Query 003945
Match_columns 784
No_of_seqs 571 out of 4998
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 14:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4E-64 8.6E-69 613.3 48.6 625 2-755 424-1101(1153)
2 PLN00113 leucine-rich repeat r 100.0 1E-37 2.2E-42 382.1 28.2 444 111-561 109-589 (968)
3 PLN00113 leucine-rich repeat r 100.0 4.2E-37 9.2E-42 376.5 29.5 441 112-560 85-564 (968)
4 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-31 3.7E-36 309.7 11.4 234 2-321 399-653 (889)
5 KOG0444 Cytoskeletal regulator 100.0 7.7E-32 1.7E-36 281.4 -5.1 365 143-540 9-380 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 8.7E-32 1.9E-36 268.3 -13.3 269 89-369 36-309 (565)
7 KOG4194 Membrane glycoprotein 100.0 1.2E-28 2.7E-33 256.3 9.3 361 121-534 53-428 (873)
8 KOG4194 Membrane glycoprotein 100.0 5.5E-29 1.2E-33 259.0 5.6 380 121-532 79-477 (873)
9 KOG0444 Cytoskeletal regulator 99.9 4.4E-30 9.6E-35 268.3 -5.8 352 122-512 9-375 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 1.3E-30 2.8E-35 260.0 -10.7 412 111-539 36-521 (565)
11 PLN03210 Resistant to P. syrin 99.9 3E-23 6.6E-28 254.5 28.1 336 161-561 556-911 (1153)
12 KOG0618 Serine/threonine phosp 99.9 6.6E-27 1.4E-31 256.4 -4.1 398 110-533 35-441 (1081)
13 KOG0618 Serine/threonine phosp 99.9 4.5E-25 9.8E-30 242.1 -7.1 371 107-510 55-487 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 2.5E-16 5.5E-21 179.7 18.4 254 143-439 203-456 (788)
15 PRK15387 E3 ubiquitin-protein 99.7 2.9E-16 6.4E-21 179.2 17.4 259 120-419 201-459 (788)
16 PRK15370 E3 ubiquitin-protein 99.7 1.4E-16 2.9E-21 183.2 11.9 122 141-279 178-299 (754)
17 KOG4237 Extracellular matrix p 99.7 6.5E-19 1.4E-23 176.7 -6.6 264 147-416 52-357 (498)
18 PRK15370 E3 ubiquitin-protein 99.6 6.5E-16 1.4E-20 177.7 12.3 222 120-368 178-399 (754)
19 cd00116 LRR_RI Leucine-rich re 99.6 1.8E-16 3.9E-21 169.3 -2.0 260 257-533 17-318 (319)
20 KOG4237 Extracellular matrix p 99.5 2E-15 4.4E-20 151.8 0.4 384 126-532 52-498 (498)
21 KOG0617 Ras suppressor protein 99.5 1.7E-15 3.8E-20 135.1 -3.6 60 489-552 140-199 (264)
22 cd00116 LRR_RI Leucine-rich re 99.5 6.8E-15 1.5E-19 157.1 0.1 58 381-438 250-317 (319)
23 KOG0617 Ras suppressor protein 99.5 1.3E-15 2.9E-20 135.8 -4.6 156 156-319 26-182 (264)
24 KOG4658 Apoptotic ATPase [Sign 99.2 1.6E-11 3.5E-16 143.9 6.3 78 142-219 546-628 (889)
25 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.3E-16 128.9 -5.7 186 338-553 79-270 (722)
26 KOG3207 Beta-tubulin folding c 98.9 2.1E-10 4.5E-15 117.8 0.7 182 331-533 143-337 (505)
27 COG4886 Leucine-rich repeat (L 98.9 2.1E-09 4.5E-14 118.3 7.5 197 314-539 97-294 (394)
28 KOG3207 Beta-tubulin folding c 98.9 2.7E-10 6E-15 117.0 -0.4 213 283-512 118-339 (505)
29 COG4886 Leucine-rich repeat (L 98.9 3.2E-09 7E-14 116.8 7.6 197 145-375 97-295 (394)
30 KOG1259 Nischarin, modulator o 98.9 5.4E-10 1.2E-14 109.0 0.9 133 334-516 284-416 (490)
31 KOG1909 Ran GTPase-activating 98.8 3.8E-10 8.2E-15 113.0 -0.9 65 469-533 236-309 (382)
32 KOG1259 Nischarin, modulator o 98.8 1.3E-09 2.8E-14 106.4 1.3 201 303-533 207-410 (490)
33 PF14580 LRR_9: Leucine-rich r 98.7 2.3E-08 5E-13 94.3 6.1 77 142-219 20-98 (175)
34 KOG1909 Ran GTPase-activating 98.7 2.4E-09 5.3E-14 107.3 -1.3 243 114-369 24-310 (382)
35 KOG0532 Leucine-rich repeat (L 98.7 1.1E-09 2.3E-14 116.1 -4.4 195 161-367 73-270 (722)
36 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.3E-13 96.5 2.4 104 118-221 17-125 (175)
37 PLN03150 hypothetical protein; 98.5 3.2E-07 6.9E-12 105.9 8.6 113 406-541 419-534 (623)
38 PRK15386 type III secretion pr 98.4 1.3E-06 2.9E-11 92.3 10.6 73 333-416 51-123 (426)
39 KOG4341 F-box protein containi 98.3 1.2E-08 2.7E-13 104.5 -8.0 275 164-442 139-440 (483)
40 KOG2120 SCF ubiquitin ligase, 98.3 7.7E-09 1.7E-13 101.2 -9.1 175 335-555 186-375 (419)
41 PLN03150 hypothetical protein; 98.2 2.3E-06 4.9E-11 98.9 8.3 108 311-418 419-528 (623)
42 PRK15386 type III secretion pr 98.2 3.6E-06 7.8E-11 89.1 8.1 134 377-553 48-187 (426)
43 KOG4341 F-box protein containi 98.2 4.7E-08 1E-12 100.3 -5.8 39 186-224 138-179 (483)
44 KOG0531 Protein phosphatase 1, 98.2 2.7E-07 5.9E-12 101.7 -1.0 77 142-219 73-150 (414)
45 KOG0531 Protein phosphatase 1, 98.1 5.7E-07 1.2E-11 99.2 0.3 241 163-419 72-319 (414)
46 PF13855 LRR_8: Leucine rich r 98.1 3.6E-06 7.9E-11 64.9 4.4 56 142-197 2-60 (61)
47 KOG2120 SCF ubiquitin ligase, 98.1 1E-07 2.2E-12 93.6 -5.7 175 241-415 187-373 (419)
48 KOG2982 Uncharacterized conser 98.0 3.5E-06 7.6E-11 83.0 3.6 232 309-562 44-287 (418)
49 KOG1859 Leucine-rich repeat pr 98.0 6.7E-08 1.4E-12 105.3 -10.1 101 335-439 165-265 (1096)
50 PF13855 LRR_8: Leucine rich r 98.0 8.1E-06 1.8E-10 63.0 4.0 57 335-391 2-59 (61)
51 KOG1859 Leucine-rich repeat pr 97.9 4.4E-07 9.4E-12 99.2 -6.6 125 163-321 164-290 (1096)
52 KOG2982 Uncharacterized conser 97.8 7E-06 1.5E-10 80.9 1.2 58 161-218 69-130 (418)
53 PF12799 LRR_4: Leucine Rich r 97.7 3.4E-05 7.4E-10 54.5 2.7 38 475-514 2-39 (44)
54 PF12799 LRR_4: Leucine Rich r 97.6 5.3E-05 1.1E-09 53.6 3.4 42 499-541 1-42 (44)
55 KOG3665 ZYG-1-like serine/thre 97.5 4.5E-05 9.7E-10 88.0 2.4 109 238-347 147-263 (699)
56 KOG1644 U2-associated snRNP A' 97.5 0.00022 4.8E-09 66.8 6.2 107 161-273 40-150 (233)
57 KOG3665 ZYG-1-like serine/thre 97.4 2.3E-05 5E-10 90.3 -1.2 98 120-218 122-229 (699)
58 COG5238 RNA1 Ran GTPase-activa 97.3 7.9E-05 1.7E-09 72.7 0.8 189 116-321 26-253 (388)
59 KOG1644 U2-associated snRNP A' 97.1 0.00079 1.7E-08 63.3 5.8 107 140-249 41-150 (233)
60 KOG4579 Leucine-rich repeat (L 97.1 1.9E-05 4.2E-10 69.0 -4.7 77 142-218 54-132 (177)
61 COG5238 RNA1 Ran GTPase-activa 97.0 0.00015 3.3E-09 70.8 -0.4 59 474-532 185-252 (388)
62 KOG4579 Leucine-rich repeat (L 96.8 8.4E-05 1.8E-09 65.1 -3.7 102 143-251 29-135 (177)
63 KOG1947 Leucine rich repeat pr 96.7 0.00021 4.5E-09 81.0 -2.4 110 285-394 187-308 (482)
64 KOG1947 Leucine rich repeat pr 96.4 0.00024 5.2E-09 80.5 -4.1 34 185-218 187-223 (482)
65 KOG2739 Leucine-rich acidic nu 96.2 0.0015 3.2E-08 64.2 0.8 79 142-220 44-127 (260)
66 KOG2739 Leucine-rich acidic nu 96.2 0.0032 6.9E-08 61.9 2.5 63 470-533 61-127 (260)
67 KOG2123 Uncharacterized conser 95.5 0.00066 1.4E-08 66.7 -4.9 95 120-215 19-123 (388)
68 KOG2123 Uncharacterized conser 95.4 0.00041 8.8E-09 68.1 -6.9 81 142-223 20-102 (388)
69 PF00560 LRR_1: Leucine Rich R 94.7 0.013 2.9E-07 34.3 0.8 20 500-519 1-20 (22)
70 PF00560 LRR_1: Leucine Rich R 94.5 0.026 5.7E-07 33.1 1.7 21 164-184 1-21 (22)
71 PF13306 LRR_5: Leucine rich r 93.9 0.35 7.6E-06 43.3 8.8 57 161-218 10-67 (129)
72 PF13504 LRR_7: Leucine rich r 93.5 0.049 1.1E-06 29.6 1.5 16 500-515 2-17 (17)
73 PF13306 LRR_5: Leucine rich r 93.4 0.31 6.7E-06 43.6 7.6 60 329-390 30-90 (129)
74 PF07725 LRR_3: Leucine Rich R 89.0 0.31 6.7E-06 27.6 1.6 19 164-182 1-19 (20)
75 PF13504 LRR_7: Leucine rich r 88.9 0.28 6.1E-06 26.6 1.4 11 165-175 3-13 (17)
76 smart00369 LRR_TYP Leucine-ric 88.8 0.39 8.5E-06 29.3 2.2 21 498-518 1-21 (26)
77 smart00370 LRR Leucine-rich re 88.8 0.39 8.5E-06 29.3 2.2 21 498-518 1-21 (26)
78 KOG4308 LRR-containing protein 86.0 0.0044 9.6E-08 68.6 -13.4 66 470-535 228-303 (478)
79 KOG4308 LRR-containing protein 83.7 0.0069 1.5E-07 67.2 -13.2 91 404-512 203-303 (478)
80 KOG0473 Leucine-rich repeat pr 82.1 0.043 9.4E-07 52.9 -6.6 78 142-219 43-121 (326)
81 KOG3864 Uncharacterized conser 82.0 0.4 8.6E-06 45.7 -0.2 36 406-441 102-138 (221)
82 KOG3864 Uncharacterized conser 81.6 0.2 4.3E-06 47.6 -2.4 70 155-224 92-166 (221)
83 KOG0473 Leucine-rich repeat pr 80.5 0.085 1.8E-06 51.0 -5.2 88 112-199 34-124 (326)
84 smart00369 LRR_TYP Leucine-ric 79.0 1.5 3.4E-05 26.6 1.8 22 404-425 1-22 (26)
85 smart00370 LRR Leucine-rich re 79.0 1.5 3.4E-05 26.6 1.8 22 404-425 1-22 (26)
86 smart00364 LRR_BAC Leucine-ric 77.3 1.5 3.2E-05 26.8 1.2 18 499-516 2-19 (26)
87 PF13516 LRR_6: Leucine Rich r 60.5 5.2 0.00011 23.7 1.2 14 499-512 2-15 (24)
88 smart00367 LRR_CC Leucine-rich 59.8 6.1 0.00013 24.0 1.4 15 522-536 2-16 (26)
89 smart00365 LRR_SD22 Leucine-ri 56.1 9.7 0.00021 23.3 1.8 15 499-513 2-16 (26)
90 COG4838 Uncharacterized protei 45.4 4.1 8.9E-05 31.8 -1.2 22 756-778 27-48 (92)
91 smart00368 LRR_RI Leucine rich 42.3 20 0.00043 22.3 1.7 14 499-512 2-15 (28)
92 KOG3763 mRNA export factor TAP 40.2 6.2 0.00013 43.6 -1.3 63 161-223 216-284 (585)
93 PRK13666 hypothetical protein; 24.6 13 0.00029 30.1 -1.5 22 756-778 27-48 (92)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4e-64 Score=613.33 Aligned_cols=625 Identities=28% Similarity=0.458 Sum_probs=417.0
Q ss_pred CeeeEeccCCCh-hhhchhcceecccCccCHHHHHHHhhhcCCCchhhhHhhhcccceeEeCCCceecchHHHHHHHHHH
Q 003945 2 NILQISFDGLQD-SEKKIFLDVACFFKRWDRDYVAKILEGCGFSPVIGIEVLIERSLLTVDDYNTLGMHNSLQELGQLIV 80 (784)
Q Consensus 2 ~iL~lSYd~L~~-~lK~cFl~~a~Fp~~~~~~~l~~~w~a~gf~~~~~~~~Li~r~li~~~~~~~v~mHdll~d~~~~i~ 80 (784)
++|++|||+|++ .+|.||+||||||+|.+++.+..++.+.|+.++.+++.|++||||++. .++++|||++|+||++|+
T Consensus 424 ~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~ 502 (1153)
T PLN03210 424 KTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIV 502 (1153)
T ss_pred HHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHH
Confidence 589999999986 599999999999999999998888888888889999999999999998 689999999999999999
Q ss_pred HhcCCCCCCCcccccchHHHHHHHhhcc-----------------cccCHHHHhcCCCcceEEEcCc----------ccc
Q 003945 81 TRQSPEEPGKRSRLWRQEEVRHVLRKNT-----------------VHLSAKAFSLMTNLGLLKINNV----------QLL 133 (784)
Q Consensus 81 ~~e~~~~~~~~~~l~~~~~i~~vl~~~~-----------------~~~~~~~f~~~~~Lr~L~l~~~----------~l~ 133 (784)
++++ .+|++++++|+++++++++..++ ..+...+|.+|++|++|.+..+ +++
T Consensus 503 ~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp 581 (1153)
T PLN03210 503 RAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP 581 (1153)
T ss_pred Hhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecC
Confidence 9998 78999999999999999998775 3467889999999999999654 356
Q ss_pred CchhhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccE
Q 003945 134 EGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEE 213 (784)
Q Consensus 134 ~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~ 213 (784)
+++..+|.+||.|+|++++++.+|..+.+.+|++|+|+++.++.+|.++..+++|+.|+|+++.....+|+++.+++|++
T Consensus 582 ~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~ 661 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLET 661 (1153)
T ss_pred cchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccE
Confidence 77888899999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred EEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeec
Q 003945 214 LYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTL 293 (784)
Q Consensus 214 L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L 293 (784)
|++++|..+..+|.++.. +++|+.|++
T Consensus 662 L~L~~c~~L~~lp~si~~-----------------------------------------------------L~~L~~L~L 688 (1153)
T PLN03210 662 LKLSDCSSLVELPSSIQY-----------------------------------------------------LNKLEDLDM 688 (1153)
T ss_pred EEecCCCCccccchhhhc-----------------------------------------------------cCCCCEEeC
Confidence 999999777766654433 333333555
Q ss_pred cCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCccc-
Q 003945 294 NDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFAR- 372 (784)
Q Consensus 294 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~- 372 (784)
++|..++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|++++|.+..+|..+ .+++|+.|.+.++.....
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhcc
Confidence 5555555555544 3566666666666655555543 345677777777777777654 466777777665432110
Q ss_pred ------ccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCC-ccccCCccccccccccEEecCCCCCCCCCC
Q 003945 373 ------VPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET-AVRRPPSSVFLMKNLRTLSFSGCNGPPSSA 445 (784)
Q Consensus 373 ------l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~ 445 (784)
.+......++|+.|++++|.....+|..++++++|+.|++++| .+..+|..+ .+++|+.|++++|..+...
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~- 841 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF- 841 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc-
Confidence 0111122356666666666666666666666666666666655 344555444 4556666666665533211
Q ss_pred CcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCC-CCCcccchhhhcCCCC
Q 003945 446 SWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSK-NNFVTLPASINSLLNL 524 (784)
Q Consensus 446 ~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~-n~l~~lp~~i~~l~~L 524 (784)
|. ..++|++|+|++|.+. .+|.++..+++|+.|+|++ +++..+|..+..+++|
T Consensus 842 ---------------------p~---~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L 895 (1153)
T PLN03210 842 ---------------------PD---ISTNISDLNLSRTGIE--EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895 (1153)
T ss_pred ---------------------cc---cccccCEeECCCCCCc--cChHHHhcCCCCCEEECCCCCCcCccCcccccccCC
Confidence 00 1134555555555553 3555555555555555555 2344555555555555
Q ss_pred CeeccccccccCcCC--CCCCCceEEEecCCccceeecCcc-hhccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhccC
Q 003945 525 KELEMEDCKRLQFLP--QLPPNIIFVKVNGCSSLVTLLGAL-KLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEAVSD 601 (784)
Q Consensus 525 ~~L~L~~c~~L~~i~--~lp~sL~~L~~~~C~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (784)
+.|++++|..|+.++ ..|.++..+. .++.+ .++... ....+|..+... . .++.
T Consensus 896 ~~L~l~~C~~L~~~~l~~~~~~~~~~~-~n~~~--~~p~~~~l~f~nC~~L~~~--------------a----~l~~--- 951 (1153)
T PLN03210 896 ETVDFSDCGALTEASWNGSPSEVAMAT-DNIHS--KLPSTVCINFINCFNLDQE--------------A----LLQQ--- 951 (1153)
T ss_pred CeeecCCCcccccccCCCCchhhhhhc-ccccc--cCCchhccccccccCCCch--------------h----hhcc---
Confidence 555555555554332 1111111000 00000 000000 000123222110 0 0111
Q ss_pred CCCceEEeecCCCCCCccccCCCCceEE-EEcCCCCcCCCcEEEEEEEEEEeeCCCcccccccCCCceeEEEEecCCCCe
Q 003945 602 PLKDFSTVIPGSKIPKWFMYQNEGSSIT-VTRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGF 680 (784)
Q Consensus 602 ~~~~~~~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~~g~~~c~v~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 680 (784)
......+++||.++|+||.||+.|++++ |.+|+.|. ...+.||++|+|+++...... ...+.+.+.|.+.+..+..
T Consensus 952 ~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~~~~--~~~~~~~~~c~~~~~~~~~ 1028 (1153)
T PLN03210 952 QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFFRFRACAVVDSESFFII--SVSFDIQVCCRFIDRLGNH 1028 (1153)
T ss_pred cccceEEECCCccCchhccCCcccceeeeeccCCccc-CCCccceEEEEEEecCccccC--CCceeEEEEEEEECCCCCc
Confidence 0122357899999999999999999998 99999887 678999999999986654211 1234567888887754443
Q ss_pred eEEecccccCCCCCeEEEEEecCcccc----------cc--ccccccCeEEEEEeccccccccCCCCCceEEEEeceeee
Q 003945 681 FITFGGKFSHSGSDHLWLLFLSPRECY----------DR--RWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGFHPV 748 (784)
Q Consensus 681 ~~~~~~~~~~~~s~h~~~~~~~~~~~~----------~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vk~cGv~li 748 (784)
.. ....+|+|+.|.....+. +. .+...++|+.+.|. .. .....++||+|||+++
T Consensus 1029 ~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~----~~---~~~~~~~~~~cg~~~~ 1094 (1153)
T PLN03210 1029 FD-------SPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFR----LT---NKNSQLKLKGCGIRLS 1094 (1153)
T ss_pred cc-------cCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEE----Ee---cCCCCeEEEeeeEEEe
Confidence 21 113444444443321110 00 11224677777775 11 1223479999999999
Q ss_pred ecccccc
Q 003945 749 YMHEVEE 755 (784)
Q Consensus 749 y~~~~~~ 755 (784)
|+++..+
T Consensus 1095 ~~~~~~~ 1101 (1153)
T PLN03210 1095 EDDSSLN 1101 (1153)
T ss_pred ccCCCcc
Confidence 9665443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-37 Score=382.07 Aligned_cols=444 Identities=20% Similarity=0.238 Sum_probs=285.3
Q ss_pred cCHHHHhcCCCcceEEEcCccccCchh-hcCcCccEEEEecCCCC-CCCCCC-CCCCeeEEEeCCCCcc-cccccccCCC
Q 003945 111 LSAKAFSLMTNLGLLKINNVQLLEGLE-YLSNKLRLLDWHRYPLK-SLPSNL-QLDKIVEFKMCYSRIE-ELWKGIKHLN 186 (784)
Q Consensus 111 ~~~~~f~~~~~Lr~L~l~~~~l~~~~~-~l~~~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~~~i~-~l~~~~~~l~ 186 (784)
++...|..+++||.|++++|.+.+.+. ....+|++|++++|.+. .+|..+ .+++|++|++++|.+. .+|..+.+++
T Consensus 109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 188 (968)
T PLN00113 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188 (968)
T ss_pred CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc
Confidence 344445566666666666665543221 12245666666666653 455555 6666666666666654 3566666666
Q ss_pred CccEEEcCCCCCCCCC-CCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcC
Q 003945 187 MLKVMKLSHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL 265 (784)
Q Consensus 187 ~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L 265 (784)
+|++|+|++|.....+ ..++++++|++|++++|.....+|..++. +++|++|++++|.+.+.+|..++++++|
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG------LTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc------CCCCCEEECcCceeccccChhHhCCCCC
Confidence 6666666666655443 34566666666666666444445544433 3556667777777777777777777777
Q ss_pred cEEEecCCCcc-ccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCc
Q 003945 266 QELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 344 (784)
Q Consensus 266 ~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 344 (784)
++|++++|.+. .+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|...+..|..+..+++|+.|++++|
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 77777777764 56677777777777777777666666666666777777777777666666666667777777777777
Q ss_pred CCc-ccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEc------------------------cCCCCCCcCCC
Q 003945 345 SIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNL------------------------SGCCKLENVPD 399 (784)
Q Consensus 345 ~i~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L------------------------s~c~~l~~~~~ 399 (784)
.+. .+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++ ++|...+.+|.
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 665 55666666666666666666655555555444444444444 44444444444
Q ss_pred CCCCCCCccEEecCCCcccc-CCccccccccccEEecCCCCCCCCCCCcccccccccccCc-cchhhccCCCCCCCCCCC
Q 003945 400 TLGQVESLEELDISETAVRR-PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS-SCLVALMLPSLSGLRSLT 477 (784)
Q Consensus 400 ~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~-~~~~~~~~~~l~~l~~L~ 477 (784)
.+..+++|+.|++++|.++. +|..+..+++|+.|++++|......+.......+..++.+ +.+.+..|..+..+++|+
T Consensus 423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 502 (968)
T PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELM 502 (968)
T ss_pred hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccC
Confidence 44455555555555555442 3333445556666666665533222221112223333333 344556677788899999
Q ss_pred EEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCc-ccchhhhcCCCCCeeccccccccCcCCCC---CCCceEEEecCC
Q 003945 478 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNGC 553 (784)
Q Consensus 478 ~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~i~~l---p~sL~~L~~~~C 553 (784)
.|++++|.+. +.+|..++++++|++|+|++|.++ .+|..+..+++|+.|+|++|+....+|.. .++|+.+++++|
T Consensus 503 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 503 QLKLSENKLS-GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred EEECcCCcce-eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 9999999886 678888999999999999999998 78888999999999999999887777752 357889999988
Q ss_pred ccceeecC
Q 003945 554 SSLVTLLG 561 (784)
Q Consensus 554 ~~L~~l~~ 561 (784)
.-...+|.
T Consensus 582 ~l~~~~p~ 589 (968)
T PLN00113 582 HLHGSLPS 589 (968)
T ss_pred cceeeCCC
Confidence 86665553
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.2e-37 Score=376.55 Aligned_cols=441 Identities=22% Similarity=0.262 Sum_probs=349.1
Q ss_pred CHHHHhcCCCcceEEEcCccccCch----hhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcc-cccccccCCC
Q 003945 112 SAKAFSLMTNLGLLKINNVQLLEGL----EYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIE-ELWKGIKHLN 186 (784)
Q Consensus 112 ~~~~f~~~~~Lr~L~l~~~~l~~~~----~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~ 186 (784)
.+.+|..+++|+.|++++|++.+.+ ....++||+|++++|.+........+++|++|+|++|.+. .+|..+++++
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCC
Confidence 3567999999999999999876432 2244699999999999854333346889999999999997 5889999999
Q ss_pred CccEEEcCCCCCCCCC-CCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcC
Q 003945 187 MLKVMKLSHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL 265 (784)
Q Consensus 187 ~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L 265 (784)
+|++|+|++|...... +.++++++|++|++++|.....+|..++. +++|++|++++|.+.+.+|..++++++|
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ------MKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC------cCCccEEECcCCccCCcCChhHhcCCCC
Confidence 9999999999877554 46899999999999998766666665554 5567779999999999999999999999
Q ss_pred cEEEecCCCcc-ccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCc
Q 003945 266 QELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 344 (784)
Q Consensus 266 ~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 344 (784)
++|++++|.+. .+|..+.++++|+.|++++|...+.+|..+..+++|++|++++|...+.+|..+..+++|+.|++++|
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 99999999986 78999999999999999998888889988999999999999999988899999999999999999999
Q ss_pred CCc-ccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc-cCCc
Q 003945 345 SIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPS 422 (784)
Q Consensus 345 ~i~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~-~lp~ 422 (784)
.+. .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|.+. .+|.
T Consensus 319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence 998 67788999999999999999999999999999999999999999888877877777777777777777665 4555
Q ss_pred cccccccccEEecCCCCCCCCCCC-cc------------------------cccccccccCcc-chhhccCCCCCCCCCC
Q 003945 423 SVFLMKNLRTLSFSGCNGPPSSAS-WH------------------------LHLPFNLMGKSS-CLVALMLPSLSGLRSL 476 (784)
Q Consensus 423 ~~~~l~~L~~L~l~~~~~l~~~~~-~~------------------------~~~~l~~~~~~~-~~~~~~~~~l~~l~~L 476 (784)
.+..+++|+.|++.+|......+. .. ....+..+...+ .+.+..|. ....++|
T Consensus 399 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~~~L 477 (968)
T PLN00113 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRL 477 (968)
T ss_pred HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc-ccccccc
Confidence 566666666666666552211110 00 011111222221 22222333 2345678
Q ss_pred CEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCc-ccchhhhcCCCCCeeccccccccCcCCCC---CCCceEEEecC
Q 003945 477 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNG 552 (784)
Q Consensus 477 ~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~i~~l---p~sL~~L~~~~ 552 (784)
+.|++++|++. +.+|..+..+++|+.|+|++|++. .+|..+..+++|+.|+|++|.....+|.. .++|+.|++++
T Consensus 478 ~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 556 (968)
T PLN00113 478 ENLDLSRNQFS-GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556 (968)
T ss_pred eEEECcCCccC-CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCC
Confidence 88888888775 677888888889999999999887 78888888999999999999877666642 25788888887
Q ss_pred Cccceeec
Q 003945 553 CSSLVTLL 560 (784)
Q Consensus 553 C~~L~~l~ 560 (784)
|.-...++
T Consensus 557 N~l~~~~p 564 (968)
T PLN00113 557 NQLSGEIP 564 (968)
T ss_pred CcccccCC
Confidence 76544433
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-31 Score=309.67 Aligned_cols=234 Identities=26% Similarity=0.391 Sum_probs=157.7
Q ss_pred CeeeEeccCCChhhhchhcceecccCc--cCHHHHHHHhhhcCCCch---------hh---hHhhhcccceeEeCC----
Q 003945 2 NILQISFDGLQDSEKKIFLDVACFFKR--WDRDYVAKILEGCGFSPV---------IG---IEVLIERSLLTVDDY---- 63 (784)
Q Consensus 2 ~iL~lSYd~L~~~lK~cFl~~a~Fp~~--~~~~~l~~~w~a~gf~~~---------~~---~~~Li~r~li~~~~~---- 63 (784)
+||++|||+||.++|+||||||+||+| ++++.++.+|+||||+.+ .| +.+|++++|++..++
T Consensus 399 ~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 399 PILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred HhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 689999999999999999999999999 788999999999999854 12 889999999997742
Q ss_pred CceecchHHHHHHHHHHHhcCCCCCCCcccccchHHHHHHHhhcccccCHHHHhcCCCcceEEEcCccccCchhhcCcCc
Q 003945 64 NTLGMHNSLQELGQLIVTRQSPEEPGKRSRLWRQEEVRHVLRKNTVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKL 143 (784)
Q Consensus 64 ~~v~mHdll~d~~~~i~~~e~~~~~~~~~~l~~~~~i~~vl~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~~l~~~L 143 (784)
..++|||++||||.+++.+........ ..
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~---iv------------------------------------------------ 507 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQ---IV------------------------------------------------ 507 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccce---EE------------------------------------------------
Confidence 568999999999999998544211110 00
Q ss_pred cEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCC-CCCCCC--CCCCCCccEEEecCCc
Q 003945 144 RLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSEN-LIKTPD--FTEAPNLEELYLEGCT 220 (784)
Q Consensus 144 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~-~~~~~~--l~~l~~L~~L~L~~~~ 220 (784)
-.+......|........+...+.++.+..++.... .++|++|-+..+.. ....+. |..
T Consensus 508 ----~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~------------- 569 (889)
T KOG4658|consen 508 ----SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRS------------- 569 (889)
T ss_pred ----ECCcCccccccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhh-------------
Confidence 000111122222223344444444444444433322 22444444444331 111111 223
Q ss_pred cCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCC
Q 003945 221 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 300 (784)
Q Consensus 221 ~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~ 300 (784)
++.|++||+++|...+.+|..++++-+|++|+++++.++.+|.++.++..|.+|++..+..+.
T Consensus 570 -----------------m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 570 -----------------LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred -----------------CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc
Confidence 344444444445555566667777778888888889999999999999999999999888777
Q ss_pred CCccccccccccCeEeecCCC
Q 003945 301 SLPVAISSFQCLRNLKLSGCS 321 (784)
Q Consensus 301 ~lp~~l~~l~~L~~L~L~~~~ 321 (784)
.+|.....+++|++|.+....
T Consensus 633 ~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 633 SIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccchhhhcccccEEEeeccc
Confidence 777766679999999887643
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=7.7e-32 Score=281.37 Aligned_cols=365 Identities=24% Similarity=0.343 Sum_probs=260.2
Q ss_pred ccEEEEecCCC--CCCCCCC-CCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCC
Q 003945 143 LRLLDWHRYPL--KSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 219 (784)
Q Consensus 143 Lr~L~l~~~~l--~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~ 219 (784)
.|-.++++|.. ..+|... .+..++.|.|..+.+..+|+.++.|.+|++|.+++|+..+.-..++.++.||.+.+..|
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 34445555544 3566666 66666666676666666777777777777777777666666666666677776666654
Q ss_pred cc-CcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChh-hhcccCCceeeccCcc
Q 003945 220 TK-LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCK 297 (784)
Q Consensus 220 ~~-l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 297 (784)
.. -..+|+.++.++. |.+||||+|.. ...|..+..-+++-.|++++|+|..+|.. +.+++.|-.|+|++ +
T Consensus 89 ~LKnsGiP~diF~l~d------Lt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-N 160 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKD------LTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-N 160 (1255)
T ss_pred ccccCCCCchhccccc------ceeeecchhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-c
Confidence 32 1245555555443 33477776643 44566666667777777777777777755 45666777777776 3
Q ss_pred CCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCc--ccCccccCCCCCCEEecCCCCCcccccc
Q 003945 298 NLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNFARVPS 375 (784)
Q Consensus 298 ~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~l~~ 375 (784)
.++.+|+.+..+..|+.|.|++|.....-...+..|++|+.|++++++-+ .+|.++..+.+|..++++.|. +...|.
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPe 239 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPE 239 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchH
Confidence 56777777777777777777776654433333445667777777777654 677777777777777777654 455677
Q ss_pred cccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCccccccccc
Q 003945 376 SINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNL 455 (784)
Q Consensus 376 ~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 455 (784)
.+.++++|+.|+|++|.+++ +....+.-.+|++|+++.|+++.+|+.+..++.|+.|.+.+|+..
T Consensus 240 cly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~-------------- 304 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT-------------- 304 (1255)
T ss_pred HHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc--------------
Confidence 77778888888888765433 333344456788888888888889998888999998888877621
Q ss_pred ccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeecccccccc
Q 003945 456 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRL 535 (784)
Q Consensus 456 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L 535 (784)
...+|..++.+..|+.+..++|.+ +..|+.++.|..|+.|.|+.|.+.++|+.|+-|+.|+.|++.+|++|
T Consensus 305 -------FeGiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 305 -------FEGIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred -------ccCCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 123477888999999999999988 67999999999999999999999999999999999999999999999
Q ss_pred CcCCC
Q 003945 536 QFLPQ 540 (784)
Q Consensus 536 ~~i~~ 540 (784)
...|.
T Consensus 376 VMPPK 380 (1255)
T KOG0444|consen 376 VMPPK 380 (1255)
T ss_pred cCCCC
Confidence 86664
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=8.7e-32 Score=268.31 Aligned_cols=269 Identities=23% Similarity=0.344 Sum_probs=205.2
Q ss_pred CCcccccchHHHH-HHHhhcccccCHHHHhcCCCcceEEEcCccccCchhhcC--cCccEEEEecCCCCCCCCCC-CCCC
Q 003945 89 GKRSRLWRQEEVR-HVLRKNTVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLS--NKLRLLDWHRYPLKSLPSNL-QLDK 164 (784)
Q Consensus 89 ~~~~~l~~~~~i~-~vl~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~~l~--~~Lr~L~l~~~~l~~lp~~~-~l~~ 164 (784)
++..++|...+.. ..+..|......+...++..|.+|.+.+|++.+.+.... ..++.|+.+.+.+..+|..+ .+..
T Consensus 36 ~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~ 115 (565)
T KOG0472|consen 36 GEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLIS 115 (565)
T ss_pred cchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhh
Confidence 3445666666554 355666666777778888888888888887665443332 36677778888888888777 7788
Q ss_pred eeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEE
Q 003945 165 IVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKIL 244 (784)
Q Consensus 165 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L 244 (784)
|+.|+.++|.+..+|++++.+..|..++..+|++...++++..+.+|..|++.++ .+.+.|+....+ +.|+.|
T Consensus 116 l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m------~~L~~l 188 (565)
T KOG0472|consen 116 LVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAM------KRLKHL 188 (565)
T ss_pred hhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHH------HHHHhc
Confidence 8888888888888888888888888888888888877888888888888888775 555555544433 445557
Q ss_pred EecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccc-cccccCeEeecCCCCC
Q 003945 245 ILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAIS-SFQCLRNLKLSGCSKL 323 (784)
Q Consensus 245 ~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~ 323 (784)
|...| ..+.+|..++.|.+|+-|++..|++..+| .|+.+..|+.|.++. +.++.+|.... .+++|.+||+.+| ++
T Consensus 189 d~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdN-kl 264 (565)
T KOG0472|consen 189 DCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDN-KL 264 (565)
T ss_pred ccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeecccc-cc
Confidence 76664 45678888888888888888888888888 788888888888876 46777877654 7888889999884 57
Q ss_pred ccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCC
Q 003945 324 KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 369 (784)
Q Consensus 324 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 369 (784)
++.|+.+.-+.+|+.|++++|.++.+|.+++++ .|+.|.+.+|.+
T Consensus 265 ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 265 KEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 788888888888999999999999999988888 888888888763
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-28 Score=256.32 Aligned_cols=361 Identities=23% Similarity=0.252 Sum_probs=225.4
Q ss_pred CcceEEEcCccccCc-----hhhcCcCccEEEEecCCCCCCCCC-C-CCCCeeEEEeCCCCcccccccccCCCCccEEEc
Q 003945 121 NLGLLKINNVQLLEG-----LEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKL 193 (784)
Q Consensus 121 ~Lr~L~l~~~~l~~~-----~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L 193 (784)
+-+.|++++..+... ...+|..-+.|++++|.+..+... | ++++|+.++|..|.++.+|.......+|+.|+|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEee
Confidence 356677777766532 334556777788888887766544 3 788888888888888888887777777888888
Q ss_pred CCCCCCCC-CCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecC
Q 003945 194 SHSENLIK-TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDG 272 (784)
Q Consensus 194 ~~~~~~~~-~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~ 272 (784)
.+|.+... -..++.++.||.|||+.| .+.+++..-+ ..-.++++|+|++|.++..-...|..+.+|..|.++.
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sf-----p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSF-----PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCC-----CCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 88766554 335777778888888775 4444442211 1124566777777777777777777777777777777
Q ss_pred CCccccChh-hhcccCCceeeccCccCCCCC-ccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccC
Q 003945 273 TDIKELPLS-IEHLFGLVQLTLNDCKNLSSL-PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 350 (784)
Q Consensus 273 ~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp 350 (784)
|.++.+|.. +.++++|+.|+|..|. ++.. -..|.++++|+.|.+..|....--...+-.+.++++|+|..|++.
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~--- 282 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ--- 282 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh---
Confidence 777777754 3447777777776642 2222 223455555555555555444333344444455555555555544
Q ss_pred ccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCc-ccccccc
Q 003945 351 SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SVFLMKN 429 (784)
Q Consensus 351 ~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~ 429 (784)
..-..++.++++|+.|+++.|.+...-++.....++|++|+|+.|.++.+++ ++..+..
T Consensus 283 --------------------~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 283 --------------------AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ 342 (873)
T ss_pred --------------------hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence 3334445555555555555554444444445555556666666666665543 3344566
Q ss_pred ccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCC---CcccCCCCCCCEEec
Q 003945 430 LRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI---PSDIGNLHSLNELYL 506 (784)
Q Consensus 430 L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~---p~~l~~l~~L~~L~L 506 (784)
|++|.|+.|+.. ...-..+..+++|++|||++|.+. ..+ ...+.++++|+.|++
T Consensus 343 Le~LnLs~Nsi~----------------------~l~e~af~~lssL~~LdLr~N~ls-~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 343 LEELNLSHNSID----------------------HLAEGAFVGLSSLHKLDLRSNELS-WCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred hhhhcccccchH----------------------HHHhhHHHHhhhhhhhcCcCCeEE-EEEecchhhhccchhhhheee
Confidence 666666665511 111223556677777777777653 222 223667888889999
Q ss_pred CCCCCcccch-hhhcCCCCCeeccccccc
Q 003945 507 SKNNFVTLPA-SINSLLNLKELEMEDCKR 534 (784)
Q Consensus 507 ~~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 534 (784)
.||++..+|. .+..|++|++|+|.+|..
T Consensus 400 ~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 400 TGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cCceeeecchhhhccCcccceecCCCCcc
Confidence 9998888886 577888899999988873
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=5.5e-29 Score=258.96 Aligned_cols=380 Identities=19% Similarity=0.200 Sum_probs=303.5
Q ss_pred CcceEEEcCccccC-c---hhhcCcCccEEEEecCCCCCCCCCC-CCCCeeEEEeCCCCccccc-ccccCCCCccEEEcC
Q 003945 121 NLGLLKINNVQLLE-G---LEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLS 194 (784)
Q Consensus 121 ~Lr~L~l~~~~l~~-~---~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~ 194 (784)
.-+.|++++|.+.. + +..+ ++|+.+++..|.+..+|... ...||+.|+|.+|.|..+. +.++-++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl-~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNL-PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcC-CcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 34669999999875 2 3344 49999999999999999988 6778999999999999874 568899999999999
Q ss_pred CCCCCCC-CCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCC
Q 003945 195 HSENLIK-TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGT 273 (784)
Q Consensus 195 ~~~~~~~-~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~ 273 (784)
.|.+... .+.+..-+++++|+|++| .++.+.. +.+ ..+.+|.+|.|+.|.++...+..|.++++|+.|++..|
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~--~~F---~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASN-RITTLET--GHF---DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccc-ccccccc--ccc---cccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 9987765 567888899999999997 4444432 222 22557888999999999988899999999999999999
Q ss_pred Ccccc-ChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCccc-Cc
Q 003945 274 DIKEL-PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PS 351 (784)
Q Consensus 274 ~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~ 351 (784)
.+..+ -..+..+++|+.|.+..|...+--...|..+.++++|+|+.|.....-..++-+++.|+.|+++.|.|..+ ++
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 99877 56789999999999999765555555677899999999999988877788899999999999999999965 45
Q ss_pred cccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc----cCCcccccc
Q 003945 352 SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR----RPPSSVFLM 427 (784)
Q Consensus 352 ~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~----~lp~~~~~l 427 (784)
+....++|+.|+|+.|.+...-+.++..+..|++|+|++|+....--..+..+++|++|+|++|.+. +-...+..+
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 6788999999999999988888888999999999999998765444445677899999999999876 223345568
Q ss_pred ccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecC
Q 003945 428 KNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS 507 (784)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~ 507 (784)
++|+.|.+.||+.-. .--..+.+++.|++|+|.+|.+. ...|+.+..+ .|++|.+.
T Consensus 392 ~~LrkL~l~gNqlk~----------------------I~krAfsgl~~LE~LdL~~Naia-SIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKS----------------------IPKRAFSGLEALEHLDLGDNAIA-SIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhhhheeecCceeee----------------------cchhhhccCcccceecCCCCcce-eecccccccc-hhhhhhhc
Confidence 899999999887211 11335778889999999999885 5677888887 88888776
Q ss_pred C------CCCcccchhhhcCCCCCeeccccc
Q 003945 508 K------NNFVTLPASINSLLNLKELEMEDC 532 (784)
Q Consensus 508 ~------n~l~~lp~~i~~l~~L~~L~L~~c 532 (784)
. |++.-++.++... .++.-..-.|
T Consensus 448 SssflCDCql~Wl~qWl~~~-~lq~sv~a~C 477 (873)
T KOG4194|consen 448 SSSFLCDCQLKWLAQWLYRR-KLQSSVIAKC 477 (873)
T ss_pred ccceEEeccHHHHHHHHHhc-ccccceeeec
Confidence 5 4555666666442 3334444444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=4.4e-30 Score=268.31 Aligned_cols=352 Identities=22% Similarity=0.258 Sum_probs=304.5
Q ss_pred cceEEEcCccccCc-----hhhcCcCccEEEEecCCCCCCCCCC-CCCCeeEEEeCCCCcccccccccCCCCccEEEcCC
Q 003945 122 LGLLKINNVQLLEG-----LEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSH 195 (784)
Q Consensus 122 Lr~L~l~~~~l~~~-----~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~ 195 (784)
.|-.++++|.++++ ...+ .++++|.+....+..+|... .+.+|+.|.+++|++..+...++.|+.||.+++++
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence 45566777777643 3333 48999999999999999998 99999999999999999999999999999999999
Q ss_pred CCCCCC--CCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCC
Q 003945 196 SENLIK--TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGT 273 (784)
Q Consensus 196 ~~~~~~--~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~ 273 (784)
|+.... ++++-.+..|..|+|+.| .+.++|..+... +++-.|+||+|++.+.....+.+++.|-.|+++.|
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~A------Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYA------KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred cccccCCCCchhcccccceeeecchh-hhhhcchhhhhh------cCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 987644 678999999999999996 788888655544 45566999999988777777889999999999999
Q ss_pred CccccChhhhcccCCceeeccCccCC----CCCccccccccccCeEeecCCCCC-ccCcccccCCCCCCEEeccCcCCcc
Q 003945 274 DIKELPLSIEHLFGLVQLTLNDCKNL----SSLPVAISSFQCLRNLKLSGCSKL-KKFPQIVTTMEDLSELNLDGTSITE 348 (784)
Q Consensus 274 ~i~~lp~~i~~l~~L~~L~L~~~~~~----~~lp~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~ 348 (784)
.+..+|+.+.++..|+.|.|++|... ..+|. +.+|++|.+++...+ ..+|..+..+.+|..++++.|.+..
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs----mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~ 236 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS----MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI 236 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc----chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc
Confidence 99999999999999999999997543 44554 788999999987654 5689999999999999999999999
Q ss_pred cCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc--cCCccccc
Q 003945 349 VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR--RPPSSVFL 426 (784)
Q Consensus 349 lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~--~lp~~~~~ 426 (784)
+|..+-.+++|+.|+|++|.+.+ +....+...+|++|+++.| .+..+|..+++++.|+.|.+.+|.++ .+|++++.
T Consensus 237 vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred chHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 99999999999999999998654 3344666789999999995 56789999999999999999999866 99999999
Q ss_pred cccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEec
Q 003945 427 MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYL 506 (784)
Q Consensus 427 l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L 506 (784)
+.+|+.+...+|. ....|.+++.|+.|+.|.|+.|.+. .+|+.+.-++.|+.||+
T Consensus 315 L~~Levf~aanN~-----------------------LElVPEglcRC~kL~kL~L~~NrLi--TLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 315 LIQLEVFHAANNK-----------------------LELVPEGLCRCVKLQKLKLDHNRLI--TLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred hhhhHHHHhhccc-----------------------cccCchhhhhhHHHHHhccccccee--echhhhhhcCCcceeec
Confidence 9999999998876 3345889999999999999999984 59999999999999999
Q ss_pred CCCCCc
Q 003945 507 SKNNFV 512 (784)
Q Consensus 507 ~~n~l~ 512 (784)
..|.-.
T Consensus 370 reNpnL 375 (1255)
T KOG0444|consen 370 RENPNL 375 (1255)
T ss_pred cCCcCc
Confidence 998544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=1.3e-30 Score=259.97 Aligned_cols=412 Identities=25% Similarity=0.314 Sum_probs=321.6
Q ss_pred cCHHHHhcCCCcceEEEcCcccc---CchhhcCcCccEEEEecCCCCCCCCCC-CCCCeeEEEeCCCCcccccccccCCC
Q 003945 111 LSAKAFSLMTNLGLLKINNVQLL---EGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLN 186 (784)
Q Consensus 111 ~~~~~f~~~~~Lr~L~l~~~~l~---~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~ 186 (784)
-..+....-..|..|++++|.+. +++..++ .|.+|.++++.+.++|+.+ .+..++.|+.++|++.++|+.+..+.
T Consensus 36 ~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~ 114 (565)
T KOG0472|consen 36 GEGENWWEQVDLQKLILSHNDLEVLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLI 114 (565)
T ss_pred cchhhhhhhcchhhhhhccCchhhccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhh
Confidence 34555666677888999988764 4555555 8999999999999999988 99999999999999999999999999
Q ss_pred CccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCc
Q 003945 187 MLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ 266 (784)
Q Consensus 187 ~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~ 266 (784)
+|+.++.+++.....+++++.+-.|+.|+..+| .+..+|.+++.+.++.. +++.+|......|..+. |+.|+
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~------l~~~~n~l~~l~~~~i~-m~~L~ 186 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSK------LDLEGNKLKALPENHIA-MKRLK 186 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHH------hhccccchhhCCHHHHH-HHHHH
Confidence 999999999999988999999999999999886 67788888888766655 99999887776666666 99999
Q ss_pred EEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcc-cccCCCCCCEEeccCcC
Q 003945 267 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQ-IVTTMEDLSELNLDGTS 345 (784)
Q Consensus 267 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~ 345 (784)
+|+...|.++.+|..++.+.+|..|++..| .+..+|+ |.++..|++|+++.|. .+.+|. ....++++..|++..|+
T Consensus 187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPe-f~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 187 HLDCNSNLLETLPPELGGLESLELLYLRRN-KIRFLPE-FPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred hcccchhhhhcCChhhcchhhhHHHHhhhc-ccccCCC-CCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc
Confidence 999999999999999999999999999995 6788885 8889999999998764 455554 45589999999999999
Q ss_pred CcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCC------------------------------
Q 003945 346 ITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE------------------------------ 395 (784)
Q Consensus 346 i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~------------------------------ 395 (784)
++++|..+..+.+|++|++++|.+ ..+|.+++++ +|+.|.+.||+..+
T Consensus 264 lke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred cccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 999999999999999999999875 4677789999 99999999886311
Q ss_pred -------cCC-C---CCCCCCCccEEecCCCccccCCcccccccc---ccEEecCCCCCCCCCCCcc-cccccccccCcc
Q 003945 396 -------NVP-D---TLGQVESLEELDISETAVRRPPSSVFLMKN---LRTLSFSGCNGPPSSASWH-LHLPFNLMGKSS 460 (784)
Q Consensus 396 -------~~~-~---~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~---L~~L~l~~~~~l~~~~~~~-~~~~l~~~~~~~ 460 (784)
..+ . ....+.+.+.|++++-+++.+|+.++..-. ....+++.|+...-..... ...-......++
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc
Confidence 000 0 112345778888888888888887766544 7777888776322111100 000011122344
Q ss_pred chhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchh-----------------------
Q 003945 461 CLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS----------------------- 517 (784)
Q Consensus 461 ~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~----------------------- 517 (784)
+..+..|..+..+++|..|++++|.+. .+|..++.+..|+.|+++.|.|..+|.+
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln--~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLN--DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhh--hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH
Confidence 455556667788888888888888874 5888888888888888888877666533
Q ss_pred -hhcCCCCCeeccccccccCcCC
Q 003945 518 -INSLLNLKELEMEDCKRLQFLP 539 (784)
Q Consensus 518 -i~~l~~L~~L~L~~c~~L~~i~ 539 (784)
+.++.+|.+|++.+|. ++.+|
T Consensus 500 ~l~nm~nL~tLDL~nNd-lq~IP 521 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNND-LQQIP 521 (565)
T ss_pred HhhhhhhcceeccCCCc-hhhCC
Confidence 5566777777777765 44443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=3e-23 Score=254.47 Aligned_cols=336 Identities=25% Similarity=0.386 Sum_probs=243.7
Q ss_pred CCCCeeEEEeCCCCc------c-cccccccCCC-CccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCcccccc
Q 003945 161 QLDKIVEFKMCYSRI------E-ELWKGIKHLN-MLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLH 232 (784)
Q Consensus 161 ~l~~L~~L~L~~~~i------~-~l~~~~~~l~-~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l 232 (784)
++++|++|.+..+.. . .+|.++..++ +|+.|++.++.....+..+ ...+|++|++.+| .+..++.++.
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~-- 631 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVH-- 631 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccccccccc--
Confidence 566666666654421 1 3566665553 5777777776554444444 4567777777664 3443333221
Q ss_pred CcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCcccccccccc
Q 003945 233 NKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCL 312 (784)
Q Consensus 233 ~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L 312 (784)
.+++|+.|+++++.. ++.+| .+..+++|+.|++.+|..+..+|..+..+++|
T Consensus 632 ----~l~~Lk~L~Ls~~~~-----------------------l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 632 ----SLTGLRNIDLRGSKN-----------------------LKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred ----cCCCCCEEECCCCCC-----------------------cCcCC-ccccCCcccEEEecCCCCccccchhhhccCCC
Confidence 123333344444322 23333 24556778888888888899999999999999
Q ss_pred CeEeecCCCCCccCcccccCCCCCCEEeccCcCC-cccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCC
Q 003945 313 RNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSI-TEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 391 (784)
Q Consensus 313 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i-~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c 391 (784)
+.|++++|..+..+|... ++++|+.|++++|.. ..+|.. .++|+.|++++|.+ ..+|..+ .+++|++|.+.++
T Consensus 684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI-EEFPSNL-RLENLDELILCEM 757 (1153)
T ss_pred CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc-ccccccc-ccccccccccccc
Confidence 999999999999988766 789999999999854 355542 46899999999874 5677655 5889999999875
Q ss_pred CCCC------cC-CCCCCCCCCccEEecCCCc-cccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchh
Q 003945 392 CKLE------NV-PDTLGQVESLEELDISETA-VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 463 (784)
Q Consensus 392 ~~l~------~~-~~~l~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 463 (784)
.... .+ +......++|+.|++++|. +..+|..+.++++|+.|++++|..+..
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-------------------- 817 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET-------------------- 817 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe--------------------
Confidence 4321 11 1122335789999999985 557999999999999999999985443
Q ss_pred hccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeeccccccccCcCCCCC-
Q 003945 464 ALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLP- 542 (784)
Q Consensus 464 ~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~i~~lp- 542 (784)
+|... .+++|+.|++++|... ..+|.. .++|+.|+|++|.++.+|.++..+++|+.|++++|++++.+|..+
T Consensus 818 --LP~~~-~L~sL~~L~Ls~c~~L-~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 818 --LPTGI-NLESLESLDLSGCSRL-RTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred --eCCCC-CccccCEEECCCCCcc-cccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 23333 6889999999999764 445543 468999999999999999999999999999999999999998644
Q ss_pred --CCceEEEecCCccceeecC
Q 003945 543 --PNIIFVKVNGCSSLVTLLG 561 (784)
Q Consensus 543 --~sL~~L~~~~C~~L~~l~~ 561 (784)
++|+.+++.+|++|+.++.
T Consensus 891 ~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 891 KLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cccCCCeeecCCCcccccccC
Confidence 4677889999999987764
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=6.6e-27 Score=256.42 Aligned_cols=398 Identities=23% Similarity=0.241 Sum_probs=289.6
Q ss_pred ccCHHHHhcCCCcceEEEcCccccCch---hhcCcCccEEEEecCCCCCCCCCC-CCCCeeEEEeCCCCcccccccccCC
Q 003945 110 HLSAKAFSLMTNLGLLKINNVQLLEGL---EYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHL 185 (784)
Q Consensus 110 ~~~~~~f~~~~~Lr~L~l~~~~l~~~~---~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l 185 (784)
..+.++.++.-+|+.|++++|++...+ ..+ .+|+.|.++.|.+..+|... ++.+|++|+|.+|.++.+|.++..+
T Consensus 35 ~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l-~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 35 SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLL-SHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISEL 113 (1081)
T ss_pred cCchHHhhheeeeEEeeccccccccCCchhhhH-HHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhh
Confidence 334556666666999999998876433 333 48999999999999999777 8999999999999999999999999
Q ss_pred CCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcC
Q 003945 186 NMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL 265 (784)
Q Consensus 186 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L 265 (784)
.+|++||++.|.....++.+..+..++.+..++|..+..++. . .++.+++..+...+.++..+..+++
T Consensus 114 knl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~-------~ik~~~l~~n~l~~~~~~~i~~l~~- 181 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----T-------SIKKLDLRLNVLGGSFLIDIYNLTH- 181 (1081)
T ss_pred hcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----c-------cchhhhhhhhhcccchhcchhhhhe-
Confidence 999999999998888888888888888888888743333221 1 1556888888888888888888888
Q ss_pred cEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcC
Q 003945 266 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 345 (784)
Q Consensus 266 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 345 (784)
.|++++|.+. -..+..+.+|+.|....+. +..+ ....++|+.|+...|......+. ....+|+.++++.+.
T Consensus 182 -~ldLr~N~~~--~~dls~~~~l~~l~c~rn~-ls~l---~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 182 -QLDLRYNEME--VLDLSNLANLEVLHCERNQ-LSEL---EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNN 252 (1081)
T ss_pred -eeecccchhh--hhhhhhccchhhhhhhhcc-cceE---EecCcchheeeeccCcceeeccc--cccccceeeecchhh
Confidence 8999999887 3345566677777665532 2221 12256888888888877643332 233578899999999
Q ss_pred CcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCcccc
Q 003945 346 ITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVF 425 (784)
Q Consensus 346 i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~ 425 (784)
+..+|.++..+.+|+.+++.+|.+ ..+|..+....+|+.|.+..| .+..+|...+.+++|++|++..|.+..+|+.+.
T Consensus 253 l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l 330 (1081)
T KOG0618|consen 253 LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFL 330 (1081)
T ss_pred hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHH
Confidence 999998899999999999988876 677777888888888888775 456677778888899999999999888887443
Q ss_pred cc--ccccEEecCCCCCCCCCCCcc-ccccccccc-CccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcc-cCCCCC
Q 003945 426 LM--KNLRTLSFSGCNGPPSSASWH-LHLPFNLMG-KSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD-IGNLHS 500 (784)
Q Consensus 426 ~l--~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~~-~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~-l~~l~~ 500 (784)
.- ..|..|..+.++......... ....+..+. ..+.++....+.+.++.+|+.|+|++|.+. .+|.. +.++..
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~ 408 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEE 408 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc--cCCHHHHhchHH
Confidence 32 124555555554222111111 011122222 334556666778889999999999999884 46654 788899
Q ss_pred CCEEecCCCCCcccchhhhcCCCCCeecccccc
Q 003945 501 LNELYLSKNNFVTLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 501 L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 533 (784)
|+.|+||||+++.+|.++..++.|++|...+|.
T Consensus 409 LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 409 LEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred hHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc
Confidence 999999999998888777766666666665553
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=4.5e-25 Score=242.11 Aligned_cols=371 Identities=23% Similarity=0.248 Sum_probs=233.0
Q ss_pred cccccCHHHHhcCCCcceEEEcCccccCchhhcC--cCccEEEEecCCCCCCCCCC-CCCCeeEEEeCCCCccccccccc
Q 003945 107 NTVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLS--NKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIK 183 (784)
Q Consensus 107 ~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~~l~--~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~ 183 (784)
|...-.+..+..+..|+.|.++.|.+........ ++|++|.+.++.+..+|..+ .+++|++|++++|.+..+|.-+.
T Consensus 55 n~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~ 134 (1081)
T KOG0618|consen 55 NQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIE 134 (1081)
T ss_pred cccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHH
Confidence 3334445566677789999998888765443333 68999999999999999999 89999999999999999888887
Q ss_pred CCCCccEEEcCCCCCCCCCCCC-----------------CCCCCccE-EEecCCccCcccCccccccCcccc--------
Q 003945 184 HLNMLKVMKLSHSENLIKTPDF-----------------TEAPNLEE-LYLEGCTKLRKVHPSLLLHNKLIF-------- 237 (784)
Q Consensus 184 ~l~~L~~L~L~~~~~~~~~~~l-----------------~~l~~L~~-L~L~~~~~l~~~~~~i~~l~~L~~-------- 237 (784)
.+..+..++.++|......+.. ...-+|++ |+|..|... . .....+.+|+.
T Consensus 135 ~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~l 211 (1081)
T KOG0618|consen 135 VLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-V--LDLSNLANLEVLHCERNQL 211 (1081)
T ss_pred hhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh-h--hhhhhccchhhhhhhhccc
Confidence 7777777777776211111110 11122333 555554222 1 11111112211
Q ss_pred ------cCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccc
Q 003945 238 ------VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQC 311 (784)
Q Consensus 238 ------l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 311 (784)
-++|+.|+.+.|......+. ..-.+|++++++.+.+..+|.+++.+.+|+.|+...| .+..+|..+....+
T Consensus 212 s~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 212 SELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLRISRITS 288 (1081)
T ss_pred ceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhh
Confidence 25666666666665533222 2235677777777777777777777777777777764 34666666666666
Q ss_pred cCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccc--------------------------cCCCCCCEEecC
Q 003945 312 LRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSI--------------------------ELLPGLELLNLN 365 (784)
Q Consensus 312 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l--------------------------~~l~~L~~L~L~ 365 (784)
|+.|.+..| .+..+|.....++.|++|++..|.+..+|..+ ...+.|+.|.+.
T Consensus 289 L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 289 LVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 666666654 34555556666666667777666666555421 123345555666
Q ss_pred CCCCcccccccccCCCCCCEEEccCCCCCCcCC-CCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCC
Q 003945 366 DCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSS 444 (784)
Q Consensus 366 ~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~ 444 (784)
+|.+....-+.+.++.+|+.|+|++|.. ..+| ..+.+++.|+.|++++|.++.+|..+..++.|++|...+|....
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~-- 444 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS-- 444 (1081)
T ss_pred cCcccccchhhhccccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee--
Confidence 6666555555566667777777776543 3333 34556666777777777777777766677777776666655221
Q ss_pred CCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCC
Q 003945 445 ASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 510 (784)
Q Consensus 445 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~ 510 (784)
.|.+..++.|+.+|+|.|++....+|..... ++|++||++||.
T Consensus 445 ----------------------fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 445 ----------------------FPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred ----------------------chhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 2256777778888888877766666655443 677888888775
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=2.5e-16 Score=179.70 Aligned_cols=254 Identities=22% Similarity=0.243 Sum_probs=151.1
Q ss_pred ccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccC
Q 003945 143 LRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKL 222 (784)
Q Consensus 143 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l 222 (784)
-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. +++|++|++++|.+... |.+ .++|++|++.+| .+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsL-P~l--p~sL~~L~Ls~N-~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSL-PVL--PPGLLELSIFSN-PL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcc-cCc--ccccceeeccCC-ch
Confidence 4445555555555555442 2455555555555555532 35556666655544432 221 245566666554 23
Q ss_pred cccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCC
Q 003945 223 RKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL 302 (784)
Q Consensus 223 ~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l 302 (784)
..+|.. ..+|+.|++++|.+. .+|.. +++|+.|++++|.+..+|... .+|+.|.+.+| .+..+
T Consensus 275 ~~Lp~l---------p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~L 337 (788)
T PRK15387 275 THLPAL---------PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSL 337 (788)
T ss_pred hhhhhc---------hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCCc---ccccccccccC-ccccc
Confidence 333321 133455666665443 23332 345667777777666665422 34556666664 34455
Q ss_pred ccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCC
Q 003945 303 PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKS 382 (784)
Q Consensus 303 p~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~ 382 (784)
|.. ..+|+.|++++|... .+|.. .++|+.|++++|.+..+|.. ..+|+.|++++|.+.+ +|.. .++
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred ccc---ccccceEecCCCccC-CCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 541 246777777775433 34432 24667777788877777753 3467888888876553 4432 357
Q ss_pred CCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCC
Q 003945 383 LKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 439 (784)
Q Consensus 383 L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 439 (784)
|+.|++++|... .+|.. ..+|+.|++++|.++.+|..+..+++|+.|++++|+
T Consensus 404 L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 404 LKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 888888887654 46653 346788888999988888888888899999998887
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=2.9e-16 Score=179.21 Aligned_cols=259 Identities=19% Similarity=0.189 Sum_probs=202.1
Q ss_pred CCcceEEEcCccccCchhhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCC
Q 003945 120 TNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENL 199 (784)
Q Consensus 120 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~ 199 (784)
.+-..|+++++.+..-+..++.+|+.|.+.+|.++.+|.. +++|++|++++|+++.+|.. .++|+.|++++|.+.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCchh
Confidence 3467789999888766666778999999999999999864 68999999999999999864 468999999998755
Q ss_pred CCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccC
Q 003945 200 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 279 (784)
Q Consensus 200 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp 279 (784)
.. |. ...+|+.|++++| .+..+|.. +++|+.|++++|.+.. +|.. ..+|+.|++++|.++.+|
T Consensus 276 ~L-p~--lp~~L~~L~Ls~N-~Lt~LP~~---------p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 276 HL-PA--LPSGLCKLWIFGN-QLTSLPVL---------PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred hh-hh--chhhcCEEECcCC-cccccccc---------ccccceeECCCCcccc-CCCC---cccccccccccCcccccc
Confidence 33 32 2357889999997 56666531 4678889999997664 4543 246788999999999888
Q ss_pred hhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCC
Q 003945 280 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGL 359 (784)
Q Consensus 280 ~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L 359 (784)
.. ..+|+.|++++| .+..+|.. ..+|+.|++++|... .+|.. ..+|+.|++++|.++.+|.. .++|
T Consensus 339 ~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L 404 (788)
T PRK15387 339 TL---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---PSEL 404 (788)
T ss_pred cc---ccccceEecCCC-ccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---ccCC
Confidence 52 257999999985 56677763 457888999887544 46654 35799999999999988864 3679
Q ss_pred CEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCcccc
Q 003945 360 ELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 419 (784)
Q Consensus 360 ~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~ 419 (784)
+.|++++|.+. .+|.. ..+|+.|++++|.. ..+|..++.+++|+.|++++|.++.
T Consensus 405 ~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 405 KELMVSGNRLT-SLPML---PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CEEEccCCcCC-CCCcc---hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCCCCc
Confidence 99999999865 46653 35788899999765 4789999999999999999999884
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=1.4e-16 Score=183.22 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=62.5
Q ss_pred cCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCc
Q 003945 141 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 220 (784)
Q Consensus 141 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 220 (784)
.+...|+++++.++++|..+ .++|+.|+|++|+++.+|..+. .+|++|++++|.+...+..+ ..+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N- 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSIN- 251 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCC-
Confidence 34556666666666666544 2456667777777666665543 46666666666544322222 134666666655
Q ss_pred cCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccC
Q 003945 221 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 279 (784)
Q Consensus 221 ~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp 279 (784)
.+..+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.++.+|
T Consensus 252 ~L~~LP~~l~--------s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 252 RITELPERLP--------SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLP 299 (754)
T ss_pred ccCcCChhHh--------CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCc
Confidence 2334443221 23444555544333 2333222 24555555555554444
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.67 E-value=6.5e-19 Score=176.71 Aligned_cols=264 Identities=23% Similarity=0.259 Sum_probs=152.3
Q ss_pred EEecCCCCCCCCCCCCCCeeEEEeCCCCccccccc-ccCCCCccEEEcCCCCCCCCCC-CCCCCCCccEEEecCCccCcc
Q 003945 147 DWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRK 224 (784)
Q Consensus 147 ~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~ 224 (784)
+.++-.+..+|..+ +..-+.+.|..|.|+.||++ |+.+++||.|||++|.+....| .|.+++.|-.|.+.++..++.
T Consensus 52 dCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 34444455555444 23445566666666666543 5666777777777766655533 466666666666666556666
Q ss_pred cCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccCh-hhhcccCCceeeccCccCCC---
Q 003945 225 VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLS--- 300 (784)
Q Consensus 225 ~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~--- 300 (784)
+|...+.- +.+|+.|.+..|.+.-.....+..|++|..|.+.+|.+..++. .+..+..++.+.+..+..+.
T Consensus 131 l~k~~F~g-----L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 131 LPKGAFGG-----LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred hhhhHhhh-----HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 66543321 3445556666666666666777777777777777777777776 56667777777665544211
Q ss_pred ---------CCccccccccc----------------------cCeE---eecCCCCCccCc-ccccCCCCCCEEeccCcC
Q 003945 301 ---------SLPVAISSFQC----------------------LRNL---KLSGCSKLKKFP-QIVTTMEDLSELNLDGTS 345 (784)
Q Consensus 301 ---------~lp~~l~~l~~----------------------L~~L---~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~ 345 (784)
..|..++.+.. ++.+ ..+.|......| ..+..+++|++|++++|.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 11211111111 1111 011111112222 235566777777777777
Q ss_pred CcccC-ccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCc
Q 003945 346 ITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 416 (784)
Q Consensus 346 i~~lp-~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~ 416 (784)
++.+. .++.....++.|.|..|++...-...+.++..|+.|+|.+|+++...|..+..+.+|.+|.+-.|.
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 76554 346666667777777666554444456666777777777776666666666666677777665554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=6.5e-16 Score=177.65 Aligned_cols=222 Identities=19% Similarity=0.262 Sum_probs=154.3
Q ss_pred CCcceEEEcCccccCchhhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCC
Q 003945 120 TNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENL 199 (784)
Q Consensus 120 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~ 199 (784)
.+...|.++++.+...+..+|..|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|.+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccC
Confidence 457889999988887666678899999999999999998763 589999999999999998764 58999999999877
Q ss_pred CCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccC
Q 003945 200 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 279 (784)
Q Consensus 200 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp 279 (784)
..+..+. .+|+.|++++| .+..+|..+. ++|+.|++++|.+.. +|..+. .+|+.|++++|.+..+|
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--------~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHN-KISCLPENLP--------EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALP 320 (754)
T ss_pred cCChhHh--CCCCEEECcCC-ccCccccccC--------CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCC
Confidence 5544443 58999999976 6667775432 468889999997654 554443 47888889988888887
Q ss_pred hhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCC
Q 003945 280 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGL 359 (784)
Q Consensus 280 ~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L 359 (784)
..+. ++|+.|++.+|. +..+|..+ .++|+.|++++|... .+|..+ .++|+.|++++|.++.+|..+. ..|
T Consensus 321 ~~l~--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL 390 (754)
T PRK15370 321 ETLP--PGLKTLEAGENA-LTSLPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--AAL 390 (754)
T ss_pred cccc--ccceeccccCCc-cccCChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHH
Confidence 6543 577777777753 44555543 246666666665432 334322 1355555555555555554332 234
Q ss_pred CEEecCCCC
Q 003945 360 ELLNLNDCK 368 (784)
Q Consensus 360 ~~L~L~~~~ 368 (784)
+.|++++|.
T Consensus 391 ~~LdLs~N~ 399 (754)
T PRK15370 391 QIMQASRNN 399 (754)
T ss_pred HHHhhccCC
Confidence 444444443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.57 E-value=1.8e-16 Score=169.32 Aligned_cols=260 Identities=23% Similarity=0.264 Sum_probs=139.5
Q ss_pred ccccCCCcCcEEEecCCCcc-----ccChhhhcccCCceeeccCccCC------CCCccccccccccCeEeecCCCCCcc
Q 003945 257 HVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNL------SSLPVAISSFQCLRNLKLSGCSKLKK 325 (784)
Q Consensus 257 ~~l~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~------~~lp~~l~~l~~L~~L~L~~~~~~~~ 325 (784)
..+..+.+|+.|+++++.++ .++..+...++|+.|+++++... ..++..+..+++|+.|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 33344444555555555442 23444444455555555543222 11223344455666666666655443
Q ss_pred CcccccCCC---CCCEEeccCcCCcc-----cCccccCC-CCCCEEecCCCCCccc----ccccccCCCCCCEEEccCCC
Q 003945 326 FPQIVTTME---DLSELNLDGTSITE-----VPSSIELL-PGLELLNLNDCKNFAR----VPSSINGLKSLKTLNLSGCC 392 (784)
Q Consensus 326 ~~~~~~~l~---~L~~L~L~~~~i~~-----lp~~l~~l-~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~Ls~c~ 392 (784)
.+..+..+. +|++|++++|.+.. +...+..+ ++|+.|++++|.+.+. ++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 333333333 36666666666551 22234445 6777777777766522 23344556677777777766
Q ss_pred CCCc----CCCCCCCCCCccEEecCCCccc-----cCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchh
Q 003945 393 KLEN----VPDTLGQVESLEELDISETAVR-----RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 463 (784)
Q Consensus 393 ~l~~----~~~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 463 (784)
..+. ++..+...++|+.|++++|.+. .+...+..+++|++|++++|..... .. ..+.
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~-~~-------------~~l~ 242 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA-GA-------------AALA 242 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH-HH-------------HHHH
Confidence 5532 2233444567777777777665 2233455567778888877752110 00 0000
Q ss_pred hccCCCCCCCCCCCEEecCCCCCCCC---CCCcccCCCCCCCEEecCCCCCcc-----cchhhhcC-CCCCeecccccc
Q 003945 464 ALMLPSLSGLRSLTKLDLSDCGLGEG---AIPSDIGNLHSLNELYLSKNNFVT-----LPASINSL-LNLKELEMEDCK 533 (784)
Q Consensus 464 ~~~~~~l~~l~~L~~L~Ls~~~l~~~---~~p~~l~~l~~L~~L~L~~n~l~~-----lp~~i~~l-~~L~~L~L~~c~ 533 (784)
... ....+.|++|++++|.+++. .+...+..+++|+++++++|.+.. +...+... +.|+.|++.+++
T Consensus 243 ~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 243 SAL---LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHH---hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 000 01346788888888877531 223445566788888888888873 23344445 678888877764
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=2e-15 Score=151.82 Aligned_cols=384 Identities=20% Similarity=0.200 Sum_probs=251.8
Q ss_pred EEcCccccCchhhcCcCccEEEEecCCCCCCCCCC--CCCCeeEEEeCCCCcccc-cccccCCCCccEEEcCCCCCCCCC
Q 003945 126 KINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENLIKT 202 (784)
Q Consensus 126 ~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~ 202 (784)
+.++-.+.+-+..+|..-..++++.|.++.+|... .+++|+.|+|++|.|+.| |..|+.+.+|..|-+.++...+.+
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 33444555667788889999999999999999765 899999999999999987 778999999999988884444444
Q ss_pred C--CCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCcc----
Q 003945 203 P--DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK---- 276 (784)
Q Consensus 203 ~--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~---- 276 (784)
| .|.++..|+.|.+.-| .+.-+.. ..++.+++|..|.+..|.+...--..+..+..++.+.+..|.+.
T Consensus 132 ~k~~F~gL~slqrLllNan-~i~Cir~-----~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNAN-HINCIRQ-----DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred hhhHhhhHHHHHHHhcChh-hhcchhH-----HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 4 4889999999988765 2222222 12333566666788777655544446777777777777666521
Q ss_pred ---------ccChhhhccc----------------------CCcee---eccCccCCCCCcc-ccccccccCeEeecCCC
Q 003945 277 ---------ELPLSIEHLF----------------------GLVQL---TLNDCKNLSSLPV-AISSFQCLRNLKLSGCS 321 (784)
Q Consensus 277 ---------~lp~~i~~l~----------------------~L~~L---~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~ 321 (784)
..|..++... .++.+ -.+.|......|. .|..+++|+.|++++|.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 1111111110 01111 1112222222332 37789999999999999
Q ss_pred CCccCcccccCCCCCCEEeccCcCCcccCcc-ccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCc----
Q 003945 322 KLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN---- 396 (784)
Q Consensus 322 ~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~---- 396 (784)
....-+.++.....+++|.|..|++..+... +..+..|+.|+|.+|++....|..|..+.+|.+|++-+|+..-.
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 8888889999999999999999999977654 78899999999999999999999999999999999987764321
Q ss_pred -CCCC-----------CCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCccccccc-ccccCccchh
Q 003945 397 -VPDT-----------LGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPF-NLMGKSSCLV 463 (784)
Q Consensus 397 -~~~~-----------l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l-~~~~~~~~~~ 463 (784)
+.+. -+....++.+.+++..+.+.... ....+-.+.-+-|+ .....+ .+...++...
T Consensus 366 wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~--~~ee~~~~~s~~cP--------~~c~c~~tVvRcSnk~l 435 (498)
T KOG4237|consen 366 WLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG--GPEELGCLTSSPCP--------PPCTCLDTVVRCSNKLL 435 (498)
T ss_pred HHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC--CccccCCCCCCCCC--------CCcchhhhhHhhcccch
Confidence 0000 12223455565555544322111 00000000011111 000000 1112233334
Q ss_pred hccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccch-hhhcCCCCCeeccccc
Q 003945 464 ALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDC 532 (784)
Q Consensus 464 ~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c 532 (784)
..+|+.+. ..-.+|++.+|.++ .+|.. .+.+| .+++++|.+..+.. .+.++++|.+|.|+.|
T Consensus 436 k~lp~~iP--~d~telyl~gn~~~--~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 436 KLLPRGIP--VDVTELYLDGNAIT--SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhcCCCCC--chhHHHhcccchhc--ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 44444332 24567889999985 58876 67888 89999999997765 4678888888888764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.7e-15 Score=135.10 Aligned_cols=60 Identities=33% Similarity=0.655 Sum_probs=37.9
Q ss_pred CCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeeccccccccCcCCCCCCCceEEEecC
Q 003945 489 GAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNG 552 (784)
Q Consensus 489 ~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~i~~lp~sL~~L~~~~ 552 (784)
+.+|..++.+++|+.|.+.+|++.++|..++.+++|+.|.+.+|+ ++ .+||.|-.+++.+
T Consensus 140 e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~---vlppel~~l~l~~ 199 (264)
T KOG0617|consen 140 EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LT---VLPPELANLDLVG 199 (264)
T ss_pred ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-ee---ecChhhhhhhhhh
Confidence 346666667777777777777777777777777777777777765 22 2445554444433
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=6.8e-15 Score=157.12 Aligned_cols=58 Identities=28% Similarity=0.268 Sum_probs=27.2
Q ss_pred CCCCEEEccCCCCCC----cCCCCCCCCCCccEEecCCCccccC-----Ccccccc-ccccEEecCCC
Q 003945 381 KSLKTLNLSGCCKLE----NVPDTLGQVESLEELDISETAVRRP-----PSSVFLM-KNLRTLSFSGC 438 (784)
Q Consensus 381 ~~L~~L~Ls~c~~l~----~~~~~l~~l~~L~~L~l~~~~i~~l-----p~~~~~l-~~L~~L~l~~~ 438 (784)
+.|++|++++|.... .+...+..+++|+.+++++|.+..- ...+... +.|++|++.++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 455555555554431 1223333445566666666655522 1122223 45666665554
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.3e-15 Score=135.82 Aligned_cols=156 Identities=24% Similarity=0.319 Sum_probs=79.6
Q ss_pred CCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcc
Q 003945 156 LPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKL 235 (784)
Q Consensus 156 lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L 235 (784)
+|..|++.+.+.|.|++|++..+|..+..+.+|++|++.+|++...++.++.+++|++|+++-| .+..+|..++.+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~--- 101 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSF--- 101 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCC---
Confidence 3333444555555555555555555555555555555555555555555555555555555432 333333333322
Q ss_pred cccCCccEEEecCCCCC-ccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCe
Q 003945 236 IFVESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRN 314 (784)
Q Consensus 236 ~~l~~L~~L~ls~~~~~-~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 314 (784)
+.|+.||+++|... ..+|..|..|+.|+.|++++|.++-+|..++++++|+.|.+++| .+-++|..++.+..|++
T Consensus 102 ---p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 102 ---PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRE 177 (264)
T ss_pred ---chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHH
Confidence 22333444444332 23555555666666666666666666666666666666666653 33444544444444444
Q ss_pred EeecC
Q 003945 315 LKLSG 319 (784)
Q Consensus 315 L~L~~ 319 (784)
|.+.+
T Consensus 178 lhiqg 182 (264)
T KOG0617|consen 178 LHIQG 182 (264)
T ss_pred Hhccc
Confidence 44444
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=1.6e-11 Score=143.86 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=40.0
Q ss_pred CccEEEEecCC--CCCCCCCC--CCCCeeEEEeCCC-CcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEe
Q 003945 142 KLRLLDWHRYP--LKSLPSNL--QLDKIVEFKMCYS-RIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYL 216 (784)
Q Consensus 142 ~Lr~L~l~~~~--l~~lp~~~--~l~~L~~L~L~~~-~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L 216 (784)
+|+.|-+.++. +..++..| .++.|++|||++| .+.++|+.++.|-+||+|+++++.+...|+.+.++.+|.+|++
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence 45555555554 44444432 4555555555533 3344555555555555555555554444444555555555555
Q ss_pred cCC
Q 003945 217 EGC 219 (784)
Q Consensus 217 ~~~ 219 (784)
..+
T Consensus 626 ~~~ 628 (889)
T KOG4658|consen 626 EVT 628 (889)
T ss_pred ccc
Confidence 443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=2e-11 Score=128.88 Aligned_cols=186 Identities=25% Similarity=0.347 Sum_probs=108.1
Q ss_pred EEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCcc
Q 003945 338 ELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAV 417 (784)
Q Consensus 338 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i 417 (784)
..+++.|.+.++|..+..+..|+.+.+..|. ...+|..+.++..|..|+++.|. +..+|..++.++ |+.|-+++|++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCcc
Confidence 3445555555555555555555555555433 23344555555556666665532 334454444443 66666666666
Q ss_pred ccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCC
Q 003945 418 RRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGN 497 (784)
Q Consensus 418 ~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~ 497 (784)
+.+|..++.++.|..|+.+.|. ...+|+.++.+.+|+.|.++.|++. .+|..+.
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~ne-----------------------i~slpsql~~l~slr~l~vrRn~l~--~lp~El~- 209 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNE-----------------------IQSLPSQLGYLTSLRDLNVRRNHLE--DLPEELC- 209 (722)
T ss_pred ccCCcccccchhHHHhhhhhhh-----------------------hhhchHHhhhHHHHHHHHHhhhhhh--hCCHHHh-
Confidence 6666666666666666666655 1222555666666777777666663 3666666
Q ss_pred CCCCCEEecCCCCCcccchhhhcCCCCCeeccccccccCcCCC-CC-----CCceEEEecCC
Q 003945 498 LHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQ-LP-----PNIIFVKVNGC 553 (784)
Q Consensus 498 l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~i~~-lp-----~sL~~L~~~~C 553 (784)
.-.|..||++.|++..||.++.++..|++|.|.+|+ |++-|. +. .-.++|++.-|
T Consensus 210 ~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 335677777777777777777777777777777776 554442 11 12355555555
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.1e-10 Score=117.82 Aligned_cols=182 Identities=26% Similarity=0.256 Sum_probs=97.0
Q ss_pred cCCCCCCEEeccCcCCc---ccCccccCCCCCCEEecCCCCCccccccc-ccCCCCCCEEEccCCCCCC-cCCCCCCCCC
Q 003945 331 TTMEDLSELNLDGTSIT---EVPSSIELLPGLELLNLNDCKNFARVPSS-INGLKSLKTLNLSGCCKLE-NVPDTLGQVE 405 (784)
Q Consensus 331 ~~l~~L~~L~L~~~~i~---~lp~~l~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~Ls~c~~l~-~~~~~l~~l~ 405 (784)
..+++++.|++++|-+. .+......+|+|+.|+++.|++..-..+. -..+++|+.|.+++|.... .+-..+..+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 34445555555554433 12223344555555555555443221111 1234555666665555432 1122223445
Q ss_pred CccEEecCCCc-cccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCC
Q 003945 406 SLEELDISETA-VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDC 484 (784)
Q Consensus 406 ~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~ 484 (784)
+|+.|++..|. +..-.....-+..|+.|+|++|....... ....+.++.|..|+++.|
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~---------------------~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ---------------------GYKVGTLPGLNQLNLSST 281 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc---------------------ccccccccchhhhhcccc
Confidence 56666665552 22222223335566666666665332211 233556777777777777
Q ss_pred CCCCCCCCcc-----cCCCCCCCEEecCCCCCcccch--hhhcCCCCCeecccccc
Q 003945 485 GLGEGAIPSD-----IGNLHSLNELYLSKNNFVTLPA--SINSLLNLKELEMEDCK 533 (784)
Q Consensus 485 ~l~~~~~p~~-----l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c~ 533 (784)
.+.+-..|+. ...+++|++|+++.|++...+. .+..+++|+.|.+..++
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 7765555554 4567888888888888876553 56677777777766655
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=2.1e-09 Score=118.28 Aligned_cols=197 Identities=32% Similarity=0.478 Sum_probs=146.5
Q ss_pred eEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCC-CCCEEecCCCCCcccccccccCCCCCCEEEccCCC
Q 003945 314 NLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLP-GLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 392 (784)
Q Consensus 314 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~-~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~ 392 (784)
.+.+.++..... ...+..++.++.|.+.++.+++++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 355554433222 2223344678888888888888888777774 8888888887643 444557788888888888865
Q ss_pred CCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCC
Q 003945 393 KLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSG 472 (784)
Q Consensus 393 ~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 472 (784)
. ..+|...+..++|+.|++++|.+..+|..+..+..|++|.+++|.... .+..+..
T Consensus 175 l-~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-----------------------~~~~~~~ 230 (394)
T COG4886 175 L-SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-----------------------LLSSLSN 230 (394)
T ss_pred h-hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-----------------------cchhhhh
Confidence 4 445555557888999999999999999888778889999999885222 1455677
Q ss_pred CCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeeccccccccCcCC
Q 003945 473 LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 539 (784)
Q Consensus 473 l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~i~ 539 (784)
+.++..+.+.+|++. .++..++.+++|++|++++|.++.++. +..+.+|+.|+++++.....+|
T Consensus 231 ~~~l~~l~l~~n~~~--~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 231 LKNLSGLELSNNKLE--DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccccCCceee--eccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 788888888888874 357788889999999999999998887 8889999999999887554433
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.7e-10 Score=116.97 Aligned_cols=213 Identities=20% Similarity=0.196 Sum_probs=127.8
Q ss_pred hcccCCceeeccCccCCCCCc--cccccccccCeEeecCCCCCc--cCcccccCCCCCCEEeccCcCCcccCcc--ccCC
Q 003945 283 EHLFGLVQLTLNDCKNLSSLP--VAISSFQCLRNLKLSGCSKLK--KFPQIVTTMEDLSELNLDGTSITEVPSS--IELL 356 (784)
Q Consensus 283 ~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~i~~lp~~--l~~l 356 (784)
.++.+|+...|+++ .....+ .-...+++++.|+|+.|-... .+......+|+|+.|+++.|.+....++ -..+
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 34455555555543 222222 124446666666666653322 2334455667777777777766533222 2356
Q ss_pred CCCCEEecCCCCCccc-ccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCC--ccccccccccEE
Q 003945 357 PGLELLNLNDCKNFAR-VPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP--SSVFLMKNLRTL 433 (784)
Q Consensus 357 ~~L~~L~L~~~~~~~~-l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L 433 (784)
+.|+.|.++.|.+... +......+|+|+.|.+.+|...........-+..|+.|+|++|.+...+ ...+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7778888888876532 2223456788888888887543332333344567888888888887766 567778888888
Q ss_pred ecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCc
Q 003945 434 SFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 512 (784)
Q Consensus 434 ~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 512 (784)
+++.|....... .......-...+++|++|+++.|++.+=..-..+..+++|+.|.+.+|.+.
T Consensus 277 nls~tgi~si~~----------------~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAE----------------PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcC----------------CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 888876221100 000001113568899999999999864233345667788888888888776
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=3.2e-09 Score=116.77 Aligned_cols=197 Identities=25% Similarity=0.357 Sum_probs=112.0
Q ss_pred EEEEecCCCC-CCCCCCCCCCeeEEEeCCCCcccccccccCCC-CccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccC
Q 003945 145 LLDWHRYPLK-SLPSNLQLDKIVEFKMCYSRIEELWKGIKHLN-MLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKL 222 (784)
Q Consensus 145 ~L~l~~~~l~-~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~-~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l 222 (784)
.+....+.+. .......+..++.|++.++.+..++.....+. +|+.|+++++.+...+..+..+++|+.|++++| .+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hh
Confidence 3445555442 22222245566666666666666666666553 666666666655544445566666666666664 23
Q ss_pred cccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCC
Q 003945 223 RKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL 302 (784)
Q Consensus 223 ~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l 302 (784)
..++.. .+..+.|+.|++++|.+..+|..+.....|+.|.+.++. ....
T Consensus 176 ~~l~~~------------------------------~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~ 224 (394)
T COG4886 176 SDLPKL------------------------------LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIEL 224 (394)
T ss_pred hhhhhh------------------------------hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceec
Confidence 333322 223445555566666666666555555556666666543 2333
Q ss_pred ccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccc
Q 003945 303 PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPS 375 (784)
Q Consensus 303 p~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~ 375 (784)
+..+..+.++..+.+.++ ....++..++.+++++.|++++|.+..++. ++.+.+|+.|+++++......+.
T Consensus 225 ~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 225 LSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred chhhhhcccccccccCCc-eeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 333555566666654443 233335666666777777777777777766 67777777777777766555444
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=5.4e-10 Score=109.03 Aligned_cols=133 Identities=29% Similarity=0.355 Sum_probs=75.7
Q ss_pred CCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecC
Q 003945 334 EDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 413 (784)
Q Consensus 334 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~ 413 (784)
..|+++++++|.|+.+..++.-.|.++.|++++|.+...- .+..+++|+.|+++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--------------------------nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--------------------------NLAELPQLQLLDLS 337 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--------------------------hhhhcccceEeecc
Confidence 4566777777777777776666677777777666543221 13344556666666
Q ss_pred CCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCc
Q 003945 414 ETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS 493 (784)
Q Consensus 414 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~ 493 (784)
+|.++.+..+-..+.|.+.|.+.+|.... ...++.+-+|..||+++|++.+-.-..
T Consensus 338 ~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~------------------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~ 393 (490)
T KOG1259|consen 338 GNLLAECVGWHLKLGNIKTLKLAQNKIET------------------------LSGLRKLYSLVNLDLSSNQIEELDEVN 393 (490)
T ss_pred cchhHhhhhhHhhhcCEeeeehhhhhHhh------------------------hhhhHhhhhheeccccccchhhHHHhc
Confidence 66666555555556666666666654110 223445556666666666653222233
Q ss_pred ccCCCCCCCEEecCCCCCcccch
Q 003945 494 DIGNLHSLNELYLSKNNFVTLPA 516 (784)
Q Consensus 494 ~l~~l~~L~~L~L~~n~l~~lp~ 516 (784)
.++++|.|+.+.|.+|.+..+|+
T Consensus 394 ~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ccccccHHHHHhhcCCCccccch
Confidence 45566666666666665555443
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.84 E-value=3.8e-10 Score=112.98 Aligned_cols=65 Identities=26% Similarity=0.385 Sum_probs=49.1
Q ss_pred CCCCCCCCCEEecCCCCCCCCCCCc---cc-CCCCCCCEEecCCCCCc-----ccchhhhcCCCCCeecccccc
Q 003945 469 SLSGLRSLTKLDLSDCGLGEGAIPS---DI-GNLHSLNELYLSKNNFV-----TLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 469 ~l~~l~~L~~L~Ls~~~l~~~~~p~---~l-~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 533 (784)
.+..+++|++|++++|.+....-.. .+ ...|+|+.|.+.+|.++ .+-.++...+.|+.|+|++|+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 4566778899999999875432221 11 34789999999999888 455677889999999999997
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=1.3e-09 Score=106.39 Aligned_cols=201 Identities=22% Similarity=0.250 Sum_probs=128.7
Q ss_pred ccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCC-CCCcccccccccCCC
Q 003945 303 PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND-CKNFARVPSSINGLK 381 (784)
Q Consensus 303 p~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~-~~~~~~l~~~~~~l~ 381 (784)
|..+.-+.+|+.+.++.|.- +.+.+....-|.|.++.+.++.+...|.-+. ...+....-.. ....+.....+...+
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p-e~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNTTIQDVPSLLP-ETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred ccchHHhhhhheeeeeccch-hheeceeecCchhheeeeecccccccccccc-hhhhcCccCCCCCccCCceEEecchHh
Confidence 33344456666666666532 2222222333566777766665554433211 01111110000 011122223344568
Q ss_pred CCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccc
Q 003945 382 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSC 461 (784)
Q Consensus 382 ~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~ 461 (784)
.|+++++++|.+ ..+-++..-+|.++.|+++.|.++.+.. +..+++|+.|++++|.....
T Consensus 285 ~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~------------------ 344 (490)
T KOG1259|consen 285 ELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC------------------ 344 (490)
T ss_pred hhhhccccccch-hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh------------------
Confidence 899999999654 4455667778899999999999998765 88899999999999872111
Q ss_pred hhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccch--hhhcCCCCCeecccccc
Q 003945 462 LVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA--SINSLLNLKELEMEDCK 533 (784)
Q Consensus 462 ~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c~ 533 (784)
.-+-..+-+.+.|.|++|.+. --..++.+-+|..||+++|++..+.+ .|+++|.|+.+.|.+|+
T Consensus 345 -----~Gwh~KLGNIKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 345 -----VGWHLKLGNIKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred -----hhhHhhhcCEeeeehhhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 111224668899999999874 23457778899999999999996654 78999999999999998
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=2.3e-08 Score=94.31 Aligned_cols=77 Identities=29% Similarity=0.401 Sum_probs=16.6
Q ss_pred CccEEEEecCCCCCCCCCC-CCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCC-CCCCCccEEEecCC
Q 003945 142 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDF-TEAPNLEELYLEGC 219 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l-~~l~~L~~L~L~~~ 219 (784)
++|.|+++++.+..+..-- .+.+|+.|+|++|.|+.+. ++..+++|++|++++|.+....+.+ ..+++|++|++++|
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 4555555555555544322 3455555555555555542 4455555555555555544332222 13455555555543
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.67 E-value=2.4e-09 Score=107.29 Aligned_cols=243 Identities=24% Similarity=0.272 Sum_probs=137.1
Q ss_pred HHHhcCCCcceEEEcCccccC--------chhhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCC
Q 003945 114 KAFSLMTNLGLLKINNVQLLE--------GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHL 185 (784)
Q Consensus 114 ~~f~~~~~Lr~L~l~~~~l~~--------~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l 185 (784)
.....+..+..+++++|.+-. .+...+ +||..+|+..-.+.+-..+ ...+..+.+.+..+
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei-----------~e~L~~l~~aL~~~ 91 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKK-ELREVNLSDMFTGRLKDEI-----------PEALKMLSKALLGC 91 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcc-cceeeehHhhhcCCcHHHH-----------HHHHHHHHHHHhcC
Confidence 445677888888888888742 222333 6777777654322111100 00011122334556
Q ss_pred CCccEEEcCCCCCCCC-CCC----CCCCCCccEEEecCCccCcccC-cc-------ccccCcccccCCccEEEecCCCCC
Q 003945 186 NMLKVMKLSHSENLIK-TPD----FTEAPNLEELYLEGCTKLRKVH-PS-------LLLHNKLIFVESLKILILSGCLKL 252 (784)
Q Consensus 186 ~~L~~L~L~~~~~~~~-~~~----l~~l~~L~~L~L~~~~~l~~~~-~~-------i~~l~~L~~l~~L~~L~ls~~~~~ 252 (784)
++|++||||+|-+... ++. ++.+..|++|+|.+|. +.... .. +...++...-+.|+++..+.|...
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 6777777777655433 222 4556777777777763 21110 00 112233344567888888877654
Q ss_pred c----cccccccCCCcCcEEEecCCCcc-----ccChhhhcccCCceeeccCccCCCC----CccccccccccCeEeecC
Q 003945 253 R----KFPHVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNLSS----LPVAISSFQCLRNLKLSG 319 (784)
Q Consensus 253 ~----~~~~~l~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~ 319 (784)
. .+...+...+.|+.+.+..|.|. .+...+..+++|+.|+|++|..... +...+..+++|++|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 3 34556777788999999888775 3455677888888888888755432 233455577888888888
Q ss_pred CCCCccCccc----c-cCCCCCCEEeccCcCCcc-----cCccccCCCCCCEEecCCCCC
Q 003945 320 CSKLKKFPQI----V-TTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKN 369 (784)
Q Consensus 320 ~~~~~~~~~~----~-~~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~~~~ 369 (784)
|.....-... + ...|+|+.|.+.+|.++. +...+...+.|+.|+|++|.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7654432221 1 234666666666666651 112233355555555555554
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.66 E-value=1.1e-09 Score=116.07 Aligned_cols=195 Identities=23% Similarity=0.284 Sum_probs=124.0
Q ss_pred CCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCC
Q 003945 161 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVES 240 (784)
Q Consensus 161 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~ 240 (784)
.+..-+..+++.|++..+|..+..+..|+.+.|++|.+...++.+.++..|.+|+|+.| .+..+|..+..+ -
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-------p 144 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-------P 144 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-------c
Confidence 44455566666677666776666666677777766666666666666666666666664 444444444333 2
Q ss_pred ccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCC
Q 003945 241 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGC 320 (784)
Q Consensus 241 L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 320 (784)
|+.|-+++|+ .+.+|..++....|..|+.+.|.+..+|+.++.+.+|+.|.++.| .+..+|..+. .-.|..||++.
T Consensus 145 Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~-~LpLi~lDfSc- 220 (722)
T KOG0532|consen 145 LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELC-SLPLIRLDFSC- 220 (722)
T ss_pred ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHh-CCceeeeeccc-
Confidence 4445555543 345666666677788888888888888888888888888888774 5556666565 33466677664
Q ss_pred CCCccCcccccCCCCCCEEeccCcCCcccCccc---cCCCCCCEEecCCC
Q 003945 321 SKLKKFPQIVTTMEDLSELNLDGTSITEVPSSI---ELLPGLELLNLNDC 367 (784)
Q Consensus 321 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l---~~l~~L~~L~L~~~ 367 (784)
+++..+|..+.+|..|++|-|.+|.+..-|..+ +...-.++|+..-|
T Consensus 221 Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 221 NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 455666777777777777777777776655443 22333445555555
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=1.1e-08 Score=96.55 Aligned_cols=104 Identities=24% Similarity=0.286 Sum_probs=42.5
Q ss_pred cCCCcceEEEcCcccc--CchhhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccc-cCCCCccEEEcC
Q 003945 118 LMTNLGLLKINNVQLL--EGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGI-KHLNMLKVMKLS 194 (784)
Q Consensus 118 ~~~~Lr~L~l~~~~l~--~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~L~ 194 (784)
+..++|.|++.++.++ +.+.....+|+.|++++|.+++++..-.+++|++|++++|.|+.+.+++ ..+++|+.|+++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 3446899999999987 4454333589999999999999986559999999999999999997666 469999999999
Q ss_pred CCCCCCC--CCCCCCCCCccEEEecCCcc
Q 003945 195 HSENLIK--TPDFTEAPNLEELYLEGCTK 221 (784)
Q Consensus 195 ~~~~~~~--~~~l~~l~~L~~L~L~~~~~ 221 (784)
+|++... +..++.+++|++|++.+|+-
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 9987543 44577888999999988753
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=3.2e-07 Score=105.90 Aligned_cols=113 Identities=28% Similarity=0.477 Sum_probs=89.2
Q ss_pred CccEEecCCCccc-cCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCC
Q 003945 406 SLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDC 484 (784)
Q Consensus 406 ~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~ 484 (784)
.++.|+|++|.+. .+|..+..+++|+.|+|++|. +.+.+|..++.+++|+.|+|++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~----------------------l~g~iP~~~~~l~~L~~LdLs~N 476 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS----------------------IRGNIPPSLGSITSLEVLDLSYN 476 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc----------------------ccCcCChHHhCCCCCCEEECCCC
Confidence 3677888888877 577778888888888888876 23344667888889999999999
Q ss_pred CCCCCCCCcccCCCCCCCEEecCCCCCc-ccchhhhcC-CCCCeeccccccccCcCCCC
Q 003945 485 GLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSL-LNLKELEMEDCKRLQFLPQL 541 (784)
Q Consensus 485 ~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l-~~L~~L~L~~c~~L~~i~~l 541 (784)
++. +.+|..++.+++|+.|+|++|+++ .+|..+..+ .++..+++.+|+.+...|.+
T Consensus 477 ~ls-g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l 534 (623)
T PLN03150 477 SFN-GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL 534 (623)
T ss_pred CCC-CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCC
Confidence 886 778888999999999999999888 888887653 46778888888877665543
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.41 E-value=1.3e-06 Score=92.33 Aligned_cols=73 Identities=25% Similarity=0.524 Sum_probs=44.0
Q ss_pred CCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEec
Q 003945 333 MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDI 412 (784)
Q Consensus 333 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l 412 (784)
+.+++.|++++|.++.+|. ..++|+.|.+++|..+..+|..+ .++|+.|.+++|..+..+|. +|+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEe
Confidence 4556666666666666662 23457777777777666666544 25677777777765555553 3555555
Q ss_pred CCCc
Q 003945 413 SETA 416 (784)
Q Consensus 413 ~~~~ 416 (784)
..+.
T Consensus 120 ~~n~ 123 (426)
T PRK15386 120 KGSA 123 (426)
T ss_pred CCCC
Confidence 5443
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.27 E-value=1.2e-08 Score=104.50 Aligned_cols=275 Identities=19% Similarity=0.258 Sum_probs=163.3
Q ss_pred CeeEEEeCCCCcc---cccccccCCCCccEEEcCCCCCCCCCC--CC-CCCCCccEEEecCCccCcccCccccccCcccc
Q 003945 164 KIVEFKMCYSRIE---ELWKGIKHLNMLKVMKLSHSENLIKTP--DF-TEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF 237 (784)
Q Consensus 164 ~L~~L~L~~~~i~---~l~~~~~~l~~L~~L~L~~~~~~~~~~--~l-~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~ 237 (784)
.|+.|.++++.-. .+-....+++++++|++.+|...+... .+ ..+++|++|++..|..++...-. . .-..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk--~--la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK--Y--LAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH--H--HHHh
Confidence 4455555554322 233445678888888888887444321 22 36788888888888776653211 0 1122
Q ss_pred cCCccEEEecCCCCCcc--ccccccCCCcCcEEEecCCCcc---ccChhhhcccCCceeeccCccCCCCCc--ccccccc
Q 003945 238 VESLKILILSGCLKLRK--FPHVVGSMECLQELLLDGTDIK---ELPLSIEHLFGLVQLTLNDCKNLSSLP--VAISSFQ 310 (784)
Q Consensus 238 l~~L~~L~ls~~~~~~~--~~~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~l~~l~ 310 (784)
+++|++|++++|..... +.....++..++.+...++.-. .+-..=.....+.++++..|..++... ..-..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 67788888888865433 3333445556666666543211 111111223345556666765554432 1123466
Q ss_pred ccCeEeecCCCCCccCc--ccccCCCCCCEEeccCcCC-ccc--CccccCCCCCCEEecCCCCCccc--ccccccCCCCC
Q 003945 311 CLRNLKLSGCSKLKKFP--QIVTTMEDLSELNLDGTSI-TEV--PSSIELLPGLELLNLNDCKNFAR--VPSSINGLKSL 383 (784)
Q Consensus 311 ~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~L~~~~i-~~l--p~~l~~l~~L~~L~L~~~~~~~~--l~~~~~~l~~L 383 (784)
.|++|+.++|......+ ....+.++|+.+.+.+++- +.. ..--.+.+.|+.+++.+|..... +...-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 78888888877654322 2234667888888887753 221 12235677888888888765433 33334567888
Q ss_pred CEEEccCCCCCCcC-----CCCCCCCCCccEEecCCCccc--cCCccccccccccEEecCCCCCCC
Q 003945 384 KTLNLSGCCKLENV-----PDTLGQVESLEELDISETAVR--RPPSSVFLMKNLRTLSFSGCNGPP 442 (784)
Q Consensus 384 ~~L~Ls~c~~l~~~-----~~~l~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~ 442 (784)
+.|.+++|...... ...-..+..|+.+.++++... ..-..+..+++|+.+++.+|....
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 88888888765533 333456778888888888765 334556678899999998888543
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.7e-09 Score=101.21 Aligned_cols=175 Identities=22% Similarity=0.310 Sum_probs=102.1
Q ss_pred CCCEEeccCcCCc--ccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCC--CCCCCCCCccEE
Q 003945 335 DLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP--DTLGQVESLEEL 410 (784)
Q Consensus 335 ~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~--~~l~~l~~L~~L 410 (784)
.|+.|++++..++ .+...+..+.+|+.|.+.++.....+...+..-.+|+.|++++|+..++.. -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4677777777776 444456778888888888888777777777788888888888887665432 123456666667
Q ss_pred ecCCCccccC--Cccccc-cccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCC
Q 003945 411 DISETAVRRP--PSSVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLG 487 (784)
Q Consensus 411 ~l~~~~i~~l--p~~~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~ 487 (784)
+++.|.+..- -..+.+ -++|+.|+++||.. ++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr--------------------------------------------nl~ 301 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR--------------------------------------------NLQ 301 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHh--------------------------------------------hhh
Confidence 7766654411 111111 24555555555541 111
Q ss_pred CCCCCcccCCCCCCCEEecCCCCCc--ccchhhhcCCCCCeeccccccccCcCCC------CCCCceEEEecCCcc
Q 003945 488 EGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRLQFLPQ------LPPNIIFVKVNGCSS 555 (784)
Q Consensus 488 ~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~i~~------lp~sL~~L~~~~C~~ 555 (784)
+..+..-...+++|..|||++|... ..-..+.+++.|++|.++.|..+- |+ --|+|.+|++.+|-+
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccccC
Confidence 1111112234555555555554322 233345677777777777776442 21 136778888887754
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=2.3e-06 Score=98.89 Aligned_cols=108 Identities=27% Similarity=0.404 Sum_probs=95.8
Q ss_pred ccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCc-ccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEcc
Q 003945 311 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 389 (784)
Q Consensus 311 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls 389 (784)
.++.|+|+++...+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999998888889999999999999999999998 788889999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCCCC-CCccEEecCCCccc
Q 003945 390 GCCKLENVPDTLGQV-ESLEELDISETAVR 418 (784)
Q Consensus 390 ~c~~l~~~~~~l~~l-~~L~~L~l~~~~i~ 418 (784)
+|...+.+|..++.. .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999999999887654 46778888888643
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=3.6e-06 Score=89.15 Aligned_cols=134 Identities=19% Similarity=0.372 Sum_probs=88.3
Q ss_pred ccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCC-ccccCCccccccccccEEecCCCCCCCCCCCccccccccc
Q 003945 377 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET-AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNL 455 (784)
Q Consensus 377 ~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 455 (784)
+..+.+++.|++++| .+..+|. -.++|+.|.+++| .++.+|..+ .++|+.|.+++|..+..
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s------------ 109 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG------------ 109 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc------------
Confidence 445688999999998 6666773 2457999999875 456677654 46899999998863322
Q ss_pred ccCccchhhccCCCCCCCCCCCEEecCCCCCCC-CCCCcccCCCCCCCEEecCCCCCc---ccchhhhcC-CCCCeeccc
Q 003945 456 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGE-GAIPSDIGNLHSLNELYLSKNNFV---TLPASINSL-LNLKELEME 530 (784)
Q Consensus 456 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~-~~~p~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l-~~L~~L~L~ 530 (784)
+| ++|+.|+++.+.... ..+| ++|+.|.+.+++.. .+| ..+ ++|+.|+++
T Consensus 110 ----------LP------~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is 164 (426)
T PRK15386 110 ----------LP------ESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARID---NLISPSLKTLSLT 164 (426)
T ss_pred ----------cc------cccceEEeCCCCCcccccCc------chHhheeccccccccccccc---cccCCcccEEEec
Confidence 12 357777776654321 2233 35777777553311 222 123 579999999
Q ss_pred cccccCcCCCCCCCceEEEecCC
Q 003945 531 DCKRLQFLPQLPPNIIFVKVNGC 553 (784)
Q Consensus 531 ~c~~L~~i~~lp~sL~~L~~~~C 553 (784)
+|..+...+.+|.+|+.|.+..+
T Consensus 165 ~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 165 GCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCCcccCcccccccCcEEEeccc
Confidence 99877644568999999998653
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.19 E-value=4.7e-08 Score=100.30 Aligned_cols=39 Identities=28% Similarity=0.466 Sum_probs=26.9
Q ss_pred CCccEEEcCCCCCCCCCC---CCCCCCCccEEEecCCccCcc
Q 003945 186 NMLKVMKLSHSENLIKTP---DFTEAPNLEELYLEGCTKLRK 224 (784)
Q Consensus 186 ~~L~~L~L~~~~~~~~~~---~l~~l~~L~~L~L~~~~~l~~ 224 (784)
..|+.|.++++.....-+ ...++|++++|.+.+|..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd 179 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD 179 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH
Confidence 467888888876544322 245788888888888875554
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=2.7e-07 Score=101.74 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=43.2
Q ss_pred CccEEEEecCCCCCCCCCC-CCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCC
Q 003945 142 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 219 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~ 219 (784)
.++.+.+..+.+...-... .+++|.+|++.+|.|+++...+..+++|++|++++|.+. .+..+..++.|+.|++.+|
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccc-cccchhhccchhhheeccC
Confidence 4444555555554433323 566666666666666666554566666666666666433 2334455555666666664
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=5.7e-07 Score=99.16 Aligned_cols=241 Identities=21% Similarity=0.193 Sum_probs=100.1
Q ss_pred CCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCcc
Q 003945 163 DKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 242 (784)
Q Consensus 163 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 242 (784)
..+..++++.+.+..+-..+..+.+|+.|++.+|.+......+..+++|++|++++| . |..+..+..+..|+
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~-------I~~i~~l~~l~~L~ 143 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-K-------ITKLEGLSTLTLLK 143 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-c-------cccccchhhccchh
Confidence 333444444444444333344444455555544433322222444445555555443 1 11222233333344
Q ss_pred EEEecCCCCCccccccccCCCcCcEEEecCCCccccChh-hhcccCCceeeccCccCCCCCccccccccccCeEeecCCC
Q 003945 243 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS 321 (784)
Q Consensus 243 ~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 321 (784)
.|++++|.+... ..+..+..|+.+++++|.+..+... ...+.+|+.+.+.++... .+. .+..+..+..+++..+.
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i~-~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EIE-GLDLLKKLVLLSLLDNK 219 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-ccc-chHHHHHHHHhhccccc
Confidence 455544433221 1122244444555555544444432 344444555555443211 111 12222233333333332
Q ss_pred CCccCcccccCCC--CCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCC---c
Q 003945 322 KLKKFPQIVTTME--DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE---N 396 (784)
Q Consensus 322 ~~~~~~~~~~~l~--~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~---~ 396 (784)
....-+ +..+. .|+.+++.++.+...+..+..++.+..|++.++.....- .+.....+..+....+.... .
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhh
Confidence 221111 01111 256666666666655555556666666666655543221 12223333333343333221 1
Q ss_pred CCC-CCCCCCCccEEecCCCcccc
Q 003945 397 VPD-TLGQVESLEELDISETAVRR 419 (784)
Q Consensus 397 ~~~-~l~~l~~L~~L~l~~~~i~~ 419 (784)
... .....+.++.+.+..+.+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hccccccccccccccccccCcccc
Confidence 111 14455667777777766553
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=3.6e-06 Score=64.92 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=29.5
Q ss_pred CccEEEEecCCCCCCCCCC--CCCCeeEEEeCCCCcccccc-cccCCCCccEEEcCCCC
Q 003945 142 KLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSE 197 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~ 197 (784)
+|++|++++|.+..+|... .+++|++|++++|.++.++. .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555555322 45555555555555555443 34555555555555543
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1e-07 Score=93.56 Aligned_cols=175 Identities=25% Similarity=0.298 Sum_probs=93.8
Q ss_pred ccEEEecCCCCCcc-ccccccCCCcCcEEEecCCCcc-ccChhhhcccCCceeeccCccCCCCCc--cccccccccCeEe
Q 003945 241 LKILILSGCLKLRK-FPHVVGSMECLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLP--VAISSFQCLRNLK 316 (784)
Q Consensus 241 L~~L~ls~~~~~~~-~~~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~ 316 (784)
|++|||+...++.. +-..+..+.+|+.|.+.++.+. .+...+.+-.+|+.|+++.|..++... ..+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 45555555444322 2334455666666666666664 445556666667777777666555422 2245566777777
Q ss_pred ecCCCCCccCcc-ccc-CCCCCCEEeccCcCCc----ccCccccCCCCCCEEecCCCCCccc-ccccccCCCCCCEEEcc
Q 003945 317 LSGCSKLKKFPQ-IVT-TMEDLSELNLDGTSIT----EVPSSIELLPGLELLNLNDCKNFAR-VPSSINGLKSLKTLNLS 389 (784)
Q Consensus 317 L~~~~~~~~~~~-~~~-~l~~L~~L~L~~~~i~----~lp~~l~~l~~L~~L~L~~~~~~~~-l~~~~~~l~~L~~L~Ls 389 (784)
++.|........ .+. --++|+.|+++|+.-. .+..-...+|+|.+|+|++|..+.. ....+.+++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 777655443211 111 1245666677665322 2222345677777777777765443 22345667777777777
Q ss_pred CCCCCCc-CCCCCCCCCCccEEecCCC
Q 003945 390 GCCKLEN-VPDTLGQVESLEELDISET 415 (784)
Q Consensus 390 ~c~~l~~-~~~~l~~l~~L~~L~l~~~ 415 (784)
.|..+.. ..-.+..+|+|.+|++.++
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEeccc
Confidence 7654321 1112344455555554443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=3.5e-06 Score=82.96 Aligned_cols=232 Identities=20% Similarity=0.205 Sum_probs=143.5
Q ss_pred ccccCeEeecCCCCCc--cCcccccCCCCCCEEeccCcCCc---ccCccccCCCCCCEEecCCCCCcccccccccCCCCC
Q 003945 309 FQCLRNLKLSGCSKLK--KFPQIVTTMEDLSELNLDGTSIT---EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 383 (784)
Q Consensus 309 l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~i~---~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L 383 (784)
...++.|-+.+|..-. .....-...+.++++++.+|.+. ++...+.++|.|+.|+|+.|.....+...-....+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 3344455555554332 22222335567788888888877 455567788888888888877654432211235677
Q ss_pred CEEEccCCCCC-CcCCCCCCCCCCccEEecCCCccccCC---ccccc-cccccEEecCCCCCCCCCCCcccccccccccC
Q 003945 384 KTLNLSGCCKL-ENVPDTLGQVESLEELDISETAVRRPP---SSVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 458 (784)
Q Consensus 384 ~~L~Ls~c~~l-~~~~~~l~~l~~L~~L~l~~~~i~~lp---~~~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~ 458 (784)
+.|-|.|.... +.....+..+|.+++|+++.|+.+.+- ..+.. -+.+++|.+.+|.....
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w--------------- 188 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLW--------------- 188 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHH---------------
Confidence 77777664321 122334556677777777777544221 11111 12445555555441110
Q ss_pred ccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccc--hhhhcCCCCCeeccccccccC
Q 003945 459 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP--ASINSLLNLKELEMEDCKRLQ 536 (784)
Q Consensus 459 ~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~ 536 (784)
.....--.-+|++..+-+..|++.+.........++.+-.|+|+.+++.+.. +.+..+++|..|.++++|...
T Consensus 189 -----~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 189 -----LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred -----HHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 0001112347888889999998876566667778889999999999998544 468899999999999999777
Q ss_pred cCCCCCCCceEEEecCCccceeecCc
Q 003945 537 FLPQLPPNIIFVKVNGCSSLVTLLGA 562 (784)
Q Consensus 537 ~i~~lp~sL~~L~~~~C~~L~~l~~~ 562 (784)
.+.. ..=+.|-+...+.++.+.++
T Consensus 264 ~l~~--~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 264 PLRG--GERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccC--CcceEEEEeeccceEEecCc
Confidence 6653 22345667778888888765
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.98 E-value=6.7e-08 Score=105.33 Aligned_cols=101 Identities=27% Similarity=0.278 Sum_probs=69.8
Q ss_pred CCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCC
Q 003945 335 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE 414 (784)
Q Consensus 335 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~ 414 (784)
.|...+.+.|.+..+..++..++.|+.|+|++|++.... .+..+++|++|+|+.|.. ..+|..-..-..|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchh-ccccccchhhhhheeeeecc
Confidence 466677778888877778888888888888888876543 566788888888888654 33333211122488888888
Q ss_pred CccccCCccccccccccEEecCCCC
Q 003945 415 TAVRRPPSSVFLMKNLRTLSFSGCN 439 (784)
Q Consensus 415 ~~i~~lp~~~~~l~~L~~L~l~~~~ 439 (784)
|.++++. .+.++++|+.|+++.|-
T Consensus 242 N~l~tL~-gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 242 NALTTLR-GIENLKSLYGLDLSYNL 265 (1096)
T ss_pred cHHHhhh-hHHhhhhhhccchhHhh
Confidence 8877653 45667777777776654
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.96 E-value=8.1e-06 Score=62.96 Aligned_cols=57 Identities=33% Similarity=0.542 Sum_probs=31.4
Q ss_pred CCCEEeccCcCCcccCc-cccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCC
Q 003945 335 DLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 391 (784)
Q Consensus 335 ~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c 391 (784)
+|++|++++|.++.+|. .+..+++|+.|++++|.+....+..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45566666666665553 3455555555555555554444445555555555555554
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.85 E-value=4.4e-07 Score=99.18 Aligned_cols=125 Identities=27% Similarity=0.293 Sum_probs=67.7
Q ss_pred CCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCcc
Q 003945 163 DKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 242 (784)
Q Consensus 163 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 242 (784)
..|...+.++|.+..+-.++.-++.|+.|||++|+..... .+..+++|++|||+.| .+..+|.
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~--------------- 226 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQ--------------- 226 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccc---------------
Confidence 4555666666666666666666667777777776654433 5566666666666664 3333331
Q ss_pred EEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCC--CCccccccccccCeEeecCC
Q 003945 243 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS--SLPVAISSFQCLRNLKLSGC 320 (784)
Q Consensus 243 ~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~L~~~ 320 (784)
+...+ + +|+.|.+++|.++++- ++.++.+|+.||+++|-..+ .+.. +..+..|+.|+|.||
T Consensus 227 -l~~~g-------------c-~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 227 -LSMVG-------------C-KLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGN 289 (1096)
T ss_pred -cchhh-------------h-hheeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCC
Confidence 11111 1 2555566666555543 45666666666666542221 1111 334556666666665
Q ss_pred C
Q 003945 321 S 321 (784)
Q Consensus 321 ~ 321 (784)
.
T Consensus 290 P 290 (1096)
T KOG1859|consen 290 P 290 (1096)
T ss_pred c
Confidence 4
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=7e-06 Score=80.90 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=42.1
Q ss_pred CCCCeeEEEeCCCCccc---ccccccCCCCccEEEcCCCCCCCCCCCC-CCCCCccEEEecC
Q 003945 161 QLDKIVEFKMCYSRIEE---LWKGIKHLNMLKVMKLSHSENLIKTPDF-TEAPNLEELYLEG 218 (784)
Q Consensus 161 ~l~~L~~L~L~~~~i~~---l~~~~~~l~~L~~L~L~~~~~~~~~~~l-~~l~~L~~L~L~~ 218 (784)
...+++.|+|.+|.|.. +..-+.++|.|++|+|+.|.....+..+ ..+.+|+.|.|.|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence 56777888888887764 3444678888888888888776665555 3566888888877
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=3.4e-05 Score=54.53 Aligned_cols=38 Identities=34% Similarity=0.580 Sum_probs=17.5
Q ss_pred CCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCccc
Q 003945 475 SLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL 514 (784)
Q Consensus 475 ~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l 514 (784)
+|++|++++|++. .+|..+++|++|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCCCC
Confidence 4455555555553 2444445555555555555544443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=5.3e-05 Score=53.58 Aligned_cols=42 Identities=31% Similarity=0.510 Sum_probs=35.1
Q ss_pred CCCCEEecCCCCCcccchhhhcCCCCCeeccccccccCcCCCC
Q 003945 499 HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQL 541 (784)
Q Consensus 499 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~i~~l 541 (784)
++|++|++++|+++.+|..+.+|++|+.|++++|+ ++.++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCC
Confidence 57999999999999999989999999999999995 6655543
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=4.5e-05 Score=88.00 Aligned_cols=109 Identities=25% Similarity=0.293 Sum_probs=73.2
Q ss_pred cCCccEEEecCCCCC-ccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCC-CCccccccccccCeE
Q 003945 238 VESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS-SLPVAISSFQCLRNL 315 (784)
Q Consensus 238 l~~L~~L~ls~~~~~-~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L 315 (784)
+|+|+.|.+++-... ..+-....++++|..||+++++++.+ .+++++++|+.|.+.+-.... .--..+.++++|++|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 666666776664432 23445567788899999999998888 788999999999887633222 111235568899999
Q ss_pred eecCCCCCccC------cccccCCCCCCEEeccCcCCc
Q 003945 316 KLSGCSKLKKF------PQIVTTMEDLSELNLDGTSIT 347 (784)
Q Consensus 316 ~L~~~~~~~~~------~~~~~~l~~L~~L~L~~~~i~ 347 (784)
|+|........ -+.-..+|+|+.|+.+++.+.
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99875443321 122235778888888887776
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.48 E-value=0.00022 Score=66.85 Aligned_cols=107 Identities=22% Similarity=0.248 Sum_probs=64.2
Q ss_pred CCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCC-CCCCccEEEecCCccCcccCccccccCcccccC
Q 003945 161 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFT-EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVE 239 (784)
Q Consensus 161 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~ 239 (784)
.+.....++|++|.+..+ ..+..+++|.+|.|.+|++....|.+. .+++|..|.+.+| ++. .++.+..|..++
T Consensus 40 ~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~----~l~dl~pLa~~p 113 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQ----ELGDLDPLASCP 113 (233)
T ss_pred cccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chh----hhhhcchhccCC
Confidence 344556677777776654 235567777777777777776666655 3456777777775 233 244556666666
Q ss_pred CccEEEecCCCCCccc---cccccCCCcCcEEEecCC
Q 003945 240 SLKILILSGCLKLRKF---PHVVGSMECLQELLLDGT 273 (784)
Q Consensus 240 ~L~~L~ls~~~~~~~~---~~~l~~l~~L~~L~l~~~ 273 (784)
.|++|.+-+|.....- ...+..+++|+.||+...
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6777776666543321 234455566666665543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=2.3e-05 Score=90.33 Aligned_cols=98 Identities=20% Similarity=0.258 Sum_probs=42.7
Q ss_pred CCcceEEEcCcccc-Cc----hhhcCcCccEEEEecCCCC--CCCCCC-CCCCeeEEEeCCCCcccccccccCCCCccEE
Q 003945 120 TNLGLLKINNVQLL-EG----LEYLSNKLRLLDWHRYPLK--SLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVM 191 (784)
Q Consensus 120 ~~Lr~L~l~~~~l~-~~----~~~l~~~Lr~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L 191 (784)
.+|+.|++++.... .+ +..+.+.||.|.+.+-.+. .+.... .+++|..||+++++++.+ .++++|+||++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 35566666554321 11 2222235555555543321 111112 444555555555555544 445555555555
Q ss_pred EcCCCCCCCC--CCCCCCCCCccEEEecC
Q 003945 192 KLSHSENLIK--TPDFTEAPNLEELYLEG 218 (784)
Q Consensus 192 ~L~~~~~~~~--~~~l~~l~~L~~L~L~~ 218 (784)
.+.+-.+... +.++.++++|++||++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 5544433321 22344445555555544
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.28 E-value=7.9e-05 Score=72.71 Aligned_cols=189 Identities=20% Similarity=0.216 Sum_probs=107.9
Q ss_pred HhcCCCcceEEEcCccccC-chhhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcc----c-------cccccc
Q 003945 116 FSLMTNLGLLKINNVQLLE-GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIE----E-------LWKGIK 183 (784)
Q Consensus 116 f~~~~~Lr~L~l~~~~l~~-~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~----~-------l~~~~~ 183 (784)
...|..+..+++++|.+.. ....+++.++ +-.+|+..+++.-... . +-+.+-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia----------------~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLl 89 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIA----------------NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALL 89 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHh----------------hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHh
Confidence 3446777777888777653 3333332111 2345555555542211 1 234467
Q ss_pred CCCCccEEEcCCCCCCCCCCC-----CCCCCCccEEEecCCccCcccC-c-------cccccCcccccCCccEEEecCCC
Q 003945 184 HLNMLKVMKLSHSENLIKTPD-----FTEAPNLEELYLEGCTKLRKVH-P-------SLLLHNKLIFVESLKILILSGCL 250 (784)
Q Consensus 184 ~l~~L~~L~L~~~~~~~~~~~-----l~~l~~L~~L~L~~~~~l~~~~-~-------~i~~l~~L~~l~~L~~L~ls~~~ 250 (784)
+||+|++.+||+|-+....|. ++..+.|+||.+++|. +..+. . .++..++...-+.|++.....|.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 889999999999987766442 6788999999999873 33221 1 12233444445778888877775
Q ss_pred CCcc----ccccccCCCcCcEEEecCCCccc------cChhhhcccCCceeeccCccCCCC----CccccccccccCeEe
Q 003945 251 KLRK----FPHVVGSMECLQELLLDGTDIKE------LPLSIEHLFGLVQLTLNDCKNLSS----LPVAISSFQCLRNLK 316 (784)
Q Consensus 251 ~~~~----~~~~l~~l~~L~~L~l~~~~i~~------lp~~i~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~ 316 (784)
.... ....+....+|+++.+..|.|.. +-..+..+++|+.|++.+|..... +...+...+.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 4332 22334444678888888887752 112345566777777776544322 111223344456666
Q ss_pred ecCCC
Q 003945 317 LSGCS 321 (784)
Q Consensus 317 L~~~~ 321 (784)
+.+|-
T Consensus 249 lnDCl 253 (388)
T COG5238 249 LNDCL 253 (388)
T ss_pred ccchh
Confidence 65554
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.15 E-value=0.00079 Score=63.25 Aligned_cols=107 Identities=20% Similarity=0.192 Sum_probs=76.7
Q ss_pred CcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccc-cCCCCccEEEcCCCCCCCC--CCCCCCCCCccEEEe
Q 003945 140 SNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGI-KHLNMLKVMKLSHSENLIK--TPDFTEAPNLEELYL 216 (784)
Q Consensus 140 ~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~L~~~~~~~~--~~~l~~l~~L~~L~L 216 (784)
-.+.-.+++++|.+..++..-.+++|.+|.+.+|+|..+-..+ ..+++|+.|.|.+|.+... +..+..+|+|++|.+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3567778888888877776558889999999999998886665 4467899999988876543 556778889999988
Q ss_pred cCCccCcccCccccccCcccccCCccEEEecCC
Q 003945 217 EGCTKLRKVHPSLLLHNKLIFVESLKILILSGC 249 (784)
Q Consensus 217 ~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~ 249 (784)
-+|+--..-. ..+.-+..+++|++||..+-
T Consensus 121 l~Npv~~k~~---YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKN---YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccC---ceeEEEEecCcceEeehhhh
Confidence 8874322211 12222344788888998764
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.11 E-value=1.9e-05 Score=69.00 Aligned_cols=77 Identities=10% Similarity=0.172 Sum_probs=42.1
Q ss_pred CccEEEEecCCCCCCCCCC--CCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecC
Q 003945 142 KLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEG 218 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~ 218 (784)
.|...++++|.++++|..| +++.++.|+|++|.+..+|.++..++.|+.|+++.|.+...+..+..+.+|-.|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 4555566666666666555 4455666666666666666555555566666555555444444343344444444433
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.99 E-value=0.00015 Score=70.83 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=33.1
Q ss_pred CCCCEEecCCCCCCCCCCC----cccCCCCCCCEEecCCCCCccc-----chhhhcCCCCCeeccccc
Q 003945 474 RSLTKLDLSDCGLGEGAIP----SDIGNLHSLNELYLSKNNFVTL-----PASINSLLNLKELEMEDC 532 (784)
Q Consensus 474 ~~L~~L~Ls~~~l~~~~~p----~~l~~l~~L~~L~L~~n~l~~l-----p~~i~~l~~L~~L~L~~c 532 (784)
..|+++.+..|.|....+. ..+..+.+|+.|||.+|-|+.. -..+..-+.|+.|.+.+|
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 4566777777766322111 1234567788888888877622 223334444666666666
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.77 E-value=8.4e-05 Score=65.10 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=62.3
Q ss_pred ccEEEEecCCCCCCCCCC----CCCCeeEEEeCCCCcccccccc-cCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEec
Q 003945 143 LRLLDWHRYPLKSLPSNL----QLDKIVEFKMCYSRIEELWKGI-KHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLE 217 (784)
Q Consensus 143 Lr~L~l~~~~l~~lp~~~----~l~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~ 217 (784)
+-.++++.|++..++... ...+|+..+|++|.++++|+.+ .+++-+++|+|++|++...+.++..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 344555666655444332 5667777777777777777665 34457777777777777666677777777777777
Q ss_pred CCccCcccCccccccCcccccCCccEEEecCCCC
Q 003945 218 GCTKLRKVHPSLLLHNKLIFVESLKILILSGCLK 251 (784)
Q Consensus 218 ~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~ 251 (784)
.|+ +...|.-+..+.+ |-.|+..++..
T Consensus 109 ~N~-l~~~p~vi~~L~~------l~~Lds~~na~ 135 (177)
T KOG4579|consen 109 FNP-LNAEPRVIAPLIK------LDMLDSPENAR 135 (177)
T ss_pred cCc-cccchHHHHHHHh------HHHhcCCCCcc
Confidence 763 4444444433333 33366555543
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.70 E-value=0.00021 Score=80.98 Aligned_cols=110 Identities=30% Similarity=0.497 Sum_probs=52.0
Q ss_pred ccCCceeeccCccCCCC--CccccccccccCeEeecCC-CCCccCc----ccccCCCCCCEEeccCcC-Cccc--Ccccc
Q 003945 285 LFGLVQLTLNDCKNLSS--LPVAISSFQCLRNLKLSGC-SKLKKFP----QIVTTMEDLSELNLDGTS-ITEV--PSSIE 354 (784)
Q Consensus 285 l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~L~~~-~~~~~~~----~~~~~l~~L~~L~L~~~~-i~~l--p~~l~ 354 (784)
.+.|+.|.+.+|..+.. +-.....++.|+.|++++| ......+ .....+.+|+.|+++.+. +++. .....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45666666666655554 3233455666777776652 2111111 122344555666665554 3321 11112
Q ss_pred CCCCCCEEecCCCCC-ccc-ccccccCCCCCCEEEccCCCCC
Q 003945 355 LLPGLELLNLNDCKN-FAR-VPSSINGLKSLKTLNLSGCCKL 394 (784)
Q Consensus 355 ~l~~L~~L~L~~~~~-~~~-l~~~~~~l~~L~~L~Ls~c~~l 394 (784)
.+++|+.|.+.+|.. ... +-.....+++|++|++++|...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 255666666555553 111 1122234555666666655544
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.44 E-value=0.00024 Score=80.46 Aligned_cols=34 Identities=35% Similarity=0.453 Sum_probs=18.4
Q ss_pred CCCccEEEcCCCCCCCC---CCCCCCCCCccEEEecC
Q 003945 185 LNMLKVMKLSHSENLIK---TPDFTEAPNLEELYLEG 218 (784)
Q Consensus 185 l~~L~~L~L~~~~~~~~---~~~l~~l~~L~~L~L~~ 218 (784)
+++|+.|.+..+..... .+....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 55666666665544433 23344566666666665
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0015 Score=64.18 Aligned_cols=79 Identities=25% Similarity=0.252 Sum_probs=40.1
Q ss_pred CccEEEEecCCCCCCCCCCCCCCeeEEEeCCC--Ccc-cccccccCCCCccEEEcCCCCCCCC--CCCCCCCCCccEEEe
Q 003945 142 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYS--RIE-ELWKGIKHLNMLKVMKLSHSENLIK--TPDFTEAPNLEELYL 216 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~--~i~-~l~~~~~~l~~L~~L~L~~~~~~~~--~~~l~~l~~L~~L~L 216 (784)
.|..|++.+..+.++...-.+++|++|.++.| .+. .++--..++++|++|++++|++... ++.+..+.+|..|++
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 44444455554444443335556666666666 222 2333344456666666666654421 334455555556666
Q ss_pred cCCc
Q 003945 217 EGCT 220 (784)
Q Consensus 217 ~~~~ 220 (784)
.+|.
T Consensus 124 ~n~~ 127 (260)
T KOG2739|consen 124 FNCS 127 (260)
T ss_pred ccCC
Confidence 5553
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.0032 Score=61.93 Aligned_cols=63 Identities=32% Similarity=0.452 Sum_probs=42.4
Q ss_pred CCCCCCCCEEecCCC--CCCCCCCCcccCCCCCCCEEecCCCCCcccc--hhhhcCCCCCeecccccc
Q 003945 470 LSGLRSLTKLDLSDC--GLGEGAIPSDIGNLHSLNELYLSKNNFVTLP--ASINSLLNLKELEMEDCK 533 (784)
Q Consensus 470 l~~l~~L~~L~Ls~~--~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~ 533 (784)
+..+++|+.|.++.| .+. ..++-....+|+|++|++++|++..+. ..+..+.+|..|++.+|+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 456678888888888 444 334444455688888888888877321 245667777777777775
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.00066 Score=66.72 Aligned_cols=95 Identities=21% Similarity=0.202 Sum_probs=58.6
Q ss_pred CCcceEEEcCccccC-ch-hhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCccccc--ccccCCCCccEEEcCC
Q 003945 120 TNLGLLKINNVQLLE-GL-EYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELW--KGIKHLNMLKVMKLSH 195 (784)
Q Consensus 120 ~~Lr~L~l~~~~l~~-~~-~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~--~~~~~l~~L~~L~L~~ 195 (784)
.+.+.|++.++.+.. .+ ..+| .|.+|.|+-|.++++...-.+++|++|.|+.|.|..+- ..++++++|++|.|..
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 345566666666553 12 3333 67777777777777766557777777777777776653 2356777777777777
Q ss_pred CCCCCCCC------CCCCCCCccEEE
Q 003945 196 SENLIKTP------DFTEAPNLEELY 215 (784)
Q Consensus 196 ~~~~~~~~------~l~~l~~L~~L~ 215 (784)
|.-....+ -+..+|||+.|+
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 66554432 144566666664
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.00041 Score=68.14 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=55.9
Q ss_pred CccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCC--CCCCCCCCCccEEEecCC
Q 003945 142 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIK--TPDFTEAPNLEELYLEGC 219 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~--~~~l~~l~~L~~L~L~~~ 219 (784)
+.+.|++-||.+.++.-..+++.|++|.|+-|.|+.+ +.+..|++|+.|.|..|.+... +.-+.++|+|+.|.|..|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 6677888888888877666888888888888888776 3456777777777777655433 334556666666666665
Q ss_pred ccCc
Q 003945 220 TKLR 223 (784)
Q Consensus 220 ~~l~ 223 (784)
+.-.
T Consensus 99 PCc~ 102 (388)
T KOG2123|consen 99 PCCG 102 (388)
T ss_pred Cccc
Confidence 4433
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.013 Score=34.33 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=12.8
Q ss_pred CCCEEecCCCCCcccchhhh
Q 003945 500 SLNELYLSKNNFVTLPASIN 519 (784)
Q Consensus 500 ~L~~L~L~~n~l~~lp~~i~ 519 (784)
+|++|+|++|+++.+|..++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 36667777776666666544
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.46 E-value=0.026 Score=33.06 Aligned_cols=21 Identities=0% Similarity=0.083 Sum_probs=15.4
Q ss_pred CeeEEEeCCCCcccccccccC
Q 003945 164 KIVEFKMCYSRIEELWKGIKH 184 (784)
Q Consensus 164 ~L~~L~L~~~~i~~l~~~~~~ 184 (784)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477788888887777776654
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.86 E-value=0.35 Score=43.30 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=26.3
Q ss_pred CCCCeeEEEeCCCCccccccc-ccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecC
Q 003945 161 QLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEG 218 (784)
Q Consensus 161 ~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~ 218 (784)
++.+|+.+.+.. .++.+++. +..+++|+.+.+.++-.......+..+++|+.+.+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS
T ss_pred CCCCCCEEEECC-CeeEeChhhcccccccccccccccccccceeeeecccccccccccc
Confidence 555677777664 45555443 5666677777776641111223466666677777744
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.52 E-value=0.049 Score=29.60 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=6.4
Q ss_pred CCCEEecCCCCCcccc
Q 003945 500 SLNELYLSKNNFVTLP 515 (784)
Q Consensus 500 ~L~~L~L~~n~l~~lp 515 (784)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.42 E-value=0.31 Score=43.65 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=22.5
Q ss_pred cccCCCCCCEEeccCcCCcccCc-cccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccC
Q 003945 329 IVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 390 (784)
Q Consensus 329 ~~~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~ 390 (784)
.+..+++|+.+.+..+ +..++. .+..+++|+.+.+.+ .....-...+..+++|+.+.+..
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 3444445555555443 443332 244444555555543 11111122334455555555543
No 74
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=88.99 E-value=0.31 Score=27.62 Aligned_cols=19 Identities=47% Similarity=1.121 Sum_probs=17.2
Q ss_pred CeeEEEeCCCCcccccccc
Q 003945 164 KIVEFKMCYSRIEELWKGI 182 (784)
Q Consensus 164 ~L~~L~L~~~~i~~l~~~~ 182 (784)
+|+.|+|++++++++|++.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 5899999999999999875
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.88 E-value=0.28 Score=26.61 Aligned_cols=11 Identities=9% Similarity=0.398 Sum_probs=3.1
Q ss_pred eeEEEeCCCCc
Q 003945 165 IVEFKMCYSRI 175 (784)
Q Consensus 165 L~~L~L~~~~i 175 (784)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.77 E-value=0.39 Score=29.32 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=16.1
Q ss_pred CCCCCEEecCCCCCcccchhh
Q 003945 498 LHSLNELYLSKNNFVTLPASI 518 (784)
Q Consensus 498 l~~L~~L~L~~n~l~~lp~~i 518 (784)
+++|++|+|++|++..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888887654
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.77 E-value=0.39 Score=29.32 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=16.1
Q ss_pred CCCCCEEecCCCCCcccchhh
Q 003945 498 LHSLNELYLSKNNFVTLPASI 518 (784)
Q Consensus 498 l~~L~~L~L~~n~l~~lp~~i 518 (784)
+++|++|+|++|++..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888887654
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=85.98 E-value=0.0044 Score=68.64 Aligned_cols=66 Identities=29% Similarity=0.349 Sum_probs=42.0
Q ss_pred CCCCCC-CCEEecCCCCCCCCC---CCcccCCC-CCCCEEecCCCCCc-----ccchhhhcCCCCCeecccccccc
Q 003945 470 LSGLRS-LTKLDLSDCGLGEGA---IPSDIGNL-HSLNELYLSKNNFV-----TLPASINSLLNLKELEMEDCKRL 535 (784)
Q Consensus 470 l~~l~~-L~~L~Ls~~~l~~~~---~p~~l~~l-~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~~L 535 (784)
+...++ +.+|++..|.+.+.. ....+..+ ..++.++++.|.++ .+...+..+++++.|.+++++..
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 334444 666777777775321 12233444 56788888888777 45566777778888888887643
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.68 E-value=0.0069 Score=67.15 Aligned_cols=91 Identities=30% Similarity=0.333 Sum_probs=55.1
Q ss_pred CCCccEEecCCCccccC-----Ccccccccc-ccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCC-CCC
Q 003945 404 VESLEELDISETAVRRP-----PSSVFLMKN-LRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGL-RSL 476 (784)
Q Consensus 404 l~~L~~L~l~~~~i~~l-----p~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l-~~L 476 (784)
..+++.|.+..|.++.. ...+...+. +..|++..|..... ......+.+... +.+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~------------------g~~~L~~~l~~~~~~l 264 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV------------------GVEKLLPCLSVLSETL 264 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH------------------HHHHHHHHhcccchhh
Confidence 45666666666665511 112233333 55566665552111 122334455555 788
Q ss_pred CEEecCCCCCCCCCC---CcccCCCCCCCEEecCCCCCc
Q 003945 477 TKLDLSDCGLGEGAI---PSDIGNLHSLNELYLSKNNFV 512 (784)
Q Consensus 477 ~~L~Ls~~~l~~~~~---p~~l~~l~~L~~L~L~~n~l~ 512 (784)
+.++++.|.+++... ...+..++.+++|.++.|.+.
T Consensus 265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 999999999875333 344667789999999999877
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.10 E-value=0.043 Score=52.92 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=45.2
Q ss_pred CccEEEEecCCCCCCCCCC-CCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCC
Q 003945 142 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 219 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~ 219 (784)
..++|+++.+++..+-..+ .+..|+.|+++.+.+..+|+.++.+..++.+++..|.....+-.....+.++++++.++
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 4555555555555555555 55566666666666666666666666666666655554444555555666666665554
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.05 E-value=0.4 Score=45.67 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=19.8
Q ss_pred CccEEecCCCcccc-CCccccccccccEEecCCCCCC
Q 003945 406 SLEELDISETAVRR-PPSSVFLMKNLRTLSFSGCNGP 441 (784)
Q Consensus 406 ~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l 441 (784)
.++.++.+++.|.. --..+..++.++.|.+.+|...
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~ 138 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF 138 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccch
Confidence 45666666666652 2233444555666666666543
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.58 E-value=0.2 Score=47.64 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=39.5
Q ss_pred CCCCCC-CCCCeeEEEeCCCCcccc-cccccCCCCccEEEcCCCCCCCC--CCCCC-CCCCccEEEecCCccCcc
Q 003945 155 SLPSNL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENLIK--TPDFT-EAPNLEELYLEGCTKLRK 224 (784)
Q Consensus 155 ~lp~~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~--~~~l~-~l~~L~~L~L~~~~~l~~ 224 (784)
++|... .-..++.++-+++.|-.. -+.+.+++.++.|.+.+|..... +..++ -.++|+.|++++|+.+++
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 444332 334567777777776543 23355666666667766655443 12222 356677777777765554
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.50 E-value=0.085 Score=50.99 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=72.2
Q ss_pred CHHHHhcCCCcceEEEcCccccC--chhhcCcCccEEEEecCCCCCCCCCC-CCCCeeEEEeCCCCcccccccccCCCCc
Q 003945 112 SAKAFSLMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNML 188 (784)
Q Consensus 112 ~~~~f~~~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L 188 (784)
+...+......+.|+++.+++.. .-......|..|+++.+.+..+|..+ ....++.+++..|+.++.|.+++.++++
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred chhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 34456667778888988887652 22233357888999999999999999 8999999999999999999999999999
Q ss_pred cEEEcCCCCCC
Q 003945 189 KVMKLSHSENL 199 (784)
Q Consensus 189 ~~L~L~~~~~~ 199 (784)
+++++.++.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 99999998744
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.97 E-value=1.5 Score=26.60 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.3
Q ss_pred CCCccEEecCCCccccCCcccc
Q 003945 404 VESLEELDISETAVRRPPSSVF 425 (784)
Q Consensus 404 l~~L~~L~l~~~~i~~lp~~~~ 425 (784)
+++|+.|++++|.++.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3577888888888888876543
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.97 E-value=1.5 Score=26.60 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.3
Q ss_pred CCCccEEecCCCccccCCcccc
Q 003945 404 VESLEELDISETAVRRPPSSVF 425 (784)
Q Consensus 404 l~~L~~L~l~~~~i~~lp~~~~ 425 (784)
+++|+.|++++|.++.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3577888888888888876543
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.26 E-value=1.5 Score=26.76 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=13.4
Q ss_pred CCCCEEecCCCCCcccch
Q 003945 499 HSLNELYLSKNNFVTLPA 516 (784)
Q Consensus 499 ~~L~~L~L~~n~l~~lp~ 516 (784)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367778888888777775
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=60.49 E-value=5.2 Score=23.68 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=8.2
Q ss_pred CCCCEEecCCCCCc
Q 003945 499 HSLNELYLSKNNFV 512 (784)
Q Consensus 499 ~~L~~L~L~~n~l~ 512 (784)
++|++|+|++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56777777777655
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=59.75 E-value=6.1 Score=24.00 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=8.6
Q ss_pred CCCCeeccccccccC
Q 003945 522 LNLKELEMEDCKRLQ 536 (784)
Q Consensus 522 ~~L~~L~L~~c~~L~ 536 (784)
++|+.|+|++|+.++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666666665443
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=56.08 E-value=9.7 Score=23.35 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=9.1
Q ss_pred CCCCEEecCCCCCcc
Q 003945 499 HSLNELYLSKNNFVT 513 (784)
Q Consensus 499 ~~L~~L~L~~n~l~~ 513 (784)
++|+.|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666666553
No 90
>COG4838 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.43 E-value=4.1 Score=31.76 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=18.3
Q ss_pred cccccccceeeceeEEEechhhh
Q 003945 756 LDQTTKQWTHFTSYNLYESDHDF 778 (784)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~ 778 (784)
+.+.+++.|+ +.||||||.+|-
T Consensus 27 IkVQldNLTl-PqCPlYEEVLDT 48 (92)
T COG4838 27 IKVQLDNLTL-PQCPLYEEVLDT 48 (92)
T ss_pred HHHHhhcCCC-CCCccHHHHHHH
Confidence 4577888886 999999998874
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=42.27 E-value=20 Score=22.25 Aligned_cols=14 Identities=50% Similarity=0.489 Sum_probs=10.0
Q ss_pred CCCCEEecCCCCCc
Q 003945 499 HSLNELYLSKNNFV 512 (784)
Q Consensus 499 ~~L~~L~L~~n~l~ 512 (784)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777765
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.18 E-value=6.2 Score=43.60 Aligned_cols=63 Identities=25% Similarity=0.322 Sum_probs=38.9
Q ss_pred CCCCeeEEEeCCCCccccc---ccccCCCCccEEEcCCCCCCCC-CCCCC--CCCCccEEEecCCccCc
Q 003945 161 QLDKIVEFKMCYSRIEELW---KGIKHLNMLKVMKLSHSENLIK-TPDFT--EAPNLEELYLEGCTKLR 223 (784)
Q Consensus 161 ~l~~L~~L~L~~~~i~~l~---~~~~~l~~L~~L~L~~~~~~~~-~~~l~--~l~~L~~L~L~~~~~l~ 223 (784)
+.+.+..++|++|++..+- .-....|+|++|+|++|..... .+++. +...|++|.+.||+--+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 6677778888888877542 2245678888888888732222 22232 23457777777765433
No 93
>PRK13666 hypothetical protein; Provisional
Probab=24.63 E-value=13 Score=30.14 Aligned_cols=22 Identities=23% Similarity=0.230 Sum_probs=17.8
Q ss_pred cccccccceeeceeEEEechhhh
Q 003945 756 LDQTTKQWTHFTSYNLYESDHDF 778 (784)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~ 778 (784)
+++.++..+. +.||+|||..|-
T Consensus 27 I~vQ~~nL~~-~qCPlyEEVlDT 48 (92)
T PRK13666 27 IKVQMDNLTM-PQCPLYEEVLDT 48 (92)
T ss_pred HHHHHhcccc-ccCchHHHHHHH
Confidence 4567788886 899999999873
Done!