78 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=17.3
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~ 59 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLA 59 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 346777999999999988 6543
No 422
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=68.84 E-value=2 Score=45.94 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=18.0
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~ 59 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLV 59 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456788999999999998 7653
No 423
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=68.83 E-value=1.7 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.153 Sum_probs=18.5
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ .+|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~ 50 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLE 50 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHh
Confidence 567888999999999998 6644
No 424
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=68.76 E-value=1.9 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=17.9
Q ss_pred hHhhhhhhccCCCCCcchh-hHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+..++.-|.||||||||-+ ..|
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i 53 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVI 53 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 3567788999999999988 653
No 425
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.73 E-value=1.7 Score=44.65 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=16.4
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
++.-|.||||||||-+ ..+
T Consensus 24 e~~~i~G~nGsGKSTLl~~l 43 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCI 43 (214)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 7888999999999988 554
No 426
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=68.73 E-value=1.7 Score=44.77 Aligned_cols=21 Identities=33% Similarity=0.287 Sum_probs=17.4
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l 51 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAI 51 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 467888999999999988 554
No 427
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=68.60 E-value=58 Score=32.46 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHh
Q 003944 577 KLRLAVEQSMTRLN 590 (784)
Q Consensus 577 ~L~kaLdkAl~rl~ 590 (784)
.+..||+.|+..++
T Consensus 82 ~~~~ai~~al~~ak 95 (155)
T PF06810_consen 82 KKDSAIKSALKGAK 95 (155)
T ss_pred HHHHHHHHHHHHcC
Confidence 34556666666543
No 428
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=68.59 E-value=2.1 Score=42.67 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=17.2
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-+.||||||||-+ ..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l 48 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLL 48 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 654
No 429
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=68.51 E-value=1.8 Score=44.43 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.5
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l 51 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRML 51 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 457788999999999988 664
No 430
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=68.39 E-value=1.8 Score=45.73 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=17.5
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l 51 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCL 51 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 456788999999999998 654
No 431
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=68.21 E-value=1.9 Score=45.21 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=17.6
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l 48 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVL 48 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 457788999999999988 664
No 432
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.14 E-value=2.2e+02 Score=33.53 Aligned_cols=20 Identities=5% Similarity=0.082 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 003944 325 ENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 325 ei~eLe~ei~eLe~eLe~~~ 344 (784)
+...-+..|+.+.+.+.+++
T Consensus 349 ~~~~~r~ri~~i~e~v~eLq 368 (508)
T KOG3091|consen 349 EVKQHRIRINAIGERVTELQ 368 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555
No 433
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.05 E-value=2.5e+02 Score=33.09 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 568 ANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 568 i~kL~~eie~L~kaLdkAl~rl~~ 591 (784)
+.+++.+...-++..+.+|+.|+.
T Consensus 387 leelk~~f~a~q~K~a~tikeL~~ 410 (613)
T KOG0992|consen 387 LEELKVQFTAKQEKHAETIKELEI 410 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555556666665553
No 434
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=68.00 E-value=3.9 Score=49.99 Aligned_cols=104 Identities=18% Similarity=0.082 Sum_probs=62.0
Q ss_pred HHHHhhhhHhhhhhhccCCCCCcchh-------------------------h------HHHHhhhccccc----cccccc
Q 003944 97 YAALLKEKEEQISRLNGEYGLLKQNL-------------------------D------ATNAALNAFRNG----NSKASS 141 (784)
Q Consensus 97 ~~~~~~~~~~~~~~~~g~NGSgKsni-------------------------d------~~~f~L~~~~~~----~~ra~~ 141 (784)
|.+|+..+.+|-.=++|+-||||+=- + -||-|.|=+.|- .+|--+
T Consensus 77 y~~m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK 156 (691)
T cd01380 77 YKQMTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGK 156 (691)
T ss_pred HHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccce
Confidence 89999999999999999999999732 1 133333422211 334444
Q ss_pred CCCcccCCCC------------CCCCCcccccccccCCCCccceeccCCccchhhchhhhccCC-ccccccccccchh
Q 003944 142 NGINIPKGSG------------DLSPSRQHKLTAQVKNRHAGHQLQNGFSKQDGVSNGSHALQT-EVVQSSKMQGKEK 206 (784)
Q Consensus 142 ~~dli~~~~~------------~~~p~r~~k~~~~~~~~~s~~~~~Ng~~~~~~~~~l~~~~i~-p~gyn~vmqgd~t 206 (784)
...+-|+..+ .++ |-++....+-||+--||.+.|.+..+... -++. +..|+..-||...
T Consensus 157 ~~~l~f~~~g~i~Ga~i~~yLLEks--Rv~~~~~gErnfHIFYqLl~g~~~~~~~~----l~L~~~~~y~yl~~~~~~ 228 (691)
T cd01380 157 YIQILFDKRGRIIGANMRTYLLEKS--RVVFQAPGERNYHIFYQLCAGAPSQELKE----LHLGHADKFNYLNQGGAP 228 (691)
T ss_pred EEEEEECCCCCEEEEEEEEeecccc--ceeecCCCCChhHHHHHHHhCCCHHHHHH----hCCCCHHHCccccCCCCc
Confidence 4444443221 111 76766655667877678888855433222 2332 3567777777653
No 435
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.98 E-value=1.9 Score=45.50 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=18.3
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~ 52 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLN 52 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 567888999999999988 6653
No 436
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.93 E-value=1.9 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=17.8
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 457788999999999987 6544
No 437
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=67.85 E-value=1.9 Score=44.56 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=18.2
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~ 55 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLY 55 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 567888999999999998 6543
No 438
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=67.85 E-value=2.3e+02 Score=32.41 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003944 315 LKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (784)
Q Consensus 315 Lq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~ 347 (784)
|+..++....++..++.-...|+.++..+...+
T Consensus 135 L~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~ 167 (384)
T PF03148_consen 135 LQRTLEQAEEQLRLLRAARYRLEKDLSDKFEAL 167 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666666666666666655543
No 439
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=67.78 E-value=2.2 Score=45.97 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.8
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
..++.-|.||||||||-+ .+|.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~la 48 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALA 48 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999988 6653
No 440
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.75 E-value=2.2 Score=44.99 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=18.2
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 457788999999999999 6653
No 441
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=67.63 E-value=1.9 Score=41.85 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=17.1
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-+.||||||||-+ ..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l 46 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLI 46 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 457788999999999977 553
No 442
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=67.61 E-value=4.4 Score=49.46 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.9
Q ss_pred HHHHhhhhHhhhhhhccCCCCCcchh
Q 003944 97 YAALLKEKEEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 97 ~~~~~~~~~~~~~~~~g~NGSgKsni 122 (784)
|.+|+..+++|-.=++|+-||||+=-
T Consensus 79 y~~m~~~~~~QsIiisGESGaGKTe~ 104 (674)
T cd01384 79 YRAMINEGKSQSILVSGESGAGKTET 104 (674)
T ss_pred HHHHHHcCCCceEEEECCCCCCchhH
Confidence 88999999999999999999999743
No 443
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.61 E-value=1.9 Score=44.61 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=18.4
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ .++.
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~ 50 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLM 50 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 557788999999999999 7654
No 444
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=67.58 E-value=2.4e+02 Score=32.54 Aligned_cols=236 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred cccchhHHhhhcHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHhhHhHHHHHHhhhhc
Q 003944 201 MQGKEKELADLLEEKNRSLA-----AERAAYESQTRQLRMELEQQRN----KFADVQLKLQEEQRLNESFQDELKSLKMD 271 (784)
Q Consensus 201 mqgd~t~~~~m~e~err~i~-----a~~a~~e~ei~~l~~ELe~~~e----kle~l~~~LeE~~~~le~Lkeel~~le~~ 271 (784)
.+.+| +|-|-.++--.+| +.+..+-.+++.+---.++.++ .+.+--.+|...+-.++++-+.-.+.-.
T Consensus 84 ~~Asv--~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~v- 160 (552)
T KOG2129|consen 84 LLASV--EIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFV- 160 (552)
T ss_pred hhhhh--HHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHH-
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 003944 272 KDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLK-RVVATLEKENNSLKMEKTELVAALEKNRKSSNEK 350 (784)
Q Consensus 272 ~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq-~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~ 350 (784)
.|....+.++.++---++.-|+.|..+.-..+. ++++-| ..+..|=+.+..|+.+..-|+..++.--..-.
T Consensus 161 -nKlm~ki~Klen~t~~kq~~leQLRre~V~len-----tlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~-- 232 (552)
T KOG2129|consen 161 -NKLMNKIRKLENKTLLKQNTLEQLRREAVQLEN-----TLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPS-- 232 (552)
T ss_pred -HHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--
Q ss_pred cCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 003944 351 IFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEE 430 (784)
Q Consensus 351 L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~E 430 (784)
+-++|..+-.-...... .+...|+.|+.|++.+......++.+....-.+....+..+.++...+.+.+..
T Consensus 233 ~prdia~~~~~~gD~a~---------~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~ 303 (552)
T KOG2129|consen 233 LPRDIAKIPDVHGDEAA---------AEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLIN 303 (552)
T ss_pred chhhhhcCccccCchHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003944 431 LRENNEYQRAQILHLENVLKQTLAKQ 456 (784)
Q Consensus 431 L~~~~e~lr~eL~~lEreLk~l~~~~ 456 (784)
--.+.+.+-..+.+-+..++....++
T Consensus 304 e~erRealcr~lsEsesslemdeery 329 (552)
T KOG2129|consen 304 ELERREALCRMLSESESSLEMDEERY 329 (552)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHH
No 445
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=67.36 E-value=2 Score=45.29 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=17.3
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l 51 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSI 51 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 456788999999999988 653
No 446
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.28 E-value=2 Score=45.39 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.5
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFN 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 467788999999999999 7654
No 447
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=67.27 E-value=2.3 Score=45.53 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=17.7
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~ 54 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIG 54 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999988 6544
No 448
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.22 E-value=2 Score=45.25 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=18.1
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ .+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSIN 50 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999999 7654
No 449
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=67.18 E-value=2 Score=44.01 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=17.3
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l 48 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLI 48 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 566778999999999988 553
No 450
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=67.18 E-value=2.3 Score=44.42 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=17.6
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
..++.-|.||||||||-+ ..+.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~ 49 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVIT 49 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999988 6543
No 451
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=67.15 E-value=2e+02 Score=31.44 Aligned_cols=39 Identities=8% Similarity=-0.037 Sum_probs=23.5
Q ss_pred chhhchhhhccCCccccccccccchhHHhhhcHHHhHHHHHHHHHHHH
Q 003944 181 QDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLAAERAAYES 228 (784)
Q Consensus 181 ~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~a~~a~~e~ 228 (784)
.||.-.|.+- ..|+ +.+-||| -||..|-.+|+.+++|=.
T Consensus 23 AeiL~WLv~r-ydP~---~~i~~~i-----~tE~dRV~Fik~v~~~~~ 61 (267)
T PF10234_consen 23 AEILRWLVKR-YDPD---ADIPGDI-----DTEQDRVFFIKSVAEFMA 61 (267)
T ss_pred HHHHHHHHHH-cCCC---CCCCCcC-----CcHHHHHHHHHHHHHHHH
Confidence 4555555442 2222 3455665 478888888888888733
No 452
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=67.08 E-value=2 Score=43.49 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=18.5
Q ss_pred HhhhhhhccCCCCCcchh-hHHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f 127 (784)
..++.-|.||||||||=+ ..+.-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G 48 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAG 48 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456778999999999998 76543
No 453
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.01 E-value=2.4 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=17.8
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~ 59 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLN 59 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 456778999999999988 6544
No 454
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=67.00 E-value=2 Score=45.71 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.8
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~ 49 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALS 49 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999988 6654
No 455
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=66.97 E-value=2.7e+02 Score=32.91 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH
Q 003944 602 RRIVIKLLVTYFQRNHSKEVLDLM 625 (784)
Q Consensus 602 k~lv~nL~~~y~~~~~~~evL~Li 625 (784)
=+.|.++|..-.+.....+|.++.
T Consensus 352 LrtI~~~Wr~e~q~~na~eIa~~a 375 (475)
T PRK10361 352 LRTIANLWRYEHQSRNAQQIADRA 375 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554444443333333333
No 456
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.96 E-value=2.1 Score=43.38 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=18.0
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999998 6643
No 457
>PTZ00014 myosin-A; Provisional
Probab=66.92 E-value=4.9 Score=50.02 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=23.3
Q ss_pred HHHHhhhhHhhhhhhccCCCCCcc
Q 003944 97 YAALLKEKEEQISRLNGEYGLLKQ 120 (784)
Q Consensus 97 ~~~~~~~~~~~~~~~~g~NGSgKs 120 (784)
|.+|+..+++|-.=++|+-||||+
T Consensus 174 y~~m~~~~~~QsIiiSGESGAGKT 197 (821)
T PTZ00014 174 LENLHGVKKSQTIIVSGESGAGKT 197 (821)
T ss_pred HHHHHhcCCCceEEEEcCCCCCch
Confidence 889999999999999999999998
No 458
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=66.92 E-value=2.1 Score=45.09 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=17.2
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l 49 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCI 49 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 654
No 459
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.91 E-value=2.1 Score=45.11 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=18.2
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~ 50 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLN 50 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 456778999999999998 7653
No 460
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=66.84 E-value=76 Score=28.60 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 472 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 472 eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
.++..++.++..+...+...+.++..+...++++
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554444443
No 461
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=66.82 E-value=2.1 Score=44.89 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=18.3
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ +.|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~ 47 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIA 47 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456777999999999999 7764
No 462
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=66.79 E-value=2 Score=46.03 Aligned_cols=21 Identities=33% Similarity=0.284 Sum_probs=17.2
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l 53 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKAL 53 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999998 654
No 463
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=66.65 E-value=12 Score=41.59 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 003944 282 MRKELNGKLSELRRLQMEL 300 (784)
Q Consensus 282 L~~EL~ele~EL~~LqeeL 300 (784)
+.++|..++.-+..|...+
T Consensus 33 I~eRLsaLEssv~sL~~SV 51 (326)
T PF04582_consen 33 IRERLSALESSVASLSDSV 51 (326)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 464
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=66.63 E-value=2.1 Score=45.07 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.1
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 467788999999999988 6643
No 465
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.62 E-value=2.1 Score=45.15 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=17.7
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ +.|.
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~ 52 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFN 52 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 456777999999999998 7643
No 466
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=66.62 E-value=2 Score=45.84 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.3
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i 53 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTL 53 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 356778999999999998 764
No 467
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=66.60 E-value=2.5 Score=43.96 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=16.1
Q ss_pred hhhhhhccCCCCCcchh-hHH
Q 003944 106 EQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~ 125 (784)
-++.-|.||||||||-+ ..+
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l 26 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAI 26 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 35667899999999988 653
No 468
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=66.56 E-value=2.1 Score=43.49 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.2
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
..++.-|.||||||||-+ ..|.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~ 56 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALA 56 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 466788999999999988 7653
No 469
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=66.54 E-value=96 Score=33.74 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHH
Q 003944 235 MELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVEN 314 (784)
Q Consensus 235 ~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tiee 314 (784)
.++...-.+++.+...+.=...+++.+.+...+... .+..+.+.......+.....+++.+.+++...+. .+.+
T Consensus 152 ~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~-~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Ek-----e~~e 225 (269)
T PF05278_consen 152 KEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQ-HETREEEKEEKDRKLELKKEELEELEEELKQKEK-----EVKE 225 (269)
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 315 LKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 315 Lq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
++..+.++...+.+++.+-..|...+..++.
T Consensus 226 ~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~s 256 (269)
T PF05278_consen 226 IKERITEMKGRLGELEMESTRLSKTIKSIKS 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.52 E-value=2 Score=43.89 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=17.8
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
..++.-|.||||||||-+ ..+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~ 54 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALA 54 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhc
Confidence 456778999999999999 6643
No 471
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=66.49 E-value=2.1 Score=43.56 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=18.3
Q ss_pred hHhhhhhhccCCCCCcchh-hHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
..-++.-+.||||||||-+ ..|
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i 51 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSAL 51 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 3567888999999999998 664
No 472
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=66.40 E-value=2.1 Score=45.76 Aligned_cols=21 Identities=33% Similarity=0.279 Sum_probs=17.5
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
..++.-|.||||||||-+ ..|
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l 59 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKML 59 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHH
Confidence 467788999999999988 654
No 473
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=66.39 E-value=2.1 Score=45.49 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=17.6
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l 59 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTF 59 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 567788999999999988 664
No 474
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=66.36 E-value=54 Score=30.18 Aligned_cols=97 Identities=13% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHH
Q 003944 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS-SNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKD 388 (784)
Q Consensus 310 ~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e-~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~E 388 (784)
..+..++..+..+..++..+...+.+...-++.+... -...+-.-|..+-.... .-+ ....++..++.++.+
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~-~~e------a~~~Le~~~e~le~~ 78 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQE-KEE------ARTELKERLETIELR 78 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhcc-HHH------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 389 LKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 389 Leele~e~~ka~~EL~rLr~eL~e~ 413 (784)
+..+.........++..++.++.++
T Consensus 79 i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 79 IKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=66.35 E-value=3.3e+02 Score=33.75 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=29.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHH
Q 003944 215 KNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDE 264 (784)
Q Consensus 215 err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkee 264 (784)
+||--+-.-..|-.++-..+.++-...-.+-++...+.+....-..|+.+
T Consensus 280 eRR~~~~~al~~R~e~~~sr~~~~~~q~r~v~~srE~ael~~~E~~LE~D 329 (1480)
T COG3096 280 ERRVHLDQALEFRRELYTSRQQLAAEQYRHVDMSRELAELNGAEGDLEAD 329 (1480)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 45544444556667777777777766666666666666654444444433
No 476
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=66.35 E-value=1.8e+02 Score=36.11 Aligned_cols=8 Identities=0% Similarity=0.015 Sum_probs=3.7
Q ss_pred CCchhhhh
Q 003944 681 NQIYGLTF 688 (784)
Q Consensus 681 ~~Sfs~lw 688 (784)
++||....
T Consensus 544 GKTtva~n 551 (726)
T PRK09841 544 GKTFVSST 551 (726)
T ss_pred CHHHHHHH
Confidence 44554444
No 477
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.28 E-value=2.1 Score=45.40 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.1
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999998 7654
No 478
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.25 E-value=2.1 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=18.6
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
..++.-|.||||||||-+ ..|.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~i~ 49 (275)
T PRK13639 27 KGEMVALLGPNGAGKSTLFLHFN 49 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 567888999999999999 7653
No 479
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.17 E-value=2.1 Score=45.00 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=17.3
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i 49 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVF 49 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999998 654
No 480
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=66.11 E-value=2.6 Score=41.77 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.1
Q ss_pred hhhhccCCCCCcchh-hHHH
Q 003944 108 ISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~ 126 (784)
|.=|.||||||||-+ ..+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALL 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 445899999999999 5544
No 481
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.02 E-value=3.6e+02 Score=34.14 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 003944 310 DVVENLKRVVATLEK 324 (784)
Q Consensus 310 ~tieeLq~eieeL~k 324 (784)
...+.++...+.+..
T Consensus 398 ~~k~k~~~~~~~~~~ 412 (913)
T KOG0244|consen 398 KEKDKLRRRTDSCMN 412 (913)
T ss_pred hhHHHHHHHHHHHHH
Confidence 345555555555444
No 482
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=65.98 E-value=2.2 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=18.0
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
..++.-|.||||||||-+ ..|.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~ 51 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLS 51 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 567888999999999988 6543
No 483
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.96 E-value=2.2 Score=45.79 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=17.7
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l 55 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKIL 55 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 567788999999999998 654
No 484
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=65.96 E-value=2.2 Score=44.56 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=17.2
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l 47 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLL 47 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 356777999999999988 664
No 485
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=65.91 E-value=2.7 Score=44.00 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=17.9
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.-+.||||||||-+ ..+.-.|.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 45789999999999 87776664
No 486
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=65.78 E-value=2.2 Score=44.96 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=17.8
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..+.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLN 53 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 456788999999999988 6543
No 487
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.73 E-value=2.2 Score=44.85 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.0
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ ..|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK14266 28 KNSVTALIGPSGCGKSTFIRTLN 50 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 356778999999999998 7654
No 488
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=65.61 E-value=2.2 Score=45.19 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=18.6
Q ss_pred hHhhhhhhccCCCCCcchh-hHHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
+.-++.-|.||||||||-+ ..+.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALS 53 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567888999999999998 6543
No 489
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=65.52 E-value=2.7 Score=44.61 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=16.6
Q ss_pred HhhhhhhccCCCCCcchh-hH
Q 003944 105 EEQISRLNGEYGLLKQNL-DA 124 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~ 124 (784)
.-++.-|.||||||||-+ ..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~ 49 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRT 49 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456778999999999988 54
No 490
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=65.47 E-value=2.2 Score=45.10 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=0.0
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
++.-|.||||||||-+ ..+.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~ 49 (255)
T PRK11231 29 KITALIGPNGCGKSTLLKCFA 49 (255)
T ss_pred cEEEEECCCCCCHHHHHHHHh
No 491
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=65.43 E-value=5 Score=47.48 Aligned_cols=93 Identities=20% Similarity=0.156 Sum_probs=0.0
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCC----------------CCCC---CcccccccccC
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSG----------------DLSP---SRQHKLTAQVK 166 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~----------------~~~p---~r~~k~~~~~~ 166 (784)
+..-|.||+|||||-+ +.++=-+ +..-+.+.+||-. +++| ..-+|.+
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~~---------~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN---- 414 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGFL---------APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN---- 414 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC---------CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH----
Q ss_pred CCCccceeccC-CccchhhchhhhccCC-----ccccccccccchhHHhh----hcHHHhHHHHHHHH
Q 003944 167 NRHAGHQLQNG-FSKQDGVSNGSHALQT-----EVVQSSKMQGKEKELAD----LLEEKNRSLAAERA 224 (784)
Q Consensus 167 ~~~s~~~~~Ng-~~~~~~~~~l~~~~i~-----p~gyn~vmqgd~t~~~~----m~e~err~i~a~~a 224 (784)
--+-|. .|..+|...+.++|.. |+|+ .|.|.+ +|.+++..++=+.|
T Consensus 415 -----i~l~~~~~s~e~i~~al~~a~l~~~v~~p~GL-------dt~ige~G~~LSgGQ~QRlaLARA 470 (559)
T COG4988 415 -----ILLARPDASDEEIIAALDQAGLLEFVPKPDGL-------DTVIGEGGAGLSGGQAQRLALARA 470 (559)
T ss_pred -----hhccCCcCCHHHHHHHHHHhcHHHhhcCCCcc-------cchhccCCCCCCHHHHHHHHHHHH
No 492
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=65.42 E-value=2.7 Score=45.94 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=0.0
Q ss_pred hccCCCCCcchh-hHHH
Q 003944 111 LNGEYGLLKQNL-DATN 126 (784)
Q Consensus 111 ~~g~NGSgKsni-d~~~ 126 (784)
|.||||||||-+ ..+.
T Consensus 35 l~G~NGaGKSTLl~~l~ 51 (303)
T TIGR01288 35 LLGPNGAGKSTIARMLL 51 (303)
T ss_pred EECCCCCCHHHHHHHHh
No 493
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=65.31 E-value=2.3 Score=43.88 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
++.-|.||||||||-+ ..|.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~ 58 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLA 58 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHh
No 494
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=65.31 E-value=4.7 Score=49.18 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHhhhhHhhhhhhccCCCCCcc-----------------hh-h------HHHHhhhccccc----ccccccCCCcccC
Q 003944 97 YAALLKEKEEQISRLNGEYGLLKQ-----------------NL-D------ATNAALNAFRNG----NSKASSNGINIPK 148 (784)
Q Consensus 97 ~~~~~~~~~~~~~~~~g~NGSgKs-----------------ni-d------~~~f~L~~~~~~----~~ra~~~~dli~~ 148 (784)
|-.|+..+.+|-.=++|+-||||+ +| + .||-|.|=+.|- .+|--+...+-|+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~ 162 (677)
T cd01383 83 YNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGSGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFS 162 (677)
T ss_pred HHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEEC
Q ss_pred CCC------------CCCCCcccccccccCCCCccceeccCCccchhhchhhhccCCccccccccccchhHH--------
Q 003944 149 GSG------------DLSPSRQHKLTAQVKNRHAGHQLQNGFSKQDGVSNGSHALQTEVVQSSKMQGKEKEL-------- 208 (784)
Q Consensus 149 ~~~------------~~~p~r~~k~~~~~~~~~s~~~~~Ng~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~-------- 208 (784)
..+ .++ |.++....+-||+--||.+.|++..+-..+.-. .|+-|+..-||+...+
T Consensus 163 ~~g~i~ga~i~~yLLEks--Rv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~---~~~~y~yL~~~~~~~~~~~dd~~~ 237 (677)
T cd01383 163 ETGKISGAKIQTFLLEKS--RVVQCARGERSYHIFYQLCAGAPPALKEKLNLK---SASEYKYLKQSCCYSINGVDDAQR 237 (677)
T ss_pred CCCcEEEEEEEEEecCCC--ceeccCCCCchhHHHHHHHcCCCHHHHHHhCCC---CHHHCceecCCCcccCCCccHHHH
Q ss_pred ----------hhhcHHHhHHHHHHHH
Q 003944 209 ----------ADLLEEKNRSLAAERA 224 (784)
Q Consensus 209 ----------~~m~e~err~i~a~~a 224 (784)
+.+++++...|....|
T Consensus 238 f~~~~~al~~lG~~~~e~~~I~~iLa 263 (677)
T cd01383 238 FHTLVEALDIVHISKEDQENVFAMLA 263 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
No 495
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=65.16 E-value=2.3 Score=45.24 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
++.-|.||||||||-+ ..+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHh
No 496
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=65.07 E-value=2.5e+02 Score=32.00 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhchHHHHhHHHHHH
Q 003944 396 RDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIID 475 (784)
Q Consensus 396 ~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~~~e~lr~eL~~lEreLk~l~~~~e~l~~~n~~eI~~l~eqie 475 (784)
.+.+..||..++++....++.+..-.+...+.+.=+.+-....+=....+|..+..+ ...-..+|.
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdl--------------teLqQnEi~ 327 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDL--------------TELQQNEIA 327 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 476 GLNNKLANCMRTIE-AKNVELLNLQTALGQYFAEIEAKGHLERELALAREE 525 (784)
Q Consensus 476 eLkeeLe~l~~eLe-~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreE 525 (784)
.|+++++..+..+. +......+.+..++.++..+..++-.+++-...+.+
T Consensus 328 nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~qqv~Q~e 378 (455)
T KOG3850|consen 328 NLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQQQVVQLE 378 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=64.99 E-value=2.2 Score=44.76 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
++.-|.||||||||-+ ..+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~ 48 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLA 48 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHc
No 498
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.83 E-value=2e+02 Score=36.10 Aligned_cols=111 Identities=28% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 003944 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK-GHLERELALAREESAKLSEY-LKNADQRAEVSR 544 (784)
Q Consensus 467 I~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~-erle~El~~LreEie~L~~e-Lkeak~eie~l~ 544 (784)
+...+.-+.+-..+++.+-..++....++.....+++....+.+.. .+++.+...+.++...+..+ .+++++-+...+
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~ 583 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHH
Q 003944 545 SEKEEILVKLSH---------SEKMLAEGKGRANKLEEDNAK 577 (784)
Q Consensus 545 ~Eleel~ekL~~---------lE~~l~dlK~ei~kL~~eie~ 577 (784)
.+++.+-.++.+ ......+....+.+++..+..
T Consensus 584 ~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 584 KEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625 (782)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhh
No 499
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=64.83 E-value=96 Score=27.05 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 472 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV 542 (784)
Q Consensus 472 eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~ 542 (784)
+.++.|..++..+.+.+.....++..|+.+-..+..+.+. +..+...++.+...+...|..+-..++.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~---L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEE---LKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 500
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=64.82 E-value=3.6e+02 Score=33.69 Aligned_cols=350 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred cchhHHhhhcHHHhHHHH--HHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHhhHhHHHHHHhhhhcc
Q 003944 203 GKEKELADLLEEKNRSLA--AERAAYESQTRQLRMELEQQR--------NKFADVQLKLQEEQRLNESFQDELKSLKMDK 272 (784)
Q Consensus 203 gd~t~~~~m~e~err~i~--a~~a~~e~ei~~l~~ELe~~~--------ekle~l~~~LeE~~~~le~Lkeel~~le~~~ 272 (784)
|....+|+.++.+-.+|- .|-..--+.+.+.+.+-.... .-++.-+..+++.+..+.+-.=..+.+.-..
T Consensus 873 gkldglieakeaeenkihK~egEltcaE~i~q~kdee~altdhekeasicl~eeKDqei~EleailekQNca~eeakqn~ 952 (1424)
T KOG4572|consen 873 GKLDGLIEAKEAEENKIHKKEGELTCAECIKQMKDEEEALTDHEKEASICLIEEKDQEIEELEAILEKQNCAHEEAKQND 952 (1424)
T ss_pred cccchHHHHHHHHhhHHHHhhhhhHHHHHHHHcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcC
Q ss_pred cccHHHHHHHHHHHHh-HHHHHHHHHH----HHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003944 273 DKTSIEITEMRKELNG-KLSELRRLQM----ELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (784)
Q Consensus 273 ek~~~Ei~~L~~EL~e-le~EL~~Lqe----eL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~ 347 (784)
.-.......|..|+.+ ++.+...+.+ .+..++.+...+...++..+......++.++++++..+..+++.....+
T Consensus 953 eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 953 EISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred cccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 003944 348 NEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKI 427 (784)
Q Consensus 348 ~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~ 427 (784)
. . +-+..+...+-..-+....+.++..++.-.+.++.+...-....-.+.-..
T Consensus 1033 i-------------------Q--------ekE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~~~edrakqkei 1085 (1424)
T KOG4572|consen 1033 I-------------------Q--------EKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDGKCEDRAKQKEI 1085 (1424)
T ss_pred H-------------------h--------cccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH--------------------------HHhHHHHhhhhchHHHHhHHHHHHHHHHH
Q 003944 428 IEELREN-NEYQRAQILHLENVLKQ--------------------------TLAKQEEFKMMNHSEIQKSKEIIDGLNNK 480 (784)
Q Consensus 428 I~EL~~~-~e~lr~eL~~lEreLk~--------------------------l~~~~e~l~~~n~~eI~~l~eqieeLkee 480 (784)
..-|... .+.++.++..+...++. +-+++++. ..-....-..|..+...
T Consensus 1086 ~k~L~ehelenLrnEieklndkIkdnne~~QVglae~nslmTiekDmcaselfneheee----S~ifdaa~nKiakiHe~ 1161 (1424)
T KOG4572|consen 1086 DKILKEHELENLRNEIEKLNDKIKDNNEGDQVGLAEENSLMTIEKDMCASELFNEHEEE----SGIFDAAGNKIAKIHEI 1161 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHhccCCccchhHHHHHHHHHhhhh----cchHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 481 LANCMRTIEAKNVELLNLQ-TALGQYFAEIEAK-----GHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKL 554 (784)
Q Consensus 481 Le~l~~eLe~~n~El~nLq-~eLeqlq~eiEa~-----erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL 554 (784)
--+....+..+-.++.++- ..|..+.+.++.. +.+..-++.+.--+..+..+++..+.++-..-. .++-
T Consensus 1162 AfEieknlkeQaielank~dpeLraiead~deeitQkdee~eaiIa~ld~d~dh~~de~ekdreqLi~kLN-----cekd 1236 (1424)
T KOG4572|consen 1162 AFEIEKNLKEQAIELANKGDPELRAIEADIDEEITQKDEETEAIIAMLDIDIDHDRDEIEKDREQLIIKLN-----CEKD 1236 (1424)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHhhhhHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----ccHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 555 SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTR 588 (784)
Q Consensus 555 ~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~r 588 (784)
+.+..-++..+.+-.-..-.+..-.+||+..+.+
T Consensus 1237 eaiq~alkafe~e~ei~E~al~eKsk~Lenqiak 1270 (1424)
T KOG4572|consen 1237 EAIQGALKAFEDEPEIRECALKEKSKALENQIAK 1270 (1424)
T ss_pred HHHhhhHHHhccCHHHHHHHHHHHHHHHHHHHhc
Done!