Query 003944
Match_columns 784
No_of_seqs 324 out of 619
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:05:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kta_A Chromosome segregation 99.5 1.5E-14 5.3E-19 141.9 4.9 126 108-235 28-181 (182)
2 1w1w_A Structural maintenance 99.3 3.1E-13 1.1E-17 151.4 3.7 134 106-242 26-194 (430)
3 1e69_A Chromosome segregation 99.3 4.2E-13 1.4E-17 144.9 3.7 109 107-221 25-155 (322)
4 1c1g_A Tropomyosin; contractIl 99.3 1.2E-07 3.9E-12 96.9 42.0 54 537-590 229-282 (284)
5 1c1g_A Tropomyosin; contractIl 99.3 3.2E-07 1.1E-11 93.6 43.7 6 571-576 270-275 (284)
6 1i84_S Smooth muscle myosin he 99.2 2E-11 6.7E-16 152.8 9.3 26 101-126 673-699 (1184)
7 1i84_S Smooth muscle myosin he 99.0 4.1E-10 1.4E-14 140.9 10.0 44 227-270 856-899 (1184)
8 3qks_A DNA double-strand break 98.9 1.8E-10 6.2E-15 116.4 1.6 140 107-251 24-191 (203)
9 3auy_A DNA double-strand break 98.9 2.1E-09 7.2E-14 118.2 9.4 139 107-250 26-185 (371)
10 1f2t_A RAD50 ABC-ATPase; DNA d 98.8 8.2E-10 2.8E-14 106.3 2.2 97 107-211 24-149 (149)
11 4ad8_A DNA repair protein RECN 98.8 1E-07 3.5E-12 109.3 17.5 139 106-264 60-215 (517)
12 2o5v_A DNA replication and rep 98.1 6.9E-06 2.4E-10 90.1 9.7 96 108-220 28-135 (359)
13 3qkt_A DNA double-strand break 97.8 6.9E-06 2.3E-10 89.0 3.3 42 107-150 24-66 (339)
14 3na7_A HP0958; flagellar bioge 97.6 0.014 4.8E-07 60.8 24.6 114 224-347 14-127 (256)
15 4aby_A DNA repair protein RECN 97.5 9.8E-05 3.4E-09 81.4 7.2 91 108-220 62-170 (415)
16 3na7_A HP0958; flagellar bioge 97.4 0.015 5.2E-07 60.6 21.0 6 599-604 172-177 (256)
17 2v71_A Nuclear distribution pr 97.2 0.044 1.5E-06 54.5 21.4 40 377-416 46-85 (189)
18 3qf7_A RAD50; ABC-ATPase, ATPa 97.2 0.00015 5.2E-09 79.4 3.9 26 199-224 139-164 (365)
19 3vkg_A Dynein heavy chain, cyt 97.1 0.069 2.4E-06 72.4 27.9 61 517-577 2035-2095(3245)
20 2v71_A Nuclear distribution pr 96.9 0.34 1.1E-05 48.2 24.4 52 382-433 12-63 (189)
21 3vkg_A Dynein heavy chain, cyt 96.7 0.34 1.2E-05 66.0 29.7 12 111-122 1651-1662(3245)
22 1qhl_A Protein (cell division 96.6 0.00049 1.7E-08 70.7 1.2 48 178-226 148-206 (227)
23 3o0z_A RHO-associated protein 96.1 1.2 3.9E-05 43.5 23.0 94 469-565 45-138 (168)
24 2dfs_A Myosin-5A; myosin-V, in 96.0 0.17 5.8E-06 62.8 19.2 24 101-124 651-675 (1080)
25 2dfs_A Myosin-5A; myosin-V, in 95.4 0.12 4.1E-06 64.1 14.6 14 185-198 730-743 (1080)
26 3o0z_A RHO-associated protein 95.3 2.3 7.7E-05 41.4 21.3 81 314-415 52-132 (168)
27 2fxo_A Myosin heavy chain, car 94.9 1.5 5E-05 40.9 17.1 48 223-270 8-55 (129)
28 2efr_A General control protein 94.8 3.1 0.00011 40.1 25.4 41 468-508 73-113 (155)
29 2fxo_A Myosin heavy chain, car 94.4 2.6 9E-05 39.2 17.6 14 570-583 108-121 (129)
30 4gkw_A Spindle assembly abnorm 94.1 3.7 0.00013 38.1 20.8 33 554-586 100-132 (167)
31 3oja_B Anopheles plasmodium-re 94.0 0.85 2.9E-05 52.3 16.5 30 382-411 458-487 (597)
32 3tnu_A Keratin, type I cytoske 94.0 0.58 2E-05 43.7 12.2 96 468-583 34-129 (131)
33 3tnu_B Keratin, type II cytosk 93.9 0.66 2.3E-05 43.2 12.3 95 469-583 33-127 (129)
34 3oja_B Anopheles plasmodium-re 93.6 1.1 3.7E-05 51.4 16.2 68 515-582 507-574 (597)
35 2efr_A General control protein 93.4 5.9 0.0002 38.1 22.1 6 247-252 16-21 (155)
36 1upt_B Golgi autoantigen, golg 93.2 0.12 4.1E-06 41.8 5.1 41 602-642 7-47 (60)
37 2ocy_A RAB guanine nucleotide 92.8 7.1 0.00024 37.5 17.9 95 478-575 43-138 (154)
38 3ol1_A Vimentin; structural ge 92.4 0.7 2.4E-05 42.6 9.9 83 310-413 20-102 (119)
39 3u1c_A Tropomyosin alpha-1 cha 91.4 2.7 9.2E-05 37.5 12.3 41 261-301 28-68 (101)
40 2v4h_A NF-kappa-B essential mo 91.3 4.1 0.00014 36.8 13.1 38 473-510 25-62 (110)
41 2eqb_B RAB guanine nucleotide 90.6 6.8 0.00023 34.8 13.7 28 475-502 8-35 (97)
42 1ic2_A Tropomyosin alpha chain 90.2 3.3 0.00011 35.3 11.3 66 526-591 8-73 (81)
43 3tnu_B Keratin, type II cytosk 90.2 6.2 0.00021 36.5 14.1 33 467-499 77-109 (129)
44 3hnw_A Uncharacterized protein 90.2 1.3 4.6E-05 41.8 9.6 28 314-341 107-134 (138)
45 3s4r_A Vimentin; alpha-helix, 90.1 3.6 0.00012 36.2 11.7 35 472-506 9-43 (93)
46 3ghg_A Fibrinogen alpha chain; 90.0 8.1 0.00028 43.6 16.9 14 574-587 177-190 (562)
47 3tnu_A Keratin, type I cytoske 89.9 5.9 0.0002 36.8 13.8 33 467-499 79-111 (131)
48 3l4q_C Phosphatidylinositol 3- 89.4 7.1 0.00024 38.1 14.2 121 468-595 27-160 (170)
49 4gkw_A Spindle assembly abnorm 88.9 15 0.0005 34.2 22.9 17 529-545 103-119 (167)
50 3hnw_A Uncharacterized protein 88.7 9.6 0.00033 35.9 14.3 60 523-582 74-133 (138)
51 3s84_A Apolipoprotein A-IV; fo 88.5 26 0.00089 36.6 27.3 8 402-409 111-118 (273)
52 3u59_A Tropomyosin beta chain; 88.3 5.6 0.00019 35.3 11.8 23 278-300 45-67 (101)
53 3ghg_A Fibrinogen alpha chain; 87.6 14 0.00049 41.6 16.8 44 469-512 114-157 (562)
54 3swk_A Vimentin; cytoskeleton, 87.3 1.8 6.3E-05 37.6 7.7 37 312-348 2-38 (86)
55 2ocy_A RAB guanine nucleotide 87.0 22 0.00076 34.1 20.1 57 534-590 75-132 (154)
56 1l8d_A DNA double-strand break 85.7 16 0.00055 32.5 13.5 31 473-503 11-41 (112)
57 1htw_A HI0065; nucleotide-bind 85.5 0.24 8.3E-06 47.6 1.3 39 91-129 11-57 (158)
58 2jee_A YIIU; FTSZ, septum, coi 85.3 11 0.00039 32.3 11.3 39 466-504 21-59 (81)
59 3a7p_A Autophagy protein 16; c 85.1 9.5 0.00033 36.4 11.9 13 571-583 137-149 (152)
60 3ol1_A Vimentin; structural ge 84.3 25 0.00084 32.1 15.2 38 471-508 19-56 (119)
61 2jee_A YIIU; FTSZ, septum, coi 83.2 14 0.00049 31.6 11.1 30 515-544 25-54 (81)
62 4gp7_A Metallophosphoesterase; 82.8 0.26 8.9E-06 47.3 0.2 18 107-124 10-28 (171)
63 3ec2_A DNA replication protein 82.5 0.46 1.6E-05 45.5 1.8 36 94-129 26-62 (180)
64 3swk_A Vimentin; cytoskeleton, 82.3 11 0.00039 32.5 10.4 32 476-507 4-35 (86)
65 1deq_A Fibrinogen (alpha chain 82.1 62 0.0021 35.2 18.8 10 576-585 182-191 (390)
66 2eqb_B RAB guanine nucleotide 82.0 27 0.00092 30.9 14.6 27 556-582 66-92 (97)
67 3tr0_A Guanylate kinase, GMP k 81.9 0.38 1.3E-05 46.7 1.0 19 107-125 8-27 (205)
68 3a00_A Guanylate kinase, GMP k 81.6 0.41 1.4E-05 46.4 1.1 20 108-127 3-23 (186)
69 2b9c_A Striated-muscle alpha t 81.1 17 0.00058 34.6 12.1 69 525-593 53-121 (147)
70 3s84_A Apolipoprotein A-IV; fo 80.6 58 0.002 33.9 23.6 12 470-481 214-225 (273)
71 3i00_A HIP-I, huntingtin-inter 80.2 7.8 0.00027 35.7 9.1 13 556-568 103-115 (120)
72 1lvg_A Guanylate kinase, GMP k 80.1 0.48 1.6E-05 46.7 1.0 20 107-126 5-25 (198)
73 3hhm_B NISH2 P85alpha; PI3KCA, 79.4 56 0.0019 35.6 17.2 119 475-593 143-267 (373)
74 2v4h_A NF-kappa-B essential mo 79.3 32 0.0011 31.1 12.4 12 472-483 45-56 (110)
75 3a7p_A Autophagy protein 16; c 79.1 26 0.00088 33.5 12.4 36 313-348 64-99 (152)
76 1ye8_A Protein THEP1, hypothet 79.1 0.61 2.1E-05 45.4 1.4 21 110-130 4-25 (178)
77 1s96_A Guanylate kinase, GMP k 79.0 0.53 1.8E-05 47.5 1.0 21 107-127 17-38 (219)
78 3jsv_C NF-kappa-B essential mo 79.0 23 0.00079 31.1 11.1 28 475-502 5-32 (94)
79 2e7s_A RAB guanine nucleotide 78.3 5.3 0.00018 37.5 7.4 45 522-566 72-117 (135)
80 3bas_A Myosin heavy chain, str 78.3 17 0.00058 31.5 10.3 42 223-264 9-50 (89)
81 1znw_A Guanylate kinase, GMP k 78.2 0.59 2E-05 46.1 1.0 22 106-127 20-42 (207)
82 2v66_B Nuclear distribution pr 78.2 40 0.0014 30.6 16.5 29 517-545 42-70 (111)
83 2jeo_A Uridine-cytidine kinase 78.1 0.67 2.3E-05 47.0 1.4 25 106-130 25-50 (245)
84 3asz_A Uridine kinase; cytidin 77.7 0.66 2.3E-05 45.4 1.2 24 107-130 7-31 (211)
85 4eun_A Thermoresistant glucoki 77.6 0.48 1.6E-05 46.4 0.1 29 101-129 24-53 (200)
86 3oja_A Leucine-rich immune mol 77.2 84 0.0029 34.8 18.5 11 400-410 373-383 (487)
87 3tif_A Uncharacterized ABC tra 77.1 0.53 1.8E-05 48.0 0.3 18 105-122 30-47 (235)
88 1sq5_A Pantothenate kinase; P- 77.1 1.1 3.8E-05 47.3 2.8 24 107-130 81-105 (308)
89 1kag_A SKI, shikimate kinase I 76.9 0.77 2.6E-05 43.3 1.3 23 108-130 6-29 (173)
90 3lnc_A Guanylate kinase, GMP k 76.8 0.68 2.3E-05 46.3 1.0 20 107-126 28-48 (231)
91 3b85_A Phosphate starvation-in 76.7 0.81 2.8E-05 45.8 1.5 22 104-125 20-42 (208)
92 1go4_E MAD1 (mitotic arrest de 76.6 11 0.00036 33.7 8.5 35 309-343 11-45 (100)
93 1kgd_A CASK, peripheral plasma 76.3 0.72 2.5E-05 44.4 1.0 20 108-127 7-27 (180)
94 1x8y_A Lamin A/C; structural p 76.3 21 0.0007 30.8 10.2 15 570-584 67-81 (86)
95 3nwj_A ATSK2; P loop, shikimat 75.8 0.99 3.4E-05 46.6 1.9 38 90-130 35-73 (250)
96 2bbw_A Adenylate kinase 4, AK4 75.7 0.82 2.8E-05 46.2 1.3 25 107-131 28-53 (246)
97 3cvf_A Homer-3, homer protein 75.7 18 0.00063 30.8 9.4 50 467-519 22-71 (79)
98 2v66_B Nuclear distribution pr 75.5 47 0.0016 30.1 15.8 11 495-505 37-47 (111)
99 1u4q_A Spectrin alpha chain, b 75.2 78 0.0027 32.5 33.8 62 283-344 9-70 (322)
100 1zp6_A Hypothetical protein AT 75.2 0.75 2.6E-05 44.1 0.7 19 107-125 10-29 (191)
101 1wt6_A Myotonin-protein kinase 75.1 27 0.00091 29.9 10.1 55 495-552 12-66 (81)
102 2zqm_A Prefoldin beta subunit 75.0 29 0.00099 30.8 11.4 35 311-345 14-48 (117)
103 3c8u_A Fructokinase; YP_612366 74.7 1 3.5E-05 44.4 1.6 26 105-130 21-47 (208)
104 1z6g_A Guanylate kinase; struc 74.6 0.85 2.9E-05 45.6 1.0 23 105-127 22-45 (218)
105 2cbz_A Multidrug resistance-as 74.4 0.78 2.7E-05 46.8 0.7 22 105-126 30-52 (237)
106 2onk_A Molybdate/tungstate ABC 74.2 0.87 3E-05 46.6 1.0 19 107-125 25-44 (240)
107 1gk4_A Vimentin; intermediate 74.1 41 0.0014 28.7 12.3 55 515-583 24-78 (84)
108 1m1j_B Fibrinogen beta chain; 74.0 1.2E+02 0.0041 34.0 18.3 9 442-450 102-110 (464)
109 2pcj_A ABC transporter, lipopr 74.0 0.74 2.5E-05 46.5 0.4 21 105-125 29-50 (224)
110 3q8t_A Beclin-1; autophagy, AT 73.9 46 0.0016 29.2 14.7 29 561-589 62-90 (96)
111 3mq9_A Bone marrow stromal ant 73.8 64 0.0022 35.5 16.3 35 469-503 401-435 (471)
112 2e7s_A RAB guanine nucleotide 73.5 6.3 0.00022 37.0 6.5 50 540-589 69-119 (135)
113 2bdt_A BH3686; alpha-beta prot 73.1 1.1 3.6E-05 43.2 1.2 19 108-126 4-23 (189)
114 1deq_A Fibrinogen (alpha chain 72.9 1E+02 0.0034 33.6 16.4 10 377-386 53-62 (390)
115 3kbt_A Beta-I spectrin, spectr 72.9 90 0.0031 32.1 29.7 31 311-341 38-68 (326)
116 2pze_A Cystic fibrosis transme 72.9 0.89 3.1E-05 46.0 0.7 21 105-125 33-54 (229)
117 1g6h_A High-affinity branched- 72.8 0.9 3.1E-05 46.8 0.7 21 105-125 32-53 (257)
118 2j41_A Guanylate kinase; GMP, 72.5 1 3.5E-05 43.6 1.0 20 108-127 8-28 (207)
119 1ji0_A ABC transporter; ATP bi 72.4 0.93 3.2E-05 46.2 0.7 21 105-125 31-52 (240)
120 3oja_A Leucine-rich immune mol 72.4 57 0.002 36.1 15.5 20 571-590 454-473 (487)
121 2d2e_A SUFC protein; ABC-ATPas 72.1 1.1 3.6E-05 46.1 1.0 21 105-125 28-49 (250)
122 1mv5_A LMRA, multidrug resista 71.9 0.96 3.3E-05 46.2 0.7 21 105-125 27-48 (243)
123 1m1j_B Fibrinogen beta chain; 71.7 67 0.0023 36.0 15.4 42 221-262 93-134 (464)
124 3tau_A Guanylate kinase, GMP k 71.7 1.1 3.7E-05 44.3 1.0 21 107-127 9-30 (208)
125 1knq_A Gluconate kinase; ALFA/ 71.5 1.3 4.3E-05 42.0 1.3 20 107-126 9-29 (175)
126 2ehv_A Hypothetical protein PH 71.4 1.1 3.8E-05 44.6 1.0 22 105-126 29-51 (251)
127 4e22_A Cytidylate kinase; P-lo 71.4 1.2 4.3E-05 45.4 1.4 25 107-131 28-53 (252)
128 2if2_A Dephospho-COA kinase; a 71.2 1.2 4E-05 43.4 1.1 21 109-130 4-25 (204)
129 3mq9_A Bone marrow stromal ant 71.1 69 0.0024 35.3 15.7 28 317-344 443-470 (471)
130 2ff7_A Alpha-hemolysin translo 71.1 1 3.6E-05 46.2 0.7 20 105-124 34-54 (247)
131 2v9p_A Replication protein E1; 71.1 1.8 6.1E-05 46.1 2.5 39 89-127 103-148 (305)
132 1sgw_A Putative ABC transporte 71.0 0.87 3E-05 45.9 0.1 21 105-125 34-55 (214)
133 1b0u_A Histidine permease; ABC 70.9 1 3.6E-05 46.6 0.7 21 105-125 31-52 (262)
134 2eyu_A Twitching motility prot 70.9 1.2 4E-05 46.2 1.0 25 105-129 24-49 (261)
135 4h22_A Leucine-rich repeat fli 70.8 35 0.0012 30.5 10.3 34 470-503 21-54 (103)
136 2qi9_C Vitamin B12 import ATP- 70.8 1.1 3.6E-05 46.3 0.7 21 105-125 25-46 (249)
137 3gfo_A Cobalt import ATP-bindi 70.7 1.1 3.6E-05 47.0 0.7 34 89-122 9-50 (275)
138 2olj_A Amino acid ABC transpor 70.4 1.1 3.7E-05 46.6 0.7 37 89-125 26-70 (263)
139 1vpl_A ABC transporter, ATP-bi 70.2 1.1 3.8E-05 46.3 0.7 21 105-125 40-61 (256)
140 1fxk_A Prefoldin; archaeal pro 70.2 34 0.0012 29.9 10.5 35 311-345 9-43 (107)
141 2ghi_A Transport protein; mult 70.0 1.1 3.9E-05 46.3 0.7 21 105-125 45-66 (260)
142 2yz2_A Putative ABC transporte 69.9 1.2 4.1E-05 46.2 0.9 21 105-125 32-53 (266)
143 1jjv_A Dephospho-COA kinase; P 69.7 1.4 4.8E-05 42.9 1.3 22 109-130 5-26 (206)
144 3aez_A Pantothenate kinase; tr 69.5 1.3 4.4E-05 47.2 1.0 28 104-131 88-116 (312)
145 2yv5_A YJEQ protein; hydrolase 69.3 1.5 5.2E-05 46.2 1.5 31 96-126 155-186 (302)
146 2ixe_A Antigen peptide transpo 69.3 1.2 4.1E-05 46.4 0.7 22 104-125 43-65 (271)
147 2kjq_A DNAA-related protein; s 69.1 1.6 5.5E-05 41.0 1.5 25 105-129 35-60 (149)
148 1x79_B RAB GTPase binding effe 68.8 69 0.0023 29.1 13.9 26 473-498 7-32 (112)
149 2zu0_C Probable ATP-dependent 68.7 1.4 4.7E-05 45.8 1.0 37 89-125 22-66 (267)
150 2nq2_C Hypothetical ABC transp 68.6 1 3.6E-05 46.4 0.1 22 105-126 30-52 (253)
151 4g1u_C Hemin import ATP-bindin 68.5 1 3.5E-05 46.8 0.0 36 89-124 13-56 (266)
152 1x79_B RAB GTPase binding effe 68.4 70 0.0024 29.0 12.6 37 310-346 6-42 (112)
153 3uie_A Adenylyl-sulfate kinase 68.3 1.6 5.4E-05 42.6 1.3 24 106-129 25-49 (200)
154 2ihy_A ABC transporter, ATP-bi 68.1 1.3 4.5E-05 46.4 0.7 37 89-125 23-67 (279)
155 3t61_A Gluconokinase; PSI-biol 67.4 1.7 5.9E-05 42.2 1.3 23 108-130 20-43 (202)
156 4a74_A DNA repair and recombin 67.4 1.2 4.1E-05 43.7 0.2 21 106-126 25-46 (231)
157 1fxk_A Prefoldin; archaeal pro 67.3 63 0.0022 28.1 11.8 34 472-505 8-41 (107)
158 2pjz_A Hypothetical protein ST 66.6 1.5 5E-05 45.6 0.7 20 106-125 30-50 (263)
159 2bbs_A Cystic fibrosis transme 65.9 1.4 4.9E-05 46.4 0.5 21 105-125 63-84 (290)
160 1w9i_A Myosin II heavy chain; 65.6 2.2 7.6E-05 51.0 2.0 52 69-122 135-188 (770)
161 2i1j_A Moesin; FERM, coiled-co 65.4 5.9 0.0002 45.8 5.5 61 280-345 338-398 (575)
162 3a7o_A Autophagy protein 16; c 65.2 21 0.00071 29.7 7.1 56 278-338 19-74 (75)
163 1via_A Shikimate kinase; struc 65.1 2 7E-05 40.6 1.4 23 108-130 6-29 (175)
164 1cke_A CK, MSSA, protein (cyti 65.0 2 7E-05 42.2 1.4 23 108-130 7-30 (227)
165 3cve_A Homer protein homolog 1 64.3 63 0.0022 27.1 10.9 50 467-519 16-65 (72)
166 2i3b_A HCR-ntpase, human cance 64.3 2.1 7.1E-05 42.1 1.3 22 108-129 3-25 (189)
167 3sop_A Neuronal-specific septi 64.2 1.8 6.2E-05 45.0 0.8 17 110-126 6-23 (270)
168 3uul_A Utrophin; spectrin repe 64.0 72 0.0025 27.6 11.9 35 556-590 82-116 (118)
169 3nmd_A CGMP dependent protein 64.0 20 0.0007 30.0 6.9 30 315-344 38-67 (72)
170 3iox_A AGI/II, PA; alpha helix 63.6 1.8E+02 0.0062 32.7 16.6 22 394-415 9-30 (497)
171 2zqm_A Prefoldin beta subunit 62.9 81 0.0028 27.8 13.2 36 470-505 11-46 (117)
172 3tul_A Cell invasion protein S 62.9 67 0.0023 30.4 11.0 56 533-588 71-129 (158)
173 3ney_A 55 kDa erythrocyte memb 62.7 2.1 7.3E-05 42.6 1.0 19 108-126 21-40 (197)
174 3llm_A ATP-dependent RNA helic 62.2 5.5 0.00019 39.8 4.0 18 105-122 75-92 (235)
175 1x8y_A Lamin A/C; structural p 61.6 50 0.0017 28.4 9.4 39 467-505 30-68 (86)
176 3i00_A HIP-I, huntingtin-inter 61.5 73 0.0025 29.2 10.9 17 473-489 16-32 (120)
177 3jvv_A Twitching mobility prot 61.5 2.3 7.9E-05 46.2 1.1 25 107-131 124-149 (356)
178 3iox_A AGI/II, PA; alpha helix 60.4 1.9E+02 0.0064 32.6 15.9 30 554-583 75-104 (497)
179 3cm0_A Adenylate kinase; ATP-b 60.0 2.9 9.8E-05 39.7 1.4 23 108-130 6-29 (186)
180 2ze6_A Isopentenyl transferase 59.7 2.8 9.5E-05 42.9 1.2 22 109-130 4-26 (253)
181 2x8a_A Nuclear valosin-contain 59.5 2.9 9.9E-05 43.4 1.4 22 109-130 47-69 (274)
182 2npi_A Protein CLP1; CLP1-PCF1 59.4 2.6 8.8E-05 47.4 1.0 36 89-124 120-157 (460)
183 2qor_A Guanylate kinase; phosp 58.6 2.9 0.0001 40.8 1.2 22 108-129 14-36 (204)
184 3lw7_A Adenylate kinase relate 58.6 3 0.0001 38.5 1.2 22 109-131 4-26 (179)
185 3vaa_A Shikimate kinase, SK; s 58.6 3.1 0.00011 40.4 1.4 24 107-130 26-50 (199)
186 1p9r_A General secretion pathw 58.5 2.7 9.3E-05 46.7 1.0 26 104-129 165-191 (418)
187 4h22_A Leucine-rich repeat fli 58.5 59 0.002 29.0 9.3 71 273-348 12-82 (103)
188 3nh6_A ATP-binding cassette SU 58.3 1.8 6.1E-05 46.1 -0.5 36 89-124 55-99 (306)
189 3mq7_A Bone marrow stromal ant 57.8 1.1E+02 0.0038 27.8 15.4 27 519-545 73-99 (121)
190 2ewv_A Twitching motility prot 57.6 2.9 0.0001 45.5 1.1 26 105-130 135-161 (372)
191 1z47_A CYSA, putative ABC-tran 57.6 2.9 9.9E-05 45.4 1.0 21 105-125 40-61 (355)
192 1rz3_A Hypothetical protein rb 57.5 3 0.0001 40.7 1.0 24 106-129 22-46 (201)
193 3qh9_A Liprin-beta-2; coiled-c 57.5 39 0.0013 28.8 7.6 30 272-301 49-78 (81)
194 3mov_A Lamin-B1; LMNB1, B-type 57.3 40 0.0014 29.7 8.1 13 571-583 77-89 (95)
195 3uun_A Dystrophin; triple heli 57.2 94 0.0032 26.7 14.4 35 556-590 82-116 (119)
196 2yyz_A Sugar ABC transporter, 57.2 3 0.0001 45.4 1.0 21 105-125 28-49 (359)
197 3cvf_A Homer-3, homer protein 57.0 34 0.0012 29.2 7.3 39 375-413 22-60 (79)
198 1gk4_A Vimentin; intermediate 56.9 91 0.0031 26.5 12.8 39 467-505 28-66 (84)
199 3kb2_A SPBC2 prophage-derived 56.9 3.5 0.00012 38.3 1.3 22 109-130 4-26 (173)
200 3trt_A Vimentin; cytoskeleton, 56.6 78 0.0027 26.2 9.6 40 472-511 35-74 (77)
201 2w0m_A SSO2452; RECA, SSPF, un 56.3 3.5 0.00012 40.1 1.3 20 107-126 24-44 (235)
202 1ex7_A Guanylate kinase; subst 56.1 3.8 0.00013 40.3 1.5 17 111-127 6-23 (186)
203 3iv1_A Tumor susceptibility ge 55.8 61 0.0021 27.6 8.6 23 497-519 15-37 (78)
204 2it1_A 362AA long hypothetical 55.7 3.2 0.00011 45.2 1.0 21 105-125 28-49 (362)
205 4db1_A Myosin-7; S1DC, cardiac 55.7 6 0.0002 47.4 3.3 52 69-122 134-187 (783)
206 1q3t_A Cytidylate kinase; nucl 55.6 3.7 0.00013 41.1 1.3 23 108-130 18-41 (236)
207 2lw1_A ABC transporter ATP-bin 55.5 87 0.003 26.8 10.0 62 277-338 22-84 (89)
208 3euj_A Chromosome partition pr 55.4 3.7 0.00013 46.5 1.4 23 107-129 30-53 (483)
209 3ozx_A RNAse L inhibitor; ATP 55.2 2.7 9.1E-05 48.2 0.2 20 106-125 25-45 (538)
210 3tui_C Methionine import ATP-b 55.0 3.4 0.00012 45.2 1.0 34 89-122 26-70 (366)
211 1w7j_A Myosin VA; motor protei 54.7 5.2 0.00018 48.0 2.6 130 69-205 119-293 (795)
212 2gza_A Type IV secretion syste 54.4 3.3 0.00011 44.8 0.8 23 105-127 174-197 (361)
213 2nrj_A HBL B protein; enteroto 54.2 1.4E+02 0.0047 32.1 13.5 150 429-585 119-297 (346)
214 1v43_A Sugar-binding transport 53.9 3.6 0.00012 45.0 1.0 21 105-125 36-57 (372)
215 1g29_1 MALK, maltose transport 53.9 3.6 0.00012 44.9 1.0 21 105-125 28-49 (372)
216 3fvq_A Fe(3+) IONS import ATP- 53.7 3.4 0.00012 45.0 0.8 20 105-124 29-49 (359)
217 1m1j_C Fibrinogen gamma chain; 53.3 1.3E+02 0.0046 33.1 13.4 20 311-330 106-125 (409)
218 3rlf_A Maltose/maltodextrin im 53.1 3.8 0.00013 45.0 1.0 21 105-125 28-49 (381)
219 3e70_C DPA, signal recognition 53.1 3.1 0.0001 44.7 0.2 19 104-122 127-145 (328)
220 2pt7_A CAG-ALFA; ATPase, prote 52.9 3.3 0.00011 44.3 0.5 22 105-126 170-192 (330)
221 1cii_A Colicin IA; bacteriocin 52.9 2.8E+02 0.0096 30.9 17.3 39 466-504 350-388 (602)
222 1u0l_A Probable GTPase ENGC; p 52.8 3.5 0.00012 43.3 0.6 30 96-125 159-189 (301)
223 1cii_A Colicin IA; bacteriocin 52.7 2.8E+02 0.0097 30.9 21.4 16 66-81 41-56 (602)
224 1ixz_A ATP-dependent metallopr 52.6 4.4 0.00015 40.8 1.3 18 110-127 53-71 (254)
225 3d31_A Sulfate/molybdate ABC t 52.5 2.7 9.4E-05 45.5 -0.2 21 105-125 25-46 (348)
226 2yl4_A ATP-binding cassette SU 52.5 4.1 0.00014 47.1 1.2 22 104-125 368-390 (595)
227 2vp4_A Deoxynucleoside kinase; 52.5 3.2 0.00011 41.5 0.2 17 106-122 20-36 (230)
228 2i1j_A Moesin; FERM, coiled-co 52.4 16 0.00056 42.1 6.2 29 568-596 435-463 (575)
229 1lkx_A Myosin IE heavy chain; 52.3 2.1 7.2E-05 50.7 -1.3 26 97-122 85-110 (697)
230 1in4_A RUVB, holliday junction 52.0 4.5 0.00015 42.9 1.4 24 107-130 52-76 (334)
231 1kk8_A Myosin heavy chain, str 51.7 8.2 0.00028 46.6 3.7 52 69-122 132-185 (837)
232 2pez_A Bifunctional 3'-phospho 51.4 4.8 0.00016 38.2 1.3 20 108-127 7-27 (179)
233 3ux8_A Excinuclease ABC, A sub 51.1 3.4 0.00012 48.4 0.3 19 104-122 42-60 (670)
234 1nij_A Hypothetical protein YJ 50.8 4.6 0.00016 42.8 1.2 19 108-126 6-25 (318)
235 2qm8_A GTPase/ATPase; G protei 50.7 5.1 0.00017 42.9 1.5 42 88-129 30-79 (337)
236 1wb9_A DNA mismatch repair pro 50.7 3.5 0.00012 49.6 0.2 19 107-125 608-627 (800)
237 3tqc_A Pantothenate kinase; bi 50.7 8.5 0.00029 41.1 3.3 23 108-130 94-117 (321)
238 3b5x_A Lipid A export ATP-bind 50.6 4.2 0.00014 46.8 0.9 22 104-125 367-389 (582)
239 1ewq_A DNA mismatch repair pro 50.6 3.6 0.00012 49.3 0.3 19 107-125 577-596 (765)
240 2p5t_B PEZT; postsegregational 50.4 4.6 0.00016 41.0 1.1 24 107-130 33-57 (253)
241 1oxx_K GLCV, glucose, ABC tran 49.9 2.7 9.3E-05 45.6 -0.8 21 105-125 30-51 (353)
242 3jsv_C NF-kappa-B essential mo 49.7 1.3E+02 0.0046 26.3 10.1 14 472-485 23-36 (94)
243 2qag_B Septin-6, protein NEDD5 49.7 5.1 0.00017 44.7 1.3 21 105-125 39-62 (427)
244 1lw7_A Transcriptional regulat 49.6 3.9 0.00013 44.0 0.4 21 107-127 171-192 (365)
245 3szr_A Interferon-induced GTP- 49.4 6.1 0.00021 45.9 2.0 19 109-127 48-67 (608)
246 4anj_A Unconventional myosin-V 49.3 2.6 8.7E-05 52.2 -1.2 128 69-203 107-277 (1052)
247 1qhx_A CPT, protein (chloramph 49.2 5.2 0.00018 37.6 1.2 23 108-130 5-28 (178)
248 1ly1_A Polynucleotide kinase; 49.2 5.2 0.00018 37.4 1.2 19 109-127 5-24 (181)
249 3b9q_A Chloroplast SRP recepto 49.1 5.2 0.00018 42.3 1.2 22 106-127 100-121 (302)
250 2cvh_A DNA repair and recombin 49.1 4.1 0.00014 39.5 0.4 16 107-122 21-36 (220)
251 3qf4_B Uncharacterized ABC tra 49.0 5 0.00017 46.4 1.2 22 104-125 379-401 (598)
252 1rj9_A FTSY, signal recognitio 49.0 5.3 0.00018 42.3 1.3 19 107-125 103-122 (304)
253 1m1j_A Fibrinogen alpha subuni 48.9 3.2E+02 0.011 30.5 16.3 41 470-510 116-156 (491)
254 1yqt_A RNAse L inhibitor; ATP- 48.9 4.8 0.00016 46.1 1.0 21 105-125 46-67 (538)
255 1n0w_A DNA repair protein RAD5 48.8 4.1 0.00014 40.2 0.4 20 107-126 25-45 (243)
256 4a82_A Cystic fibrosis transme 48.6 3.6 0.00012 47.4 -0.1 21 104-124 365-386 (578)
257 3thx_A DNA mismatch repair pro 48.5 4 0.00014 50.0 0.2 19 107-125 663-682 (934)
258 1iy2_A ATP-dependent metallopr 48.3 5.6 0.00019 40.8 1.3 18 110-127 77-95 (278)
259 3b60_A Lipid A export ATP-bind 48.3 4.2 0.00014 46.8 0.4 22 104-125 367-389 (582)
260 3trf_A Shikimate kinase, SK; a 48.3 5.7 0.0002 37.6 1.3 22 109-130 8-30 (185)
261 3gd7_A Fusion complex of cysti 48.2 4.7 0.00016 44.3 0.8 37 89-125 21-67 (390)
262 1oix_A RAS-related protein RAB 47.9 4.9 0.00017 38.5 0.8 18 109-126 32-50 (191)
263 2rcn_A Probable GTPase ENGC; Y 47.9 5.7 0.0002 43.2 1.4 28 99-126 208-236 (358)
264 3bk7_A ABC transporter ATP-bin 47.8 4.1 0.00014 47.4 0.2 20 105-124 116-136 (607)
265 3j16_B RLI1P; ribosome recycli 47.5 4.2 0.00014 47.4 0.2 18 105-122 102-119 (608)
266 3gp4_A Transcriptional regulat 47.3 43 0.0015 31.3 7.2 13 184-196 52-64 (142)
267 2yvu_A Probable adenylyl-sulfa 47.2 6 0.00021 37.7 1.3 24 107-130 14-38 (186)
268 2ycu_A Non muscle myosin 2C, a 47.2 7.8 0.00027 47.7 2.5 52 69-122 109-162 (995)
269 2iyv_A Shikimate kinase, SK; t 47.1 6.3 0.00021 37.4 1.4 22 109-130 5-27 (184)
270 2f9l_A RAB11B, member RAS onco 47.1 5.6 0.00019 38.2 1.0 16 111-126 10-26 (199)
271 1y63_A LMAJ004144AAA protein; 46.8 6.3 0.00022 37.7 1.4 23 108-130 12-36 (184)
272 2rhm_A Putative kinase; P-loop 46.8 5.9 0.0002 37.6 1.1 23 108-130 7-30 (193)
273 1tev_A UMP-CMP kinase; ploop, 46.7 6.2 0.00021 37.3 1.3 23 108-130 5-28 (196)
274 2qt1_A Nicotinamide riboside k 46.2 5.3 0.00018 38.8 0.7 22 108-129 23-45 (207)
275 2vli_A Antibiotic resistance p 45.8 6.6 0.00023 37.0 1.3 24 108-131 7-31 (183)
276 1gvn_B Zeta; postsegregational 45.5 7 0.00024 40.7 1.6 23 107-129 34-57 (287)
277 3ake_A Cytidylate kinase; CMP 45.5 6.8 0.00023 37.7 1.4 23 108-130 4-27 (208)
278 3thx_B DNA mismatch repair pro 44.9 3.5 0.00012 50.3 -1.0 19 107-125 674-693 (918)
279 3bos_A Putative DNA replicatio 44.5 7 0.00024 38.1 1.3 24 107-130 53-77 (242)
280 3bk7_A ABC transporter ATP-bin 44.4 5.2 0.00018 46.6 0.3 37 90-126 360-403 (607)
281 3iij_A Coilin-interacting nucl 44.2 7.2 0.00025 36.9 1.3 23 108-130 13-36 (180)
282 1kht_A Adenylate kinase; phosp 44.0 7.2 0.00025 36.8 1.3 23 108-130 5-28 (192)
283 2ke4_A CDC42-interacting prote 44.0 1.7E+02 0.0057 25.8 10.8 67 522-588 20-91 (98)
284 1yqt_A RNAse L inhibitor; ATP- 44.0 5.3 0.00018 45.7 0.3 22 105-126 311-333 (538)
285 2o8b_B DNA mismatch repair pro 43.7 5.2 0.00018 49.4 0.2 19 107-125 790-809 (1022)
286 1lv7_A FTSH; alpha/beta domain 43.4 7.4 0.00025 39.1 1.3 21 110-130 49-70 (257)
287 3a7o_A Autophagy protein 16; c 43.3 1.4E+02 0.0049 24.8 9.2 27 479-505 46-72 (75)
288 1pui_A ENGB, probable GTP-bind 43.2 5.3 0.00018 38.4 0.2 37 89-125 5-46 (210)
289 1g8x_A Myosin II heavy chain f 43.1 6.1 0.00021 48.7 0.7 52 69-122 135-188 (1010)
290 2c95_A Adenylate kinase 1; tra 43.1 7.1 0.00024 37.1 1.1 24 108-131 11-35 (196)
291 3mov_A Lamin-B1; LMNB1, B-type 43.1 1.3E+02 0.0043 26.4 9.0 31 468-498 40-70 (95)
292 3bas_A Myosin heavy chain, str 43.0 1.6E+02 0.0055 25.3 12.1 12 470-481 19-30 (89)
293 2xzr_A Immunoglobulin-binding 42.9 1.7E+02 0.006 25.7 12.5 86 213-298 19-104 (114)
294 2dr3_A UPF0273 protein PH0284; 42.8 5.4 0.00019 39.3 0.2 16 107-122 24-39 (247)
295 2dq0_A Seryl-tRNA synthetase; 42.3 1.8E+02 0.0063 32.3 12.6 34 310-343 31-64 (455)
296 1go4_E MAD1 (mitotic arrest de 42.3 1.3E+02 0.0044 26.8 8.9 33 472-504 12-44 (100)
297 2og2_A Putative signal recogni 42.2 7.6 0.00026 42.2 1.2 21 107-127 158-178 (359)
298 1sxj_E Activator 1 40 kDa subu 42.1 7.1 0.00024 41.1 1.0 19 109-127 39-58 (354)
299 1e6c_A Shikimate kinase; phosp 42.1 8.4 0.00029 35.9 1.4 23 108-130 4-27 (173)
300 2y3a_B Phosphatidylinositol 3- 42.0 3.3E+02 0.011 28.6 14.2 47 469-515 29-75 (302)
301 1nlf_A Regulatory protein REPA 41.8 7.5 0.00026 39.9 1.1 21 106-126 30-51 (279)
302 3qf4_A ABC transporter, ATP-bi 41.6 5.6 0.00019 45.9 0.1 22 104-125 367-389 (587)
303 3r20_A Cytidylate kinase; stru 41.6 8.4 0.00029 39.3 1.4 23 108-130 11-34 (233)
304 2oap_1 GSPE-2, type II secreti 41.5 6.6 0.00023 44.7 0.6 22 106-127 260-282 (511)
305 1svm_A Large T antigen; AAA+ f 41.3 8.1 0.00028 42.2 1.3 23 107-129 170-193 (377)
306 2no2_A HIP-I, huntingtin-inter 41.1 2E+02 0.0067 25.7 16.5 6 497-502 33-38 (107)
307 1tf7_A KAIC; homohexamer, hexa 41.1 6 0.0002 44.9 0.2 21 105-125 38-59 (525)
308 3ux8_A Excinuclease ABC, A sub 40.9 5.2 0.00018 46.8 -0.3 23 104-126 346-369 (670)
309 2xv5_A Lamin-A/C; structural p 40.8 1.1E+02 0.0038 25.6 7.9 19 570-588 44-62 (74)
310 2iw3_A Elongation factor 3A; a 40.7 7.6 0.00026 47.7 1.0 22 105-126 460-482 (986)
311 1cr0_A DNA primase/helicase; R 40.7 8 0.00027 39.9 1.1 22 105-126 34-56 (296)
312 3fb4_A Adenylate kinase; psych 40.6 8.8 0.0003 37.3 1.3 20 111-130 5-25 (216)
313 1zuh_A Shikimate kinase; alpha 40.1 7.6 0.00026 36.2 0.7 25 107-131 8-33 (168)
314 2xnx_M M protein, M1-BC1; cell 39.9 1.2E+02 0.004 28.7 8.7 41 308-348 71-111 (146)
315 1tq4_A IIGP1, interferon-induc 39.1 12 0.0004 41.5 2.2 19 108-126 71-90 (413)
316 2f1r_A Molybdopterin-guanine d 39.1 5 0.00017 38.8 -0.7 23 108-130 4-27 (171)
317 3m91_A Proteasome-associated A 38.8 1.1E+02 0.0039 23.8 7.1 35 515-549 14-48 (51)
318 1fnn_A CDC6P, cell division co 38.8 12 0.00041 39.5 2.2 20 108-127 46-66 (389)
319 1pzn_A RAD51, DNA repair and r 38.6 6.9 0.00024 42.1 0.2 15 108-122 133-147 (349)
320 1vht_A Dephospho-COA kinase; s 38.3 10 0.00035 37.1 1.3 23 108-130 6-28 (218)
321 3ozx_A RNAse L inhibitor; ATP 38.2 7.1 0.00024 44.7 0.2 22 104-125 292-314 (538)
322 2w58_A DNAI, primosome compone 38.0 10 0.00035 36.4 1.3 23 107-129 55-78 (202)
323 1qf9_A UMP/CMP kinase, protein 37.8 9.5 0.00033 35.9 1.0 23 108-130 8-31 (194)
324 1sxj_C Activator 1 40 kDa subu 37.7 10 0.00035 40.0 1.3 22 109-130 49-71 (340)
325 3qne_A Seryl-tRNA synthetase, 37.7 2.6E+02 0.0091 31.4 12.9 33 311-343 34-66 (485)
326 3dl0_A Adenylate kinase; phosp 37.5 10 0.00035 36.9 1.2 20 111-130 5-25 (216)
327 3edu_A Beta-I spectrin, spectr 37.2 2.9E+02 0.01 26.6 20.9 34 556-589 184-217 (218)
328 1nks_A Adenylate kinase; therm 36.8 10 0.00035 35.7 1.0 22 109-130 4-26 (194)
329 1m7g_A Adenylylsulfate kinase; 36.8 11 0.00037 36.8 1.3 24 107-130 26-50 (211)
330 3l4q_C Phosphatidylinositol 3- 36.8 3E+02 0.01 26.6 15.4 34 311-344 90-123 (170)
331 2pt5_A Shikimate kinase, SK; a 36.5 11 0.00039 34.8 1.3 21 110-130 4-25 (168)
332 3lay_A Zinc resistance-associa 36.3 1.9E+02 0.0066 28.0 10.1 69 209-298 66-134 (175)
333 2pms_C Pneumococcal surface pr 36.2 2.6E+02 0.0088 25.8 10.2 25 280-304 64-88 (125)
334 3cr8_A Sulfate adenylyltranfer 36.1 7.8 0.00027 44.6 0.1 24 106-129 369-393 (552)
335 2k48_A Nucleoprotein; viral pr 36.0 2.4E+02 0.0081 25.2 9.9 33 387-419 35-67 (107)
336 2qag_C Septin-7; cell cycle, c 35.9 9.3 0.00032 42.4 0.7 15 110-124 35-50 (418)
337 2plr_A DTMP kinase, probable t 35.8 12 0.0004 35.9 1.3 24 108-131 6-30 (213)
338 2w83_C C-JUN-amino-terminal ki 35.8 2E+02 0.0068 24.3 10.1 17 489-505 26-42 (77)
339 1ukz_A Uridylate kinase; trans 35.5 12 0.0004 36.1 1.2 23 108-130 17-40 (203)
340 2k48_A Nucleoprotein; viral pr 35.5 2.4E+02 0.0083 25.2 9.6 6 477-482 40-45 (107)
341 2z0h_A DTMP kinase, thymidylat 35.0 12 0.00042 35.4 1.3 20 110-129 4-24 (197)
342 1t9h_A YLOQ, probable GTPase E 34.9 3 0.0001 44.5 -3.4 28 99-126 166-194 (307)
343 3j16_B RLI1P; ribosome recycli 34.6 9.1 0.00031 44.5 0.4 20 107-126 379-399 (608)
344 2obl_A ESCN; ATPase, hydrolase 34.4 8.6 0.0003 41.4 0.1 27 101-127 66-93 (347)
345 2bwj_A Adenylate kinase 5; pho 34.4 12 0.00041 35.6 1.1 24 107-130 13-37 (199)
346 2xb4_A Adenylate kinase; ATP-b 34.3 13 0.00044 36.8 1.4 21 110-130 4-25 (223)
347 2px0_A Flagellar biosynthesis 34.2 12 0.0004 39.4 1.1 19 106-124 105-123 (296)
348 4emc_A Monopolin complex subun 34.1 1.9E+02 0.0064 28.5 9.4 10 760-769 168-177 (190)
349 1zak_A Adenylate kinase; ATP:A 34.0 12 0.00041 36.7 1.1 22 109-130 8-30 (222)
350 3edv_A Spectrin beta chain, br 33.9 3.9E+02 0.013 27.1 36.4 64 280-343 9-73 (323)
351 2dq0_A Seryl-tRNA synthetase; 33.7 1.6E+02 0.0054 32.9 10.2 38 311-348 70-107 (455)
352 1gk6_A Vimentin; intermediate 33.7 1.2E+02 0.004 24.1 6.7 14 570-583 39-52 (59)
353 1jbk_A CLPB protein; beta barr 33.6 13 0.00045 34.3 1.2 24 107-130 44-68 (195)
354 3etw_A Adhesin A; antiparallel 33.5 2.8E+02 0.0096 25.3 13.9 32 474-505 29-60 (119)
355 2xs1_A Programmed cell death 6 33.5 6.4E+02 0.022 29.4 25.5 44 223-266 436-479 (704)
356 3efg_A Protein SLYX homolog; x 33.3 78 0.0027 26.8 5.9 50 289-343 12-61 (78)
357 2yhs_A FTSY, cell division pro 33.3 13 0.00044 42.3 1.3 16 107-122 294-309 (503)
358 1np6_A Molybdopterin-guanine d 33.3 13 0.00046 35.9 1.2 22 108-129 8-30 (174)
359 2jaq_A Deoxyguanosine kinase; 33.3 13 0.00045 35.3 1.2 22 110-131 4-26 (205)
360 3cf0_A Transitional endoplasmi 32.9 14 0.00047 38.4 1.4 21 109-129 52-73 (301)
361 4fcw_A Chaperone protein CLPB; 32.6 15 0.0005 37.7 1.5 23 108-130 49-72 (311)
362 2qby_A CDC6 homolog 1, cell di 32.6 11 0.00036 39.7 0.4 24 104-127 43-67 (386)
363 2ygr_A Uvrabc system protein A 32.3 11 0.00037 46.4 0.5 23 105-127 667-690 (993)
364 1e4v_A Adenylate kinase; trans 32.2 13 0.00046 36.2 1.1 21 110-130 4-25 (214)
365 1zd8_A GTP:AMP phosphotransfer 32.2 13 0.00044 36.7 1.0 23 108-130 9-32 (227)
366 2qnr_A Septin-2, protein NEDD5 32.0 11 0.00038 39.5 0.5 23 110-132 22-44 (301)
367 2h92_A Cytidylate kinase; ross 32.0 15 0.00051 35.7 1.4 23 108-130 5-28 (219)
368 1njg_A DNA polymerase III subu 31.9 15 0.0005 35.2 1.3 23 108-130 47-70 (250)
369 2cdn_A Adenylate kinase; phosp 31.9 15 0.00052 35.3 1.4 23 108-130 22-45 (201)
370 3n70_A Transport activator; si 31.9 13 0.00044 34.1 0.9 19 109-127 27-46 (145)
371 3exa_A TRNA delta(2)-isopenten 31.8 14 0.00049 39.6 1.2 23 108-130 5-28 (322)
372 3pih_A Uvrabc system protein A 31.4 13 0.00045 45.3 1.0 19 111-129 615-635 (916)
373 4dzn_A Coiled-coil peptide CC- 31.3 56 0.0019 22.4 3.6 27 71-100 2-28 (33)
374 3d3q_A TRNA delta(2)-isopenten 31.2 15 0.00052 39.6 1.4 23 108-130 9-32 (340)
375 1uf9_A TT1252 protein; P-loop, 31.1 11 0.00037 36.0 0.1 20 108-127 10-29 (203)
376 2r6f_A Excinuclease ABC subuni 31.1 12 0.0004 45.9 0.5 23 105-127 649-672 (972)
377 2ga8_A Hypothetical 39.9 kDa p 31.1 21 0.00071 38.8 2.4 23 109-131 27-50 (359)
378 4eaq_A DTMP kinase, thymidylat 31.1 15 0.00052 36.7 1.3 24 107-130 27-51 (229)
379 2wt7_A Proto-oncogene protein 31.0 96 0.0033 24.9 5.8 35 311-345 24-58 (63)
380 3b9p_A CG5977-PA, isoform A; A 30.7 16 0.00054 37.4 1.4 24 107-130 55-79 (297)
381 2iw3_A Elongation factor 3A; a 30.7 9.5 0.00033 46.8 -0.4 37 89-125 673-719 (986)
382 1xjc_A MOBB protein homolog; s 30.6 16 0.00054 35.4 1.3 23 108-130 6-29 (169)
383 2wjg_A FEOB, ferrous iron tran 30.6 15 0.0005 34.4 1.0 17 110-126 11-28 (188)
384 1aky_A Adenylate kinase; ATP:A 30.5 16 0.00054 35.8 1.3 22 109-130 7-29 (220)
385 1t3j_A Mitofusin 1; coiled coi 30.5 2.2E+02 0.0076 25.1 8.4 36 499-534 53-88 (96)
386 1m1j_C Fibrinogen gamma chain; 30.5 4.9E+02 0.017 28.6 13.2 11 490-500 52-62 (409)
387 2www_A Methylmalonic aciduria 30.5 15 0.00053 39.3 1.3 22 108-129 76-98 (349)
388 2pbr_A DTMP kinase, thymidylat 30.2 17 0.00057 34.2 1.4 21 109-129 3-24 (195)
389 3a4m_A L-seryl-tRNA(SEC) kinas 30.2 16 0.00055 37.1 1.3 20 108-127 6-26 (260)
390 1ses_A Seryl-tRNA synthetase; 30.2 3.4E+02 0.012 29.7 12.1 39 310-348 64-102 (421)
391 1sxj_D Activator 1 41 kDa subu 30.2 16 0.00055 38.1 1.3 22 109-130 61-83 (353)
392 3crm_A TRNA delta(2)-isopenten 30.1 15 0.00052 39.3 1.1 23 108-130 7-30 (323)
393 2wji_A Ferrous iron transport 30.0 13 0.00043 34.4 0.4 16 110-125 7-23 (165)
394 3ghg_B Fibrinogen beta chain; 29.9 5.6E+02 0.019 28.6 13.5 14 439-452 94-107 (461)
395 1vma_A Cell division protein F 29.8 16 0.00055 38.6 1.3 18 106-123 104-121 (306)
396 3ghg_C Fibrinogen gamma chain; 29.6 6E+02 0.021 27.9 15.0 30 222-251 32-61 (411)
397 4dk0_A Putative MACA; alpha-ha 29.3 1.1E+02 0.0038 32.2 7.9 15 199-215 53-67 (369)
398 2r62_A Cell division protease 29.3 18 0.00063 36.3 1.6 22 109-130 47-69 (268)
399 1j1d_C Troponin I, TNI; THIN f 28.9 3.6E+02 0.012 25.1 10.4 11 210-220 10-20 (133)
400 1zu4_A FTSY; GTPase, signal re 28.8 18 0.00061 38.5 1.4 18 106-123 105-122 (320)
401 1ci6_A Transcription factor AT 28.7 1.1E+02 0.0038 24.6 5.8 35 311-345 24-58 (63)
402 2xdj_A Uncharacterized protein 28.4 2.8E+02 0.0095 23.7 10.4 27 472-498 27-53 (83)
403 2yy0_A C-MYC-binding protein; 28.4 82 0.0028 24.7 4.8 32 310-341 19-50 (53)
404 2ke4_A CDC42-interacting prote 28.3 2.4E+02 0.008 24.8 8.3 27 208-234 8-35 (98)
405 2dpy_A FLII, flagellum-specifi 28.3 13 0.00043 41.5 0.1 27 101-127 152-179 (438)
406 3foz_A TRNA delta(2)-isopenten 28.2 17 0.00059 38.8 1.1 23 108-130 12-35 (316)
407 2wwf_A Thymidilate kinase, put 28.1 17 0.0006 34.8 1.1 24 108-131 12-36 (212)
408 3qne_A Seryl-tRNA synthetase, 28.0 2E+02 0.0067 32.5 9.7 9 728-736 374-382 (485)
409 2avr_X Adhesion A; antiparalle 27.9 3.5E+02 0.012 24.7 13.7 33 470-505 69-101 (119)
410 1odf_A YGR205W, hypothetical 3 27.7 19 0.00064 37.7 1.3 26 106-131 31-57 (290)
411 1t2k_D Cyclic-AMP-dependent tr 27.6 1.2E+02 0.004 24.1 5.7 35 311-345 23-57 (61)
412 1wle_A Seryl-tRNA synthetase; 27.5 3.9E+02 0.013 30.1 12.2 8 729-736 410-417 (501)
413 3h4m_A Proteasome-activating n 27.5 20 0.00068 36.3 1.4 21 109-129 54-75 (285)
414 2dq3_A Seryl-tRNA synthetase; 27.5 1.7E+02 0.006 32.1 9.2 43 727-769 356-402 (425)
415 1d7m_A Cortexillin I; coiled-c 27.4 3.1E+02 0.01 23.8 16.5 33 473-505 26-58 (101)
416 1ls1_A Signal recognition part 27.3 19 0.00064 37.7 1.2 22 106-127 98-119 (295)
417 2p67_A LAO/AO transport system 27.2 18 0.0006 38.6 1.0 24 106-129 56-80 (341)
418 1uj2_A Uridine-cytidine kinase 27.2 20 0.0007 36.0 1.4 24 108-131 24-48 (252)
419 3etw_A Adhesin A; antiparallel 27.1 3.6E+02 0.012 24.6 13.5 32 471-505 70-101 (119)
420 1j8m_F SRP54, signal recogniti 27.0 37 0.0013 35.6 3.4 21 107-127 99-120 (297)
421 1wle_A Seryl-tRNA synthetase; 26.7 4.3E+02 0.015 29.7 12.4 19 525-543 124-142 (501)
422 1tf7_A KAIC; homohexamer, hexa 26.6 18 0.00062 40.8 1.0 38 89-126 259-302 (525)
423 3t15_A Ribulose bisphosphate c 26.5 19 0.00066 37.3 1.1 37 94-130 24-61 (293)
424 3tlx_A Adenylate kinase 2; str 26.4 20 0.0007 36.0 1.3 23 108-130 31-54 (243)
425 1cun_A Protein (alpha spectrin 26.4 4.1E+02 0.014 25.0 25.9 64 522-585 144-211 (213)
426 2vf7_A UVRA2, excinuclease ABC 26.4 12 0.0004 45.3 -0.6 19 111-129 528-547 (842)
427 1gtv_A TMK, thymidylate kinase 26.3 11 0.00037 36.4 -0.8 22 109-130 3-25 (214)
428 1m1j_A Fibrinogen alpha subuni 26.3 7.1E+02 0.024 27.7 16.1 11 575-585 179-189 (491)
429 2r2a_A Uncharacterized protein 26.3 29 0.001 34.1 2.4 15 108-122 7-21 (199)
430 1nn5_A Similar to deoxythymidy 26.2 20 0.00067 34.5 1.1 23 108-130 11-34 (215)
431 2chg_A Replication factor C sm 26.1 22 0.00074 33.7 1.3 21 109-129 41-62 (226)
432 1l8q_A Chromosomal replication 26.0 21 0.00072 37.1 1.3 22 108-129 39-61 (324)
433 1u5p_A Spectrin alpha chain, b 25.9 4.3E+02 0.015 25.1 25.5 65 522-586 147-215 (216)
434 2lf0_A Uncharacterized protein 25.8 2.2E+02 0.0076 25.9 7.7 51 282-332 8-58 (123)
435 2v54_A DTMP kinase, thymidylat 25.7 22 0.00076 33.9 1.3 22 108-129 6-28 (204)
436 2p65_A Hypothetical protein PF 25.7 18 0.00062 33.4 0.7 22 108-129 45-67 (187)
437 4e61_A Protein BIM1; EB1-like 25.6 3.6E+02 0.012 24.1 9.5 42 515-556 9-50 (106)
438 4etp_A Kinesin-like protein KA 25.5 1.4E+02 0.005 32.6 8.0 8 620-627 124-131 (403)
439 1jnm_A Proto-oncogene C-JUN; B 25.4 1E+02 0.0035 24.6 5.0 35 311-345 23-57 (62)
440 2qz4_A Paraplegin; AAA+, SPG7, 25.2 23 0.00078 35.2 1.3 20 110-129 43-63 (262)
441 3g5u_A MCG1178, multidrug resi 24.7 17 0.00059 45.9 0.4 22 104-125 414-436 (1284)
442 1ltq_A Polynucleotide kinase; 24.6 18 0.0006 37.2 0.4 8 729-736 275-282 (301)
443 3zvl_A Bifunctional polynucleo 24.5 22 0.00075 39.0 1.1 23 107-129 259-282 (416)
444 1a7j_A Phosphoribulokinase; tr 24.2 25 0.00084 36.7 1.4 23 108-130 7-30 (290)
445 3m6a_A ATP-dependent protease 24.1 24 0.00082 40.2 1.4 24 107-130 109-133 (543)
446 2gj8_A MNME, tRNA modification 24.0 21 0.00072 33.3 0.8 17 110-126 8-25 (172)
447 3k1j_A LON protease, ATP-depen 23.7 24 0.00082 40.7 1.3 24 107-130 61-85 (604)
448 3lxx_A GTPase IMAP family memb 23.5 23 0.00079 35.1 1.0 17 110-126 33-50 (239)
449 2zej_A Dardarin, leucine-rich 23.4 19 0.00067 33.8 0.4 14 111-124 7-21 (184)
450 3kl4_A SRP54, signal recogniti 23.4 24 0.00084 39.2 1.3 21 106-126 97-118 (433)
451 3efg_A Protein SLYX homolog; x 23.3 2.5E+02 0.0087 23.5 7.3 35 471-505 13-47 (78)
452 3co5_A Putative two-component 23.2 17 0.00059 33.2 -0.0 18 109-126 30-48 (143)
453 2grj_A Dephospho-COA kinase; T 23.1 26 0.0009 34.2 1.3 18 108-125 14-32 (192)
454 3ghg_B Fibrinogen beta chain; 23.0 4.7E+02 0.016 29.2 11.3 35 221-255 88-122 (461)
455 1ofh_A ATP-dependent HSL prote 22.8 27 0.00091 35.5 1.3 22 109-130 53-75 (310)
456 1ses_A Seryl-tRNA synthetase; 22.8 4E+02 0.014 29.2 11.0 30 319-348 30-59 (421)
457 3g5u_A MCG1178, multidrug resi 22.6 22 0.00074 45.0 0.7 18 107-124 1060-1078(1284)
458 3be4_A Adenylate kinase; malar 22.5 25 0.00087 34.3 1.1 22 109-130 8-30 (217)
459 3lda_A DNA repair protein RAD5 22.4 19 0.00066 39.5 0.2 14 109-122 181-194 (400)
460 1kd8_A GABH AIV, GCN4 acid bas 22.2 1.3E+02 0.0044 21.7 4.3 29 384-412 5-33 (36)
461 2pnv_A Small conductance calci 22.1 1.2E+02 0.0042 22.8 4.4 31 311-341 10-40 (43)
462 1f5n_A Interferon-induced guan 22.0 8.5E+02 0.029 27.9 13.9 99 382-480 482-582 (592)
463 3trt_A Vimentin; cytoskeleton, 21.8 3.3E+02 0.011 22.2 10.3 11 427-437 10-20 (77)
464 3syl_A Protein CBBX; photosynt 21.8 26 0.0009 35.8 1.1 21 110-130 71-92 (309)
465 3sja_C Golgi to ER traffic pro 21.8 2.8E+02 0.0095 22.7 6.9 50 282-331 4-53 (65)
466 2dhr_A FTSH; AAA+ protein, hex 21.7 29 0.00098 39.3 1.4 20 110-129 68-88 (499)
467 1tue_A Replication protein E1; 21.7 25 0.00084 35.5 0.7 21 110-130 62-83 (212)
468 1j1e_C Troponin I, TNI; THIN f 21.7 5.7E+02 0.019 24.9 10.4 11 210-220 10-20 (180)
469 4f4c_A Multidrug resistance pr 21.6 22 0.00075 45.1 0.5 16 111-126 449-465 (1321)
470 2qgz_A Helicase loader, putati 21.5 29 0.00099 36.4 1.3 24 107-130 153-177 (308)
471 3hr8_A Protein RECA; alpha and 21.5 27 0.00092 37.8 1.1 20 107-126 62-82 (356)
472 2zr9_A Protein RECA, recombina 21.3 21 0.00072 38.3 0.2 17 106-122 61-77 (349)
473 3k29_A Putative uncharacterize 20.4 5.8E+02 0.02 24.6 21.9 40 292-334 56-95 (169)
474 2z4s_A Chromosomal replication 20.2 32 0.0011 38.0 1.3 22 108-129 132-154 (440)
475 3eph_A TRNA isopentenyltransfe 20.2 30 0.001 38.2 1.1 20 111-130 7-27 (409)
476 2qtf_A Protein HFLX, GTP-bindi 20.1 46 0.0016 35.9 2.6 63 64-126 133-200 (364)
No 1
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.48 E-value=1.5e-14 Score=141.89 Aligned_cols=126 Identities=19% Similarity=0.163 Sum_probs=91.9
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCCC--c--------------------ccccccc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSPS--R--------------------QHKLTAQ 164 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p~--r--------------------~~k~~~~ 164 (784)
+.-++|||||||||| |||.++|+..+.+..|+.++.++|+.|.....|. . .+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~i~r~~~ 107 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVY 107 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSSSSEEEEEEEEC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccCCcEEEEEEEEE
Confidence 667899999999999 9999999999999999999999999875322210 0 1111111
Q ss_pred cCCCCccceeccC--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHH
Q 003944 165 VKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRM 235 (784)
Q Consensus 165 ~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ 235 (784)
.++. + .|++|| ++..++.+++...|+.|+.++++.||++++|+.|+|.+|+.++ +|...|+.+++++..
T Consensus 108 ~~~~-~-~~~i~g~~~~~~~~~~~l~~~~l~~~~~~~~~qg~~~~l~~~~~~~r~~~ld~~~g~~~~~~~~~~~~~ 181 (182)
T 3kta_A 108 PDGR-S-SYWLNGRRATRSEILDILTAAMISPDGYNIVLQGDITKFIKMSPLERRLLIDDISGIAEYDSKKEKALE 181 (182)
T ss_dssp TTSC-E-EEEETTEEECHHHHHHHHHHTTCCTTCTTEECTTCTTHHHHSCHHHHHHHHHHHHTC------------
T ss_pred eCCc-E-EEEECCeEcCHHHHHHHHHHcCCCCCCCEEEEcccHHHHHhCCHHHHHHHHHHHHChHHHHHHHHHHhc
Confidence 1233 3 588899 8899999999999999999999999999999999999999999 666677766665543
No 2
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.33 E-value=3.1e-13 Score=151.35 Aligned_cols=134 Identities=14% Similarity=0.106 Sum_probs=77.0
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCC--------------CCC------------c-
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDL--------------SPS------------R- 157 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~--------------~p~------------r- 157 (784)
..+.-+.|||||||||| |||.|+++..+ ..+|+.++.|+|+.|.... .|. +
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~~~~-~~~R~~~~~~lI~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 104 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLGVRS-NHLRSNILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKL 104 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC----------CGGGSCCC-------------------CCEEEEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhcccc-ccchhhhHHHHHhcCCccceeeEEecccccccCCcccccceeeeccCCcE
Confidence 35777999999999999 99999998765 5789999999999986210 011 1
Q ss_pred -ccccccccCCCCccceeccC--CccchhhchhhhccCCccccc-cccccchhHHhhhcHHHhHHHH---HHHHHHHHHH
Q 003944 158 -QHKLTAQVKNRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQS-SKMQGKEKELADLLEEKNRSLA---AERAAYESQT 230 (784)
Q Consensus 158 -~~k~~~~~~~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn-~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei 230 (784)
.+.+....++. + .|++|| |+..++..++...+|.....+ |++||++..|+.|+|.+||.++ .|...|+...
T Consensus 105 ~~i~r~~~~~~~-~-~~~ing~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~~~~l~~~~p~eRr~~ld~~~g~~~~~~~~ 182 (430)
T 1w1w_A 105 VELMRIISRNGD-T-SYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEY 182 (430)
T ss_dssp EEEEEEEETTSC-E-EEEETTEEECHHHHHHHHHHTTCCTTTCTTEECTTCTTHHHHSCHHHHHHTC-------------
T ss_pred EEEEEEEecCCc-e-EEEECCEEccHHHHHHHHHhCCcCCCCcceeeehHhHHHHHhCCHHHHHHHHHHHhCchhHHHHH
Confidence 11111101122 2 588999 888899999888888766555 8899999999999999999999 6667777777
Q ss_pred HHHHHHHHHHHH
Q 003944 231 RQLRMELEQQRN 242 (784)
Q Consensus 231 ~~l~~ELe~~~e 242 (784)
.++...++++..
T Consensus 183 ~~~~~~~~~~~~ 194 (430)
T 1w1w_A 183 EELKEKIEKLSK 194 (430)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 777766666543
No 3
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.32 E-value=4.2e-13 Score=144.86 Aligned_cols=109 Identities=22% Similarity=0.148 Sum_probs=73.5
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCCCCC-------------------cccccccccC
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSPS-------------------RQHKLTAQVK 166 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~~p~-------------------r~~k~~~~~~ 166 (784)
.+.-++|||||||||| |||.|+||.++.+..|+.+..|+|+.|....++. |+++..
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r~~~~~---- 100 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELKRT---- 100 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEEEEETT----
T ss_pred CcEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEEEEEcC----
Confidence 3677999999999999 9999999998889999999999999887532221 121111
Q ss_pred CCCccceeccC--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHHH
Q 003944 167 NRHAGHQLQNG--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLAA 221 (784)
Q Consensus 167 ~~~s~~~~~Ng--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~a 221 (784)
+ ++.||+|| ++..++.+.+...|+.|+.|.+|.||++.+++.++|.+||.++.
T Consensus 101 ~--~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld 155 (322)
T 1e69_A 101 G--ENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESS 155 (322)
T ss_dssp S--CEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------
T ss_pred C--ceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHH
Confidence 2 23688999 89999999999999999999999999999999999999998874
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.29 E-value=1.2e-07 Score=96.89 Aligned_cols=54 Identities=6% Similarity=0.089 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 537 DQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 537 k~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~ 590 (784)
...+..+...+..+...+..+...+..+...+..+...+..+...++....+|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 282 (284)
T 1c1g_A 229 SDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333333444444444444444555555555555555444
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.26 E-value=3.2e-07 Score=93.55 Aligned_cols=6 Identities=17% Similarity=0.335 Sum_probs=2.2
Q ss_pred HHHHHH
Q 003944 571 LEEDNA 576 (784)
Q Consensus 571 L~~eie 576 (784)
+...+.
T Consensus 270 ~~~~~~ 275 (284)
T 1c1g_A 270 ISEELD 275 (284)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.19 E-value=2e-11 Score=152.78 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=18.5
Q ss_pred hhhhHhhhhhhccCCCCCcchh-hHHH
Q 003944 101 LKEKEEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 101 ~~~~~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
|....=+.+|-..||...+.+. |.-+
T Consensus 673 l~~t~phfvRCIkPN~~k~p~~fd~~~ 699 (1184)
T 1i84_S 673 LRNTNPNFVRCIIPNHEKRAGKLDAHL 699 (1184)
T ss_dssp HTTSEEEECCEECCCSSCCSSCCCHHH
T ss_pred HHhcCCCceeeeCCCCcCCCCcccHHH
Confidence 3344556678888999999888 7543
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.01 E-value=4.1e-10 Score=140.92 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhh
Q 003944 227 ESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKM 270 (784)
Q Consensus 227 e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~ 270 (784)
..++..+..+|+..+.++..++..+.+.+.++..|+.++..+..
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~ 899 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666655555555555555555444444
No 8
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.92 E-value=1.8e-10 Score=116.37 Aligned_cols=140 Identities=15% Similarity=0.033 Sum_probs=88.9
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCC----------CCC---Ccccccccc-cCCCCcc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGD----------LSP---SRQHKLTAQ-VKNRHAG 171 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~----------~~p---~r~~k~~~~-~~~~~s~ 171 (784)
.+.-++|||||||||| |||.|||+.. ...|..+..|+|+.|... ..+ .|++..... ..+.+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g~--~~~r~~~~~~~i~~~~~~~~v~l~f~~~~~~~~i~R~~~~~~~~~~~~~~- 100 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYWP--LRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAM- 100 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT--SCCTTCCHHHHHTSCSSCEEEEEEEEETTEEEEEEEEEECSSSCEEEEEE-
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcCC--cccccccchhhhccCCCcEEEEEEEEECCEEEEEEEEEEcCCCCCccceE-
Confidence 4667899999999999 9999999983 345666677888876431 000 033332200 011122
Q ss_pred ceeccC--C-----ccchhhchhhhccCCccccc---cccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHHHHH
Q 003944 172 HQLQNG--F-----SKQDGVSNGSHALQTEVVQS---SKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRMELE 238 (784)
Q Consensus 172 ~~~~Ng--~-----~~~~~~~~l~~~~i~p~gyn---~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ELe 238 (784)
+|+.|| + +..|+.+.+... +..+-|. ++-||++..|+.+. .+|+.++ .|...|+...+.++..+.
T Consensus 101 ~~~~~g~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~l~Qg~~~~~l~~~-~er~~~l~~i~g~~~~~~~~~~l~~~~~ 178 (203)
T 3qks_A 101 KRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQGQIDAILESD-EAREKVVREVLNLDKFETAYKKLSELKK 178 (203)
T ss_dssp EEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHTTEECTTHHHHHHHCH-HHHHHHHHHHTCCCTTHHHHHHHHHHHH
T ss_pred EEEcCCceeeeccCChHHHHHHHHHH-cCHHHhhEEEEEcCCcHHHHHhCc-HHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 466777 2 123777766665 4333332 56699999999998 8888888 556667666666666666
Q ss_pred HHHHhHHHHHHHH
Q 003944 239 QQRNKFADVQLKL 251 (784)
Q Consensus 239 ~~~ekle~l~~~L 251 (784)
..+.+++.++..+
T Consensus 179 ~~~~~~~~l~~~~ 191 (203)
T 3qks_A 179 TINNRIKEYRDIL 191 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6665555544433
No 9
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.90 E-value=2.1e-09 Score=118.15 Aligned_cols=139 Identities=13% Similarity=0.086 Sum_probs=89.1
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCC--------CCCCC-cccccccccCCCCccceecc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSG--------DLSPS-RQHKLTAQVKNRHAGHQLQN 176 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~--------~~~p~-r~~k~~~~~~~~~s~~~~~N 176 (784)
.+.=++|||||||||| |||.|||... .|+.+.+|+|..|.. ..... -++.+.. .+|.....+|+|
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~l~g~----~r~~~~~~~ir~g~~~~~V~~~f~~~~~~~~i~r~~-~~g~~~~~~~~n 100 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFALFGA----GSNFNYDTIITKGKKSVYVELDFEVNGNNYKIIREY-DSGRGGAKLYKN 100 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHCC----C-CCCTTTTBCTTCSEEEEEEEEEETTEEEEEEEEE-ETTEEEEEEEET
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCC----CCccchHhhccCCCCcEEEEEEEEECCEEEEEEEEE-cCCCCceEEEEC
Confidence 4667899999999999 9999987765 456678889987754 00110 1122110 112211136789
Q ss_pred C--Ccc--chhhchhhh-ccCCccccc---cccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHhHH
Q 003944 177 G--FSK--QDGVSNGSH-ALQTEVVQS---SKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRMELEQQRNKFA 245 (784)
Q Consensus 177 g--~~~--~~~~~~l~~-~~i~p~gyn---~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ELe~~~ekle 245 (784)
| ++. .++...+.. +|+.++.|- ++-||++..++.+.|.+||.++ .+...|......+...+......++
T Consensus 101 g~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~~~~~Rr~~ld~~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (371)
T 3auy_A 101 GKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLE 180 (371)
T ss_dssp TEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeecccHHHHHHHHHHHhCcCHHHhCceeeecCccHHHHHhcCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 433 466666666 788877774 5668999999999999999999 3334455555555555555555444
Q ss_pred HHHHH
Q 003944 246 DVQLK 250 (784)
Q Consensus 246 ~l~~~ 250 (784)
.....
T Consensus 181 ~~~~~ 185 (371)
T 3auy_A 181 RIEGE 185 (371)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 10
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.82 E-value=8.2e-10 Score=106.33 Aligned_cols=97 Identities=15% Similarity=0.044 Sum_probs=66.0
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCC--------CCC-----cccccccccCCCCccc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDL--------SPS-----RQHKLTAQVKNRHAGH 172 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~--------~p~-----r~~k~~~~~~~~~s~~ 172 (784)
.+.-+.|||||||||| |||.|||+...+ .|..+..|+|+.|...- ... |+++.. +..+ +
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l~g~~~--~r~~~~~~~~~~~~~~~~v~~~f~~~~~~~~i~R~~~~~----~~~~-~ 96 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKG----YSSG-E 96 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHCSSC--CTTSSCCCSCSTTCCCEEEEEEEEETTEEEEEEEEECCC---------E
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCcc--cccCCHHHheecCCCcEEEEEEEEECCEEEEEEEEEcCC----CCce-E
Confidence 4667899999999999 999999965422 26667788998765310 000 333321 1122 4
Q ss_pred ee--cc--C--C-----cc-chhhchhhhccCCcccc---ccccccchhHHhhh
Q 003944 173 QL--QN--G--F-----SK-QDGVSNGSHALQTEVVQ---SSKMQGKEKELADL 211 (784)
Q Consensus 173 ~~--~N--g--~-----~~-~~~~~~l~~~~i~p~gy---n~vmqgd~t~~~~m 211 (784)
|| .| | + +. .|+.+.+... +.++.| .++.||++++|+.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~i~QG~~~~~l~~ 149 (149)
T 1f2t_A 97 IHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQGQIDAILES 149 (149)
T ss_dssp EEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHHTEECTTHHHHHTCC
T ss_pred EEEEeccCCCceEEcccCchHHHHHHHHHH-cCHHHhhheEEEcCcCHHHHhhC
Confidence 55 57 6 1 24 7888888886 888888 47889999999876
No 11
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.77 E-value=1e-07 Score=109.30 Aligned_cols=139 Identities=14% Similarity=0.073 Sum_probs=75.5
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCC-------C-CC---CCcccccccccCCCCccce
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSG-------D-LS---PSRQHKLTAQVKNRHAGHQ 173 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~-------~-~~---p~r~~k~~~~~~~~~s~~~ 173 (784)
..+.-|+|||||||||| |||.|+||..+ ..|+|..|.. - .. ..-.+++....+|+ + .|
T Consensus 60 ~g~n~i~G~NGaGKS~lleAl~~llg~r~--------~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~-~-~~ 129 (517)
T 4ad8_A 60 GGFCAFTGETGAGKSIIVDALGLLLGGRA--------NHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR-G-AA 129 (517)
T ss_dssp CSEEEEEESHHHHHHHHTHHHHHHTCSCC--------CGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC-C-EE
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcCCc--------HHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCC-c-EE
Confidence 45778999999999999 99999999743 2577766542 0 11 11111111112244 2 58
Q ss_pred eccC--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003944 174 LQNG--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA---AERAAYESQTRQLRMELEQQRNKFADVQ 248 (784)
Q Consensus 174 ~~Ng--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~---a~~a~~e~ei~~l~~ELe~~~ekle~l~ 248 (784)
|+|| ++.+++.+++.. ++.++-|++. +.-+.|..||.++ ++.. ..........+..+..++..+.
T Consensus 130 ~ing~~v~~~~l~~~~~~------li~i~~q~~~--~~l~~~~~rr~~LD~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 199 (517)
T 4ad8_A 130 RLSGEVVSVRELQEWAQG------RLTIHWQHSA--VSLLSPANQRGLLDRRVTKE--AQAYAAAHAAWREAVSRLERLQ 199 (517)
T ss_dssp ESSSSBCCHHHHHHHHTT------TEEEESGGGG--GTTTSHHHHHHHHHTSSHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCEECCHHHHHHHhhh------heEEeCCchH--HhcCCHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 877666555432 2234445444 5566888888888 2222 1333344444444444443333
Q ss_pred HHHHHHHHhhHhHHHH
Q 003944 249 LKLQEEQRLNESFQDE 264 (784)
Q Consensus 249 ~~LeE~~~~le~Lkee 264 (784)
....+....++.+...
T Consensus 200 ~~~~~~~~~l~~l~~q 215 (517)
T 4ad8_A 200 ASQRERARQIDLLAFQ 215 (517)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3333333333333333
No 12
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.09 E-value=6.9e-06 Score=90.14 Aligned_cols=96 Identities=20% Similarity=0.125 Sum_probs=66.3
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCCC-------CCCcccc--cccccCCCCccceeccC
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDL-------SPSRQHK--LTAQVKNRHAGHQLQNG 177 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~~-------~p~r~~k--~~~~~~~~~s~~~~~Ng 177 (784)
+.-+.|||||||||| +||.+++. .+ .|..+..|+|..|+..- ...+.++ .+...++. .+++||
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~~~---g~-~R~~~~~~lI~~g~~~~~V~~~~~~~~~~~~i~~~~~~~~~---~~~ing 100 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLALT---GQ-TDAPRIEQLIQAGETEAYVRADLQQGGSLSIQEVGLGRGRR---QLKVDG 100 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH---SC-CCCSSGGGGBCTTCSCEEEEEEEEETTEEEEEEEEEETTEE---EEEETT
T ss_pred eEEEECCCCCChhHHHHHHHHhcc---CC-CCCCCHHHHhccCCCcEEEEEEEecCCceEEEEEEEECCce---EEEECC
Confidence 677999999999999 99987654 35 88899999998766410 0001111 11001121 367899
Q ss_pred --CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH
Q 003944 178 --FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA 220 (784)
Q Consensus 178 --~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~ 220 (784)
++.+|+.+ +.-..+.|+.+ .|+...|.+||.++
T Consensus 101 ~~~~~~~l~g-l~~v~~~p~d~---------~li~g~p~~RR~fl 135 (359)
T 2o5v_A 101 VRARTGDLPR-GGAVWIRPEDS---------ELVFGPPSGRRAYL 135 (359)
T ss_dssp EEECGGGCCS-CCEEEECTTTT---------HHHHSCHHHHHHHH
T ss_pred eEcCHHHHhC-chheEECcccH---------hhhcCCHHHHHHHH
Confidence 66778777 66666777765 57899999999998
No 13
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.82 E-value=6.9e-06 Score=89.02 Aligned_cols=42 Identities=24% Similarity=0.111 Sum_probs=30.5
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCC
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGS 150 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~ 150 (784)
.|.-++|||||||||| |||.|||+..+ ..|..+..|+|..|.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l~~~~--~~~~~~~~~~~~~~~ 66 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGLYWPL--RIKDIKKDEFTKVGA 66 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHCSC--CCTTCCHHHHBCTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCc--ccCcCCHHHHhcCCC
Confidence 4566899999999999 99999998632 224444556666553
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.61 E-value=0.014 Score=60.81 Aligned_cols=114 Identities=10% Similarity=0.195 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 003944 224 AAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRR 303 (784)
Q Consensus 224 a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~ 303 (784)
+.+|.++..+...+......+..+...+.....++..++.++..++. ++..+..++.+....+++.+..+..
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~-------~~~~~e~~i~~~~~ri~~~~~~l~~- 85 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKL-------QVSKNEQTLQDTNAKIASIQKKMSE- 85 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 44555555555555555555555555555555555555555555555 6666677777777777777777652
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003944 304 EDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (784)
Q Consensus 304 e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~ 347 (784)
-.....++.|+.+++.+..++..++.++.++...++.+....
T Consensus 86 --v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 86 --IKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp --CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113357777777777777777777777777777776665543
No 15
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.53 E-value=9.8e-05 Score=81.38 Aligned_cols=91 Identities=20% Similarity=0.126 Sum_probs=55.9
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhcccccccccccCCCcccCCCCC--------CC---CC----cccccccccCCCCcc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGD--------LS---PS----RQHKLTAQVKNRHAG 171 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~~~~~~~ra~~~~dli~~~~~~--------~~---p~----r~~k~~~~~~~~~s~ 171 (784)
+.-|+|||||||||| ++|.+++|..+ ..++|..|... .. .. |.+.. .+ .|
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~~~~--------~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~----~~--~~ 127 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLGGRA--------NHDLIRSGEKELLVTGFWGDGDESEADSASRRLSS----AG--RG 127 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTTCCC--------CGGGBCTTCSEEEEEEEC--------CEEEEEEET----TS--CE
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCc--------cHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEec----CC--ce
Confidence 677999999999999 99999998743 35777665431 00 00 11111 12 23
Q ss_pred ceeccC--CccchhhchhhhccCCccccccccccchhHHhhhcHHHhHHHH
Q 003944 172 HQLQNG--FSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLA 220 (784)
Q Consensus 172 ~~~~Ng--~~~~~~~~~l~~~~i~p~gyn~vmqgd~t~~~~m~e~err~i~ 220 (784)
.+++|| ++..++.++... +..++.|.+.. .-+++..++.++
T Consensus 128 ~i~ing~~~~~~~~~~~~~~------~i~~~~q~~~l--~l~~~~~~r~~l 170 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQG------RLTIHWQHSAV--SLLSPANQRGLL 170 (415)
T ss_dssp EEEETTEEECHHHHHHHHTT------TEEEETTTCTT--TTSSHHHHHHHH
T ss_pred EEEECCEECCHHHHHHHHhh------ceEEecCcccc--cccCHHHHHHHH
Confidence 589999 776665555432 22345565553 334777888777
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.37 E-value=0.015 Score=60.60 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.6
Q ss_pred hhhHHH
Q 003944 599 LVDRRI 604 (784)
Q Consensus 599 ~VDk~l 604 (784)
.||..|
T Consensus 172 ~i~~~l 177 (256)
T 3na7_A 172 KTEPKI 177 (256)
T ss_dssp TSCHHH
T ss_pred cCCHHH
Confidence 344444
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.24 E-value=0.044 Score=54.52 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQE 416 (784)
Q Consensus 377 eLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e 416 (784)
+|+..|+.+++...++.....++..+++..+.++......
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777777777777777655443
No 18
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.21 E-value=0.00015 Score=79.45 Aligned_cols=26 Identities=12% Similarity=-0.043 Sum_probs=22.2
Q ss_pred cccccchhHHhhhcHHHhHHHHHHHH
Q 003944 199 SKMQGKEKELADLLEEKNRSLAAERA 224 (784)
Q Consensus 199 ~vmqgd~t~~~~m~e~err~i~a~~a 224 (784)
++=||++.++...++.+|+.++...-
T Consensus 139 ~l~Qg~~~~~l~~~~~~r~~~l~~lf 164 (365)
T 3qf7_A 139 FLPQGEIDKLLISPPSEITEIISDVF 164 (365)
T ss_dssp EECTTCTTTTTTSCHHHHHHHHHHHT
T ss_pred EEcccchHHHHhcChhhHHHHHHHHH
Confidence 56799999999999999999985444
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.11 E-value=0.069 Score=72.45 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003944 517 RELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAK 577 (784)
Q Consensus 517 ~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~ 577 (784)
.++.++.++++.|+.++.++..+.+.++.+++..+.++...++.+..+-.|..+=.+.+..
T Consensus 2035 ~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2035 ATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 3334444455555555555555555555555555556555555555554443333333333
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.94 E-value=0.34 Score=48.20 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 003944 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE 433 (784)
Q Consensus 382 Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~ 433 (784)
+.-.+............+..++...+..-.+.+.++...++..++.+.+|..
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~ 63 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA 63 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555544444444333333333333333333
No 21
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.74 E-value=0.34 Score=65.99 Aligned_cols=12 Identities=42% Similarity=0.196 Sum_probs=11.1
Q ss_pred hccCCCCCcchh
Q 003944 111 LNGEYGLLKQNL 122 (784)
Q Consensus 111 ~~g~NGSgKsni 122 (784)
|.|.-||||+.+
T Consensus 1651 LVGvgGSGkqSL 1662 (3245)
T 3vkg_A 1651 LIGVSGGGKSVL 1662 (3245)
T ss_dssp EEESTTSSHHHH
T ss_pred EecCCCCcHHHH
Confidence 679999999998
No 22
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.58 E-value=0.00049 Score=70.71 Aligned_cols=48 Identities=6% Similarity=-0.165 Sum_probs=37.2
Q ss_pred Cccchhhchhhhc-cCCccccc--------cccccchhHHhhhcHHHhHHHH--HHHHHH
Q 003944 178 FSKQDGVSNGSHA-LQTEVVQS--------SKMQGKEKELADLLEEKNRSLA--AERAAY 226 (784)
Q Consensus 178 ~~~~~~~~~l~~~-~i~p~gyn--------~vmqgd~t~~~~m~e~err~i~--a~~a~~ 226 (784)
++..|+.+.+... |+..+.|. ++-||+..+|+.. +.+|+.+- .+...|
T Consensus 148 ~~~~dv~~~i~~~lGl~~~~F~~~~~y~~v~l~QG~f~~fL~a-~~eR~~l~~l~~~~~y 206 (227)
T 1qhl_A 148 LPLNELKDKLEAMEGVQFKQFNSITDYHSLMFDLGIIARRLRS-ASDRSKFYRLIEASLY 206 (227)
T ss_dssp CCHHHHHHHHHTSTTCEEEECSCHHHHHHHHHHTTSBSSCCCS-HHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHCCCHHHhcCccccceEEeccchHHHhhcC-HHHHHHHHHHHCcHHH
Confidence 6778999988887 89999995 5669999999999 66888733 444444
No 23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.09 E-value=1.2 Score=43.47 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKE 548 (784)
Q Consensus 469 ~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Ele 548 (784)
.+...+.+|+..+..+.........++..||..|++- ...-.+....+.++...+..|..+++..+........+..
T Consensus 45 ~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qE---r~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r 121 (168)
T 3o0z_A 45 QLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE---RRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERK 121 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666677777777766643 2233344555667788888888888888888888888888
Q ss_pred HHHHHhhhHHHHHHHHH
Q 003944 549 EILVKLSHSEKMLAEGK 565 (784)
Q Consensus 549 el~ekL~~lE~~l~dlK 565 (784)
.+.+++..+++....+.
T Consensus 122 ~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 122 EAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888887777665544
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.98 E-value=0.17 Score=62.84 Aligned_cols=24 Identities=13% Similarity=-0.025 Sum_probs=16.1
Q ss_pred hhhhHhhhhhhccCCCCCcchh-hH
Q 003944 101 LKEKEEQISRLNGEYGLLKQNL-DA 124 (784)
Q Consensus 101 ~~~~~~~~~~~~g~NGSgKsni-d~ 124 (784)
|....=+-+|-..||-.-+.+. |.
T Consensus 651 L~~t~phfVRCIkPN~~k~p~~fd~ 675 (1080)
T 2dfs_A 651 LNATTPHYVRCIKPNDFKFPFTFDE 675 (1080)
T ss_dssp HHSSEEEEEEEECCCSSCCTTCCCH
T ss_pred HHhcCCeeEEEecCCCCCCchhcCH
Confidence 3344455577778888888877 64
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.38 E-value=0.12 Score=64.14 Aligned_cols=14 Identities=0% Similarity=-0.230 Sum_probs=7.7
Q ss_pred chhhhccCCccccc
Q 003944 185 SNGSHALQTEVVQS 198 (784)
Q Consensus 185 ~~l~~~~i~p~gyn 198 (784)
.+|...++.|++|.
T Consensus 730 ~il~~~~~~~~~~~ 743 (1080)
T 2dfs_A 730 NVLEKLILDKDKYQ 743 (1080)
T ss_dssp HHHTTTSCCGGGEE
T ss_pred HHHHHhcCChhhhe
Confidence 34555555666654
No 26
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.34 E-value=2.3 Score=41.42 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHHHHHH
Q 003944 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETC 393 (784)
Q Consensus 314 eLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~ELeele 393 (784)
+|+.....+......|.+++-.|+..++..+.... . .. ....+++..+..|..+++.+.
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~-q---------------~s-----e~~~elq~ri~~L~~El~~~k 110 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAILEAERRDRG-H---------------DS-----EMIGDLQARITSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---------------HH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---------------HH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555554443 0 00 011255556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003944 394 SERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 394 ~e~~ka~~EL~rLr~eL~e~E~ 415 (784)
....++..+...|...+...+.
T Consensus 111 ~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 111 HNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655544
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.86 E-value=1.5 Score=40.93 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhh
Q 003944 223 RAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKM 270 (784)
Q Consensus 223 ~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~ 270 (784)
++..+.++.....++..+++++........+.......|..+...+..
T Consensus 8 ~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~ 55 (129)
T 2fxo_A 8 SAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665555555555555555555444443
No 28
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.79 E-value=3.1 Score=40.08 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 468 QKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAE 508 (784)
Q Consensus 468 ~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~e 508 (784)
..+..+|..|+..+..+...-+.....+..|+..++.++.+
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~ 113 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666555555555555555555555555333
No 29
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.39 E-value=2.6 Score=39.18 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 003944 570 KLEEDNAKLRLAVE 583 (784)
Q Consensus 570 kL~~eie~L~kaLd 583 (784)
++..++..|.+.|+
T Consensus 108 kle~e~~~Lk~~le 121 (129)
T 2fxo_A 108 KLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 30
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=94.08 E-value=3.7 Score=38.06 Aligned_cols=33 Identities=27% Similarity=0.243 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 554 LSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSM 586 (784)
Q Consensus 554 L~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl 586 (784)
|..++.++++...-+..|..-|..|++.|++--
T Consensus 100 LrELEADLKEKDsMVe~LT~TiG~LrKELEdEk 132 (167)
T 4gkw_A 100 LGELEADLKEKDSMVESLTETIGILRKELENEK 132 (167)
T ss_dssp THHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555545555555666666555443
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.04 E-value=0.85 Score=52.32 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 382 LQKLEKDLKETCSERDKALQELTRLKQHLI 411 (784)
Q Consensus 382 Ie~Le~ELeele~e~~ka~~EL~rLr~eL~ 411 (784)
+..++.++..++.+.......+...+.++.
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~ 487 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEID 487 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444433333444444444433
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.99 E-value=0.58 Score=43.75 Aligned_cols=96 Identities=23% Similarity=0.236 Sum_probs=43.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 468 QKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEK 547 (784)
Q Consensus 468 ~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~El 547 (784)
...+.++.+++..+..+..+++........|+..+.+.+ .++..++..++..+..+..++..++.++.....+.
T Consensus 34 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e------~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 34 QSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK------GRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555554444444444444444443321 23444555555555555555555555544433321
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 548 EEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVE 583 (784)
Q Consensus 548 eel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLd 583 (784)
. .+-++| ..|.-+|..|++-|+
T Consensus 108 q-----------~Ll~vK---l~Ld~EIatYRkLLE 129 (131)
T 3tnu_A 108 K-----------ILLDVK---TRLEQEIATYRRLLE 129 (131)
T ss_dssp H-----------HHHHHH---HHHHHHHHHHHHHTT
T ss_pred H-----------HHHHHH---HHHHHHHHHHHHhHC
Confidence 1 122333 236667888877664
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.86 E-value=0.66 Score=43.24 Aligned_cols=95 Identities=26% Similarity=0.233 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKE 548 (784)
Q Consensus 469 ~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Ele 548 (784)
..+.++.+++..+..+..+++........|+..+.+. ..++..++..++..+..+..++..++.++.....+..
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~------e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA------EQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444455555555555444544444444444444332 1244555555566666666555555555544333211
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 549 EILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVE 583 (784)
Q Consensus 549 el~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLd 583 (784)
.+-++| ..|.-+|..|++-|+
T Consensus 107 -----------~LlnvK---l~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 107 -----------ELMNTK---LALDVEIATYRKLLE 127 (129)
T ss_dssp -----------HHHHHH---HHHHHHHHHHHHTTC
T ss_pred -----------HHHHHH---HHHHHHHHHHHHhHC
Confidence 122333 236667777776553
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.58 E-value=1.1 Score=51.41 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 515 LERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 582 (784)
Q Consensus 515 le~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaL 582 (784)
+.++...++...+.+..++...+++++..+.+++.++.+...+++.+...+..+..++.++..++..+
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33333344444444444444455555555455444444555555555555555555555555444444
No 35
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.38 E-value=5.9 Score=38.11 Aligned_cols=6 Identities=0% Similarity=-0.551 Sum_probs=2.3
Q ss_pred HHHHHH
Q 003944 247 VQLKLQ 252 (784)
Q Consensus 247 l~~~Le 252 (784)
.+.+.+
T Consensus 16 ad~Kye 21 (155)
T 2efr_A 16 NYHLEN 21 (155)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 333333
No 36
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=93.25 E-value=0.12 Score=41.83 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcCCCHHHHHHhhhh
Q 003944 602 RRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGMA 642 (784)
Q Consensus 602 k~lv~nL~~~y~~~~~~~evL~Lia~~L~~~~eek~k~Gl~ 642 (784)
=.-++|++..|+.+...+.|+..|+++|.|+.+|++.+--.
T Consensus 7 ~EYLrNVl~~ym~g~~~~~m~kaI~avL~Fs~~e~q~il~~ 47 (60)
T 1upt_B 7 FEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILER 47 (60)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 46689999999999988999999999999999999998443
No 37
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.80 E-value=7.1 Score=37.48 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 478 NNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEY-LKNADQRAEVSRSEKEEILVKLSH 556 (784)
Q Consensus 478 keeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~e-Lkeak~eie~l~~Eleel~ekL~~ 556 (784)
+.++..+..++.....++..|+..+..-...- ..-+.+...+..+++.|+.. ..++..-+.....+...++.+...
T Consensus 43 r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R---~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~ 119 (154)
T 2ocy_A 43 KEDYNTLKRELSDRDDEVKRLREDIAKENELR---TKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKR 119 (154)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344343344444444555544443221111 11223334445555555554 345555555444444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003944 557 SEKMLAEGKGRANKLEEDN 575 (784)
Q Consensus 557 lE~~l~dlK~ei~kL~~ei 575 (784)
++..+.+.+..+..++..+
T Consensus 120 L~~ql~e~~~~l~~lq~ql 138 (154)
T 2ocy_A 120 LTEQLREKDTLLDTLTLQL 138 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555444333333333
No 38
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.43 E-value=0.7 Score=42.59 Aligned_cols=83 Identities=19% Similarity=0.349 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccccccccCCCCCchHHHHHHHHHHHHHH
Q 003944 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~~~L~~~i~E~~~kI~~e~Ek~~~l~~keeLE~~Ie~Le~EL 389 (784)
..|..|+.+++.+..+...+..+++.+...++..+..+..+ + ..+..++..+..+++.+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E-----------~----------~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE-----------M----------LQREEAENTLQSFRQDV 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----------H----------HHHHHHHHHHHHhhhcc
Confidence 46778888888888888888888888888888887665511 1 12345555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 390 KETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 390 eele~e~~ka~~EL~rLr~eL~e~ 413 (784)
+++--.+..++..++.|+.++.-.
T Consensus 79 D~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 79 DNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655544444555555555544433
No 39
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.45 E-value=2.7 Score=37.54 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=18.7
Q ss_pred HHHHHHhhhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 003944 261 FQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 261 Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~ 301 (784)
++.+++..+....+...++..|...+.-++.+++.++..|.
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444455555555555555555553
No 40
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.25 E-value=4.1 Score=36.80 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 473 IIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 510 (784)
Q Consensus 473 qieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiE 510 (784)
+|+.|+..|..+++.+..+..++..++..+.+....++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE 62 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME 62 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666655555444333
No 41
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.57 E-value=6.8 Score=34.75 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 475 DGLNNKLANCMRTIEAKNVELLNLQTAL 502 (784)
Q Consensus 475 eeLkeeLe~l~~eLe~~n~El~nLq~eL 502 (784)
+.++.++..+..++.....++..|+..+
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444444444444444444444444333
No 42
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=90.25 E-value=3.3 Score=35.34 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 526 SAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 526 ie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~~ 591 (784)
+..|..+...+..+++.+...+.....+....+..+..+...+..+..+++.+...|..|..+|..
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444445555566666667767777777888888888888777754
No 43
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.19 E-value=6.2 Score=36.54 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=17.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQ 499 (784)
Q Consensus 467 I~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq 499 (784)
+..+...+..+..++..+..++.....++..|.
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544444443
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.19 E-value=1.3 Score=41.79 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 314 NLKRVVATLEKENNSLKMEKTELVAALE 341 (784)
Q Consensus 314 eLq~eieeL~kei~eLe~ei~eLe~eLe 341 (784)
++..++.++.+++..|..++..|+.+++
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444
No 45
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.15 E-value=3.6 Score=36.18 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 472 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYF 506 (784)
Q Consensus 472 eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq 506 (784)
+++..|+.+++.+-+.+.....+-..|..++..++
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777766666665555555665555543
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.03 E-value=8.1 Score=43.61 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 003944 574 DNAKLRLAVEQSMT 587 (784)
Q Consensus 574 eie~L~kaLdkAl~ 587 (784)
+.+.+++.|++++.
T Consensus 177 sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 177 DYEDQQKQLEQVIA 190 (562)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 45667777777664
No 47
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.94 E-value=5.9 Score=36.82 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=16.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQ 499 (784)
Q Consensus 467 I~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq 499 (784)
+..+...+..+..++..+..++.....++..|.
T Consensus 79 l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll 111 (131)
T 3tnu_A 79 LAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILL 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444444443
No 48
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=89.39 E-value=7.1 Score=38.08 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=68.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Q 003944 468 QKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLER-------------ELALAREESAKLSEYLK 534 (784)
Q Consensus 468 ~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~-------------El~~LreEie~L~~eLk 534 (784)
.....+++.+-+++..+..++.-++..+......+.-|+.++...+++.. |+..+..-.+.|..
T Consensus 27 ~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~Lks--- 103 (170)
T 3l4q_C 27 QDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKS--- 103 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHHHH---
Confidence 33445566666666666666666666666666666666555543332211 11122222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 003944 535 NADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVD 595 (784)
Q Consensus 535 eak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~~~~~~ 595 (784)
.+..+......+.+.+.........++.++..++-++..|.+--|.-++.|+.....
T Consensus 104 ----RL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~Gv~ 160 (170)
T 3l4q_C 104 ----RIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGAR 160 (170)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333333333333334444455667777888889999999999999999875444
No 49
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=88.91 E-value=15 Score=34.15 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003944 529 LSEYLKNADQRAEVSRS 545 (784)
Q Consensus 529 L~~eLkeak~eie~l~~ 545 (784)
|.+.|++.+.-++.+..
T Consensus 103 LEADLKEKDsMVe~LT~ 119 (167)
T 4gkw_A 103 LEADLKEKDSMVESLTE 119 (167)
T ss_dssp HHHTHHHHHHHHHHHHH
T ss_pred HHhHHhhhhHHHHHHHH
Confidence 34444444444444443
No 50
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.72 E-value=9.6 Score=35.89 Aligned_cols=60 Identities=23% Similarity=0.216 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 523 REESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 582 (784)
Q Consensus 523 reEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaL 582 (784)
+.+.+.|..++.+...++..++.++.....++..+.+.+.+++.++..|+..+..|...|
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444445555555554444
No 51
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=88.53 E-value=26 Score=36.58 Aligned_cols=8 Identities=25% Similarity=0.410 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 003944 402 ELTRLKQH 409 (784)
Q Consensus 402 EL~rLr~e 409 (784)
.++.++..
T Consensus 111 ~veelk~~ 118 (273)
T 3s84_A 111 NVEELKGR 118 (273)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33333333
No 52
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.29 E-value=5.6 Score=35.32 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 003944 278 EITEMRKELNGKLSELRRLQMEL 300 (784)
Q Consensus 278 Ei~~L~~EL~ele~EL~~LqeeL 300 (784)
++..+...+.-++.+++.++..+
T Consensus 45 ei~sL~kKiq~lE~eld~~~e~l 67 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEKYSESV 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.63 E-value=14 Score=41.62 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK 512 (784)
Q Consensus 469 ~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~ 512 (784)
.|+.+|..|+.++......+..+...|.++..++.+++..|+.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665555555555556666666666666666654
No 54
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.32 E-value=1.8 Score=37.55 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 312 ieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
|.+|+.++..+..+...+..+++.+...++..+..+.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888877776655
No 55
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.97 E-value=22 Score=34.07 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 534 KNADQRAEVSRSEKEEILVK-LSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 534 keak~eie~l~~Eleel~ek-L~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~ 590 (784)
..+......+..|++++..- ..+..+++.+.+.+...+...+..|.+.|..+-..+.
T Consensus 75 ~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 75 TKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433 2344555555544444455555555555544444443
No 56
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=85.68 E-value=16 Score=32.48 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 473 IIDGLNNKLANCMRTIEAKNVELLNLQTALG 503 (784)
Q Consensus 473 qieeLkeeLe~l~~eLe~~n~El~nLq~eLe 503 (784)
++++++.++..+.........++..+...+.
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444333333333334444444343
No 57
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=85.50 E-value=0.24 Score=47.55 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=27.5
Q ss_pred hHhhhhHHH--Hhhh-----hHhhhhhhccCCCCCcchh-hHHHHhh
Q 003944 91 KALSVNYAA--LLKE-----KEEQISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 91 ~~~~~~~~~--~~~~-----~~~~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
..+++.|+. .+.. +.-++.-|.||||||||-+ -++.-.+
T Consensus 11 ~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 11 EFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345555653 2333 4556888999999999999 8776655
No 58
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.35 E-value=11 Score=32.27 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=19.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 466 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQ 504 (784)
Q Consensus 466 eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeq 504 (784)
.|..++.++++|+.+-..+..+..........|..+..+
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~q 59 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNH 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 355556666666665555544444444333334333333
No 59
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=85.06 E-value=9.5 Score=36.42 Aligned_cols=13 Identities=8% Similarity=0.337 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 003944 571 LEEDNAKLRLAVE 583 (784)
Q Consensus 571 L~~eie~L~kaLd 583 (784)
...+++.++.++|
T Consensus 137 k~qEAe~MN~an~ 149 (152)
T 3a7p_A 137 TEKETEAMNSEID 149 (152)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHhcc
Confidence 5566777766664
No 60
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.27 E-value=25 Score=32.15 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 471 KEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAE 508 (784)
Q Consensus 471 ~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~e 508 (784)
..+|.+|+..+..+..+......++.+++..++.|...
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K 56 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556555555555555666666676666666443
No 61
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.19 E-value=14 Score=31.61 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 515 LERELALAREESAKLSEYLKNADQRAEVSR 544 (784)
Q Consensus 515 le~El~~LreEie~L~~eLkeak~eie~l~ 544 (784)
++.++.+|+.+...|..+..+++...+.+.
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~ 54 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 334444444444444444444433333333
No 62
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=82.83 E-value=0.26 Score=47.32 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.5
Q ss_pred hhhhhccCCCCCcchh-hH
Q 003944 107 QISRLNGEYGLLKQNL-DA 124 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~ 124 (784)
.+.-|.||||||||-+ -.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4556899999999987 54
No 63
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=82.53 E-value=0.46 Score=45.50 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=25.5
Q ss_pred hhhHHHHhhhhHhhhhhhccCCCCCcchh-hHHHHhh
Q 003944 94 SVNYAALLKEKEEQISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
-.+|+.-+.-..-++.=|.||||+|||-+ -++.-.+
T Consensus 26 ~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 26 IRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455545444567788999999999999 7765543
No 64
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=82.33 E-value=11 Score=32.49 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 476 GLNNKLANCMRTIEAKNVELLNLQTALGQYFA 507 (784)
Q Consensus 476 eLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~ 507 (784)
+|+.++..+..+......++.+++..++.|..
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~ 35 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 35 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333444444555555555555533
No 65
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=82.09 E-value=62 Score=35.20 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 003944 576 AKLRLAVEQS 585 (784)
Q Consensus 576 e~L~kaLdkA 585 (784)
+...++|+++
T Consensus 182 e~qqKQL~qv 191 (390)
T 1deq_A 182 KNQQKQLEQV 191 (390)
T ss_pred HHHHHHHHhh
Confidence 3344455554
No 66
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.04 E-value=27 Score=30.95 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 556 HSEKMLAEGKGRANKLEEDNAKLRLAV 582 (784)
Q Consensus 556 ~lE~~l~dlK~ei~kL~~eie~L~kaL 582 (784)
+..+++.+.+.+...+...+..|...|
T Consensus 66 EAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 66 EANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333333444444444444
No 67
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=81.92 E-value=0.38 Score=46.75 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.5
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
.+.-|+||||||||-+ ..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHH
Confidence 4567899999999998 554
No 68
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=81.56 E-value=0.41 Score=46.41 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=15.7
Q ss_pred hhhhccCCCCCcchh-hHHHH
Q 003944 108 ISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f 127 (784)
|.-|+||||||||-+ ..+.-
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999 66553
No 69
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=81.08 E-value=17 Score=34.57 Aligned_cols=69 Identities=25% Similarity=0.196 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 525 ESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 593 (784)
Q Consensus 525 Eie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~~~~ 593 (784)
.+..|..+|++++..........+++..++..++.++.-...+.......+..|...|...-..|+++-
T Consensus 53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444455555555555555555555555555555555554444444455555555555555555555443
No 70
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=80.56 E-value=58 Score=33.89 Aligned_cols=12 Identities=0% Similarity=0.288 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 003944 470 SKEIIDGLNNKL 481 (784)
Q Consensus 470 l~eqieeLkeeL 481 (784)
++.+++.++..+
T Consensus 214 ~~qq~e~f~~~~ 225 (273)
T 3s84_A 214 LDQQVEEFRRRV 225 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344455554444
No 71
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=80.22 E-value=7.8 Score=35.71 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH
Q 003944 556 HSEKMLAEGKGRA 568 (784)
Q Consensus 556 ~lE~~l~dlK~ei 568 (784)
..+..|..+|..+
T Consensus 103 a~Eerf~KLKe~y 115 (120)
T 3i00_A 103 ANEQRYSKLKEKY 115 (120)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 72
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=80.11 E-value=0.48 Score=46.67 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=16.1
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
++.-|+||||||||-+ ..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 3556899999999999 6654
No 73
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=79.36 E-value=56 Score=35.63 Aligned_cols=119 Identities=13% Similarity=0.182 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 475 DGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELAL------AREESAKLSEYLKNADQRAEVSRSEKE 548 (784)
Q Consensus 475 eeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El~~------LreEie~L~~eLkeak~eie~l~~Ele 548 (784)
+.+-.++..+..++..+...+......+.-|+.++...+++..+.-+ -..++..+..-...++..+..+.....
T Consensus 143 ~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~ 222 (373)
T 3hhm_B 143 DRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRR 222 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555554444444443322100 011223333333334444444433333
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 549 EILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 593 (784)
Q Consensus 549 el~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~~~~ 593 (784)
.+.+.+......+..++.++..++=++..|.+-=|+.++.|+...
T Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g 267 (373)
T 3hhm_B 223 RLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKG 267 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcC
Confidence 333334344444555666677777788888887777777777644
No 74
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.31 E-value=32 Score=31.09 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 003944 472 EIIDGLNNKLAN 483 (784)
Q Consensus 472 eqieeLkeeLe~ 483 (784)
.++++++.++..
T Consensus 45 ~~idelk~ei~q 56 (110)
T 2v4h_A 45 ELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344445544444
No 75
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.13 E-value=26 Score=33.46 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 313 eeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
+.....+..|+.++..++.++..|..++..+.....
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e 99 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTE 99 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446777777777777777777777777765443
No 76
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=79.08 E-value=0.61 Score=45.43 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=16.3
Q ss_pred hhccCCCCCcchh-hHHHHhhh
Q 003944 110 RLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L~ 130 (784)
-|.||||||||-+ -.+.-.++
T Consensus 4 ~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHHG
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999 66655453
No 77
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=79.00 E-value=0.53 Score=47.51 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=16.7
Q ss_pred hhhhhccCCCCCcchh-hHHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f 127 (784)
.+.-|+||||||||-+ ..+.-
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4566899999999999 66443
No 78
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=78.96 E-value=23 Score=31.13 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 475 DGLNNKLANCMRTIEAKNVELLNLQTAL 502 (784)
Q Consensus 475 eeLkeeLe~l~~eLe~~n~El~nLq~eL 502 (784)
+.|...|..++..+..+...+..|+..+
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~ 32 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEA 32 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 79
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.28 E-value=5.3 Score=37.51 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=18.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003944 522 AREESAKLSEY-LKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKG 566 (784)
Q Consensus 522 LreEie~L~~e-Lkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ 566 (784)
+..+++.|+.. ..++..-+.....+...+..+...++..+.+.+.
T Consensus 72 ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 72 LNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDM 117 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 2333333333333333333444444444444333
No 80
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=78.28 E-value=17 Score=31.52 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHH
Q 003944 223 RAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDE 264 (784)
Q Consensus 223 ~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkee 264 (784)
++..+.++.....++..+++.++.......+.......|..+
T Consensus 9 ~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~e 50 (89)
T 3bas_A 9 IARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQ 50 (89)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777766655555544444444443
No 81
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=78.22 E-value=0.59 Score=46.05 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=17.7
Q ss_pred hhhhhhccCCCCCcchh-hHHHH
Q 003944 106 EQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f 127 (784)
-+|.-|.||||||||-+ ..|.-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45778999999999998 66543
No 82
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=78.21 E-value=40 Score=30.60 Aligned_cols=29 Identities=17% Similarity=0.341 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 517 RELALAREESAKLSEYLKNADQRAEVSRS 545 (784)
Q Consensus 517 ~El~~LreEie~L~~eLkeak~eie~l~~ 545 (784)
.++..++.....+...+.++.+.-+++.+
T Consensus 42 ~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 42 DDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 33333444444444444444444444444
No 83
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=78.05 E-value=0.67 Score=47.02 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=19.8
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhh
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
-.|.-|+||||||||-+ ..+.-.||
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35788999999999999 76555455
No 84
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=77.67 E-value=0.66 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=18.4
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.+.-|+||||||||-+ ..+.-.++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999 66555455
No 85
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=77.56 E-value=0.48 Score=46.41 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=19.7
Q ss_pred hhhhHhhhhhhccCCCCCcchh-hHHHHhh
Q 003944 101 LKEKEEQISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 101 ~~~~~~~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
++...-.+.=|+||||||||-+ -.+.-.+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3344456778999999999999 7665444
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.23 E-value=84 Score=34.76 Aligned_cols=11 Identities=0% Similarity=0.006 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 003944 400 LQELTRLKQHL 410 (784)
Q Consensus 400 ~~EL~rLr~eL 410 (784)
...+...+...
T Consensus 373 e~~~~~~~~~~ 383 (487)
T 3oja_A 373 DEQVSNGRRAH 383 (487)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 87
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=77.10 E-value=0.53 Score=48.00 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.4
Q ss_pred HhhhhhhccCCCCCcchh
Q 003944 105 EEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni 122 (784)
.-++.-|.||||||||-+
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456778999999999977
No 88
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=77.10 E-value=1.1 Score=47.27 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=18.4
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.|.-|+||||||||-+ ..+.-.++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4677999999999999 65544444
No 89
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=76.93 E-value=0.77 Score=43.29 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=17.3
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+||||||||-+ -.+.-.||
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999 65544445
No 90
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=76.77 E-value=0.68 Score=46.30 Aligned_cols=20 Identities=20% Similarity=0.086 Sum_probs=12.4
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
.|.-|+||||||||-+ ..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 4667999999999999 6544
No 91
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=76.71 E-value=0.81 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.048 Sum_probs=17.9
Q ss_pred hHhhhhhhccCCCCCcchh-hHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
..-++.-|.||||||||-+ -.+
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l 42 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAK 42 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 3456888999999999999 654
No 92
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=76.58 E-value=11 Score=33.71 Aligned_cols=35 Identities=34% Similarity=0.423 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 309 NDVVENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 309 ~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~ 343 (784)
...+..++.+|+.|+.+...|+.++..|+.+++..
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999874
No 93
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=76.32 E-value=0.72 Score=44.43 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=16.4
Q ss_pred hhhhccCCCCCcchh-hHHHH
Q 003944 108 ISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f 127 (784)
+.-|+||||||||-+ ..+.-
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999 77654
No 94
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=76.28 E-value=21 Score=30.80 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q 003944 570 KLEEDNAKLRLAVEQ 584 (784)
Q Consensus 570 kL~~eie~L~kaLdk 584 (784)
.|.-+|..|++-|+.
T Consensus 67 ~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 67 ALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcC
Confidence 466778888888763
No 95
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=75.83 E-value=0.99 Score=46.60 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=24.7
Q ss_pred HhHhhhhHHHHhhhhHhhhhhhccCCCCCcchh-hHHHHhhh
Q 003944 90 IKALSVNYAALLKEKEEQISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
++.+|+.-..+|+ ..+.-|+||+|||||-+ -.+.-.||
T Consensus 35 l~~~~~~i~~~l~---g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 35 LKKKAEEVKPYLN---GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp HHHHHHTTHHHHT---TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhcC---CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4444444443332 34566999999999999 66655565
No 96
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=75.74 E-value=0.82 Score=46.22 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=20.5
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
.+.-|.||||||||-+ -.+.-.||+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4677999999999999 877766664
No 97
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=75.73 E-value=18 Score=30.83 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=25.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLEREL 519 (784)
Q Consensus 467 I~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El 519 (784)
...++.++..++..++....+-.....++..+...++ ..|..+..++..+
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld---~KI~eL~elRqgL 71 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD---VSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHH
Confidence 3445566666666666665555555555555533333 2344443343333
No 98
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=75.51 E-value=47 Score=30.10 Aligned_cols=11 Identities=27% Similarity=0.247 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 003944 495 LLNLQTALGQY 505 (784)
Q Consensus 495 l~nLq~eLeql 505 (784)
+..||.++..+
T Consensus 37 ~~~Lq~El~~l 47 (111)
T 2v66_B 37 VSVLEDDLSQT 47 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 99
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=75.19 E-value=78 Score=32.47 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=30.8
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 283 RKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 283 ~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~ 344 (784)
...+.+...=|...+..+..........+|..+......+..++......+..+...-..+.
T Consensus 9 ~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~ 70 (322)
T 1u4q_A 9 NTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLM 70 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 33444444455555555542222122245555555556666666655555555555444443
No 100
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=75.16 E-value=0.75 Score=44.13 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.4
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
.+.-|+||||||||-+ -.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 4566899999999998 543
No 101
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=75.14 E-value=27 Score=29.88 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 495 LLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILV 552 (784)
Q Consensus 495 l~nLq~eLeqlq~eiEa~erle~El~~LreEie~L~~eLkeak~eie~l~~Eleel~e 552 (784)
+.+||..|+ .+|.++.-++.++...+...-.+..+|+++..+...+..+++.+.+
T Consensus 12 ~leLQSALe---aEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 12 LRELQEALE---EEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666554 3455655566666666666666666666555555555554444433
No 102
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=75.04 E-value=29 Score=30.83 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
....++..+..+..++..++.++.++..-++.+..
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~ 48 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKALDEIES 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455555566666666666666666666655543
No 103
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=74.67 E-value=1 Score=44.38 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=20.6
Q ss_pred HhhhhhhccCCCCCcchh-hHHHHhhh
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.-.+.-+.||||||||-+ -.+.-.|.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456788999999999999 76665554
No 104
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=74.55 E-value=0.85 Score=45.58 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=18.3
Q ss_pred HhhhhhhccCCCCCcchh-hHHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f 127 (784)
.-++.-|.||||||||-+ ..+.-
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356778999999999999 76543
No 105
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=74.41 E-value=0.78 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=17.6
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ -.|.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999988 6543
No 106
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=74.20 E-value=0.87 Score=46.63 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=16.4
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
++.-|.||||||||-+ -.|
T Consensus 25 e~~~liG~nGsGKSTLl~~l 44 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELI 44 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 6888999999999988 654
No 107
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=74.09 E-value=41 Score=28.71 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 515 LERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVE 583 (784)
Q Consensus 515 le~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~lE~~l~dlK~ei~kL~~eie~L~kaLd 583 (784)
+..++..++..+..+..++..++.++.....+.. .+-++| ..|.-+|..|++-|+
T Consensus 24 ~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq-----------~LlnvK---~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 24 FAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQ-----------DLLNVK---MALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH---HhhHHHHHHHHHHHc
Confidence 3444444555555555555555554443333211 122333 236667888887775
No 108
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=74.04 E-value=1.2e+02 Score=34.04 Aligned_cols=9 Identities=11% Similarity=0.290 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 003944 442 ILHLENVLK 450 (784)
Q Consensus 442 L~~lEreLk 450 (784)
|.+|+..+.
T Consensus 102 LqeLe~~l~ 110 (464)
T 1m1j_B 102 LRDLKDRVA 110 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 109
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=74.04 E-value=0.74 Score=46.47 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=16.5
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 345777999999999987 543
No 110
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=73.86 E-value=46 Score=29.23 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 561 LAEGKGRANKLEEDNAKLRLAVEQSMTRL 589 (784)
Q Consensus 561 l~dlK~ei~kL~~eie~L~kaLdkAl~rl 589 (784)
|.+.+..+....++...+.-.++-+...|
T Consensus 62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 111
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=73.83 E-value=64 Score=35.55 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALG 503 (784)
Q Consensus 469 ~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLe 503 (784)
.++.+++++++.+..++.+-...|..+-.|+.-|+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLD 435 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH
Confidence 35667777777777777666666766666665555
No 112
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.47 E-value=6.3 Score=36.99 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 540 AEVSRSEKEEILVK-LSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRL 589 (784)
Q Consensus 540 ie~l~~Eleel~ek-L~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl 589 (784)
...+..|++++..- ..+..+++.+.+.+...+...+..|...|..+-..+
T Consensus 69 ~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 69 ADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433 345556666655555556666666666665554443
No 113
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=73.07 E-value=1.1 Score=43.20 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.2
Q ss_pred hhhhccCCCCCcchh-hHHH
Q 003944 108 ISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~ 126 (784)
|.-|.||||||||-+ -.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 445899999999998 6653
No 114
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=72.94 E-value=1e+02 Score=33.63 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 003944 377 EMEQSLQKLE 386 (784)
Q Consensus 377 eLE~~Ie~Le 386 (784)
+|+..|...+
T Consensus 53 rLqg~Ldk~e 62 (390)
T 1deq_A 53 RMKGLIDEVD 62 (390)
T ss_pred hHHHHHHHhh
Confidence 4444444444
No 115
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=72.87 E-value=90 Score=32.12 Aligned_cols=31 Identities=3% Similarity=-0.053 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALE 341 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe 341 (784)
.+..+-.....+..++......+..+...-.
T Consensus 38 ~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~ 68 (326)
T 3kbt_A 38 GAIVMLKRHLRQQRAVEDYGRNIKQLASRAQ 68 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 116
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=72.85 E-value=0.89 Score=46.04 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=17.0
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 445777999999999988 654
No 117
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=72.75 E-value=0.9 Score=46.84 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=17.0
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 554
No 118
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=72.49 E-value=1 Score=43.57 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=15.8
Q ss_pred hhhhccCCCCCcchh-hHHHH
Q 003944 108 ISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f 127 (784)
+.-|+||||||||-+ ..+.-
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999 65443
No 119
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.41 E-value=0.93 Score=46.24 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=16.8
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 543
No 120
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.41 E-value=57 Score=36.13 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 003944 571 LEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 571 L~~eie~L~kaLdkAl~rl~ 590 (784)
++.++..+..++.+|..+|+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 454 LKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHhcccHHH
Confidence 33344444444444444444
No 121
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=72.10 E-value=1.1 Score=46.13 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=16.9
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l 49 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKIL 49 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 553
No 122
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=71.93 E-value=0.96 Score=46.17 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=17.1
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLL 48 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 554
No 123
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=71.66 E-value=67 Score=36.05 Aligned_cols=42 Identities=7% Similarity=-0.008 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHH
Q 003944 221 AERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQ 262 (784)
Q Consensus 221 a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lk 262 (784)
+-....+..+.+|+..|..+.+........+......+...+
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q 134 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQ 134 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccc
Confidence 344445566666666666666555544444444333333333
No 124
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=71.66 E-value=1.1 Score=44.28 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=16.7
Q ss_pred hhhhhccCCCCCcchh-hHHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f 127 (784)
.+.=|+||||||||-+ ..+.-
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4566899999999999 66544
No 125
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=71.50 E-value=1.3 Score=42.02 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=15.7
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
.+.-|+||||||||-+ -.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 3566899999999998 5543
No 126
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=71.41 E-value=1.1 Score=44.56 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=17.6
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ -.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 345777999999999998 6654
No 127
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=71.36 E-value=1.2 Score=45.39 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=20.3
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
.+.-|+||||||||-+ -.+.-.||+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4778999999999999 776666664
No 128
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=71.20 E-value=1.2 Score=43.37 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=15.7
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.-|+||||||||-+ ..+.- ||
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEECCCCcCHHHHHHHHHH-CC
Confidence 45899999999999 55433 54
No 129
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.12 E-value=69 Score=35.27 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 317 RVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 317 ~eieeL~kei~eLe~ei~eLe~eLe~~~ 344 (784)
..+++++.++.++..++.++.+++++.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555666666666666655543
No 130
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=71.08 E-value=1 Score=46.17 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.5
Q ss_pred HhhhhhhccCCCCCcchh-hH
Q 003944 105 EEQISRLNGEYGLLKQNL-DA 124 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~ 124 (784)
.-++.-|.||||||||-+ -.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~ 54 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKL 54 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456778999999999988 54
No 131
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=71.05 E-value=1.8 Score=46.13 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=27.0
Q ss_pred hHhHhhhhHH-HHhhh-----hHhhhhhhccCCCCCcchh-hHHHH
Q 003944 89 EIKALSVNYA-ALLKE-----KEEQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 89 ~~~~~~~~~~-~~~~~-----~~~~~~~~~g~NGSgKsni-d~~~f 127 (784)
+++.++|-|. ..|+. ..-++.-|.||||||||-+ -.++-
T Consensus 103 ~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 103 NYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEEEEEcChhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4678888884 22332 2345667999999999999 66553
No 132
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=71.02 E-value=0.87 Score=45.88 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.9
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 553
No 133
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=70.90 E-value=1 Score=46.57 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=16.7
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456777999999999987 543
No 134
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=70.85 E-value=1.2 Score=46.25 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=19.3
Q ss_pred HhhhhhhccCCCCCcchh-hHHHHhh
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
.-.+.-++||||||||-+ -+++-.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 456778999999999998 6655433
No 135
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=70.85 E-value=35 Score=30.48 Aligned_cols=34 Identities=3% Similarity=-0.061 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 470 SKEIIDGLNNKLANCMRTIEAKNVELLNLQTALG 503 (784)
Q Consensus 470 l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLe 503 (784)
++++-..+.-++..+.+.++.....+..++++..
T Consensus 21 LDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~ 54 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYE 54 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444333
No 136
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=70.77 E-value=1.1 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=16.4
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 345677999999999988 553
No 137
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=70.67 E-value=1.1 Score=47.02 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=23.4
Q ss_pred hHhHhhhhHHH---Hhhh-----hHhhhhhhccCCCCCcchh
Q 003944 89 EIKALSVNYAA---LLKE-----KEEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 89 ~~~~~~~~~~~---~~~~-----~~~~~~~~~g~NGSgKsni 122 (784)
+++.||+.|.. .|+. ..-++.-|.||||||||-+
T Consensus 9 ~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 9 KVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHH
T ss_pred EEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 45667777731 2322 4457788999999999977
No 138
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=70.43 E-value=1.1 Score=46.61 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=26.2
Q ss_pred hHhHhhhhHHH--Hhh-----hhHhhhhhhccCCCCCcchh-hHH
Q 003944 89 EIKALSVNYAA--LLK-----EKEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 89 ~~~~~~~~~~~--~~~-----~~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+++.|++.|.. .|+ =..-++.-|.||||||||-+ -.|
T Consensus 26 ~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 26 DVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH
T ss_pred EEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHH
Confidence 57788888842 222 23556778999999999988 553
No 139
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=70.24 E-value=1.1 Score=46.34 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=17.0
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 456778999999999987 553
No 140
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=70.24 E-value=34 Score=29.89 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
....++..+..+..++..++.++.++..-++.+..
T Consensus 9 ~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~ 43 (107)
T 1fxk_A 9 QFQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455555666666666666666666666555543
No 141
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=70.02 E-value=1.1 Score=46.26 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.2
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLL 66 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988 553
No 142
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=69.92 E-value=1.2 Score=46.19 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=16.7
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 456777999999999987 543
No 143
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=69.71 E-value=1.4 Score=42.94 Aligned_cols=22 Identities=23% Similarity=0.213 Sum_probs=16.1
Q ss_pred hhhccCCCCCcchhhHHHHhhh
Q 003944 109 SRLNGEYGLLKQNLDATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsnid~~~f~L~ 130 (784)
.-|+||||||||-+=.++..||
T Consensus 5 i~l~G~~GsGKST~~~~La~lg 26 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTDLG 26 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHCC
Confidence 4589999999999944444344
No 144
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=69.47 E-value=1.3 Score=47.22 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=21.3
Q ss_pred hHhhhhhhccCCCCCcchh-hHHHHhhhc
Q 003944 104 KEEQISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
+.-.|.-|.||||||||-+ ..|.-.|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3456788999999999999 766655543
No 145
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=69.30 E-value=1.5 Score=46.23 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=26.0
Q ss_pred hHHHHhhhhHhhhhhhccCCCCCcchh-hHHH
Q 003944 96 NYAALLKEKEEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 96 ~~~~~~~~~~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
|...|+.-...++.-|.||||+|||-+ -++.
T Consensus 155 gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 556677777788999999999999999 8876
No 146
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=69.28 E-value=1.2 Score=46.40 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=17.7
Q ss_pred hHhhhhhhccCCCCCcchh-hHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
..-++.-|.||||||||-+ ..|
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 4556788999999999988 553
No 147
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=69.11 E-value=1.6 Score=41.05 Aligned_cols=25 Identities=32% Similarity=0.183 Sum_probs=19.6
Q ss_pred HhhhhhhccCCCCCcchh-hHHHHhh
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
..++.-|.||||||||-+ .++.-.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345677999999999999 7766544
No 148
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=68.78 E-value=69 Score=29.08 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 473 IIDGLNNKLANCMRTIEAKNVELLNL 498 (784)
Q Consensus 473 qieeLkeeLe~l~~eLe~~n~El~nL 498 (784)
+.+.|+..+..+.+++.....+...|
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~L 32 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQEL 32 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333
No 149
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=68.73 E-value=1.4 Score=45.81 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=25.8
Q ss_pred hHhHhhhhHHH--Hh-----hhhHhhhhhhccCCCCCcchh-hHH
Q 003944 89 EIKALSVNYAA--LL-----KEKEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 89 ~~~~~~~~~~~--~~-----~~~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+++.|++.|.. .| .=..-++.-|.||||||||-+ -.|
T Consensus 22 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l 66 (267)
T 2zu0_C 22 SIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 66 (267)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH
T ss_pred EEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 47778888842 11 123456778999999999988 543
No 150
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=68.57 E-value=1 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=17.5
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ -.|.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 456778999999999998 6543
No 151
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=68.53 E-value=1 Score=46.80 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=23.7
Q ss_pred hHhHhhhhHHH--Hhh-----hhHhhhhhhccCCCCCcchh-hH
Q 003944 89 EIKALSVNYAA--LLK-----EKEEQISRLNGEYGLLKQNL-DA 124 (784)
Q Consensus 89 ~~~~~~~~~~~--~~~-----~~~~~~~~~~g~NGSgKsni-d~ 124 (784)
+++.|++.|.. .|+ =..-++.-|.||||||||-+ -.
T Consensus 13 ~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~ 56 (266)
T 4g1u_C 13 EASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRL 56 (266)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHH
T ss_pred EEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHH
Confidence 35556666642 122 23456778999999999988 44
No 152
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=68.42 E-value=70 Score=29.03 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 310 ~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e 346 (784)
..++.|+.+...+++++..+..+..+|+..+..+..+
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~ 42 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSED 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777776666655544
No 153
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=68.28 E-value=1.6 Score=42.60 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=18.6
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhh
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
-.+.-|.||||||||-+ -.+.-.|
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45777999999999999 6654444
No 154
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=68.06 E-value=1.3 Score=46.38 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=25.7
Q ss_pred hHhHhhhhHHH--Hhh-----hhHhhhhhhccCCCCCcchh-hHH
Q 003944 89 EIKALSVNYAA--LLK-----EKEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 89 ~~~~~~~~~~~--~~~-----~~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+++.|++.|.. .|+ =..-++.-|.||||||||-+ -.|
T Consensus 23 ~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 23 QLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHH
T ss_pred EEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHH
Confidence 46778888842 222 13456778999999999988 543
No 155
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=67.36 E-value=1.7 Score=42.23 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=18.4
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.=|+||+|||||-+ ..+.-.||
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 566899999999999 76655555
No 156
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=67.36 E-value=1.2 Score=43.72 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=16.8
Q ss_pred hhhhhhccCCCCCcchh-hHHH
Q 003944 106 EQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~ 126 (784)
-++.-|.||||||||-+ -.+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 45677999999999998 5544
No 157
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=67.25 E-value=63 Score=28.11 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 472 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 472 eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
.++..++.++..+..++.....++..+..+++++
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555544
No 158
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=66.58 E-value=1.5 Score=45.64 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=16.4
Q ss_pred hhhhhhccCCCCCcchh-hHH
Q 003944 106 EQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~ 125 (784)
-++.-|.||||||||-+ -.|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 45777999999999988 554
No 159
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=65.86 E-value=1.4 Score=46.38 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=17.1
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ ..|
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 456778999999999988 554
No 160
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=65.56 E-value=2.2 Score=50.98 Aligned_cols=52 Identities=27% Similarity=0.383 Sum_probs=36.3
Q ss_pred CChh-HHHHHHHHHHHhhhHHhHhHhhhh-HHHHhhhhHhhhhhhccCCCCCcchh
Q 003944 69 HDPE-IERYKAEIKRLQESEAEIKALSVN-YAALLKEKEEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 69 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~NGSgKsni 122 (784)
|.++ |..|+. ++..+..--|=|+.-+ |-.|+..+++|-.=++|+-||||+--
T Consensus 135 Y~~~~~~~Y~~--~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~ 188 (770)
T 1w9i_A 135 YTQEMVDIFKG--RRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTEN 188 (770)
T ss_dssp CSHHHHHHHTT--CCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHH
T ss_pred CCHHHHHHhcC--CCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHH
Confidence 4444 677764 2233333344455433 88999999999999999999999854
No 161
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=65.39 E-value=5.9 Score=45.79 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=12.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 280 TEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 280 ~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
..+...+...+.+....+..|.+.+. ++..|..+....+.+-..|..+..+++++...+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~ 398 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQD-----MILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE 398 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----C----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555543222 44444444444444444455445444444444443
No 162
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=65.24 E-value=21 Score=29.67 Aligned_cols=56 Identities=29% Similarity=0.372 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVA 338 (784)
Q Consensus 278 Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~ 338 (784)
-+..|++++..++.+|.+|++.+.-+ +...+.|..++-.++-+..-|...+..|++
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk-----~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALK-----NKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----cccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 56778899999999999999988621 124455555555565555555555554443
No 163
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=65.13 E-value=2 Score=40.65 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=18.3
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+||+|||||-+ -.+.-.||
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 345899999999999 77666565
No 164
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=65.03 E-value=2 Score=42.21 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=17.2
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+||+|||||-+ -.+.--||
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999 55443455
No 165
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=64.34 E-value=63 Score=27.06 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLEREL 519 (784)
Q Consensus 467 I~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erle~El 519 (784)
...++.++..++..++....+-.....++..+...++ ..|..+..++..+
T Consensus 16 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld---~KI~eL~elrq~L 65 (72)
T 3cve_A 16 NKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD---GKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHH
Confidence 3445566666666666666555555555555533333 3344444444333
No 166
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=64.32 E-value=2.1 Score=42.12 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=16.5
Q ss_pred hhhhccCCCCCcchh-hHHHHhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L 129 (784)
+.-+.||||||||-+ -.+.--+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 345899999999998 6555444
No 167
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=64.18 E-value=1.8 Score=45.00 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=13.7
Q ss_pred hhccCCCCCcchh-hHHH
Q 003944 110 RLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~ 126 (784)
-|.||||||||-+ .++.
T Consensus 6 ~lvG~nGaGKSTLln~L~ 23 (270)
T 3sop_A 6 MVVGQSGLGKSTLVNTLF 23 (270)
T ss_dssp EEEESSSSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 3789999999998 6533
No 168
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=64.01 E-value=72 Score=27.59 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 556 HSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 556 ~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~ 590 (784)
.++..+.++..+|..|..........|+.|+..+.
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~~Q 116 (118)
T 3uul_A 82 EIQEQMTLLNARWEALRVESMERQSRLHDALMELQ 116 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777888888888888888889998887664
No 169
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.96 E-value=20 Score=30.01 Aligned_cols=30 Identities=23% Similarity=0.175 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 315 LKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 315 Lq~eieeL~kei~eLe~ei~eLe~eLe~~~ 344 (784)
....|..+++++.+++.+|.+|..++...+
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333455555555555556666666655544
No 170
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=63.59 E-value=1.8e+02 Score=32.72 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003944 394 SERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 394 ~e~~ka~~EL~rLr~eL~e~E~ 415 (784)
.++...+.||.|++....+...
T Consensus 9 ~~la~yq~elarvqkana~aka 30 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKA 30 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544433
No 171
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=62.89 E-value=81 Score=27.82 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 470 SKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 470 l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
.-.++..++.++..+..++.....++..+..+++++
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555444
No 172
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=62.87 E-value=67 Score=30.40 Aligned_cols=56 Identities=9% Similarity=0.126 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 533 LKNADQRAEVSRSEKEEILVKLSHS---EKMLAEGKGRANKLEEDNAKLRLAVEQSMTR 588 (784)
Q Consensus 533 Lkeak~eie~l~~Eleel~ekL~~l---E~~l~dlK~ei~kL~~eie~L~kaLdkAl~r 588 (784)
+..++..+..+...+..++.+|+.+ .-.|..++..+..++.|+...++.+++|..-
T Consensus 71 ~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~A 129 (158)
T 3tul_A 71 TDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDA 129 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666665544 4467777777888999999999988888653
No 173
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=62.73 E-value=2.1 Score=42.63 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.8
Q ss_pred hhhhccCCCCCcchh-hHHH
Q 003944 108 ISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~ 126 (784)
+.-|+||+|||||-| ..++
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 455899999999999 7655
No 174
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=62.16 E-value=5.5 Score=39.80 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=14.1
Q ss_pred HhhhhhhccCCCCCcchh
Q 003944 105 EEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni 122 (784)
..+..-+.||+|||||=+
T Consensus 75 ~g~~~~i~g~TGsGKTt~ 92 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQ 92 (235)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCEEEEEeCCCCCcHHh
Confidence 345667899999999954
No 175
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=61.59 E-value=50 Score=28.36 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=20.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 467 I~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
+..+...|..+..++..+..+......++..|....-.+
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~L 68 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLAL 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555566666666665555555555555554433333
No 176
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.50 E-value=73 Score=29.21 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003944 473 IIDGLNNKLANCMRTIE 489 (784)
Q Consensus 473 qieeLkeeLe~l~~eLe 489 (784)
.|+.|+.+++.+..+++
T Consensus 16 ~Ie~Lkreie~lk~ele 32 (120)
T 3i00_A 16 LIERLYREISGLKAQLE 32 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 177
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=61.47 E-value=2.3 Score=46.15 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=19.7
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
.+.=++||||||||-+ -+++-.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccC
Confidence 3888999999999998 776554443
No 178
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=60.41 E-value=1.9e+02 Score=32.62 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 554 LSHSEKMLAEGKGRANKLEEDNAKLRLAVE 583 (784)
Q Consensus 554 L~~lE~~l~dlK~ei~kL~~eie~L~kaLd 583 (784)
|...++++.+-...+..-..+...+.++|.
T Consensus 75 lakY~~~~AeY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 75 LAKYQKDLADYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433333334444554444443
No 179
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=60.03 E-value=2.9 Score=39.74 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=17.4
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+||+|||||-+ -.+.-.||
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999 66554555
No 180
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=59.66 E-value=2.8 Score=42.89 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=17.2
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.=+.||+|||||-+ -.+.-.+|
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhcCC
Confidence 34799999999999 76655555
No 181
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=59.52 E-value=2.9 Score=43.36 Aligned_cols=22 Identities=27% Similarity=0.138 Sum_probs=16.9
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.=|.||||+|||-+ -+|.-.++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 34899999999999 77655443
No 182
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=59.42 E-value=2.6 Score=47.41 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=23.7
Q ss_pred hHhHhhhhHHHH-hhhhHhhhhhhccCCCCCcchh-hH
Q 003944 89 EIKALSVNYAAL-LKEKEEQISRLNGEYGLLKQNL-DA 124 (784)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~~~~~~~~g~NGSgKsni-d~ 124 (784)
+++.|++.|..+ |.=+.-.+.-|.||||||||-+ -.
T Consensus 120 ~~~nl~~~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~ 157 (460)
T 2npi_A 120 YIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRT 157 (460)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCEEEEESTTSSHHHHHHH
T ss_pred hhhhhhehhhcCceEeCCCCEEEEECCCCCCHHHHHHH
Confidence 455566655321 2223557788999999999998 44
No 183
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=58.62 E-value=2.9 Score=40.77 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=17.6
Q ss_pred hhhhccCCCCCcchh-hHHHHhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L 129 (784)
+.=|+||+|||||-+ ..+.-.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 455899999999999 8766544
No 184
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=58.62 E-value=3 Score=38.49 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=17.5
Q ss_pred hhhccCCCCCcchh-hHHHHhhhc
Q 003944 109 SRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
.-|+||.|||||-+ ..+ ..+|.
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTC
T ss_pred EEEECCCCCCHHHHHHHH-HHCCC
Confidence 34799999999999 776 66663
No 185
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=58.60 E-value=3.1 Score=40.43 Aligned_cols=24 Identities=33% Similarity=0.213 Sum_probs=18.8
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.+.=|+||+|||||-+ -.+.-.||
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3567999999999999 76655554
No 186
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=58.50 E-value=2.7 Score=46.66 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=19.8
Q ss_pred hHhhhhhhccCCCCCcchh-hHHHHhh
Q 003944 104 KEEQISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
+...+.=++||||||||-+ -+++-.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3455778999999999998 7765433
No 187
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=58.50 E-value=59 Score=29.02 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 273 DKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 273 ek~~~Ei~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
++.......|-+|-..+.=+|+-|.+.+...+. .+.+++++..+..+++..++..++.|..++..++..+.
T Consensus 12 rKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE-----~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 12 KKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEE-----QLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555553333 55566666666666666677777777777766665543
No 188
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=58.31 E-value=1.8 Score=46.09 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=24.0
Q ss_pred hHhHhhhhHHH---Hhh-----hhHhhhhhhccCCCCCcchh-hH
Q 003944 89 EIKALSVNYAA---LLK-----EKEEQISRLNGEYGLLKQNL-DA 124 (784)
Q Consensus 89 ~~~~~~~~~~~---~~~-----~~~~~~~~~~g~NGSgKsni-d~ 124 (784)
+++.|||.|.. .|+ =+.-++.-|.||||||||-+ -.
T Consensus 55 ~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~l 99 (306)
T 3nh6_A 55 EFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRL 99 (306)
T ss_dssp EEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHH
T ss_pred EEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHH
Confidence 35566666631 122 23556788999999999988 44
No 189
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.84 E-value=1.1e+02 Score=27.81 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 519 LALAREESAKLSEYLKNADQRAEVSRS 545 (784)
Q Consensus 519 l~~LreEie~L~~eLkeak~eie~l~~ 545 (784)
+.+|+.++..|...|..+..+++.+.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444
No 190
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=57.65 E-value=2.9 Score=45.48 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=19.9
Q ss_pred HhhhhhhccCCCCCcchh-hHHHHhhh
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.-.+.-++||||||||-+ .+++-.+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 345778999999999998 77655443
No 191
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=57.60 E-value=2.9 Score=45.44 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=17.1
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~i 61 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLI 61 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 456778999999999988 554
No 192
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=57.53 E-value=3 Score=40.72 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=19.0
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhh
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
-.+.-++||||||||-+ ..+.-.|
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35788999999999998 6655444
No 193
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=57.47 E-value=39 Score=28.85 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=22.7
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 003944 272 KDKTSIEITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 272 ~ek~~~Ei~~L~~EL~ele~EL~~LqeeL~ 301 (784)
++.+..++..+...+..++.+|++|++++.
T Consensus 49 LKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 49 LKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 455567788888888888888888888775
No 194
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=57.34 E-value=40 Score=29.66 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 003944 571 LEEDNAKLRLAVE 583 (784)
Q Consensus 571 L~~eie~L~kaLd 583 (784)
|.-+|..|++-|+
T Consensus 77 Le~EIatYrkLLE 89 (95)
T 3mov_A 77 LDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc
Confidence 5556777776663
No 195
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=57.17 E-value=94 Score=26.73 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 556 HSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 556 ~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl~ 590 (784)
.+...+.++..+|..|...+..-...|+.|+..+.
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~Q 116 (119)
T 3uun_A 82 EVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888888888899998887654
No 196
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=57.16 E-value=3 Score=45.41 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=16.9
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~i 49 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLML 49 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHH
Confidence 446777999999999988 554
No 197
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=56.96 E-value=34 Score=29.20 Aligned_cols=39 Identities=33% Similarity=0.475 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 375 keeLE~~Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~ 413 (784)
...|+.++..++..+++.+.+...+..|+.++-..+.-+
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K 60 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 347777788888888888877777778877777666554
No 198
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=56.93 E-value=91 Score=26.50 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=20.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 467 I~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
+..+...+..+..++..+..++.....++..|-...-.+
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~L 66 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMAL 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566666666665555555555555554433333
No 199
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=56.92 E-value=3.5 Score=38.34 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=17.3
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.=|+||.|||||-+ ..+.-.||
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999 76655555
No 200
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=56.59 E-value=78 Score=26.17 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 472 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEA 511 (784)
Q Consensus 472 eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa 511 (784)
.++++++.....-...+...+.++..|.+.+..++.+++.
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555554555555555566666666555555544
No 201
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=56.25 E-value=3.5 Score=40.14 Aligned_cols=20 Identities=25% Similarity=0.021 Sum_probs=16.0
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
.+.-|.||||||||-+ -.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 4667899999999998 5544
No 202
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=56.11 E-value=3.8 Score=40.35 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.8
Q ss_pred hccCCCCCcchh-hHHHH
Q 003944 111 LNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 111 ~~g~NGSgKsni-d~~~f 127 (784)
|+||.||||+-| ..++.
T Consensus 6 i~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 6 ISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 799999999999 87653
No 203
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=55.77 E-value=61 Score=27.57 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003944 497 NLQTALGQYFAEIEAKGHLEREL 519 (784)
Q Consensus 497 nLq~eLeqlq~eiEa~erle~El 519 (784)
.++..+.+.+.+++++.+-+.+|
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL 37 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455666666666655555554
No 204
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=55.66 E-value=3.2 Score=45.17 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=16.8
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~i 49 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTI 49 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHH
Confidence 446777999999999988 554
No 205
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=55.66 E-value=6 Score=47.44 Aligned_cols=52 Identities=31% Similarity=0.441 Sum_probs=35.4
Q ss_pred CChh-HHHHHHHHHHHhhhHHhHhHhhhh-HHHHhhhhHhhhhhhccCCCCCcchh
Q 003944 69 HDPE-IERYKAEIKRLQESEAEIKALSVN-YAALLKEKEEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 69 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~NGSgKsni 122 (784)
|.++ |..|+. ++..+..--|=|+.-+ |-.|+..+++|-.=++|+-||||+--
T Consensus 134 Y~~~~~~~Y~g--~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~ 187 (783)
T 4db1_A 134 YTPEVVAAYRG--KKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVN 187 (783)
T ss_dssp SSHHHHHHHTT--CCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred CCHHHHHHhcC--CCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchH
Confidence 4444 677753 1223333334454433 88999999999999999999999753
No 206
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=55.65 E-value=3.7 Score=41.13 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=17.7
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+||+|||||-+ ..+.-.||
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999 65444466
No 207
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=55.48 E-value=87 Score=26.82 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 277 IEITEMRKELNGKLSELRRLQMELNRRED-GDANDVVENLKRVVATLEKENNSLKMEKTELVA 338 (784)
Q Consensus 277 ~Ei~~L~~EL~ele~EL~~LqeeL~~~e~-e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~ 338 (784)
-++..+..+|..++.++..|+..+..-.. ......+..+...+..++.++..+-....+|++
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888888888888888863221 112356777788888888888777777776644
No 208
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=55.38 E-value=3.7 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.7
Q ss_pred hhhhhccCCCCCcchh-hHHHHhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
++.-|.||||||||-+ .+|.-.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 6788999999999999 7665433
No 209
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=55.24 E-value=2.7 Score=48.23 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=15.8
Q ss_pred hhhhhhccCCCCCcchh-hHH
Q 003944 106 EQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~ 125 (784)
-+|.-|.||||||||-+ -.+
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL 45 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKIL 45 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 35667999999999988 443
No 210
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=55.01 E-value=3.4 Score=45.16 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=24.1
Q ss_pred hHhHhhhhHHH------Hhh-----hhHhhhhhhccCCCCCcchh
Q 003944 89 EIKALSVNYAA------LLK-----EKEEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 89 ~~~~~~~~~~~------~~~-----~~~~~~~~~~g~NGSgKsni 122 (784)
+++.|++.|.. .|+ =..-++.-|.||||||||-+
T Consensus 26 ~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTL 70 (366)
T 3tui_C 26 KLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTL 70 (366)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHH
T ss_pred EEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHH
Confidence 46677777731 222 24567888999999999977
No 211
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=54.67 E-value=5.2 Score=48.02 Aligned_cols=130 Identities=15% Similarity=0.055 Sum_probs=73.2
Q ss_pred CChh-HHHHHHHHHHHhhhHHhHhHhhhh-HHHHhhhhHhhhhhhccCCCCCcchh-hHH---HHhhhcccc--------
Q 003944 69 HDPE-IERYKAEIKRLQESEAEIKALSVN-YAALLKEKEEQISRLNGEYGLLKQNL-DAT---NAALNAFRN-------- 134 (784)
Q Consensus 69 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~NGSgKsni-d~~---~f~L~~~~~-------- 134 (784)
|.++ |..|+- ++..+..--|=|+.-+ |-.|+..+++|-.=++|+-||||+-- =-| +++++.+..
T Consensus 119 Y~~~~~~~Y~g--~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~ie~~i 196 (795)
T 1w7j_A 119 YGEDIINAYSG--QNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKV 196 (795)
T ss_dssp CSHHHHHHHTT--CCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHTCCSSSSCHHHHH
T ss_pred CCHHHHHHHcC--CCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHhhcCCCCccchHHHH
Confidence 4444 677754 2233333334455433 88999999999999999999999854 111 122222111
Q ss_pred -------------c------ccccccCCCcccCCCC------------CCCCCcccccccccCCCCccceeccCCccchh
Q 003944 135 -------------G------NSKASSNGINIPKGSG------------DLSPSRQHKLTAQVKNRHAGHQLQNGFSKQDG 183 (784)
Q Consensus 135 -------------~------~~ra~~~~dli~~~~~------------~~~p~r~~k~~~~~~~~~s~~~~~Ng~~~~~~ 183 (784)
+ .+|--+...+-|+..+ .+| |-+.....+-||+--||.+.|.+..+.
T Consensus 197 l~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKS--RVv~q~~gERNfHIFYqLlag~~~~~~ 274 (795)
T 1w7j_A 197 LASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKS--RVVFQAEEERNYHIFYQLCASAALPEF 274 (795)
T ss_dssp HHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGG--GGTCCCTTCCSBHHHHHHHHTTTSGGG
T ss_pred HHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeeceEEecccc--eEeccCCCCCchHhHHHHHcCCCHHHH
Confidence 1 1233333333343221 111 777666555678765778888655444
Q ss_pred hchhhhccCCccccccccccch
Q 003944 184 VSNGSHALQTEVVQSSKMQGKE 205 (784)
Q Consensus 184 ~~~l~~~~i~p~gyn~vmqgd~ 205 (784)
..+.-. .|+.|...-||+.
T Consensus 275 ~~l~L~---~~~~y~yl~~~~~ 293 (795)
T 1w7j_A 275 KTLRLG---NANYFHYTKQGGS 293 (795)
T ss_dssp GGGCCC---CTTTSHHHHTTSC
T ss_pred HHccCC---ChHhCccccCCCC
Confidence 433222 3778887778764
No 212
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=54.41 E-value=3.3 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=18.0
Q ss_pred HhhhhhhccCCCCCcchh-hHHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f 127 (784)
.-++.-++||||||||-+ -+++-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHh
Confidence 445778999999999988 65543
No 213
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=54.20 E-value=1.4e+02 Score=32.10 Aligned_cols=150 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 429 EELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAE 508 (784)
Q Consensus 429 ~EL~~~~e~lr~eL~~lEreLk~l~~~~e~l~~~n~~eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~e 508 (784)
..|......+...+...+.....+...+..+ -..+......++.....+...+......+..|+.++++++.+
T Consensus 119 ~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F-------~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~ 191 (346)
T 2nrj_A 119 ETLKEGITDLRGEIQQNQKYAQQLIEELTKL-------RDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGS 191 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHH
Q ss_pred HHHHHHH--------------------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003944 509 IEAKGHL--------------------------ERELALAREESAKLSEYL---KNADQRAEVSRSEKEEILVKLSHSEK 559 (784)
Q Consensus 509 iEa~erl--------------------------e~El~~LreEie~L~~eL---keak~eie~l~~Eleel~ekL~~lE~ 559 (784)
+.....+ +.++..+..++..+...+ ..+...+..+...+..+...+.....
T Consensus 192 I~~~~~~i~~~~~~~~g~~i~~~i~Ggi~a~~a~k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~~~I~~Ai~ 271 (346)
T 2nrj_A 192 VNYYKQLESDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAIN 271 (346)
T ss_dssp GCGGGCCC--CCGGGTSCEEEEEETTTEEEEEEGGGHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 560 MLAEGKGRANKLEEDNAKLRLAVEQS 585 (784)
Q Consensus 560 ~l~dlK~ei~kL~~eie~L~kaLdkA 585 (784)
-+..+...|..+..++..|-.+++++
T Consensus 272 al~~l~~~W~~m~~~~~~l~~~I~~~ 297 (346)
T 2nrj_A 272 ALTYMSTQWHDLDSQYSGVLGHIENA 297 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
No 214
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=53.95 E-value=3.6 Score=44.98 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=16.9
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~i 57 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMI 57 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHH
Confidence 456778999999999988 554
No 215
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=53.91 E-value=3.6 Score=44.92 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=16.8
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~i 49 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMI 49 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHH
Confidence 445777999999999988 554
No 216
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=53.72 E-value=3.4 Score=44.96 Aligned_cols=20 Identities=25% Similarity=0.208 Sum_probs=16.2
Q ss_pred HhhhhhhccCCCCCcchh-hH
Q 003944 105 EEQISRLNGEYGLLKQNL-DA 124 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~ 124 (784)
.-++.-|.||||||||-+ -.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~ 49 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRC 49 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHH
Confidence 346778999999999988 44
No 217
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=53.33 E-value=1.3e+02 Score=33.08 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003944 311 VVENLKRVVATLEKENNSLK 330 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe 330 (784)
++..|+..+..++..+..|+
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~ 125 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLK 125 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 44455554444444333333
No 218
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=53.15 E-value=3.8 Score=45.01 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=16.6
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~i 49 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMI 49 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHH
Confidence 446778999999999988 443
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=53.09 E-value=3.1 Score=44.67 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=16.0
Q ss_pred hHhhhhhhccCCCCCcchh
Q 003944 104 KEEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni 122 (784)
..-.+.-|.||||||||-+
T Consensus 127 ~~g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp CSSEEEEEECCTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3456788999999999987
No 220
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=52.91 E-value=3.3 Score=44.30 Aligned_cols=22 Identities=14% Similarity=-0.023 Sum_probs=17.1
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-.+.-++||||||||-+ -++.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 345777999999999987 5543
No 221
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=52.90 E-value=2.8e+02 Score=30.95 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=19.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 466 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQ 504 (784)
Q Consensus 466 eI~~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeq 504 (784)
+...+++.+++.+.++..+...+.+.+..++....+...
T Consensus 350 e~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~ 388 (602)
T 1cii_A 350 EWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKH 388 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555444444444333
No 222
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=52.81 E-value=3.5 Score=43.33 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=24.1
Q ss_pred hHHHHhhhhHhhhhhhccCCCCCcchh-hHH
Q 003944 96 NYAALLKEKEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 96 ~~~~~~~~~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
|...++.....++.-|.||||||||-+ -++
T Consensus 159 gv~~lf~~l~geiv~l~G~sG~GKSTll~~l 189 (301)
T 1u0l_A 159 GIEELKEYLKGKISTMAGLSGVGKSSLLNAI 189 (301)
T ss_dssp THHHHHHHHSSSEEEEECSTTSSHHHHHHHH
T ss_pred CHHHHHHHhcCCeEEEECCCCCcHHHHHHHh
Confidence 566677777778889999999999987 444
No 223
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=52.70 E-value=2.8e+02 Score=30.93 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=12.2
Q ss_pred CCCCChhHHHHHHHHH
Q 003944 66 ESPHDPEIERYKAEIK 81 (784)
Q Consensus 66 ~~~~~~~~~~~~~~~~ 81 (784)
|||..+.||+--.||-
T Consensus 41 ~~~~~~~~~~~~~~~~ 56 (602)
T 1cii_A 41 DSPTRSDIEKRDKEIT 56 (602)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCchhhHHHhhhHHH
Confidence 7888888887666664
No 224
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=52.64 E-value=4.4 Score=40.78 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=14.8
Q ss_pred hhccCCCCCcchh-hHHHH
Q 003944 110 RLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f 127 (784)
=|.||||+|||-+ -++.-
T Consensus 53 ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 53 LLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4899999999998 66544
No 225
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=52.53 E-value=2.7 Score=45.47 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=16.6
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~i 46 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELI 46 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHH
Confidence 345777999999999988 554
No 226
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=52.52 E-value=4.1 Score=47.05 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=17.8
Q ss_pred hHhhhhhhccCCCCCcchh-hHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+.-++.-|.||||||||-+ ..+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l 390 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLL 390 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 3456778999999999998 654
No 227
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=52.46 E-value=3.2 Score=41.54 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=14.3
Q ss_pred hhhhhhccCCCCCcchh
Q 003944 106 EQISRLNGEYGLLKQNL 122 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni 122 (784)
-.+.-|.||||||||-+
T Consensus 20 g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CEEEEEECSTTSCHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34667999999999987
No 228
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=52.35 E-value=16 Score=42.12 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCc
Q 003944 568 ANKLEEDNAKLRLAVEQSMTRLNRMSVDS 596 (784)
Q Consensus 568 i~kL~~eie~L~kaLdkAl~rl~~~~~~~ 596 (784)
-..++.++...++++.+|-.+|....+.+
T Consensus 435 ~~~~~~~~~~a~~~~~~~~~~l~~~~~~~ 463 (575)
T 2i1j_A 435 TRRLQEEVEDARRKQDEAAAALLAATTPQ 463 (575)
T ss_dssp -------CHHHHHHHHHHHHHHHTTSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33577777778888888888887755443
No 229
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=52.25 E-value=2.1 Score=50.67 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=24.1
Q ss_pred HHHHhhhhHhhhhhhccCCCCCcchh
Q 003944 97 YAALLKEKEEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 97 ~~~~~~~~~~~~~~~~g~NGSgKsni 122 (784)
|-.|+..+++|-.=++|+-||||+--
T Consensus 85 y~~m~~~~~nQsIiisGESGAGKTe~ 110 (697)
T 1lkx_A 85 YRSMRQSQENQCVIISGESGAGKTEA 110 (697)
T ss_dssp HHHHHHHCCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCCcEEEecCCCCCCchhh
Confidence 88999999999999999999999843
No 230
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=52.01 E-value=4.5 Score=42.93 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=18.6
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
...=|.||||+|||-+ -+|.-.+|
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456999999999999 77665443
No 231
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=51.71 E-value=8.2 Score=46.61 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=36.2
Q ss_pred CChh-HHHHHHHHHHHhhhHHhHhHhhh-hHHHHhhhhHhhhhhhccCCCCCcchh
Q 003944 69 HDPE-IERYKAEIKRLQESEAEIKALSV-NYAALLKEKEEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 69 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~NGSgKsni 122 (784)
|.++ |..|+.. +..+..--|=|+.= =|-.|+..+++|-.=++|+-||||+--
T Consensus 132 Y~~~~~~~Y~g~--~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~ 185 (837)
T 1kk8_A 132 YTDSVIAKYRGK--RKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTEN 185 (837)
T ss_dssp TSHHHHHHHTTC--CGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHH
T ss_pred CCHHHHHHhcCC--CcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhh
Confidence 4443 6777642 23333334445543 388999999999999999999999865
No 232
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=51.44 E-value=4.8 Score=38.15 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=15.3
Q ss_pred hhhhccCCCCCcchh-hHHHH
Q 003944 108 ISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f 127 (784)
+.-|+|++|||||-+ -.+.-
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 345899999999998 55433
No 233
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=51.06 E-value=3.4 Score=48.36 Aligned_cols=19 Identities=26% Similarity=0.266 Sum_probs=16.1
Q ss_pred hHhhhhhhccCCCCCcchh
Q 003944 104 KEEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni 122 (784)
.+-++.-|.||||||||-+
T Consensus 42 ~~Ge~~~liGpNGaGKSTL 60 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSL 60 (670)
T ss_dssp ETTSEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3456788999999999988
No 234
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=50.82 E-value=4.6 Score=42.76 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=14.7
Q ss_pred hhhhccCCCCCcchh-hHHH
Q 003944 108 ISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~ 126 (784)
+.=|+||||||||-+ -.++
T Consensus 6 v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 445899999999987 5544
No 235
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=50.69 E-value=5.1 Score=42.93 Aligned_cols=42 Identities=24% Similarity=0.204 Sum_probs=29.0
Q ss_pred HhHhHhhhhHHH--Hhhhh-----HhhhhhhccCCCCCcchh-hHHHHhh
Q 003944 88 AEIKALSVNYAA--LLKEK-----EEQISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 88 ~~~~~~~~~~~~--~~~~~-----~~~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
-+++.+++.|.+ +|+.. .-.+.-|.||||||||-+ ..+...+
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456677777742 44432 345677999999999999 8776544
No 236
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=50.69 E-value=3.5 Score=49.60 Aligned_cols=19 Identities=16% Similarity=0.022 Sum_probs=15.4
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
++.-|+||||||||-+ -.|
T Consensus 608 ~i~~ItGpNGsGKSTlLr~i 627 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQT 627 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH
Confidence 4666899999999988 543
No 237
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=50.67 E-value=8.5 Score=41.12 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=19.0
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
|.-+.||||||||-+ ..+...|+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 678999999999999 77666554
No 238
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=50.65 E-value=4.2 Score=46.81 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=17.7
Q ss_pred hHhhhhhhccCCCCCcchh-hHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+.-++.-+.||||||||-+ ..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l 389 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLF 389 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 3456778999999999998 654
No 239
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=50.63 E-value=3.6 Score=49.29 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=15.3
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
++.-|+||||||||-+ -.|
T Consensus 577 ~i~~I~GpNGsGKSTlLr~i 596 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQT 596 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH
Confidence 4566899999999998 544
No 240
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=50.40 E-value=4.6 Score=41.02 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=18.1
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.+.=|+||+|||||-+ -.+.-.|+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999 66544443
No 241
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=49.95 E-value=2.7 Score=45.57 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=16.7
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-.+.-|.||||||||-+ -.|
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~i 51 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRII 51 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 345777999999999988 553
No 242
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=49.67 E-value=1.3e+02 Score=26.31 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 003944 472 EIIDGLNNKLANCM 485 (784)
Q Consensus 472 eqieeLkeeLe~l~ 485 (784)
..|+.|++++....
T Consensus 23 ~~id~lke~~~q~~ 36 (94)
T 3jsv_C 23 ELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555444443
No 243
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=49.66 E-value=5.1 Score=44.65 Aligned_cols=21 Identities=33% Similarity=0.254 Sum_probs=15.9
Q ss_pred Hhhh--hhhccCCCCCcchh-hHH
Q 003944 105 EEQI--SRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~--~~~~g~NGSgKsni-d~~ 125 (784)
.-.+ .-|.||||||||-+ .++
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L 62 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTL 62 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHH
Confidence 3445 66899999999998 553
No 244
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=49.61 E-value=3.9 Score=44.01 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=16.2
Q ss_pred hhhhhccCCCCCcchh-hHHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f 127 (784)
+..-|.||||||||-+ -.+.-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999998 55443
No 245
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=49.40 E-value=6.1 Score=45.88 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=15.6
Q ss_pred hhhccCCCCCcchh-hHHHH
Q 003944 109 SRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f 127 (784)
.-+.||||||||-+ -+|.-
T Consensus 48 iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHS
T ss_pred EEEECCCCChHHHHHHHHhC
Confidence 56899999999998 77643
No 246
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=49.30 E-value=2.6 Score=52.17 Aligned_cols=128 Identities=19% Similarity=0.064 Sum_probs=69.9
Q ss_pred CChh-HHHHHHHHHHHhhhHHhHhHhhh-hHHHHhhhhHhhhhhhccCCCCCcch------------------h-h----
Q 003944 69 HDPE-IERYKAEIKRLQESEAEIKALSV-NYAALLKEKEEQISRLNGEYGLLKQN------------------L-D---- 123 (784)
Q Consensus 69 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~NGSgKsn------------------i-d---- 123 (784)
|.++ |..|+. ++..+..--|=|+.= =|-+|+..+++|-.=++|+-||||+- | +
T Consensus 107 Y~~~~~~~Y~g--~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~yLa~~~~~~~~ie~~Il~ 184 (1052)
T 4anj_A 107 YSSETIKSYQG--KSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVE 184 (1052)
T ss_dssp TSHHHHHHHTT--CCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC---CTTHHHH
T ss_pred CCHHHHHHhcC--CCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 4444 677753 122222223434432 38899999999999999999999973 2 1
Q ss_pred --HHHHhhh-ccccc---ccccccCCCcccCCCC------------CCCCCcccccccccCCCCccceeccCCccchhhc
Q 003944 124 --ATNAALN-AFRNG---NSKASSNGINIPKGSG------------DLSPSRQHKLTAQVKNRHAGHQLQNGFSKQDGVS 185 (784)
Q Consensus 124 --~~~f~L~-~~~~~---~~ra~~~~dli~~~~~------------~~~p~r~~k~~~~~~~~~s~~~~~Ng~~~~~~~~ 185 (784)
-||-|.| ....+ .+|--+...+-|+..+ .+| |-+.....+-||+--||.+.|++..+-..
T Consensus 185 snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~Ga~I~~YLLEKS--RVv~q~~gERNfHIFYqLlaGa~~~~r~~ 262 (1052)
T 4anj_A 185 ANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKS--RICVQGKEERNYHIFYRLCAGASEDIRER 262 (1052)
T ss_dssp THHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCSG--GGTCCCTTCCSBHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEEEEEeccccccC--ceeecCCCCCCcccHHHHhcCCCHHHHHH
Confidence 2344444 11222 2333344444454322 111 77776655667877577777755433322
Q ss_pred hhhhccCCcccccccccc
Q 003944 186 NGSHALQTEVVQSSKMQG 203 (784)
Q Consensus 186 ~l~~~~i~p~gyn~vmqg 203 (784)
+.-. .|+.|+..=||
T Consensus 263 l~L~---~~~~y~yL~qg 277 (1052)
T 4anj_A 263 LHLS---SPDNFRYLNRG 277 (1052)
T ss_dssp HTCC---CGGGCHHHHTS
T ss_pred cCCC---ChHhCchhcCC
Confidence 2221 35666554444
No 247
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=49.21 E-value=5.2 Score=37.58 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=18.3
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.=|+||.|||||-+ ..+.-.|+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 445899999999999 77666555
No 248
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=49.17 E-value=5.2 Score=37.39 Aligned_cols=19 Identities=21% Similarity=-0.123 Sum_probs=15.1
Q ss_pred hhhccCCCCCcchh-hHHHH
Q 003944 109 SRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f 127 (784)
.-++||.|||||-+ -.+.-
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 45799999999999 66543
No 249
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=49.08 E-value=5.2 Score=42.26 Aligned_cols=22 Identities=18% Similarity=-0.025 Sum_probs=16.7
Q ss_pred hhhhhhccCCCCCcchhhHHHH
Q 003944 106 EQISRLNGEYGLLKQNLDATNA 127 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsnid~~~f 127 (784)
-.+.-|.||||||||-+=++++
T Consensus 100 g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4567799999999998833343
No 250
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=49.05 E-value=4.1 Score=39.53 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.9
Q ss_pred hhhhhccCCCCCcchh
Q 003944 107 QISRLNGEYGLLKQNL 122 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni 122 (784)
.+.-|.||||||||-+
T Consensus 21 ~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTL 36 (220)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4667899999999988
No 251
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=49.03 E-value=5 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=17.8
Q ss_pred hHhhhhhhccCCCCCcchh-hHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+.-++.-+.||||||||-+ ..+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l 401 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLL 401 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 3456788999999999998 554
No 252
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=48.97 E-value=5.3 Score=42.27 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=15.3
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
.+.-+.||||||||-+ -.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~L 122 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKL 122 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 4666899999999998 443
No 253
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=48.94 E-value=3.2e+02 Score=30.46 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 470 SKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 510 (784)
Q Consensus 470 l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiE 510 (784)
++.+|.-|+..+...-..|..+..-+.++..++.+++..|+
T Consensus 116 Le~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 116 LRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333333333333333444333333
No 254
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=48.91 E-value=4.8 Score=46.07 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=16.5
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.|
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l 67 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKIL 67 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 345677999999999988 443
No 255
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=48.80 E-value=4.1 Score=40.18 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=15.9
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
.+.-|.||||||||-+ -.+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 4667899999999998 5443
No 256
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=48.60 E-value=3.6 Score=47.38 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=17.3
Q ss_pred hHhhhhhhccCCCCCcchh-hH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DA 124 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~ 124 (784)
+.-++.-+.||||||||-+ ..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~ 386 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINL 386 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHH
Confidence 4567788999999999987 54
No 257
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=48.48 E-value=4 Score=49.96 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=15.6
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
++.-|+||||||||-+ -.|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 4566899999999998 654
No 258
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=48.35 E-value=5.6 Score=40.76 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=14.9
Q ss_pred hhccCCCCCcchh-hHHHH
Q 003944 110 RLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f 127 (784)
=|.||||+|||-+ -+|.-
T Consensus 77 ll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 77 LLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCcChHHHHHHHHHH
Confidence 5899999999998 66544
No 259
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=48.32 E-value=4.2 Score=46.78 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=17.8
Q ss_pred hHhhhhhhccCCCCCcchh-hHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+.-++.-+.||||||||-+ ..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLI 389 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 3456788999999999998 553
No 260
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=48.30 E-value=5.7 Score=37.63 Aligned_cols=22 Identities=18% Similarity=0.073 Sum_probs=17.3
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.=|+||.|||||-+ -.+.-.||
T Consensus 8 i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34899999999999 77655554
No 261
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=48.18 E-value=4.7 Score=44.31 Aligned_cols=37 Identities=32% Similarity=0.364 Sum_probs=25.8
Q ss_pred hHhHhhhhHH----HHhh-----hhHhhhhhhccCCCCCcchh-hHH
Q 003944 89 EIKALSVNYA----ALLK-----EKEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 89 ~~~~~~~~~~----~~~~-----~~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+++.|++.|. ..|+ =..-++.-|.||||||||-+ -.|
T Consensus 21 ~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~i 67 (390)
T 3gd7_A 21 TVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67 (390)
T ss_dssp EEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHH
Confidence 4677777772 1222 24567888999999999988 543
No 262
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=47.90 E-value=4.9 Score=38.53 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=14.6
Q ss_pred hhhccCCCCCcchh-hHHH
Q 003944 109 SRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~ 126 (784)
.-|.||||||||-+ ..+.
T Consensus 32 v~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 45899999999998 6643
No 263
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=47.88 E-value=5.7 Score=43.19 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=21.1
Q ss_pred HHhhhhHhhhhhhccCCCCCcchh-hHHH
Q 003944 99 ALLKEKEEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 99 ~~~~~~~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.+......++.-|.||||+|||-+ .+++
T Consensus 208 ~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 208 PLEEALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhcCCCEEEEECCCCccHHHHHHHHh
Confidence 333344567889999999999998 7655
No 264
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=47.76 E-value=4.1 Score=47.37 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=16.2
Q ss_pred HhhhhhhccCCCCCcchh-hH
Q 003944 105 EEQISRLNGEYGLLKQNL-DA 124 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~ 124 (784)
.-++.-|.||||||||-+ -.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlki 136 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKI 136 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHH
Confidence 446778999999999987 44
No 265
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=47.53 E-value=4.2 Score=47.35 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.5
Q ss_pred HhhhhhhccCCCCCcchh
Q 003944 105 EEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni 122 (784)
.-++.-|.||||||||-+
T Consensus 102 ~Gei~~LvGpNGaGKSTL 119 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTA 119 (608)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCChHHHH
Confidence 456788999999999988
No 266
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=47.35 E-value=43 Score=31.26 Aligned_cols=13 Identities=8% Similarity=-0.233 Sum_probs=7.4
Q ss_pred hchhhhccCCccc
Q 003944 184 VSNGSHALQTEVV 196 (784)
Q Consensus 184 ~~~l~~~~i~p~g 196 (784)
.-.|-..|++.+.
T Consensus 52 I~~lr~~G~sL~e 64 (142)
T 3gp4_A 52 TRQMRRAGLSIEA 64 (142)
T ss_dssp HHHHHHTTCCHHH
T ss_pred HHHHHHcCCCHHH
Confidence 3344677777444
No 267
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=47.21 E-value=6 Score=37.70 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=18.2
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.+.-|+|++|||||-+ -.+.-.|+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3556899999999999 66555454
No 268
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=47.20 E-value=7.8 Score=47.74 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=36.4
Q ss_pred CChh-HHHHHHHHHHHhhhHHhHhHhhh-hHHHHhhhhHhhhhhhccCCCCCcchh
Q 003944 69 HDPE-IERYKAEIKRLQESEAEIKALSV-NYAALLKEKEEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 69 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~NGSgKsni 122 (784)
|.++ |..|+.. +..+..--|=|+.= =|-.|+..+++|-.=++|+.||||+--
T Consensus 109 y~~~~~~~Y~~~--~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~ 162 (995)
T 2ycu_A 109 YTEAIVEMYRGK--KRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTEN 162 (995)
T ss_dssp CSHHHHHHHTTC--CGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHH
T ss_pred CCHHHHHHhcCC--ccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhh
Confidence 4444 6777642 23333334445543 388999999999999999999999965
No 269
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=47.14 E-value=6.3 Score=37.36 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=16.8
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.-|+|+.|||||-+ -.+.-.||
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 45899999999999 66544455
No 270
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=47.09 E-value=5.6 Score=38.19 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=13.3
Q ss_pred hccCCCCCcchh-hHHH
Q 003944 111 LNGEYGLLKQNL-DATN 126 (784)
Q Consensus 111 ~~g~NGSgKsni-d~~~ 126 (784)
+.||||+|||-+ ..+.
T Consensus 10 lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 10 LIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EESSTTSSHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHh
Confidence 789999999988 6543
No 271
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=46.85 E-value=6.3 Score=37.74 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=17.2
Q ss_pred hhhhccCCCCCcchh-hHHHHh-hh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAA-LN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~-L~ 130 (784)
+.=|+||.|||||-+ -.+.-. +|
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 455899999999999 655444 35
No 272
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=46.79 E-value=5.9 Score=37.60 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=17.6
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+||.|||||-+ -.+.-.||
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 345899999999999 66555555
No 273
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=46.68 E-value=6.2 Score=37.29 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=17.8
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.=|+|+.|||||-+ ..+.-.||
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999 76655565
No 274
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=46.18 E-value=5.3 Score=38.81 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=16.6
Q ss_pred hhhhccCCCCCcchh-hHHHHhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L 129 (784)
+.-++||+|||||-+ ..+.-.+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 556899999999998 6554433
No 275
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=45.81 E-value=6.6 Score=36.96 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=14.1
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
+.=|+|+.|||||-+ ..+.-.||.
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 345899999999999 665555553
No 276
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=45.53 E-value=7 Score=40.74 Aligned_cols=23 Identities=26% Similarity=0.146 Sum_probs=17.9
Q ss_pred hhhhhccCCCCCcchh-hHHHHhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
.+.=|+||+|||||-+ -.+.-.+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 4667899999999999 7665433
No 277
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=45.53 E-value=6.8 Score=37.65 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=17.7
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-++||.|||||-+ ..+.-.||
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 445899999999999 66544466
No 278
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=44.95 E-value=3.5 Score=50.31 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=15.4
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
++.-|+||||||||=+ -.|
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i 693 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQV 693 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHH
Confidence 4667899999999988 543
No 279
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=44.52 E-value=7 Score=38.05 Aligned_cols=24 Identities=29% Similarity=0.141 Sum_probs=19.0
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
...=|+||.|+|||-+ -++...++
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556899999999999 77766554
No 280
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=44.40 E-value=5.2 Score=46.57 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=24.8
Q ss_pred HhHhhhhHHH-Hhhh-----hHhhhhhhccCCCCCcchh-hHHH
Q 003944 90 IKALSVNYAA-LLKE-----KEEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 90 ~~~~~~~~~~-~~~~-----~~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
++.|++.|.. .|.- ..-++.-|.||||||||-+ -.+.
T Consensus 360 ~~~l~~~~~~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~ 403 (607)
T 3bk7_A 360 YPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLA 403 (607)
T ss_dssp ECCEEEECSSCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred EeceEEEecceEEEecccccCCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556665532 1321 3457888999999999999 6643
No 281
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=44.23 E-value=7.2 Score=36.86 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=17.9
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.=|+||.|||||-+ -.+.-.||
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhC
Confidence 345899999999999 76655555
No 282
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=44.00 E-value=7.2 Score=36.77 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=17.9
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-++||.|||||-+ -.+.-.||
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999 66655566
No 283
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=44.00 E-value=1.7e+02 Score=25.79 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 522 AREESAKLSEYLKNADQRAEVSRSEKEEILVK--L---SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTR 588 (784)
Q Consensus 522 LreEie~L~~eLkeak~eie~l~~Eleel~ek--L---~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~r 588 (784)
|...+..|..+|.......+.+.+-+..+.++ + ..++..+.+....|..|+.++-+|...|..+-.+
T Consensus 20 L~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 20 LQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444445555555555555555555454443 2 3456777888888888999999998888877544
No 284
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=43.98 E-value=5.3 Score=45.70 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=18.0
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ -+|.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 457888999999999999 6643
No 285
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=43.68 E-value=5.2 Score=49.42 Aligned_cols=19 Identities=16% Similarity=-0.055 Sum_probs=15.5
Q ss_pred hhhhhccCCCCCcchh-hHH
Q 003944 107 QISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~ 125 (784)
++.-|+||||||||=+ -.|
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH
Confidence 4556899999999998 655
No 286
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=43.43 E-value=7.4 Score=39.14 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=16.6
Q ss_pred hhccCCCCCcchh-hHHHHhhh
Q 003944 110 RLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L~ 130 (784)
=|.||+|+|||-+ -++.-.++
T Consensus 49 ll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 49 LMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEECCTTSCHHHHHHHHHHHHT
T ss_pred EEECcCCCCHHHHHHHHHHHcC
Confidence 4899999999999 77755443
No 287
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=43.35 E-value=1.4e+02 Score=24.77 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 479 NKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 479 eeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
+..+.+.+++-..+.+-.-|+..+..+
T Consensus 46 kd~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 46 KNTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 334444444555555555554444433
No 288
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=43.20 E-value=5.3 Score=38.40 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=18.9
Q ss_pred hHhHhhhhHHH-Hhh---hhHhhhhhhccCCCCCcchh-hHH
Q 003944 89 EIKALSVNYAA-LLK---EKEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 89 ~~~~~~~~~~~-~~~---~~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+++.|++.|.+ .|. -..-...-|.||||||||-+ -++
T Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 5 NYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp ------CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTT
T ss_pred hhhhhhheeecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 45666776632 222 22223456899999999977 543
No 289
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=43.13 E-value=6.1 Score=48.73 Aligned_cols=52 Identities=27% Similarity=0.380 Sum_probs=35.5
Q ss_pred CChh-HHHHHHHHHHHhhhHHhHhHhhh-hHHHHhhhhHhhhhhhccCCCCCcchh
Q 003944 69 HDPE-IERYKAEIKRLQESEAEIKALSV-NYAALLKEKEEQISRLNGEYGLLKQNL 122 (784)
Q Consensus 69 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~NGSgKsni 122 (784)
|.++ |..|+.. +..+..--|=|+.- =|-.|+..+++|-.=++|+.||||+--
T Consensus 135 y~~~~~~~Y~~~--~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~ 188 (1010)
T 1g8x_A 135 YTQEMVDIFKGR--RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTEN 188 (1010)
T ss_dssp CSHHHHHHHTTC--CTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHH
T ss_pred CCHHHHHHhcCC--CccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchH
Confidence 4444 6777642 22222333444443 388999999999999999999999854
No 290
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=43.12 E-value=7.1 Score=37.12 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=18.6
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
+.-|+||.|||||-+ ..+.-.||.
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 556899999999999 665555653
No 291
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=43.10 E-value=1.3e+02 Score=26.42 Aligned_cols=31 Identities=10% Similarity=0.223 Sum_probs=15.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 468 QKSKEIIDGLNNKLANCMRTIEAKNVELLNL 498 (784)
Q Consensus 468 ~~l~eqieeLkeeLe~l~~eLe~~n~El~nL 498 (784)
..+...+..+..++..+..+......++..|
T Consensus 40 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 70 (95)
T 3mov_A 40 DNSRRMLTDKEREMAEIRDQMQQQLNDYEQL 70 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554444444444444
No 292
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=43.01 E-value=1.6e+02 Score=25.26 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 003944 470 SKEIIDGLNNKL 481 (784)
Q Consensus 470 l~eqieeLkeeL 481 (784)
...++..++..+
T Consensus 19 ~eeel~~lke~l 30 (89)
T 3bas_A 19 QLKQMDKMKEDL 30 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 293
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=42.90 E-value=1.7e+02 Score=25.65 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=53.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHhHHHH
Q 003944 213 EEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSE 292 (784)
Q Consensus 213 e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~ele~E 292 (784)
+++...|-+++-..|.-+..=.+-+..-...+...-+.+++...++...+...++--.+.+........|.+..--++++
T Consensus 19 ~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene 98 (114)
T 2xzr_A 19 ENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENE 98 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455555777777777777777777777777777777777777777776665554443444444455555555555555
Q ss_pred HHHHHH
Q 003944 293 LRRLQM 298 (784)
Q Consensus 293 L~~Lqe 298 (784)
+.++..
T Consensus 99 ~ar~kk 104 (114)
T 2xzr_A 99 IARIKK 104 (114)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 294
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=42.77 E-value=5.4 Score=39.33 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=13.7
Q ss_pred hhhhhccCCCCCcchh
Q 003944 107 QISRLNGEYGLLKQNL 122 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni 122 (784)
.+.-+.||||||||-+
T Consensus 24 ~~~~i~G~~GsGKTtl 39 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIF 39 (247)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4566899999999998
No 295
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.34 E-value=1.8e+02 Score=32.32 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 310 ~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~ 343 (784)
+.+-++-.....+..++..|+.+.+.+..+|..+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555555555566655555543
No 296
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.33 E-value=1.3e+02 Score=26.77 Aligned_cols=33 Identities=21% Similarity=0.086 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 472 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQ 504 (784)
Q Consensus 472 eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeq 504 (784)
+++..++.+++.+..+......++..|..+|+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554555444455555444443
No 297
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=42.17 E-value=7.6 Score=42.16 Aligned_cols=21 Identities=19% Similarity=-0.018 Sum_probs=15.6
Q ss_pred hhhhhccCCCCCcchhhHHHH
Q 003944 107 QISRLNGEYGLLKQNLDATNA 127 (784)
Q Consensus 107 ~~~~~~g~NGSgKsnid~~~f 127 (784)
.+.-|.||||||||-+=++++
T Consensus 158 ~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 355689999999998833344
No 298
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=42.14 E-value=7.1 Score=41.05 Aligned_cols=19 Identities=26% Similarity=0.037 Sum_probs=15.6
Q ss_pred hhhccCCCCCcchh-hHHHH
Q 003944 109 SRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f 127 (784)
.=|+||||+|||-+ -++.-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999998 76655
No 299
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=42.10 E-value=8.4 Score=35.85 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=17.3
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+|+.|||||-+ -.+.-.||
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999 66544455
No 300
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=42.02 E-value=3.3e+02 Score=28.62 Aligned_cols=47 Identities=6% Similarity=0.123 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHL 515 (784)
Q Consensus 469 ~l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeqlq~eiEa~erl 515 (784)
....+++.+-+++..+..++..++..+......+.-|+.++...+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~k~~a~~af~~~~~~f~~q~~~qe~~ 75 (302)
T 2y3a_B 29 DKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKC 75 (302)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566666666666677766666666766666666666655443
No 301
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=41.80 E-value=7.5 Score=39.86 Aligned_cols=21 Identities=19% Similarity=0.006 Sum_probs=16.4
Q ss_pred hhhhhhccCCCCCcchh-hHHH
Q 003944 106 EQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~ 126 (784)
-.+.-|.||||||||-+ -.+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 45667899999999998 4443
No 302
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=41.60 E-value=5.6 Score=45.87 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=17.9
Q ss_pred hHhhhhhhccCCCCCcchh-hHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+.-++.-+.||||||||-+ ..+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l 389 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLI 389 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 4567888999999999988 543
No 303
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=41.56 E-value=8.4 Score=39.26 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=18.0
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-+.||+|||||-+ -.+.-.||
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999 76655555
No 304
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=41.49 E-value=6.6 Score=44.67 Aligned_cols=22 Identities=18% Similarity=0.016 Sum_probs=17.0
Q ss_pred hhhhhhccCCCCCcchh-hHHHH
Q 003944 106 EQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f 127 (784)
-++.=++||||||||-+ -+++-
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45677999999999987 55443
No 305
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=41.31 E-value=8.1 Score=42.21 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=18.1
Q ss_pred hhhhhccCCCCCcchh-hHHHHhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
.+.-|.||||||||-+ .++.-.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 4667999999999999 7665433
No 306
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=41.11 E-value=2e+02 Score=25.73 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.1
Q ss_pred HHHHHH
Q 003944 497 NLQTAL 502 (784)
Q Consensus 497 nLq~eL 502 (784)
+|...+
T Consensus 33 eL~~~~ 38 (107)
T 2no2_A 33 ELEDSL 38 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 307
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=41.10 E-value=6 Score=44.87 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=17.1
Q ss_pred HhhhhhhccCCCCCcchh-hHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~ 125 (784)
.-++.-|.||||||||-+ -.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 456777999999999998 553
No 308
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=40.94 E-value=5.2 Score=46.82 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=18.3
Q ss_pred hHhhhhhhccCCCCCcchh-hHHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
..-++.-+.||||||||-+ -.|+
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3467888999999999988 5543
No 309
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=40.85 E-value=1.1e+02 Score=25.62 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003944 570 KLEEDNAKLRLAVEQSMTR 588 (784)
Q Consensus 570 kL~~eie~L~kaLdkAl~r 588 (784)
.|.-+|..|++-|+.--.+
T Consensus 44 ~Le~EIatYRkLLEGEe~R 62 (74)
T 2xv5_A 44 ALDMEIHAYRKLLEGEEER 62 (74)
T ss_dssp HHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCccc
Confidence 3667788888777644333
No 310
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=40.71 E-value=7.6 Score=47.72 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=17.6
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ -.|.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 445667999999999998 6655
No 311
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=40.67 E-value=8 Score=39.91 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=17.1
Q ss_pred HhhhhhhccCCCCCcchh-hHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.-++.-|.||||||||-+ -.+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 345777999999999998 5443
No 312
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=40.56 E-value=8.8 Score=37.34 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=16.2
Q ss_pred hccCCCCCcchh-hHHHHhhh
Q 003944 111 LNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 111 ~~g~NGSgKsni-d~~~f~L~ 130 (784)
|+||.|||||-+ ..+.-.+|
T Consensus 5 l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 5 LMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EECSTTSSHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHhC
Confidence 799999999999 66555555
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=40.14 E-value=7.6 Score=36.25 Aligned_cols=25 Identities=32% Similarity=0.179 Sum_probs=19.3
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhhc
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
|+.-|+|+-|||||-+ -.+.-.||.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6677999999999999 654444663
No 314
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=39.88 E-value=1.2e+02 Score=28.72 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 308 ANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 308 ~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
..+.++..+.....+..++..++.++..|++++..+..+.+
T Consensus 71 l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQ 111 (146)
T 2xnx_M 71 ITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQ 111 (146)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33445555555666666666666677777777777655443
No 315
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=39.09 E-value=12 Score=41.48 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.7
Q ss_pred hhhhccCCCCCcchh-hHHH
Q 003944 108 ISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~ 126 (784)
+.-|.||||||||-+ -++.
T Consensus 71 ~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 667999999999998 6543
No 316
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=39.09 E-value=5 Score=38.77 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=17.2
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-++||+|||||-+ ..+.-.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 445789999999999 76655443
No 317
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.83 E-value=1.1e+02 Score=23.81 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 515 LERELALAREESAKLSEYLKNADQRAEVSRSEKEE 549 (784)
Q Consensus 515 le~El~~LreEie~L~~eLkeak~eie~l~~Elee 549 (784)
++.++..+.....+|...|+.++++|..++.+++.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666666666666666666665543
No 318
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=38.82 E-value=12 Score=39.46 Aligned_cols=20 Identities=20% Similarity=-0.024 Sum_probs=16.5
Q ss_pred hhhhccCCCCCcchh-hHHHH
Q 003944 108 ISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f 127 (784)
..=|+||+|+|||-+ -++.-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 566999999999998 76654
No 319
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=38.58 E-value=6.9 Score=42.06 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.8
Q ss_pred hhhhccCCCCCcchh
Q 003944 108 ISRLNGEYGLLKQNL 122 (784)
Q Consensus 108 ~~~~~g~NGSgKsni 122 (784)
|.-|.||||||||-+
T Consensus 133 i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQL 147 (349)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 345789999999998
No 320
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=38.33 E-value=10 Score=37.08 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=16.2
Q ss_pred hhhhccCCCCCcchhhHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNLDATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsnid~~~f~L~ 130 (784)
+.-|+|+.|||||-+=..|..||
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~lg 28 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFADLG 28 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHcC
Confidence 45589999999999833344354
No 321
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=38.16 E-value=7.1 Score=44.71 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=17.7
Q ss_pred hHhhhhhhccCCCCCcchh-hHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
..-+|.-|.||||||||-+ -++
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l 314 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARIL 314 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 3567888999999999988 543
No 322
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=38.04 E-value=10 Score=36.44 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=17.9
Q ss_pred hhhhhccCCCCCcchh-hHHHHhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
.-.=|.||+|+|||-+ -++...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 4556899999999999 7766544
No 323
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=37.85 E-value=9.5 Score=35.89 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=17.8
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+||.|||||-+ ..+.-.||
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 455899999999999 66555566
No 324
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.73 E-value=10 Score=40.00 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=17.7
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.=|.||+|+|||-+ -++.-.|.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 45899999999999 87766553
No 325
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.69 E-value=2.6e+02 Score=31.41 Aligned_cols=33 Identities=6% Similarity=-0.022 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~ 343 (784)
.+-.|-.+...+..++.+|+.+.+.+..+|-.+
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555555443
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=37.54 E-value=10 Score=36.92 Aligned_cols=20 Identities=20% Similarity=0.067 Sum_probs=16.0
Q ss_pred hccCCCCCcchh-hHHHHhhh
Q 003944 111 LNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 111 ~~g~NGSgKsni-d~~~f~L~ 130 (784)
|+||.|||||-+ ..+.-.+|
T Consensus 5 l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 5 LMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EECSTTSSHHHHHHHHHHHSS
T ss_pred EECCCCCCHHHHHHHHHHHhC
Confidence 789999999999 66545555
No 327
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=37.15 E-value=2.9e+02 Score=26.60 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 556 HSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRL 589 (784)
Q Consensus 556 ~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl~rl 589 (784)
.+...+.++...|..|......-+..|+.|+..|
T Consensus 184 ~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~~ 217 (218)
T 3edu_A 184 AIQNKEQEVSAAWQALLDACAGRRTQLVDTADKF 217 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666677777777777777777666544
No 328
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=36.82 E-value=10 Score=35.70 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=17.8
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.=|+||.|||||-+ ..+.-.|+
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 34799999999999 77766666
No 329
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=36.80 E-value=11 Score=36.81 Aligned_cols=24 Identities=21% Similarity=0.005 Sum_probs=18.6
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.+.-+.|++|||||-+ ..+.-.|+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4677899999999999 66555444
No 330
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=36.80 E-value=3e+02 Score=26.64 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~ 344 (784)
.+..|..-.+.|...+.++......|+..+....
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~ 123 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQA 123 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555555544443
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=36.47 E-value=11 Score=34.80 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=16.2
Q ss_pred hhccCCCCCcchh-hHHHHhhh
Q 003944 110 RLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L~ 130 (784)
-|+|+.|||||-+ ..+.-.||
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 4 YLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEESCTTSCHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999 66544455
No 332
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.31 E-value=1.9e+02 Score=28.03 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=42.4
Q ss_pred hhhcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHhhhhcccccHHHHHHHHHHHHh
Q 003944 209 ADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNG 288 (784)
Q Consensus 209 ~~m~e~err~i~a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~~le~~~ek~~~Ei~~L~~EL~e 288 (784)
.++||+++.++-+-..+|..+...++.++...+.++. .+-.........+..+..|+.+
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~---------------------aL~~a~~~DeakI~aL~~Ei~~ 124 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYN---------------------ALLTASSPDTAKINAVAKEMES 124 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHTSSSCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhCCCCCHHHHHHHHHHHHH
Confidence 7899999999998888888887777665554443222 2222234555566666666666
Q ss_pred HHHHHHHHHH
Q 003944 289 KLSELRRLQM 298 (784)
Q Consensus 289 le~EL~~Lqe 298 (784)
++.++....-
T Consensus 125 Lr~qL~~~R~ 134 (175)
T 3lay_A 125 LGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665554333
No 333
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=36.19 E-value=2.6e+02 Score=25.79 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=16.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhh
Q 003944 280 TEMRKELNGKLSELRRLQMELNRRE 304 (784)
Q Consensus 280 ~~L~~EL~ele~EL~~LqeeL~~~e 304 (784)
..+...+.+++.+|..++.+++..+
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777777777777776444
No 334
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=36.07 E-value=7.8 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.160 Sum_probs=18.5
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhh
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
-.+.-|+||||||||-| -++.-.|
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhh
Confidence 45678999999999988 6654433
No 335
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=36.01 E-value=2.4e+02 Score=25.21 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003944 387 KDLKETCSERDKALQELTRLKQHLIEKAQEESE 419 (784)
Q Consensus 387 ~ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe 419 (784)
..|++++.++...+.+|.-.++++.+.+..+..
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~ 67 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEV 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345666666667777777777777777665443
No 336
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=35.91 E-value=9.3 Score=42.36 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=13.2
Q ss_pred hhccCCCCCcchh-hH
Q 003944 110 RLNGEYGLLKQNL-DA 124 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~ 124 (784)
-|.||||+|||-+ ..
T Consensus 35 ~lvG~sGaGKSTLln~ 50 (418)
T 2qag_C 35 MVVGESGLGKSTLINS 50 (418)
T ss_dssp EEECCTTSSHHHHHHH
T ss_pred EEECCCCCcHHHHHHH
Confidence 6899999999988 54
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=35.84 E-value=12 Score=35.92 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=19.1
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
+.=+.||.|||||-+ ..+.-.||.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 345899999999999 777666664
No 338
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.80 E-value=2e+02 Score=24.28 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003944 489 EAKNVELLNLQTALGQY 505 (784)
Q Consensus 489 e~~n~El~nLq~eLeql 505 (784)
.+.+.-...|-..++++
T Consensus 26 NaLnvvk~DLI~rvdEL 42 (77)
T 2w83_C 26 NALNIVKNDLIAKVDEL 42 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 339
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=35.52 E-value=12 Score=36.08 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=18.1
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+||.|||||-+ ..+.-.||
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999 66655565
No 340
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=35.47 E-value=2.4e+02 Score=25.16 Aligned_cols=6 Identities=17% Similarity=0.545 Sum_probs=2.1
Q ss_pred HHHHHH
Q 003944 477 LNNKLA 482 (784)
Q Consensus 477 LkeeLe 482 (784)
|+.++.
T Consensus 40 LQ~Ei~ 45 (107)
T 2k48_A 40 LQENIT 45 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 341
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=34.97 E-value=12 Score=35.43 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=16.0
Q ss_pred hhccCCCCCcchh-hHHHHhh
Q 003944 110 RLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L 129 (784)
=|+||.|||||-+ ..+.-.|
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 4 TFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999 7655555
No 342
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=34.92 E-value=3 Score=44.46 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=21.5
Q ss_pred HHhhhhHhhhhhhccCCCCCcchh-hHHH
Q 003944 99 ALLKEKEEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 99 ~~~~~~~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
.|+.-...++.-|.||||+|||-+ -++.
T Consensus 166 ~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 166 DIIPHFQDKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp TTGGGGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred HHHhhcCCCEEEEECCCCCCHHHHHHHhc
Confidence 344555677899999999999988 6654
No 343
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=34.60 E-value=9.1 Score=44.52 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=16.3
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
+|.-|.||||||||-+ -.|.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~ 399 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLA 399 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 5678999999999988 5543
No 344
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=34.44 E-value=8.6 Score=41.43 Aligned_cols=27 Identities=19% Similarity=0.004 Sum_probs=21.3
Q ss_pred hhhhHhhhhhhccCCCCCcchh-hHHHH
Q 003944 101 LKEKEEQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 101 ~~~~~~~~~~~~g~NGSgKsni-d~~~f 127 (784)
+.=..-|+.-|.||||+|||-+ ..|.-
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445678899999999999999 66544
No 345
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=34.41 E-value=12 Score=35.58 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=19.0
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.+.-|+||.|||||-+ ..+.-.||
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999 76655566
No 346
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=34.31 E-value=13 Score=36.83 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=16.4
Q ss_pred hhccCCCCCcchh-hHHHHhhh
Q 003944 110 RLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L~ 130 (784)
=|.||.|||||-+ ..+.-.||
T Consensus 4 ~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEECCTTSCHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999 66555565
No 347
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=34.22 E-value=12 Score=39.39 Aligned_cols=19 Identities=26% Similarity=0.087 Sum_probs=15.3
Q ss_pred hhhhhhccCCCCCcchhhH
Q 003944 106 EQISRLNGEYGLLKQNLDA 124 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsnid~ 124 (784)
-.+.-++||||||||-+=+
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3567799999999999833
No 348
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.15 E-value=1.9e+02 Score=28.53 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.4
Q ss_pred hHHHHhHhhh
Q 003944 760 SQQFLSHHQR 769 (784)
Q Consensus 760 ~~~~~~~~~~ 769 (784)
..||.+..-|
T Consensus 168 l~qFY~Kv~k 177 (190)
T 4emc_A 168 LNQFYNKIAK 177 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445444433
No 349
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=33.96 E-value=12 Score=36.71 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=17.6
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.=|.||.|||||-+ ..+.-.||
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 44789999999999 77666666
No 350
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=33.85 E-value=3.9e+02 Score=27.12 Aligned_cols=64 Identities=8% Similarity=0.086 Sum_probs=31.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 003944 280 TEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNS-LKMEKTELVAALEKN 343 (784)
Q Consensus 280 ~~L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~e-Le~ei~eLe~eLe~~ 343 (784)
..+..+..++..=|...+..+...+.......+..++...+.+..++.. ....+..+...-+.+
T Consensus 9 ~~f~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~l~~~~~~f~~el~~~~~~~v~~v~~~~~~L 73 (323)
T 3edv_A 9 FQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADEL 73 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555544544444444222222235566666666666666655 244555554444444
No 351
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.70 E-value=1.6e+02 Score=32.88 Aligned_cols=38 Identities=18% Similarity=0.076 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
..+.|..+...+..++..++.++.++++++...-..+-
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 107 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLP 107 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677788888888888888899999988888766555
No 352
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=33.70 E-value=1.2e+02 Score=24.15 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q 003944 570 KLEEDNAKLRLAVE 583 (784)
Q Consensus 570 kL~~eie~L~kaLd 583 (784)
.|.-+|..|++-|+
T Consensus 39 ~Le~EIatYRkLLE 52 (59)
T 1gk6_A 39 ALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHc
Confidence 36667888887775
No 353
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=33.62 E-value=13 Score=34.27 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=18.3
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
...=|+||.|+|||-+ -++...+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 3446899999999999 77666543
No 354
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=33.52 E-value=2.8e+02 Score=25.32 Aligned_cols=32 Identities=3% Similarity=0.022 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 474 IDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 474 ieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
+...+..-+.....+......+.++...+..+
T Consensus 29 y~~eka~AE~A~~~La~~~~l~~~i~er~~~i 60 (119)
T 3etw_A 29 FNEERAQADAARQALAQNEQVYNELSQRAQRL 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444433334444444433
No 355
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=33.45 E-value=6.4e+02 Score=29.43 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHH
Q 003944 223 RAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELK 266 (784)
Q Consensus 223 ~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~~~le~Lkeel~ 266 (784)
...+..-+..+..-....++-++++...|++....-+.+..+..
T Consensus 436 ~~~l~~~~~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g 479 (704)
T 2xs1_A 436 IQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFK 479 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444555544455555555666666655555555555543
No 356
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.34 E-value=78 Score=26.76 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003944 289 KLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 289 le~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~ 343 (784)
++..|..|+..+.=.+ .+|++|...+..-+.++..|...+..|...+...
T Consensus 12 le~Ri~~LE~klAfqE-----~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 12 LEARLVELETRLSFQE-----QALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555554222 2555555555555555555555555554444433
No 357
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=33.33 E-value=13 Score=42.31 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=13.5
Q ss_pred hhhhhccCCCCCcchh
Q 003944 107 QISRLNGEYGLLKQNL 122 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni 122 (784)
.+.-|.||||||||-+
T Consensus 294 eVI~LVGpNGSGKTTL 309 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTT 309 (503)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCcccHHHH
Confidence 3555899999999988
No 358
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=33.30 E-value=13 Score=35.86 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=17.3
Q ss_pred hhhhccCCCCCcchh-hHHHHhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L 129 (784)
+.-++||+|||||-+ ..++-.|
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 445899999999998 7766544
No 359
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=33.29 E-value=13 Score=35.30 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=17.3
Q ss_pred hhccCCCCCcchh-hHHHHhhhc
Q 003944 110 RLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
-|.|+.|||||-+ -.+.-.||.
T Consensus 4 ~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEECCCccCHHHHHHHHHHhcCC
Confidence 4789999999999 666555653
No 360
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=32.94 E-value=14 Score=38.43 Aligned_cols=21 Identities=24% Similarity=0.089 Sum_probs=16.6
Q ss_pred hhhccCCCCCcchh-hHHHHhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L 129 (784)
.=|.||+|+|||-+ -++.-.+
T Consensus 52 vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHHHHh
Confidence 45899999999998 7765543
No 361
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=32.63 E-value=15 Score=37.74 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=18.3
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
..=|.||+|+|||-+ -++...+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc
Confidence 456899999999999 77666554
No 362
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=32.55 E-value=11 Score=39.68 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=18.6
Q ss_pred hHhhhhhhccCCCCCcchh-hHHHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~~f 127 (784)
..-+..-|+||+|+|||-+ -++.-
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4455677999999999998 66544
No 363
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=32.35 E-value=11 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=18.9
Q ss_pred HhhhhhhccCCCCCcchh-hHHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f 127 (784)
.-.+.-++||||||||-+ -.|+|
T Consensus 667 ~GeivaI~G~nGSGKSTLl~~il~ 690 (993)
T 2ygr_A 667 LGVLTSVTGVSGSGKSTLVNDILA 690 (993)
T ss_dssp SSSEEEEECSTTSSHHHHHTTTHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346778999999999999 77664
No 364
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=32.19 E-value=13 Score=36.19 Aligned_cols=21 Identities=14% Similarity=-0.154 Sum_probs=16.5
Q ss_pred hhccCCCCCcchh-hHHHHhhh
Q 003944 110 RLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L~ 130 (784)
=|.||.|||||-+ ..+.-.||
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 4 ILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEESTTSSHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999 66555565
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=32.16 E-value=13 Score=36.66 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=17.7
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|.||.|||||-+ -.+.-.||
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 345899999999999 66555555
No 366
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=32.01 E-value=11 Score=39.47 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=14.8
Q ss_pred hhccCCCCCcchhhHHHHhhhcc
Q 003944 110 RLNGEYGLLKQNLDATNAALNAF 132 (784)
Q Consensus 110 ~~~g~NGSgKsnid~~~f~L~~~ 132 (784)
-|.||||+|||-+=-++|.+++.
T Consensus 22 ~lvG~nG~GKSTLl~~L~g~~~~ 44 (301)
T 2qnr_A 22 MVVGESGLGKSTLINSLFLTDLY 44 (301)
T ss_dssp EEEEETTSSHHHHHHHHHC----
T ss_pred EEECCCCCCHHHHHHHHhCCCcc
Confidence 68999999999993335544433
No 367
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=31.99 E-value=15 Score=35.75 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=17.4
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+||.|||||-+ -.+.-.||
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 455899999999999 55444455
No 368
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=31.89 E-value=15 Score=35.23 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=18.2
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
..=|+||.|+|||-+ -++.-.++
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 556899999999999 77665444
No 369
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=31.87 E-value=15 Score=35.31 Aligned_cols=23 Identities=22% Similarity=-0.003 Sum_probs=17.7
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+||.|||||-+ -.+.-.||
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999 66555565
No 370
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=31.86 E-value=13 Score=34.11 Aligned_cols=19 Identities=16% Similarity=-0.008 Sum_probs=15.7
Q ss_pred hhhccCCCCCcchh-hHHHH
Q 003944 109 SRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f 127 (784)
.=|.||.|+||+-+ -+|-.
T Consensus 27 vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999999 77644
No 371
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=31.76 E-value=14 Score=39.56 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=17.3
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-++||.|||||-+ -.+.-.++
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 345799999999999 66655444
No 372
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=31.35 E-value=13 Score=45.34 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=0.0
Q ss_pred hccCCCCCcchh--hHHHHhh
Q 003944 111 LNGEYGLLKQNL--DATNAAL 129 (784)
Q Consensus 111 ~~g~NGSgKsni--d~~~f~L 129 (784)
++||||||||-+ +.+..+|
T Consensus 615 I~G~SGSGKSTLl~~~l~~~l 635 (916)
T 3pih_A 615 VTGVSGSGKSSLVMETLYPAL 635 (916)
T ss_dssp EECSTTSSHHHHHHHTHHHHH
T ss_pred EEccCCCChhhhHHHHHHHHH
No 373
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=31.34 E-value=56 Score=22.39 Aligned_cols=27 Identities=48% Similarity=0.530 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHhhhHHhHhHhhhhHHHH
Q 003944 71 PEIERYKAEIKRLQESEAEIKALSVNYAAL 100 (784)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (784)
.||--+|.||--|. .||-||-|..|||
T Consensus 2 geiaalkqeiaalk---keiaalkfeiaal 28 (33)
T 4dzn_A 2 GEIAALKQEIAALK---KEIAALKFEIAAL 28 (33)
T ss_dssp CHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 37888888887664 5899999998886
No 374
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=31.24 E-value=15 Score=39.61 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=18.9
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-++||.|||||-+ -.+.-.||
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 566899999999999 77666665
No 375
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=31.15 E-value=11 Score=36.05 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=14.6
Q ss_pred hhhhccCCCCCcchhhHHHH
Q 003944 108 ISRLNGEYGLLKQNLDATNA 127 (784)
Q Consensus 108 ~~~~~g~NGSgKsnid~~~f 127 (784)
+.-|+||.|||||-+=..|.
T Consensus 10 ~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45689999999998833333
No 376
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=31.10 E-value=12 Score=45.89 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=18.8
Q ss_pred HhhhhhhccCCCCCcchh-hHHHH
Q 003944 105 EEQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 105 ~~~~~~~~g~NGSgKsni-d~~~f 127 (784)
.-.|.-++||||||||-+ -.|+|
T Consensus 649 ~Geiv~I~G~nGSGKSTLl~~ll~ 672 (972)
T 2r6f_A 649 LGTFVAVTGVSGSGKSTLVNEVLY 672 (972)
T ss_dssp SSSEEECCBCTTSSHHHHHTTTHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346778999999999999 77664
No 377
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=31.08 E-value=21 Score=38.85 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=18.5
Q ss_pred hhhccCCCCCcchh-hHHHHhhhc
Q 003944 109 SRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
.-|.||+|||||-+ -++.-.|+.
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 55899999999999 776666663
No 378
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=31.07 E-value=15 Score=36.74 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=19.1
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.+.-+.||+|||||-+ ..+.-.|+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999 77666555
No 379
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.04 E-value=96 Score=24.91 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
.+++|+.....|..++..|..++..|..++..++.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777777766654
No 380
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=30.69 E-value=16 Score=37.39 Aligned_cols=24 Identities=25% Similarity=0.027 Sum_probs=18.1
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.-.=|.||+|+|||-+ -++.-.++
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3445899999999998 77665443
No 381
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=30.69 E-value=9.5 Score=46.84 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=25.7
Q ss_pred hHhHhhhhHHH----Hhhh-----hHhhhhhhccCCCCCcchh-hHH
Q 003944 89 EIKALSVNYAA----LLKE-----KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 89 ~~~~~~~~~~~----~~~~-----~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+++.|+|-|.- .|+. ..-++.-|.||||||||-+ -.+
T Consensus 673 ~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklL 719 (986)
T 2iw3_A 673 KVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719 (986)
T ss_dssp EEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHH
T ss_pred EEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 46777887841 2332 3456778999999999988 553
No 382
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=30.58 E-value=16 Score=35.35 Aligned_cols=23 Identities=22% Similarity=0.010 Sum_probs=18.3
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-++|+.|||||-+ ..+...|.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhH
Confidence 345799999999999 87776654
No 383
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=30.55 E-value=15 Score=34.35 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.0
Q ss_pred hhccCCCCCcchh-hHHH
Q 003944 110 RLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~ 126 (784)
-|.|++|+|||-| ..+.
T Consensus 11 ~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 11 ALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 4789999999998 6653
No 384
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=30.53 E-value=16 Score=35.77 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=17.1
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.-|.||.|||||-+ -.+.-.||
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 34789999999999 66655555
No 385
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=30.53 E-value=2.2e+02 Score=25.06 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 499 QTALGQYFAEIEAKGHLERELALAREESAKLSEYLK 534 (784)
Q Consensus 499 q~eLeqlq~eiEa~erle~El~~LreEie~L~~eLk 534 (784)
..++.++..++..++..+..+..|+++..-|..+|.
T Consensus 53 ~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe 88 (96)
T 1t3j_A 53 EEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELE 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333333344444444444444544444444333
No 386
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.49 E-value=4.9e+02 Score=28.60 Aligned_cols=11 Identities=9% Similarity=-0.061 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 003944 490 AKNVELLNLQT 500 (784)
Q Consensus 490 ~~n~El~nLq~ 500 (784)
....+..+|..
T Consensus 52 n~ts~v~~Lvk 62 (409)
T 1m1j_C 52 NSTGSIEYLIQ 62 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333334433
No 387
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=30.48 E-value=15 Score=39.28 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=17.8
Q ss_pred hhhhccCCCCCcchh-hHHHHhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L 129 (784)
+.-|+||+|||||-+ .++.-.+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 456999999999999 8876543
No 388
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=30.23 E-value=17 Score=34.24 Aligned_cols=21 Identities=19% Similarity=0.050 Sum_probs=16.1
Q ss_pred hhhccCCCCCcchh-hHHHHhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L 129 (784)
.-|+|+.|||||-+ ..+.-.|
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999 6655444
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=30.22 E-value=16 Score=37.09 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=15.5
Q ss_pred hhhhccCCCCCcchh-hHHHH
Q 003944 108 ISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f 127 (784)
+.-|+|+.|||||-+ -.+..
T Consensus 6 lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999 65444
No 390
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=30.20 E-value=3.4e+02 Score=29.74 Aligned_cols=39 Identities=23% Similarity=0.066 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 310 ~tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
...+.|..+...+..++..++.++.++++++...-..+-
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456778888888889999999999999988887765554
No 391
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.16 E-value=16 Score=38.07 Aligned_cols=22 Identities=23% Similarity=0.055 Sum_probs=18.3
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.=|.||+|+||+-+ -++.-.|+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999 88777665
No 392
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=30.10 E-value=15 Score=39.29 Aligned_cols=23 Identities=30% Similarity=0.111 Sum_probs=17.7
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-|+||.|||||-+ -.+.-.||
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 445899999999999 66655554
No 393
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=29.96 E-value=13 Score=34.44 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.3
Q ss_pred hhccCCCCCcchh-hHH
Q 003944 110 RLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~ 125 (784)
-+.|++|+|||-| -.+
T Consensus 7 ~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 7 ALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 4789999999988 654
No 394
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=29.91 E-value=5.6e+02 Score=28.60 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 003944 439 RAQILHLENVLKQT 452 (784)
Q Consensus 439 r~eL~~lEreLk~l 452 (784)
+..|.+|+..+.++
T Consensus 94 ~~dl~~Le~~l~~i 107 (461)
T 3ghg_B 94 RNSVDELNNNVEAV 107 (461)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 34445555544444
No 395
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=29.79 E-value=16 Score=38.58 Aligned_cols=18 Identities=17% Similarity=-0.021 Sum_probs=14.8
Q ss_pred hhhhhhccCCCCCcchhh
Q 003944 106 EQISRLNGEYGLLKQNLD 123 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsnid 123 (784)
-.+.-++||||||||-+=
T Consensus 104 ~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 346679999999999883
No 396
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=29.56 E-value=6e+02 Score=27.92 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003944 222 ERAAYESQTRQLRMELEQQRNKFADVQLKL 251 (784)
Q Consensus 222 ~~a~~e~ei~~l~~ELe~~~ekle~l~~~L 251 (784)
-....+..|..|+..|+.+.+....+...+
T Consensus 32 ye~~V~~~l~~L~~~l~~isn~Ts~~~~~v 61 (411)
T 3ghg_C 32 YQTKVDKDLQSLEDILHQVENKTSEVKQLI 61 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 334445555555555555554444444443
No 397
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.32 E-value=1.1e+02 Score=32.16 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=11.1
Q ss_pred cccccchhHHhhhcHHH
Q 003944 199 SKMQGKEKELADLLEEK 215 (784)
Q Consensus 199 ~vmqgd~t~~~~m~e~e 215 (784)
.|=+||+ |+.+....
T Consensus 53 ~V~~Gq~--L~~ld~~~ 67 (369)
T 4dk0_A 53 QVKKGDL--LAEIDSTT 67 (369)
T ss_dssp CCCSSCC--CEECCCHH
T ss_pred EECCCCE--EEEEcCHH
Confidence 6788888 77776553
No 398
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=29.29 E-value=18 Score=36.28 Aligned_cols=22 Identities=27% Similarity=0.150 Sum_probs=18.1
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.=|.||.|+|||-+ -++.-.++
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 34899999999999 88776655
No 399
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=28.90 E-value=3.6e+02 Score=25.09 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=8.0
Q ss_pred hhcHHHhHHHH
Q 003944 210 DLLEEKNRSLA 220 (784)
Q Consensus 210 ~m~e~err~i~ 220 (784)
.||+.++.++-
T Consensus 10 ~mt~~Rk~~Lk 20 (133)
T 1j1d_C 10 KISASRKLQLK 20 (133)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 48888877665
No 400
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=28.76 E-value=18 Score=38.46 Aligned_cols=18 Identities=28% Similarity=0.021 Sum_probs=15.0
Q ss_pred hhhhhhccCCCCCcchhh
Q 003944 106 EQISRLNGEYGLLKQNLD 123 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsnid 123 (784)
-.+.-++||||||||-+=
T Consensus 105 ~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456778999999999883
No 401
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.67 E-value=1.1e+02 Score=24.59 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
..+.|......|..++..|+.++..|..++..++.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666666665554
No 402
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.45 E-value=2.8e+02 Score=23.67 Aligned_cols=27 Identities=7% Similarity=0.160 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 472 EIIDGLNNKLANCMRTIEAKNVELLNL 498 (784)
Q Consensus 472 eqieeLkeeLe~l~~eLe~~n~El~nL 498 (784)
.+++.|+.++..+.-.++...-++..+
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444333333333333333333
No 403
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.43 E-value=82 Score=24.68 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 310 DVVENLKRVVATLEKENNSLKMEKTELVAALE 341 (784)
Q Consensus 310 ~tieeLq~eieeL~kei~eLe~ei~eLe~eLe 341 (784)
..++.|+.+..+|+.++..|..++.+|...++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777777766666666666666554
No 404
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.34 E-value=2.4e+02 Score=24.84 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=15.8
Q ss_pred HhhhcHHHhHHHH-HHHHHHHHHHHHHH
Q 003944 208 LADLLEEKNRSLA-AERAAYESQTRQLR 234 (784)
Q Consensus 208 ~~~m~e~err~i~-a~~a~~e~ei~~l~ 234 (784)
+-.+.|++|++-+ +.+.++..+|.+..
T Consensus 8 ~s~LPpeqRkkkL~~Ki~el~~ei~ke~ 35 (98)
T 2ke4_A 8 FSHLPPEQQRKRLQQQLEERSRELQKEV 35 (98)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888665 44444444444433
No 405
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=28.30 E-value=13 Score=41.46 Aligned_cols=27 Identities=22% Similarity=0.057 Sum_probs=20.5
Q ss_pred hhhhHhhhhhhccCCCCCcchh-hHHHH
Q 003944 101 LKEKEEQISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 101 ~~~~~~~~~~~~g~NGSgKsni-d~~~f 127 (784)
|.=..-|+.-|.||||||||-+ ..|.-
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4445667888999999999998 65443
No 406
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=28.23 E-value=17 Score=38.80 Aligned_cols=23 Identities=22% Similarity=-0.023 Sum_probs=17.0
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.-++||.|||||-+ -.+.-.++
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCccCHHHHHHHHHHhCC
Confidence 556899999999999 55544343
No 407
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=28.07 E-value=17 Score=34.84 Aligned_cols=24 Identities=13% Similarity=-0.080 Sum_probs=18.6
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
+.=|+|+-|||||-+ ..+.-.||.
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999 776655653
No 408
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.00 E-value=2e+02 Score=32.47 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=6.8
Q ss_pred cccchhhhh
Q 003944 728 LGFQDRIYL 736 (784)
Q Consensus 728 ~~~~~~~~~ 736 (784)
+.||.|+..
T Consensus 374 ~dyqArr~~ 382 (485)
T 3qne_A 374 TDYQSRNLE 382 (485)
T ss_dssp TTHHHHHTT
T ss_pred cCccccccc
Confidence 478888765
No 409
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=27.93 E-value=3.5e+02 Score=24.69 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 470 SKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 470 l~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
.+.++..|-.+...+ +...+.++...+..++.|
T Consensus 69 yK~eY~~L~KkYk~~---~~~Ld~eI~~qe~iI~nF 101 (119)
T 2avr_X 69 YKSQYQELASKYEDA---LKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp THHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 444555554444433 334444555665556655
No 410
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=27.65 E-value=19 Score=37.69 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=20.8
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhhhc
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
-.+.-++||.|||||-+ ..+.-.|+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35778999999999999 776666654
No 411
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.59 E-value=1.2e+02 Score=24.14 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
.++.|+.....+..++..|..++..|..++..++.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777777777777666653
No 412
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.51 E-value=3.9e+02 Score=30.11 Aligned_cols=8 Identities=38% Similarity=0.447 Sum_probs=4.9
Q ss_pred ccchhhhh
Q 003944 729 GFQDRIYL 736 (784)
Q Consensus 729 ~~~~~~~~ 736 (784)
.||.|+..
T Consensus 410 DfqarR~~ 417 (501)
T 1wle_A 410 DFQSRRLH 417 (501)
T ss_dssp THHHHHHT
T ss_pred cchhhhcC
Confidence 37766655
No 413
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=27.50 E-value=20 Score=36.32 Aligned_cols=21 Identities=29% Similarity=0.139 Sum_probs=16.5
Q ss_pred hhhccCCCCCcchh-hHHHHhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L 129 (784)
.=|.||.|+|||-+ -++.-.+
T Consensus 54 ~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 45899999999998 7775543
No 414
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.45 E-value=1.7e+02 Score=32.14 Aligned_cols=43 Identities=16% Similarity=-0.041 Sum_probs=23.3
Q ss_pred ccccchhhhhhhhc----cCCCcchhcccchhHHHhhhHHHHhHhhh
Q 003944 727 SLGFQDRIYLLAKI----LIPCPLKEIFGSWNILIQSSQQFLSHHQR 769 (784)
Q Consensus 727 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (784)
.+.||.|+..+--. +-+...-.++||+--+--.---+|-|||.
T Consensus 356 ~~Dfqa~r~~i~y~~~~~~k~~~vHtl~Gs~~av~R~i~allE~~~~ 402 (425)
T 2dq3_A 356 CEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAILENYQQ 402 (425)
T ss_dssp CTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHHHHHHHHTBC
T ss_pred ccccCcccCCeEEECCCCCeeEEEEEEeccccHHHHHHHHHHHhCCC
Confidence 36899888763221 22334447788853232333345667763
No 415
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=27.38 E-value=3.1e+02 Score=23.82 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 473 IIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 473 qieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
|..+|+.-+..+..+-...+..+..++..++..
T Consensus 26 Qk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 26 QKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555555555443
No 416
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=27.35 E-value=19 Score=37.68 Aligned_cols=22 Identities=27% Similarity=0.084 Sum_probs=16.4
Q ss_pred hhhhhhccCCCCCcchhhHHHH
Q 003944 106 EQISRLNGEYGLLKQNLDATNA 127 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsnid~~~f 127 (784)
-++.-++||||||||-+=..++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3466789999999999844343
No 417
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=27.24 E-value=18 Score=38.56 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=18.7
Q ss_pred hhhhhhccCCCCCcchh-hHHHHhh
Q 003944 106 EQISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
-.+.-++||||+|||-+ .++...+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34566899999999998 7776554
No 418
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=27.18 E-value=20 Score=35.98 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=19.0
Q ss_pred hhhhccCCCCCcchh-hHHHHhhhc
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALNA 131 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~~ 131 (784)
+.-|+||-|||||-+ ..+.-.||.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 567999999999999 665555774
No 419
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=27.15 E-value=3.6e+02 Score=24.59 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 471 KEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 471 ~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
+.++..+-.++..+ +..++.++...+..++.|
T Consensus 70 k~~y~~l~k~Y~~~---~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 70 KSQYQELASKYEDA---LKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34444444433333 344455566666666665
No 420
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=27.00 E-value=37 Score=35.57 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=15.8
Q ss_pred hhhhhccCCCCCcchh-hHHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATNA 127 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f 127 (784)
.+.-++||||+|||-+ -.+..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4666899999999998 44333
No 421
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.71 E-value=4.3e+02 Score=29.73 Aligned_cols=19 Identities=5% Similarity=-0.006 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003944 525 ESAKLSEYLKNADQRAEVS 543 (784)
Q Consensus 525 Eie~L~~eLkeak~eie~l 543 (784)
+...+..+++.++.++..+
T Consensus 124 ~~~~l~~~i~~l~~~~~~~ 142 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQL 142 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 422
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=26.60 E-value=18 Score=40.84 Aligned_cols=38 Identities=18% Similarity=0.001 Sum_probs=24.0
Q ss_pred hHhHhhhhHHHH---hh--hhHhhhhhhccCCCCCcchh-hHHH
Q 003944 89 EIKALSVNYAAL---LK--EKEEQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 89 ~~~~~~~~~~~~---~~--~~~~~~~~~~g~NGSgKsni-d~~~ 126 (784)
+++.|++.|..+ |. =..-.+.-+.||||||||-+ -.+.
T Consensus 259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~ 302 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFV 302 (525)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHH
T ss_pred ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 345566666442 21 12345667999999999999 5443
No 423
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=26.48 E-value=19 Score=37.30 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=24.7
Q ss_pred hhhHHHHhhhhHhhhhhhccCCCCCcchh-hHHHHhhh
Q 003944 94 SVNYAALLKEKEEQISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
-.||.++..-+--.+.=|.||.|+|||-+ -+|--.||
T Consensus 24 ~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 24 TKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp HHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34555533323223445789999999999 88887775
No 424
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=26.45 E-value=20 Score=35.97 Aligned_cols=23 Identities=13% Similarity=-0.154 Sum_probs=17.6
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.=|+||.|||||-+ -.+.--+|
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999 65544455
No 425
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=26.45 E-value=4.1e+02 Score=25.02 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 522 AREESAKLSEYLKNADQRAEVSRSEKEEILVK----LSHSEKMLAEGKGRANKLEEDNAKLRLAVEQS 585 (784)
Q Consensus 522 LreEie~L~~eLkeak~eie~l~~Eleel~ek----L~~lE~~l~dlK~ei~kL~~eie~L~kaLdkA 585 (784)
+..++..+..++......+..+......+... ...+...+..+...|..+...+...+..|+.|
T Consensus 144 ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w~~l~~~~~~R~~~L~~a 211 (213)
T 1cun_A 144 LLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDEN 211 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444445554444444444433333221 12345556666666777777777777777655
No 426
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=26.38 E-value=12 Score=45.32 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=0.0
Q ss_pred hccCCCCCcchh-hHHHHhh
Q 003944 111 LNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 111 ~~g~NGSgKsni-d~~~f~L 129 (784)
++||||||||-+ -.+++.+
T Consensus 528 I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 528 VTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp EECCTTSSHHHHCCCCCHHH
T ss_pred EEcCCCcCHHHHHHHHHHHH
No 427
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=26.33 E-value=11 Score=36.38 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.8
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.-+.||.|||||-+ ..+.-.|+
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 34789999999999 87766665
No 428
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=26.30 E-value=7.1e+02 Score=27.74 Aligned_cols=11 Identities=9% Similarity=0.184 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q 003944 575 NAKLRLAVEQS 585 (784)
Q Consensus 575 ie~L~kaLdkA 585 (784)
.+.+.++|+++
T Consensus 179 Ye~~QKqLeQv 189 (491)
T 1m1j_A 179 YDNIQKHLTQA 189 (491)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 45556666665
No 429
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=26.30 E-value=29 Score=34.15 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=12.6
Q ss_pred hhhhccCCCCCcchh
Q 003944 108 ISRLNGEYGLLKQNL 122 (784)
Q Consensus 108 ~~~~~g~NGSgKsni 122 (784)
|.=++||.|||||=.
T Consensus 7 i~l~tG~pGsGKT~~ 21 (199)
T 2r2a_A 7 ICLITGTPGSGKTLK 21 (199)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 345799999999987
No 430
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=26.25 E-value=20 Score=34.47 Aligned_cols=23 Identities=22% Similarity=0.030 Sum_probs=18.3
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+.=|+|+-|||||-+ ..+.-.|+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 556899999999999 77665554
No 431
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=26.07 E-value=22 Score=33.65 Aligned_cols=21 Identities=24% Similarity=0.069 Sum_probs=17.0
Q ss_pred hhhccCCCCCcchh-hHHHHhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L 129 (784)
.=|+||.|+|||-+ -++...+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999 7766544
No 432
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=26.03 E-value=21 Score=37.12 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=16.9
Q ss_pred hhhhccCCCCCcchh-hHHHHhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L 129 (784)
-.=|.||+|+|||-+ -++.-.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 445899999999998 7765533
No 433
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=25.87 E-value=4.3e+02 Score=25.05 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 522 AREESAKLSEYLKNADQRAEVSRSEKEEILVK----LSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSM 586 (784)
Q Consensus 522 LreEie~L~~eLkeak~eie~l~~Eleel~ek----L~~lE~~l~dlK~ei~kL~~eie~L~kaLdkAl 586 (784)
+..++..+..++......+..+...-..+... ...+...+..+...|..+..........|+.|+
T Consensus 147 ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~al 215 (216)
T 1u5p_A 147 LRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESL 215 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444443332222211 124555666677777777777777777776554
No 434
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=25.76 E-value=2.2e+02 Score=25.95 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=33.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 282 MRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKME 332 (784)
Q Consensus 282 L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~e 332 (784)
+..||..+-+.|+.++..+......+...-+.++..+++.+.++|..++..
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677777777654445555567777777777777777666543
No 435
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=25.72 E-value=22 Score=33.86 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=16.7
Q ss_pred hhhhccCCCCCcchh-hHHHHhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L 129 (784)
+.-|+||-|||||-+ ..+.-.|
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 345899999999999 6655444
No 436
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=25.69 E-value=18 Score=33.36 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=16.9
Q ss_pred hhhhccCCCCCcchh-hHHHHhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L 129 (784)
-.=|+||.|+|||-+ -++.-.+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 345899999999998 7665544
No 437
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.61 E-value=3.6e+02 Score=24.10 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 515 LERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSH 556 (784)
Q Consensus 515 le~El~~LreEie~L~~eLkeak~eie~l~~Eleel~ekL~~ 556 (784)
++.++...+.++..|..++.+++..++.+++|..=.=.||..
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555666666555544433334333
No 438
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.49 E-value=1.4e+02 Score=32.59 Aligned_cols=8 Identities=13% Similarity=0.235 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 003944 620 EVLDLMVR 627 (784)
Q Consensus 620 evL~Lia~ 627 (784)
+|.+-++.
T Consensus 124 ~Vf~~v~~ 131 (403)
T 4etp_A 124 DVFKEVGQ 131 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 439
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.37 E-value=1e+02 Score=24.60 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe~~~~ 345 (784)
.+++|+..+..|..++..|..++..|..++..++.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777777777766554
No 440
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=25.20 E-value=23 Score=35.20 Aligned_cols=20 Identities=30% Similarity=0.147 Sum_probs=16.1
Q ss_pred hhccCCCCCcchh-hHHHHhh
Q 003944 110 RLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L 129 (784)
=|.||.|+|||-+ -++...+
T Consensus 43 ll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 43 LLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEESCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 4899999999998 7765543
No 441
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=24.68 E-value=17 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=17.9
Q ss_pred hHhhhhhhccCCCCCcchh-hHH
Q 003944 104 KEEQISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 104 ~~~~~~~~~g~NGSgKsni-d~~ 125 (784)
+.-++.-|+||||||||-+ -.+
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll 436 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLM 436 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 4567788999999999988 543
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=24.63 E-value=18 Score=37.17 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=4.0
Q ss_pred ccchhhhh
Q 003944 729 GFQDRIYL 736 (784)
Q Consensus 729 ~~~~~~~~ 736 (784)
-|=|+.+.
T Consensus 275 ~vgD~~~d 282 (301)
T 1ltq_A 275 AIDDRTQV 282 (301)
T ss_dssp EEECCHHH
T ss_pred EeCCcHHH
Confidence 35555544
No 443
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=24.48 E-value=22 Score=39.02 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=18.0
Q ss_pred hhhhhccCCCCCcchh-hHHHHhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L 129 (784)
.+.=|+||.|||||-+ -.+...+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 4667899999999999 6655444
No 444
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=24.21 E-value=25 Score=36.68 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=14.9
Q ss_pred hhhhccCCCCCcchh-hHHHHhhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
|.-++||-|||||-+ ..+.-.||
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999 66555566
No 445
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=24.10 E-value=24 Score=40.20 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=18.8
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.+.=|.||||+|||-+ -+|.-.++
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3556899999999998 77766553
No 446
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=24.02 E-value=21 Score=33.32 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=13.8
Q ss_pred hhccCCCCCcchh-hHHH
Q 003944 110 RLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~ 126 (784)
-+.|++|+|||-| .++.
T Consensus 8 ~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 8 VIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 3789999999988 6643
No 447
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=23.69 E-value=24 Score=40.66 Aligned_cols=24 Identities=33% Similarity=0.207 Sum_probs=19.9
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
+..=|.||||+|||-+ -+|.-.+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 5778999999999999 87766554
No 448
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=23.51 E-value=23 Score=35.06 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=14.5
Q ss_pred hhccCCCCCcchh-hHHH
Q 003944 110 RLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~ 126 (784)
-|.|++|+|||-+ -+++
T Consensus 33 ~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 33 VLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 4899999999998 7755
No 449
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=23.39 E-value=19 Score=33.77 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=12.1
Q ss_pred hccCCCCCcchh-hH
Q 003944 111 LNGEYGLLKQNL-DA 124 (784)
Q Consensus 111 ~~g~NGSgKsni-d~ 124 (784)
+.|++|+|||-| -.
T Consensus 7 ivG~~gvGKStLl~~ 21 (184)
T 2zej_A 7 IVGNTGSGKTTLLQQ 21 (184)
T ss_dssp EESCTTSSHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 789999999988 54
No 450
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=23.39 E-value=24 Score=39.20 Aligned_cols=21 Identities=24% Similarity=0.047 Sum_probs=16.4
Q ss_pred hhhhhhccCCCCCcchh-hHHH
Q 003944 106 EQISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni-d~~~ 126 (784)
-.+.-++||||||||.+ -.+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 45777899999999998 4433
No 451
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.32 E-value=2.5e+02 Score=23.55 Aligned_cols=35 Identities=9% Similarity=0.061 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 471 KEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 471 ~eqieeLkeeLe~l~~eLe~~n~El~nLq~eLeql 505 (784)
...+.+|..++.-.+..++..|..+...+..++.+
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L 47 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARN 47 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544555555555555554444444
No 452
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=23.19 E-value=17 Score=33.25 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=14.1
Q ss_pred hhhccCCCCCcchh-hHHH
Q 003944 109 SRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~ 126 (784)
.=|.||.|+||+-+ -+|-
T Consensus 30 vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp EEEEEETTCCHHHHHGGGC
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 45899999999977 5543
No 453
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=23.07 E-value=26 Score=34.18 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=14.1
Q ss_pred hhhhccCCCCCcchh-hHH
Q 003944 108 ISRLNGEYGLLKQNL-DAT 125 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~ 125 (784)
+.-|+|+-|||||-+ ..+
T Consensus 14 iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 345899999999999 443
No 454
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=23.02 E-value=4.7e+02 Score=29.20 Aligned_cols=35 Identities=6% Similarity=-0.001 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003944 221 AERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQ 255 (784)
Q Consensus 221 a~~a~~e~ei~~l~~ELe~~~ekle~l~~~LeE~~ 255 (784)
+-...++..|..|+..|+.+.+....+...+...+
T Consensus 88 kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik 122 (461)
T 3ghg_B 88 QQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLK 122 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44445566666666666666665555555554433
No 455
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=22.83 E-value=27 Score=35.52 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=18.0
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.=|.||.|+|||-+ -++.-.++
T Consensus 53 vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 44899999999999 88776664
No 456
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.77 E-value=4e+02 Score=29.16 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003944 319 VATLEKENNSLKMEKTELVAALEKNRKSSN 348 (784)
Q Consensus 319 ieeL~kei~eLe~ei~eLe~eLe~~~~e~~ 348 (784)
+-.+-.+.+.+..++++|+++.....+.+.
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666667777777776666554
No 457
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=22.64 E-value=22 Score=45.03 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=14.7
Q ss_pred hhhhhccCCCCCcchh-hH
Q 003944 107 QISRLNGEYGLLKQNL-DA 124 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~ 124 (784)
++.-+.||||||||-+ ..
T Consensus 1060 e~v~ivG~sGsGKSTl~~~ 1078 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQL 1078 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4456899999999999 54
No 458
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=22.49 E-value=25 Score=34.35 Aligned_cols=22 Identities=18% Similarity=0.033 Sum_probs=17.0
Q ss_pred hhhccCCCCCcchh-hHHHHhhh
Q 003944 109 SRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 109 ~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.-|.||.|||||-+ -.+.-.||
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34789999999999 66655565
No 459
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=22.42 E-value=19 Score=39.50 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.0
Q ss_pred hhhccCCCCCcchh
Q 003944 109 SRLNGEYGLLKQNL 122 (784)
Q Consensus 109 ~~~~g~NGSgKsni 122 (784)
.-|.||||||||-+
T Consensus 181 ~~I~G~sGsGKTTL 194 (400)
T 3lda_A 181 TELFGEFRTGKSQL 194 (400)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEEcCCCCChHHH
Confidence 44689999999988
No 460
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.15 E-value=1.3e+02 Score=21.75 Aligned_cols=29 Identities=31% Similarity=0.322 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 384 KLEKDLKETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 384 ~Le~ELeele~e~~ka~~EL~rLr~eL~e 412 (784)
+|+..++++-.+...+..++.+|+.-+-+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 34445555555555556666666655543
No 461
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=22.15 E-value=1.2e+02 Score=22.83 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 311 VVENLKRVVATLEKENNSLKMEKTELVAALE 341 (784)
Q Consensus 311 tieeLq~eieeL~kei~eLe~ei~eLe~eLe 341 (784)
-+.+++...+.+++.+..|+.+++.|.+.+.
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777776654
No 462
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.00 E-value=8.5e+02 Score=27.87 Aligned_cols=99 Identities=21% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHhh
Q 003944 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQR-AQILHLENVLKQTLAKQEEFK 460 (784)
Q Consensus 382 Ie~Le~ELeele~e~~ka~~EL~rLr~eL~e~E~e~qe~ld~~sk~I~EL~~~~e~lr-~eL~~lEreLk~l~~~~e~l~ 460 (784)
+...++++++-+.+...++.+...|.+...+.+..+...-......|..|....+.-+ .-+.+.++-++.-...++.+-
T Consensus 482 l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~ 561 (592)
T 1f5n_A 482 LTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLL 561 (592)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h-hchHHHHhHHHHHHHHHHH
Q 003944 461 M-MNHSEIQKSKEIIDGLNNK 480 (784)
Q Consensus 461 ~-~n~~eI~~l~eqieeLkee 480 (784)
. .-..+...+..+|..|+..
T Consensus 562 ~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 562 KEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
No 463
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.85 E-value=3.3e+02 Score=22.23 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 003944 427 IIEELRENNEY 437 (784)
Q Consensus 427 ~I~EL~~~~e~ 437 (784)
.+.+++.+++.
T Consensus 10 il~eiRaQYE~ 20 (77)
T 3trt_A 10 AMRDVRQQYES 20 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455544433
No 464
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=21.82 E-value=26 Score=35.79 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.5
Q ss_pred hhccCCCCCcchh-hHHHHhhh
Q 003944 110 RLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L~ 130 (784)
=|.||.|+|||-+ -++.-.|+
T Consensus 71 ll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 71 SFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp EEEECTTSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999 87766664
No 465
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=21.79 E-value=2.8e+02 Score=22.72 Aligned_cols=50 Identities=26% Similarity=0.210 Sum_probs=26.8
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 003944 282 MRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKM 331 (784)
Q Consensus 282 L~~EL~ele~EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ 331 (784)
...+...+..++..|..++...-+.+..-.-..|++.++.+..++..+..
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~ 53 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKD 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777888888875222222223444555555555554444433
No 466
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=21.70 E-value=29 Score=39.34 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=16.1
Q ss_pred hhccCCCCCcchh-hHHHHhh
Q 003944 110 RLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L 129 (784)
=|.||||+|||-+ -+|.-.+
T Consensus 68 LL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 68 LLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEECSSSSSHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 4899999999999 7765443
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=21.68 E-value=25 Score=35.50 Aligned_cols=21 Identities=10% Similarity=-0.088 Sum_probs=16.5
Q ss_pred hhccCCCCCcchh-hHHHHhhh
Q 003944 110 RLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 110 ~~~g~NGSgKsni-d~~~f~L~ 130 (784)
=+.||.|+|||.. .|+.-.|+
T Consensus 62 li~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 62 VFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEESCGGGCHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999988 77765553
No 468
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=21.67 E-value=5.7e+02 Score=24.94 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=7.9
Q ss_pred hhcHHHhHHHH
Q 003944 210 DLLEEKNRSLA 220 (784)
Q Consensus 210 ~m~e~err~i~ 220 (784)
-||+.++.++-
T Consensus 10 ~mt~~Rk~~Lk 20 (180)
T 1j1e_C 10 KISASRKLQLK 20 (180)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 48888877665
No 469
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=21.56 E-value=22 Score=45.08 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=0.0
Q ss_pred hccCCCCCcchh-hHHH
Q 003944 111 LNGEYGLLKQNL-DATN 126 (784)
Q Consensus 111 ~~g~NGSgKsni-d~~~ 126 (784)
++||+|||||-| ..++
T Consensus 449 ivG~sGsGKSTll~ll~ 465 (1321)
T 4f4c_A 449 LVGSSGCGKSTIISLLL 465 (1321)
T ss_dssp EEECSSSCHHHHHHHHT
T ss_pred EEecCCCcHHHHHHHhc
No 470
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=21.53 E-value=29 Score=36.39 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=19.3
Q ss_pred hhhhhccCCCCCcchh-hHHHHhhh
Q 003944 107 QISRLNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~f~L~ 130 (784)
.-.=|.||.|+|||-+ -||.-.+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4456899999999999 88776655
No 471
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=21.50 E-value=27 Score=37.81 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=15.6
Q ss_pred hhhhhccCCCCCcchh-hHHH
Q 003944 107 QISRLNGEYGLLKQNL-DATN 126 (784)
Q Consensus 107 ~~~~~~g~NGSgKsni-d~~~ 126 (784)
.|.-+.||||||||-+ -.+.
T Consensus 62 ~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 4667889999999988 4443
No 472
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=21.29 E-value=21 Score=38.32 Aligned_cols=17 Identities=12% Similarity=0.132 Sum_probs=14.7
Q ss_pred hhhhhhccCCCCCcchh
Q 003944 106 EQISRLNGEYGLLKQNL 122 (784)
Q Consensus 106 ~~~~~~~g~NGSgKsni 122 (784)
-.+.-+.||||||||.+
T Consensus 61 G~iv~I~G~pGsGKTtL 77 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTV 77 (349)
T ss_dssp TSEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35677899999999998
No 473
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=20.36 E-value=5.8e+02 Score=24.57 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003944 292 ELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKT 334 (784)
Q Consensus 292 EL~~LqeeL~~~e~e~~~~tieeLq~eieeL~kei~eLe~ei~ 334 (784)
.+..|.+.+. ....+..|-....-|.-+......++..+.
T Consensus 56 k~~qlre~~d---~gtt~~~i~~m~~yI~llrErea~lEqkVa 95 (169)
T 3k29_A 56 KIRQLREQLD---DGTTSDAILKMKAYIKVVAIQLSEEEEKVN 95 (169)
T ss_dssp HHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666665 222334555555555555555444444443
No 474
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=20.18 E-value=32 Score=38.00 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=17.2
Q ss_pred hhhhccCCCCCcchh-hHHHHhh
Q 003944 108 ISRLNGEYGLLKQNL-DATNAAL 129 (784)
Q Consensus 108 ~~~~~g~NGSgKsni-d~~~f~L 129 (784)
-.=|.||+|+|||-+ -+|.-.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 445899999999999 7766543
No 475
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=20.16 E-value=30 Score=38.21 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=0.0
Q ss_pred hccCCCCCcchh-hHHHHhhh
Q 003944 111 LNGEYGLLKQNL-DATNAALN 130 (784)
Q Consensus 111 ~~g~NGSgKsni-d~~~f~L~ 130 (784)
++||.|||||-| -.+.-.++
T Consensus 7 i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 7 IAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEECSSSSHHHHHHHHHHHHT
T ss_pred EECcchhhHHHHHHHHHHHCC
No 476
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=20.08 E-value=46 Score=35.86 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCCCCCChhHHHHHHHHHH-HhhhHHhHhHhhhhHHHHhhhhHhhhhh---hccCCCCCcchh-hHHH
Q 003944 64 GFESPHDPEIERYKAEIKR-LQESEAEIKALSVNYAALLKEKEEQISR---LNGEYGLLKQNL-DATN 126 (784)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~NGSgKsni-d~~~ 126 (784)
|+-.|....++..+..|++ +.....+++.+--.....-......=.+ |.|++|+|||-+ -++.
T Consensus 133 ~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 133 GPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHH
Done!