Query 003945
Match_columns 784
No_of_seqs 571 out of 4998
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:07:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.2E-39 1.8E-43 382.1 32.3 443 116-560 174-721 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.3E-39 7.8E-44 385.2 25.6 394 142-541 270-723 (768)
3 3t6q_A CD180 antigen; protein- 100.0 4.7E-37 1.6E-41 356.8 35.2 405 109-535 46-536 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-36 5.5E-41 352.3 31.8 413 109-554 45-556 (606)
5 4eco_A Uncharacterized protein 100.0 8.3E-37 2.8E-41 354.9 24.2 350 172-556 192-600 (636)
6 4eco_A Uncharacterized protein 100.0 6E-37 2.1E-41 356.0 22.9 353 151-535 193-600 (636)
7 3vq2_A TLR4, TOLL-like recepto 100.0 4E-35 1.4E-39 340.5 35.4 406 120-562 32-539 (606)
8 4ecn_A Leucine-rich repeat pro 100.0 5.3E-36 1.8E-40 353.7 25.3 346 173-554 435-838 (876)
9 3t6q_A CD180 antigen; protein- 100.0 1.7E-34 5.8E-39 335.3 36.0 404 121-533 34-487 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 3.3E-35 1.1E-39 346.9 27.4 348 156-535 440-840 (876)
11 1ziw_A TOLL-like receptor 3; i 100.0 5.3E-33 1.8E-37 327.2 43.0 437 109-552 38-569 (680)
12 2z63_A TOLL-like receptor 4, v 100.0 3.6E-34 1.2E-38 330.1 30.0 411 109-553 41-528 (570)
13 2z63_A TOLL-like receptor 4, v 100.0 4.4E-34 1.5E-38 329.3 29.3 426 120-560 28-510 (570)
14 1ziw_A TOLL-like receptor 3; i 100.0 3E-33 1E-37 329.3 36.8 447 110-559 63-599 (680)
15 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-33 4E-38 339.5 30.8 81 469-551 475-555 (844)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-33 9.4E-38 321.1 27.8 398 120-554 26-508 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-33 9.5E-38 318.8 27.1 382 120-540 21-461 (520)
18 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-32 6E-37 329.3 35.4 421 119-553 23-536 (844)
19 2z7x_B TOLL-like receptor 1, v 100.0 6E-33 2E-37 316.0 27.4 399 123-562 3-462 (520)
20 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-32 1.8E-36 310.4 27.2 391 110-534 40-509 (549)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-31 9.4E-36 304.9 31.3 202 310-540 276-490 (562)
22 1o6v_A Internalin A; bacterial 100.0 9.2E-31 3.1E-35 293.3 32.4 341 142-534 47-387 (466)
23 3v47_A TOLL-like receptor 5B a 100.0 2.9E-31 9.9E-36 296.8 27.6 345 139-536 28-409 (455)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-30 3.8E-35 299.9 30.9 372 121-533 32-508 (562)
25 1o6v_A Internalin A; bacterial 100.0 2.2E-30 7.7E-35 290.1 31.6 349 117-517 43-393 (466)
26 3v47_A TOLL-like receptor 5B a 100.0 3.4E-30 1.2E-34 288.2 29.1 351 120-513 30-409 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 7.3E-30 2.5E-34 283.5 28.4 369 113-554 27-427 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 3.9E-29 1.3E-33 277.7 27.7 354 120-549 11-383 (454)
29 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-28 8.4E-33 285.0 32.8 401 121-554 53-578 (635)
30 4fmz_A Internalin; leucine ric 100.0 1.6E-28 5.5E-33 264.2 27.7 300 142-533 45-344 (347)
31 3bz5_A Internalin-J, INLJ; leu 100.0 4.6E-29 1.6E-33 277.4 23.8 346 113-539 35-391 (457)
32 4fmz_A Internalin; leucine ric 100.0 5.6E-28 1.9E-32 259.9 27.3 305 114-439 38-344 (347)
33 2id5_A Lingo-1, leucine rich r 100.0 1.1E-27 3.8E-32 269.4 29.2 311 123-439 14-331 (477)
34 4g8a_A TOLL-like receptor 4; l 100.0 5.5E-27 1.9E-31 273.6 34.3 398 123-553 34-552 (635)
35 2id5_A Lingo-1, leucine rich r 100.0 1.8E-27 6.2E-32 267.6 28.0 313 166-533 14-331 (477)
36 3bz5_A Internalin-J, INLJ; leu 100.0 3.4E-27 1.1E-31 262.3 29.8 323 141-533 42-366 (457)
37 3o6n_A APL1; leucine-rich repe 100.0 1.2E-27 4.1E-32 261.7 25.2 304 141-512 45-352 (390)
38 3oja_B Anopheles plasmodium-re 100.0 5.7E-27 2E-31 270.5 25.1 304 141-512 51-358 (597)
39 3o6n_A APL1; leucine-rich repe 99.9 4.2E-26 1.4E-30 249.4 27.8 258 240-533 70-329 (390)
40 3oja_B Anopheles plasmodium-re 99.9 8.8E-26 3E-30 260.6 27.9 257 241-533 77-335 (597)
41 1xku_A Decorin; proteoglycan, 99.9 2.7E-25 9.2E-30 237.1 27.0 239 142-439 32-274 (330)
42 1xku_A Decorin; proteoglycan, 99.9 6.7E-25 2.3E-29 234.0 25.4 287 119-439 30-330 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 5E-25 1.7E-29 235.2 24.2 283 142-439 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 99.9 6.2E-25 2.1E-29 234.4 24.8 239 164-439 34-275 (332)
45 1ogq_A PGIP-2, polygalacturona 99.9 7.9E-26 2.7E-30 238.9 16.6 251 240-539 51-308 (313)
46 1z7x_W Ribonuclease inhibitor; 99.9 2.9E-27 9.9E-32 264.8 -4.3 274 241-533 87-409 (461)
47 4fcg_A Uncharacterized protein 99.9 5.2E-24 1.8E-28 226.4 19.3 229 141-391 81-311 (328)
48 4fcg_A Uncharacterized protein 99.9 7.4E-24 2.5E-28 225.2 20.4 221 286-532 81-311 (328)
49 1z7x_W Ribonuclease inhibitor; 99.9 2.5E-27 8.7E-32 265.3 -6.8 354 120-513 3-412 (461)
50 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-24 4.4E-29 229.7 13.4 245 163-415 50-301 (313)
51 3ogk_B Coronatine-insensitive 99.9 4E-25 1.4E-29 255.6 -1.6 367 141-533 112-524 (592)
52 3zyj_A Leucine-rich repeat-con 99.9 6E-22 2E-26 219.9 24.0 243 265-533 45-290 (440)
53 2z66_A Variable lymphocyte rec 99.9 3.7E-22 1.3E-26 210.4 20.2 241 267-533 11-259 (306)
54 3zyi_A Leucine-rich repeat-con 99.9 7.1E-22 2.4E-26 220.1 22.8 243 265-533 56-301 (452)
55 2z80_A TOLL-like receptor 2, v 99.9 9.7E-23 3.3E-27 219.4 14.9 251 264-533 53-312 (353)
56 3g06_A SSPH2 (leucine-rich rep 99.9 5E-21 1.7E-25 218.9 29.7 255 121-439 41-295 (622)
57 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-23 8.3E-28 220.4 8.2 260 244-538 15-278 (317)
58 2z66_A Variable lymphocyte rec 99.9 5.2E-22 1.8E-26 209.2 18.2 244 144-419 10-262 (306)
59 3ogk_B Coronatine-insensitive 99.9 4.3E-25 1.5E-29 255.4 -6.0 373 161-554 110-524 (592)
60 3g06_A SSPH2 (leucine-rich rep 99.9 9.3E-21 3.2E-25 216.7 28.9 237 120-418 61-297 (622)
61 2z80_A TOLL-like receptor 2, v 99.9 2.3E-22 7.8E-27 216.5 13.6 269 142-418 32-314 (353)
62 2p1m_B Transport inhibitor res 99.9 1.7E-24 5.8E-29 250.5 -4.4 245 114-364 60-345 (594)
63 1wwl_A Monocyte differentiatio 99.9 6.5E-23 2.2E-27 216.6 6.2 246 259-533 39-307 (312)
64 1ozn_A Reticulon 4 receptor; N 99.9 5.3E-21 1.8E-25 199.2 19.6 170 267-438 15-187 (285)
65 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-21 8.8E-26 201.6 14.7 222 144-372 14-240 (285)
66 2p1m_B Transport inhibitor res 99.9 9.7E-24 3.3E-28 244.1 -5.0 268 115-389 100-405 (594)
67 3zyj_A Leucine-rich repeat-con 99.8 5.7E-20 1.9E-24 204.0 24.5 244 164-439 44-290 (440)
68 3zyi_A Leucine-rich repeat-con 99.8 6.2E-20 2.1E-24 204.4 24.4 244 164-439 55-301 (452)
69 3oja_A Leucine-rich immune mol 99.8 3.1E-21 1E-25 216.3 11.3 237 264-535 35-275 (487)
70 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-21 4.4E-26 207.1 6.3 238 238-509 33-272 (317)
71 1wwl_A Monocyte differentiatio 99.8 3.3E-21 1.1E-25 203.4 7.2 250 183-439 40-307 (312)
72 3oja_A Leucine-rich immune mol 99.8 6.9E-20 2.4E-24 205.2 16.8 222 277-533 21-248 (487)
73 1p9a_G Platelet glycoprotein I 99.8 2.4E-18 8.3E-23 179.1 21.7 174 311-533 32-206 (290)
74 1p9a_G Platelet glycoprotein I 99.8 3.2E-18 1.1E-22 178.2 21.9 203 259-512 6-208 (290)
75 2z62_A TOLL-like receptor 4, v 99.8 1.3E-18 4.3E-23 180.3 18.4 200 310-533 28-235 (276)
76 2o6q_A Variable lymphocyte rec 99.8 8.9E-18 3E-22 173.2 22.8 177 311-533 38-216 (270)
77 2o6q_A Variable lymphocyte rec 99.8 1.3E-17 4.4E-22 172.0 23.3 201 264-512 17-218 (270)
78 2z62_A TOLL-like receptor 4, v 99.8 5.1E-18 1.7E-22 175.7 19.8 219 145-392 11-235 (276)
79 3rfs_A Internalin B, repeat mo 99.8 8.2E-19 2.8E-23 181.2 12.9 152 283-438 38-191 (272)
80 2xwt_C Thyrotropin receptor; s 99.8 3E-18 1E-22 173.4 16.2 205 299-534 23-238 (239)
81 3rfs_A Internalin B, repeat mo 99.8 5.4E-18 1.8E-22 175.0 16.6 220 287-540 20-240 (272)
82 2ca6_A RAN GTPase-activating p 99.8 5.9E-20 2E-24 200.2 1.2 239 277-533 23-314 (386)
83 2ast_B S-phase kinase-associat 99.8 2E-19 6.9E-24 192.0 3.6 202 309-536 92-307 (336)
84 4ay9_X Follicle-stimulating ho 99.7 4.6E-17 1.6E-21 174.6 20.5 235 144-388 12-253 (350)
85 2xwt_C Thyrotropin receptor; s 99.7 3.3E-17 1.1E-21 165.7 17.6 196 264-509 32-236 (239)
86 4glp_A Monocyte differentiatio 99.7 1.5E-17 5.2E-22 175.2 15.0 226 207-439 62-305 (310)
87 2ast_B S-phase kinase-associat 99.7 1.8E-18 6E-23 184.7 7.9 219 165-391 49-282 (336)
88 2ca6_A RAN GTPase-activating p 99.7 3.2E-19 1.1E-23 194.4 2.1 257 164-439 10-314 (386)
89 4glp_A Monocyte differentiatio 99.7 1.1E-17 3.7E-22 176.3 13.1 197 310-533 91-305 (310)
90 1h6u_A Internalin H; cell adhe 99.7 4.2E-17 1.4E-21 171.4 17.5 189 142-347 42-230 (308)
91 1h6u_A Internalin H; cell adhe 99.7 4.5E-17 1.5E-21 171.2 17.7 191 307-533 38-228 (308)
92 4ay9_X Follicle-stimulating ho 99.7 1.4E-16 4.8E-21 170.8 19.6 223 266-540 12-241 (350)
93 3goz_A Leucine-rich repeat-con 99.7 1.4E-18 4.9E-23 187.3 3.0 251 244-512 3-297 (362)
94 3m19_A Variable lymphocyte rec 99.7 2.6E-16 8.9E-21 160.3 18.6 173 336-533 16-190 (251)
95 3m19_A Variable lymphocyte rec 99.7 1.1E-15 3.8E-20 155.5 18.9 174 264-439 15-190 (251)
96 3goz_A Leucine-rich repeat-con 99.7 2.8E-17 9.7E-22 177.1 5.7 249 267-533 2-295 (362)
97 3cvr_A Invasion plasmid antige 99.6 2.8E-15 9.7E-20 169.2 18.3 190 287-523 60-255 (571)
98 3cvr_A Invasion plasmid antige 99.6 1.4E-15 4.8E-20 171.7 15.4 182 121-328 60-248 (571)
99 1h6t_A Internalin B; cell adhe 99.6 3.4E-15 1.2E-19 155.4 15.1 171 306-534 42-212 (291)
100 1h6t_A Internalin B; cell adhe 99.6 3.4E-15 1.2E-19 155.4 13.3 191 265-515 26-216 (291)
101 1m9s_A Internalin B; cell inva 99.6 1.2E-14 4.2E-19 165.9 16.7 175 306-515 39-213 (605)
102 1dce_A Protein (RAB geranylger 99.6 3.5E-17 1.2E-21 185.8 -5.6 216 260-529 346-567 (567)
103 2o6s_A Variable lymphocyte rec 99.6 3.3E-14 1.1E-18 140.2 16.4 171 338-539 11-182 (208)
104 2o6s_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 141.9 14.3 46 470-523 144-190 (208)
105 2v9t_B SLIT homolog 2 protein 99.6 5E-14 1.7E-18 140.0 16.7 149 337-533 14-163 (220)
106 4ezg_A Putative uncharacterize 99.5 3.9E-14 1.3E-18 138.3 14.1 150 284-439 42-192 (197)
107 4ezg_A Putative uncharacterize 99.5 2.5E-14 8.6E-19 139.7 12.7 154 260-419 41-195 (197)
108 3e6j_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 138.4 16.9 148 337-533 22-170 (229)
109 1m9s_A Internalin B; cell inva 99.5 4.5E-14 1.5E-18 161.2 15.6 164 142-320 44-207 (605)
110 2xot_A Amphoterin-induced prot 99.5 7.7E-14 2.6E-18 150.0 16.3 170 338-533 22-200 (361)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 2.1E-13 7.1E-18 135.5 16.5 151 337-512 14-166 (220)
112 2v9t_B SLIT homolog 2 protein 99.5 2E-13 7E-18 135.6 15.4 151 266-418 14-165 (220)
113 1xeu_A Internalin C; cellular 99.5 2.2E-14 7.6E-19 146.8 8.4 166 309-533 18-183 (263)
114 1dce_A Protein (RAB geranylger 99.5 1.9E-15 6.4E-20 171.6 -2.1 121 311-435 442-567 (567)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 5.2E-13 1.8E-17 132.6 15.6 149 267-417 15-165 (220)
116 3e6j_A Variable lymphocyte rec 99.5 7.3E-13 2.5E-17 132.5 16.6 150 266-418 22-172 (229)
117 1xeu_A Internalin C; cellular 99.5 9.4E-14 3.2E-18 142.1 10.0 164 264-439 20-183 (263)
118 2xot_A Amphoterin-induced prot 99.5 4.1E-13 1.4E-17 144.3 14.6 172 266-439 21-200 (361)
119 2ell_A Acidic leucine-rich nuc 99.4 4.8E-13 1.6E-17 126.9 9.4 130 356-533 23-158 (168)
120 4b8c_D Glucose-repressible alc 99.4 1.6E-13 5.3E-18 160.8 5.5 153 255-415 216-369 (727)
121 2je0_A Acidic leucine-rich nuc 99.4 4.2E-13 1.4E-17 124.5 7.0 128 381-531 17-149 (149)
122 2je0_A Acidic leucine-rich nuc 99.3 2E-12 6.7E-17 119.9 8.7 128 309-437 16-149 (149)
123 4b8c_D Glucose-repressible alc 99.3 6E-13 2.1E-17 155.9 6.2 116 301-419 215-330 (727)
124 2ell_A Acidic leucine-rich nuc 99.3 5.6E-12 1.9E-16 119.4 11.1 127 263-391 24-157 (168)
125 1w8a_A SLIT protein; signaling 99.3 1.7E-11 5.7E-16 118.9 14.2 128 337-512 11-139 (192)
126 1a9n_A U2A', U2A'; complex (nu 99.3 1.2E-11 3.9E-16 118.2 9.9 61 471-533 85-151 (176)
127 3sb4_A Hypothetical leucine ri 99.3 2.5E-11 8.7E-16 128.6 13.1 125 309-435 201-328 (329)
128 2wfh_A SLIT homolog 2 protein 99.2 5.5E-11 1.9E-15 115.2 13.9 124 384-533 13-137 (193)
129 2wfh_A SLIT homolog 2 protein 99.2 8.2E-11 2.8E-15 114.0 15.0 127 337-512 13-139 (193)
130 1w8a_A SLIT protein; signaling 99.2 4.7E-11 1.6E-15 115.7 13.3 88 331-418 51-139 (192)
131 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.9E-15 111.4 15.7 130 337-514 10-139 (177)
132 1a9n_A U2A', U2A'; complex (nu 99.2 3.6E-11 1.2E-15 114.8 9.6 131 306-439 15-151 (176)
133 3sb4_A Hypothetical leucine ri 99.2 6.6E-11 2.3E-15 125.3 12.4 257 119-387 48-327 (329)
134 2o6r_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 107.7 13.1 111 310-420 28-139 (177)
135 2a5y_B CED-4; apoptosis; HET: 99.1 1.6E-11 5.6E-16 139.2 0.7 82 1-84 364-472 (549)
136 1ds9_A Outer arm dynein; leuci 99.1 9.1E-13 3.1E-17 128.6 -8.6 125 376-528 43-180 (198)
137 1ds9_A Outer arm dynein; leuci 99.1 3.4E-12 1.2E-16 124.5 -4.9 128 256-387 41-180 (198)
138 4fdw_A Leucine rich hypothetic 99.0 1.8E-08 6.3E-13 109.0 22.8 264 185-512 112-383 (401)
139 4fdw_A Leucine rich hypothetic 99.0 1.9E-08 6.5E-13 108.9 21.8 260 141-437 113-379 (401)
140 4fs7_A Uncharacterized protein 99.0 5.6E-08 1.9E-12 105.4 24.8 329 153-559 59-393 (394)
141 3g39_A Variable lymphocyte rec 99.0 2.2E-09 7.6E-14 101.5 10.9 66 467-533 47-113 (170)
142 2r9u_A Variable lymphocyte rec 99.0 2.5E-09 8.6E-14 101.5 11.0 100 408-533 15-116 (174)
143 3g39_A Variable lymphocyte rec 98.9 5.2E-09 1.8E-13 99.0 11.8 101 337-439 12-113 (170)
144 2r9u_A Variable lymphocyte rec 98.9 5.4E-09 1.9E-13 99.2 11.8 101 337-439 15-116 (174)
145 4fs7_A Uncharacterized protein 98.9 7.4E-08 2.5E-12 104.5 20.9 328 109-526 60-392 (394)
146 3un9_A NLR family member X1; l 98.7 3.9E-09 1.3E-13 113.1 1.1 87 333-419 154-253 (372)
147 3un9_A NLR family member X1; l 98.6 9.2E-10 3.1E-14 118.1 -4.0 107 333-439 71-194 (372)
148 2ifg_A High affinity nerve gro 98.6 1.1E-07 3.7E-12 101.3 10.6 100 339-439 13-114 (347)
149 4gt6_A Cell surface protein; l 98.5 1.4E-05 4.9E-10 86.3 24.7 60 470-532 307-367 (394)
150 3sfz_A APAF-1, apoptotic pepti 98.5 1.4E-08 4.7E-13 127.5 0.7 82 2-83 366-452 (1249)
151 2ifg_A High affinity nerve gro 98.5 4.8E-07 1.6E-11 96.2 11.9 104 315-420 13-118 (347)
152 4gt6_A Cell surface protein; l 98.5 1.2E-05 4E-10 87.0 23.1 154 110-273 53-215 (394)
153 2ra8_A Uncharacterized protein 98.5 1.1E-07 3.8E-12 100.9 6.4 59 280-341 166-226 (362)
154 1vt4_I APAF-1 related killer D 98.5 1.7E-08 5.8E-13 117.3 -0.7 75 2-76 357-436 (1221)
155 2ra8_A Uncharacterized protein 98.4 1.3E-07 4.3E-12 100.6 5.2 135 302-439 164-318 (362)
156 1z6t_A APAF-1, apoptotic prote 98.2 2.8E-07 9.6E-12 105.7 2.3 106 3-108 367-496 (591)
157 4h09_A Hypothetical leucine ri 98.2 0.00021 7E-09 76.7 23.7 59 469-529 281-340 (379)
158 4h09_A Hypothetical leucine ri 98.1 0.00061 2.1E-08 73.0 24.0 104 306-413 236-341 (379)
159 1io0_A Tropomodulin; LRR prote 97.9 2.6E-06 8.7E-11 81.4 0.7 61 473-533 92-162 (185)
160 3e4g_A ATP synthase subunit S, 97.7 1E-05 3.6E-10 75.3 1.8 83 474-558 61-154 (176)
161 3e4g_A ATP synthase subunit S, 97.7 1.3E-05 4.3E-10 74.7 2.1 69 155-223 52-128 (176)
162 1io0_A Tropomodulin; LRR prote 97.6 1.5E-05 5E-10 76.1 2.2 65 306-370 32-106 (185)
163 3rw6_A Nuclear RNA export fact 97.1 0.00035 1.2E-08 70.1 5.0 62 309-371 169-234 (267)
164 3rw6_A Nuclear RNA export fact 97.1 0.00042 1.4E-08 69.5 5.3 41 238-278 169-211 (267)
165 3rfe_A Platelet glycoprotein I 94.7 0.045 1.5E-06 48.2 5.8 51 145-196 12-65 (130)
166 3rfe_A Platelet glycoprotein I 94.1 0.054 1.8E-06 47.6 5.0 54 123-176 11-68 (130)
167 1pgv_A TMD-1, tropomodulin TMD 94.0 0.014 4.7E-07 55.3 1.0 12 475-486 99-110 (197)
168 1pgv_A TMD-1, tropomodulin TMD 93.1 0.036 1.2E-06 52.4 2.3 62 309-370 40-111 (197)
169 2lz0_A Uncharacterized protein 20.4 1.2E+02 0.0041 24.5 4.6 38 181-218 15-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.2e-39 Score=382.12 Aligned_cols=443 Identities=20% Similarity=0.205 Sum_probs=302.0
Q ss_pred HhcCCCcceEEEcCccccCchh-hcCcCccEEEEecCCCCCCCCCC-CCCCeeEEEeCCCCcc-cccccccCCCCccEEE
Q 003945 116 FSLMTNLGLLKINNVQLLEGLE-YLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIE-ELWKGIKHLNMLKVMK 192 (784)
Q Consensus 116 f~~~~~Lr~L~l~~~~l~~~~~-~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~ 192 (784)
+.++++|+.|++++|.+.+... ....+|++|++++|.+...+..+ .+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 5667777777777777654321 22358889999888886644446 8889999999999887 4678888899999999
Q ss_pred cCCCCCCCCCCCCCCCCCccEEEecCCccCcccCcccccc-Cccc------------------ccCCccEEEecCCCCCc
Q 003945 193 LSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLH-NKLI------------------FVESLKILILSGCLKLR 253 (784)
Q Consensus 193 L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l-~~L~------------------~l~~L~~L~ls~~~~~~ 253 (784)
+++|.....+|.. .+++|++|++++|.....+|..++.. .+|+ .+++|++|++++|.+.+
T Consensus 254 Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 254 ISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 9888776555554 67777777777765444555554432 2222 13455556666665555
Q ss_pred ccccc-ccCCCcCcEEEecCCCcc-ccChhhhccc-CCceeeccCc--------------------------cCCCCCcc
Q 003945 254 KFPHV-VGSMECLQELLLDGTDIK-ELPLSIEHLF-GLVQLTLNDC--------------------------KNLSSLPV 304 (784)
Q Consensus 254 ~~~~~-l~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~L~~~--------------------------~~~~~lp~ 304 (784)
.+|.. ++++++|++|++++|.+. .+|..+..++ +|+.|++++| ...+.+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 55544 566666666666666554 4555554444 4444444433 22234445
Q ss_pred ccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCc-ccCccccCCCCCCEEecCCCCCcccccccccCCCCC
Q 003945 305 AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 383 (784)
Q Consensus 305 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L 383 (784)
.+..+++|++|++++|...+..|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 5555666666666666655566666666666777777766666 556666677777777777777777777777777777
Q ss_pred CEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc-cCCccccccccccEEecCCCCCCCCCCCcccc----ccccc---
Q 003945 384 KTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLH----LPFNL--- 455 (784)
Q Consensus 384 ~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~----~~l~~--- 455 (784)
++|++++|...+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|......+..... .....
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 77777777777777777777777777777777776 56777777777888877777632111111000 00000
Q ss_pred -----------------------------------------ccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcc
Q 003945 456 -----------------------------------------MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 494 (784)
Q Consensus 456 -----------------------------------------~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~ 494 (784)
....+...+..|..++.+++|+.|++++|.++ +.+|..
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~ 651 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKE 651 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCHH
Confidence 00113345566778889999999999999997 789999
Q ss_pred cCCCCCCCEEecCCCCCc-ccchhhhcCCCCCeeccccccccCcCCCC---CCCceEEEecCCccceeec
Q 003945 495 IGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNGCSSLVTLL 560 (784)
Q Consensus 495 l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~i~~l---p~sL~~L~~~~C~~L~~l~ 560 (784)
++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+.-..+|+. .++|+.|+++++.--..+|
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 999999999999999999 89999999999999999999877777753 2568888888776444444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-39 Score=385.18 Aligned_cols=394 Identities=22% Similarity=0.280 Sum_probs=292.4
Q ss_pred CccEEEEecCCCC-CCCCCC-C-CCCeeEEEeCCCCcc-cccccccCCCCccEEEcCCCCCCCCCC-C-CCCCCCccEEE
Q 003945 142 KLRLLDWHRYPLK-SLPSNL-Q-LDKIVEFKMCYSRIE-ELWKGIKHLNMLKVMKLSHSENLIKTP-D-FTEAPNLEELY 215 (784)
Q Consensus 142 ~Lr~L~l~~~~l~-~lp~~~-~-l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~-l~~l~~L~~L~ 215 (784)
+|++|++++|.+. .+|..+ . +++|++|++++|.+. .+|..++.+++|++|++++|.....+| . +..+++|++|+
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 4444444444443 444444 2 255555555555554 244555555555555555554442332 2 45555555555
Q ss_pred ecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccC--CCcCcEEEecCCCcc-ccChhhhcccCCceee
Q 003945 216 LEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGS--MECLQELLLDGTDIK-ELPLSIEHLFGLVQLT 292 (784)
Q Consensus 216 L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~--l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~ 292 (784)
+++|.....+|..+..+. ++|++|++++|.+.+.+|..+.. +++|++|++++|.+. .+|..+..+++|+.|+
T Consensus 350 Ls~n~l~~~~p~~l~~l~-----~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 350 LSFNEFSGELPESLTNLS-----ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp CCSSEEEECCCTTHHHHT-----TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred CcCCccCccccHHHHhhh-----cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence 555533334443333221 26777888888887777777776 788999999999887 7888999999999999
Q ss_pred ccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCc-ccCccccCCCCCCEEecCCCCCcc
Q 003945 293 LNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFA 371 (784)
Q Consensus 293 L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~ 371 (784)
+++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 9998877788988999999999999999988899999999999999999999998 678889999999999999999999
Q ss_pred cccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc-cCCccccccccccEEecCCCCC--------CC
Q 003945 372 RVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNG--------PP 442 (784)
Q Consensus 372 ~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~--------l~ 442 (784)
.+|.+++.+++|++|++++|...+.+|..++.+++|+.|++++|.+. .+|..++....+..+.+..... ..
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 99999999999999999999999999999999999999999999887 6776665544433332222100 00
Q ss_pred ---------------------------------------CCCCccccccccccc-CccchhhccCCCCCCCCCCCEEecC
Q 003945 443 ---------------------------------------SSASWHLHLPFNLMG-KSSCLVALMLPSLSGLRSLTKLDLS 482 (784)
Q Consensus 443 ---------------------------------------~~~~~~~~~~l~~~~-~~~~~~~~~~~~l~~l~~L~~L~Ls 482 (784)
..........+..++ ..+.+.+.+|..++.+++|+.|+|+
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 664 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECC
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCc
Confidence 000000011122222 2234566788899999999999999
Q ss_pred CCCCCCCCCCcccCCCCCCCEEecCCCCCc-ccchhhhcCCCCCeeccccccccCcCCCC
Q 003945 483 DCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL 541 (784)
Q Consensus 483 ~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~i~~l 541 (784)
+|.++ +.+|..++.+++|++|+|++|+++ .+|..+..+++|+.|+|++|+.-..+|+.
T Consensus 665 ~N~l~-g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 665 HNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SSCCC-SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CCccC-CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 99997 789999999999999999999999 89999999999999999999988888864
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.7e-37 Score=356.79 Aligned_cols=405 Identities=19% Similarity=0.195 Sum_probs=240.4
Q ss_pred cccCHHHHhcCCCcceEEEcCccccC----chhhcCcCccEEEEecCCCCCC-CCCC-CCCCeeEEEeCCCCcccc-ccc
Q 003945 109 VHLSAKAFSLMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSL-PSNL-QLDKIVEFKMCYSRIEEL-WKG 181 (784)
Q Consensus 109 ~~~~~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~~~i~~l-~~~ 181 (784)
..+.+.+|.++++|++|++++|.+.. .+..+ .+|++|++++|.+..+ |..+ .+++|++|++++|.++.+ +..
T Consensus 46 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~ 124 (606)
T 3t6q_A 46 PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124 (606)
T ss_dssp SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSC
T ss_pred CcCChhHhccCccceEEECCCCccceeChhhccCc-cccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcch
Confidence 44567789999999999999988753 23444 4899999999998776 4556 899999999999999987 677
Q ss_pred ccCCCCccEEEcCCCCCCCC-CCCCCCCCCccEEEecCCccCcccCccccccCccccc-------------------C--
Q 003945 182 IKHLNMLKVMKLSHSENLIK-TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV-------------------E-- 239 (784)
Q Consensus 182 ~~~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l-------------------~-- 239 (784)
+.++++|++|++++|.+... +|.+..+++|++|++++|......+..++.+.+|+.+ .
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L 204 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEE
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccc
Confidence 89999999999999988764 5777779999999999874332223334444433310 1
Q ss_pred --------------------------------------------------CccEEEecCCCCCccccccccCCCcCcEEE
Q 003945 240 --------------------------------------------------SLKILILSGCLKLRKFPHVVGSMECLQELL 269 (784)
Q Consensus 240 --------------------------------------------------~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~ 269 (784)
+|+.|++++|.+....+..++.+++|++|+
T Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp EEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred cccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 334444444444444444455555555555
Q ss_pred ecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcc-cccCCCCCCEEeccCcCCcc
Q 003945 270 LDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQ-IVTTMEDLSELNLDGTSITE 348 (784)
Q Consensus 270 l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~i~~ 348 (784)
+++|.++.+|..+..+++|+.|++++|......|..+..+++|++|++++|.....++. .+..+++|++|++++|.+..
T Consensus 285 l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp CTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred ccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence 55555555555555555555555555433333344445555555555555544433322 24455555555555555543
Q ss_pred c---CccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCC-CCCCCCCccEEecCCCccccC-Ccc
Q 003945 349 V---PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRP-PSS 423 (784)
Q Consensus 349 l---p~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~-~l~~l~~L~~L~l~~~~i~~l-p~~ 423 (784)
+ +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|...+..+. .+..+++|+.|++++|.+... |..
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence 3 33445555555555555554444444555555555555555544443332 244555555555555555432 333
Q ss_pred ccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCE
Q 003945 424 VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNE 503 (784)
Q Consensus 424 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~ 503 (784)
+..+++|++|++++|..... ....+..+..+++|++|++++|.+. +..|..++.+++|++
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~-------------------~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKG-------------------NIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGG-------------------EECSSCGGGGCTTCCEEECTTSCCC-EECTTTTTTCTTCCE
T ss_pred HhCCCCCCEEECCCCCCCcc-------------------ccccchhhccCCCccEEECCCCccC-ccChhhhccccCCCE
Confidence 44455555555555441100 0011234566777777777777775 445666777777777
Q ss_pred EecCCCCCc-ccchhhhcCCCCCeecccccccc
Q 003945 504 LYLSKNNFV-TLPASINSLLNLKELEMEDCKRL 535 (784)
Q Consensus 504 L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L 535 (784)
|+|++|+++ ..|..+..+++| .|++++|+.-
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred EECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 777777776 345567777777 7777777533
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-36 Score=352.32 Aligned_cols=413 Identities=21% Similarity=0.238 Sum_probs=337.3
Q ss_pred cccCHHHHhcCCCcceEEEcCccccCc----hhhcCcCccEEEEecCCCCCC-CCCC-CCCCeeEEEeCCCCccccc-cc
Q 003945 109 VHLSAKAFSLMTNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSL-PSNL-QLDKIVEFKMCYSRIEELW-KG 181 (784)
Q Consensus 109 ~~~~~~~f~~~~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~~~i~~l~-~~ 181 (784)
..+...+|.++++|+.|++++|.+... +..+ ++||+|++++|.+..+ |..+ ++++|++|++++|.+..++ ..
T Consensus 45 ~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 123 (606)
T 3vq2_A 45 KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123 (606)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC
T ss_pred CEeChhhccCCccCcEEeCCCCcccccCHHHhhch-hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccc
Confidence 455667899999999999999887643 3333 5899999999999888 6667 8999999999999998876 67
Q ss_pred ccCCCCccEEEcCCCCCCC-C-CCCCCCCCCccEEEecCCccCcccCccccccCcccc---------------------c
Q 003945 182 IKHLNMLKVMKLSHSENLI-K-TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF---------------------V 238 (784)
Q Consensus 182 ~~~l~~L~~L~L~~~~~~~-~-~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~---------------------l 238 (784)
++++++|++|++++|.+.. . +..++++++|++|++++|......+..++.+.+++. .
T Consensus 124 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~ 203 (606)
T 3vq2_A 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC
Confidence 8999999999999998775 3 456899999999999997433333333444333321 2
Q ss_pred CCccEEEecCCCCC----------------------------------------------------------cccccccc
Q 003945 239 ESLKILILSGCLKL----------------------------------------------------------RKFPHVVG 260 (784)
Q Consensus 239 ~~L~~L~ls~~~~~----------------------------------------------------------~~~~~~l~ 260 (784)
.+|+.|++++|... +..|. +.
T Consensus 204 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~ 282 (606)
T 3vq2_A 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FH 282 (606)
T ss_dssp CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CG
T ss_pred ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cc
Confidence 36778888777543 12233 66
Q ss_pred CCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEe
Q 003945 261 SMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 340 (784)
Q Consensus 261 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 340 (784)
.+++|+.|+++++.+..+| .+..+++|+.|++.+|.. +.+|. + .+++|++|++++|...... .+..+++|+.|+
T Consensus 283 ~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 356 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLD 356 (606)
T ss_dssp GGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEE
T ss_pred cCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEE
Confidence 7889999999999999999 899999999999999876 88885 5 8999999999999666554 566899999999
Q ss_pred ccCcCCccc---CccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCC-CCCCCCCCccEEecCCCc
Q 003945 341 LDGTSITEV---PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDISETA 416 (784)
Q Consensus 341 L~~~~i~~l---p~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~-~~l~~l~~L~~L~l~~~~ 416 (784)
+++|.++.. |..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|...+..| ..+..+++|+.|++++|.
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 999999865 7778999999999999998554 66888999999999999998888777 678999999999999999
Q ss_pred ccc-CCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhh-ccCCCCCCCCCCCEEecCCCCCCCCCCCcc
Q 003945 417 VRR-PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVA-LMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 494 (784)
Q Consensus 417 i~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~ 494 (784)
+.. .|..+..+++|++|++++|. +.+ ..|..++.+++|++|++++|.++ +..|..
T Consensus 436 l~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~ 492 (606)
T 3vq2_A 436 TKIDFDGIFLGLTSLNTLKMAGNS----------------------FKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGV 492 (606)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCE----------------------EGGGEECSCCTTCTTCCEEECTTSCCC-EECTTT
T ss_pred CCccchhhhcCCCCCCEEECCCCc----------------------CCCcchHHhhccCCCCCEEECCCCcCC-ccChhh
Confidence 986 56778899999999999987 222 24777899999999999999996 567788
Q ss_pred cCCCCCCCEEecCCCCCccc-chhhhcCCCCCeeccccccccCcCCC----CCCCceEEEecCCc
Q 003945 495 IGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQ----LPPNIIFVKVNGCS 554 (784)
Q Consensus 495 l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~i~~----lp~sL~~L~~~~C~ 554 (784)
++.+++|++|+|++|+++.+ |..+..+++|+.|+|++|+ ++.+|. +|.+|+.|++.+++
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 99999999999999999965 7889999999999999997 666664 45567777777654
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.3e-37 Score=354.87 Aligned_cols=350 Identities=15% Similarity=0.196 Sum_probs=277.2
Q ss_pred CCCcccccccccCCCCccEEEcCCCCCCC------------------CCCCCC--CCCCccEEEecCCccCcccCccccc
Q 003945 172 YSRIEELWKGIKHLNMLKVMKLSHSENLI------------------KTPDFT--EAPNLEELYLEGCTKLRKVHPSLLL 231 (784)
Q Consensus 172 ~~~i~~l~~~~~~l~~L~~L~L~~~~~~~------------------~~~~l~--~l~~L~~L~L~~~~~l~~~~~~i~~ 231 (784)
+|+++.+|..++++++|++|+|++|.+.. .++.++ ++++|++|++++|.....+|..++.
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 35666788888888889999998888777 556677 8888888888888767777765554
Q ss_pred cCcccccCCccEEEecCCC-CCc-cccccccCC------CcCcEEEecCCCccccCh--hhhcccCCceeeccCccCCCC
Q 003945 232 HNKLIFVESLKILILSGCL-KLR-KFPHVVGSM------ECLQELLLDGTDIKELPL--SIEHLFGLVQLTLNDCKNLSS 301 (784)
Q Consensus 232 l~~L~~l~~L~~L~ls~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~ 301 (784)
+++|++|++++|. +.+ .+|..++++ ++|++|++++|.++.+|. .+..+++|+.|++++|...+.
T Consensus 272 ------l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 272 ------LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp ------CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred ------CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc
Confidence 4556668888887 666 788877776 888888888888888888 888888888888888766557
Q ss_pred CccccccccccCeEeecCCCCCccCcccccCCCC-CCEEeccCcCCcccCccccCCC--CCCEEecCCCCCccccccccc
Q 003945 302 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED-LSELNLDGTSITEVPSSIELLP--GLELLNLNDCKNFARVPSSIN 378 (784)
Q Consensus 302 lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~-L~~L~L~~~~i~~lp~~l~~l~--~L~~L~L~~~~~~~~l~~~~~ 378 (784)
+| .+..+++|++|++++|... .+|..+..+++ |++|++++|.++.+|..+..++ +|+.|++++|.+.+..|..+.
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred hh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 88 6888888888888887655 77777888888 8899998888888888776654 888999998888888887777
Q ss_pred -------CCCCCCEEEccCCCCCCcCCCC-CCCCCCccEEecCCCccccCCcccccc--------ccccEEecCCCCCCC
Q 003945 379 -------GLKSLKTLNLSGCCKLENVPDT-LGQVESLEELDISETAVRRPPSSVFLM--------KNLRTLSFSGCNGPP 442 (784)
Q Consensus 379 -------~l~~L~~L~Ls~c~~l~~~~~~-l~~l~~L~~L~l~~~~i~~lp~~~~~l--------~~L~~L~l~~~~~l~ 442 (784)
.+++|++|++++|... .+|.. +..+++|+.|++++|.++.+|...... ++|+.|++++|...
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 501 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT- 501 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-
T ss_pred ccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-
Confidence 7778889999888766 55554 445788899999988888888765542 28888888888722
Q ss_pred CCCCcccccccccccCccchhhccCCCCC--CCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecC------CCCCc-c
Q 003945 443 SSASWHLHLPFNLMGKSSCLVALMLPSLS--GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS------KNNFV-T 513 (784)
Q Consensus 443 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~--~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~------~n~l~-~ 513 (784)
.+|..+. .+++|++|+|++|.+.. +|..+..+++|+.|+|+ +|++. .
T Consensus 502 ----------------------~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 502 ----------------------KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp ----------------------BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred ----------------------ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCccccc
Confidence 2355565 88899999999999863 88888899999999995 45555 7
Q ss_pred cchhhhcCCCCCeeccccccccCcCCC-CCCCceEEEecCCccc
Q 003945 514 LPASINSLLNLKELEMEDCKRLQFLPQ-LPPNIIFVKVNGCSSL 556 (784)
Q Consensus 514 lp~~i~~l~~L~~L~L~~c~~L~~i~~-lp~sL~~L~~~~C~~L 556 (784)
+|..+..+++|+.|+|++|+. +.+|. ++++|+.|++++++-.
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNI 600 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTC
T ss_pred ChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCc
Confidence 888899999999999999975 77775 6678888888887633
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6e-37 Score=356.04 Aligned_cols=353 Identities=16% Similarity=0.192 Sum_probs=305.1
Q ss_pred CCCCCCCCCC-CCCCeeEEEeCCCCccc------------------cccccc--CCCCccEEEcCCCCCCCCCC-CCCCC
Q 003945 151 YPLKSLPSNL-QLDKIVEFKMCYSRIEE------------------LWKGIK--HLNMLKVMKLSHSENLIKTP-DFTEA 208 (784)
Q Consensus 151 ~~l~~lp~~~-~l~~L~~L~L~~~~i~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~~~-~l~~l 208 (784)
|.+..+|..+ ++++|++|+|++|.+.. +|..+. ++++|++|+|++|.....+| .++++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3444588888 99999999999999998 999999 99999999999998777655 69999
Q ss_pred CCccEEEecCCccCc--ccCccccccCcccccCCccEEEecCCCCCccccc--cccCCCcCcEEEecCCCcc-ccChhhh
Q 003945 209 PNLEELYLEGCTKLR--KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPH--VVGSMECLQELLLDGTDIK-ELPLSIE 283 (784)
Q Consensus 209 ~~L~~L~L~~~~~l~--~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~--~l~~l~~L~~L~l~~~~i~-~lp~~i~ 283 (784)
++|++|++++|..+. .+|..++.+..+..+++|++|++++|.+. .+|. .++++++|++|++++|.+. .+| .+.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999999999987355 58888887755566788999999999988 8998 9999999999999999999 999 999
Q ss_pred cccCCceeeccCccCCCCCccccccccc-cCeEeecCCCCCccCcccccCCC--CCCEEeccCcCCcc-cCcccc-----
Q 003945 284 HLFGLVQLTLNDCKNLSSLPVAISSFQC-LRNLKLSGCSKLKKFPQIVTTME--DLSELNLDGTSITE-VPSSIE----- 354 (784)
Q Consensus 284 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~-L~~L~L~~~~~~~~~~~~~~~l~--~L~~L~L~~~~i~~-lp~~l~----- 354 (784)
.+++|+.|++++|. +..+|..+..+++ |++|++++|... .+|..+..++ +|+.|++++|.+.. .|..+.
T Consensus 351 ~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 99999999999975 4488988999999 999999998866 7888777655 89999999999984 566676
Q ss_pred --CCCCCCEEecCCCCCccccccc-ccCCCCCCEEEccCCCCCCcCCCCCCC--------CCCccEEecCCCccccCCcc
Q 003945 355 --LLPGLELLNLNDCKNFARVPSS-INGLKSLKTLNLSGCCKLENVPDTLGQ--------VESLEELDISETAVRRPPSS 423 (784)
Q Consensus 355 --~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~Ls~c~~l~~~~~~l~~--------l~~L~~L~l~~~~i~~lp~~ 423 (784)
.+++|+.|++++|.+. .+|.. +..+++|++|++++|... .+|..... +++|+.|++++|.++.+|..
T Consensus 429 ~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 506 (636)
T 4eco_A 429 PFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506 (636)
T ss_dssp CCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred cccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence 7889999999999887 45554 556999999999998877 67665433 23999999999999999999
Q ss_pred cc--ccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecC------CCCCCCCCCCccc
Q 003945 424 VF--LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS------DCGLGEGAIPSDI 495 (784)
Q Consensus 424 ~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls------~~~l~~~~~p~~l 495 (784)
+. .+++|+.|++++|... + +|..+..+++|++|+++ +|.+. +.+|..+
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~----------------------~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~-~~~p~~l 562 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFS----------------------K-FPTQPLNSSTLKGFGIRNQRDAQGNRTL-REWPEGI 562 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCS----------------------S-CCCGGGGCSSCCEEECCSCBCTTCCBCC-CCCCTTG
T ss_pred hhhccCCCcCEEECCCCCCC----------------------C-cChhhhcCCCCCEEECCCCcccccCccc-ccChHHH
Confidence 87 9999999999998722 2 47778899999999995 56665 6789999
Q ss_pred CCCCCCCEEecCCCCCcccchhhhcCCCCCeecccccccc
Q 003945 496 GNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRL 535 (784)
Q Consensus 496 ~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L 535 (784)
+.+++|++|+|++|++..+|..+. ++|+.|+|++|+..
T Consensus 563 ~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp GGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTC
T ss_pred hcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCc
Confidence 999999999999999999998766 89999999999744
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4e-35 Score=340.54 Aligned_cols=406 Identities=17% Similarity=0.128 Sum_probs=316.3
Q ss_pred CCcceEEEcCccccCc----hhhcCcCccEEEEecCCCCCCCC-CC-CCCCeeEEEeCCCCcccc-cccccCCCCccEEE
Q 003945 120 TNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMK 192 (784)
Q Consensus 120 ~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~ 192 (784)
++|+.|++++|.+.+. +..+ ++|++|++++|.+..++. .+ ++++|++|++++|.++.+ |..++++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNF-SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCC-ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 6899999999887643 3333 489999999999988754 55 899999999999999887 77899999999999
Q ss_pred cCCCCCCCCC-CCCCCCCCccEEEecCCccCc-ccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCc----
Q 003945 193 LSHSENLIKT-PDFTEAPNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ---- 266 (784)
Q Consensus 193 L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~---- 266 (784)
+++|.+...+ ..++++++|++|++++|.... .+|..++. +++|++|++++|.+.+..+..++.+.+|+
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN------LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT------CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh------cCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 9999887665 468899999999999984332 34555444 45667788888887776666555554443
Q ss_pred EEEecCCCccccChhh----------------------------------------------------------------
Q 003945 267 ELLLDGTDIKELPLSI---------------------------------------------------------------- 282 (784)
Q Consensus 267 ~L~l~~~~i~~lp~~i---------------------------------------------------------------- 282 (784)
+|++++|.+..++...
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 4555555544443332
Q ss_pred -----------------hcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcC
Q 003945 283 -----------------EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 345 (784)
Q Consensus 283 -----------------~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 345 (784)
..+++|+.|++.++. +..+| .+..+++|++|++++|.. +.+|.. .+++|+.|++++|.
T Consensus 265 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~--~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNK 339 (606)
T ss_dssp EEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC-CCCTTCCCSEEEEESCCC-SSCCCC--CCSSCCEEEEESCS
T ss_pred heeccccccccccccccccCCCCCEEEecCcc-chhhh-hccccccCCEEEcccccC-cccccC--CCCccceeeccCCc
Confidence 334455555555533 34555 577788999999999887 778854 99999999999995
Q ss_pred CcccCccccCCCCCCEEecCCCCCccc--ccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCc-
Q 003945 346 ITEVPSSIELLPGLELLNLNDCKNFAR--VPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS- 422 (784)
Q Consensus 346 i~~lp~~l~~l~~L~~L~L~~~~~~~~--l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~- 422 (784)
...-. .+..+++|+.|++++|.+.+. .|..+..+++|++|++++|.. ..+|..+..+++|+.|++++|.+...++
T Consensus 340 ~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 340 GSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp SCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred Cccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccCh
Confidence 44322 567899999999999987765 377889999999999999874 4477889999999999999999997754
Q ss_pred -cccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCC
Q 003945 423 -SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL 501 (784)
Q Consensus 423 -~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L 501 (784)
.+..+++|+.|++++|.. ....|..+..+++|++|++++|.+.+..+|..++.+++|
T Consensus 418 ~~~~~l~~L~~L~l~~n~l----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNT----------------------KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475 (606)
T ss_dssp TTTTTCTTCCEEECTTSCC----------------------EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred hhhhccccCCEEECcCCCC----------------------CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence 788999999999999982 233366788999999999999999744578999999999
Q ss_pred CEEecCCCCCccc-chhhhcCCCCCeeccccccccCcCCC-C--CCCceEEEecCCccceeecCc
Q 003945 502 NELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQ-L--PPNIIFVKVNGCSSLVTLLGA 562 (784)
Q Consensus 502 ~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~i~~-l--p~sL~~L~~~~C~~L~~l~~~ 562 (784)
++|+|++|+++.+ |..+..+++|++|++++|+....+|. + .++|+.|++++|. ++.++..
T Consensus 476 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~ 539 (606)
T 3vq2_A 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGI 539 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESC
T ss_pred CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHh
Confidence 9999999999965 56789999999999999975554443 2 3689999999885 6666654
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.3e-36 Score=353.70 Aligned_cols=346 Identities=16% Similarity=0.189 Sum_probs=232.0
Q ss_pred CCcccccccccCCCCccEEEcCCCCCCC------------------CCCCCC--CCCCccEEEecCCccCcccCcccccc
Q 003945 173 SRIEELWKGIKHLNMLKVMKLSHSENLI------------------KTPDFT--EAPNLEELYLEGCTKLRKVHPSLLLH 232 (784)
Q Consensus 173 ~~i~~l~~~~~~l~~L~~L~L~~~~~~~------------------~~~~l~--~l~~L~~L~L~~~~~l~~~~~~i~~l 232 (784)
|.++.+|..++++++|++|+|++|.+.. .++.++ ++++|++|+|++|.....+|..++.
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~- 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD- 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-
Confidence 5555677777777777777777777665 444555 7777777777777656666654443
Q ss_pred CcccccCCccEEEecCCC-CCc-cccccccCCC-------cCcEEEecCCCccccCh--hhhcccCCceeeccCccCCCC
Q 003945 233 NKLIFVESLKILILSGCL-KLR-KFPHVVGSME-------CLQELLLDGTDIKELPL--SIEHLFGLVQLTLNDCKNLSS 301 (784)
Q Consensus 233 ~~L~~l~~L~~L~ls~~~-~~~-~~~~~l~~l~-------~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~ 301 (784)
+++|+.|++++|. +.+ .+|..++++. +|++|++++|.+..+|. .+..+++|+.|++++|... .
T Consensus 514 -----L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~ 587 (876)
T 4ecn_A 514 -----LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-H 587 (876)
T ss_dssp -----CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-B
T ss_pred -----CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-c
Confidence 3445557777776 555 5666555554 77777777777777777 7777777777777776533 6
Q ss_pred CccccccccccCeEeecCCCCCccCcccccCCCC-CCEEeccCcCCcccCccccCCCC--CCEEecCCCCCccccccc--
Q 003945 302 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED-LSELNLDGTSITEVPSSIELLPG--LELLNLNDCKNFARVPSS-- 376 (784)
Q Consensus 302 lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~-L~~L~L~~~~i~~lp~~l~~l~~--L~~L~L~~~~~~~~l~~~-- 376 (784)
+| .+..+++|+.|++++|... .+|..+..+++ |+.|++++|.+..+|..+..++. |+.|++++|.+.+.+|..
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence 66 5777777777777776655 66666777777 77777777777777766655543 777777777776654432
Q ss_pred -cc--CCCCCCEEEccCCCCCCcCCCCC-CCCCCccEEecCCCccccCCcccccc--------ccccEEecCCCCCCCCC
Q 003945 377 -IN--GLKSLKTLNLSGCCKLENVPDTL-GQVESLEELDISETAVRRPPSSVFLM--------KNLRTLSFSGCNGPPSS 444 (784)
Q Consensus 377 -~~--~l~~L~~L~Ls~c~~l~~~~~~l-~~l~~L~~L~l~~~~i~~lp~~~~~l--------~~L~~L~l~~~~~l~~~ 444 (784)
+. .+++|+.|++++|... .+|..+ ..+++|+.|++++|.+..+|..+... ++|+.|++++|...
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--- 741 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--- 741 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC---
T ss_pred hhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc---
Confidence 22 2347777777776655 455443 36677777777777777777655432 37777777777522
Q ss_pred CCcccccccccccCccchhhccCCCCC--CCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCC------CCCc-ccc
Q 003945 445 ASWHLHLPFNLMGKSSCLVALMLPSLS--GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSK------NNFV-TLP 515 (784)
Q Consensus 445 ~~~~~~~~l~~~~~~~~~~~~~~~~l~--~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~------n~l~-~lp 515 (784)
.+|..+. .+++|+.|+|++|.+.. +|..+..+++|+.|+|++ |++. .+|
T Consensus 742 --------------------~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 742 --------------------SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp --------------------CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred --------------------cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 1244444 67777777777777752 677777777777777765 4444 667
Q ss_pred hhhhcCCCCCeeccccccccCcCCC-CCCCceEEEecCCc
Q 003945 516 ASINSLLNLKELEMEDCKRLQFLPQ-LPPNIIFVKVNGCS 554 (784)
Q Consensus 516 ~~i~~l~~L~~L~L~~c~~L~~i~~-lp~sL~~L~~~~C~ 554 (784)
..+..+++|+.|+|++|+. ..+|. ++++|+.|++++|+
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred HHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence 7777777777777777764 66664 55677777777776
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-34 Score=335.28 Aligned_cols=404 Identities=19% Similarity=0.200 Sum_probs=262.7
Q ss_pred CcceEEEcCccccCc----hhhcCcCccEEEEecCCCCCC-CCCC-CCCCeeEEEeCCCCcccc-cccccCCCCccEEEc
Q 003945 121 NLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSL-PSNL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKL 193 (784)
Q Consensus 121 ~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L 193 (784)
+++.|++++|.+... +..+ ++|++|++++|.+..+ |..+ .+++|++|++++|.+..+ |..++.+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccC-ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 567777777766432 2223 3677777777776655 3445 677777777777777664 556777777777777
Q ss_pred CCCCCCCC-CCCCCCCCCccEEEecCCccCcccC-ccccccCcccccCCccEEEecCCCCCccccccccCCCcCc--EEE
Q 003945 194 SHSENLIK-TPDFTEAPNLEELYLEGCTKLRKVH-PSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ--ELL 269 (784)
Q Consensus 194 ~~~~~~~~-~~~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~--~L~ 269 (784)
++|.+... +..++++++|++|++++|. +..++ +.+ ..+++|++|++++|.+....+..++.+++|+ .|+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKG------FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTT------CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred cccCcccCCcchhccCCcccEEECCCCc-ccccCcccc------cCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 77766654 3456777777777777763 33221 111 1145666677777777766667777777777 677
Q ss_pred ecCCCccccChhhhcccCCceeeccCccCCCC-------------------------C-cccccccc--ccCeEeecCCC
Q 003945 270 LDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS-------------------------L-PVAISSFQ--CLRNLKLSGCS 321 (784)
Q Consensus 270 l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~-------------------------l-p~~l~~l~--~L~~L~L~~~~ 321 (784)
+++|.+..++.......+|+.|++.+|..... + +..+..+. +|+.|++++|.
T Consensus 186 l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred cCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 77777776665555555666666665531110 0 11111222 68888888887
Q ss_pred CCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCC-
Q 003945 322 KLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT- 400 (784)
Q Consensus 322 ~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~- 400 (784)
.....+..++.+++|++|++++|.++.+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|...+.+|..
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 7777777788999999999999999999998999999999999999888887888899999999999999887766654
Q ss_pred CCCCCCccEEecCCCccccC---CccccccccccEEecCCCCCCCCCC-CcccccccccccCcc-chhhccCC-CCCCCC
Q 003945 401 LGQVESLEELDISETAVRRP---PSSVFLMKNLRTLSFSGCNGPPSSA-SWHLHLPFNLMGKSS-CLVALMLP-SLSGLR 474 (784)
Q Consensus 401 l~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~l~~~~~~~-~~~~~~~~-~l~~l~ 474 (784)
++.+++|+.|++++|.+..+ +..+..+++|+.|++++|......+ .......+..+.... ...+..++ .+..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 88899999999999998865 5678889999999999887321110 111111222222221 11222222 255556
Q ss_pred CCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcc--c--chhhhcCCCCCeecccccc
Q 003945 475 SLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT--L--PASINSLLNLKELEMEDCK 533 (784)
Q Consensus 475 ~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~--l--p~~i~~l~~L~~L~L~~c~ 533 (784)
+|++|++++|.+. +..|..++.+++|++|++++|.+.. + +..+..+++|+.|++++|+
T Consensus 426 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 426 LLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TCCEEECTTCCCB-TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred cCCEEECCCCccC-CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 6666666666553 3445555556666666666665542 1 1345556666666666654
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.3e-35 Score=346.90 Aligned_cols=348 Identities=14% Similarity=0.141 Sum_probs=285.0
Q ss_pred CCCCC-CCCCeeEEEeCCCCccc------------------cccccc--CCCCccEEEcCCCCCCCCCC-CCCCCCCccE
Q 003945 156 LPSNL-QLDKIVEFKMCYSRIEE------------------LWKGIK--HLNMLKVMKLSHSENLIKTP-DFTEAPNLEE 213 (784)
Q Consensus 156 lp~~~-~l~~L~~L~L~~~~i~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~ 213 (784)
+|..+ ++++|++|+|++|.+.. +|..++ ++++|++|+|++|.....+| .+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 77777 88999999999999988 898887 99999999999998776655 5889999999
Q ss_pred EEecCCccCc--ccCccccccC-cccccCCccEEEecCCCCCccccc--cccCCCcCcEEEecCCCccccChhhhcccCC
Q 003945 214 LYLEGCTKLR--KVHPSLLLHN-KLIFVESLKILILSGCLKLRKFPH--VVGSMECLQELLLDGTDIKELPLSIEHLFGL 288 (784)
Q Consensus 214 L~L~~~~~l~--~~~~~i~~l~-~L~~l~~L~~L~ls~~~~~~~~~~--~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L 288 (784)
|++++|..+. .+|..++.+. .+..+++|+.|++++|.+. .+|. .++++++|+.|++++|.+..+| .+..+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence 9999986355 4787777765 6667788999999999888 8888 8999999999999999999888 88899999
Q ss_pred ceeeccCccCCCCCccccccccc-cCeEeecCCCCCccCcccccCCCC--CCEEeccCcCCcccC----cccc--CCCCC
Q 003945 289 VQLTLNDCKNLSSLPVAISSFQC-LRNLKLSGCSKLKKFPQIVTTMED--LSELNLDGTSITEVP----SSIE--LLPGL 359 (784)
Q Consensus 289 ~~L~L~~~~~~~~lp~~l~~l~~-L~~L~L~~~~~~~~~~~~~~~l~~--L~~L~L~~~~i~~lp----~~l~--~l~~L 359 (784)
+.|++++|... .+|..+..+++ |+.|++++|... .+|..+..++. |+.|++++|.+...+ ..+. .+++|
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 99999987644 88888888988 999999998765 77877776654 999999999887433 2233 34589
Q ss_pred CEEecCCCCCcccccccc-cCCCCCCEEEccCCCCCCcCCCCCCC--------CCCccEEecCCCccccCCcccc--ccc
Q 003945 360 ELLNLNDCKNFARVPSSI-NGLKSLKTLNLSGCCKLENVPDTLGQ--------VESLEELDISETAVRRPPSSVF--LMK 428 (784)
Q Consensus 360 ~~L~L~~~~~~~~l~~~~-~~l~~L~~L~Ls~c~~l~~~~~~l~~--------l~~L~~L~l~~~~i~~lp~~~~--~l~ 428 (784)
+.|++++|.+. .+|..+ ..+++|+.|++++|... .+|..+.. +++|+.|++++|.++.+|..+. .++
T Consensus 676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753 (876)
T ss_dssp EEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred CEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence 99999998877 556554 47899999999998665 66665433 2389999999999999998887 899
Q ss_pred cccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCC------CCCCCCCCCcccCCCCCCC
Q 003945 429 NLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSD------CGLGEGAIPSDIGNLHSLN 502 (784)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~------~~l~~~~~p~~l~~l~~L~ 502 (784)
+|+.|++++|... + +|..+..+++|+.|+|++ |.+. +.+|..+..+++|+
T Consensus 754 ~L~~L~Ls~N~L~----------------------~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~-~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 754 YLSNMDVSYNCFS----------------------S-FPTQPLNSSQLKAFGIRHQRDAEGNRIL-RQWPTGITTCPSLI 809 (876)
T ss_dssp TCCEEECCSSCCS----------------------S-CCCGGGGCTTCCEEECCCCBCTTCCBCC-CCCCTTGGGCSSCC
T ss_pred CcCEEEeCCCCCC----------------------c-cchhhhcCCCCCEEECCCCCCccccccc-ccChHHHhcCCCCC
Confidence 9999999988721 1 366778899999999976 5565 67888999999999
Q ss_pred EEecCCCCCcccchhhhcCCCCCeecccccccc
Q 003945 503 ELYLSKNNFVTLPASINSLLNLKELEMEDCKRL 535 (784)
Q Consensus 503 ~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L 535 (784)
.|+|++|++..+|..+. ++|+.|+|++|+..
T Consensus 810 ~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 810 QLQIGSNDIRKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp EEECCSSCCCBCCSCCC--SSSCEEECCSCTTC
T ss_pred EEECCCCCCCccCHhhc--CCCCEEECCCCCCC
Confidence 99999999999998765 69999999999744
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.3e-33 Score=327.18 Aligned_cols=437 Identities=19% Similarity=0.174 Sum_probs=255.6
Q ss_pred cccCHHHHhcCCCcceEEEcCccccCc----hhhcCcCccEEEEecCCCCCCCCC-C-CCCCeeEEEeCCCCccccc-cc
Q 003945 109 VHLSAKAFSLMTNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELW-KG 181 (784)
Q Consensus 109 ~~~~~~~f~~~~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~-~~ 181 (784)
..+...+|.++++|+.|+++++.+.+. +..+ ++|++|++++|.+..+|.. + .+++|++|++++|.+..++ ..
T Consensus 38 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 116 (680)
T 1ziw_A 38 RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116 (680)
T ss_dssp CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCT
T ss_pred CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhH
Confidence 456677899999999999998887643 3333 4899999999999998874 5 8999999999999998876 56
Q ss_pred ccCCCCccEEEcCCCCCCCCCC-CCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCcccc----
Q 003945 182 IKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP---- 256 (784)
Q Consensus 182 ~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~---- 256 (784)
+.++++|++|++++|.....++ .+.++++|++|++++|. +..+++..... ..+++|++|++++|.+.+..|
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~ 192 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDI---FANSSLKKLELSSNQIKEFSPGCFH 192 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGG---GTTCEESEEECTTCCCCCBCTTGGG
T ss_pred ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhc---cccccccEEECCCCcccccChhhhh
Confidence 8899999999999998776644 47788899999998873 33333221100 012345555555555444444
Q ss_pred -----------------------------------------------ccccCCCc--CcEEEecCCCccccC-hhhhccc
Q 003945 257 -----------------------------------------------HVVGSMEC--LQELLLDGTDIKELP-LSIEHLF 286 (784)
Q Consensus 257 -----------------------------------------------~~l~~l~~--L~~L~l~~~~i~~lp-~~i~~l~ 286 (784)
..+..++. |++|++++|.+..++ ..+..++
T Consensus 193 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (680)
T 1ziw_A 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272 (680)
T ss_dssp GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcc
Confidence 33433332 444444444444332 3344444
Q ss_pred CCceeeccCccCCCCCccccccccccCeEeecCCCCCc-----cCcc----cccCCCCCCEEeccCcCCcccC-ccccCC
Q 003945 287 GLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLK-----KFPQ----IVTTMEDLSELNLDGTSITEVP-SSIELL 356 (784)
Q Consensus 287 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-----~~~~----~~~~l~~L~~L~L~~~~i~~lp-~~l~~l 356 (784)
+|+.|++++|...+..|..+..+++|+.|+++++.... .+|. .+..+++|++|++++|.+..++ ..+..+
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 352 (680)
T 1ziw_A 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352 (680)
T ss_dssp TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC
T ss_pred cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccc
Confidence 55555554443333334444445555555554432111 1121 3444555555555555555433 234555
Q ss_pred CCCCEEecCCCCCccc-ccc-cccC--CCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc-cCC-ccccccccc
Q 003945 357 PGLELLNLNDCKNFAR-VPS-SING--LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPP-SSVFLMKNL 430 (784)
Q Consensus 357 ~~L~~L~L~~~~~~~~-l~~-~~~~--l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~-~lp-~~~~~l~~L 430 (784)
++|+.|++++|..... ++. .+.. .++|+.|++++|...+..|..+..+++|+.|++++|.+. .+| ..+..+++|
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L 432 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432 (680)
T ss_dssp TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTC
T ss_pred cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccc
Confidence 5555555555542211 111 1111 134555555555555555666777777777777777776 344 456667777
Q ss_pred cEEecCCCCCCCCC-CCcccccccccccCccc---hhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEec
Q 003945 431 RTLSFSGCNGPPSS-ASWHLHLPFNLMGKSSC---LVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYL 506 (784)
Q Consensus 431 ~~L~l~~~~~l~~~-~~~~~~~~l~~~~~~~~---~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L 506 (784)
++|++++|...... ..+.....+..+....+ ..+..|..+..+++|+.|++++|.+. +..+..+..+++|++|++
T Consensus 433 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L 511 (680)
T 1ziw_A 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDL 511 (680)
T ss_dssp CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeC
Confidence 77777777621110 01111111222221111 12345666777788888888888775 444455777788888888
Q ss_pred CCCCCcccch---------hhhcCCCCCeeccccccccCcCCC--C--CCCceEEEecC
Q 003945 507 SKNNFVTLPA---------SINSLLNLKELEMEDCKRLQFLPQ--L--PPNIIFVKVNG 552 (784)
Q Consensus 507 ~~n~l~~lp~---------~i~~l~~L~~L~L~~c~~L~~i~~--l--p~sL~~L~~~~ 552 (784)
++|+++.++. .+..+++|+.|++++|. ++.+|. + .++|+.|++++
T Consensus 512 s~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp CSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCcceeECCC
Confidence 8887775532 25677778888887774 445553 1 24666666644
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=330.07 Aligned_cols=411 Identities=22% Similarity=0.235 Sum_probs=297.0
Q ss_pred cccCHHHHhcCCCcceEEEcCccccCc----hhhcCcCccEEEEecCCCCCCC-CCC-CCCCeeEEEeCCCCcccccc-c
Q 003945 109 VHLSAKAFSLMTNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSLP-SNL-QLDKIVEFKMCYSRIEELWK-G 181 (784)
Q Consensus 109 ~~~~~~~f~~~~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~lp-~~~-~l~~L~~L~L~~~~i~~l~~-~ 181 (784)
..+...+|.++++|+.|++++|.+... +..+ ++||+|++++|.+..+| ..+ .+++|++|++++|.++.++. .
T Consensus 41 ~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 119 (570)
T 2z63_A 41 RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119 (570)
T ss_dssp CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCS
T ss_pred CccChhHhhCCCCceEEECCCCcCCccCcccccCc-hhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcc
Confidence 345667889999999999998876532 3333 48999999999988877 445 89999999999999988876 5
Q ss_pred ccCCCCccEEEcCCCCCCCC--CCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccc
Q 003945 182 IKHLNMLKVMKLSHSENLIK--TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV 259 (784)
Q Consensus 182 ~~~l~~L~~L~L~~~~~~~~--~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l 259 (784)
++++++|++|++++|.+... +..++++++|++|++++|......+..+..+.+|.. ..+.|++++|.+....|..+
T Consensus 120 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--~~~~L~l~~n~l~~~~~~~~ 197 (570)
T 2z63_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL--LNLSLDLSLNPMNFIQPGAF 197 (570)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT--CCCEEECTTCCCCEECTTTT
T ss_pred ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch--hhhhcccCCCCceecCHHHh
Confidence 88999999999999887652 446888999999999987433222333443333311 01467777776666555555
Q ss_pred cCCCcCcEEEecCCC----------------------------------------------------------c-cccCh
Q 003945 260 GSMECLQELLLDGTD----------------------------------------------------------I-KELPL 280 (784)
Q Consensus 260 ~~l~~L~~L~l~~~~----------------------------------------------------------i-~~lp~ 280 (784)
..+ +|+.|+++++. + ..+|.
T Consensus 198 ~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 198 KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp TTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred ccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence 544 56666665541 1 12445
Q ss_pred hhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCC
Q 003945 281 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLE 360 (784)
Q Consensus 281 ~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~ 360 (784)
.+..+++|+.|++.+|. +..+|..+..+ +|++|++++|... .+|. ..+++|+.|++.+|.+...... ..+++|+
T Consensus 277 ~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~ 350 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLE 350 (570)
T ss_dssp TTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCC
T ss_pred hhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCC
Confidence 67778889999998864 55788777777 8999999887655 5554 4678888999888887744333 6788899
Q ss_pred EEecCCCCCcccc--cccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCc--cccccccccEEecC
Q 003945 361 LLNLNDCKNFARV--PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS--SVFLMKNLRTLSFS 436 (784)
Q Consensus 361 ~L~L~~~~~~~~l--~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~ 436 (784)
.|++++|.+.... +..+.++++|++|++++|...+..+ .+..+++|+.|++++|.+...+. .+..+++|+.|+++
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 9999888876543 6677788889999998876654433 37788889999999888886643 67788889999998
Q ss_pred CCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCccc-c
Q 003945 437 GCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-P 515 (784)
Q Consensus 437 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p 515 (784)
+|.. ....+..+..+++|++|++++|.+.++.+|..++.+++|++|++++|+++.+ |
T Consensus 430 ~n~l----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 430 HTHT----------------------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp TSCC----------------------EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred CCcc----------------------cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 8862 2223556778888889999888886556888888888899999988888866 6
Q ss_pred hhhhcCCCCCeeccccccccCcCC-CC---CCCceEEEecCC
Q 003945 516 ASINSLLNLKELEMEDCKRLQFLP-QL---PPNIIFVKVNGC 553 (784)
Q Consensus 516 ~~i~~l~~L~~L~L~~c~~L~~i~-~l---p~sL~~L~~~~C 553 (784)
..+..+++|+.|++++|+ ++.++ .. .++|+.|++.++
T Consensus 488 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred hhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCC
Confidence 778888888999888885 44443 21 134455555443
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=329.34 Aligned_cols=426 Identities=19% Similarity=0.183 Sum_probs=234.7
Q ss_pred CCcceEEEcCccccC----chhhcCcCccEEEEecCCCCCCCCC-C-CCCCeeEEEeCCCCccccc-ccccCCCCccEEE
Q 003945 120 TNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMK 192 (784)
Q Consensus 120 ~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~ 192 (784)
++++.|++++|.+.. .+..+ ++|++|++++|.+..++.. + ++++|++|++++|.++.++ ..+..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTC-SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCC-CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 356666776666542 22222 3677777777666666533 3 6667777777777666654 4566677777777
Q ss_pred cCCCCCCCCCC-CCCCCCCccEEEecCCccCc-ccCccccccCcccccCCccEEEecCCCCCccccccccCCCcC----c
Q 003945 193 LSHSENLIKTP-DFTEAPNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL----Q 266 (784)
Q Consensus 193 L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L----~ 266 (784)
+++|.+....+ .++++++|++|++++|.... .+|..++. +++|++|++++|.+....+..++.+++| +
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG------CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcc------cCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 77666554433 36666777777776653222 23333332 3455557777766666666666666666 6
Q ss_pred EEEecCCCccccChhhhcccCCceeeccCccCCC-CCcccccccc--------------------------------ccC
Q 003945 267 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS-SLPVAISSFQ--------------------------------CLR 313 (784)
Q Consensus 267 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~lp~~l~~l~--------------------------------~L~ 313 (784)
.|++++|.+..++.......+|+.|++++|.... .++..+..++ .++
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 6677766666555443333356666555431100 0000000000 011
Q ss_pred eEeecCC-CCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCC
Q 003945 314 NLKLSGC-SKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 392 (784)
Q Consensus 314 ~L~L~~~-~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~ 392 (784)
.++++++ ......+..+..+++|+.|+++++.+..+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCB
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCc
Confidence 1222221 111223344444555555555555555555555555 5555555555443 3332 234455555555544
Q ss_pred CCCcCCCCCCCCCCccEEecCCCccccC---CccccccccccEEecCCCCCCCCCCCcccccccccccCccc-hhhccC-
Q 003945 393 KLENVPDTLGQVESLEELDISETAVRRP---PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSC-LVALML- 467 (784)
Q Consensus 393 ~l~~~~~~l~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~- 467 (784)
.....+. ..+++|+.|++++|.++.. |..+..+++|+.|++++|..............+..+....+ +....+
T Consensus 337 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 337 GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTS
T ss_pred ccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccch
Confidence 4333332 3444455555555444433 33344444455555544431111000111111111111111 122222
Q ss_pred CCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCc--ccchhhhcCCCCCeeccccccccCcCCCC---C
Q 003945 468 PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRLQFLPQL---P 542 (784)
Q Consensus 468 ~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~i~~l---p 542 (784)
..+..+++|++|++++|.+. +..|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+.-...|.. .
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhcCCCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 35788999999999999986 567888999999999999999997 68999999999999999999755444532 3
Q ss_pred CCceEEEecCCccceeec
Q 003945 543 PNIIFVKVNGCSSLVTLL 560 (784)
Q Consensus 543 ~sL~~L~~~~C~~L~~l~ 560 (784)
++|+.|++.+| .++.++
T Consensus 494 ~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 494 SSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp TTCCEEECCSS-CCSCCC
T ss_pred cCCCEEeCCCC-cCCCCC
Confidence 68999999887 344443
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3e-33 Score=329.30 Aligned_cols=447 Identities=18% Similarity=0.197 Sum_probs=294.9
Q ss_pred ccCHHHHhcCCCcceEEEcCccccCc----hhhcCcCccEEEEecCCCCCCCC-CC-CCCCeeEEEeCCCCcccc-cccc
Q 003945 110 HLSAKAFSLMTNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGI 182 (784)
Q Consensus 110 ~~~~~~f~~~~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~ 182 (784)
.+.+.+|.++++|+.|++++|.+... +..+ .+|++|++++|.+..+|. .+ ++++|++|++++|.+..+ |..+
T Consensus 63 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 141 (680)
T 1ziw_A 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141 (680)
T ss_dssp CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS
T ss_pred ccCHHHHhcccCcCEEECCCCccCccChhhhccC-CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh
Confidence 45567788888899998888876542 2233 488888888888888874 45 888888888888888765 4567
Q ss_pred cCCCCccEEEcCCCCCCCCCCC---CCCCCCccEEEecCCccCcccCccccccCcc------------------------
Q 003945 183 KHLNMLKVMKLSHSENLIKTPD---FTEAPNLEELYLEGCTKLRKVHPSLLLHNKL------------------------ 235 (784)
Q Consensus 183 ~~l~~L~~L~L~~~~~~~~~~~---l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L------------------------ 235 (784)
.++++|++|++++|.+....+. ...+++|++|++++|......+..+..+.+|
T Consensus 142 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~ 221 (680)
T 1ziw_A 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221 (680)
T ss_dssp SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTT
T ss_pred cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhh
Confidence 8888888888888876655442 3356788888888763222222222222211
Q ss_pred ---------------------ccc--CCccEEEecCCCCCccccccccCCCcCcEEEecCCCcccc-ChhhhcccCCcee
Q 003945 236 ---------------------IFV--ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQL 291 (784)
Q Consensus 236 ---------------------~~l--~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L 291 (784)
..+ ++|+.|++++|.+.+..|..++.+++|++|++++|.+..+ |..+..+++|+.|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 112 3499999999998888889999999999999999999865 5578899999999
Q ss_pred eccCccCCC-----CCcc----ccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCc--ccCcc-cc--CCC
Q 003945 292 TLNDCKNLS-----SLPV----AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT--EVPSS-IE--LLP 357 (784)
Q Consensus 292 ~L~~~~~~~-----~lp~----~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~lp~~-l~--~l~ 357 (784)
++++|.... .+|. .+..+++|++|++++|......+..+..+++|++|++++|.+. .++.. +. ..+
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 998754332 3343 4677888999999988877777777888888888888877532 33321 11 124
Q ss_pred CCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCC-CCCCCCCCccEEecCCCccccCC-ccccccccccEEec
Q 003945 358 GLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTLGQVESLEELDISETAVRRPP-SSVFLMKNLRTLSF 435 (784)
Q Consensus 358 ~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~-~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l 435 (784)
+|+.|++++|.+.+..|..+..+++|+.|++++|...+.+| ..+..+++|+.|++++|.+..++ ..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 66677777666666666666666667777776666655444 45566666666666666665432 34455666666666
Q ss_pred CCCCCCC--CC-CCcccccccccccCccc-hhhccCCCCCCCCCCCEEecCCCCCCC---CCCC----cccCCCCCCCEE
Q 003945 436 SGCNGPP--SS-ASWHLHLPFNLMGKSSC-LVALMLPSLSGLRSLTKLDLSDCGLGE---GAIP----SDIGNLHSLNEL 504 (784)
Q Consensus 436 ~~~~~l~--~~-~~~~~~~~l~~~~~~~~-~~~~~~~~l~~l~~L~~L~Ls~~~l~~---~~~p----~~l~~l~~L~~L 504 (784)
.+|.... .. ........+..+..+++ +....+..+..+++|++|++++|.+.. ..+| ..++++++|++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 6654210 00 11111222233332222 222223457778888888888887742 1111 236778888888
Q ss_pred ecCCCCCcccch-hhhcCCCCCeeccccccccCcCCCC----CCCceEEEecCCccceee
Q 003945 505 YLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQL----PPNIIFVKVNGCSSLVTL 559 (784)
Q Consensus 505 ~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~i~~l----p~sL~~L~~~~C~~L~~l 559 (784)
+|++|+++.+|. .+..+++|+.|++++|. ++.+|.- .++|+.|++.++ .++.+
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~ 599 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKN-LITSV 599 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS-CCCBC
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCC-cCCcc
Confidence 888888888776 46788888888888775 5555531 256777777766 34443
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=339.50 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=39.8
Q ss_pred CCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeeccccccccCcCCCCCCCceEE
Q 003945 469 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFV 548 (784)
Q Consensus 469 ~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~i~~lp~sL~~L 548 (784)
.+..+++|++|+|++|.++ +..|..+..+++|+.|+|++|+++.+|..... ++|+.|+|++|......|...++|+.+
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l 552 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVL 552 (844)
T ss_dssp CSSCBCCEECCCCCHHHHT-TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEE
T ss_pred hhcCcccccEEECCCCccc-ccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhCCcCEE
Confidence 3445555555555555553 33344455555555555555555544433222 455555555554444444333444444
Q ss_pred Eec
Q 003945 549 KVN 551 (784)
Q Consensus 549 ~~~ 551 (784)
++.
T Consensus 553 ~l~ 555 (844)
T 3j0a_A 553 DIT 555 (844)
T ss_dssp EEE
T ss_pred Eec
Confidence 444
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-33 Score=321.12 Aligned_cols=398 Identities=18% Similarity=0.199 Sum_probs=281.4
Q ss_pred CCcceEEEcCccccCc----hhhcCcCccEEEEecCCCCCCCC-CC-CCCCeeEEEeCCCCccccccc-ccCCCCccEEE
Q 003945 120 TNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMK 192 (784)
Q Consensus 120 ~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~ 192 (784)
++|+.|++++|.+.+. +..+ ++|++|++++|.+..++. .+ .+++|++|++++|.+..++.. ++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 6899999999887532 3333 589999999999988774 45 899999999999999987665 89999999999
Q ss_pred cCCCCCCCC--CCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEe
Q 003945 193 LSHSENLIK--TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLL 270 (784)
Q Consensus 193 L~~~~~~~~--~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l 270 (784)
+++|.+... ++.++++++|++|++++|..+..++.. .+..+++|++|++++|.+.+..|..++.+++|++|++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-----DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-----TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHh-----hhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 999987743 456889999999999998656666532 2333667888999999988888999999999999999
Q ss_pred cCCCccccChhh-hcccCCceeeccCccCCCCC--cc-----------------------------ccccccccCeEeec
Q 003945 271 DGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSL--PV-----------------------------AISSFQCLRNLKLS 318 (784)
Q Consensus 271 ~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~l--p~-----------------------------~l~~l~~L~~L~L~ 318 (784)
+.+.+..+|..+ ..+++|+.|++++|...+.. |. .+..+++|+.++++
T Consensus 180 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp ECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred ccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 888888777664 45788888888886543311 10 11223344444444
Q ss_pred CCCCCcc-----------------------------------CcccccCCCCCCEEeccCcCCcccCccc-cCCCCCCEE
Q 003945 319 GCSKLKK-----------------------------------FPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELL 362 (784)
Q Consensus 319 ~~~~~~~-----------------------------------~~~~~~~l~~L~~L~L~~~~i~~lp~~l-~~l~~L~~L 362 (784)
+|...+. ++......++|+.|++++|.+..+|..+ ..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 4321110 0011122356777777777777777665 467888888
Q ss_pred ecCCCCCccccc---ccccCCCCCCEEEccCCCCCCcCC--CCCCCCCCccEEecCCCccccCCccccccccccEEecCC
Q 003945 363 NLNDCKNFARVP---SSINGLKSLKTLNLSGCCKLENVP--DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSG 437 (784)
Q Consensus 363 ~L~~~~~~~~l~---~~~~~l~~L~~L~Ls~c~~l~~~~--~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~ 437 (784)
++++|.+.+..| ..++.+++|++|++++|...+..+ ..+..+++|+.|++++|.++.+|..+..+++|++|++++
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTT
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCC
Confidence 888888777654 236677888888888876644321 346677888888888888888888888888888888888
Q ss_pred CCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchh
Q 003945 438 CNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS 517 (784)
Q Consensus 438 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~ 517 (784)
|.... ++..+ .++|++|++++|+++. ++ ..+++|++|+|++|+++.+|.
T Consensus 420 N~l~~-----------------------l~~~~--~~~L~~L~Ls~N~l~~--~~---~~l~~L~~L~Ls~N~l~~ip~- 468 (549)
T 2z81_A 420 TGIRV-----------------------VKTCI--PQTLEVLDVSNNNLDS--FS---LFLPRLQELYISRNKLKTLPD- 468 (549)
T ss_dssp SCCSC-----------------------CCTTS--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCC-
T ss_pred CCccc-----------------------ccchh--cCCceEEECCCCChhh--hc---ccCChhcEEECCCCccCcCCC-
Confidence 76211 11111 2578999999998853 22 578899999999999999886
Q ss_pred hhcCCCCCeeccccccccCcCCC---CCCCceEEEecCCc
Q 003945 518 INSLLNLKELEMEDCKRLQFLPQ---LPPNIIFVKVNGCS 554 (784)
Q Consensus 518 i~~l~~L~~L~L~~c~~L~~i~~---lp~sL~~L~~~~C~ 554 (784)
...+++|+.|+|++|+.-...|. -.++|+.|++++++
T Consensus 469 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 56789999999999863332222 12345555555544
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=318.77 Aligned_cols=382 Identities=18% Similarity=0.150 Sum_probs=273.5
Q ss_pred CCcceEEEcCccccCch----hhcCcCccEEEEecCCCCCC-CCCC-CCCCeeEEEeCCCCcccccccccCCCCccEEEc
Q 003945 120 TNLGLLKINNVQLLEGL----EYLSNKLRLLDWHRYPLKSL-PSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKL 193 (784)
Q Consensus 120 ~~Lr~L~l~~~~l~~~~----~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L 193 (784)
++|+.|++++|.+.+.. ..+ ++|++|++++|.+..+ |..+ .+++|++|++++|.++.+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhcccc-ccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 67777777777765432 222 4777888877777766 4455 777788888888777777766 6777888888
Q ss_pred CCCCCCCC-C-CCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCC--CccccccccC--------
Q 003945 194 SHSENLIK-T-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLK--LRKFPHVVGS-------- 261 (784)
Q Consensus 194 ~~~~~~~~-~-~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~--~~~~~~~l~~-------- 261 (784)
++|.+... . ..++++++|++|++++|. +.. ..+..+.+| +|+.|++++|.+ .+..|..++.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L----~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHL----NISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTS----CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred cCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccc----eeeEEEeecccccccccccccccccccceEEE
Confidence 77776652 3 357777778888877763 222 122222221 337788888777 5555555444
Q ss_pred ------------------CCcCcEEEecCCC-------ccccChhhhcccCCceeeccCccCCCCCcccc---ccccccC
Q 003945 262 ------------------MECLQELLLDGTD-------IKELPLSIEHLFGLVQLTLNDCKNLSSLPVAI---SSFQCLR 313 (784)
Q Consensus 262 ------------------l~~L~~L~l~~~~-------i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l---~~l~~L~ 313 (784)
+++|+.|++++|. +......+..+++|+.|++.+|......+..+ ...++|+
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 4555555555554 22222255566666666666543322111111 1145899
Q ss_pred eEeecCCCCCccCcccc-----cCCCCCCEEeccCcCCcccC-ccccCC---CCCCEEecCCCCCcccccccccCCCCCC
Q 003945 314 NLKLSGCSKLKKFPQIV-----TTMEDLSELNLDGTSITEVP-SSIELL---PGLELLNLNDCKNFARVPSSINGLKSLK 384 (784)
Q Consensus 314 ~L~L~~~~~~~~~~~~~-----~~l~~L~~L~L~~~~i~~lp-~~l~~l---~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 384 (784)
+|++++|...+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ ++|+.|++++|.+.... ....+++|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~ 327 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL 327 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence 99999988777888887 8899999999999998 777 344443 67999999999865432 126789999
Q ss_pred EEEccCCCCCCcCCCCCCCCCCccEEecCCCcccc---CCccccccccccEEecCCCCCCCCCCCcccccccccccCccc
Q 003945 385 TLNLSGCCKLENVPDTLGQVESLEELDISETAVRR---PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSC 461 (784)
Q Consensus 385 ~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~ 461 (784)
+|++++|...+.+|..++.+++|+.|++++|.++. +|..+..+++|+.|++++|.....
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~------------------ 389 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD------------------ 389 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC------------------
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc------------------
Confidence 99999999998899999999999999999999985 446788999999999999883221
Q ss_pred hhhccCC-CCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeeccccccccCcCCC
Q 003945 462 LVALMLP-SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQ 540 (784)
Q Consensus 462 ~~~~~~~-~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~i~~ 540 (784)
+|. .+..+++|++|++++|.++ +..|..+. ++|+.|++++|+++.+|..+..+++|+.|++++|+ ++.+|.
T Consensus 390 ----l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~ 461 (520)
T 2z7x_B 390 ----EKKGDCSWTKSLLSLNMSSNILT-DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPD 461 (520)
T ss_dssp ----GGGCSCCCCTTCCEEECCSSCCC-GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCT
T ss_pred ----cccchhccCccCCEEECcCCCCC-cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCH
Confidence 132 3677899999999999996 45665554 79999999999999999999999999999999995 556654
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=329.35 Aligned_cols=421 Identities=19% Similarity=0.170 Sum_probs=239.7
Q ss_pred CCCcceEEEcCccccC----chhhcCcCccEEEEecCC-CCCC-CCCC-CCCCeeEEEeCCCCcccc-cccccCCCCccE
Q 003945 119 MTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYP-LKSL-PSNL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKV 190 (784)
Q Consensus 119 ~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~-l~~l-p~~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~ 190 (784)
.++|+.|++++|.+.. .+..+ .+|++|++++|. ...+ |..+ ++++|++|+|++|.+..+ |..+.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4566667776666542 22222 366777776663 3444 3444 666777777777666654 556666777777
Q ss_pred EEcCCCCCCCCCC-C--CCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCC--CcC
Q 003945 191 MKLSHSENLIKTP-D--FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSM--ECL 265 (784)
Q Consensus 191 L~L~~~~~~~~~~-~--l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l--~~L 265 (784)
|+|++|......+ . +.++++|++|++++|......+. ..+..+++|++|++++|.+.+..+..++.+ ++|
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~-----~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH-----PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC-----GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc-----hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 7777666554322 2 66666777777766532221111 112234555667777766666666666655 666
Q ss_pred cEEEecCCCcc-ccChhhhcccC------CceeeccCccCCCCCccccc-------------------------------
Q 003945 266 QELLLDGTDIK-ELPLSIEHLFG------LVQLTLNDCKNLSSLPVAIS------------------------------- 307 (784)
Q Consensus 266 ~~L~l~~~~i~-~lp~~i~~l~~------L~~L~L~~~~~~~~lp~~l~------------------------------- 307 (784)
+.|++++|.+. ..|..+..+.+ |+.|++++|......+..+.
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 77777666664 33444444333 67777766643322222111
Q ss_pred -----c--ccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCccc-CccccCCCCCCEEecCCCCCcccccccccC
Q 003945 308 -----S--FQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPSSING 379 (784)
Q Consensus 308 -----~--l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~l~~~~~~ 379 (784)
. .++|+.|++++|......+..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.+.+..|..+.+
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC
Confidence 1 14566666666665555566666666666666666666644 344666666677777666666555666666
Q ss_pred CCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCc
Q 003945 380 LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS 459 (784)
Q Consensus 380 l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~ 459 (784)
+++|+.|++++|......+..+..+++|+.|++++|.++.++. +++|+.|++++|....-... ...+..+..+
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls 409 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLS 409 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCccccccc---ccccceeecc
Confidence 6667777776665544445556666667777776666665543 55666666666553211100 0011111111
Q ss_pred c-------------------------chhhccC--CCCCCCCCCCEEecCCCCCCC----CCCCcccCCCCCCCEEecCC
Q 003945 460 S-------------------------CLVALML--PSLSGLRSLTKLDLSDCGLGE----GAIPSDIGNLHSLNELYLSK 508 (784)
Q Consensus 460 ~-------------------------~~~~~~~--~~l~~l~~L~~L~Ls~~~l~~----~~~p~~l~~l~~L~~L~L~~ 508 (784)
. +.....+ ..+..+++|+.|++++|.+.. +..+..+.++++|+.|+|++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 1 1000000 112334555555555555431 22334567778888888888
Q ss_pred CCCcccch-hhhcCCCCCeeccccccccCcCCC--CCCCceEEEecCC
Q 003945 509 NNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQ--LPPNIIFVKVNGC 553 (784)
Q Consensus 509 n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~i~~--lp~sL~~L~~~~C 553 (784)
|+++.+|. .+..+++|+.|+|++|+ ++.+|. ++++|+.|+++++
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~~L~~L~Ls~N 536 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHNDLPANLEILDISRN 536 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCC-CSSCCCCCCCSCCCEEEEEEE
T ss_pred CcccccChhHccchhhhheeECCCCC-CCccChhhhhccccEEECCCC
Confidence 88886655 46788888888888885 555553 5678888888765
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6e-33 Score=316.01 Aligned_cols=399 Identities=18% Similarity=0.149 Sum_probs=299.8
Q ss_pred ceEEEcCccccCchhhcCcCccEEEEecCCCCCCCC-CC-CCCCeeEEEeCCCCcccc-cccccCCCCccEEEcCCCCCC
Q 003945 123 GLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENL 199 (784)
Q Consensus 123 r~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~ 199 (784)
+.|+++++.+..-+..++++|++|++++|.+..++. .+ .+++|++|++++|.++.+ |..+.++++|++|+|++|.+.
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 578999998886666667899999999999998874 45 899999999999999987 678999999999999999877
Q ss_pred CCCCCCCCCCCccEEEecCCccCc-ccCccccccCcccccCCccEEEecCCCCCccccccccCCCcC--cEEEecCCCc-
Q 003945 200 IKTPDFTEAPNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL--QELLLDGTDI- 275 (784)
Q Consensus 200 ~~~~~l~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L--~~L~l~~~~i- 275 (784)
. +|.. .+++|++|++++|.... .+|..++. +++|++|++++|.+.+ ..++.+++| ++|++++|.+
T Consensus 83 ~-lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~------l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 83 K-ISCH-PTVNLKHLDLSFNAFDALPICKEFGN------MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp E-EECC-CCCCCSEEECCSSCCSSCCCCGGGGG------CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred e-cCcc-ccCCccEEeccCCccccccchhhhcc------CCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 4 4444 89999999999985333 24444443 5667789999998766 456677777 9999999987
Q ss_pred --cccChhhhc--------------------------ccCCceeeccCcc-------CCCCCccccccccccCeEeecCC
Q 003945 276 --KELPLSIEH--------------------------LFGLVQLTLNDCK-------NLSSLPVAISSFQCLRNLKLSGC 320 (784)
Q Consensus 276 --~~lp~~i~~--------------------------l~~L~~L~L~~~~-------~~~~lp~~l~~l~~L~~L~L~~~ 320 (784)
...|..+.. +++|+.|++++|. ..+.+| .+..+++|+.|++++|
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence 244555444 4555556655543 222233 3556667777777665
Q ss_pred CCCccCcccc---cCCCCCCEEeccCcCCc-ccCccc-----cCCCCCCEEecCCCCCccccc-ccccCC---CCCCEEE
Q 003945 321 SKLKKFPQIV---TTMEDLSELNLDGTSIT-EVPSSI-----ELLPGLELLNLNDCKNFARVP-SSINGL---KSLKTLN 387 (784)
Q Consensus 321 ~~~~~~~~~~---~~l~~L~~L~L~~~~i~-~lp~~l-----~~l~~L~~L~L~~~~~~~~l~-~~~~~l---~~L~~L~ 387 (784)
......+..+ ...++|++|++++|.+. .+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|+
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 4433211111 12458999999999998 888888 8999999999999887 555 344444 6799999
Q ss_pred ccCCCCCCcCCCCCCCCCCccEEecCCCcccc-CCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhcc
Q 003945 388 LSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALM 466 (784)
Q Consensus 388 Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 466 (784)
+++|...... ....+++|+.|++++|.++. +|..+..+++|+.|++++|.... ...+
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------------l~~~ 366 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE--------------------LSKI 366 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB--------------------HHHH
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc--------------------cccc
Confidence 9998765432 12678999999999999996 78889999999999999997321 0122
Q ss_pred CCCCCCCCCCCEEecCCCCCCCCCCCc-ccCCCCCCCEEecCCCCCc-ccchhhhcCCCCCeeccccccccCcCCC---C
Q 003945 467 LPSLSGLRSLTKLDLSDCGLGEGAIPS-DIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQ---L 541 (784)
Q Consensus 467 ~~~l~~l~~L~~L~Ls~~~l~~~~~p~-~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~i~~---l 541 (784)
|..+..+++|++|++++|.+. +.+|. .+..+++|++|++++|.++ .+|..+. ++|+.|++++|+ ++.+|. -
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~-~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~ 442 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVS-YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVK 442 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCB-CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGG
T ss_pred hHHHhhCCCCCEEECCCCcCC-cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhc
Confidence 445778999999999999996 44665 4888999999999999996 5565443 799999999995 556664 2
Q ss_pred CCCceEEEecCCccceeecCc
Q 003945 542 PPNIIFVKVNGCSSLVTLLGA 562 (784)
Q Consensus 542 p~sL~~L~~~~C~~L~~l~~~ 562 (784)
.++|+.|++++| .++.++..
T Consensus 443 l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 443 LEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp CTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCCEEECCCC-cCCccCHH
Confidence 368999999887 46666543
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.4e-32 Score=310.37 Aligned_cols=391 Identities=19% Similarity=0.210 Sum_probs=293.7
Q ss_pred ccCHHHHhcCCCcceEEEcCccccCc----hhhcCcCccEEEEecCCCCCCCCC-C-CCCCeeEEEeCCCCccc--cccc
Q 003945 110 HLSAKAFSLMTNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEE--LWKG 181 (784)
Q Consensus 110 ~~~~~~f~~~~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~--l~~~ 181 (784)
.+.+.+|.++++|++|++++|.+... +..+ .+|++|++++|.+..+|.. + .+++|++|++++|.++. .|..
T Consensus 40 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 118 (549)
T 2z81_A 40 YIGHGDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118 (549)
T ss_dssp EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS
T ss_pred ccChhhhhcCCcccEEECCCCCcCccChhhcccc-ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhh
Confidence 44567889999999999999987542 3333 4899999999999888865 5 89999999999999985 4678
Q ss_pred ccCCCCccEEEcCCCCCCCCCC--CCCCCCCccEEEecCCccCcccCccccccCcccc------------------cCCc
Q 003945 182 IKHLNMLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF------------------VESL 241 (784)
Q Consensus 182 ~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~------------------l~~L 241 (784)
++++++|++|++++|.....++ .+.++++|++|++++|......+..+..+.+|+. +++|
T Consensus 119 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 198 (549)
T 2z81_A 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198 (549)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTB
T ss_pred hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccc
Confidence 8999999999999998555533 6889999999999998655556666655554432 4566
Q ss_pred cEEEecCCCCCccc---cccccCCCcCcEEEecCCCcc-----ccChhhhcccCCceeeccCccCCCC------------
Q 003945 242 KILILSGCLKLRKF---PHVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNLSS------------ 301 (784)
Q Consensus 242 ~~L~ls~~~~~~~~---~~~l~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~------------ 301 (784)
++|++++|.+.+.. ......+++|+.|+++++.+. .++..+..+++|+.|++.+|...+.
T Consensus 199 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 278 (549)
T 2z81_A 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278 (549)
T ss_dssp SEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCC
T ss_pred cEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhh
Confidence 66676666655431 112234555666666555543 2223344555666666665532210
Q ss_pred -----------------------CccccccccccCeEeecCCCCCccCcccc-cCCCCCCEEeccCcCCcc-cC---ccc
Q 003945 302 -----------------------LPVAISSFQCLRNLKLSGCSKLKKFPQIV-TTMEDLSELNLDGTSITE-VP---SSI 353 (784)
Q Consensus 302 -----------------------lp~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~L~~~~i~~-lp---~~l 353 (784)
++......++|+.|++++|.. ..+|..+ ..+++|++|++++|.+.. +| ..+
T Consensus 279 ~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 357 (549)
T 2z81_A 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357 (549)
T ss_dssp CCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred hhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhh
Confidence 011112246789999998764 4667655 579999999999999984 33 347
Q ss_pred cCCCCCCEEecCCCCCccccc--ccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCcccccccccc
Q 003945 354 ELLPGLELLNLNDCKNFARVP--SSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLR 431 (784)
Q Consensus 354 ~~l~~L~~L~L~~~~~~~~l~--~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 431 (784)
+.+++|+.|++++|.+.+..+ ..+..+++|++|++++|... .+|..++.+++|+.|++++|.++.+|..+ .++|+
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~ 434 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLE 434 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCS
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh--cCCce
Confidence 889999999999998765432 45788999999999998655 78999999999999999999999888765 37999
Q ss_pred EEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCC
Q 003945 432 TLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNF 511 (784)
Q Consensus 432 ~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l 511 (784)
.|++++|.... ....+++|++|++++|++. .+|. ...+++|++|+|++|++
T Consensus 435 ~L~Ls~N~l~~--------------------------~~~~l~~L~~L~Ls~N~l~--~ip~-~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 435 VLDVSNNNLDS--------------------------FSLFLPRLQELYISRNKLK--TLPD-ASLFPVLLVMKISRNQL 485 (549)
T ss_dssp EEECCSSCCSC--------------------------CCCCCTTCCEEECCSSCCS--SCCC-GGGCTTCCEEECCSSCC
T ss_pred EEECCCCChhh--------------------------hcccCChhcEEECCCCccC--cCCC-cccCccCCEEecCCCcc
Confidence 99999997211 1247889999999999995 5776 46799999999999999
Q ss_pred cccch-hhhcCCCCCeeccccccc
Q 003945 512 VTLPA-SINSLLNLKELEMEDCKR 534 (784)
Q Consensus 512 ~~lp~-~i~~l~~L~~L~L~~c~~ 534 (784)
+.+|. .+..+++|+.|++++|+.
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CCcCHHHHhcCcccCEEEecCCCc
Confidence 97765 589999999999999983
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.8e-31 Score=304.94 Aligned_cols=202 Identities=16% Similarity=0.175 Sum_probs=151.9
Q ss_pred cccCeEeecCCCCCccCcccc-----cCCCCCCEEeccCcCCcccCc-ccc---CCCCCCEEecCCCCCcccccccccCC
Q 003945 310 QCLRNLKLSGCSKLKKFPQIV-----TTMEDLSELNLDGTSITEVPS-SIE---LLPGLELLNLNDCKNFARVPSSINGL 380 (784)
Q Consensus 310 ~~L~~L~L~~~~~~~~~~~~~-----~~l~~L~~L~L~~~~i~~lp~-~l~---~l~~L~~L~L~~~~~~~~l~~~~~~l 380 (784)
++|++|++++|...+.+|..+ ..++.|+.+++..+.+ .+|. .+. ...+|+.|++++|.+.... ....+
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l 352 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSP 352 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCC
Confidence 488899999887777777766 5666666666666665 4552 221 1257899999988764322 12578
Q ss_pred CCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCC---ccccccccccEEecCCCCCCCCCCCccccccccccc
Q 003945 381 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP---SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMG 457 (784)
Q Consensus 381 ~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~ 457 (784)
++|++|++++|...+.+|..++.+++|+.|++++|.++.++ ..+..+++|+.|++++|.....
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------- 418 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-------------- 418 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC--------------
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc--------------
Confidence 89999999999888888888899999999999999988665 4577889999999998873221
Q ss_pred CccchhhccC-CCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeeccccccccC
Q 003945 458 KSSCLVALML-PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQ 536 (784)
Q Consensus 458 ~~~~~~~~~~-~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~ 536 (784)
+| ..+..+++|++|++++|.++ +..|..+. ++|++|+|++|+++.+|..+..+++|+.|++++|+ ++
T Consensus 419 --------~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~ 486 (562)
T 3a79_B 419 --------AYDRTCAWAESILVLNLSSNMLT-GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LK 486 (562)
T ss_dssp --------CSSCCCCCCTTCCEEECCSSCCC-GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CC
T ss_pred --------cChhhhcCcccCCEEECCCCCCC-cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CC
Confidence 12 23667889999999999886 45555443 68999999999999999888899999999999986 45
Q ss_pred cCCC
Q 003945 537 FLPQ 540 (784)
Q Consensus 537 ~i~~ 540 (784)
.+|.
T Consensus 487 ~l~~ 490 (562)
T 3a79_B 487 SVPD 490 (562)
T ss_dssp CCCT
T ss_pred CCCH
Confidence 5553
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=9.2e-31 Score=293.26 Aligned_cols=341 Identities=21% Similarity=0.324 Sum_probs=227.3
Q ss_pred CccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCcc
Q 003945 142 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK 221 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 221 (784)
+|+.|++.++.+..+|....+++|++|++++|.++.++. +..+++|++|++++|.+....+ +.++++|++|++++| .
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~ 123 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-Q 123 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-C
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-C
Confidence 555555555555555542255666666666666665554 5666666666666665544433 566666666666655 2
Q ss_pred CcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCC
Q 003945 222 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS 301 (784)
Q Consensus 222 l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~ 301 (784)
+..+++ +..+++|++|++++|.+.. ++ .++.+++|++|+++ +.+..++. +..+++|+.|++++|. +..
T Consensus 124 l~~~~~-------~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~-l~~ 191 (466)
T 1o6v_A 124 ITDIDP-------LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNK-VSD 191 (466)
T ss_dssp CCCCGG-------GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSC-CCC
T ss_pred CCCChH-------HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCc-CCC
Confidence 333322 2334555556666655443 22 35666666666664 33444332 6666677777776654 344
Q ss_pred CccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCC
Q 003945 302 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLK 381 (784)
Q Consensus 302 lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~ 381 (784)
++. +..+++|++|++++|......+ ++.+++|++|++++|.++.++ .+..+++|+.|++++|.+.+..+ +..++
T Consensus 192 ~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 192 ISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp CGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred Chh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 443 5667777777777766554433 556777888888887777664 46677888888888887665544 67788
Q ss_pred CCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccc
Q 003945 382 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSC 461 (784)
Q Consensus 382 ~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~ 461 (784)
+|+.|++++|...+..+ +..+++|+.|++++|.+..++. +..+++|+.|++++|.....
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~------------------ 324 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI------------------ 324 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC------------------
T ss_pred CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc------------------
Confidence 88888888876655433 6778888888888888887766 77888899999988862211
Q ss_pred hhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeeccccccc
Q 003945 462 LVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 534 (784)
Q Consensus 462 ~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 534 (784)
++ +..+++|++|++++|.+.+ + ..+..+++|+.|++++|+++.++. +..+++|+.|++++|+.
T Consensus 325 -----~~-~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 325 -----SP-VSSLTKLQRLFFYNNKVSD--V-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp -----GG-GGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred -----hh-hccCccCCEeECCCCccCC--c-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence 11 5678899999999998863 3 468889999999999999987765 88899999999999873
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=2.9e-31 Score=296.82 Aligned_cols=345 Identities=18% Similarity=0.195 Sum_probs=188.7
Q ss_pred cCcCccEEEEecCCCCCC-CCCC-CCCCeeEEEeCCCCcc-cc-cccccCCCCccEEEcCCCCCCCCC-CCCCCCCCccE
Q 003945 139 LSNKLRLLDWHRYPLKSL-PSNL-QLDKIVEFKMCYSRIE-EL-WKGIKHLNMLKVMKLSHSENLIKT-PDFTEAPNLEE 213 (784)
Q Consensus 139 l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~~~i~-~l-~~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~ 213 (784)
++++|++|++++|.+..+ |..+ .+++|++|++++|.+. .+ +..+..+++|++|+|++|.+.... ..+.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 334455555555554444 2233 4455555555555443 22 233444555555555554444332 23444455555
Q ss_pred EEecCCccCcccCccccccCcccccCCccEEEecCCCCCcccccc--ccCCCcCcEEEecCCCcccc-Chh-hhcccCCc
Q 003945 214 LYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV--VGSMECLQELLLDGTDIKEL-PLS-IEHLFGLV 289 (784)
Q Consensus 214 L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~--l~~l~~L~~L~l~~~~i~~l-p~~-i~~l~~L~ 289 (784)
|++++ |.+.+..+.. ++.+++|++|++++|.+..+ |.. +..+++|+
T Consensus 108 L~L~~------------------------------n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 108 LTLTQ------------------------------CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp EECTT------------------------------SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred EeCCC------------------------------CCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 55544 4444333222 44444444444444444433 222 44444455
Q ss_pred eeeccCccCCCCCccccccc--cccCeEeecCCCCCccCccc--------ccCCCCCCEEeccCcCCc-ccCcccc---C
Q 003945 290 QLTLNDCKNLSSLPVAISSF--QCLRNLKLSGCSKLKKFPQI--------VTTMEDLSELNLDGTSIT-EVPSSIE---L 355 (784)
Q Consensus 290 ~L~L~~~~~~~~lp~~l~~l--~~L~~L~L~~~~~~~~~~~~--------~~~l~~L~~L~L~~~~i~-~lp~~l~---~ 355 (784)
.|++++|......|..+..+ .+|+.|++++|......+.. +..+++|++|++++|.+. ..|..+. .
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 55544443333333333333 34445555444333222211 113344555555555544 2222221 1
Q ss_pred CCCCCEEecCCCCCcccc----------ccccc--CCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccC-Cc
Q 003945 356 LPGLELLNLNDCKNFARV----------PSSIN--GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP-PS 422 (784)
Q Consensus 356 l~~L~~L~L~~~~~~~~l----------~~~~~--~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~l-p~ 422 (784)
.++|+.|++++|...+.. +..+. ..++|+.|++++|...+..|..++.+++|+.|++++|.+..+ |.
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 245555555554332211 11111 235788888888777777777777888888888888887765 44
Q ss_pred cccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCC
Q 003945 423 SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLN 502 (784)
Q Consensus 423 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~ 502 (784)
.+..+++|+.|++++|.. ....+..+..+++|++|++++|.+. +..|..+..+++|+
T Consensus 318 ~~~~l~~L~~L~Ls~N~l----------------------~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFL----------------------GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTTCTTCCEEECCSSCC----------------------CEECGGGGTTCTTCCEEECCSSCCC-EECTTTTTTCTTCC
T ss_pred HhcCcccCCEEECCCCcc----------------------CCcChhHhcCcccCCEEECCCCccc-ccChhhcccccccc
Confidence 677778888888887762 1122445677888888888888885 45577788888888
Q ss_pred EEecCCCCCcccchh-hhcCCCCCeeccccccccC
Q 003945 503 ELYLSKNNFVTLPAS-INSLLNLKELEMEDCKRLQ 536 (784)
Q Consensus 503 ~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~ 536 (784)
+|+|++|+++.+|.. +..+++|+.|++++|+.-.
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 888888888877764 4788888888888887433
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=1.1e-30 Score=299.87 Aligned_cols=372 Identities=17% Similarity=0.162 Sum_probs=217.5
Q ss_pred CcceEEEcCccccCchhhcCcCccEEEEecCCCCCCCC-CC-CCCCeeEEEeCCCCcccc-cccccCCCCccEEEcCCCC
Q 003945 121 NLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSE 197 (784)
Q Consensus 121 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~ 197 (784)
..+.++++++.+..-+..++++|++|++++|.+..++. .+ .+++|++|++++|.++.+ |..+..+++|++|+|++|.
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 45889999999887666677899999999999998884 55 899999999999999987 6679999999999999998
Q ss_pred CCCCCCCCCCCCCccEEEecCCccCcccC--ccccccCcccccCCccEEEecCCCCCccccccccCCCcC--cEEEecCC
Q 003945 198 NLIKTPDFTEAPNLEELYLEGCTKLRKVH--PSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL--QELLLDGT 273 (784)
Q Consensus 198 ~~~~~~~l~~l~~L~~L~L~~~~~l~~~~--~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L--~~L~l~~~ 273 (784)
+...++. .+++|++|++++|. +..++ ..++ .+++|++|++++|.+... .+..+++| ++|++++|
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~------~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFG------NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGG------GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred CCccCcc--ccccCCEEECCCCC-ccccCchHhhc------ccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 7644444 89999999999984 44433 3333 356778899999987764 34444555 99999998
Q ss_pred Cc--c-ccChhhhccc----------------------------------------------------------------
Q 003945 274 DI--K-ELPLSIEHLF---------------------------------------------------------------- 286 (784)
Q Consensus 274 ~i--~-~lp~~i~~l~---------------------------------------------------------------- 286 (784)
.+ . ..|..+..+.
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 87 3 2333333322
Q ss_pred -----------------CCceeeccCccCCCCCcccc-----ccccccCeEeecCCCCCccCc-ccccC---CCCCCEEe
Q 003945 287 -----------------GLVQLTLNDCKNLSSLPVAI-----SSFQCLRNLKLSGCSKLKKFP-QIVTT---MEDLSELN 340 (784)
Q Consensus 287 -----------------~L~~L~L~~~~~~~~lp~~l-----~~l~~L~~L~L~~~~~~~~~~-~~~~~---l~~L~~L~ 340 (784)
+|+.|++++|...+.+|..+ ..++.|+.+++..+.. .+| ..+.. ..+|+.|+
T Consensus 260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence 33344444433333444433 3334444444443332 222 11111 13455555
Q ss_pred ccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCC--cCCCCCCCCCCccEEecCCCccc
Q 003945 341 LDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE--NVPDTLGQVESLEELDISETAVR 418 (784)
Q Consensus 341 L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~--~~~~~l~~l~~L~~L~l~~~~i~ 418 (784)
+++|.+...+. ...+++|+.|++++|.+.+..|..+..+++|+.|++++|...+ .+|..++.+++|+.|++++|.++
T Consensus 338 l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 338 ISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp EESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred ccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 55555443321 1344555555555555555555555555555555555554433 22334455555555555555555
Q ss_pred c-CCcc-ccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccC
Q 003945 419 R-PPSS-VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 496 (784)
Q Consensus 419 ~-lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~ 496 (784)
. +|.. +..+++|+.|++++|... +..+..+. ++|++|++++|.+. .+|..+.
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~----------------------~~~~~~l~--~~L~~L~L~~N~l~--~ip~~~~ 470 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLT----------------------GSVFRCLP--PKVKVLDLHNNRIM--SIPKDVT 470 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCC----------------------GGGGSSCC--TTCSEEECCSSCCC--CCCTTTT
T ss_pred CccChhhhcCcccCCEEECCCCCCC----------------------cchhhhhc--CcCCEEECCCCcCc--ccChhhc
Confidence 4 4432 344555555555555411 11111111 35555555555553 3555444
Q ss_pred CCCCCCEEecCCCCCcccchh-hhcCCCCCeecccccc
Q 003945 497 NLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 533 (784)
Q Consensus 497 ~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 533 (784)
.+++|++|+|++|+++.+|.. +..+++|+.|++++|+
T Consensus 471 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 471 HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 555555555555555555554 4555555555555553
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=2.2e-30 Score=290.11 Aligned_cols=349 Identities=19% Similarity=0.293 Sum_probs=288.4
Q ss_pred hcCCCcceEEEcCccccC--chhhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcC
Q 003945 117 SLMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLS 194 (784)
Q Consensus 117 ~~~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~ 194 (784)
..+++|+.|++.++.+.. ++..+ ++|++|++++|.+..+|....+++|++|++++|.+..++. +.++++|++|+++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred hHhccccEEecCCCCCccCcchhhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 345688999998887653 33443 5999999999999999883399999999999999999877 9999999999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCC
Q 003945 195 HSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTD 274 (784)
Q Consensus 195 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~ 274 (784)
+|.+.... .+..+++|++|++++|. +..++ .+..+++|+.|++++ .... ++ .++++++|++|+++++.
T Consensus 121 ~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~-------~~~~l~~L~~L~l~~-~~~~-~~-~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 121 NNQITDID-PLKNLTNLNRLELSSNT-ISDIS-------ALSGLTSLQQLSFGN-QVTD-LK-PLANLTTLERLDISSNK 188 (466)
T ss_dssp SSCCCCCG-GGTTCTTCSEEEEEEEE-ECCCG-------GGTTCTTCSEEEEEE-SCCC-CG-GGTTCTTCCEEECCSSC
T ss_pred CCCCCCCh-HHcCCCCCCEEECCCCc-cCCCh-------hhccCCcccEeecCC-cccC-ch-hhccCCCCCEEECcCCc
Confidence 99766554 49999999999999973 44333 244577888899974 3332 23 38999999999999999
Q ss_pred ccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCcccc
Q 003945 275 IKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIE 354 (784)
Q Consensus 275 i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~ 354 (784)
+..++ .+..+++|+.|++++|... .++. ++.+++|+.|++++|.... + ..+..+++|+.|++++|.+..++. +.
T Consensus 189 l~~~~-~l~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-~~ 262 (466)
T 1o6v_A 189 VSDIS-VLAKLTNLESLIATNNQIS-DITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP-LS 262 (466)
T ss_dssp CCCCG-GGGGCTTCSEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred CCCCh-hhccCCCCCEEEecCCccc-cccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh-hh
Confidence 99886 4889999999999997544 4443 7779999999999987554 3 357789999999999999998776 88
Q ss_pred CCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEe
Q 003945 355 LLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLS 434 (784)
Q Consensus 355 ~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 434 (784)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|...+..+ ++.+++|+.|++++|.++.+++ +..+++|+.|+
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 337 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLF 337 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeE
Confidence 99999999999998776544 7889999999999987765433 7889999999999999998876 78999999999
Q ss_pred cCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCccc
Q 003945 435 FSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL 514 (784)
Q Consensus 435 l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l 514 (784)
+++|.... .+.+..+++|+.|++++|++. +..| +..+++|+.|++++|.++.+
T Consensus 338 l~~n~l~~------------------------~~~l~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 338 FYNNKVSD------------------------VSSLANLTNINWLSAGHNQIS-DLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCC------------------------CGGGTTCTTCCEEECCSSCCC-BCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCC------------------------chhhccCCCCCEEeCCCCccC-ccch--hhcCCCCCEEeccCCcccCC
Confidence 99997221 234778999999999999996 4444 89999999999999999988
Q ss_pred chh
Q 003945 515 PAS 517 (784)
Q Consensus 515 p~~ 517 (784)
|..
T Consensus 391 p~~ 393 (466)
T 1o6v_A 391 PVN 393 (466)
T ss_dssp CBC
T ss_pred chh
Confidence 754
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3.4e-30 Score=288.15 Aligned_cols=351 Identities=17% Similarity=0.144 Sum_probs=260.5
Q ss_pred CCcceEEEcCccccCc----hhhcCcCccEEEEecCCCC-CCC-CCC-CCCCeeEEEeCCCCcccc-cccccCCCCccEE
Q 003945 120 TNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLK-SLP-SNL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVM 191 (784)
Q Consensus 120 ~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~-~lp-~~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L 191 (784)
++|+.|+++++.+.+. +..+ ++|++|++++|.+. .++ ..+ .+++|++|++++|.+..+ |..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 7899999999987643 3333 58999999999885 565 445 899999999999999986 7889999999999
Q ss_pred EcCCCCCCCC-CCC--CCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCC--CcCc
Q 003945 192 KLSHSENLIK-TPD--FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSM--ECLQ 266 (784)
Q Consensus 192 ~L~~~~~~~~-~~~--l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l--~~L~ 266 (784)
++++|.+... ++. +..+++|++|++++|......|..+ +..+++|++|++++|.+.+..+..+..+ .+|+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF-----FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG-----GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc-----cCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 9999987654 223 8899999999999985333223321 3346778889999999888888888776 7888
Q ss_pred EEEecCCCccccChh---------hhcccCCceeeccCccCCCCCccccccc---cccCeEeecCCCCCccCcccccCCC
Q 003945 267 ELLLDGTDIKELPLS---------IEHLFGLVQLTLNDCKNLSSLPVAISSF---QCLRNLKLSGCSKLKKFPQIVTTME 334 (784)
Q Consensus 267 ~L~l~~~~i~~lp~~---------i~~l~~L~~L~L~~~~~~~~lp~~l~~l---~~L~~L~L~~~~~~~~~~~~~~~l~ 334 (784)
.|+++++.+..++.. +..+++|+.|++++|......|..+... ++|+.|++++|........
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------ 257 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------ 257 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------
Confidence 999998888766533 2344567777777665554444443332 5666666666543322110
Q ss_pred CCCEEeccCcCCcccC-ccc--cCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEe
Q 003945 335 DLSELNLDGTSITEVP-SSI--ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELD 411 (784)
Q Consensus 335 ~L~~L~L~~~~i~~lp-~~l--~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~ 411 (784)
.+.+.... ..+ ...++|+.|++++|.+.+..|..+..+++|++|++++|...+..|..++.+++|+.|+
T Consensus 258 --------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 258 --------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp --------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred --------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 00111000 011 1246788888888888888888888888999999988888877788888889999999
Q ss_pred cCCCccccC-CccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCC
Q 003945 412 ISETAVRRP-PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGA 490 (784)
Q Consensus 412 l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ 490 (784)
+++|.++.+ |..+..+++|+.|++++|.. ....+..+..+++|++|++++|++. +.
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l----------------------~~~~~~~~~~l~~L~~L~L~~N~l~-~~ 386 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHI----------------------RALGDQSFLGLPNLKELALDTNQLK-SV 386 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCC----------------------CEECTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcc----------------------cccChhhccccccccEEECCCCccc-cC
Confidence 999988876 45677889999999998872 2233667889999999999999996 34
Q ss_pred CCcccCCCCCCCEEecCCCCCcc
Q 003945 491 IPSDIGNLHSLNELYLSKNNFVT 513 (784)
Q Consensus 491 ~p~~l~~l~~L~~L~L~~n~l~~ 513 (784)
.+..+..+++|++|+|++|+++.
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHhHhccCCcccEEEccCCCccc
Confidence 44567899999999999999883
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=7.3e-30 Score=283.55 Aligned_cols=369 Identities=20% Similarity=0.203 Sum_probs=230.0
Q ss_pred HHHHhcCCCcceEEEcCccccCch----hhcC------------cCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcc
Q 003945 113 AKAFSLMTNLGLLKINNVQLLEGL----EYLS------------NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIE 176 (784)
Q Consensus 113 ~~~f~~~~~Lr~L~l~~~~l~~~~----~~l~------------~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~ 176 (784)
+.++.++++|+.|+++++.+.+.+ ..+. .++++|+++++.+..+|.. +++|++|++++|.++
T Consensus 27 P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLT 104 (454)
T ss_dssp -------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCS
T ss_pred ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCcCC
Confidence 456778888888888777654221 1111 2468888888888887763 468888888888888
Q ss_pred cccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCcccc
Q 003945 177 ELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP 256 (784)
Q Consensus 177 ~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~ 256 (784)
.+|.. +++|++|++++|.+.. ++.+ .++|++|++++| .+..+| . +..+++|++|++++|.+.+ +|
T Consensus 105 ~lp~~---~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n-~l~~lp-~------~~~l~~L~~L~l~~N~l~~-lp 169 (454)
T 1jl5_A 105 ELPEL---PQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNN-QLEKLP-E------LQNSSFLKIIDVDNNSLKK-LP 169 (454)
T ss_dssp SCCCC---CTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSS-CCSSCC-C------CTTCTTCCEEECCSSCCSC-CC
T ss_pred ccccc---cCCCcEEECCCCccCc-ccCC--CCCCCEEECcCC-CCCCCc-c------cCCCCCCCEEECCCCcCcc-cC
Confidence 87754 3788888888876543 2222 167888888887 344454 2 3345667778888887654 55
Q ss_pred ccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCC
Q 003945 257 HVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDL 336 (784)
Q Consensus 257 ~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 336 (784)
..+ .+|++|++++|.++.+| .+..+++|+.|++++|. +..+|.. .++|++|++++|... .+|. ++.+++|
T Consensus 170 ~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L 239 (454)
T 1jl5_A 170 DLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAGNNILE-ELPE-LQNLPFL 239 (454)
T ss_dssp CCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred CCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC---cCcccEEECcCCcCC-cccc-cCCCCCC
Confidence 433 47888888888888877 57888888888888864 4445542 357888888887654 5664 7788888
Q ss_pred CEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCc
Q 003945 337 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 416 (784)
Q Consensus 337 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~ 416 (784)
++|++++|.++.+|.. +++|+.|++++|.+.+ +|.. +++|+.|++++|...+ +|.. .++|+.|++++|.
T Consensus 240 ~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 240 TTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNE 308 (454)
T ss_dssp CEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSC
T ss_pred CEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCc
Confidence 8888888888877753 4788888888887654 4442 4788888888876544 2221 2578888888888
Q ss_pred cccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccC
Q 003945 417 VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 496 (784)
Q Consensus 417 i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~ 496 (784)
++.++.. .++|+.|++++|.... +|. .+++|++|++++|.+. .+|.
T Consensus 309 l~~i~~~---~~~L~~L~Ls~N~l~~-----------------------lp~---~~~~L~~L~L~~N~l~--~lp~--- 354 (454)
T 1jl5_A 309 IRSLCDL---PPSLEELNVSNNKLIE-----------------------LPA---LPPRLERLIASFNHLA--EVPE--- 354 (454)
T ss_dssp CSEECCC---CTTCCEEECCSSCCSC-----------------------CCC---CCTTCCEEECCSSCCS--CCCC---
T ss_pred CCcccCC---cCcCCEEECCCCcccc-----------------------ccc---cCCcCCEEECCCCccc--cccc---
Confidence 8765531 2578888888876211 122 2478899999999885 4666
Q ss_pred CCCCCCEEecCCCCCcc---cchhhhcC-------------CCCCeeccccccccCcCCCCCCCceEEEecCCc
Q 003945 497 NLHSLNELYLSKNNFVT---LPASINSL-------------LNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCS 554 (784)
Q Consensus 497 ~l~~L~~L~L~~n~l~~---lp~~i~~l-------------~~L~~L~L~~c~~L~~i~~lp~sL~~L~~~~C~ 554 (784)
.+++|++|++++|+++. +|.++..+ ++|+.|++++|+ ++.+|.+|++++.|.+.+|.
T Consensus 355 ~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 355 LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPESVEDLRMNSER 427 (454)
T ss_dssp CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------------
T ss_pred hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCccccchhhHhheeCcCcc
Confidence 47889999999988875 56677766 789999999886 56667888888888877664
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=3.9e-29 Score=277.68 Aligned_cols=354 Identities=21% Similarity=0.221 Sum_probs=179.5
Q ss_pred CCcceEEEcCccccC---chhhcCcCccEEEEecCCCC-CCCCCC-CCCCe-------------eEEEeCCCCccccccc
Q 003945 120 TNLGLLKINNVQLLE---GLEYLSNKLRLLDWHRYPLK-SLPSNL-QLDKI-------------VEFKMCYSRIEELWKG 181 (784)
Q Consensus 120 ~~Lr~L~l~~~~l~~---~~~~l~~~Lr~L~l~~~~l~-~lp~~~-~l~~L-------------~~L~L~~~~i~~l~~~ 181 (784)
++||.|+++++.+.. .+..+ ++|++|++++|.+. .+|..+ .+.+| ++|+++++.++.+|..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENV-KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCchhhCChhHhcc-cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 455555555555421 11111 35555555555542 455444 44433 5555555555555442
Q ss_pred ccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccC
Q 003945 182 IKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGS 261 (784)
Q Consensus 182 ~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~ 261 (784)
.++|++|++++|.+.. +|. ..++|++|++++| .+..++. . .++|++|++++|.+.+ +| .+++
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~--~~~~L~~L~l~~n-~l~~l~~----~-----~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPE--LPQSLKSLLVDNN-NLKALSD----L-----PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCC--CCTTCCEEECCSS-CCSCCCS----C-----CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred ---cCCCCEEEccCCcCCc-ccc--ccCCCcEEECCCC-ccCcccC----C-----CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 2455555555554443 222 1245555555554 2222221 0 1345556666555543 44 3555
Q ss_pred CCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEec
Q 003945 262 MECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 341 (784)
Q Consensus 262 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 341 (784)
+++|++|++++|.++.+|..+ .+|+.|++++|. +..+| .+..+++|++|++++|...+ +|.. .++|++|++
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 666666666666555555432 355566665542 33344 25555666666665554332 2222 135556666
Q ss_pred cCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCC
Q 003945 342 DGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP 421 (784)
Q Consensus 342 ~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp 421 (784)
++|.+..+|. ++.+++|+.|++++|.+.+ +|. .+++|+.|++++|...+ +|.. +++|+.|++++|.++.+|
T Consensus 223 ~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 223 GNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp CSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES
T ss_pred cCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc
Confidence 6665555553 5555566666666555433 232 12555666665554332 3332 245566666666555443
Q ss_pred ccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCC-CCCCEEecCCCCCCCCCCCcccCCCCC
Q 003945 422 SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGL-RSLTKLDLSDCGLGEGAIPSDIGNLHS 500 (784)
Q Consensus 422 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~Ls~~~l~~~~~p~~l~~l~~ 500 (784)
.. .++|+.|++++|.. ..+..+ ++|++|++++|.+.. +|.. +++
T Consensus 294 ~~---~~~L~~L~l~~N~l---------------------------~~i~~~~~~L~~L~Ls~N~l~~--lp~~---~~~ 338 (454)
T 1jl5_A 294 EL---PPNLYYLNASSNEI---------------------------RSLCDLPPSLEELNVSNNKLIE--LPAL---PPR 338 (454)
T ss_dssp CC---CTTCCEEECCSSCC---------------------------SEECCCCTTCCEEECCSSCCSC--CCCC---CTT
T ss_pred Cc---CCcCCEEECcCCcC---------------------------CcccCCcCcCCEEECCCCcccc--cccc---CCc
Confidence 21 24555666655541 111223 478888888888752 5553 577
Q ss_pred CCEEecCCCCCcccchhhhcCCCCCeeccccccccCcCCCCCCCceEEE
Q 003945 501 LNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVK 549 (784)
Q Consensus 501 L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~i~~lp~sL~~L~ 549 (784)
|++|++++|.++.+|. .+++|++|++++|+ +..+|.+|.++..|.
T Consensus 339 L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~ 383 (454)
T 1jl5_A 339 LERLIASFNHLAEVPE---LPQNLKQLHVEYNP-LREFPDIPESVEDLR 383 (454)
T ss_dssp CCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTTCCEEE
T ss_pred CCEEECCCCccccccc---hhhhccEEECCCCC-CCcCCCChHHHHhhh
Confidence 8888888888888776 46788888888874 566667777776654
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=2.5e-28 Score=285.03 Aligned_cols=401 Identities=19% Similarity=0.188 Sum_probs=254.2
Q ss_pred CcceEEEcCccccC----chhhcCcCccEEEEecCCCCCCCCC-C-CCCCeeEEEeCCCCccccccc-ccCCCCccEEEc
Q 003945 121 NLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKL 193 (784)
Q Consensus 121 ~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L 193 (784)
+++.|++++|.+.. .+..++ +||+|++++|.+..+|.. | ++++|++|+|++|+++.+|.+ +.++++|++|+|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 56666666666542 233333 666666666666666543 3 566666666666666666543 566666666666
Q ss_pred CCCCCCCCCC-CCCCCCCccEEEecCCccCcc--cCccccccCcccccCCccEEEecCCCCCccccccccCCCcCc----
Q 003945 194 SHSENLIKTP-DFTEAPNLEELYLEGCTKLRK--VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ---- 266 (784)
Q Consensus 194 ~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~--~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~---- 266 (784)
++|.+...++ .++++++|++|++++|. +.. +|..+ ..+++|++|++++|.+.+..+..+..+.+++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~------~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYF------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGG------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhh------ccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 6666554443 35666666666666653 221 12222 2244555566666665554444443332221
Q ss_pred EEEecCCCccccChhhh-------------------------cccCCcee------------------------------
Q 003945 267 ELLLDGTDIKELPLSIE-------------------------HLFGLVQL------------------------------ 291 (784)
Q Consensus 267 ~L~l~~~~i~~lp~~i~-------------------------~l~~L~~L------------------------------ 291 (784)
.++++.+.+..++.... .+..++..
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 23333333322221111 11111111
Q ss_pred ---------------------------eccCccCCCCCccccccccccCeEeecCCCCCccC------------------
Q 003945 292 ---------------------------TLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKF------------------ 326 (784)
Q Consensus 292 ---------------------------~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~------------------ 326 (784)
.+.++.. ..++ .+.....|+.|++.+|......
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI-ERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE-EECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred hhhhhhhcccccchhhhhhhhccccccccccccc-cccc-ccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence 1111000 0000 1222345666666655322111
Q ss_pred -cccccCCCCCCEEeccCcCCcc---cCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCC-CCC
Q 003945 327 -PQIVTTMEDLSELNLDGTSITE---VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP-DTL 401 (784)
Q Consensus 327 -~~~~~~l~~L~~L~L~~~~i~~---lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~-~~l 401 (784)
+.....+++|+.+++++|.+.. .+.....+.+|+.+++..+.... .+..+..+++|+.+++.++......+ ..+
T Consensus 363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred CCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccc
Confidence 1122357899999999998873 44556788999999999887544 45567889999999999887766544 457
Q ss_pred CCCCCccEEecCCCccccC-CccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEe
Q 003945 402 GQVESLEELDISETAVRRP-PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLD 480 (784)
Q Consensus 402 ~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~ 480 (784)
..+++++.++++.|.+..+ +..+..+++|+.|++++|... ....|..+..+++|++|+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~---------------------~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---------------------ENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG---------------------GGEECSCCTTCTTCCEEE
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccc---------------------cccCchhhhhccccCEEE
Confidence 8899999999999999865 456677999999999998621 223467788999999999
Q ss_pred cCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccch-hhhcCCCCCeeccccccccCcCCC----CCCCceEEEecCCc
Q 003945 481 LSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQ----LPPNIIFVKVNGCS 554 (784)
Q Consensus 481 Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~i~~----lp~sL~~L~~~~C~ 554 (784)
|++|++. +..|..++++++|++|+|++|+++.++. .+..+++|+.|+|++|+.-...|+ +|++|+.|++++.+
T Consensus 501 Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 501 LSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTSCCC-EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCccC-CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 9999996 5678889999999999999999998764 688999999999999975544443 45677777776543
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.6e-28 Score=264.15 Aligned_cols=300 Identities=20% Similarity=0.278 Sum_probs=182.7
Q ss_pred CccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCcc
Q 003945 142 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK 221 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 221 (784)
+|+.|+++++.+..+|....+++|++|++++|.++.++. +..+++|++|++++|.+.. ++.+..+++|++|++++|
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~l~~n-- 120 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-ISALQNLTNLRELYLNED-- 120 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECTTS--
T ss_pred cccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-chHHcCCCcCCEEECcCC--
Confidence 666666666666666542255556666666555555544 5555555555555553322 233444444444444443
Q ss_pred CcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCC
Q 003945 222 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS 301 (784)
Q Consensus 222 l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~ 301 (784)
.+..++. +..+++|+.|++++|.....
T Consensus 121 ----------------------------------------------------~i~~~~~-~~~l~~L~~L~l~~n~~~~~ 147 (347)
T 4fmz_A 121 ----------------------------------------------------NISDISP-LANLTKMYSLNLGANHNLSD 147 (347)
T ss_dssp ----------------------------------------------------CCCCCGG-GTTCTTCCEEECTTCTTCCC
T ss_pred ----------------------------------------------------cccCchh-hccCCceeEEECCCCCCccc
Confidence 3333322 33444444444444444444
Q ss_pred CccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCC
Q 003945 302 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLK 381 (784)
Q Consensus 302 lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~ 381 (784)
++. +..+++|++|++++|......+ +..+++|++|++++|.+..++. +..+++|+.|++++|.+....+ +..++
T Consensus 148 ~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~ 221 (347)
T 4fmz_A 148 LSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMT 221 (347)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred ccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCC
Confidence 333 4455555556555554333222 4556666666666666665554 5666667777776666554433 55667
Q ss_pred CCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccc
Q 003945 382 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSC 461 (784)
Q Consensus 382 ~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~ 461 (784)
+|++|++++|......+ +..+++|+.|++++|.++.+ +.+..+++|+.|++++|....
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~------------------- 279 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD------------------- 279 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC-------------------
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC-------------------
Confidence 77777777765544322 66677777777777777766 356677788888887775211
Q ss_pred hhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeecccccc
Q 003945 462 LVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 462 ~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 533 (784)
.+.+..+++|++|++++|.+. +..|..++.+++|++|++++|+++.++. +..+++|+.|++++|+
T Consensus 280 -----~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 280 -----ISVLNNLSQLNSLFLNNNQLG-NEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp -----CGGGGGCTTCSEEECCSSCCC-GGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred -----ChhhcCCCCCCEEECcCCcCC-CcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 123567788888888888885 4566778888999999999999887776 8888999999998886
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=4.6e-29 Score=277.37 Aligned_cols=346 Identities=16% Similarity=0.132 Sum_probs=246.2
Q ss_pred HHHHhcCCCcceEEEcCccccCc--hhhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccE
Q 003945 113 AKAFSLMTNLGLLKINNVQLLEG--LEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKV 190 (784)
Q Consensus 113 ~~~f~~~~~Lr~L~l~~~~l~~~--~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~ 190 (784)
...+.++++|+.|+++++.+.+. +..+ ++|++|++++|.+..+| ...+++|++|++++|.++.++ ++.+++|++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMTGIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCTTGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred ccChhHcCCCCEEEccCCCcccChhhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 44678899999999999988753 3333 59999999999999987 228999999999999999885 889999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEe
Q 003945 191 MKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLL 270 (784)
Q Consensus 191 L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l 270 (784)
|++++|.+... + ++.+++|++|++++| .+..++ +..+++|++|++++|...+.+ .++.+++|++|++
T Consensus 111 L~L~~N~l~~l-~-~~~l~~L~~L~l~~N-~l~~l~--------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 111 LNCDTNKLTKL-D-VSQNPLLTYLNCARN-TLTEID--------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp EECCSSCCSCC-C-CTTCTTCCEEECTTS-CCSCCC--------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred EECCCCcCCee-c-CCCCCcCCEEECCCC-ccceec--------cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 99999977653 3 899999999999997 344432 344677888999999777666 4788999999999
Q ss_pred cCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccC
Q 003945 271 DGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 350 (784)
Q Consensus 271 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp 350 (784)
++|.++.+| +..+++|+.|++++|. +..++ +..+++|++|++++|...+ +| ++.+++|+.|++++|.++.+|
T Consensus 178 s~n~l~~l~--l~~l~~L~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 178 SFNKITELD--VSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CSSCCCCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CCCccceec--cccCCCCCEEECcCCc-CCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 999999988 8889999999999865 44443 7789999999999987665 55 778899999999999998876
Q ss_pred ccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc-cCCcc------
Q 003945 351 SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSS------ 423 (784)
Q Consensus 351 ~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~------ 423 (784)
+..+++|+.|+++++ +|+.|++++|...+.+| .+.+++|+.|++++|... .+|..
T Consensus 250 --~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~ 311 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITE 311 (457)
T ss_dssp --CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred --HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceE
Confidence 445666666655442 23344444444444443 233444444444444322 12210
Q ss_pred --ccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCC
Q 003945 424 --VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL 501 (784)
Q Consensus 424 --~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L 501 (784)
+..+++|+.|++++|.. .+ . .++.+++|+.|++++|++.+ +++|
T Consensus 312 L~l~~~~~L~~L~L~~N~l----------------------~~--l-~l~~l~~L~~L~l~~N~l~~---------l~~L 357 (457)
T 3bz5_A 312 LDLSQNPKLVYLYLNNTEL----------------------TE--L-DVSHNTKLKSLSCVNAHIQD---------FSSV 357 (457)
T ss_dssp CCCTTCTTCCEEECTTCCC----------------------SC--C-CCTTCTTCSEEECCSSCCCB---------CTTG
T ss_pred echhhcccCCEEECCCCcc----------------------cc--c-ccccCCcCcEEECCCCCCCC---------cccc
Confidence 12224555566555541 11 1 15566667777777766642 2455
Q ss_pred CEEecCCCCCcccchhhhcCCCCCeeccccccccCcCC
Q 003945 502 NELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 539 (784)
Q Consensus 502 ~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~i~ 539 (784)
..|++++|.+... ..+..|+.+++++|..-..+|
T Consensus 358 ~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 358 GKIPALNNNFEAE----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp GGSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECC
T ss_pred ccccccCCcEEec----ceeeecCccccccCcEEEEcC
Confidence 5566666666543 355678899999997665655
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=5.6e-28 Score=259.92 Aligned_cols=305 Identities=16% Similarity=0.251 Sum_probs=261.0
Q ss_pred HHHhcCCCcceEEEcCccccC--chhhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEE
Q 003945 114 KAFSLMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVM 191 (784)
Q Consensus 114 ~~f~~~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L 191 (784)
..+..+++|+.|+++++.+.. ++..+ ++|++|++++|.+..+|....+++|++|++++|.++.++ .+..+++|++|
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQGIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCTTGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred ccchhcccccEEEEeCCccccchhhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 446688999999999988754 34444 599999999999999988339999999999999999886 68999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEec
Q 003945 192 KLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLD 271 (784)
Q Consensus 192 ~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~ 271 (784)
++++|.+.... .+..+++|++|++++|..+..++. +..+++|++|++++|......+ ++.+++|++|+++
T Consensus 116 ~l~~n~i~~~~-~~~~l~~L~~L~l~~n~~~~~~~~-------~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 116 YLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSP-------LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp ECTTSCCCCCG-GGTTCTTCCEEECTTCTTCCCCGG-------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred ECcCCcccCch-hhccCCceeEEECCCCCCcccccc-------hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 99999876554 499999999999999876655432 4457788999999998766544 8899999999999
Q ss_pred CCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCc
Q 003945 272 GTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS 351 (784)
Q Consensus 272 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~ 351 (784)
+|.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|......+ +..+++|++|++++|.++.++
T Consensus 186 ~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~- 259 (347)
T 4fmz_A 186 YNQIEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN- 259 (347)
T ss_dssp TSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-
T ss_pred CCccccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-
Confidence 999998887 8899999999999964 444554 7889999999999987655443 889999999999999999874
Q ss_pred cccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCcccccccccc
Q 003945 352 SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLR 431 (784)
Q Consensus 352 ~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 431 (784)
.+..+++|+.|++++|.+... ..+..+++|+.|++++|...+..+..++.+++|+.|++++|.++.+++ +..+++|+
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 336 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMD 336 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCS
T ss_pred hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccc
Confidence 588999999999999987664 457889999999999999888888888999999999999999998877 88999999
Q ss_pred EEecCCCC
Q 003945 432 TLSFSGCN 439 (784)
Q Consensus 432 ~L~l~~~~ 439 (784)
.|++++|.
T Consensus 337 ~L~l~~N~ 344 (347)
T 4fmz_A 337 SADFANQV 344 (347)
T ss_dssp EESSSCC-
T ss_pred eeehhhhc
Confidence 99999987
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=269.37 Aligned_cols=311 Identities=18% Similarity=0.199 Sum_probs=271.2
Q ss_pred ceEEEcCccccCchhhcCcCccEEEEecCCCCCCCC-CC-CCCCeeEEEeCCCCcccc-cccccCCCCccEEEcCCCCCC
Q 003945 123 GLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENL 199 (784)
Q Consensus 123 r~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~ 199 (784)
+.++.++..+..-+..++.++++|++++|.+..++. .+ .+++|++|+|++|.+..+ |..+.++++|++|+|++|.+.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 456777777766666778899999999999998864 55 899999999999999987 778999999999999999877
Q ss_pred CCCCC-CCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCcccc
Q 003945 200 IKTPD-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL 278 (784)
Q Consensus 200 ~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~l 278 (784)
..++. +.++++|++|++++|......+.. +..+++|++|++++|.+....+..+..+++|++|++++|.++.+
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYM------FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTT------TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhH------ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 66654 789999999999998533332322 33467788899999999988899999999999999999999988
Q ss_pred Ch-hhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCc-cccCC
Q 003945 279 PL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELL 356 (784)
Q Consensus 279 p~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~l~~l 356 (784)
|. .+..+++|+.|++++|......+..+..+++|+.|++++|.....++.......+|+.|++++|.++.+|. .+..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 86 48899999999999987665556678889999999999999888888777777799999999999999884 58999
Q ss_pred CCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCcc-ccccccccEEec
Q 003945 357 PGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS-VFLMKNLRTLSF 435 (784)
Q Consensus 357 ~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l 435 (784)
++|+.|++++|.+....+..+..+++|+.|++++|...+..|..+..+++|+.|++++|.++.++.. +..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 9999999999998887778899999999999999998888899999999999999999999998875 577999999999
Q ss_pred CCCC
Q 003945 436 SGCN 439 (784)
Q Consensus 436 ~~~~ 439 (784)
++|+
T Consensus 328 ~~N~ 331 (477)
T 2id5_A 328 DSNP 331 (477)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9987
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=5.5e-27 Score=273.56 Aligned_cols=398 Identities=20% Similarity=0.215 Sum_probs=291.5
Q ss_pred ceEEEcCccccCchhhcCcCccEEEEecCCCCCCCC-CC-CCCCeeEEEeCCCCcccccc-cccCCCCccEEEcCCCCCC
Q 003945 123 GLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENL 199 (784)
Q Consensus 123 r~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~ 199 (784)
++.+.++..+..-+..+|.++++|++++|.++.+|. .| ++++|++|+|++|.|+.++. .|.++++|++|+|++|++.
T Consensus 34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp TEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 455666666777777788999999999999999985 46 99999999999999999876 5899999999999999877
Q ss_pred CCCC-CCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCc-cccccccCCCcCcEEEecCCCccc
Q 003945 200 IKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLR-KFPHVVGSMECLQELLLDGTDIKE 277 (784)
Q Consensus 200 ~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~ 277 (784)
..++ .|.++++|++|++++| .+..+++.. +..+++|++|++++|.+.. ..|..++.+++|++|++++|.++.
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~-----~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVET-NLASLENFP-----IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTS-CCCCSTTCC-----CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCHHHhcCCCCCCEEECCCC-cCCCCChhh-----hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 6665 4899999999999998 566665431 2336778889999998865 578899999999999999999987
Q ss_pred cC-hhhhcccCCc----eeeccCccCCCCCccc-------------------------cccccccCeEe-----------
Q 003945 278 LP-LSIEHLFGLV----QLTLNDCKNLSSLPVA-------------------------ISSFQCLRNLK----------- 316 (784)
Q Consensus 278 lp-~~i~~l~~L~----~L~L~~~~~~~~lp~~-------------------------l~~l~~L~~L~----------- 316 (784)
++ ..+..+.+++ .++++.+. +..++.. +..+..++...
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~-l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred cccccccchhhhhhhhhhhhcccCc-ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 64 4455555443 34444322 1111111 11112222111
Q ss_pred ----------------------------------------------ecCCCCCccCcccccCCCCCCEEeccCcCCcccC
Q 003945 317 ----------------------------------------------LSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 350 (784)
Q Consensus 317 ----------------------------------------------L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp 350 (784)
+.++.... ...+....+|+.|++.++.+..++
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCC
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcC
Confidence 11111000 011233456677777666544322
Q ss_pred c--------------------cccCCCCCCEEecCCCCCcc--cccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCcc
Q 003945 351 S--------------------SIELLPGLELLNLNDCKNFA--RVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLE 408 (784)
Q Consensus 351 ~--------------------~l~~l~~L~~L~L~~~~~~~--~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~ 408 (784)
. ....+++|+.|++++|.... ..+.....+.+|+.+++..+.... .+..+..+++|+
T Consensus 345 ~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~ 423 (635)
T 4g8a_A 345 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLE 423 (635)
T ss_dssp CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCC
T ss_pred cccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccccccc
Confidence 1 12357889999999987753 345566788999999999876543 455677899999
Q ss_pred EEecCCCccccCC--ccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCC
Q 003945 409 ELDISETAVRRPP--SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGL 486 (784)
Q Consensus 409 ~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l 486 (784)
.+++..+.....+ ..+..+++++.++++.|.. ....+..+..+++|+.|++++|..
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l----------------------~~~~~~~~~~~~~L~~L~Ls~N~~ 481 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT----------------------RVAFNGIFNGLSSLEVLKMAGNSF 481 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC----------------------EECCTTTTTTCTTCCEEECTTCEE
T ss_pred chhhhhcccccccccccccccccccccccccccc----------------------ccccccccccchhhhhhhhhhccc
Confidence 9999998876543 3567799999999998872 222355677889999999999987
Q ss_pred CCCCCCcccCCCCCCCEEecCCCCCccc-chhhhcCCCCCeeccccccccCcCCCC----CCCceEEEecCC
Q 003945 487 GEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQL----PPNIIFVKVNGC 553 (784)
Q Consensus 487 ~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~i~~l----p~sL~~L~~~~C 553 (784)
.....|..+..+++|++|+|++|+++.+ |..+..+++|+.|+|++|+ ++.++.. .++|+.|+++++
T Consensus 482 ~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTS
T ss_pred ccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCC
Confidence 6566888999999999999999999976 5678999999999999995 6656532 268999998875
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=267.63 Aligned_cols=313 Identities=22% Similarity=0.242 Sum_probs=228.3
Q ss_pred eEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCC-CCCCCCCccEEEecCCccCcccCccccccCcccccCCccEE
Q 003945 166 VEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKIL 244 (784)
Q Consensus 166 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L 244 (784)
+.++.++..++.+|.++. ++|+.|+|++|.+....+ .+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n------------------------- 66 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN------------------------- 66 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-------------------------
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-------------------------
Confidence 467777777777777653 577778887776655433 4666666666666665
Q ss_pred EecCCCCCccccccccCCCcCcEEEecCCCccccChh-hhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCC
Q 003945 245 ILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKL 323 (784)
Q Consensus 245 ~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 323 (784)
.+....|..++++++|++|++++|.++.+|.. +..+++|+.|++++|......|..+..+++|++|++++|...
T Consensus 67 -----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 141 (477)
T 2id5_A 67 -----IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141 (477)
T ss_dssp -----CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC
T ss_pred -----ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc
Confidence 33333344555556666666666666655543 456666666666665544444555666777777777777666
Q ss_pred ccCcccccCCCCCCEEeccCcCCcccCc-cccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCC
Q 003945 324 KKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLG 402 (784)
Q Consensus 324 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~ 402 (784)
...+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+....+..+..+++|+.|++++|...+.+|....
T Consensus 142 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 221 (477)
T 2id5_A 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221 (477)
T ss_dssp EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT
T ss_pred eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc
Confidence 6666677777788888888887777664 367788888888888877776666788888888888888888888877776
Q ss_pred CCCCccEEecCCCccccCCc-cccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEec
Q 003945 403 QVESLEELDISETAVRRPPS-SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 481 (784)
Q Consensus 403 ~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L 481 (784)
...+|+.|++++|.++.+|. .+..+++|+.|++++|... ...+..+..+++|++|+|
T Consensus 222 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----------------------~~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS----------------------TIEGSMLHELLRLQEIQL 279 (477)
T ss_dssp TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC----------------------EECTTSCTTCTTCCEEEC
T ss_pred cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC----------------------ccChhhccccccCCEEEC
Confidence 77788999999888888874 5677889999999888621 122445778899999999
Q ss_pred CCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchh-hhcCCCCCeecccccc
Q 003945 482 SDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 533 (784)
Q Consensus 482 s~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 533 (784)
++|.+. +..|..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 280 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 280 VGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 999986 56678889999999999999999988764 5788999999999887
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=3.4e-27 Score=262.33 Aligned_cols=323 Identities=16% Similarity=0.099 Sum_probs=213.3
Q ss_pred cCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCc
Q 003945 141 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 220 (784)
Q Consensus 141 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 220 (784)
++|++|+++++.+..+|....+++|++|++++|.++.+| ++.+++|++|++++|.+... + ++.+++|++|++++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N- 116 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTN- 116 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSS-
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCC-
Confidence 488888888888888874338888888888888888875 77888888888888876553 3 778888888888886
Q ss_pred cCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCC-CccccChhhhcccCCceeeccCccCC
Q 003945 221 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGT-DIKELPLSIEHLFGLVQLTLNDCKNL 299 (784)
Q Consensus 221 ~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~L~~~~~~ 299 (784)
.+..++ +..+++|++|++++|.+.+. .++.+++|++|++++| .+..+ .+..+++|+.|++++| .+
T Consensus 117 ~l~~l~--------~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l 182 (457)
T 3bz5_A 117 KLTKLD--------VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KI 182 (457)
T ss_dssp CCSCCC--------CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CC
T ss_pred cCCeec--------CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-cc
Confidence 344332 33355666677777766552 2666677777777766 34444 3556666666666664 33
Q ss_pred CCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccC
Q 003945 300 SSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSING 379 (784)
Q Consensus 300 ~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~ 379 (784)
+.+| +..+++|+.|++++|..... .++.+++|+.|++++|.++.+| +..+++|+.|++++|.+.+.. ++.
T Consensus 183 ~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp CCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred ceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence 4444 55566666666666554432 2555666666666666666655 556666666666666555432 344
Q ss_pred CCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc-cCCccccccccccEEecCCCCCCCCCCCcccccccccccC
Q 003945 380 LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 458 (784)
Q Consensus 380 l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~ 458 (784)
+++|+.|+++++ +|+.|++++|.+. .+| ...+++|+.|++++|......+...
T Consensus 253 l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---------- 306 (457)
T 3bz5_A 253 LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---------- 306 (457)
T ss_dssp CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT----------
T ss_pred CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC----------
Confidence 566666665542 4566677776643 333 4678999999999998544322100
Q ss_pred ccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeecccccc
Q 003945 459 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 459 ~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 533 (784)
..+. .-.++.+++|++|++++|+++. ++ ++.+++|+.|++++|+++.+ +.|..|.+++|.
T Consensus 307 -~~L~---~L~l~~~~~L~~L~L~~N~l~~--l~--l~~l~~L~~L~l~~N~l~~l-------~~L~~L~l~~n~ 366 (457)
T 3bz5_A 307 -AGIT---ELDLSQNPKLVYLYLNNTELTE--LD--VSHNTKLKSLSCVNAHIQDF-------SSVGKIPALNNN 366 (457)
T ss_dssp -CCCS---CCCCTTCTTCCEEECTTCCCSC--CC--CTTCTTCSEEECCSSCCCBC-------TTGGGSSGGGTS
T ss_pred -Ccce---EechhhcccCCEEECCCCcccc--cc--cccCCcCcEEECCCCCCCCc-------cccccccccCCc
Confidence 0000 1136677899999999999963 43 88999999999999998875 355666666553
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.2e-27 Score=261.68 Aligned_cols=304 Identities=17% Similarity=0.175 Sum_probs=177.6
Q ss_pred cCccEEEEecCCCCCCCCCC--CCCCeeEEEeCCCCcccccc-cccCCCCccEEEcCCCCCCCCCCC-CCCCCCccEEEe
Q 003945 141 NKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTPD-FTEAPNLEELYL 216 (784)
Q Consensus 141 ~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L 216 (784)
.++|+|+++++.++.+|..+ .+++|++|++++|.++.++. .+..+++|++|++++|.+...++. +.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 46777777777777777654 66777777777777776553 567777777777777766655443 566777777777
Q ss_pred cCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCc
Q 003945 217 EGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 296 (784)
Q Consensus 217 ~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~ 296 (784)
++| .+..+|..+ +..+++|++|++++|.+....+..++.+++|++|++++|.++.++ +..
T Consensus 125 ~~n-~l~~l~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~------------ 184 (390)
T 3o6n_A 125 ERN-DLSSLPRGI-----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSL------------ 184 (390)
T ss_dssp CSS-CCCCCCTTT-----TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGG------------
T ss_pred CCC-ccCcCCHHH-----hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--ccc------------
Confidence 765 344444322 112444555666666555555555555566666665555555442 233
Q ss_pred cCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCccccccc
Q 003945 297 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 376 (784)
Q Consensus 297 ~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~ 376 (784)
+++|+.|++++|.... +...++|+.|++++|.+..+|.. ..++|+.|++++|.+.+. ..
T Consensus 185 ------------l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 185 ------------IPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp ------------CTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GG
T ss_pred ------------ccccceeecccccccc-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HH
Confidence 4445555554443221 12234566666666666655543 245677777777665543 35
Q ss_pred ccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccc
Q 003945 377 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLM 456 (784)
Q Consensus 377 ~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 456 (784)
+..+++|++|++++|...+..|..+..+++|+.|++++|.++.+|.....+++|+.|++++|....
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~-------------- 309 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-------------- 309 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC--------------
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee--------------
Confidence 666677777777776666656666666677777777777666665555555566666665554110
Q ss_pred cCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCc
Q 003945 457 GKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 512 (784)
Q Consensus 457 ~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 512 (784)
+|+.+..+++|++|++++|.+.. ++ +..+++|+.|++++|.+.
T Consensus 310 ---------~~~~~~~l~~L~~L~L~~N~i~~--~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 310 ---------VERNQPQFDRLENLYLDHNSIVT--LK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ---------CGGGHHHHTTCSEEECCSSCCCC--CC--CCTTCCCSEEECCSSCEE
T ss_pred ---------cCccccccCcCCEEECCCCccce--eC--chhhccCCEEEcCCCCcc
Confidence 12223445566666666666532 22 455566666666666555
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=5.7e-27 Score=270.54 Aligned_cols=304 Identities=18% Similarity=0.178 Sum_probs=191.1
Q ss_pred cCccEEEEecCCCCCCCCCC--CCCCeeEEEeCCCCcccccc-cccCCCCccEEEcCCCCCCCCCCC-CCCCCCccEEEe
Q 003945 141 NKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTPD-FTEAPNLEELYL 216 (784)
Q Consensus 141 ~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L 216 (784)
.+++.|+++++.+..+|..+ .+++|++|+|++|.+..++. .+..+++|++|+|++|.+...++. ++++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 35666666666666666554 56666666666666666543 566666666666666665555443 466666666666
Q ss_pred cCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCc
Q 003945 217 EGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 296 (784)
Q Consensus 217 ~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~ 296 (784)
++| .+..+|+.+. ..+++|++|++++|.+.+..|..++.+++|++|++++|.+..++
T Consensus 131 ~~n-~l~~l~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------- 187 (597)
T 3oja_B 131 ERN-DLSSLPRGIF-----HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----------------- 187 (597)
T ss_dssp CSS-CCCCCCTTTT-----TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-----------------
T ss_pred eCC-CCCCCCHHHh-----ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-----------------
Confidence 665 3444443221 12344555555555555555555555555555555555554433
Q ss_pred cCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCccccccc
Q 003945 297 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 376 (784)
Q Consensus 297 ~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~ 376 (784)
+..+++|+.|++++|.... +...++|+.|++++|.+..++..+ .++|+.|++++|.+.+ +..
T Consensus 188 ---------~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~ 249 (597)
T 3oja_B 188 ---------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAW 249 (597)
T ss_dssp ---------GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGG
T ss_pred ---------hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--Chh
Confidence 2334555555555543221 223346677777777776665433 3577788888777665 355
Q ss_pred ccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccc
Q 003945 377 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLM 456 (784)
Q Consensus 377 ~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 456 (784)
+..+++|+.|++++|...+..|..++.+++|+.|++++|.++.+|.....+++|+.|++++|...
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~--------------- 314 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL--------------- 314 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC---------------
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC---------------
Confidence 77778888888888777777777777888888888888888777777666777777777777622
Q ss_pred cCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCc
Q 003945 457 GKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 512 (784)
Q Consensus 457 ~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 512 (784)
.+|..+..+++|+.|+|++|.+.. +| +..+++|+.|+|++|.+.
T Consensus 315 --------~i~~~~~~l~~L~~L~L~~N~l~~--~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 315 --------HVERNQPQFDRLENLYLDHNSIVT--LK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp --------CCGGGHHHHTTCSEEECCSSCCCC--CC--CCTTCCCSEEECCSSCEE
T ss_pred --------ccCcccccCCCCCEEECCCCCCCC--cC--hhhcCCCCEEEeeCCCCC
Confidence 124445567778888888887752 33 667778888888888776
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=4.2e-26 Score=249.37 Aligned_cols=258 Identities=18% Similarity=0.150 Sum_probs=157.3
Q ss_pred CccEEEecCCCCCccccccccCCCcCcEEEecCCCccccCh-hhhcccCCceeeccCccCCCCCccc-cccccccCeEee
Q 003945 240 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVA-ISSFQCLRNLKL 317 (784)
Q Consensus 240 ~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L 317 (784)
+|++|++++|.+....+..++.+++|++|++++|.+..++. .+..+++|+.|++++|. +..+|.. +..+++|++|++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEEC
Confidence 33444444444433333444445555555555555544432 24455555555555432 3333333 344555555555
Q ss_pred cCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcC
Q 003945 318 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENV 397 (784)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~ 397 (784)
++|......+..+..+++|++|++++|.++.++ +..+++|+.|++++|.+.. +...++|+.|++++|.....
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~- 220 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV- 220 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-
Confidence 555554444555555666666666666665543 4455666666666665432 22335667777776654432
Q ss_pred CCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCC
Q 003945 398 PDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT 477 (784)
Q Consensus 398 ~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~ 477 (784)
|.. ..++|+.|++++|.++.. +.+..+++|+.|++++|.. .+..+..+..+++|+
T Consensus 221 ~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l----------------------~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 221 RGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNEL----------------------EKIMYHPFVKMQRLE 275 (390)
T ss_dssp ECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC----------------------CEEESGGGTTCSSCC
T ss_pred ccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcC----------------------CCcChhHccccccCC
Confidence 222 235777777777777765 4567778888888887762 222255577788888
Q ss_pred EEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeecccccc
Q 003945 478 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 478 ~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 533 (784)
+|++++|.+. .+|..+..+++|++|+|++|++..+|..+..+++|+.|++++|+
T Consensus 276 ~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 276 RLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EEECCSSCCC--EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred EEECCCCcCc--ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence 8888888885 36777778888888888888888888888888888888888886
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=8.8e-26 Score=260.62 Aligned_cols=257 Identities=18% Similarity=0.162 Sum_probs=140.8
Q ss_pred ccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChh-hhcccCCceeeccCccCCCCCccc-cccccccCeEeec
Q 003945 241 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVA-ISSFQCLRNLKLS 318 (784)
Q Consensus 241 L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~ 318 (784)
|++|++++|.+.+..|..++.+++|++|++++|.+..+|.. ++.+++|+.|++++|. +..+|.. +..+++|++|+++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEee
Confidence 33344444444433334444444444444444444444332 3444444445544432 2233322 3445555555555
Q ss_pred CCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCC
Q 003945 319 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 398 (784)
Q Consensus 319 ~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~ 398 (784)
+|......|..++.+++|+.|++++|.++.++ +..+++|+.|++++|.+.+ +...++|+.|++++|......+
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEEC
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccc
Confidence 55444444445555555555555555555443 3445556666665554332 2233456666666654432221
Q ss_pred CCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCE
Q 003945 399 DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTK 478 (784)
Q Consensus 399 ~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~ 478 (784)
. + .++|+.|++++|.++.. ..+..+++|+.|++++|. +.+..|..++.+++|+.
T Consensus 229 ~-~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~----------------------l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 229 P-V--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNE----------------------LEKIMYHPFVKMQRLER 282 (597)
T ss_dssp S-C--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC----------------------CCEEESGGGTTCSSCCE
T ss_pred c-c--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCc----------------------cCCCCHHHhcCccCCCE
Confidence 1 1 24566666666666653 456666777777777665 12223455666777777
Q ss_pred EecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeecccccc
Q 003945 479 LDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 479 L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 533 (784)
|+|++|.+. .+|..+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|+
T Consensus 283 L~Ls~N~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 283 LYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp EECTTSCCC--EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred EECCCCCCC--CCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence 777777774 35666666777777777777777777777777777777777776
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=2.7e-25 Score=237.12 Aligned_cols=239 Identities=21% Similarity=0.275 Sum_probs=142.1
Q ss_pred CccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccc-cccCCCCccEEEcCCCCCCCC-CCCCCCCCCccEEEecCC
Q 003945 142 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIK-TPDFTEAPNLEELYLEGC 219 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~ 219 (784)
++++++++++.+..+|..+ .++|++|++++|.++.++. .+.++++|++|+|++|.+... +..+..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 5677777777666666544 2456666666666666544 456666666666666655544 224555555555555554
Q ss_pred ccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCC
Q 003945 220 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL 299 (784)
Q Consensus 220 ~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~ 299 (784)
. +..+| ..+. ++|++|++++|.+..++.
T Consensus 111 ~-l~~l~------------------------------~~~~--~~L~~L~l~~n~l~~~~~------------------- 138 (330)
T 1xku_A 111 Q-LKELP------------------------------EKMP--KTLQELRVHENEITKVRK------------------- 138 (330)
T ss_dssp C-CSBCC------------------------------SSCC--TTCCEEECCSSCCCBBCH-------------------
T ss_pred c-CCccC------------------------------hhhc--ccccEEECCCCcccccCH-------------------
Confidence 1 22221 1111 345555555555544432
Q ss_pred CCCccccccccccCeEeecCCCCCc--cCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccc
Q 003945 300 SSLPVAISSFQCLRNLKLSGCSKLK--KFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSI 377 (784)
Q Consensus 300 ~~lp~~l~~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~ 377 (784)
..+..+++|+.|++++|.... ..+..+..+++|+.|++++|.++.+|..+. ++|+.|++++|.+.+..+..+
T Consensus 139 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 139 ----SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp ----HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGG
T ss_pred ----hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHh
Confidence 234445555555555554432 344556666677777777777776665443 677777777777666666667
Q ss_pred cCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCC
Q 003945 378 NGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 439 (784)
Q Consensus 378 ~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 439 (784)
..+++|++|++++|...+..+..+..+++|+.|++++|.++.+|..+..+++|++|++++|.
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc
Confidence 77777777777777666555556666777777777777777666666666666666666655
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=6.7e-25 Score=234.01 Aligned_cols=287 Identities=16% Similarity=0.163 Sum_probs=185.2
Q ss_pred CCCcceEEEcCccccCchhhcCcCccEEEEecCCCCCCCC-CC-CCCCeeEEEeCCCCcccc-cccccCCCCccEEEcCC
Q 003945 119 MTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSH 195 (784)
Q Consensus 119 ~~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~ 195 (784)
..+++.++++++.+..-+..+++.|++|++++|.+..++. .+ .+++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4478999999988877666677899999999999999987 45 899999999999999987 78899999999999999
Q ss_pred CCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCc--cccccccCCCcCcEEEecCC
Q 003945 196 SENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLR--KFPHVVGSMECLQELLLDGT 273 (784)
Q Consensus 196 ~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~--~~~~~l~~l~~L~~L~l~~~ 273 (784)
|.+...+..+. ++|++|++++| .+..++... +..+++|++|++++|.+.. ..+..+..+++|++|++++|
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHEN-EITKVRKSV-----FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHH-----HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred CcCCccChhhc--ccccEEECCCC-cccccCHhH-----hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 98775544443 78999999887 344443321 2235566677777776643 45666677777777777777
Q ss_pred CccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccc
Q 003945 274 DIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSI 353 (784)
Q Consensus 274 ~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l 353 (784)
.++.+|..+. ++|+.|++++|......|..+..+++|++|++++|......+..+..+++|++|++++|.++.+|..+
T Consensus 182 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l 259 (330)
T 1xku_A 182 NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259 (330)
T ss_dssp CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT
T ss_pred ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhh
Confidence 7766665443 45555555554433333444555555555555555444444444444555555555555555444444
Q ss_pred cCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCC------CCCCccEEecCCCccc---cCCccc
Q 003945 354 ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLG------QVESLEELDISETAVR---RPPSSV 424 (784)
Q Consensus 354 ~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~------~l~~L~~L~l~~~~i~---~lp~~~ 424 (784)
..+ ++|++|++++|...+..+..+. ...+|+.|++++|.+. ..|..+
T Consensus 260 ~~l------------------------~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 260 ADH------------------------KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp TTC------------------------SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred ccC------------------------CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 444 4455555544444333222222 2356777777777765 234556
Q ss_pred cccccccEEecCCCC
Q 003945 425 FLMKNLRTLSFSGCN 439 (784)
Q Consensus 425 ~~l~~L~~L~l~~~~ 439 (784)
..+++|+.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 667788888887763
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=5e-25 Score=235.17 Aligned_cols=283 Identities=19% Similarity=0.259 Sum_probs=207.8
Q ss_pred CccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCccccc-ccccCCCCccEEEcCCCCCCCCCC-CCCCCCCccEEEecCC
Q 003945 142 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGC 219 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~ 219 (784)
++++++++++.+..+|..+ .++|++|++++|.+..++ ..+.++++|++|++++|.+....| .+.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 5777777777777777655 357788888888877764 467778888888888877665533 5777888888888776
Q ss_pred ccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCcc---ccChhhhcccCCceeeccCc
Q 003945 220 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK---ELPLSIEHLFGLVQLTLNDC 296 (784)
Q Consensus 220 ~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~~ 296 (784)
.+..+|..+. ++|++|++++|.+....+..++.+++|++|++++|.++ ..|..+..+ +|+.|++++|
T Consensus 113 -~l~~l~~~~~--------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 113 -HLVEIPPNLP--------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp -CCCSCCSSCC--------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred -cCCccCcccc--------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 4555554432 56777888888777666667788888888888888875 344556666 7888888875
Q ss_pred cCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCc-cccCCCCCCEEecCCCCCcccccc
Q 003945 297 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPS 375 (784)
Q Consensus 297 ~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~ 375 (784)
. +..+|..+. ++|++|++++|......+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+. .+|.
T Consensus 183 ~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 183 K-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp B-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred C-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence 4 555666543 688888888887777777778888888888888888887664 6788888888888888765 6777
Q ss_pred cccCCCCCCEEEccCCCCCCcCCCCCCC------CCCccEEecCCCccc--c-CCccccccccccEEecCCCC
Q 003945 376 SINGLKSLKTLNLSGCCKLENVPDTLGQ------VESLEELDISETAVR--R-PPSSVFLMKNLRTLSFSGCN 439 (784)
Q Consensus 376 ~~~~l~~L~~L~Ls~c~~l~~~~~~l~~------l~~L~~L~l~~~~i~--~-lp~~~~~l~~L~~L~l~~~~ 439 (784)
.+..+++|+.|++++|......+..+.. ..+|+.|++.+|.+. . .|..+..+++|+.+++++|+
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7888888899999888776555555443 467899999999876 3 44567789999999998875
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=6.2e-25 Score=234.45 Aligned_cols=239 Identities=17% Similarity=0.188 Sum_probs=143.7
Q ss_pred CeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCC-CCCCCCCccEEEecCCccCcccCccccccCcccccCCcc
Q 003945 164 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 242 (784)
Q Consensus 164 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 242 (784)
+|++++++++.++.+|..+. ++|++|++++|.+...++ .+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L-------------------------- 85 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL-------------------------- 85 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--------------------------
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEEC--------------------------
Confidence 45566666666655555442 455555555554443322 3444444444444
Q ss_pred EEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCC
Q 003945 243 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 322 (784)
Q Consensus 243 ~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 322 (784)
++|.+....|..++++++|++|++++|.+..+|..+. ++|+.|++++|......+..+..+++|+.|++++|..
T Consensus 86 ----~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 86 ----VNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp ----CSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred ----CCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 4444444445566666777777777777776666554 5677777776543332233466677777777777665
Q ss_pred Cc--cCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCC
Q 003945 323 LK--KFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT 400 (784)
Q Consensus 323 ~~--~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~ 400 (784)
.. ..+..+..+ +|+.|++++|.++.+|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+..
T Consensus 160 ~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 160 ENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp BGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred ccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 32 445555555 77777777777777766543 56777777777666655566666667777777666665555555
Q ss_pred CCCCCCccEEecCCCccccCCccccccccccEEecCCCC
Q 003945 401 LGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 439 (784)
Q Consensus 401 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 439 (784)
+..+++|+.|++++|.++.+|..+..+++|+.|++++|.
T Consensus 237 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred hhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 666666666666666666666555555555555555554
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=7.9e-26 Score=238.92 Aligned_cols=251 Identities=20% Similarity=0.292 Sum_probs=146.1
Q ss_pred CccEEEecCCCCCc--cccccccCCCcCcEEEecC-CCcc-ccChhhhcccCCceeeccCccCCCCCccccccccccCeE
Q 003945 240 SLKILILSGCLKLR--KFPHVVGSMECLQELLLDG-TDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNL 315 (784)
Q Consensus 240 ~L~~L~ls~~~~~~--~~~~~l~~l~~L~~L~l~~-~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L 315 (784)
+++.|++++|.+.+ .+|..++++++|++|++++ +.+. .+|..+.++++|++|++++|...+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 44555555555555 5555555555555555553 4443 444445555555555555443333444444444444444
Q ss_pred eecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCC-CCCEEEccCCCCC
Q 003945 316 KLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLK-SLKTLNLSGCCKL 394 (784)
Q Consensus 316 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~-~L~~L~Ls~c~~l 394 (784)
++++|...+..|..+..+++|++|++++|.++ +.+|..+..++ +|++|++++|...
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----------------------~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRIS-----------------------GAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-----------------------EECCGGGGCCCTTCCEEECCSSEEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCccc-----------------------CcCCHHHhhhhhcCcEEECcCCeee
Confidence 44444444444444444444444444444444 44444444444 4444444444444
Q ss_pred CcCCCCCCCCCCccEEecCCCccc-cCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCC
Q 003945 395 ENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGL 473 (784)
Q Consensus 395 ~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l 473 (784)
+.+|..+..+. |+.|++++|.++ ..|..+..+++|+.|++++|.... . ++.+..+
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------~-~~~~~~l 243 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF----------------------D-LGKVGLS 243 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC----------------------B-GGGCCCC
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee----------------------e-cCccccc
Confidence 44444444443 555555555544 233444455555555555554110 0 2225667
Q ss_pred CCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCc-ccchhhhcCCCCCeeccccccccCcCC
Q 003945 474 RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLP 539 (784)
Q Consensus 474 ~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~i~ 539 (784)
++|++|++++|.+. +.+|..+..+++|++|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 244 ~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 244 KNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTCCEEECCSSCCE-ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCCCEEECcCCccc-CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 88999999999886 578999999999999999999999 77765 889999999999999776543
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=2.9e-27 Score=264.81 Aligned_cols=274 Identities=19% Similarity=0.213 Sum_probs=135.3
Q ss_pred ccEEEecCCCCCc----cccccccCCCcCcEEEecCCCcccc-Chhhh-----cccCCceeeccCccCCCC----Ccccc
Q 003945 241 LKILILSGCLKLR----KFPHVVGSMECLQELLLDGTDIKEL-PLSIE-----HLFGLVQLTLNDCKNLSS----LPVAI 306 (784)
Q Consensus 241 L~~L~ls~~~~~~----~~~~~l~~l~~L~~L~l~~~~i~~l-p~~i~-----~l~~L~~L~L~~~~~~~~----lp~~l 306 (784)
|++|++++|.+.. .++..+..+++|++|++++|.+... +..+. ..++|+.|++++|..... ++..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 4444444444432 3344455555555555555554321 11111 123455555555432221 23334
Q ss_pred ccccccCeEeecCCCCCccCccccc-----CCCCCCEEeccCcCCcc-----cCccccCCCCCCEEecCCCCCcccc---
Q 003945 307 SSFQCLRNLKLSGCSKLKKFPQIVT-----TMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNFARV--- 373 (784)
Q Consensus 307 ~~l~~L~~L~L~~~~~~~~~~~~~~-----~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~~~~~~~l--- 373 (784)
..+++|++|++++|......+..+. ..++|++|++++|.++. ++..+..+++|++|++++|.+....
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 4445555555555543322222111 23455666666655553 3444555566666666665543321
Q ss_pred --cccccCCCCCCEEEccCCCCCCc----CCCCCCCCCCccEEecCCCccccCC-cccc-----ccccccEEecCCCCCC
Q 003945 374 --PSSINGLKSLKTLNLSGCCKLEN----VPDTLGQVESLEELDISETAVRRPP-SSVF-----LMKNLRTLSFSGCNGP 441 (784)
Q Consensus 374 --~~~~~~l~~L~~L~Ls~c~~l~~----~~~~l~~l~~L~~L~l~~~~i~~lp-~~~~-----~l~~L~~L~l~~~~~l 441 (784)
+.....+++|++|++++|..... ++..+..+++|+.|++++|.+.... ..+. ..++|+.|++++|...
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 11122355666666666544332 3444445566666666666554211 1111 1246666776666511
Q ss_pred CCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCccc----C-CCCCCCEEecCCCCCc----
Q 003945 442 PSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI----G-NLHSLNELYLSKNNFV---- 512 (784)
Q Consensus 442 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l----~-~l~~L~~L~L~~n~l~---- 512 (784)
.. ....++..+..+++|++|++++|.+.+ ..+..+ . ..++|++|++++|.++
T Consensus 327 ~~------------------~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 387 (461)
T 1z7x_W 327 AA------------------CCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRVLWLADCDVSDSSC 387 (461)
T ss_dssp GG------------------GHHHHHHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred hH------------------HHHHHHHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCceEEEECCCCCCChhhH
Confidence 00 011123334456677777777776642 112222 2 1567777777777777
Q ss_pred -ccchhhhcCCCCCeecccccc
Q 003945 513 -TLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 513 -~lp~~i~~l~~L~~L~L~~c~ 533 (784)
.+|..+..+++|++|++++|+
T Consensus 388 ~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 388 SSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHhCCCccEEECCCCC
Confidence 567777777777777777775
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=5.2e-24 Score=226.37 Aligned_cols=229 Identities=26% Similarity=0.365 Sum_probs=166.0
Q ss_pred cCccEEEEecCCCCCCCCCC-CCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCC
Q 003945 141 NKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 219 (784)
Q Consensus 141 ~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~ 219 (784)
..++.|+++++.+..+|..+ .+++|++|+|++|.+..+|..+..+++|++|+|++|.+...++.+.++++|++|++++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 47888999999998999877 89999999999999999999899999999999999987755557888899999999888
Q ss_pred ccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCC
Q 003945 220 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL 299 (784)
Q Consensus 220 ~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~ 299 (784)
..+..+|..++... ++..++.+++|++|++++|.++.+|..+..+++|+.|++++|. +
T Consensus 161 ~~~~~~p~~~~~~~---------------------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l 218 (328)
T 4fcg_A 161 PELTELPEPLASTD---------------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-L 218 (328)
T ss_dssp TTCCCCCSCSEEEC----------------------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-C
T ss_pred CCccccChhHhhcc---------------------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-C
Confidence 77777776554311 1122344556666666666666666666666666666666643 3
Q ss_pred CCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCc-ccCccccCCCCCCEEecCCCCCccccccccc
Q 003945 300 SSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSIN 378 (784)
Q Consensus 300 ~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~ 378 (784)
..+|..+..+++|++|++++|...+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..++
T Consensus 219 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred CcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 345555666666666666666666666666666667777777765544 5666677777788888888887888888888
Q ss_pred CCCCCCEEEccCC
Q 003945 379 GLKSLKTLNLSGC 391 (784)
Q Consensus 379 ~l~~L~~L~Ls~c 391 (784)
.+++|+.+.+..+
T Consensus 299 ~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 299 QLPANCIILVPPH 311 (328)
T ss_dssp GSCTTCEEECCGG
T ss_pred hccCceEEeCCHH
Confidence 8888888877653
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=7.4e-24 Score=225.16 Aligned_cols=221 Identities=23% Similarity=0.381 Sum_probs=159.8
Q ss_pred cCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecC
Q 003945 286 FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLN 365 (784)
Q Consensus 286 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~ 365 (784)
.+++.|++++| .+..+|..+..+++|++|++++|... .+|..++.+++|++|++++|.+..+|..+..+++|+.|+++
T Consensus 81 ~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 34444444443 23344444444555555555554433 44555555555556666666666666666666666666666
Q ss_pred CCCCccccccccc---------CCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecC
Q 003945 366 DCKNFARVPSSIN---------GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFS 436 (784)
Q Consensus 366 ~~~~~~~l~~~~~---------~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 436 (784)
+|...+.+|..+. ++++|++|++++|... .+|..++.+++|+.|++++|.++.+|..+..+++|+.|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 6666666665544 4888999999888665 78888888999999999999999988888889999999999
Q ss_pred CCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCc-ccc
Q 003945 437 GCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLP 515 (784)
Q Consensus 437 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp 515 (784)
+|... +.+|..++.+++|++|++++|++. +.+|..++.+++|++|+|++|++. .+|
T Consensus 238 ~n~~~----------------------~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 238 GCTAL----------------------RNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TCTTC----------------------CBCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCcch----------------------hhhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 88733 334677888999999999998886 678888999999999999998766 889
Q ss_pred hhhhcCCCCCeeccccc
Q 003945 516 ASINSLLNLKELEMEDC 532 (784)
Q Consensus 516 ~~i~~l~~L~~L~L~~c 532 (784)
+.+.++++|+.+.+..+
T Consensus 295 ~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 295 SLIAQLPANCIILVPPH 311 (328)
T ss_dssp GGGGGSCTTCEEECCGG
T ss_pred HHHhhccCceEEeCCHH
Confidence 99999999999988765
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=2.5e-27 Score=265.28 Aligned_cols=354 Identities=21% Similarity=0.185 Sum_probs=185.4
Q ss_pred CCcceEEEcCccccCc-----hhhcCcCccEEEEecCCCC-----CCCCCC-CCCCeeEEEeCCCCcccc-cc-cccCCC
Q 003945 120 TNLGLLKINNVQLLEG-----LEYLSNKLRLLDWHRYPLK-----SLPSNL-QLDKIVEFKMCYSRIEEL-WK-GIKHLN 186 (784)
Q Consensus 120 ~~Lr~L~l~~~~l~~~-----~~~l~~~Lr~L~l~~~~l~-----~lp~~~-~l~~L~~L~L~~~~i~~l-~~-~~~~l~ 186 (784)
++|+.|+++++.+... +..+ ++|++|++++|.+. .++..+ .+++|++|++++|.+... +. -...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHH-TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhc-CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4566777776665432 1222 36777777776664 334444 556666666666666531 11 112233
Q ss_pred ----CccEEEcCCCCCCCC-----CCCCCCCCCccEEEecCCccCccc-CccccccCcccccCCccEEEecCCCCCcccc
Q 003945 187 ----MLKVMKLSHSENLIK-----TPDFTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIFVESLKILILSGCLKLRKFP 256 (784)
Q Consensus 187 ----~L~~L~L~~~~~~~~-----~~~l~~l~~L~~L~L~~~~~l~~~-~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~ 256 (784)
+|++|+|++|.+... +..+..+++|++|++++|. +... +..+... -....++|++|++++|.+....+
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEG-LLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHH-HTSTTCCCCEEECTTSCCBGGGH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHH-HhcCCCcceEEECCCCCCCHHHH
Confidence 566666666654421 2235556666666666653 2211 1111100 00012234555555554433210
Q ss_pred ccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccc-----cccccCeEeecCCCCCcc----Cc
Q 003945 257 HVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAIS-----SFQCLRNLKLSGCSKLKK----FP 327 (784)
Q Consensus 257 ~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~-----~l~~L~~L~L~~~~~~~~----~~ 327 (784)
. .++..+..+++|+.|++++|......+..+. ..++|++|++++|..... ++
T Consensus 160 ~-------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 160 E-------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp H-------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred H-------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 0 1233344444555555554432111111111 133566666665544432 34
Q ss_pred ccccCCCCCCEEeccCcCCccc------CccccCCCCCCEEecCCCCCccc----ccccccCCCCCCEEEccCCCCCCcC
Q 003945 328 QIVTTMEDLSELNLDGTSITEV------PSSIELLPGLELLNLNDCKNFAR----VPSSINGLKSLKTLNLSGCCKLENV 397 (784)
Q Consensus 328 ~~~~~l~~L~~L~L~~~~i~~l------p~~l~~l~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~Ls~c~~l~~~ 397 (784)
..+..+++|++|++++|.+... +.....+++|+.|++++|.+... ++..+..+++|++|++++|......
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 4555566666666666665532 11223466667777766655443 4555555667777777766543322
Q ss_pred CCCC-----CCCCCccEEecCCCcccc-----CCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccC
Q 003945 398 PDTL-----GQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALML 467 (784)
Q Consensus 398 ~~~l-----~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 467 (784)
+..+ ...++|+.|++++|.++. ++..+..+++|+.|++++|..... ....+.
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~------------------~~~~l~ 362 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA------------------GVRELC 362 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH------------------HHHHHH
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc------------------cHHHHH
Confidence 2111 122577777777777663 355566678888888888751100 000001
Q ss_pred CCCC-CCCCCCEEecCCCCCCC---CCCCcccCCCCCCCEEecCCCCCcc
Q 003945 468 PSLS-GLRSLTKLDLSDCGLGE---GAIPSDIGNLHSLNELYLSKNNFVT 513 (784)
Q Consensus 468 ~~l~-~l~~L~~L~Ls~~~l~~---~~~p~~l~~l~~L~~L~L~~n~l~~ 513 (784)
..+. ..++|++|++++|.+++ ..+|..+..+++|++|++++|+++.
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 1111 26789999999998862 1577788889999999999998873
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.3e-24 Score=229.65 Aligned_cols=245 Identities=16% Similarity=0.216 Sum_probs=129.8
Q ss_pred CCeeEEEeCCCCcc---cccccccCCCCccEEEcCC-CCCCCCCC-CCCCCCCccEEEecCCccCcccCccccccCcccc
Q 003945 163 DKIVEFKMCYSRIE---ELWKGIKHLNMLKVMKLSH-SENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF 237 (784)
Q Consensus 163 ~~L~~L~L~~~~i~---~l~~~~~~l~~L~~L~L~~-~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~ 237 (784)
.+++.|+++++.+. .+|..+.++++|++|++++ +.....+| .+.++++|++|++++|.....+|..+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC------
Confidence 46667777776666 3666677777777777763 54443333 4666666666666665322233333322
Q ss_pred cCCccEEEecCCCCCccccccccCCCcCcEEEecCCCcc-ccChhhhccc-CCceeeccCccCCCCCccccccccccCeE
Q 003945 238 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK-ELPLSIEHLF-GLVQLTLNDCKNLSSLPVAISSFQCLRNL 315 (784)
Q Consensus 238 l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~L 315 (784)
+++|++|++++|.+.+.+|..++.+++|++|++++|.+. .+|..+..++ +|+.|++++|...+.+|..+..++ |+.|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 344455666666555556666666666666666666665 5555555555 556666655544444555454444 5555
Q ss_pred eecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCC
Q 003945 316 KLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 395 (784)
Q Consensus 316 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~ 395 (784)
++++|......|..+..+++|+.|++++|.++..+..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|...+
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 55555444444555555555555555555554333334444455555555554444444444444444444444444444
Q ss_pred cCCCCCCCCCCccEEecCCC
Q 003945 396 NVPDTLGQVESLEELDISET 415 (784)
Q Consensus 396 ~~~~~l~~l~~L~~L~l~~~ 415 (784)
.+|.. +.+++|+.|++++|
T Consensus 283 ~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 283 EIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp ECCCS-TTGGGSCGGGTCSS
T ss_pred cCCCC-ccccccChHHhcCC
Confidence 44433 33444444444444
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=4e-25 Score=255.65 Aligned_cols=367 Identities=16% Similarity=0.140 Sum_probs=201.8
Q ss_pred cCccEEEEecCCCCCC-CCCC-C-C-CCeeEEEeCCCC-cc--cccccccCCCCccEEEcCCCCCCCCCC-----CCCCC
Q 003945 141 NKLRLLDWHRYPLKSL-PSNL-Q-L-DKIVEFKMCYSR-IE--ELWKGIKHLNMLKVMKLSHSENLIKTP-----DFTEA 208 (784)
Q Consensus 141 ~~Lr~L~l~~~~l~~l-p~~~-~-l-~~L~~L~L~~~~-i~--~l~~~~~~l~~L~~L~L~~~~~~~~~~-----~l~~l 208 (784)
++|++|+++++.+... +..+ . + .+|++|+|+++. +. .++.....+++|++|+|++|.+..... -...+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 3556666655543211 1111 1 1 236666665554 11 122333455666666666664322211 12345
Q ss_pred CCccEEEecCCccCcccC-ccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCc----cccChhhh
Q 003945 209 PNLEELYLEGCTKLRKVH-PSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDI----KELPLSIE 283 (784)
Q Consensus 209 ~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i----~~lp~~i~ 283 (784)
++|++|++++|.. ..+. ..+. .-+..+++|++|++++|...+ ++..++.+++|++|+++.... ...+..+.
T Consensus 192 ~~L~~L~L~~n~~-~~~~~~~l~--~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 192 TSLEVLNFYMTEF-AKISPKDLE--TIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp CCCCEEECTTCCC-SSCCHHHHH--HHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred CCccEEEeeccCC-CccCHHHHH--HHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 5666666665422 1000 0000 001124556666666655443 555666666666666654221 13344555
Q ss_pred cccCCceeeccCccCCCCCccccccccccCeEeecCCCCCcc-CcccccCCCCCCEEeccCcCCc--ccCccccCCCCCC
Q 003945 284 HLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK-FPQIVTTMEDLSELNLDGTSIT--EVPSSIELLPGLE 360 (784)
Q Consensus 284 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~~~i~--~lp~~l~~l~~L~ 360 (784)
.+++|+.|++.++ ....+|..+..+++|++|++++|..... ++..+..+++|+.|++. +.+. .++.....+++|+
T Consensus 268 ~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred ccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 6666666666653 3445555566666777777777663322 22345666777777776 3333 2333345566777
Q ss_pred EEecCC----------CCCccc--ccccccCCCCCCEEEccCCCCCCcCCCCCCC-CCCccEEecC----CCccccCC--
Q 003945 361 LLNLND----------CKNFAR--VPSSINGLKSLKTLNLSGCCKLENVPDTLGQ-VESLEELDIS----ETAVRRPP-- 421 (784)
Q Consensus 361 ~L~L~~----------~~~~~~--l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~-l~~L~~L~l~----~~~i~~lp-- 421 (784)
+|++++ |..... ++.....+++|++|+++.+...+..+..++. +++|+.|+++ .+.++..|
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 777773 332221 2222345677777777555444444434433 6677777775 45565533
Q ss_pred ----ccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCC-CCCCCCCEEecCCCCCCCCCCCcccC
Q 003945 422 ----SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSL-SGLRSLTKLDLSDCGLGEGAIPSDIG 496 (784)
Q Consensus 422 ----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~Ls~~~l~~~~~p~~l~ 496 (784)
..+..+++|++|+++.|.+... ...+..+ ..+++|++|++++|++++..++..+.
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~--------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 485 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLT--------------------DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR 485 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCC--------------------HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCcc--------------------HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHh
Confidence 2355688888888877653110 0001111 24678888999888887555666677
Q ss_pred CCCCCCEEecCCCCCc--ccchhhhcCCCCCeecccccc
Q 003945 497 NLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 497 ~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~ 533 (784)
++++|++|+|++|.++ .++..+..+++|+.|+|++|+
T Consensus 486 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 8888999999988876 356566788889999999887
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=6e-22 Score=219.90 Aligned_cols=243 Identities=21% Similarity=0.261 Sum_probs=196.1
Q ss_pred CcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCc
Q 003945 265 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 344 (784)
Q Consensus 265 L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 344 (784)
...++..+..++.+|..+. ++++.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4567777777777877664 57888888886544444566788888888888888777767778888889999999999
Q ss_pred CCcccCc-cccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCC-CCCCCCCccEEecCCCccccCCc
Q 003945 345 SITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPS 422 (784)
Q Consensus 345 ~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~-~l~~l~~L~~L~l~~~~i~~lp~ 422 (784)
.++.+|. .+..+++|+.|++++|.+....+..+..+++|++|++++|..++.++. .+..+++|+.|++++|.++.+|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 8888776 578889999999999887766666788899999999998887777665 57888999999999999998874
Q ss_pred cccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCC
Q 003945 423 SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLN 502 (784)
Q Consensus 423 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~ 502 (784)
+..+++|+.|++++|.. ....+..+..+++|++|++++|.+. +..+..+..+++|+
T Consensus 203 -~~~l~~L~~L~Ls~N~l----------------------~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHL----------------------SAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLV 258 (440)
T ss_dssp -CTTCSSCCEEECTTSCC----------------------CEECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCC
T ss_pred -cCCCcccCEEECCCCcc----------------------CccChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCC
Confidence 77888999999998862 2223567888899999999999986 55677788999999
Q ss_pred EEecCCCCCcccchh-hhcCCCCCeecccccc
Q 003945 503 ELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 533 (784)
Q Consensus 503 ~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 533 (784)
.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 999999999987764 5778899999998886
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=3.7e-22 Score=210.36 Aligned_cols=241 Identities=22% Similarity=0.226 Sum_probs=130.6
Q ss_pred EEEecCCCccccChhhhcccCCceeeccCccCCCCCccc-cccccccCeEeecCCCCCcc--CcccccCCCCCCEEeccC
Q 003945 267 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVA-ISSFQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDG 343 (784)
Q Consensus 267 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~L~~ 343 (784)
.++.+++.++.+|..+. ++|+.|++++|. ++.+|.. +..+++|++|++++|..... .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 45555555555555432 456666666543 3344433 45566666666666544321 234444566666666666
Q ss_pred cCCcccCccccCCCCCCEEecCCCCCccccc-ccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCcccc--C
Q 003945 344 TSITEVPSSIELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR--P 420 (784)
Q Consensus 344 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~--l 420 (784)
|.+..+|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|...+..+..+..+++|+.|++++|.+.. +
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 6666666666666666666666665544433 345566666666666666555555556666666666666666553 4
Q ss_pred CccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCC
Q 003945 421 PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHS 500 (784)
Q Consensus 421 p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~ 500 (784)
|..+..+++|+.|++++|.. ....+..+..+++|++|++++|.+. +..+..+..+++
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l----------------------~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~ 224 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQL----------------------EQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNS 224 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCC----------------------CEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTT
T ss_pred hhHHhhCcCCCEEECCCCCc----------------------CCcCHHHhcCCCCCCEEECCCCccC-ccChhhccCccc
Confidence 55555555555555555541 1111334455555555555555553 222334555555
Q ss_pred CCEEecCCCCCcc-cchhhhcCC-CCCeecccccc
Q 003945 501 LNELYLSKNNFVT-LPASINSLL-NLKELEMEDCK 533 (784)
Q Consensus 501 L~~L~L~~n~l~~-lp~~i~~l~-~L~~L~L~~c~ 533 (784)
|+.|+|++|.+.. .|..+..++ +|+.|++++|+
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 5555555555553 233344442 45555544443
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=7.1e-22 Score=220.12 Aligned_cols=243 Identities=23% Similarity=0.243 Sum_probs=174.7
Q ss_pred CcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCc
Q 003945 265 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 344 (784)
Q Consensus 265 L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 344 (784)
...++.++..++.+|..+. ++|+.|++++|......|..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3455666666666665543 46777777776544444556777777777777777666666677777788888888888
Q ss_pred CCcccCcc-ccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCC-CCCCCCCccEEecCCCccccCCc
Q 003945 345 SITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPS 422 (784)
Q Consensus 345 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~-~l~~l~~L~~L~l~~~~i~~lp~ 422 (784)
.++.+|.. +..+++|+.|++++|.+....+..+..+++|+.|++++|..++.++. .+..+++|+.|++++|.++.+|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 87777654 67778888888888776655555677788888888888777776655 4677888888888888888775
Q ss_pred cccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCC
Q 003945 423 SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLN 502 (784)
Q Consensus 423 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~ 502 (784)
.+..+++|+.|++++|.. ....+..+..+++|++|++++|.+. +..+..+..+++|+
T Consensus 213 ~~~~l~~L~~L~Ls~N~l----------------------~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHF----------------------PEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLV 269 (452)
T ss_dssp CCTTCTTCCEEECTTSCC----------------------SEECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred cccccccccEEECcCCcC----------------------cccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCC
Confidence 466777888888887762 2222445677788888888888875 45566778888888
Q ss_pred EEecCCCCCcccchh-hhcCCCCCeecccccc
Q 003945 503 ELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 533 (784)
Q Consensus 503 ~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 533 (784)
.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 888888888877654 4677788888888775
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=9.7e-23 Score=219.41 Aligned_cols=251 Identities=16% Similarity=0.195 Sum_probs=177.0
Q ss_pred cCcEEEecCCCccccCh-hhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEecc
Q 003945 264 CLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 342 (784)
Q Consensus 264 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 342 (784)
+|++|++++|.++.+|. .+..+++|+.|++++|......|..+..+++|++|++++|......+..++.+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 55555555555555554 45566666666666654333334456667777777777766555444557778888888888
Q ss_pred CcCCcccCc--cccCCCCCCEEecCCCCCccc-ccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCcccc
Q 003945 343 GTSITEVPS--SIELLPGLELLNLNDCKNFAR-VPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 419 (784)
Q Consensus 343 ~~~i~~lp~--~l~~l~~L~~L~L~~~~~~~~-l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~ 419 (784)
+|.++.+|. .+..+++|+.|++++|...+. .+..+.++++|++|++++|...+..|..++.+++|+.|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 888887776 578888888888888854444 45678888899999999888877778888888999999999998887
Q ss_pred CCcccc-ccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCC---CCCccc
Q 003945 420 PPSSVF-LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG---AIPSDI 495 (784)
Q Consensus 420 lp~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~---~~p~~l 495 (784)
+|..+. .+++|+.|++++|........ ........+.++.++++++.+.+. .+|..+
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFS-------------------ELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred chhhhhhhcccccEEECCCCcccccccc-------------------ccccccccchhhccccccccccCcchhhhHHHH
Confidence 776544 478899999988863221100 011123456788888888877532 356677
Q ss_pred CCCCCCCEEecCCCCCcccchhh-hcCCCCCeecccccc
Q 003945 496 GNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCK 533 (784)
Q Consensus 496 ~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~ 533 (784)
..+++|++|++++|+++.+|..+ ..+++|++|++++|+
T Consensus 274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 88888888999888888888775 788888888888885
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=5e-21 Score=218.94 Aligned_cols=255 Identities=20% Similarity=0.196 Sum_probs=140.6
Q ss_pred CcceEEEcCccccCchhhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCC
Q 003945 121 NLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLI 200 (784)
Q Consensus 121 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~ 200 (784)
+++.|+++++.+..-+..++++|++|++++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++++|.+..
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC
Confidence 45666666666554444444566666666666666655 45566666666666665554 45566666666654443
Q ss_pred CCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccCh
Q 003945 201 KTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL 280 (784)
Q Consensus 201 ~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~ 280 (784)
.++ .+++|++|++++| .+..+|.. +++|++|++++ |.++.+|.
T Consensus 116 l~~---~l~~L~~L~L~~N-~l~~lp~~---------l~~L~~L~Ls~------------------------N~l~~l~~ 158 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGN-QLTSLPVL---------PPGLQELSVSD------------------------NQLASLPA 158 (622)
T ss_dssp CCC---CCTTCCEEECCSS-CCSCCCCC---------CTTCCEEECCS------------------------SCCSCCCC
T ss_pred CCC---CCCCcCEEECCCC-CCCcCCCC---------CCCCCEEECcC------------------------CcCCCcCC
Confidence 322 3455555555554 23333321 13444455554 44444443
Q ss_pred hhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCC
Q 003945 281 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLE 360 (784)
Q Consensus 281 ~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~ 360 (784)
. +.+|+.|++.+| .+..+| ..+++|+.|++++|.... +|. .+++|+.|++++|.++.+|.. +++|+
T Consensus 159 ~---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~ 224 (622)
T 3g06_A 159 L---PSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLK 224 (622)
T ss_dssp C---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCC
T ss_pred c---cCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCC
Confidence 1 234444555443 233344 224555555555544322 222 234566666666666665542 35666
Q ss_pred EEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCC
Q 003945 361 LLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 439 (784)
Q Consensus 361 ~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 439 (784)
.|++++|.+.+ +| ..+++|+.|++++|... .+|. .+++|+.|++++|.++.+|..+..+++|+.|++++|.
T Consensus 225 ~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 225 ELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred EEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 66776665443 34 34566777777776443 4554 4567777777777777777777777777777777776
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=2.4e-23 Score=220.41 Aligned_cols=260 Identities=17% Similarity=0.141 Sum_probs=177.0
Q ss_pred EEecCCCCCccccccccCCCcCcEEEecCCCccccC-hhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCC
Q 003945 244 LILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 322 (784)
Q Consensus 244 L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 322 (784)
.+++.+.+.......+..+++|++|++++|.++.++ ..+..+++|+.|++++|.... .+. +..+++|++|++++|..
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-hhhcCCCCEEECcCCcc
Confidence 333333333333333444555555555555555544 345555666666665543322 222 55566666666666543
Q ss_pred CccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCC-
Q 003945 323 LKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTL- 401 (784)
Q Consensus 323 ~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l- 401 (784)
.. + ...++|++|++++|.++.++.. .+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+..+
T Consensus 93 ~~-l----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 93 QE-L----LVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EE-E----EECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred cc-c----cCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 21 1 1236777777777777765532 35677888888877777666677777888888888877766555554
Q ss_pred CCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEec
Q 003945 402 GQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 481 (784)
Q Consensus 402 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L 481 (784)
..+++|+.|++++|.++.++... .+++|+.|++++|... .+++.+..+++|++|++
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~-----------------------~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLA-----------------------FMGPEFQSAAGVTWISL 221 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCC-----------------------EECGGGGGGTTCSEEEC
T ss_pred hccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCC-----------------------cchhhhcccCcccEEEC
Confidence 46778888888888888775443 4788888888887621 12445777889999999
Q ss_pred CCCCCCCCCCCcccCCCCCCCEEecCCCCCc--ccchhhhcCCCCCeeccccccccCcC
Q 003945 482 SDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRLQFL 538 (784)
Q Consensus 482 s~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~i 538 (784)
++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++.+|+.++..
T Consensus 222 ~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 222 RNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TTSCCC--EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cCCccc--chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 999985 48888999999999999999998 78889999999999999988877654
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=5.2e-22 Score=209.19 Aligned_cols=244 Identities=20% Similarity=0.259 Sum_probs=138.3
Q ss_pred cEEEEecCCCCCCCCCCCCCCeeEEEeCCCCccccccc-ccCCCCccEEEcCCCCCCCC---CCCCCCCCCccEEEecCC
Q 003945 144 RLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIK---TPDFTEAPNLEELYLEGC 219 (784)
Q Consensus 144 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~---~~~l~~l~~L~~L~L~~~ 219 (784)
+.++++++.++.+|..+. ++|++|++++|.++.+|.. +.++++|++|+|++|.+... +..+..+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~--------- 79 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS--------- 79 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC---------
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccc---------
Confidence 345555555666665432 4555666666655555543 35555555555555543211 112222333
Q ss_pred ccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccCh--hhhcccCCceeeccCcc
Q 003945 220 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL--SIEHLFGLVQLTLNDCK 297 (784)
Q Consensus 220 ~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L~~~~ 297 (784)
|++|++++|.+. .+|..+..+++|++|++++|.+..++. .+..+++|+.|++++|.
T Consensus 80 ---------------------L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 80 ---------------------LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp ---------------------CCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ---------------------cCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 444444444332 234445555666666666666655543 45556666666666654
Q ss_pred CCCCCccccccccccCeEeecCCCCCc-cCcccccCCCCCCEEeccCcCCccc-CccccCCCCCCEEecCCCCCcccccc
Q 003945 298 NLSSLPVAISSFQCLRNLKLSGCSKLK-KFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPS 375 (784)
Q Consensus 298 ~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~l~~ 375 (784)
.....+..+..+++|++|++++|.... ..|..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+.+..+.
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 444444455556666666666655443 3555666666666666666666655 44566666677777766666555555
Q ss_pred cccCCCCCCEEEccCCCCCCcCCCCCCCCC-CccEEecCCCcccc
Q 003945 376 SINGLKSLKTLNLSGCCKLENVPDTLGQVE-SLEELDISETAVRR 419 (784)
Q Consensus 376 ~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~-~L~~L~l~~~~i~~ 419 (784)
.+..+++|+.|++++|...+..|..+..++ +|+.|++++|.+..
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 566666777777777666666666666663 66777776666653
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=4.3e-25 Score=255.40 Aligned_cols=373 Identities=14% Similarity=0.088 Sum_probs=267.2
Q ss_pred CCCCeeEEEeCCCCccc-ccccccC-CC-CccEEEcCCCCCCCC--CCC-CCCCCCccEEEecCCccCcccCc-cccccC
Q 003945 161 QLDKIVEFKMCYSRIEE-LWKGIKH-LN-MLKVMKLSHSENLIK--TPD-FTEAPNLEELYLEGCTKLRKVHP-SLLLHN 233 (784)
Q Consensus 161 ~l~~L~~L~L~~~~i~~-l~~~~~~-l~-~L~~L~L~~~~~~~~--~~~-l~~l~~L~~L~L~~~~~l~~~~~-~i~~l~ 233 (784)
.+++|++|+|+++.+.. .+..+.. ++ +|++|+|++|..... ++. ...+++|++|++++|.. ..... .+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~-- 186 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDGKWLHE-- 186 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE-ECCCSHHHHH--
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccc-cCcchhHHHH--
Confidence 57899999999998764 3344444 34 499999999863211 111 23789999999999842 21110 0111
Q ss_pred cccccCCccEEEecCCCCC----ccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCC---CCCcccc
Q 003945 234 KLIFVESLKILILSGCLKL----RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL---SSLPVAI 306 (784)
Q Consensus 234 ~L~~l~~L~~L~ls~~~~~----~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~---~~lp~~l 306 (784)
-...+++|++|++++|... ..++..+.++++|++|+++++.+..+|..+..+++|+.|+++.+... ...+..+
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 1234678999999999876 45677778899999999999999999999999999999999864333 2344557
Q ss_pred ccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCc--ccCccccCCCCCCEEecCCCCCcccccccccCCCCCC
Q 003945 307 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLK 384 (784)
Q Consensus 307 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 384 (784)
..+++|+.|+++++ ....+|..+..+++|++|++++|.+. .++..+..+++|+.|++.++.....++.....+++|+
T Consensus 267 ~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 77899999999884 45667888889999999999999976 3334478899999999995443344455556789999
Q ss_pred EEEccC----------CCCCCc--CCCCCCCCCCccEEecCCCcccc-CCccccc-cccccEEecCCCC---CCCCCCCc
Q 003945 385 TLNLSG----------CCKLEN--VPDTLGQVESLEELDISETAVRR-PPSSVFL-MKNLRTLSFSGCN---GPPSSASW 447 (784)
Q Consensus 385 ~L~Ls~----------c~~l~~--~~~~l~~l~~L~~L~l~~~~i~~-lp~~~~~-l~~L~~L~l~~~~---~l~~~~~~ 447 (784)
+|++++ |...+. ++.....+++|+.|+++.+.++. .+..+.. +++|+.|++.+|. .+...+.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~- 424 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL- 424 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC-
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH-
Confidence 999994 555442 22234458899999998887763 2334444 8999999998543 2222100
Q ss_pred ccccccccccCccchhhccCCCCCCCCCCCEEecCCCC--CCCCCCCcccCCCCCCCEEecCCCCCc--ccchhhhcCCC
Q 003945 448 HLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCG--LGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLN 523 (784)
Q Consensus 448 ~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~--l~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~ 523 (784)
...++..+.++++|++|++++|. +++..+......+++|++|+|++|+++ .++..+..+++
T Consensus 425 ---------------~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 425 ---------------DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp ---------------HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred ---------------HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 00011224568999999998765 553333333345899999999999987 46777789999
Q ss_pred CCeeccccccccCc--CCC---CCCCceEEEecCCc
Q 003945 524 LKELEMEDCKRLQF--LPQ---LPPNIIFVKVNGCS 554 (784)
Q Consensus 524 L~~L~L~~c~~L~~--i~~---lp~sL~~L~~~~C~ 554 (784)
|++|+|++|+ +.. ++. -.++|+.|++++|.
T Consensus 490 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 490 LQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 9999999998 431 221 24689999999998
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=9.3e-21 Score=216.71 Aligned_cols=237 Identities=21% Similarity=0.197 Sum_probs=157.4
Q ss_pred CCcceEEEcCccccCchhhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCC
Q 003945 120 TNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENL 199 (784)
Q Consensus 120 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~ 199 (784)
++|+.|++++|.+..-.. .+++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|+.|++++|.+.
T Consensus 61 ~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS
T ss_pred CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC
Confidence 689999999999875333 56799999999999999998 78999999999999999987 6789999999999866
Q ss_pred CCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccC
Q 003945 200 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 279 (784)
Q Consensus 200 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp 279 (784)
..++ .+++|++|++++| .+..+|. .+.+|+.|++++|.+.. +| ..+++|+.|++++|.++.+|
T Consensus 135 ~lp~---~l~~L~~L~Ls~N-~l~~l~~---------~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~ 197 (622)
T 3g06_A 135 SLPV---LPPGLQELSVSDN-QLASLPA---------LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLP 197 (622)
T ss_dssp CCCC---CCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCC
T ss_pred cCCC---CCCCCCEEECcCC-cCCCcCC---------ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCC
Confidence 5443 2589999999998 4555543 13556777887776554 44 44567777777777776666
Q ss_pred hhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCC
Q 003945 280 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGL 359 (784)
Q Consensus 280 ~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L 359 (784)
.. +++|+.|++.+| .+..+|.. +++|+.|+++ +|.++.+| ..+++|
T Consensus 198 ~~---~~~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls------------------------~N~L~~lp---~~l~~L 243 (622)
T 3g06_A 198 TL---PSELYKLWAYNN-RLTSLPAL---PSGLKELIVS------------------------GNRLTSLP---VLPSEL 243 (622)
T ss_dssp CC---CTTCCEEECCSS-CCSSCCCC---CTTCCEEECC------------------------SSCCSCCC---CCCTTC
T ss_pred Cc---cchhhEEECcCC-cccccCCC---CCCCCEEEcc------------------------CCccCcCC---CCCCcC
Confidence 43 345666666654 33344431 2445555554 44444444 233445
Q ss_pred CEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc
Q 003945 360 ELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 418 (784)
Q Consensus 360 ~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~ 418 (784)
+.|++++|.+. .+|. .+++|+.|++++|... .+|..+..+++|+.|++++|.++
T Consensus 244 ~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 244 KELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred cEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 55555555433 2333 3455555555555433 45555555666666666666555
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=216.49 Aligned_cols=269 Identities=19% Similarity=0.170 Sum_probs=157.4
Q ss_pred CccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccc-cccCCCCccEEEcCCCCCCCCCC-CCCCCCCccEEEecCC
Q 003945 142 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGC 219 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~ 219 (784)
...+.+.+++.++.+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.+....+ .+.++++|++|++++|
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 44557888888888887663 488888888888888766 68888888888888887766544 4778888888888876
Q ss_pred ccCcccCccccccCcccccCCccEEEecCCCCCcccc-ccccCCCcCcEEEecCC-CccccC-hhhhcccCCceeeccCc
Q 003945 220 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HVVGSMECLQELLLDGT-DIKELP-LSIEHLFGLVQLTLNDC 296 (784)
Q Consensus 220 ~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~L~l~~~-~i~~lp-~~i~~l~~L~~L~L~~~ 296 (784)
.+..++... +..+++|++|++++|.+....+ ..++.+++|++|++++| .+..++ ..+..+++|+.|++++|
T Consensus 111 -~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 111 -YLSNLSSSW-----FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp -CCSSCCHHH-----HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred -cCCcCCHhH-----hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 344444331 1224556667777766553322 35666677777777666 355443 45666666666666665
Q ss_pred cCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCcc----ccCCCCCCEEecCCCCCcc-
Q 003945 297 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS----IELLPGLELLNLNDCKNFA- 371 (784)
Q Consensus 297 ~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~----l~~l~~L~~L~L~~~~~~~- 371 (784)
......|..+..+++|++|++++|.........+..+++|+.|++++|.++.++.. ....+.++.++++++.+.+
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 54444455566666666666666554322222333456666666666666543321 1233445555555544432
Q ss_pred ---cccccccCCCCCCEEEccCCCCCCcCCCC-CCCCCCccEEecCCCccc
Q 003945 372 ---RVPSSINGLKSLKTLNLSGCCKLENVPDT-LGQVESLEELDISETAVR 418 (784)
Q Consensus 372 ---~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~-l~~l~~L~~L~l~~~~i~ 418 (784)
.+|..+..+++|+.|++++|... .+|.. ++.+++|+.|++++|.+.
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred chhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 23444444555555555554333 33333 244444444444444443
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=1.7e-24 Score=250.50 Aligned_cols=245 Identities=15% Similarity=0.085 Sum_probs=131.7
Q ss_pred HHHhcCCCcceEEEcCccccCch------------------hhcCcCccEEEEecCCCCCC-CCCC--CCCCeeEEEeCC
Q 003945 114 KAFSLMTNLGLLKINNVQLLEGL------------------EYLSNKLRLLDWHRYPLKSL-PSNL--QLDKIVEFKMCY 172 (784)
Q Consensus 114 ~~f~~~~~Lr~L~l~~~~l~~~~------------------~~l~~~Lr~L~l~~~~l~~l-p~~~--~l~~L~~L~L~~ 172 (784)
..+.++++|+.|+++++.....+ ....++|++|+++++.+... +..+ .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 45677888999998876422111 11224778888877765321 1122 467778888877
Q ss_pred C-Cccc--ccccccCCCCccEEEcCCCCCCCCC----CC-CCCCCCccEEEecCCccCcccCc-cccccCcccccCCccE
Q 003945 173 S-RIEE--LWKGIKHLNMLKVMKLSHSENLIKT----PD-FTEAPNLEELYLEGCTKLRKVHP-SLLLHNKLIFVESLKI 243 (784)
Q Consensus 173 ~-~i~~--l~~~~~~l~~L~~L~L~~~~~~~~~----~~-l~~l~~L~~L~L~~~~~l~~~~~-~i~~l~~L~~l~~L~~ 243 (784)
+ .+.. ++....++++|++|+|++|.+.... +. ...+++|++|++++|. ..+.. .+..+ ...+++|++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l--~~~~~~L~~ 215 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERL--VTRCPNLKS 215 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHH--HHHCTTCCE
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHH--HHhCCCCcE
Confidence 7 4443 4455556777888888777643321 12 2256677777777764 11110 11110 112466777
Q ss_pred EEecCCCCCccccccccCCCcCcEEEecCC-------CccccChhhhcccCCcee-eccCccCCCCCccccccccccCeE
Q 003945 244 LILSGCLKLRKFPHVVGSMECLQELLLDGT-------DIKELPLSIEHLFGLVQL-TLNDCKNLSSLPVAISSFQCLRNL 315 (784)
Q Consensus 244 L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~-------~i~~lp~~i~~l~~L~~L-~L~~~~~~~~lp~~l~~l~~L~~L 315 (784)
|++++|.....++..+..+++|++|+++.+ .+..++..+.++++|+.| .+.+ .....++..+..+++|++|
T Consensus 216 L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~-~~~~~l~~~~~~~~~L~~L 294 (594)
T 2p1m_B 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD-AVPAYLPAVYSVCSRLTTL 294 (594)
T ss_dssp EECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT-CCGGGGGGGHHHHTTCCEE
T ss_pred EecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc-cchhhHHHHHHhhCCCCEE
Confidence 777777555556666667777777774433 233455556666666666 3332 1123344433445666666
Q ss_pred eecCCCCCcc-CcccccCCCCCCEEeccCcCCc--ccCccccCCCCCCEEec
Q 003945 316 KLSGCSKLKK-FPQIVTTMEDLSELNLDGTSIT--EVPSSIELLPGLELLNL 364 (784)
Q Consensus 316 ~L~~~~~~~~-~~~~~~~l~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L 364 (784)
++++|..... +...+..+++|+.|++.++ +. .++.....+++|+.|++
T Consensus 295 ~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp ECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred EccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 6666652221 2223445566666666655 22 12222233555666655
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=6.5e-23 Score=216.61 Aligned_cols=246 Identities=22% Similarity=0.253 Sum_probs=182.9
Q ss_pred ccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccC-CCCCccccc-------cccccCeEeecCCCCCccCcccc
Q 003945 259 VGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKN-LSSLPVAIS-------SFQCLRNLKLSGCSKLKKFPQIV 330 (784)
Q Consensus 259 l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~-~~~lp~~l~-------~l~~L~~L~L~~~~~~~~~~~~~ 330 (784)
++.+.+|+.|+++++.+ .+|..+... |+.|+++++.. ...+|..+. .+++|++|++++|...+..|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 45556677777777777 777666554 77777776543 123444343 57788888888887776777655
Q ss_pred --cCCCCCCEEeccCcCCcccCccccCC-----CCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCc--CCCCC
Q 003945 331 --TTMEDLSELNLDGTSITEVPSSIELL-----PGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN--VPDTL 401 (784)
Q Consensus 331 --~~l~~L~~L~L~~~~i~~lp~~l~~l-----~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~--~~~~l 401 (784)
..+++|++|++++|.++.+|..+..+ ++|++|++++|.+.+..|..++.+++|++|++++|...+. ++..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 77888888888888888777666655 8888888888888777777888888888888888876654 23333
Q ss_pred --CCCCCccEEecCCCccccCCc---c-ccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCC
Q 003945 402 --GQVESLEELDISETAVRRPPS---S-VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRS 475 (784)
Q Consensus 402 --~~l~~L~~L~l~~~~i~~lp~---~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~ 475 (784)
+.+++|+.|++++|.++.++. . +..+++|+.|++++|......+ .+.+..+++
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------------~~~~~~l~~ 254 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG---------------------APSCDWPSQ 254 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC---------------------CSCCCCCTT
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc---------------------hhhhhhcCC
Confidence 778889999999998885442 2 2457899999999887322110 134556789
Q ss_pred CCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeecccccc
Q 003945 476 LTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 476 L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 533 (784)
|++|++++|.++ .+|..+. ++|++|+|++|+++.+|. +..+++|+.|++++|+
T Consensus 255 L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 255 LNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 999999999995 5787776 899999999999998887 8899999999999986
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=5.3e-21 Score=199.23 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=77.9
Q ss_pred EEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcC-
Q 003945 267 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS- 345 (784)
Q Consensus 267 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~- 345 (784)
.++.+++.++.+|..+ .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 4455555555555432 2345555555433222222334444555555555544443334444445555555555553
Q ss_pred Cccc-CccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCcc-
Q 003945 346 ITEV-PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS- 423 (784)
Q Consensus 346 i~~l-p~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~- 423 (784)
+..+ |..+..+++|+.|++++|.+.+..+..+..+++|++|++++|......+..++.+++|+.|++++|.++.+|..
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 4433 33344445555555555544444444444455555555555444433333344455555555555544444332
Q ss_pred ccccccccEEecCCC
Q 003945 424 VFLMKNLRTLSFSGC 438 (784)
Q Consensus 424 ~~~l~~L~~L~l~~~ 438 (784)
+..+++|+.|++++|
T Consensus 173 ~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQN 187 (285)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hcCccccCEEECCCC
Confidence 333444444444444
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=2.6e-21 Score=201.62 Aligned_cols=222 Identities=22% Similarity=0.268 Sum_probs=148.4
Q ss_pred cEEEEecCCCCCCCCCCCCCCeeEEEeCCCCccccc-ccccCCCCccEEEcCCCCCCCC-CCCCCCCCCccEEEecCCcc
Q 003945 144 RLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIK-TPDFTEAPNLEELYLEGCTK 221 (784)
Q Consensus 144 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~~~ 221 (784)
+.+++++..+..+|..+ .++|++|++++|.++.++ ..+..+++|++|++++|.+... +..+..+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 45666666666666544 456667777777666655 3466667777777776665544 23466667777777776644
Q ss_pred CcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChh-hhcccCCceeeccCccCCC
Q 003945 222 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLS 300 (784)
Q Consensus 222 l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~ 300 (784)
+..+++. .+..+++|++|++++|.+....+..+.++++|++|++++|.+..++.. +..+++|+.|++++|. +.
T Consensus 93 l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~ 166 (285)
T 1ozn_A 93 LRSVDPA-----TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-IS 166 (285)
T ss_dssp CCCCCTT-----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred ccccCHH-----HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-cc
Confidence 4444221 122345566677777776666667777777777777777777766654 6677777777777754 33
Q ss_pred CCcc-ccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCc-cccCCCCCCEEecCCCCCccc
Q 003945 301 SLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFAR 372 (784)
Q Consensus 301 ~lp~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~ 372 (784)
.+|. .+..+++|++|++++|......|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+...
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 4443 46677788888888877766667777778888888888888877764 377788888888888776543
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=9.7e-24 Score=244.14 Aligned_cols=268 Identities=18% Similarity=0.135 Sum_probs=185.8
Q ss_pred HHhcCCCcceEEEcCccccCc-hhh---cCcCccEEEEecC-CCCC--CCCCC-CCCCeeEEEeCCCCccc-----cccc
Q 003945 115 AFSLMTNLGLLKINNVQLLEG-LEY---LSNKLRLLDWHRY-PLKS--LPSNL-QLDKIVEFKMCYSRIEE-----LWKG 181 (784)
Q Consensus 115 ~f~~~~~Lr~L~l~~~~l~~~-~~~---l~~~Lr~L~l~~~-~l~~--lp~~~-~l~~L~~L~L~~~~i~~-----l~~~ 181 (784)
.+..+++|+.|+++++.+... +.. ..++|++|++.+| .++. ++... .+++|++|++++|.+.. ++..
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 345788999999999887642 222 2359999999998 4433 45444 78999999999998764 4444
Q ss_pred ccCCCCccEEEcCCCCCCCC---CCC-CCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCC------
Q 003945 182 IKHLNMLKVMKLSHSENLIK---TPD-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLK------ 251 (784)
Q Consensus 182 ~~~l~~L~~L~L~~~~~~~~---~~~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~------ 251 (784)
...+++|+.|++++|..... ++. +..+++|++|++++|..+..++..+.. +++|+.|+++.+..
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~------~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR------APQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH------CTTCSEEECSBCCCCCCHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc------CCcceEcccccccCccchhh
Confidence 56788999999999861111 111 245799999999999666665544433 56677799877643
Q ss_pred CccccccccCCCcCcEE-EecCCCccccChhhhcccCCceeeccCccCCCC--CccccccccccCeEeecCCCCCccCcc
Q 003945 252 LRKFPHVVGSMECLQEL-LLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS--LPVAISSFQCLRNLKLSGCSKLKKFPQ 328 (784)
Q Consensus 252 ~~~~~~~l~~l~~L~~L-~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~L~~~~~~~~~~~ 328 (784)
...++..+.++++|+.| .+.......++..+..+++|+.|++++|. +.. ++..+..+++|++|++++|.....++.
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~ 332 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH
Confidence 12345578899999999 56665566778777889999999999987 432 233356789999999999822223444
Q ss_pred cccCCCCCCEEeccC---------cCCcc--cCccccCCCCCCEEecCCCCCccccccccc-CCCCCCEEEcc
Q 003945 329 IVTTMEDLSELNLDG---------TSITE--VPSSIELLPGLELLNLNDCKNFARVPSSIN-GLKSLKTLNLS 389 (784)
Q Consensus 329 ~~~~l~~L~~L~L~~---------~~i~~--lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~-~l~~L~~L~Ls 389 (784)
....+++|++|++.+ +.++. +......+++|+.|.+..+.+....+..+. .+++|+.|+++
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 445689999999944 34431 222223478888887776666554444443 47888888888
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=5.7e-20 Score=203.96 Aligned_cols=244 Identities=20% Similarity=0.239 Sum_probs=160.7
Q ss_pred CeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCC-CCCCCCCCccEEEecCCccCcccCccccccCcccccCCcc
Q 003945 164 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 242 (784)
Q Consensus 164 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 242 (784)
....++.++..++.+|.++. ++++.|+|++|.+.... ..+.++++|++|+|++| .+..++.. .+..+++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~-----~~~~l~~L~ 115 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIG-----AFNGLANLN 115 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGG-----GGTTCSSCC
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChh-----hccCCccCC
Confidence 46678888888888888765 68888999888776554 45778888888888876 34433321 122244555
Q ss_pred EEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCC
Q 003945 243 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 322 (784)
Q Consensus 243 ~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 322 (784)
+|++++|.+....+..+..+++|++|++++|.+..++. ..+..+++|++|++++|+.
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-----------------------~~~~~l~~L~~L~l~~~~~ 172 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS-----------------------YAFNRIPSLRRLDLGELKR 172 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT-----------------------TTTTTCTTCCEEECCCCTT
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH-----------------------HHhhhCcccCEeCCCCCCC
Confidence 56666665554444455566666666666655554443 2344455555555555444
Q ss_pred CccCcc-cccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCC
Q 003945 323 LKKFPQ-IVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTL 401 (784)
Q Consensus 323 ~~~~~~-~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l 401 (784)
...++. .+..+++|++|++++|.++.+|. +..+++|+.|++++|.+.+..|..+.++++|+.|++++|......+..+
T Consensus 173 l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 173 LSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp CCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred cceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh
Confidence 443332 45566666666666666666663 5667777777777777766667777777777777777777776667777
Q ss_pred CCCCCccEEecCCCccccCCcc-ccccccccEEecCCCC
Q 003945 402 GQVESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGCN 439 (784)
Q Consensus 402 ~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 439 (784)
..+++|+.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 252 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 7778888888888887776654 4567888888888776
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=6.2e-20 Score=204.39 Aligned_cols=244 Identities=21% Similarity=0.238 Sum_probs=160.1
Q ss_pred CeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCC-CCCCCCCCccEEEecCCccCcccCccccccCcccccCCcc
Q 003945 164 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 242 (784)
Q Consensus 164 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 242 (784)
....++.++..++.+|.++. ++|++|+|++|.+.... ..+.++++|++|++++| .+..+++. .+..+++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~-----~~~~l~~L~ 126 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVG-----AFNGLASLN 126 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTT-----TTTTCTTCC
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChh-----hccCcccCC
Confidence 45678888888888887765 68899999988776654 35778888888888886 34433321 122345566
Q ss_pred EEEecCCCCCccccccccCCCcCcEEEecCCCccccCh-hhhcccCCceeeccCccCCCCCccccccccccCeEeecCCC
Q 003945 243 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS 321 (784)
Q Consensus 243 ~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 321 (784)
+|++++|.+....+..++.+++|++|++++|.+..+|. .+..+++|+.|++++|..++.++.
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~----------------- 189 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE----------------- 189 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-----------------
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh-----------------
Confidence 66666666655555556666666666666666655543 344444555555544443333332
Q ss_pred CCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCC
Q 003945 322 KLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTL 401 (784)
Q Consensus 322 ~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l 401 (784)
..+..+++|+.|++++|.++.+|. +..+++|+.|++++|.+.+..|..+.++++|+.|++++|......+..+
T Consensus 190 ------~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 190 ------GAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp ------TTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ------hhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh
Confidence 234555666666666666666553 5666777777777777766667777777777777777777766666777
Q ss_pred CCCCCccEEecCCCccccCCcc-ccccccccEEecCCCC
Q 003945 402 GQVESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGCN 439 (784)
Q Consensus 402 ~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 439 (784)
..+++|+.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 263 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 7777777777777777766643 4567778888887775
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.1e-21 Score=216.27 Aligned_cols=237 Identities=18% Similarity=0.174 Sum_probs=153.9
Q ss_pred cCcEEEecCCCccccC-hhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEecc
Q 003945 264 CLQELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 342 (784)
Q Consensus 264 ~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 342 (784)
+|++|++++|.+..++ ..+..+++|+.|++++|..... ++ +..+++|++|++++|.... ++ ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEECc
Confidence 4444444444444332 2344444444444444332221 11 4445555555555543221 11 12566666666
Q ss_pred CcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCC-CCCCccEEecCCCccccCC
Q 003945 343 GTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLG-QVESLEELDISETAVRRPP 421 (784)
Q Consensus 343 ~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~-~l~~L~~L~l~~~~i~~lp 421 (784)
+|.+..++.. .+++|+.|++++|.+.+..|..++.+++|+.|++++|...+..|..+. .+++|+.|++++|.++.+|
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 6666655542 356777777777777766666677777777777777777666666554 6777777888777777665
Q ss_pred ccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCC
Q 003945 422 SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL 501 (784)
Q Consensus 422 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L 501 (784)
.. ..+++|+.|++++|... .+|+.+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 186 ~~-~~l~~L~~L~Ls~N~l~-----------------------~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L 239 (487)
T 3oja_A 186 GQ-VVFAKLKTLDLSSNKLA-----------------------FMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNL 239 (487)
T ss_dssp CC-CCCTTCCEEECCSSCCC-----------------------EECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTC
T ss_pred cc-ccCCCCCEEECCCCCCC-----------------------CCCHhHcCCCCccEEEecCCcCc--ccchhhccCCCC
Confidence 43 35778888888877621 12455677888999999999885 488889999999
Q ss_pred CEEecCCCCCc--ccchhhhcCCCCCeecccccccc
Q 003945 502 NELYLSKNNFV--TLPASINSLLNLKELEMEDCKRL 535 (784)
Q Consensus 502 ~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L 535 (784)
+.|++++|.+. .+|..+..++.|+.|.+..+..+
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccc
Confidence 99999999998 78888899999999988755443
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=1.3e-21 Score=207.10 Aligned_cols=238 Identities=16% Similarity=0.072 Sum_probs=184.7
Q ss_pred cCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEee
Q 003945 238 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 317 (784)
Q Consensus 238 l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 317 (784)
+++|++|++++|.+....|..++.+++|++|++++|.+..++. +..+++|+.|++++|. +..++ ..++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEEC
Confidence 4566777777777776666777778888888888887776654 7777888888888764 33333 2578888888
Q ss_pred cCCCCCccCcccccCCCCCCEEeccCcCCcccCc-cccCCCCCCEEecCCCCCcccccccc-cCCCCCCEEEccCCCCCC
Q 003945 318 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSI-NGLKSLKTLNLSGCCKLE 395 (784)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~~-~~l~~L~~L~Ls~c~~l~ 395 (784)
++|......+. .+++|++|++++|.++.++. .+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|....
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 88766554433 36778899999998887654 67788899999999998887766665 468999999999987654
Q ss_pred cCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCC
Q 003945 396 NVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRS 475 (784)
Q Consensus 396 ~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~ 475 (784)
. +. ...+++|+.|++++|.++.+|+.+..+++|+.|++++|... .+|..+..+++
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-----------------------~l~~~~~~l~~ 238 (317)
T 3o53_A 184 V-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-----------------------LIEKALRFSQN 238 (317)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-----------------------EECTTCCCCTT
T ss_pred c-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-----------------------chhhHhhcCCC
Confidence 4 32 33488999999999999999988999999999999998721 23667888999
Q ss_pred CCEEecCCCCCCCCCCCcccCCCCCCCEEecCCC
Q 003945 476 LTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN 509 (784)
Q Consensus 476 L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n 509 (784)
|+.|++++|.+..+.+|..+..+++|+.|+++++
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 9999999999964567888889999999988754
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=3.3e-21 Score=203.43 Aligned_cols=250 Identities=20% Similarity=0.175 Sum_probs=192.6
Q ss_pred cCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCc-ccCcccc-ccCcccccCCccEEEecCCCCCccccccc-
Q 003945 183 KHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLR-KVHPSLL-LHNKLIFVESLKILILSGCLKLRKFPHVV- 259 (784)
Q Consensus 183 ~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~-~~~~~i~-~l~~L~~l~~L~~L~ls~~~~~~~~~~~l- 259 (784)
...++|+.|++++|.+ ..+..+... |++|++++|..-. .++..+. ..-....+++|++|++++|.+.+.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 4456677777777766 222223322 7777777653211 2222221 00011125678889999999888888876
Q ss_pred -cCCCcCcEEEecCCCccccChhhhcc-----cCCceeeccCccCCCCCccccccccccCeEeecCCCCCcc--Ccccc-
Q 003945 260 -GSMECLQELLLDGTDIKELPLSIEHL-----FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK--FPQIV- 330 (784)
Q Consensus 260 -~~l~~L~~L~l~~~~i~~lp~~i~~l-----~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~--~~~~~- 330 (784)
+.+++|++|++++|.++.+|..+..+ ++|++|++++|......|..+..+++|++|++++|...+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 89999999999999999888888887 8999999999876666667889999999999999886654 33344
Q ss_pred -cCCCCCCEEeccCcCCcccC---cc-ccCCCCCCEEecCCCCCccccc-ccccCCCCCCEEEccCCCCCCcCCCCCCCC
Q 003945 331 -TTMEDLSELNLDGTSITEVP---SS-IELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCKLENVPDTLGQV 404 (784)
Q Consensus 331 -~~l~~L~~L~L~~~~i~~lp---~~-l~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l 404 (784)
..+++|++|++++|.++.++ .. +..+++|+.|++++|.+.+..| ..+..+++|++|++++|... .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 78999999999999998543 22 4678999999999999888765 45667899999999998876 7888776
Q ss_pred CCccEEecCCCccccCCccccccccccEEecCCCC
Q 003945 405 ESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 439 (784)
Q Consensus 405 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 439 (784)
++|+.|++++|.++.+|. +..+++|+.|++++|+
T Consensus 274 ~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 899999999999999977 8899999999999987
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=6.9e-20 Score=205.24 Aligned_cols=222 Identities=16% Similarity=0.149 Sum_probs=164.9
Q ss_pred ccChhhhcc----cCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCcc
Q 003945 277 ELPLSIEHL----FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS 352 (784)
Q Consensus 277 ~lp~~i~~l----~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~ 352 (784)
.+|..+..+ ++|+.|++++|......|..+..+++|++|++++|......| +..+++|++|++++|.++.+|..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~ 98 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG 98 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC
Confidence 445554444 378888888876555556678888888888888887665544 77888888888888888876643
Q ss_pred ccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCcccc-CCcccc-ccccc
Q 003945 353 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVF-LMKNL 430 (784)
Q Consensus 353 l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~-lp~~~~-~l~~L 430 (784)
++|+.|++++|.+.+..+. .+++|+.|++++|...+..|..++.+++|+.|++++|.++. .|..+. .+++|
T Consensus 99 ----~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 99 ----PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp ----TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred ----CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 7888888888887765543 35788888888888877777778888888888888888875 344454 67888
Q ss_pred cEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCC
Q 003945 431 RTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 510 (784)
Q Consensus 431 ~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~ 510 (784)
+.|++++|.... .+....+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.
T Consensus 172 ~~L~Ls~N~l~~------------------------~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 172 EHLNLQYNFIYD------------------------VKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CEEECTTSCCCE------------------------EECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSC
T ss_pred cEEecCCCcccc------------------------ccccccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecCCc
Confidence 888888876211 122335778888888888875 366667788888888888888
Q ss_pred CcccchhhhcCCCCCeecccccc
Q 003945 511 FVTLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 511 l~~lp~~i~~l~~L~~L~L~~c~ 533 (784)
++.+|..+..+++|+.|++++|+
T Consensus 226 l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 226 LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCEECTTCCCCTTCCEEECTTCC
T ss_pred CcccchhhccCCCCCEEEcCCCC
Confidence 88888777778888888888776
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=2.4e-18 Score=179.12 Aligned_cols=174 Identities=22% Similarity=0.197 Sum_probs=97.0
Q ss_pred ccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccC
Q 003945 311 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 390 (784)
Q Consensus 311 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~ 390 (784)
+++.|++++|......+..+..+++|+.|++++|.++.++.. ..+++|+.|++++|.+.
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~-------------------- 90 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ-------------------- 90 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS--------------------
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC--------------------
Confidence 444444444444333344444555555555555555544432 34444444444444332
Q ss_pred CCCCCcCCCCCCCCCCccEEecCCCccccCC-ccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCC
Q 003945 391 CCKLENVPDTLGQVESLEELDISETAVRRPP-SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS 469 (784)
Q Consensus 391 c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 469 (784)
.+|..+..+++|+.|++++|.++.+| ..+..+++|+.|++++|.... ..+..
T Consensus 91 -----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~----------------------~~~~~ 143 (290)
T 1p9a_G 91 -----SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT----------------------LPPGL 143 (290)
T ss_dssp -----SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC----------------------CCTTT
T ss_pred -----cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc----------------------cChhh
Confidence 23333344444444444444444443 223444444444444443110 00223
Q ss_pred CCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeecccccc
Q 003945 470 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 470 l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 533 (784)
+..+++|+.|++++|++. ...+..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+
T Consensus 144 ~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 556778888888888875 333344677888999999999888888888888888888888886
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=3.2e-18 Score=178.22 Aligned_cols=203 Identities=22% Similarity=0.269 Sum_probs=153.4
Q ss_pred ccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCE
Q 003945 259 VGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 338 (784)
Q Consensus 259 l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 338 (784)
+++++++++++++++.++.+|..+. ++++.|++++|......+..+..+++|++|++++|..... +.. +.+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCE
Confidence 4566778888888888888887664 6788888888765544556688888899999988765543 322 68889999
Q ss_pred EeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc
Q 003945 339 LNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 418 (784)
Q Consensus 339 L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~ 418 (784)
|++++|.+..+|..+..+++|+.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|+.|++++|.++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999999999988888899999999988877666677778888888888887666555555667777777777777766
Q ss_pred cCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCC
Q 003945 419 RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNL 498 (784)
Q Consensus 419 ~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l 498 (784)
.+|.. .+..+++|++|++++|.+. .+|..+..+
T Consensus 162 ~l~~~---------------------------------------------~~~~l~~L~~L~L~~N~l~--~ip~~~~~~ 194 (290)
T 1p9a_G 162 ELPAG---------------------------------------------LLNGLENLDTLLLQENSLY--TIPKGFFGS 194 (290)
T ss_dssp CCCTT---------------------------------------------TTTTCTTCCEEECCSSCCC--CCCTTTTTT
T ss_pred ccCHH---------------------------------------------HhcCcCCCCEEECCCCcCC--ccChhhccc
Confidence 65432 2455667777777777774 577777778
Q ss_pred CCCCEEecCCCCCc
Q 003945 499 HSLNELYLSKNNFV 512 (784)
Q Consensus 499 ~~L~~L~L~~n~l~ 512 (784)
++|+.|+|++|.+.
T Consensus 195 ~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 195 HLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCSEEECCSCCBC
T ss_pred ccCCeEEeCCCCcc
Confidence 88888888888775
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=1.3e-18 Score=180.28 Aligned_cols=200 Identities=21% Similarity=0.205 Sum_probs=133.2
Q ss_pred cccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCc-cccCCCCCCEEecCCCCCcccccccccCCCCCCEEEc
Q 003945 310 QCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNL 388 (784)
Q Consensus 310 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L 388 (784)
++|++|++++|......+..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 356666666665554444556666667777777776665554 4666777777777777666665666677777777777
Q ss_pred cCCCCCCcCCCCCCCCCCccEEecCCCcccc--CCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhcc
Q 003945 389 SGCCKLENVPDTLGQVESLEELDISETAVRR--PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALM 466 (784)
Q Consensus 389 s~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 466 (784)
++|...+..+..++.+++|+.|++++|.++. +|..+..+++|+.|++++|..... .
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~----------------------~ 165 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----------------------Y 165 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE----------------------C
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC----------------------C
Confidence 7766655555566777777777777777765 566777777777777777752111 0
Q ss_pred CCCCCCCCCCC----EEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchh-hhcCCCCCeecccccc
Q 003945 467 LPSLSGLRSLT----KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 533 (784)
Q Consensus 467 ~~~l~~l~~L~----~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 533 (784)
+..+..+++|+ .|++++|.+. .++.......+|++|++++|+++.+|.. +..+++|+.|++++|+
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCC--EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred HHHhhhhhhccccceeeecCCCccc--ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 11233333333 7888888885 3555544556888999999888888765 4778888999888886
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=8.9e-18 Score=173.21 Aligned_cols=177 Identities=21% Similarity=0.254 Sum_probs=89.2
Q ss_pred ccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCcc-ccCCCCCCEEecCCCCCcccccccccCCCCCCEEEcc
Q 003945 311 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 389 (784)
Q Consensus 311 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls 389 (784)
+|++|++++|......+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 344444444433333333444444555555555555444433 2444555555555544443333334445555555555
Q ss_pred CCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCC
Q 003945 390 GCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS 469 (784)
Q Consensus 390 ~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 469 (784)
+|......+..++.+++|+.|++++|.++.+|.. .
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------------------------------------------~ 152 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG---------------------------------------------V 152 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------------------------------------T
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh---------------------------------------------H
Confidence 5444444344444455555555555544443322 2
Q ss_pred CCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchh-hhcCCCCCeecccccc
Q 003945 470 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 533 (784)
Q Consensus 470 l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 533 (784)
+..+++|++|++++|.+. ...+..+..+++|++|+|++|+++.+|.. +..+++|+.|++++|+
T Consensus 153 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 445556666666666654 23333456666666666666666666543 5556666666666664
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.3e-17 Score=172.01 Aligned_cols=201 Identities=20% Similarity=0.219 Sum_probs=147.9
Q ss_pred cCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccC
Q 003945 264 CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 343 (784)
Q Consensus 264 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 343 (784)
..+.++++++.++.+|..+. ++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45667777777777776554 5677788877653333334577788888888888776655555667888899999998
Q ss_pred cCCcccCcc-ccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCc
Q 003945 344 TSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS 422 (784)
Q Consensus 344 ~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~ 422 (784)
|.+..+|.. +..+++|+.|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.++.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 888877754 6788999999999988887777778889999999999987766555667888999999999888876653
Q ss_pred cccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCC
Q 003945 423 SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLN 502 (784)
Q Consensus 423 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~ 502 (784)
. .+..+++|++|++++|.+. ...+..+..+++|+
T Consensus 175 ~---------------------------------------------~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 175 G---------------------------------------------AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLK 208 (270)
T ss_dssp T---------------------------------------------TTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCC
T ss_pred h---------------------------------------------HhccCCCcCEEECCCCcCC-cCCHHHhccccCCC
Confidence 2 2445566666777777664 33334567778888
Q ss_pred EEecCCCCCc
Q 003945 503 ELYLSKNNFV 512 (784)
Q Consensus 503 ~L~L~~n~l~ 512 (784)
.|+|++|.+.
T Consensus 209 ~L~l~~N~~~ 218 (270)
T 2o6q_A 209 MLQLQENPWD 218 (270)
T ss_dssp EEECCSSCBC
T ss_pred EEEecCCCee
Confidence 8888888765
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=5.1e-18 Score=175.70 Aligned_cols=219 Identities=17% Similarity=0.175 Sum_probs=106.0
Q ss_pred EEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccc-cccCCCCccEEEcCCCCCCCCCC-CCCCCCCccEEEecCCccC
Q 003945 145 LLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKL 222 (784)
Q Consensus 145 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l 222 (784)
..+..+..+..+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.+....+ .+..+++|++|++++|. +
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-C
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-c
Confidence 4455566667777655 2567788888888777655 57777777777777776554443 46666666666666652 2
Q ss_pred cccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCC
Q 003945 223 RKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL 302 (784)
Q Consensus 223 ~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l 302 (784)
..+++. .+..+++|++|++++|.+....+..++.+++|++|++++|.+..+ .+
T Consensus 89 ~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l 141 (276)
T 2z62_A 89 QSLALG-----AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KL 141 (276)
T ss_dssp CEECTT-----TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CC
T ss_pred CccChh-----hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee----------------------cC
Confidence 222211 111233344444444444433333344444444444444443320 12
Q ss_pred ccccccccccCeEeecCCCCCccCcccccCCCCCC----EEeccCcCCcccCccccCCCCCCEEecCCCCCccccccccc
Q 003945 303 PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLS----ELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSIN 378 (784)
Q Consensus 303 p~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~----~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~ 378 (784)
|..+..+++|++|++++|......+..+..+++|+ .|++++|.+..++.......+|+.|++++|.+.+..+..+.
T Consensus 142 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTT
T ss_pred chhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhc
Confidence 33333444444444444433333333333333333 45555555554444333333444444444443332222233
Q ss_pred CCCCCCEEEccCCC
Q 003945 379 GLKSLKTLNLSGCC 392 (784)
Q Consensus 379 ~l~~L~~L~Ls~c~ 392 (784)
.+++|+.|++++|+
T Consensus 222 ~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 222 RLTSLQKIWLHTNP 235 (276)
T ss_dssp TCCSCCEEECCSSC
T ss_pred ccccccEEEccCCc
Confidence 44444444444433
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=8.2e-19 Score=181.17 Aligned_cols=152 Identities=20% Similarity=0.266 Sum_probs=87.5
Q ss_pred hcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCcc-ccCCCCCCE
Q 003945 283 EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLEL 361 (784)
Q Consensus 283 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~ 361 (784)
..+++|+.|++.+|. +..++. +..+++|++|++++|.... + ..+..+++|++|++++|.++.++.. +..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 334444445544432 333332 4445555555555554332 2 2455666666666666666655543 466677777
Q ss_pred EecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCcc-ccccccccEEecCCC
Q 003945 362 LNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGC 438 (784)
Q Consensus 362 L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 438 (784)
|++++|.+.+..+..+..+++|++|++++|...+..+..++.+++|+.|++++|.++.++.. +..+++|+.|++++|
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 77777766655555567777777777777766555555567777888888877777665432 233344444444433
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=3e-18 Score=173.37 Aligned_cols=205 Identities=18% Similarity=0.159 Sum_probs=115.3
Q ss_pred CCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcC-CcccCc-cccCCCCCCEEecCC-CCCcccccc
Q 003945 299 LSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS-ITEVPS-SIELLPGLELLNLND-CKNFARVPS 375 (784)
Q Consensus 299 ~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~lp~-~l~~l~~L~~L~L~~-~~~~~~l~~ 375 (784)
++.+|. + .++|++|++++|......+..+..+++|+.|++++|. ++.++. .+..+++|+.|++++ |.+....+.
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 444554 2 2355666666655444444455556666666666664 555553 455566666666665 444433334
Q ss_pred cccCCCCCCEEEccCCCCCCcCCCCCCCCCCcc---EEecCCC-ccccCCcc-cccccccc-EEecCCCCCCCCCCCccc
Q 003945 376 SINGLKSLKTLNLSGCCKLENVPDTLGQVESLE---ELDISET-AVRRPPSS-VFLMKNLR-TLSFSGCNGPPSSASWHL 449 (784)
Q Consensus 376 ~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~---~L~l~~~-~i~~lp~~-~~~l~~L~-~L~l~~~~~l~~~~~~~~ 449 (784)
.+.++++|++|++++|...+ +|. +..+++|+ .|++++| .++.+|.. +..+++|+ .|++++|...
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-------- 169 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-------- 169 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--------
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--------
Confidence 55566666666666655433 444 55555555 6666666 66655543 45566666 6666655411
Q ss_pred ccccccccCccchhhccCCCCCCCCCCCEEecCCCC-CCCCCCCcccCCC-CCCCEEecCCCCCcccchhhhcCCCCCee
Q 003945 450 HLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCG-LGEGAIPSDIGNL-HSLNELYLSKNNFVTLPASINSLLNLKEL 527 (784)
Q Consensus 450 ~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-l~~~~~p~~l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L 527 (784)
.++......++|++|++++|. +. ...+..+..+ ++|+.|++++|+++.+|.. .+++|+.|
T Consensus 170 ---------------~i~~~~~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L 231 (239)
T 2xwt_C 170 ---------------SVQGYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKEL 231 (239)
T ss_dssp ---------------EECTTTTTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEE
T ss_pred ---------------ccCHhhcCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh--HhccCcee
Confidence 112222222567777777774 54 2334456667 7777777777777777754 56677777
Q ss_pred ccccccc
Q 003945 528 EMEDCKR 534 (784)
Q Consensus 528 ~L~~c~~ 534 (784)
+++++..
T Consensus 232 ~l~~~~~ 238 (239)
T 2xwt_C 232 IARNTWT 238 (239)
T ss_dssp ECTTC--
T ss_pred eccCccC
Confidence 7776643
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=5.4e-18 Score=175.01 Aligned_cols=220 Identities=15% Similarity=0.157 Sum_probs=152.6
Q ss_pred CCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCC
Q 003945 287 GLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND 366 (784)
Q Consensus 287 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~ 366 (784)
++..+++..+. +.... ....+++|+.|+++++... .+ ..+..+++|+.|++++|.+..++ .+..+++|+.|++++
T Consensus 20 ~l~~l~l~~~~-~~~~~-~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKS-VTDAV-TQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSC-TTSEE-CHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcc-ccccc-ccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 44445555532 22222 2556888999999887643 33 34677888888888888888764 677888888888888
Q ss_pred CCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCcc-ccccccccEEecCCCCCCCCCC
Q 003945 367 CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGCNGPPSSA 445 (784)
Q Consensus 367 ~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~ 445 (784)
|.+.+..+..+..+++|++|++++|...+..+..++.+++|+.|++++|.++.++.. +..+++|+.|++++|....
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 171 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--- 171 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc---
Confidence 887766666678888888888888877766666678888888888888888877654 4667788888887775211
Q ss_pred CcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCC
Q 003945 446 SWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLK 525 (784)
Q Consensus 446 ~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~ 525 (784)
..+..++.+++|++|++++|.+. +..+..++.+++|+.|++++|.+. +.+++|+
T Consensus 172 -------------------~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~ 225 (272)
T 3rfs_A 172 -------------------LPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIR 225 (272)
T ss_dssp -------------------CCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC------CCTTTTH
T ss_pred -------------------cCHHHhcCCccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCcc------ccCcHHH
Confidence 11333567777788888777775 444555677777777877777665 2345677
Q ss_pred eeccccccccCcCCC
Q 003945 526 ELEMEDCKRLQFLPQ 540 (784)
Q Consensus 526 ~L~L~~c~~L~~i~~ 540 (784)
.|++..|..-..+|.
T Consensus 226 ~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 226 YLSEWINKHSGVVRN 240 (272)
T ss_dssp HHHHHHHHTGGGBBC
T ss_pred HHHHHHHhCCCcccC
Confidence 777777665555543
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=5.9e-20 Score=200.22 Aligned_cols=239 Identities=15% Similarity=0.140 Sum_probs=132.4
Q ss_pred ccChhhhcccCCceeeccCccCCCC----CccccccccccCeEeecCCCC---CccCccc-------ccCCCCCCEEecc
Q 003945 277 ELPLSIEHLFGLVQLTLNDCKNLSS----LPVAISSFQCLRNLKLSGCSK---LKKFPQI-------VTTMEDLSELNLD 342 (784)
Q Consensus 277 ~lp~~i~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~---~~~~~~~-------~~~l~~L~~L~L~ 342 (784)
.++..+..+++|+.|++++|..... ++..+..+++|++|++++|.. ...+|.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4444444444555555544432222 122233455555555555421 1122222 2455666666666
Q ss_pred CcCCcc-----cCccccCCCCCCEEecCCCCCcccccc----cccCC---------CCCCEEEccCCCCC-CcCC---CC
Q 003945 343 GTSITE-----VPSSIELLPGLELLNLNDCKNFARVPS----SINGL---------KSLKTLNLSGCCKL-ENVP---DT 400 (784)
Q Consensus 343 ~~~i~~-----lp~~l~~l~~L~~L~L~~~~~~~~l~~----~~~~l---------~~L~~L~Ls~c~~l-~~~~---~~ 400 (784)
+|.+.. +|..+..+++|+.|++++|.+....+. .+..+ ++|++|++++|... ..++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 665553 444555666666666666665432222 22222 66666666666554 2233 24
Q ss_pred CCCCCCccEEecCCCccc------cCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCC
Q 003945 401 LGQVESLEELDISETAVR------RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLR 474 (784)
Q Consensus 401 l~~l~~L~~L~l~~~~i~------~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~ 474 (784)
+..+++|+.|++++|.++ -.+..+..+++|+.|++++|.... .....++..+..++
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~------------------~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH------------------LGSSALAIALKSWP 244 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH------------------HHHHHHHHHGGGCT
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc------------------HHHHHHHHHHccCC
Confidence 445666777777777665 223356667777777777765100 00122344566677
Q ss_pred CCCEEecCCCCCCCC---CCCccc--CCCCCCCEEecCCCCCcc-----cchhh-hcCCCCCeecccccc
Q 003945 475 SLTKLDLSDCGLGEG---AIPSDI--GNLHSLNELYLSKNNFVT-----LPASI-NSLLNLKELEMEDCK 533 (784)
Q Consensus 475 ~L~~L~Ls~~~l~~~---~~p~~l--~~l~~L~~L~L~~n~l~~-----lp~~i-~~l~~L~~L~L~~c~ 533 (784)
+|++|+|++|.+.+. .++..+ +.+++|+.|+|++|.++. +|..+ .++++|+.|++++|+
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 788888888877531 134555 347888888888888886 77777 557888888888875
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=2e-19 Score=192.03 Aligned_cols=202 Identities=20% Similarity=0.252 Sum_probs=94.1
Q ss_pred ccccCeEeecCCCCCcc-CcccccCCCCCCEEeccCcCCc-ccCccccCCCCCCEEecCCCC-Ccc-cccccccCCCCCC
Q 003945 309 FQCLRNLKLSGCSKLKK-FPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCK-NFA-RVPSSINGLKSLK 384 (784)
Q Consensus 309 l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~-~~~-~l~~~~~~l~~L~ 384 (784)
+++|++|++++|..... ++..+..+++|++|++++|.+. ..+..+..+++|++|++++|. +.. .++..+.++++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 44444444444432222 3334444444444444444443 233334444555555555542 222 1333344455555
Q ss_pred EEEccCC-CCCCc-CCCCCCCCC-CccEEecCCCc--c--ccCCccccccccccEEecCCCCCCCCCCCccccccccccc
Q 003945 385 TLNLSGC-CKLEN-VPDTLGQVE-SLEELDISETA--V--RRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMG 457 (784)
Q Consensus 385 ~L~Ls~c-~~l~~-~~~~l~~l~-~L~~L~l~~~~--i--~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~ 457 (784)
+|++++| ..... ++..+..++ +|+.|++++|. + ..+|..+..+++|+.|++++|.....
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-------------- 237 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-------------- 237 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG--------------
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH--------------
Confidence 5555555 22221 333344455 55555555553 2 23444455566666666666552211
Q ss_pred CccchhhccCCCCCCCCCCCEEecCCCC-CCCCCCCcccCCCCCCCEEecCCCCCcccch-hhhcCC-CCCeeccccccc
Q 003945 458 KSSCLVALMLPSLSGLRSLTKLDLSDCG-LGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLL-NLKELEMEDCKR 534 (784)
Q Consensus 458 ~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~-~L~~L~L~~c~~ 534 (784)
..+..+..+++|++|++++|. +.+ .....++.+++|+.|++++| +++ .+..+. +|+.|++++|..
T Consensus 238 -------~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 238 -------DCFQEFFQLNYLQHLSLSRCYDIIP-ETLLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp -------GGGGGGGGCTTCCEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCCCS
T ss_pred -------HHHHHHhCCCCCCEeeCCCCCCCCH-HHHHHHhcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecccC
Confidence 112334555666777776663 221 11124566777777777776 222 233332 355666665553
Q ss_pred cC
Q 003945 535 LQ 536 (784)
Q Consensus 535 L~ 536 (784)
-.
T Consensus 306 ~~ 307 (336)
T 2ast_B 306 TT 307 (336)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=4.6e-17 Score=174.56 Aligned_cols=235 Identities=20% Similarity=0.252 Sum_probs=138.3
Q ss_pred cEEEEecCCCCCCCCCCCCCCeeEEEeCCCCccccccc-ccCCCCccEEEcCCCCCCCCCC--CCCCCCCccEEEecCCc
Q 003945 144 RLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGCT 220 (784)
Q Consensus 144 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~L~~~~ 220 (784)
++++.+++.++++|..+ .+++++|+|++|+|+.+|.+ +.++++|++|+|++|.+...++ .+.++++|+++...++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 56777888888888766 46788888888888888764 7888888888888888766543 36778877765555545
Q ss_pred cCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecC-CCccccChh-hhccc-CCceeeccCcc
Q 003945 221 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDG-TDIKELPLS-IEHLF-GLVQLTLNDCK 297 (784)
Q Consensus 221 ~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~-~~i~~lp~~-i~~l~-~L~~L~L~~~~ 297 (784)
.+..+++.. +..+++|++|++++|.+....+..+....++..|++.+ +.+..++.. +..+. .++.|++++|
T Consensus 91 ~l~~l~~~~-----f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N- 164 (350)
T 4ay9_X 91 NLLYINPEA-----FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN- 164 (350)
T ss_dssp TCCEECTTS-----BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-
T ss_pred cccccCchh-----hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-
Confidence 566655432 22245566666666666555555555555666666644 445555432 33332 4555666653
Q ss_pred CCCCCccccccccccCeEeecCCCCCccCcc-cccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCccccccc
Q 003945 298 NLSSLPVAISSFQCLRNLKLSGCSKLKKFPQ-IVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 376 (784)
Q Consensus 298 ~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~ 376 (784)
.++.+|.......+|+.|.+.+++.++.+|. .+..+++|+.|++++|.++.+|.. .+.+|+.|.+.++...+.+|.
T Consensus 165 ~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-
T ss_pred cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-
Confidence 3444544444455566666655555555443 345556666666666666655542 234444444444444444442
Q ss_pred ccCCCCCCEEEc
Q 003945 377 INGLKSLKTLNL 388 (784)
Q Consensus 377 ~~~l~~L~~L~L 388 (784)
+..+++|+.+++
T Consensus 242 l~~l~~L~~l~l 253 (350)
T 4ay9_X 242 LEKLVALMEASL 253 (350)
T ss_dssp TTTCCSCCEEEC
T ss_pred chhCcChhhCcC
Confidence 334444444444
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=3.3e-17 Score=165.68 Aligned_cols=196 Identities=15% Similarity=0.210 Sum_probs=105.2
Q ss_pred cCcEEEecCCCccccCh-hhhcccCCceeeccCccCCCCCcc-ccccccccCeEeecC-CCCCccCcccccCCCCCCEEe
Q 003945 264 CLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSG-CSKLKKFPQIVTTMEDLSELN 340 (784)
Q Consensus 264 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~ 340 (784)
+|++|++++|.++.+|. .+..+++|+.|++++|..++.++. .+..+++|++|++++ +......+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555443 344455555555554433333332 344455555555554 322222223444444455555
Q ss_pred ccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCC---EEEccCCCCCCcCC-CCCCCCCCcc-EEecCCC
Q 003945 341 LDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLK---TLNLSGCCKLENVP-DTLGQVESLE-ELDISET 415 (784)
Q Consensus 341 L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~---~L~Ls~c~~l~~~~-~~l~~l~~L~-~L~l~~~ 415 (784)
+++|.++.+|. +..+++|+ +|++++|..++.+| ..+..+++|+ .|++++|
T Consensus 112 l~~n~l~~lp~-------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 112 IFNTGLKMFPD-------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEECCCSCCC-------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred CCCCCCccccc-------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 55444444443 33444444 55555552233332 3455666666 6666666
Q ss_pred ccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCC-CCCCEEecCCCCCCCCCCCcc
Q 003945 416 AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGL-RSLTKLDLSDCGLGEGAIPSD 494 (784)
Q Consensus 416 ~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~Ls~~~l~~~~~p~~ 494 (784)
.++.+|......++|+.|++++|..+.. ..+..+..+ ++|++|++++|++. .+|..
T Consensus 167 ~l~~i~~~~~~~~~L~~L~L~~n~~l~~---------------------i~~~~~~~l~~~L~~L~l~~N~l~--~l~~~ 223 (239)
T 2xwt_C 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTV---------------------IDKDAFGGVYSGPSLLDVSQTSVT--ALPSK 223 (239)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCTTCCE---------------------ECTTTTTTCSBCCSEEECTTCCCC--CCCCT
T ss_pred CCcccCHhhcCCCCCCEEEcCCCCCccc---------------------CCHHHhhccccCCcEEECCCCccc--cCChh
Confidence 6666666555556777777777642211 113346667 78888888888885 35554
Q ss_pred cCCCCCCCEEecCCC
Q 003945 495 IGNLHSLNELYLSKN 509 (784)
Q Consensus 495 l~~l~~L~~L~L~~n 509 (784)
.+++|+.|+++++
T Consensus 224 --~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 --GLEHLKELIARNT 236 (239)
T ss_dssp --TCTTCSEEECTTC
T ss_pred --HhccCceeeccCc
Confidence 6788888888875
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=175.21 Aligned_cols=226 Identities=20% Similarity=0.165 Sum_probs=179.8
Q ss_pred CCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccc--cCCCcCcEEEecCCCcccc-C----
Q 003945 207 EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV--GSMECLQELLLDGTDIKEL-P---- 279 (784)
Q Consensus 207 ~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l--~~l~~L~~L~l~~~~i~~l-p---- 279 (784)
....++.|.+.++.... ..+..+.....+++|++|++++|.+.+..|..+ +.+++|++|++++|.+... +
T Consensus 62 ~~~~l~~l~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPA---QLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp SSCCCCEEEECSCCCBH---HHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred hhcceeEEEEeCCcCCH---HHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH
Confidence 34457888887763211 111111122234668999999999999998888 9999999999999999853 2
Q ss_pred hhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCcc--C--cccccCCCCCCEEeccCcCCcccCcc---
Q 003945 280 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK--F--PQIVTTMEDLSELNLDGTSITEVPSS--- 352 (784)
Q Consensus 280 ~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~--~--~~~~~~l~~L~~L~L~~~~i~~lp~~--- 352 (784)
..+..+++|+.|++++|......|..+..+++|++|++++|...+. + +..++.+++|++|++++|.++.++..
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 218 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA 218 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH
Confidence 3345789999999999877666667788999999999999986542 2 23346889999999999999866652
Q ss_pred -ccCCCCCCEEecCCCCCcccccccccCC---CCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccc
Q 003945 353 -IELLPGLELLNLNDCKNFARVPSSINGL---KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMK 428 (784)
Q Consensus 353 -l~~l~~L~~L~L~~~~~~~~l~~~~~~l---~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~ 428 (784)
++.+++|++|++++|.+.+..|..+..+ ++|++|++++|... .+|..+. ++|+.|++++|.++.+|. ...++
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~ 294 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELP 294 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCC
Confidence 5788999999999999988878777776 69999999998776 7787764 799999999999999876 67899
Q ss_pred cccEEecCCCC
Q 003945 429 NLRTLSFSGCN 439 (784)
Q Consensus 429 ~L~~L~l~~~~ 439 (784)
+|+.|++++|+
T Consensus 295 ~L~~L~L~~N~ 305 (310)
T 4glp_A 295 EVDNLTLDGNP 305 (310)
T ss_dssp CCSCEECSSTT
T ss_pred CccEEECcCCC
Confidence 99999999987
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=1.8e-18 Score=184.72 Aligned_cols=219 Identities=17% Similarity=0.193 Sum_probs=118.1
Q ss_pred eeEEEeCCCCcccccccccCC--CCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcc-cCccccccCcccccCCc
Q 003945 165 IVEFKMCYSRIEELWKGIKHL--NMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRK-VHPSLLLHNKLIFVESL 241 (784)
Q Consensus 165 L~~L~L~~~~i~~l~~~~~~l--~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~-~~~~i~~l~~L~~l~~L 241 (784)
++.++++++.+. +..+..+ ++++.|+++++.+...++.+..+++|++|++++|..... ++.. +..+++|
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~------~~~~~~L 120 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI------LSQCSKL 120 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH------HTTBCCC
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH------HhhCCCC
Confidence 344444444443 2334444 566666666666555555566666777777766632111 2221 2224556
Q ss_pred cEEEecCCCCCccccccccCCCcCcEEEecCC-Ccc--ccChhhhcccCCceeeccCccCCCC--Ccccccccc-ccCeE
Q 003945 242 KILILSGCLKLRKFPHVVGSMECLQELLLDGT-DIK--ELPLSIEHLFGLVQLTLNDCKNLSS--LPVAISSFQ-CLRNL 315 (784)
Q Consensus 242 ~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~-~i~--~lp~~i~~l~~L~~L~L~~~~~~~~--lp~~l~~l~-~L~~L 315 (784)
++|++++|.+....+..++.+++|++|+++++ .++ .++..+..+++|+.|++++|..+.. ++..+..++ +|++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 66666666665556666666666666666666 454 3555566666666666666533332 344455566 66666
Q ss_pred eecCCC--CC-ccCcccccCCCCCCEEeccCcC-Cc-ccCccccCCCCCCEEecCCCCC-cccccccccCCCCCCEEEcc
Q 003945 316 KLSGCS--KL-KKFPQIVTTMEDLSELNLDGTS-IT-EVPSSIELLPGLELLNLNDCKN-FARVPSSINGLKSLKTLNLS 389 (784)
Q Consensus 316 ~L~~~~--~~-~~~~~~~~~l~~L~~L~L~~~~-i~-~lp~~l~~l~~L~~L~L~~~~~-~~~l~~~~~~l~~L~~L~Ls 389 (784)
++++|. .. ..++..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|.. .......+..+++|+.|+++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 666652 22 2344455555666666666665 33 3344455556666666666531 11111234555666666666
Q ss_pred CC
Q 003945 390 GC 391 (784)
Q Consensus 390 ~c 391 (784)
+|
T Consensus 281 ~~ 282 (336)
T 2ast_B 281 GI 282 (336)
T ss_dssp TS
T ss_pred Cc
Confidence 55
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=3.2e-19 Score=194.37 Aligned_cols=257 Identities=14% Similarity=0.143 Sum_probs=127.2
Q ss_pred CeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCC-----CCCCCCCCccEEEecCCc--cCc-ccCcccccc-Cc
Q 003945 164 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKT-----PDFTEAPNLEELYLEGCT--KLR-KVHPSLLLH-NK 234 (784)
Q Consensus 164 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~-----~~l~~l~~L~~L~L~~~~--~l~-~~~~~i~~l-~~ 234 (784)
.|++..+....+..++..+..+++|++|+|++|.+.... ..+..+++|++|++++|. .+. .+|..+..+ ..
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 344444444555556666777777777777777654431 235667777777777752 111 223222111 11
Q ss_pred ccccCCccEEEecCCCCCc----cccccccCCCcCcEEEecCCCccc-----cChhhhcc---------cCCceeeccCc
Q 003945 235 LIFVESLKILILSGCLKLR----KFPHVVGSMECLQELLLDGTDIKE-----LPLSIEHL---------FGLVQLTLNDC 296 (784)
Q Consensus 235 L~~l~~L~~L~ls~~~~~~----~~~~~l~~l~~L~~L~l~~~~i~~-----lp~~i~~l---------~~L~~L~L~~~ 296 (784)
+..+++|++|++++|.+.. .+|..+..+++|++|++++|.+.. ++..+..+ ++|+.|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 2335666777777776665 356666667777777777776642 22333333 55555555554
Q ss_pred cCC-CCCc---cccccccccCeEeecCCCCCccC-cccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCc-
Q 003945 297 KNL-SSLP---VAISSFQCLRNLKLSGCSKLKKF-PQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNF- 370 (784)
Q Consensus 297 ~~~-~~lp---~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~- 370 (784)
... ..++ ..+..+++|++|++++|.....- .. -.+..+..+++|+.|+|++|.+.
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~-------------------l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH-------------------LLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH-------------------HHHTTGGGCTTCCEEECCSSCCHH
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH-------------------HHHHHhhcCCCccEEECcCCCCCc
Confidence 332 1222 22334445555555554333110 00 11223444444555555444442
Q ss_pred ---ccccccccCCCCCCEEEccCCCCCCc----CCCCC--CCCCCccEEecCCCcccc-----CCccc-cccccccEEec
Q 003945 371 ---ARVPSSINGLKSLKTLNLSGCCKLEN----VPDTL--GQVESLEELDISETAVRR-----PPSSV-FLMKNLRTLSF 435 (784)
Q Consensus 371 ---~~l~~~~~~l~~L~~L~Ls~c~~l~~----~~~~l--~~l~~L~~L~l~~~~i~~-----lp~~~-~~l~~L~~L~l 435 (784)
..+|..+..+++|++|++++|..... ++..+ +.+++|+.|++++|.++. +|..+ .++++|+.|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 33444444445555555555443332 22333 224555555555555554 44444 33555555555
Q ss_pred CCCC
Q 003945 436 SGCN 439 (784)
Q Consensus 436 ~~~~ 439 (784)
++|.
T Consensus 311 ~~N~ 314 (386)
T 2ca6_A 311 NGNR 314 (386)
T ss_dssp TTSB
T ss_pred cCCc
Confidence 5554
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=176.35 Aligned_cols=197 Identities=22% Similarity=0.259 Sum_probs=126.2
Q ss_pred cccCeEeecCCCCCccCcccc--cCCCCCCEEeccCcCCccc-C----ccccCCCCCCEEecCCCCCcccccccccCCCC
Q 003945 310 QCLRNLKLSGCSKLKKFPQIV--TTMEDLSELNLDGTSITEV-P----SSIELLPGLELLNLNDCKNFARVPSSINGLKS 382 (784)
Q Consensus 310 ~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~L~~~~i~~l-p----~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~ 382 (784)
++|++|++++|...+..|..+ ..+++|++|++++|.+... + ..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555544444444444 4455555555555555421 1 12234566666666666665555566666677
Q ss_pred CCEEEccCCCCCCc--C--CCCCCCCCCccEEecCCCccccCCcc----ccccccccEEecCCCCCCCCCCCcccccccc
Q 003945 383 LKTLNLSGCCKLEN--V--PDTLGQVESLEELDISETAVRRPPSS----VFLMKNLRTLSFSGCNGPPSSASWHLHLPFN 454 (784)
Q Consensus 383 L~~L~Ls~c~~l~~--~--~~~l~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~ 454 (784)
|++|++++|...+. + +..++.+++|++|++++|.++.++.. +..+++|++|++++|....
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~------------ 238 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA------------ 238 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC------------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc------------
Confidence 77777777665432 1 22335677778888888877655542 3567888888888877222
Q ss_pred cccCccchhhccCCCCCCC---CCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeecccc
Q 003945 455 LMGKSSCLVALMLPSLSGL---RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMED 531 (784)
Q Consensus 455 ~~~~~~~~~~~~~~~l~~l---~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~ 531 (784)
..|+.+..+ ++|++|++++|.+. .+|..+. ++|++|+|++|+++.+|. +..+++|+.|++++
T Consensus 239 ----------~~p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 239 ----------TVNPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp ----------CCCSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSS
T ss_pred ----------cchhhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcC
Confidence 123334444 68999999999885 5777664 789999999999998875 67889999999998
Q ss_pred cc
Q 003945 532 CK 533 (784)
Q Consensus 532 c~ 533 (784)
|+
T Consensus 304 N~ 305 (310)
T 4glp_A 304 NP 305 (310)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=4.2e-17 Score=171.41 Aligned_cols=189 Identities=18% Similarity=0.235 Sum_probs=103.4
Q ss_pred CccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCcc
Q 003945 142 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK 221 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 221 (784)
+|++|+++++.+..+|....+++|++|++++|.+..++. +..+++|++|++++|.+.. ++.+..+++|++|++++|.
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~- 118 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQ- 118 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSC-
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-chhhcCCCCCCEEECCCCC-
Confidence 677777777777777643377778888888887777766 7777788888887776443 4566777777777777762
Q ss_pred CcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCC
Q 003945 222 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS 301 (784)
Q Consensus 222 l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~ 301 (784)
+..++. +..+++|++|++++|.+....+ ++.+++|++|++++|.++.++. +..+++|+.|++++|. +..
T Consensus 119 l~~~~~-------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~ 187 (308)
T 1h6u_A 119 ITDVTP-------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISD 187 (308)
T ss_dssp CCCCGG-------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCC
T ss_pred CCCchh-------hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCc
Confidence 333221 2334455555555554443222 4455555555555555554443 4444555555554432 223
Q ss_pred CccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCc
Q 003945 302 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT 347 (784)
Q Consensus 302 lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 347 (784)
++. +..+++|++|++++|...... .+..+++|+.|++++|.++
T Consensus 188 ~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 ISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred Chh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 332 333444444444444332221 1333444444444444443
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=4.5e-17 Score=171.19 Aligned_cols=191 Identities=23% Similarity=0.315 Sum_probs=137.1
Q ss_pred ccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEE
Q 003945 307 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTL 386 (784)
Q Consensus 307 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 386 (784)
..+++|++|++++|... .++ .+..+++|+.|++++|.+..++. +..+++|+.|++++|.+.+ ++ .+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEE
Confidence 34566666666665433 233 35566677777777777776665 6777777777777776543 23 46677777777
Q ss_pred EccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhcc
Q 003945 387 NLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALM 466 (784)
Q Consensus 387 ~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 466 (784)
++++|...+ ++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.... +
T Consensus 113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-----------------------~ 166 (308)
T 1h6u_A 113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-----------------------L 166 (308)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-----------------------C
T ss_pred ECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-----------------------C
Confidence 777776544 332 6777888888888888887766 7778888888888876221 1
Q ss_pred CCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeecccccc
Q 003945 467 LPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 467 ~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 533 (784)
++ +..+++|+.|++++|.+.+ ++. +..+++|++|++++|++..+++ +..+++|+.|++++|+
T Consensus 167 ~~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 167 TP-LANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp GG-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred hh-hcCCCCCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 22 6778899999999998853 443 7888999999999999998884 8889999999999987
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=1.4e-16 Score=170.78 Aligned_cols=223 Identities=17% Similarity=0.203 Sum_probs=143.3
Q ss_pred cEEEecCCCccccChhhhcccCCceeeccCccCCCCCcc-ccccccccCeEeecCCCCCccCc-ccccCCCCCCE-Eecc
Q 003945 266 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFP-QIVTTMEDLSE-LNLD 342 (784)
Q Consensus 266 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~-L~L~ 342 (784)
++++.++++++++|..+ .++++.|+|++| .++.+|. .+.++++|++|+|++|...+.++ ..+.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666666777777655 356777777764 3555554 46677777777777776655544 35566766654 4455
Q ss_pred CcCCcccC-ccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCC-CCCCC-CCccEEecCCCcccc
Q 003945 343 GTSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQV-ESLEELDISETAVRR 419 (784)
Q Consensus 343 ~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~-~l~~l-~~L~~L~l~~~~i~~ 419 (784)
+|.++.++ ..+..+++|+.|++++|.+....+..+....++..|++.++..+..++. .+..+ ..++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 67777664 4567788888888888776655555555666777888877766666654 34444 457888888888887
Q ss_pred CCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCC-cccCCC
Q 003945 420 PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP-SDIGNL 498 (784)
Q Consensus 420 lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p-~~l~~l 498 (784)
+|...+...+|+.|.+.++..+ ..+| ..++.+
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l-----------------------------------------------~~i~~~~f~~l 201 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNL-----------------------------------------------EELPNDVFHGA 201 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTC-----------------------------------------------CCCCTTTTTTE
T ss_pred CChhhccccchhHHhhccCCcc-----------------------------------------------cCCCHHHhccC
Confidence 7776666666666666554422 2233 335666
Q ss_pred CCCCEEecCCCCCcccchhhhcCCCCCeeccccccccCcCCC
Q 003945 499 HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQ 540 (784)
Q Consensus 499 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~i~~ 540 (784)
++|++|+|++|+++.+|.. .+.+|+.|.+.+|..++.+|.
T Consensus 202 ~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 202 SGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp ECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred cccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC
Confidence 6677777777777766652 355666666666666666654
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=1.4e-18 Score=187.33 Aligned_cols=251 Identities=13% Similarity=0.057 Sum_probs=163.5
Q ss_pred EEecCCCCCccccccccCCCcCcEEEecCCCccccC-----hhhhccc-CCceeeccCccCCCCCccccccc-----ccc
Q 003945 244 LILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP-----LSIEHLF-GLVQLTLNDCKNLSSLPVAISSF-----QCL 312 (784)
Q Consensus 244 L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp-----~~i~~l~-~L~~L~L~~~~~~~~lp~~l~~l-----~~L 312 (784)
+.++.+.+.+.+|..+....+|++|++++|.++..+ ..+..++ +|+.|++++|......+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 567777777777777777777888888888887666 4566777 78888888875555445545544 788
Q ss_pred CeEeecCCCCCccCccc----ccCC-CCCCEEeccCcCCcccCc-----cccC-CCCCCEEecCCCCCccc----ccccc
Q 003945 313 RNLKLSGCSKLKKFPQI----VTTM-EDLSELNLDGTSITEVPS-----SIEL-LPGLELLNLNDCKNFAR----VPSSI 377 (784)
Q Consensus 313 ~~L~L~~~~~~~~~~~~----~~~l-~~L~~L~L~~~~i~~lp~-----~l~~-l~~L~~L~L~~~~~~~~----l~~~~ 377 (784)
++|++++|......+.. +..+ ++|++|++++|.++..+. .+.. .++|++|++++|.+... ++..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888766555443 3344 788888888888875543 2344 35888888888876643 33444
Q ss_pred cCCC-CCCEEEccCCCCCCcCCCC----CCCC-CCccEEecCCCcccc-----CCccccc-cccccEEecCCCCCCCCCC
Q 003945 378 NGLK-SLKTLNLSGCCKLENVPDT----LGQV-ESLEELDISETAVRR-----PPSSVFL-MKNLRTLSFSGCNGPPSSA 445 (784)
Q Consensus 378 ~~l~-~L~~L~Ls~c~~l~~~~~~----l~~l-~~L~~L~l~~~~i~~-----lp~~~~~-l~~L~~L~l~~~~~l~~~~ 445 (784)
..++ +|++|++++|......+.. +... ++|+.|++++|.++. ++..+.. .++|+.|++++|......
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~- 241 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS- 241 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC-
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH-
Confidence 5555 8888888887765544432 2334 478888888888775 5555555 347888888877622110
Q ss_pred CcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCC------CCCCcccCCCCCCCEEecCCCCCc
Q 003945 446 SWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGE------GAIPSDIGNLHSLNELYLSKNNFV 512 (784)
Q Consensus 446 ~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~------~~~p~~l~~l~~L~~L~L~~n~l~ 512 (784)
...+...+..+++|++|++++|.+.+ ..++..+..+++|+.|++++|++.
T Consensus 242 -----------------~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 242 -----------------LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp -----------------HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred -----------------HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 00111234566778888888776321 112334566777777888877766
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=2.6e-16 Score=160.28 Aligned_cols=173 Identities=21% Similarity=0.261 Sum_probs=115.1
Q ss_pred CCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCC
Q 003945 336 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 415 (784)
Q Consensus 336 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~ 415 (784)
.++++++++.++.+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|...+..+..+..+++|+.|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4456666666666665443 46666777666666665656666777777777776666655566666777777777777
Q ss_pred ccccCCc-cccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcc
Q 003945 416 AVRRPPS-SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 494 (784)
Q Consensus 416 ~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~ 494 (784)
.++.+|. .+..+++|++|++++|.... ..+..+..+++|++|++++|.+. +..+..
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~ 150 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKS----------------------LPSGVFDRLTKLKELRLNTNQLQ-SIPAGA 150 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCC----------------------CCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCC----------------------cChhHhccCCcccEEECcCCcCC-ccCHHH
Confidence 7776654 34566777777777665211 11233567778888888888775 333446
Q ss_pred cCCCCCCCEEecCCCCCcccch-hhhcCCCCCeecccccc
Q 003945 495 IGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 533 (784)
Q Consensus 495 l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 533 (784)
++.+++|++|+|++|+++.+|. .+..+++|+.|++++|+
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 7788888888888888887665 56778888888888876
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=1.1e-15 Score=155.54 Aligned_cols=174 Identities=17% Similarity=0.204 Sum_probs=118.6
Q ss_pred cCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccC
Q 003945 264 CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 343 (784)
Q Consensus 264 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 343 (784)
..++++++++.++.+|..+. ++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34556666666666665554 4666777766554444444566677777777777766666666667777777777777
Q ss_pred cCCcccCc-cccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCc
Q 003945 344 TSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS 422 (784)
Q Consensus 344 ~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~ 422 (784)
|.++.+|. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+..++.+++|+.|++++|.++.++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 77776653 35677777777777776665555556777777777777776655545567777778888888887777665
Q ss_pred -cccccccccEEecCCCC
Q 003945 423 -SVFLMKNLRTLSFSGCN 439 (784)
Q Consensus 423 -~~~~l~~L~~L~l~~~~ 439 (784)
.+..+++|+.|++++|+
T Consensus 173 ~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTTCTTCCEEECCSCC
T ss_pred HHHhCCCCCCEEEeeCCc
Confidence 56667788888887776
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=2.8e-17 Score=177.13 Aligned_cols=249 Identities=16% Similarity=0.119 Sum_probs=158.0
Q ss_pred EEEecCCCcccc-ChhhhcccCCceeeccCccCCCCCc----ccccccc-ccCeEeecCCCCCccCcccccCC-----CC
Q 003945 267 ELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSLP----VAISSFQ-CLRNLKLSGCSKLKKFPQIVTTM-----ED 335 (784)
Q Consensus 267 ~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp----~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~l-----~~ 335 (784)
.+.++.+.++.. |..+...++|+.|++++|......+ ..+..++ +|++|++++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 356777887754 4444445569999999876444333 4566777 89999999887766656555543 88
Q ss_pred CCEEeccCcCCcccCcc-----ccCC-CCCCEEecCCCCCccccccc----ccC-CCCCCEEEccCCCCCCc----CCCC
Q 003945 336 LSELNLDGTSITEVPSS-----IELL-PGLELLNLNDCKNFARVPSS----ING-LKSLKTLNLSGCCKLEN----VPDT 400 (784)
Q Consensus 336 L~~L~L~~~~i~~lp~~-----l~~l-~~L~~L~L~~~~~~~~l~~~----~~~-l~~L~~L~Ls~c~~l~~----~~~~ 400 (784)
|++|++++|.++..+.. +..+ ++|+.|++++|.+....+.. +.. .++|++|++++|..... ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 89999999888754432 4555 78888888888876554433 233 25888888888876543 2333
Q ss_pred CCCCC-CccEEecCCCccccCCc-----ccccc-ccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCC-
Q 003945 401 LGQVE-SLEELDISETAVRRPPS-----SVFLM-KNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSG- 472 (784)
Q Consensus 401 l~~l~-~L~~L~l~~~~i~~lp~-----~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~- 472 (784)
+..++ +|+.|++++|.++.... .+..+ ++|+.|++++|..... ....++..+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~------------------~~~~l~~~l~~~ 223 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK------------------SYAELAYIFSSI 223 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS------------------CHHHHHHHHHHS
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh------------------HHHHHHHHHhcC
Confidence 34444 78888888888875442 23334 4788888887762110 00111222333
Q ss_pred CCCCCEEecCCCCCCCCCC---CcccCCCCCCCEEecCCCCCc--------ccchhhhcCCCCCeecccccc
Q 003945 473 LRSLTKLDLSDCGLGEGAI---PSDIGNLHSLNELYLSKNNFV--------TLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 473 l~~L~~L~Ls~~~l~~~~~---p~~l~~l~~L~~L~L~~n~l~--------~lp~~i~~l~~L~~L~L~~c~ 533 (784)
.++|++|+|++|.+.+... ...+..+++|+.|+|++|.+. .++..+..+++|+.|++++|+
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3478888888887754211 234566777888888887733 333445566677777777775
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=2.8e-15 Score=169.19 Aligned_cols=190 Identities=18% Similarity=0.224 Sum_probs=131.8
Q ss_pred CCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCC
Q 003945 287 GLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND 366 (784)
Q Consensus 287 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~ 366 (784)
+|+.|++++|. +..+|..+ +++|++|++++|... .+| ..+++|+.|++++|.++.+|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 78888888754 55577655 477888888887655 555 456788888888888888777 544 788888888
Q ss_pred CCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCC
Q 003945 367 CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSAS 446 (784)
Q Consensus 367 ~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~ 446 (784)
|.+.+ +|. .+++|+.|++++|...+ +|. .+++|+.|++++|.++.+|. +. ++|+.|++++|... .
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~--- 194 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-S--- 194 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-S---
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-c---
Confidence 87665 555 57788888888876554 555 46778888888888887777 44 78888888877622 1
Q ss_pred cccccccccccCccchhhccCCCCCC-----CCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCc-ccchhhhc
Q 003945 447 WHLHLPFNLMGKSSCLVALMLPSLSG-----LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINS 520 (784)
Q Consensus 447 ~~~~~~l~~~~~~~~~~~~~~~~l~~-----l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~ 520 (784)
+|. +.. .+.|+.|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..
T Consensus 195 -------------------lp~-~~~~L~~~~~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 -------------------LPA-VPVRNHHSEETEIFFRCRENRIT--HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -------------------CCC-CC--------CCEEEECCSSCCC--CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred -------------------hhh-HHHhhhcccccceEEecCCCcce--ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 122 222 122378888888775 47777777888888888888776 56666655
Q ss_pred CCC
Q 003945 521 LLN 523 (784)
Q Consensus 521 l~~ 523 (784)
++.
T Consensus 253 l~~ 255 (571)
T 3cvr_A 253 QTA 255 (571)
T ss_dssp HHH
T ss_pred hhc
Confidence 443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=1.4e-15 Score=171.68 Aligned_cols=182 Identities=17% Similarity=0.244 Sum_probs=100.4
Q ss_pred CcceEEEcCccccCchhhcCcCccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCC
Q 003945 121 NLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLI 200 (784)
Q Consensus 121 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~ 200 (784)
+|+.|+++++.+.+-...++++|++|++++|.+..+| -.+++|++|++++|.++.+|. +.. +|++|+|++|.+..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC
Confidence 6777777777665533334456777777777776666 335667777777777666666 443 67777777666554
Q ss_pred CCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccCh
Q 003945 201 KTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL 280 (784)
Q Consensus 201 ~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~ 280 (784)
+|. .+++|++|++++| .+..+|. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.++.+|.
T Consensus 135 -lp~--~l~~L~~L~Ls~N-~l~~lp~---------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 135 -LPE--LPALLEYINADNN-QLTMLPE---------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp -CCC--CCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred -CCC--cCccccEEeCCCC-ccCcCCC---------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh
Confidence 333 5666666666665 3333432 13455666666665544 444 33 566666666666665555
Q ss_pred hhhcccCC-------ceeeccCccCCCCCccccccccccCeEeecCCCCCccCcc
Q 003945 281 SIEHLFGL-------VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQ 328 (784)
Q Consensus 281 ~i~~l~~L-------~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~ 328 (784)
+.. +| +.|++++| .+..+|..+..+++|+.|++++|...+..|.
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 332 34 44555443 2334444444444444444444444443333
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=3.4e-15 Score=155.40 Aligned_cols=171 Identities=22% Similarity=0.337 Sum_probs=105.4
Q ss_pred cccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCE
Q 003945 306 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKT 385 (784)
Q Consensus 306 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 385 (784)
...+++|+.|++++|.... ++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|.+..
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-------------- 104 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-------------- 104 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--------------
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC--------------
Confidence 3445666666666654322 22 24455555555555555555444 4455555555555544322
Q ss_pred EEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhc
Q 003945 386 LNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVAL 465 (784)
Q Consensus 386 L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 465 (784)
++ .+..+++|+.|++++|.++.+ +.+..+++|+.|++++|....
T Consensus 105 -----------~~-~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~----------------------- 148 (291)
T 1h6t_A 105 -----------LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITD----------------------- 148 (291)
T ss_dssp -----------GG-GGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-----------------------
T ss_pred -----------Ch-hhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCc-----------------------
Confidence 22 244555566666666655554 345566666677666665211
Q ss_pred cCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeeccccccc
Q 003945 466 MLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 534 (784)
Q Consensus 466 ~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 534 (784)
.+.+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|+.
T Consensus 149 -~~~l~~l~~L~~L~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 149 -ITVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp -CGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred -chhhccCCCCCEEEccCCcccc--chh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 1235667788888888888852 433 8888899999999998888874 88889999999998863
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=3.4e-15 Score=155.38 Aligned_cols=191 Identities=21% Similarity=0.274 Sum_probs=135.2
Q ss_pred CcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCc
Q 003945 265 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 344 (784)
Q Consensus 265 L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 344 (784)
+..+.+..+.+..+. ....+++|+.|++++| .+..++. +..+++|++|++++|......+ +..+++|+.|++++|
T Consensus 26 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCccccc-chhhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 334445555555432 3567899999999986 5666665 8889999999999987665444 889999999999999
Q ss_pred CCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccc
Q 003945 345 SITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSV 424 (784)
Q Consensus 345 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~ 424 (784)
.++.++. +..+++|+.|++++|.+... ..+..+++|+.|++++|. ++.+ +.+
T Consensus 101 ~l~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~------------------------l~~~-~~l 152 (291)
T 1h6t_A 101 KVKDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNK------------------------ITDI-TVL 152 (291)
T ss_dssp CCCCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSC------------------------CCCC-GGG
T ss_pred cCCCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCc------------------------CCcc-hhh
Confidence 9998765 78888888888888876542 235555556666655554 3333 334
Q ss_pred cccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEE
Q 003945 425 FLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNEL 504 (784)
Q Consensus 425 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L 504 (784)
..+++|+.|++++|.... .++ +..+++|++|++++|.+.+ ++ .+..+++|+.|
T Consensus 153 ~~l~~L~~L~L~~N~l~~-----------------------~~~-l~~l~~L~~L~L~~N~i~~--l~-~l~~l~~L~~L 205 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQISD-----------------------IVP-LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVL 205 (291)
T ss_dssp GGCTTCSEEECCSSCCCC-----------------------CGG-GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEE
T ss_pred ccCCCCCEEEccCCcccc-----------------------chh-hcCCCccCEEECCCCcCCC--Ch-hhccCCCCCEE
Confidence 455555555555554111 011 5677888888888888853 54 48889999999
Q ss_pred ecCCCCCcccc
Q 003945 505 YLSKNNFVTLP 515 (784)
Q Consensus 505 ~L~~n~l~~lp 515 (784)
++++|.+...|
T Consensus 206 ~l~~n~i~~~~ 216 (291)
T 1h6t_A 206 ELFSQECLNKP 216 (291)
T ss_dssp EEEEEEEECCC
T ss_pred ECcCCcccCCc
Confidence 99999888665
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=1.2e-14 Score=165.92 Aligned_cols=175 Identities=21% Similarity=0.318 Sum_probs=121.3
Q ss_pred cccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCE
Q 003945 306 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKT 385 (784)
Q Consensus 306 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 385 (784)
+..+++|+.|++++|... .++ .+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.+.. ++ .+..+++|+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 456788888888876543 333 46778888888888888887766 7778888888888876554 33 5677778888
Q ss_pred EEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhc
Q 003945 386 LNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVAL 465 (784)
Q Consensus 386 L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 465 (784)
|+|++|.... + ..+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.....
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~---------------------- 168 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI---------------------- 168 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC----------------------
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc----------------------
Confidence 8887776554 2 3466777777777777777776 5666777777777777652111
Q ss_pred cCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccc
Q 003945 466 MLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP 515 (784)
Q Consensus 466 ~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp 515 (784)
++ +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+...|
T Consensus 169 -~~-l~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 169 -VP-LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -GG-GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred -hh-hccCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 12 5667777777777777752 33 4677777777777777776544
No 102
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=3.5e-17 Score=185.82 Aligned_cols=216 Identities=15% Similarity=0.104 Sum_probs=136.2
Q ss_pred cCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEE
Q 003945 260 GSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 339 (784)
Q Consensus 260 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 339 (784)
..+++|+.|++++|.++.+|..++++++|+.|++++|..+..+|..+ ..+...+..|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccC
Confidence 67889999999999999999999999999999987654222222110 0111223344445555555555
Q ss_pred e-ccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc
Q 003945 340 N-LDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 418 (784)
Q Consensus 340 ~-L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~ 418 (784)
+ ++.+.+..++ .+.+.+|.+.. ++. ..|+.|++++|...+ +|. ++.+++|+.|++++|.++
T Consensus 415 ~~l~~n~~~~L~----------~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 415 DPMRAAYLDDLR----------SKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp CGGGHHHHHHHH----------HHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred cchhhcccchhh----------hhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence 4 3333322221 11122221111 111 135666666654433 554 666777777777777777
Q ss_pred cCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCC-CcccCC
Q 003945 419 RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI-PSDIGN 497 (784)
Q Consensus 419 ~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~-p~~l~~ 497 (784)
.+|..+..+++|+.|++++|.... +| .++.+++|++|+|++|.+. +.. |..++.
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~-----------------------lp-~l~~l~~L~~L~Ls~N~l~-~~~~p~~l~~ 531 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN-----------------------VD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVS 531 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC-----------------------CG-GGTTCSSCCEEECCSSCCC-SSSTTGGGGG
T ss_pred ccchhhhcCCCCCEEECCCCCCCC-----------------------Cc-ccCCCCCCcEEECCCCCCC-CCCCcHHHhc
Confidence 777777777777777777765211 13 5777888888888888886 333 888999
Q ss_pred CCCCCEEecCCCCCcccchhh----hcCCCCCeecc
Q 003945 498 LHSLNELYLSKNNFVTLPASI----NSLLNLKELEM 529 (784)
Q Consensus 498 l~~L~~L~L~~n~l~~lp~~i----~~l~~L~~L~L 529 (784)
+++|+.|+|++|.++.+|+.+ ..+++|+.|++
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999999998776543 44788888753
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=3.3e-14 Score=140.19 Aligned_cols=171 Identities=19% Similarity=0.163 Sum_probs=94.8
Q ss_pred EEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCcc
Q 003945 338 ELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAV 417 (784)
Q Consensus 338 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i 417 (784)
.++.+++.++.+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|...+..+..+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3444445555555332 24555566665555444444455566666666666554433334455566666666666666
Q ss_pred ccCCcc-ccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccC
Q 003945 418 RRPPSS-VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 496 (784)
Q Consensus 418 ~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~ 496 (784)
+.+|.. +..+++|+.|++++|.... ..+..+..+++|++|++++|.+. +..+..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~ 145 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQS----------------------LPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCC----------------------CCTTTTTTCTTCCEEECCSSCCS-CCCTTTTT
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcc----------------------cCHhHhccCCcCCEEECCCCccc-eeCHHHhc
Confidence 655543 3456666666666654111 01223556677777777777664 33334466
Q ss_pred CCCCCCEEecCCCCCcccchhhhcCCCCCeeccccccccCcCC
Q 003945 497 NLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 539 (784)
Q Consensus 497 ~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~i~ 539 (784)
.+++|+.|++++|.+. ..+++|+.|+++.|..-..+|
T Consensus 146 ~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBB
T ss_pred cCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceee
Confidence 6777777777777554 234566777777666555554
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.9e-14 Score=141.89 Aligned_cols=46 Identities=20% Similarity=0.074 Sum_probs=30.7
Q ss_pred CCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCc-ccchhhhcCCC
Q 003945 470 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLN 523 (784)
Q Consensus 470 l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~ 523 (784)
+..+++|++|++++|.+. +.+++|+.|+++.|+++ .+|+.++.++.
T Consensus 144 ~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred hccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 455667777777777553 34567777777777777 77777666554
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=5e-14 Score=140.00 Aligned_cols=149 Identities=22% Similarity=0.326 Sum_probs=93.2
Q ss_pred CEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCc
Q 003945 337 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 416 (784)
Q Consensus 337 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~ 416 (784)
+.++++++.++.+|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456677777777776543 677788887777666555567777778888887777766667777777777777777777
Q ss_pred cccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccC
Q 003945 417 VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 496 (784)
Q Consensus 417 i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~ 496 (784)
++.+|... +..+++|++|+|++|.+. +..|..+.
T Consensus 92 l~~l~~~~---------------------------------------------f~~l~~L~~L~L~~N~l~-~~~~~~~~ 125 (220)
T 2v9t_B 92 ITELPKSL---------------------------------------------FEGLFSLQLLLLNANKIN-CLRVDAFQ 125 (220)
T ss_dssp CCCCCTTT---------------------------------------------TTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred CCccCHhH---------------------------------------------ccCCCCCCEEECCCCCCC-EeCHHHcC
Confidence 77665432 234444555555555543 33344555
Q ss_pred CCCCCCEEecCCCCCcccch-hhhcCCCCCeecccccc
Q 003945 497 NLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 533 (784)
Q Consensus 497 ~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 533 (784)
.+++|+.|+|++|+++.++. .+..+++|+.|++++|+
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 55555555555555555443 24555555555555554
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=3.9e-14 Score=138.32 Aligned_cols=150 Identities=18% Similarity=0.283 Sum_probs=87.6
Q ss_pred cccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcc-cCccccCCCCCCEE
Q 003945 284 HLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE-VPSSIELLPGLELL 362 (784)
Q Consensus 284 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~l~~l~~L~~L 362 (784)
.+++|+.|++++| .+..+| .+..+++|++|++++|. ...+ ..+..+++|++|++++|.++. .+..+..+++|+.|
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3344444444442 222333 24444445555554441 1111 234455556666666665553 45556666666666
Q ss_pred ecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCC
Q 003945 363 NLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 439 (784)
Q Consensus 363 ~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 439 (784)
++++|.+....+..+..+++|++|++++|...+.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 666666666566666677777777777766455555 4666777777777777777766 66777788888887776
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.5e-14 Score=139.66 Aligned_cols=154 Identities=18% Similarity=0.267 Sum_probs=125.7
Q ss_pred cCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEE
Q 003945 260 GSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 339 (784)
Q Consensus 260 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 339 (784)
+.+++|+.|+++++.+..+| .+..+++|+.|++++| .+..++ .+..+++|++|++++|......+..++.+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 56778888888888888888 7888889999999887 555555 47789999999999988777778888899999999
Q ss_pred eccCcCCcc-cCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc
Q 003945 340 NLDGTSITE-VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 418 (784)
Q Consensus 340 ~L~~~~i~~-lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~ 418 (784)
++++|.++. .|..+..+++|+.|++++|...+.+| .+..+++|+.|++++|...+ ++ .+..+++|+.|++++|.+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 999999984 66778899999999999998666666 58889999999999987654 44 6788999999999999875
Q ss_pred c
Q 003945 419 R 419 (784)
Q Consensus 419 ~ 419 (784)
.
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=1.1e-13 Score=138.45 Aligned_cols=148 Identities=21% Similarity=0.270 Sum_probs=90.9
Q ss_pred CEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCc
Q 003945 337 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 416 (784)
Q Consensus 337 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~ 416 (784)
+.++.+++.+..+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456666777777776443 667777777776666666666666666666666665533333445556666666666666
Q ss_pred cccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccC
Q 003945 417 VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 496 (784)
Q Consensus 417 i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~ 496 (784)
++.++.. .+..+++|++|++++|.+. .+|..+.
T Consensus 100 l~~l~~~---------------------------------------------~~~~l~~L~~L~Ls~N~l~--~lp~~~~ 132 (229)
T 3e6j_A 100 LTVLPSA---------------------------------------------VFDRLVHLKELFMCCNKLT--ELPRGIE 132 (229)
T ss_dssp CCCCCTT---------------------------------------------TTTTCTTCCEEECCSSCCC--SCCTTGG
T ss_pred CCccChh---------------------------------------------HhCcchhhCeEeccCCccc--ccCcccc
Confidence 5554432 2445566666666666663 4666666
Q ss_pred CCCCCCEEecCCCCCcccch-hhhcCCCCCeecccccc
Q 003945 497 NLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 533 (784)
Q Consensus 497 ~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 533 (784)
.+++|+.|+|++|+++.+|. .+..+++|+.|++++|+
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 66666777776666666653 35566666666666664
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=4.5e-14 Score=161.24 Aligned_cols=164 Identities=18% Similarity=0.229 Sum_probs=100.1
Q ss_pred CccEEEEecCCCCCCCCCCCCCCeeEEEeCCCCcccccccccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCcc
Q 003945 142 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK 221 (784)
Q Consensus 142 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 221 (784)
+|+.|+++++.+..+|....+++|++|+|++|.+..++. +..+++|+.|+|++|.+. .++.+..+++|++|+|++|.
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~- 120 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSLSLEHNG- 120 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-CCTTSTTCTTCCEEECTTSC-
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC-CChhhccCCCCCEEEecCCC-
Confidence 677777777777777753377888888888888877765 777888888888887654 35567777788888887763
Q ss_pred CcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCC
Q 003945 222 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS 301 (784)
Q Consensus 222 l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~ 301 (784)
+..+ ..+..+++|+.|++++|.+... ..++.+++|+.|++++|.+..++. +..+++|+.|+|++| .+..
T Consensus 121 l~~l-------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~ 189 (605)
T 1m9s_A 121 ISDI-------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISD 189 (605)
T ss_dssp CCCC-------GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCB
T ss_pred CCCC-------ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC-CCCC
Confidence 3322 1233455566666666655443 445555666666666555555444 555555555555554 2223
Q ss_pred CccccccccccCeEeecCC
Q 003945 302 LPVAISSFQCLRNLKLSGC 320 (784)
Q Consensus 302 lp~~l~~l~~L~~L~L~~~ 320 (784)
+|. +..+++|+.|+|++|
T Consensus 190 l~~-l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 190 LRA-LAGLKNLDVLELFSQ 207 (605)
T ss_dssp CGG-GTTCTTCSEEECCSE
T ss_pred ChH-HccCCCCCEEEccCC
Confidence 332 444444444444444
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=7.7e-14 Score=150.04 Aligned_cols=170 Identities=21% Similarity=0.197 Sum_probs=105.9
Q ss_pred EEeccCcCCcccCccccCCCCCCEEecCCCCCccccccccc-CCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCc
Q 003945 338 ELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSIN-GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 416 (784)
Q Consensus 338 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~-~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~ 416 (784)
.++++++.++.+|..+. +.++.|+|++|.+.+..+..+. ++++|+.|++++|......+..+..+++|+.|++++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45555555555554332 3456666666655544444444 56666666666665555445556666666666666666
Q ss_pred cccCCc-cccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCccc
Q 003945 417 VRRPPS-SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 495 (784)
Q Consensus 417 i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l 495 (784)
++.++. .+..+++|+.|++++|.. ....+..+..+++|++|+|++|.+. .+|..+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i----------------------~~~~~~~~~~l~~L~~L~L~~N~l~--~l~~~~ 155 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHI----------------------VVVDRNAFEDMAQLQKLYLSQNQIS--RFPVEL 155 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCC----------------------CEECTTTTTTCTTCCEEECCSSCCC--SCCGGG
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcc----------------------cEECHHHhCCcccCCEEECCCCcCC--eeCHHH
Confidence 665544 355566666666666651 1112455777888888888888885 355543
Q ss_pred ----CCCCCCCEEecCCCCCcccch-hhhcCCC--CCeecccccc
Q 003945 496 ----GNLHSLNELYLSKNNFVTLPA-SINSLLN--LKELEMEDCK 533 (784)
Q Consensus 496 ----~~l~~L~~L~L~~n~l~~lp~-~i~~l~~--L~~L~L~~c~ 533 (784)
..+++|+.|+|++|+++.+|. .+..++. |+.|+|++|+
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 568888888888888887774 5667776 4777877775
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=2.1e-13 Score=135.52 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=86.1
Q ss_pred CEEeccCcCCcccCccccCCCCCCEEecCCCCCccccc-ccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCC
Q 003945 337 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 415 (784)
Q Consensus 337 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~ 415 (784)
+.++++++.++.+|..+ .+.++.|++++|.+.+..+ ..+..+++|+.|++++|...+..+..+..+++|+.|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 35666666666666544 2345667777666555533 23566677777777776655555556666777777777777
Q ss_pred ccccCCcc-ccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcc
Q 003945 416 AVRRPPSS-VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 494 (784)
Q Consensus 416 ~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~ 494 (784)
.++.++.. +..+++|++|++++|.. ....+..+..+++|++|+|++|.+. +..|..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l----------------------~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~ 148 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRI----------------------TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCC----------------------CCBCTTSSTTCTTCSEEECTTSCCC-CBCTTT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcC----------------------CeECHhHcCCCccCCEEECCCCcCC-EECHHH
Confidence 76665543 44455555555555441 1111334455555666666665554 333555
Q ss_pred cCCCCCCCEEecCCCCCc
Q 003945 495 IGNLHSLNELYLSKNNFV 512 (784)
Q Consensus 495 l~~l~~L~~L~L~~n~l~ 512 (784)
+..+++|+.|+|++|.+.
T Consensus 149 ~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTCTTCCEEECCSCCEE
T ss_pred hcCCCCCCEEEecCcCCc
Confidence 555666666666665554
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=2e-13 Score=135.57 Aligned_cols=151 Identities=23% Similarity=0.275 Sum_probs=88.9
Q ss_pred cEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcC
Q 003945 266 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 345 (784)
Q Consensus 266 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 345 (784)
+.++++++.++.+|..+. ++|+.|++++|......+..+..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 455666666666665443 456666666643322223345566666666666666555556666666666666666666
Q ss_pred CcccCcc-ccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc
Q 003945 346 ITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 418 (784)
Q Consensus 346 i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~ 418 (784)
++.+|.. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6666544 455666666666666655555555566666666666665555444445555555666666555543
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=2.2e-14 Score=146.77 Aligned_cols=166 Identities=18% Similarity=0.222 Sum_probs=92.3
Q ss_pred ccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEc
Q 003945 309 FQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNL 388 (784)
Q Consensus 309 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L 388 (784)
+.++..++++++... .++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+..+ +
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l----------- 81 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--L----------- 81 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--G-----------
T ss_pred HHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--h-----------
Confidence 444555555554322 222 3445555555665555555554 34455555555555554333222 4
Q ss_pred cCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCC
Q 003945 389 SGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP 468 (784)
Q Consensus 389 s~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 468 (784)
..+++|+.|++++|.++.+|.... ++|+.|++++|.... .+
T Consensus 82 -------------~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~------------------------~~ 122 (263)
T 1xeu_A 82 -------------KDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRD------------------------TD 122 (263)
T ss_dssp -------------TTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSB------------------------SG
T ss_pred -------------ccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCC------------------------Ch
Confidence 444455555555555554443222 555555555554110 12
Q ss_pred CCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchhhhcCCCCCeecccccc
Q 003945 469 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 469 ~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 533 (784)
.+..+++|+.|++++|.+.+ ++ .++.+++|+.|++++|.++.+ ..+..+++|+.|++++|+
T Consensus 123 ~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 123 SLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred hhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 35566777777777777753 33 567777777777777777766 567777777888777776
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=1.9e-15 Score=171.63 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=103.0
Q ss_pred ccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccC
Q 003945 311 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 390 (784)
Q Consensus 311 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~ 390 (784)
.|+.|++++|.... +|. ++.+++|+.|++++|.++.+|..++.+++|+.|+|++|.+.+ +| .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 58899999876544 676 888999999999999999999999999999999999998776 66 788999999999999
Q ss_pred CCCCCcC-CCCCCCCCCccEEecCCCccccCCcccc----ccccccEEec
Q 003945 391 CCKLENV-PDTLGQVESLEELDISETAVRRPPSSVF----LMKNLRTLSF 435 (784)
Q Consensus 391 c~~l~~~-~~~l~~l~~L~~L~l~~~~i~~lp~~~~----~l~~L~~L~l 435 (784)
|...+.. |..++.+++|+.|++++|.++.+|+... .+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8877766 8899999999999999999998876543 3788888864
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=5.2e-13 Score=132.62 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=65.0
Q ss_pred EEEecCCCccccChhhhcccCCceeeccCccCCCCCc-cccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcC
Q 003945 267 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLP-VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 345 (784)
Q Consensus 267 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 345 (784)
.++++++.++.+|..+. ..++.|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 45555555555554332 223445554432211111 123444444444444444333333344444444444444444
Q ss_pred CcccCcc-ccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCcc
Q 003945 346 ITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAV 417 (784)
Q Consensus 346 i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i 417 (784)
++.++.. +..+++|+.|++++|.+.+..|..+..+++|++|++++|...+..|..+..+++|+.|++++|.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 4443322 44444444444444444444444444444444444444444443344444444444444444443
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=7.3e-13 Score=132.48 Aligned_cols=150 Identities=19% Similarity=0.144 Sum_probs=67.7
Q ss_pred cEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcC
Q 003945 266 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 345 (784)
Q Consensus 266 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 345 (784)
+.++.+++.+..+|..+. ++|+.|++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 345555555555554332 445555555543333334444445555555555544333333334444555555555555
Q ss_pred CcccCcc-ccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccc
Q 003945 346 ITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 418 (784)
Q Consensus 346 i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~ 418 (784)
++.++.. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|......+..+..+++|+.|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 4444332 344444444444444433 33444444444444444444333322233444444444444444433
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=9.4e-14 Score=142.11 Aligned_cols=164 Identities=20% Similarity=0.256 Sum_probs=87.4
Q ss_pred cCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccC
Q 003945 264 CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 343 (784)
Q Consensus 264 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 343 (784)
++..++++++.++.++ .+..+++|+.|++++| .+..++ .+..+++|+.|++++|...... . +..+++|+.|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEECCC
Confidence 3444444444444444 3445555555555553 333444 3445555555555554433322 2 55555556666666
Q ss_pred cCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCcc
Q 003945 344 TSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS 423 (784)
Q Consensus 344 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~ 423 (784)
|.++.+|.... ++|+.|++++|.+.+. + .+..+++|+.|++++|...+ ++ .++.+++|+.|++++|.++.+ ..
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~ 167 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GG 167 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TT
T ss_pred CccCCcCcccc--CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HH
Confidence 65555544322 5666666666554432 2 35556666666666655433 22 455566666666666666655 45
Q ss_pred ccccccccEEecCCCC
Q 003945 424 VFLMKNLRTLSFSGCN 439 (784)
Q Consensus 424 ~~~l~~L~~L~l~~~~ 439 (784)
+..+++|+.|++++|.
T Consensus 168 l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp STTCCCCCEEEEEEEE
T ss_pred hccCCCCCEEeCCCCc
Confidence 5666666666666655
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=4.1e-13 Score=144.31 Aligned_cols=172 Identities=16% Similarity=0.109 Sum_probs=128.9
Q ss_pred cEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccc-cccccCeEeecCCCCCccCcccccCCCCCCEEeccCc
Q 003945 266 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAIS-SFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 344 (784)
Q Consensus 266 ~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 344 (784)
+.++++++.++.+|..+. ..++.|+|++|......+..+. .+++|+.|++++|......+..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456677777777776543 3467777777543333333344 6888888888888777666677888889999999999
Q ss_pred CCcccCc-cccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCC---CCCCCccEEecCCCccccC
Q 003945 345 SITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTL---GQVESLEELDISETAVRRP 420 (784)
Q Consensus 345 ~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l---~~l~~L~~L~l~~~~i~~l 420 (784)
.++.++. .+..+++|+.|+|++|.+....+..+.++++|+.|+|++|......+..+ ..+++|+.|++++|.++.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 8887765 47888999999999998887778888899999999999986655333333 5689999999999999988
Q ss_pred Cc-ccccccc--ccEEecCCCC
Q 003945 421 PS-SVFLMKN--LRTLSFSGCN 439 (784)
Q Consensus 421 p~-~~~~l~~--L~~L~l~~~~ 439 (784)
|. .+..++. |+.|++.+|+
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSC
T ss_pred CHHHhhhccHhhcceEEecCCC
Confidence 74 4566776 4889999887
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=4.8e-13 Score=126.85 Aligned_cols=130 Identities=22% Similarity=0.241 Sum_probs=78.9
Q ss_pred CCCCCEEecCCCCCc-ccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCcccc-CCccccccccccEE
Q 003945 356 LPGLELLNLNDCKNF-ARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVFLMKNLRTL 433 (784)
Q Consensus 356 l~~L~~L~L~~~~~~-~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L 433 (784)
.++|+.|++++|.+. +.+|..+..+++|+.|++++|..... ..+..+++|+.|++++|.++. +|..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~---------- 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML---------- 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH----------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH----------
Confidence 456666666666654 45555555566666666666553332 444555555555555555544 3222
Q ss_pred ecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcc
Q 003945 434 SFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT 513 (784)
Q Consensus 434 ~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~ 513 (784)
+..+++|++|++++|.+..-..+..+..+++|+.|++++|.++.
T Consensus 91 ------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 91 ------------------------------------AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp ------------------------------------HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred ------------------------------------HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 23355666666666666421122567777888888888888877
Q ss_pred cch----hhhcCCCCCeecccccc
Q 003945 514 LPA----SINSLLNLKELEMEDCK 533 (784)
Q Consensus 514 lp~----~i~~l~~L~~L~L~~c~ 533 (784)
+|. .+..+++|+.|++++|+
T Consensus 135 ~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 135 LNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp STTHHHHHHTTCSSCCEETTEETT
T ss_pred hHHHHHHHHHhCccCcEecCCCCC
Confidence 775 67778888888888775
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=1.6e-13 Score=160.82 Aligned_cols=153 Identities=18% Similarity=0.115 Sum_probs=92.3
Q ss_pred ccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCC
Q 003945 255 FPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTME 334 (784)
Q Consensus 255 ~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 334 (784)
.+..+..+..|+.|++++|.+..+|..+..+++|+.|+|++|. +..+|..+..+++|++|+|++|... .+|..++.++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 3455566666666666666666666666677777777777653 3366666777777777777776654 5676777777
Q ss_pred CCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCC-CCEEEccCCCCCCcCCCCCCCCCCccEEecC
Q 003945 335 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKS-LKTLNLSGCCKLENVPDTLGQVESLEELDIS 413 (784)
Q Consensus 335 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~-L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~ 413 (784)
+|++|+|++|.+..+|..++.+++|+.|+|++|.+.+.+|..+..+.. +..|++++|...+.+|.. |+.|+++
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~ 367 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEIN 367 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------------
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEee
Confidence 777777777777777777777777777777777777766665543321 123556666666655543 4445555
Q ss_pred CC
Q 003945 414 ET 415 (784)
Q Consensus 414 ~~ 415 (784)
.|
T Consensus 368 ~n 369 (727)
T 4b8c_D 368 TD 369 (727)
T ss_dssp --
T ss_pred cc
Confidence 44
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=4.2e-13 Score=124.48 Aligned_cols=128 Identities=19% Similarity=0.165 Sum_probs=78.8
Q ss_pred CCCCEEEccCCCCC-CcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCc
Q 003945 381 KSLKTLNLSGCCKL-ENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS 459 (784)
Q Consensus 381 ~~L~~L~Ls~c~~l-~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~ 459 (784)
++|+.|++++|... +.+|..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.....
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~---------------- 79 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG---------------- 79 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC----------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch----------------
Confidence 44555555555444 34555555555555555555555554 4455555666666655542110
Q ss_pred cchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccch----hhhcCCCCCeecccc
Q 003945 460 SCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA----SINSLLNLKELEMED 531 (784)
Q Consensus 460 ~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~----~i~~l~~L~~L~L~~ 531 (784)
.|..+..+++|++|++++|.+.+-..+..++.+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 80 ------~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 80 ------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ------THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ------HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 122234467777777777777531233678888888899998888887775 678888888888764
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=2e-12 Score=119.88 Aligned_cols=128 Identities=21% Similarity=0.216 Sum_probs=102.4
Q ss_pred ccccCeEeecCCCCC-ccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEE
Q 003945 309 FQCLRNLKLSGCSKL-KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLN 387 (784)
Q Consensus 309 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ 387 (784)
.++|+.|++++|... +.+|..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.+.+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 467777777777665 46677777788888888888888877 6678888888999988888777777777788999999
Q ss_pred ccCCCCCCc-CCCCCCCCCCccEEecCCCccccCCc----cccccccccEEecCC
Q 003945 388 LSGCCKLEN-VPDTLGQVESLEELDISETAVRRPPS----SVFLMKNLRTLSFSG 437 (784)
Q Consensus 388 Ls~c~~l~~-~~~~l~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~~ 437 (784)
+++|...+. .+..++.+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 998876552 34778888999999999999998876 677899999998763
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=6e-13 Score=155.85 Aligned_cols=116 Identities=21% Similarity=0.279 Sum_probs=68.1
Q ss_pred CCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCC
Q 003945 301 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 380 (784)
Q Consensus 301 ~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l 380 (784)
..+..+..+++|+.|+|++|... .+|..+..+++|++|+|++|.++.+|..+..+++|+.|+|++|.+. .+|..++.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 33444555666666666665543 4555555666666666666666666666666666666666666655 556666666
Q ss_pred CCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCcccc
Q 003945 381 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 419 (784)
Q Consensus 381 ~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~ 419 (784)
++|++|+|++|.. +.+|..++.+++|+.|+|++|.++.
T Consensus 293 ~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 293 FQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCC
Confidence 6666666666543 3556666666666666666666663
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=5.6e-12 Score=119.39 Aligned_cols=127 Identities=21% Similarity=0.297 Sum_probs=63.0
Q ss_pred CcCcEEEecCCCcc--ccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEe
Q 003945 263 ECLQELLLDGTDIK--ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 340 (784)
Q Consensus 263 ~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 340 (784)
++|++|+++++.+. .+|..+..+++|+.|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444444 444444455555555555543 2223 3345555666666666555444555555556666666
Q ss_pred ccCcCCcccC--ccccCCCCCCEEecCCCCCccccc---ccccCCCCCCEEEccCC
Q 003945 341 LDGTSITEVP--SSIELLPGLELLNLNDCKNFARVP---SSINGLKSLKTLNLSGC 391 (784)
Q Consensus 341 L~~~~i~~lp--~~l~~l~~L~~L~L~~~~~~~~l~---~~~~~l~~L~~L~Ls~c 391 (784)
+++|.++.+| ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 6666555544 344555555555555554433222 23444444444444443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=1.7e-11 Score=118.87 Aligned_cols=128 Identities=23% Similarity=0.316 Sum_probs=78.8
Q ss_pred CEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccc-cccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCC
Q 003945 337 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPS-SINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 415 (784)
Q Consensus 337 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~ 415 (784)
+.++++++.++.+|..+. ++|+.|++++|.+.+..+. .+..+++|++|++++|...+..|..+..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 466677777777766443 2667777777665444433 3566666666666666665555556666666666666666
Q ss_pred ccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCccc
Q 003945 416 AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 495 (784)
Q Consensus 416 ~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l 495 (784)
.++.++ +..+..+++|++|++++|.+. +..|..+
T Consensus 89 ~l~~~~---------------------------------------------~~~~~~l~~L~~L~L~~N~l~-~~~~~~~ 122 (192)
T 1w8a_A 89 KIKEIS---------------------------------------------NKMFLGLHQLKTLNLYDNQIS-CVMPGSF 122 (192)
T ss_dssp CCCEEC---------------------------------------------SSSSTTCTTCCEEECCSSCCC-EECTTSS
T ss_pred cCCccC---------------------------------------------HHHhcCCCCCCEEECCCCcCC-eeCHHHh
Confidence 554433 223455666666666666664 4456667
Q ss_pred CCCCCCCEEecCCCCCc
Q 003945 496 GNLHSLNELYLSKNNFV 512 (784)
Q Consensus 496 ~~l~~L~~L~L~~n~l~ 512 (784)
..+++|++|+|++|.+.
T Consensus 123 ~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 123 EHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCTTCCEEECTTCCBC
T ss_pred hcCCCCCEEEeCCCCcc
Confidence 77777777777777666
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=1.2e-11 Score=118.23 Aligned_cols=61 Identities=23% Similarity=0.314 Sum_probs=42.3
Q ss_pred CCCCCCCEEecCCCCCCCCCCCc--ccCCCCCCCEEecCCCCCcccchh----hhcCCCCCeecccccc
Q 003945 471 SGLRSLTKLDLSDCGLGEGAIPS--DIGNLHSLNELYLSKNNFVTLPAS----INSLLNLKELEMEDCK 533 (784)
Q Consensus 471 ~~l~~L~~L~Ls~~~l~~~~~p~--~l~~l~~L~~L~L~~n~l~~lp~~----i~~l~~L~~L~L~~c~ 533 (784)
..+++|++|++++|.+. .+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|+
T Consensus 85 ~~l~~L~~L~L~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV--ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCCCC--CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCcCC--cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 45666666666666663 3554 667777777777777777777764 6777777777777664
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=2.5e-11 Score=128.55 Aligned_cols=125 Identities=14% Similarity=0.018 Sum_probs=91.3
Q ss_pred ccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCcc-ccCCCCCCEEecCCCCCcccccccccCCCCCC-EE
Q 003945 309 FQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLK-TL 386 (784)
Q Consensus 309 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~-~L 386 (784)
..++..+.+.+.-...........+++|+.+++.+|.++.+|.. +..+++|+.|++.++ +...-+..|.++++|+ .+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 45566666665422222222223478899999999999988864 788999999999886 4444445788899999 99
Q ss_pred EccCCCCCCcCCCCCCCCCCccEEecCCCccccCCc-cccccccccEEec
Q 003945 387 NLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SVFLMKNLRTLSF 435 (784)
Q Consensus 387 ~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l 435 (784)
.+.+ .....-+..+.++++|+.|++.++.++.++. .+.++++|+.+..
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9987 3333345778899999999999999988876 5667888888763
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=5.5e-11 Score=115.19 Aligned_cols=124 Identities=23% Similarity=0.252 Sum_probs=95.3
Q ss_pred CEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchh
Q 003945 384 KTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 463 (784)
Q Consensus 384 ~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 463 (784)
+.++++++. +..+|..+. ++|+.|++++|.++.+|..+..+++|+.|++++|....
T Consensus 13 ~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~--------------------- 68 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST--------------------- 68 (193)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC---------------------
T ss_pred CEEEcCCCC-CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE---------------------
Confidence 456666643 445665443 57888888888888888888888888888888877221
Q ss_pred hccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchh-hhcCCCCCeecccccc
Q 003945 464 ALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 533 (784)
Q Consensus 464 ~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 533 (784)
..+..+..+++|++|+|++|.+. ...|..+..+++|+.|+|++|.++.+|.. +..+++|+.|++++|+
T Consensus 69 -i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 69 -LSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred -eCHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 12445788899999999999986 45556788999999999999999988874 7788899999988886
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=8.2e-11 Score=113.98 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=82.5
Q ss_pred CEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCc
Q 003945 337 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 416 (784)
Q Consensus 337 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~ 416 (784)
+.++++++.++.+|..+ .++|+.|++++|.+. .+|..+..+++|+.|++++|...+..+..+..+++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 35666666777666543 246677777766554 455566666666666666666555555556666666666666666
Q ss_pred cccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccC
Q 003945 417 VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 496 (784)
Q Consensus 417 i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~ 496 (784)
++.++ +..+..+++|++|+|++|.+. ...+..+.
T Consensus 90 l~~i~---------------------------------------------~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~ 123 (193)
T 2wfh_A 90 LRCIP---------------------------------------------PRTFDGLKSLRLLSLHGNDIS-VVPEGAFN 123 (193)
T ss_dssp CCBCC---------------------------------------------TTTTTTCTTCCEEECCSSCCC-BCCTTTTT
T ss_pred cCEeC---------------------------------------------HHHhCCCCCCCEEECCCCCCC-eeChhhhh
Confidence 55443 234566777777777777775 23334577
Q ss_pred CCCCCCEEecCCCCCc
Q 003945 497 NLHSLNELYLSKNNFV 512 (784)
Q Consensus 497 ~l~~L~~L~L~~n~l~ 512 (784)
.+++|+.|+|++|.+.
T Consensus 124 ~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 124 DLSALSHLAIGANPLY 139 (193)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cCccccEEEeCCCCee
Confidence 8888999999988776
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=4.7e-11 Score=115.68 Aligned_cols=88 Identities=24% Similarity=0.313 Sum_probs=42.5
Q ss_pred cCCCCCCEEeccCcCCccc-CccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccE
Q 003945 331 TTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEE 409 (784)
Q Consensus 331 ~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~ 409 (784)
+.+++|++|++++|.++.+ |..+..+++|+.|++++|.+.+..+..+.++++|++|++++|...+..|..+..+++|+.
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 3334444444444444433 233444444444444444444444444445555555555555554444555555555555
Q ss_pred EecCCCccc
Q 003945 410 LDISETAVR 418 (784)
Q Consensus 410 L~l~~~~i~ 418 (784)
|++++|.+.
T Consensus 131 L~L~~N~l~ 139 (192)
T 1w8a_A 131 LNLASNPFN 139 (192)
T ss_dssp EECTTCCBC
T ss_pred EEeCCCCcc
Confidence 555555554
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=1.1e-10 Score=111.36 Aligned_cols=130 Identities=21% Similarity=0.235 Sum_probs=71.6
Q ss_pred CEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCc
Q 003945 337 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 416 (784)
Q Consensus 337 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~ 416 (784)
+.++++++.++.+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|...+..+..+..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 45666666666666433 2466666666665544333344555555555555554433333334444445555544444
Q ss_pred cccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccC
Q 003945 417 VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 496 (784)
Q Consensus 417 i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~ 496 (784)
++.+| +..+..+++|++|++++|.+. ...+..+.
T Consensus 88 l~~~~---------------------------------------------~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~ 121 (177)
T 2o6r_A 88 LQSLP---------------------------------------------NGVFDKLTQLKELALDTNQLK-SVPDGIFD 121 (177)
T ss_dssp CCCCC---------------------------------------------TTTTTTCTTCCEEECCSSCCS-CCCTTTTT
T ss_pred ccccC---------------------------------------------HHHhhCCcccCEEECcCCcce-EeCHHHhc
Confidence 44332 222455667777777777664 23333456
Q ss_pred CCCCCCEEecCCCCCccc
Q 003945 497 NLHSLNELYLSKNNFVTL 514 (784)
Q Consensus 497 ~l~~L~~L~L~~n~l~~l 514 (784)
.+++|++|++++|.+...
T Consensus 122 ~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 122 RLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCTTCCEEECCSSCBCCC
T ss_pred CCcccCEEEecCCCeecc
Confidence 777788888887777643
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.20 E-value=3.6e-11 Score=114.79 Aligned_cols=131 Identities=19% Similarity=0.246 Sum_probs=96.1
Q ss_pred cccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCE
Q 003945 306 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKT 385 (784)
Q Consensus 306 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 385 (784)
+..+++|+.|++++|... .++......++|+.|++++|.++.+ ..+..+++|+.|++++|.+....+..+..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344667777777776544 3444333344788888888887776 56777888888888888766543344477888888
Q ss_pred EEccCCCCCCcCCC--CCCCCCCccEEecCCCccccCCcc----ccccccccEEecCCCC
Q 003945 386 LNLSGCCKLENVPD--TLGQVESLEELDISETAVRRPPSS----VFLMKNLRTLSFSGCN 439 (784)
Q Consensus 386 L~Ls~c~~l~~~~~--~l~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~~ 439 (784)
|++++|.. +.+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 93 L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 88888765 45555 677888899999999999888875 7889999999998876
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=6.6e-11 Score=125.33 Aligned_cols=257 Identities=14% Similarity=0.098 Sum_probs=136.6
Q ss_pred CCCcceEEEcCcccc--CchhhcCcCccEEEEecCCCCCCCCCC--C--------CCCeeEEEeCCCCccccccc-ccCC
Q 003945 119 MTNLGLLKINNVQLL--EGLEYLSNKLRLLDWHRYPLKSLPSNL--Q--------LDKIVEFKMCYSRIEELWKG-IKHL 185 (784)
Q Consensus 119 ~~~Lr~L~l~~~~l~--~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~--------l~~L~~L~L~~~~i~~l~~~-~~~l 185 (784)
+++|+.|++++|++. .........++.+.+..+ .+|... . +.+|+.|+|++ .++.+++. |..|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 667888888888776 222222223445555444 455443 6 88899999988 88887654 7888
Q ss_pred CCccEEEcCCCCCCCCCC-CCCCCCCccEEEecCCcc---CcccCccccccCcccccCCcc-EEEecCCCCCcc-ccccc
Q 003945 186 NMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTK---LRKVHPSLLLHNKLIFVESLK-ILILSGCLKLRK-FPHVV 259 (784)
Q Consensus 186 ~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~---l~~~~~~i~~l~~L~~l~~L~-~L~ls~~~~~~~-~~~~l 259 (784)
++|+.|+++++......+ .|..+.++..+.+..... ...+.. .....+..|+ .+.+........ +...-
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~-----~~f~~~~~L~~~i~~~~~~~l~~~~~~~~ 198 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH-----FAFIEGEPLETTIQVGAMGKLEDEIMKAG 198 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT-----SCEEESCCCEEEEEECTTCCHHHHHHHTT
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc-----cccccccccceeEEecCCCcHHHHHhhcc
Confidence 999999998887654433 466666666666544210 001000 0001122233 233332111000 00011
Q ss_pred cCCCcCcEEEecCCCccccChhh-hcccCCceeeccCccCCCCCcc-ccccccccCeEeecCCCCCccCcccccCCCCCC
Q 003945 260 GSMECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLS 337 (784)
Q Consensus 260 ~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 337 (784)
....++..+.+.++-...-...+ ..+++|+.|++.+|. +..+|. .+.++++|+.|++.++ .....+..+.++++|+
T Consensus 199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 12344444444443211111111 125566666666543 344433 3566666666666664 3333345566666776
Q ss_pred -EEeccCcCCcccC-ccccCCCCCCEEecCCCCCcccccccccCCCCCCEEE
Q 003945 338 -ELNLDGTSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLN 387 (784)
Q Consensus 338 -~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ 387 (784)
.+.+.+ .++.++ ..+..+++|+.+++.++.+...-+..|.++++|+.+.
T Consensus 277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 777766 566554 4466777777777766665555555677777777765
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=3.7e-10 Score=107.73 Aligned_cols=111 Identities=17% Similarity=0.194 Sum_probs=63.2
Q ss_pred cccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCcc-ccCCCCCCEEecCCCCCcccccccccCCCCCCEEEc
Q 003945 310 QCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNL 388 (784)
Q Consensus 310 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L 388 (784)
++|++|++++|......+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 3444555544443333333445555555666666655555433 455666666666666655544445566667777777
Q ss_pred cCCCCCCcCCCCCCCCCCccEEecCCCccccC
Q 003945 389 SGCCKLENVPDTLGQVESLEELDISETAVRRP 420 (784)
Q Consensus 389 s~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~l 420 (784)
++|...+..+..+..+++|+.|++++|.+...
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 76655443334456677777777777776643
No 135
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.07 E-value=1.6e-11 Score=139.18 Aligned_cols=82 Identities=13% Similarity=0.021 Sum_probs=68.2
Q ss_pred CCeeeEeccCCChhhhchhc-----------ceecccCccCHHHHHHHhhhc--CCCchh-----------hhHhhhccc
Q 003945 1 MNILQISFDGLQDSEKKIFL-----------DVACFFKRWDRDYVAKILEGC--GFSPVI-----------GIEVLIERS 56 (784)
Q Consensus 1 ~~iL~lSYd~L~~~lK~cFl-----------~~a~Fp~~~~~~~l~~~w~a~--gf~~~~-----------~~~~Li~r~ 56 (784)
+++|++||++||.++|.||+ |||+||+|++.+ +++|+|+ ||+... .+++|++||
T Consensus 364 ~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rs 441 (549)
T 2a5y_B 364 ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRG 441 (549)
T ss_dssp CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBS
T ss_pred HHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcC
Confidence 36899999999999999999 999999997777 8999999 888643 399999999
Q ss_pred ceeEeCC---CceecchHHHHHHHHHHHhcC
Q 003945 57 LLTVDDY---NTLGMHNSLQELGQLIVTRQS 84 (784)
Q Consensus 57 li~~~~~---~~v~mHdll~d~~~~i~~~e~ 84 (784)
|++.... ++++|||++|++|+.++++++
T Consensus 442 Ll~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 442 ALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9997643 368999999999999887665
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=9.1e-13 Score=128.64 Aligned_cols=125 Identities=22% Similarity=0.258 Sum_probs=80.7
Q ss_pred cccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCccccccccc
Q 003945 376 SINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNL 455 (784)
Q Consensus 376 ~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 455 (784)
.+..+++|++|++++|.... +| .+..+++|+.|++++|.++.+|..+..+++|+.|++++|....
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~------------- 107 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS------------- 107 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-------------
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-------------
Confidence 56666677777776665443 55 5666777777777777777777766667777777777765111
Q ss_pred ccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCC--cccCCCCCCCEEecCCCCCcccch-----------hhhcCC
Q 003945 456 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP--SDIGNLHSLNELYLSKNNFVTLPA-----------SINSLL 522 (784)
Q Consensus 456 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p--~~l~~l~~L~~L~L~~n~l~~lp~-----------~i~~l~ 522 (784)
++ .+..+++|++|++++|.+.. ++ ..+..+++|++|++++|.+...+. .+..++
T Consensus 108 ----------l~-~~~~l~~L~~L~l~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 108 ----------LS-GIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp ----------HH-HHHHHHHSSEEEESEEECCC--HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred ----------CC-ccccCCCCCEEECCCCcCCc--hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 01 24456677777777777742 33 356777788888888877764322 256677
Q ss_pred CCCeec
Q 003945 523 NLKELE 528 (784)
Q Consensus 523 ~L~~L~ 528 (784)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 777765
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=3.4e-12 Score=124.48 Aligned_cols=128 Identities=18% Similarity=0.212 Sum_probs=88.3
Q ss_pred cccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCC
Q 003945 256 PHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED 335 (784)
Q Consensus 256 ~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 335 (784)
|..++.+++|++|++++|.+..+| .+..+++|+.|++++|. +..+|..+..+++|++|++++|.... +| .+..+++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 337777778888888888777777 77777888888887753 44667666666778888877765443 34 4666777
Q ss_pred CCEEeccCcCCcccCc--cccCCCCCCEEecCCCCCccccccc----------ccCCCCCCEEE
Q 003945 336 LSELNLDGTSITEVPS--SIELLPGLELLNLNDCKNFARVPSS----------INGLKSLKTLN 387 (784)
Q Consensus 336 L~~L~L~~~~i~~lp~--~l~~l~~L~~L~L~~~~~~~~l~~~----------~~~l~~L~~L~ 387 (784)
|+.|++++|.++.++. .+..+++|+.|++++|.+.+..|.. +..+++|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7777777777776554 5677777777777777665554432 55566666665
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.03 E-value=1.8e-08 Score=109.01 Aligned_cols=264 Identities=11% Similarity=0.124 Sum_probs=131.8
Q ss_pred CCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCc
Q 003945 185 LNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 264 (784)
Q Consensus 185 l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~ 264 (784)
+..++.+.+.++-.......|.+. +|+.+.+..+ +..++...+.- .+|+.+.+.. .....-+..|.+|.+
T Consensus 112 ~~~l~~i~ip~~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~------~~L~~i~lp~-~l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 112 LKGYNEIILPNSVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN------STVQEIVFPS-TLEQLKEDIFYYCYN 181 (401)
T ss_dssp CSSCSEEECCTTCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT------CCCCEEECCT-TCCEECSSTTTTCTT
T ss_pred cCCccEEEECCccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC------CCceEEEeCC-CccEehHHHhhCccc
Confidence 355566666553211122245553 5777776552 44444332221 1355566664 333334466777888
Q ss_pred CcEEEecCCCccccChhhhcccCCceeeccCccCCCCCc-cccccccccCeEeecCCCCCccCcccccCCCCCCEEeccC
Q 003945 265 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLP-VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 343 (784)
Q Consensus 265 L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 343 (784)
|+.+++..+.+..++.......+|+.+.+..+ +..++ ..+.++++|+.+.+..+ ....-...+.+ .+|+.+.+.
T Consensus 182 L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp- 256 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP- 256 (401)
T ss_dssp CCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-
T ss_pred CCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-
Confidence 88888888888777766555667777777642 44433 23555666666666542 11111222223 445555542
Q ss_pred cCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCC-----CcCCCCCCCCCCccEEecCCCccc
Q 003945 344 TSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL-----ENVPDTLGQVESLEELDISETAVR 418 (784)
Q Consensus 344 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l-----~~~~~~l~~l~~L~~L~l~~~~i~ 418 (784)
+.++.++ ...|.++++|+.+.+.++... ..-...+..+++|+.+.+.+ .++
T Consensus 257 ~~i~~I~-----------------------~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 257 NGVTNIA-----------------------SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR 312 (401)
T ss_dssp TTCCEEC-----------------------TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred CCccEEC-----------------------hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence 2233332 223444445555554443222 12233455566666666653 344
Q ss_pred cCCc-cccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCC
Q 003945 419 RPPS-SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGN 497 (784)
Q Consensus 419 ~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~ 497 (784)
.++. .+.++++|+.+.+..+- . ......+.++ +|+.+++++|... ...+..+.+
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~l--~---------------------~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~ 367 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPANV--T---------------------QINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYG 367 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTTC--C---------------------EECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCC
T ss_pred EEhhhhhcCCCCccEEEECccc--c---------------------EEcHHhCCCC-CCCEEEEcCCCCc-ccccccccC
Confidence 4432 33345566666554321 0 0012345555 6666666666553 223334455
Q ss_pred CC-CCCEEecCCCCCc
Q 003945 498 LH-SLNELYLSKNNFV 512 (784)
Q Consensus 498 l~-~L~~L~L~~n~l~ 512 (784)
++ +++.|.+..+.+.
T Consensus 368 ~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 368 FPDDITVIRVPAESVE 383 (401)
T ss_dssp SCTTCCEEEECGGGHH
T ss_pred CCCCccEEEeCHHHHH
Confidence 53 5666666655433
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.01 E-value=1.9e-08 Score=108.90 Aligned_cols=260 Identities=10% Similarity=0.126 Sum_probs=117.0
Q ss_pred cCccEEEEecCCCCCCCCCC-CCCCeeEEEeCCCCccccccc-ccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecC
Q 003945 141 NKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEG 218 (784)
Q Consensus 141 ~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~ 218 (784)
..++.+.+.. .++.++... .-.+|+.+.+..+ ++.++.. |.+ .+|+.+.+..+-.......|.++++|+.+++.+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCTTCCEECSSTTTTCTTCCEEECTT
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCCCccEehHHHhhCcccCCeeecCC
Confidence 3444444433 234444332 2235777776654 5555443 444 357777776521111123466677777777765
Q ss_pred CccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccChhhhcccCCceeeccCccC
Q 003945 219 CTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKN 298 (784)
Q Consensus 219 ~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~ 298 (784)
+ .+..++...+. ..+|+.+.+..+ ....-...|.++.+|+.+.+..+ ++.++.....-.+|+.+.+.. .
T Consensus 190 n-~l~~I~~~aF~------~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~--~ 258 (401)
T 4fdw_A 190 T-KITKLPASTFV------YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN--G 258 (401)
T ss_dssp S-CCSEECTTTTT------TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET--T
T ss_pred C-cceEechhhEe------ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC--C
Confidence 3 45555544332 134555666532 33333445556666666665542 333333221114455555532 2
Q ss_pred CCCC-ccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccC-ccccCCCCCCEEecCCCCCccccccc
Q 003945 299 LSSL-PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNFARVPSS 376 (784)
Q Consensus 299 ~~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~l~~~ 376 (784)
+..+ ...+.++++|+.+.+.++.... +....++ ..+..+++|+.+.+.+ .....-...
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a 318 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL 318 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh
Confidence 2222 2234444555555554432210 0000222 2344555555555542 122222234
Q ss_pred ccCCCCCCEEEccCCCCCCcC-CCCCCCCCCccEEecCCCccccCCcc-cccc-ccccEEecCC
Q 003945 377 INGLKSLKTLNLSGCCKLENV-PDTLGQVESLEELDISETAVRRPPSS-VFLM-KNLRTLSFSG 437 (784)
Q Consensus 377 ~~~l~~L~~L~Ls~c~~l~~~-~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l-~~L~~L~l~~ 437 (784)
|.++.+|+.+.+..+ +..+ ...+.++ +|+.+.+.++....++.. +..+ .+++.|.+..
T Consensus 319 F~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred hcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 455555555555332 2222 2344555 566666665555544332 2223 2455555543
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.99 E-value=5.6e-08 Score=105.45 Aligned_cols=329 Identities=14% Similarity=0.138 Sum_probs=152.6
Q ss_pred CCCCCCC-C-CCCCeeEEEeCCCCcccccc-cccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccc
Q 003945 153 LKSLPSN-L-QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSL 229 (784)
Q Consensus 153 l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i 229 (784)
+.++... | ++.+|+.+.+.. .++.+++ .|.++.+|+.+++..+-.......+.++.+|+.+.+.. .+..+....
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPL--MLKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCT--TCCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccC--ceeeeccee
Confidence 3445533 3 678888888864 4677654 47788888888887652111233566777777766544 233222211
Q ss_pred cccCcccccCCccEEEecCCCCCccccccccCCCcCcEEEecCCCccccC-hhhhcccCCceeeccCccCCCCCc-cccc
Q 003945 230 LLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSLP-VAIS 307 (784)
Q Consensus 230 ~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~~l~ 307 (784)
+.- ...++...... ....-...+.++.+|+.+.+..+. ..++ ..+..+.+|+.+.+..+ ++.++ ..+.
T Consensus 136 F~~-----~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~ 205 (394)
T 4fs7_A 136 FKG-----CDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFA 205 (394)
T ss_dssp TTT-----CCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTT
T ss_pred eec-----ccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhc
Confidence 111 01111111111 111123445666666666665432 2232 23445555555555432 22222 1233
Q ss_pred cccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEE
Q 003945 308 SFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLN 387 (784)
Q Consensus 308 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ 387 (784)
++..|+.+.+.. +.. .+........+|+.+.+.... ...-...+.++.+|+.+.
T Consensus 206 ~~~~L~~i~~~~------------------------~~~-~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 206 ECILLENMEFPN------------------------SLY-YLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESIS 259 (394)
T ss_dssp TCTTCCBCCCCT------------------------TCC-EECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEE
T ss_pred cccccceeecCC------------------------Cce-EeehhhcccCCCceEEECCCc-eecccccccccccceeEE
Confidence 444444444432 211 111111222334444433211 111112334444555555
Q ss_pred ccCCCCCCcCCCCCCCCCCccEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccC
Q 003945 388 LSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALML 467 (784)
Q Consensus 388 Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 467 (784)
+..+ ........+..+..++.+......+.. ..+..+.+|+.+.+.++- . ....
T Consensus 260 ~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~i--~---------------------~I~~ 313 (394)
T 4fs7_A 260 IQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDSV--K---------------------FIGE 313 (394)
T ss_dssp ECCT-TCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTTC--C---------------------EECT
T ss_pred cCCC-cceeeccccccccccceeccCceeecc--cccccccccccccccccc--c---------------------eech
Confidence 4432 111122234444555555444332211 233445556666554321 0 0012
Q ss_pred CCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccch-hhhcCCCCCeeccccccccCcCCCCCCCce
Q 003945 468 PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQLPPNII 546 (784)
Q Consensus 468 ~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~i~~lp~sL~ 546 (784)
..+.++++|+.++|.++ +. ..-...+.+|++|+.+++..+ ++.+++ .+.++++|+.+.+..+ ++.+.
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~------- 381 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYR------- 381 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGG-------
T ss_pred hhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhh-------
Confidence 34566677777777543 32 122345677777887777655 565554 4566777777776543 22221
Q ss_pred EEEecCCccceee
Q 003945 547 FVKVNGCSSLVTL 559 (784)
Q Consensus 547 ~L~~~~C~~L~~l 559 (784)
-...+|++|+.+
T Consensus 382 -~~F~~c~~L~~I 393 (394)
T 4fs7_A 382 -YDFEDTTKFKWI 393 (394)
T ss_dssp -GGBCTTCEEEEE
T ss_pred -heecCCCCCcEE
Confidence 135577777765
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=2.2e-09 Score=101.51 Aligned_cols=66 Identities=23% Similarity=0.313 Sum_probs=42.0
Q ss_pred CCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccchh-hhcCCCCCeecccccc
Q 003945 467 LPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 533 (784)
Q Consensus 467 ~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 533 (784)
+..+..+++|++|+|++|.+. +..+..+..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 47 ~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 47 PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 344566666777777777664 33334456677777777777777766653 5667777777777665
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=2.5e-09 Score=101.49 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=61.5
Q ss_pred cEEecCCCccccCCccccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCC
Q 003945 408 EELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLG 487 (784)
Q Consensus 408 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~ 487 (784)
+.++++++.++.+|..+. ++|+.|++++|... +..+..+..+++|++|+|++|.+.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~----------------------~~~~~~~~~l~~L~~L~Ls~N~l~ 70 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQIT----------------------KLEPGVFDHLVNLQQLYFNSNKLT 70 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCC----------------------CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCcc----------------------ccCHHHhcCCcCCCEEECCCCCCC
Confidence 455555555555555443 55666666655411 111344666777777777777774
Q ss_pred CCCCCc-ccCCCCCCCEEecCCCCCcccchh-hhcCCCCCeecccccc
Q 003945 488 EGAIPS-DIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 533 (784)
Q Consensus 488 ~~~~p~-~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 533 (784)
+ +|. .+..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 71 -~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 71 -A-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp -C-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred -c-cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCC
Confidence 2 443 356777777777777777777664 6677777777777775
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=5.2e-09 Score=98.96 Aligned_cols=101 Identities=18% Similarity=0.263 Sum_probs=58.7
Q ss_pred CEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCc
Q 003945 337 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 416 (784)
Q Consensus 337 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~ 416 (784)
+.++++++.++.+|..+ .++|+.|++++|.+.+..|..+.++++|++|++++|...+..+..+..+++|+.|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 44555555555555443 2556666666665555555556666666666666655544444445566666666666666
Q ss_pred cccCCcc-ccccccccEEecCCCC
Q 003945 417 VRRPPSS-VFLMKNLRTLSFSGCN 439 (784)
Q Consensus 417 i~~lp~~-~~~l~~L~~L~l~~~~ 439 (784)
++.+|.. +..+++|+.|++++|+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 6665543 5556666666666655
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=5.4e-09 Score=99.19 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=62.3
Q ss_pred CEEeccCcCCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCc
Q 003945 337 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 416 (784)
Q Consensus 337 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~ 416 (784)
+.++++++.+..+|..+. ++|+.|++++|.+.+..|..+.++++|++|+|++|...+..+..+..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455666666666665443 566666666666655556666666666666666665444333345666666666666666
Q ss_pred cccCCcc-ccccccccEEecCCCC
Q 003945 417 VRRPPSS-VFLMKNLRTLSFSGCN 439 (784)
Q Consensus 417 i~~lp~~-~~~l~~L~~L~l~~~~ 439 (784)
++.+|.. +..+++|+.|++++|.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 6666654 5566667777776665
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.89 E-value=7.4e-08 Score=104.48 Aligned_cols=328 Identities=14% Similarity=0.105 Sum_probs=157.3
Q ss_pred cccCHHHHhcCCCcceEEEcCccccCchhhcCcCccEEEEecCCCCCCCC-CC-CCCCeeEEEeCCCCcccccc-cccCC
Q 003945 109 VHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELWK-GIKHL 185 (784)
Q Consensus 109 ~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l~~-~~~~l 185 (784)
..+...||.++.+|+.+.+..+ ++.++. .| ++.+|+.+++..+ ++.++. .+..+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~----------------------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c 116 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST----------------------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGC 116 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT----------------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred eEhHHHHhhCCCCceEEEeCCC----------------------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhccc
Confidence 4567778888888887766321 222222 23 4566666666543 444433 35666
Q ss_pred CCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCccccccccCCCcC
Q 003945 186 NMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL 265 (784)
Q Consensus 186 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L 265 (784)
.+|+.+.+..+-.......+.++..++....... ..+.. .....+.+|+.+.+..+ ....-...+.++.+|
T Consensus 117 ~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~---~~i~~-----~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L 187 (394)
T 4fs7_A 117 YALKSILLPLMLKSIGVEAFKGCDFKEITIPEGV---TVIGD-----EAFATCESLEYVSLPDS-METLHNGLFSGCGKL 187 (394)
T ss_dssp TTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTC---CEECT-----TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccchhhcccCceeeecceeeecccccccccCccc---cccch-----hhhcccCCCcEEecCCc-cceeccccccCCCCc
Confidence 6666665554322122223444443333322221 11111 11122445566666543 222334556677777
Q ss_pred cEEEecCCCccccC-hhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCc
Q 003945 266 QELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 344 (784)
Q Consensus 266 ~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 344 (784)
+.+.+..+ ++.++ ..+.++..|+.+.+... ...+........+|+.+.+... ........+..+..|+.+.+..+
T Consensus 188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred eEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 77777654 44333 34566667777666542 2222222333556777766542 12222334455666666666554
Q ss_pred CCcccCccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCccccCC-cc
Q 003945 345 SITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP-SS 423 (784)
Q Consensus 345 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~i~~lp-~~ 423 (784)
...--...+..+..++.+......+ ....+..+.+|+.+.+.. + ++.++ ..
T Consensus 264 ~~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~------------------------~-i~~I~~~a 315 (394)
T 4fs7_A 264 KLRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD------------------------S-VKFIGEEA 315 (394)
T ss_dssp TCEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT------------------------T-CCEECTTT
T ss_pred cceeeccccccccccceeccCceee---cccccccccccccccccc------------------------c-cceechhh
Confidence 3332233345555555555443211 112344455555555533 2 22222 12
Q ss_pred ccccccccEEecCCCCCCCCCCCcccccccccccCccchhhccCCCCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCE
Q 003945 424 VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNE 503 (784)
Q Consensus 424 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~ 503 (784)
+.++++|+.+++...- . ......+.++++|+.+.+..+ +. ..-...+.+|++|+.
T Consensus 316 F~~c~~L~~i~lp~~v--~---------------------~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 316 FESCTSLVSIDLPYLV--E---------------------EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKK 370 (394)
T ss_dssp TTTCTTCCEECCCTTC--C---------------------EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCE
T ss_pred hcCCCCCCEEEeCCcc--c---------------------EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCE
Confidence 3344455555443210 0 001234666777777777655 32 223346778888888
Q ss_pred EecCCCCCcccchhhhcCCCCCe
Q 003945 504 LYLSKNNFVTLPASINSLLNLKE 526 (784)
Q Consensus 504 L~L~~n~l~~lp~~i~~l~~L~~ 526 (784)
+++..+ ++.+...+.++++|+.
T Consensus 371 i~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 371 VELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp EEEEGG-GGGGGGGBCTTCEEEE
T ss_pred EEECCC-CEEhhheecCCCCCcE
Confidence 887643 3333334444444443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.65 E-value=3.9e-09 Score=113.12 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=47.7
Q ss_pred CCCCCEEeccCcCCcc-----cCccccCCCCCCEEecCCCCCccc----ccccccCCCCCCEEEccCCCCCCc----CCC
Q 003945 333 MEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNFAR----VPSSINGLKSLKTLNLSGCCKLEN----VPD 399 (784)
Q Consensus 333 l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~Ls~c~~l~~----~~~ 399 (784)
.++|++|++++|.++. ++..+...++|++|+|++|.+... ++..+...++|++|+|++|..... ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 3455555555555542 333345555666666666654332 233445556677777766655432 233
Q ss_pred CCCCCCCccEEecCCCcccc
Q 003945 400 TLGQVESLEELDISETAVRR 419 (784)
Q Consensus 400 ~l~~l~~L~~L~l~~~~i~~ 419 (784)
.+...++|+.|++++|.++.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 34445677777777777663
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.65 E-value=9.2e-10 Score=118.06 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=57.9
Q ss_pred CCCCCEEeccCcCCccc-----Ccccc-CCCCCCEEecCCCCCccccccc-ccCCCCCCEEEccCCCCCCcCCCCC----
Q 003945 333 MEDLSELNLDGTSITEV-----PSSIE-LLPGLELLNLNDCKNFARVPSS-INGLKSLKTLNLSGCCKLENVPDTL---- 401 (784)
Q Consensus 333 l~~L~~L~L~~~~i~~l-----p~~l~-~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~Ls~c~~l~~~~~~l---- 401 (784)
+++|+.|++++|.++.. ...+. ..++|+.|+|++|.+....... ...+++|++|++++|.........+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45688888888887632 22233 2357888888887764432222 2234567777777765543222222
Q ss_pred -CCCCCccEEecCCCcccc-----CCccccccccccEEecCCCC
Q 003945 402 -GQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCN 439 (784)
Q Consensus 402 -~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~ 439 (784)
...++|+.|++++|.++. ++..+...++|++|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 234556666666666542 22333444555555555544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=1.1e-07 Score=101.30 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=55.9
Q ss_pred EeccCc-CCcccCccccCCCCCCEEecCC-CCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCccEEecCCCc
Q 003945 339 LNLDGT-SITEVPSSIELLPGLELLNLND-CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 416 (784)
Q Consensus 339 L~L~~~-~i~~lp~~l~~l~~L~~L~L~~-~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~l~~l~~L~~L~l~~~~ 416 (784)
++++++ .++.+|. +..+++|+.|+|++ |.+.+..+..+.++++|+.|+|++|.+.+..|..+..+++|+.|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 344444 4555555 55555555555554 44444444455556666666666655555455555666666666666666
Q ss_pred cccCCccccccccccEEecCCCC
Q 003945 417 VRRPPSSVFLMKNLRTLSFSGCN 439 (784)
Q Consensus 417 i~~lp~~~~~l~~L~~L~l~~~~ 439 (784)
++.+|........|+.|++.+|.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 66665544443336666666655
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.52 E-value=1.4e-05 Score=86.33 Aligned_cols=60 Identities=13% Similarity=0.338 Sum_probs=26.6
Q ss_pred CCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccch-hhhcCCCCCeeccccc
Q 003945 470 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDC 532 (784)
Q Consensus 470 l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c 532 (784)
+.++.+|+.+.|..+ +. ..-...+.+|++|+.+.|..+ ++.+.. .+.++++|+.+.+.++
T Consensus 307 F~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred ecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 444455555555432 11 111233455555555555432 444432 3445555555555443
No 150
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.52 E-value=1.4e-08 Score=127.51 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=72.7
Q ss_pred CeeeEeccCCChhhhchhcceecccCc--cCHHHHHHHhhhcCCCchhhhHhhhcccceeEeCCCc---eecchHHHHHH
Q 003945 2 NILQISFDGLQDSEKKIFLDVACFFKR--WDRDYVAKILEGCGFSPVIGIEVLIERSLLTVDDYNT---LGMHNSLQELG 76 (784)
Q Consensus 2 ~iL~lSYd~L~~~lK~cFl~~a~Fp~~--~~~~~l~~~w~a~gf~~~~~~~~Li~r~li~~~~~~~---v~mHdll~d~~ 76 (784)
.+|++||+.||+++|.||+|||+||+| ++++.++.+|.+++...+..+++|+++||+++..++. ++|||++|+++
T Consensus 366 ~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~ 445 (1249)
T 3sfz_A 366 EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFL 445 (1249)
T ss_dssp HHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHH
Confidence 468899999999999999999999998 6889999999988766777899999999999887665 89999999998
Q ss_pred HHHHHhc
Q 003945 77 QLIVTRQ 83 (784)
Q Consensus 77 ~~i~~~e 83 (784)
+..++++
T Consensus 446 ~~~~~~~ 452 (1249)
T 3sfz_A 446 TEKNRSQ 452 (1249)
T ss_dssp HHHTGGG
T ss_pred HhhhhHH
Confidence 8876544
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=4.8e-07 Score=96.20 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=71.3
Q ss_pred EeecCCCCCccCcccccCCCCCCEEeccC-cCCcccC-ccccCCCCCCEEecCCCCCcccccccccCCCCCCEEEccCCC
Q 003945 315 LKLSGCSKLKKFPQIVTTMEDLSELNLDG-TSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 392 (784)
Q Consensus 315 L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~ 392 (784)
++.++++.+..+|. +..+++|+.|+|++ |.+..++ ..+..+++|+.|+|++|.+.+..|..+.++++|+.|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 45555434555666 66667777777775 7777666 357777788888888877777667777788888888888876
Q ss_pred CCCcCCCCCCCCCCccEEecCCCccccC
Q 003945 393 KLENVPDTLGQVESLEELDISETAVRRP 420 (784)
Q Consensus 393 ~l~~~~~~l~~l~~L~~L~l~~~~i~~l 420 (784)
.....+..+..++ |+.|++.+|.+...
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 6544344444444 88888888887643
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.49 E-value=1.2e-05 Score=87.05 Aligned_cols=154 Identities=11% Similarity=0.161 Sum_probs=80.2
Q ss_pred ccCHHHHhcCC-CcceEEEcCc--cccCchhhcCcCccEEEEecCC---CCCCCCC-C-CCCCeeEEEeCCCCccccc-c
Q 003945 110 HLSAKAFSLMT-NLGLLKINNV--QLLEGLEYLSNKLRLLDWHRYP---LKSLPSN-L-QLDKIVEFKMCYSRIEELW-K 180 (784)
Q Consensus 110 ~~~~~~f~~~~-~Lr~L~l~~~--~l~~~~~~l~~~Lr~L~l~~~~---l~~lp~~-~-~l~~L~~L~L~~~~i~~l~-~ 180 (784)
.+...||.+.+ .|+.+.+-.. .+...-..-..+|+.+.+..+. ++.+... | .+..|+.+.+..+ ++.++ .
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred EcCHhhccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 46677887774 5787777432 1222222233477777776543 4455433 3 5667776666543 44443 3
Q ss_pred cccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecCCccCcccCccccccCcccccCCccEEEecCCCCCcccccccc
Q 003945 181 GIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVG 260 (784)
Q Consensus 181 ~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ls~~~~~~~~~~~l~ 260 (784)
.+..+.+|+.+.+..+........+..+.+|+.+.+.. .+..+....+.. .+|+.+.+.... .......+.
T Consensus 132 aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~------~~l~~i~ip~~~-~~i~~~af~ 202 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG------TALTQIHIPAKV-TRIGTNAFS 202 (394)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT------CCCSEEEECTTC-CEECTTTTT
T ss_pred hhhhhcccccccccceeeeecccceecccccccccccc--eeeEeccccccc------cceeEEEECCcc-cccccchhh
Confidence 45677777777776543322334566777777777755 234433322221 234445554321 122233444
Q ss_pred CCCcCcEEEecCC
Q 003945 261 SMECLQELLLDGT 273 (784)
Q Consensus 261 ~l~~L~~L~l~~~ 273 (784)
.+..+........
T Consensus 203 ~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 203 ECFALSTITSDSE 215 (394)
T ss_dssp TCTTCCEEEECCS
T ss_pred hccccceeccccc
Confidence 5555555554443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.48 E-value=1.1e-07 Score=100.92 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=25.7
Q ss_pred hhhhcccCCceeeccCccCCCCCccccccccccCeEeecCCCCCccCccccc--CCCCCCEEec
Q 003945 280 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVT--TMEDLSELNL 341 (784)
Q Consensus 280 ~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~--~l~~L~~L~L 341 (784)
..+..+++|+.|.+++|... .++. +. +++|++|++..|.........+. .+++|+.|+|
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence 33444555555555544222 2222 22 45555555555443322222222 4555555554
No 154
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.46 E-value=1.7e-08 Score=117.28 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=64.3
Q ss_pred CeeeEeccCCChhh-hchhcceecccCc--cCHHHHHHHhhhcCCC-chhhhHhhhcccceeEeC-CCceecchHHHHHH
Q 003945 2 NILQISFDGLQDSE-KKIFLDVACFFKR--WDRDYVAKILEGCGFS-PVIGIEVLIERSLLTVDD-YNTLGMHNSLQELG 76 (784)
Q Consensus 2 ~iL~lSYd~L~~~l-K~cFl~~a~Fp~~--~~~~~l~~~w~a~gf~-~~~~~~~Li~r~li~~~~-~~~v~mHdll~d~~ 76 (784)
.+|++||+.||+++ |+||+|||+||+| +.++.++.+|+++|.. .+..+++|+++||++++. .++++|||++++++
T Consensus 357 aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 46889999999999 9999999999998 6678899999999732 345699999999999863 56899999999865
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=1.3e-07 Score=100.56 Aligned_cols=135 Identities=21% Similarity=0.255 Sum_probs=94.0
Q ss_pred CccccccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcc-cCccc--cCCCCCCEEecCCCC--C-----cc
Q 003945 302 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE-VPSSI--ELLPGLELLNLNDCK--N-----FA 371 (784)
Q Consensus 302 lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~l--~~l~~L~~L~L~~~~--~-----~~ 371 (784)
+...+..+++|+.|.+++|... .++. + .+++|+.|.+..+.+.. ....+ ..+|+|+.|+|+.+. . ..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4455667899999999987433 2333 2 37899999999888762 11223 378999999986321 1 11
Q ss_pred cccccc--cCCCCCCEEEccCCCCCCcCCCCC---CCCCCccEEecCCCcccc-----CCccccccccccEEecCCCC
Q 003945 372 RVPSSI--NGLKSLKTLNLSGCCKLENVPDTL---GQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCN 439 (784)
Q Consensus 372 ~l~~~~--~~l~~L~~L~Ls~c~~l~~~~~~l---~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~ 439 (784)
.+...+ ..+++|+.|++.+|......+..+ ..+++|+.|+|+.|.+.. ++..+..+++|+.|++++|.
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 111222 358999999999987754322222 357899999999998874 45566788999999999886
No 156
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.23 E-value=2.8e-07 Score=105.71 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=80.7
Q ss_pred eeeEeccCCChhhhchhcceecccCc--cCHHHHHHHhhhcCCCchhhhHhhhcccceeEeCCC---ceecchHHHHHHH
Q 003945 3 ILQISFDGLQDSEKKIFLDVACFFKR--WDRDYVAKILEGCGFSPVIGIEVLIERSLLTVDDYN---TLGMHNSLQELGQ 77 (784)
Q Consensus 3 iL~lSYd~L~~~lK~cFl~~a~Fp~~--~~~~~l~~~w~a~gf~~~~~~~~Li~r~li~~~~~~---~v~mHdll~d~~~ 77 (784)
+++.||+.||++.|.||+++|+||+| ++.+.+..+|.+++......++.|++++|+++..++ ++.|||++|++++
T Consensus 367 ~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~ 446 (591)
T 1z6t_A 367 AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLT 446 (591)
T ss_dssp HHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHH
Confidence 57889999999999999999999997 677899999987644456679999999999976543 5899999999887
Q ss_pred HHH------------HhcC-------CCCCCCcccccchHHHHHHHhhcc
Q 003945 78 LIV------------TRQS-------PEEPGKRSRLWRQEEVRHVLRKNT 108 (784)
Q Consensus 78 ~i~------------~~e~-------~~~~~~~~~l~~~~~i~~vl~~~~ 108 (784)
... +... ...++....+|....+.|+...+.
T Consensus 447 ~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~ 496 (591)
T 1z6t_A 447 EKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKM 496 (591)
T ss_dssp HHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCC
Confidence 652 1111 122334556677778888776655
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.18 E-value=0.00021 Score=76.69 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCCCCCCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCCCcccch-hhhcCCCCCeecc
Q 003945 469 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEM 529 (784)
Q Consensus 469 ~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L 529 (784)
.+.++++|+.+.+.++.+. ..-...+.+|++|+.+.|..+ ++.+.. .+.++++|+.+.+
T Consensus 281 aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 3556666777777666553 122345667777777777543 455543 3444455555443
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.05 E-value=0.00061 Score=72.97 Aligned_cols=104 Identities=12% Similarity=0.152 Sum_probs=47.1
Q ss_pred cccccccCeEeecCCCCCccCcccccCCCCCCEEeccCcCCcccCc-cccCCCCCCEEecCCCCCcccccccccCCCCCC
Q 003945 306 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLK 384 (784)
Q Consensus 306 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 384 (784)
+..+..|+.+.+..+ ....-...+..+.+|+.+.+..+ +..++. .+..+++|+.+.+.++.....-...+.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 344555555555432 11222233444555555555432 333332 345555566655554433333334455555566
Q ss_pred EEEccCCCCCCcCC-CCCCCCCCccEEecC
Q 003945 385 TLNLSGCCKLENVP-DTLGQVESLEELDIS 413 (784)
Q Consensus 385 ~L~Ls~c~~l~~~~-~~l~~l~~L~~L~l~ 413 (784)
.+.+... ++.+. ..+.++.+|+.+.+.
T Consensus 314 ~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 314 SVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred EEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 5555431 22222 234455555555543
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=2.6e-06 Score=81.43 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=35.6
Q ss_pred CCCCCEEecCCCCCCCCC---CCcccCCCCCCCEEec--CCCCCc-----ccchhhhcCCCCCeecccccc
Q 003945 473 LRSLTKLDLSDCGLGEGA---IPSDIGNLHSLNELYL--SKNNFV-----TLPASINSLLNLKELEMEDCK 533 (784)
Q Consensus 473 l~~L~~L~Ls~~~l~~~~---~p~~l~~l~~L~~L~L--~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 533 (784)
.++|++|+|++|.+.+.. +...+...++|++|+| ++|.+. .+...+...++|++|+|++|.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 455666666666664321 2344555666777777 667666 244455555666666666653
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=1e-05 Score=75.31 Aligned_cols=83 Identities=13% Similarity=0.241 Sum_probs=49.3
Q ss_pred CCCCEEecCCCCCCCCCCCcccCCCCCCCEEecCCCC-Cc-ccchhhhcC----CCCCeeccccccccCc-----CCCCC
Q 003945 474 RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN-FV-TLPASINSL----LNLKELEMEDCKRLQF-----LPQLP 542 (784)
Q Consensus 474 ~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~-l~-~lp~~i~~l----~~L~~L~L~~c~~L~~-----i~~lp 542 (784)
..|++|++++|.+++..+. .+..+++|+.|+|++|. ++ .--..+..+ ++|++|+|++|++++. +..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~- 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF- 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC-
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC-
Confidence 4567777777776644443 34667777777777764 44 111223332 3577777777776642 3333
Q ss_pred CCceEEEecCCcccee
Q 003945 543 PNIIFVKVNGCSSLVT 558 (784)
Q Consensus 543 ~sL~~L~~~~C~~L~~ 558 (784)
++|+.|++.+|+.++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 6677777777777653
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=1.3e-05 Score=74.74 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=37.3
Q ss_pred CCCCCC-CCCCeeEEEeCCCCcccc-cccccCCCCccEEEcCCCCCCCC--CCCCCCC----CCccEEEecCCccCc
Q 003945 155 SLPSNL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENLIK--TPDFTEA----PNLEELYLEGCTKLR 223 (784)
Q Consensus 155 ~lp~~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~--~~~l~~l----~~L~~L~L~~~~~l~ 223 (784)
.+|... .-.+|++|+++++.|+.. -..+..+++|++|+|++|...+. +..++.+ ++|++|+|++|+.++
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 445543 445677777777776542 23345666666666666653322 2233332 346666666665444
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.64 E-value=1.5e-05 Score=76.09 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=31.3
Q ss_pred cccccccCeEeecCC-CCCcc----CcccccCCCCCCEEeccCcCCcc-----cCccccCCCCCCEEecCCCCCc
Q 003945 306 ISSFQCLRNLKLSGC-SKLKK----FPQIVTTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNF 370 (784)
Q Consensus 306 l~~l~~L~~L~L~~~-~~~~~----~~~~~~~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~~~~~ 370 (784)
+...++|++|+|++| ..... +...+...++|++|++++|.+.. +...+...+.|++|+|++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 344556666666665 33321 23333444555555555555541 2233334444555555555443
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.11 E-value=0.00035 Score=70.12 Aligned_cols=62 Identities=24% Similarity=0.289 Sum_probs=28.4
Q ss_pred ccccCeEeecCCCCCc--cCcccccCCCCCCEEeccCcCCcccCccccCCC--CCCEEecCCCCCcc
Q 003945 309 FQCLRNLKLSGCSKLK--KFPQIVTTMEDLSELNLDGTSITEVPSSIELLP--GLELLNLNDCKNFA 371 (784)
Q Consensus 309 l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~--~L~~L~L~~~~~~~ 371 (784)
+++|+.|+|++|.... .++..+..+++|+.|+|++|.+..+.. +..+. +|+.|+|.+|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCcc
Confidence 4445555555544333 233444455555555555555554311 12122 55555555555444
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.08 E-value=0.00042 Score=69.55 Aligned_cols=41 Identities=27% Similarity=0.292 Sum_probs=22.3
Q ss_pred cCCccEEEecCCCCCc--cccccccCCCcCcEEEecCCCcccc
Q 003945 238 VESLKILILSGCLKLR--KFPHVVGSMECLQELLLDGTDIKEL 278 (784)
Q Consensus 238 l~~L~~L~ls~~~~~~--~~~~~l~~l~~L~~L~l~~~~i~~l 278 (784)
+++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.++.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 4455556666655544 3444455555555655555555544
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.65 E-value=0.045 Score=48.16 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=28.1
Q ss_pred EEEEecCCCC--CCCCCCCCCCeeEEEeCCCCccccccc-ccCCCCccEEEcCCC
Q 003945 145 LLDWHRYPLK--SLPSNLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHS 196 (784)
Q Consensus 145 ~L~l~~~~l~--~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~ 196 (784)
.++.++..++ .+|..+ ..+|++|+|++|.|+.++.+ +..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555566665 666443 23456666666666665543 355555555555555
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.07 E-value=0.054 Score=47.64 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=45.9
Q ss_pred ceEEEcCcccc--CchhhcCcCccEEEEecCCCCCCCCCC--CCCCeeEEEeCCCCcc
Q 003945 123 GLLKINNVQLL--EGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIE 176 (784)
Q Consensus 123 r~L~l~~~~l~--~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~ 176 (784)
..++.+++.+. ..+..+|.+|+.|++++|.+..+|... .+++|++|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35677777776 666678889999999999999999876 8999999999999765
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.95 E-value=0.014 Score=55.27 Aligned_cols=12 Identities=33% Similarity=0.279 Sum_probs=5.4
Q ss_pred CCCEEecCCCCC
Q 003945 475 SLTKLDLSDCGL 486 (784)
Q Consensus 475 ~L~~L~Ls~~~l 486 (784)
.|++|+|++|.+
T Consensus 99 tL~~L~L~~N~I 110 (197)
T 1pgv_A 99 SLRVLNVESNFL 110 (197)
T ss_dssp SCCEEECCSSBC
T ss_pred ccCeEecCCCcC
Confidence 344444444444
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.11 E-value=0.036 Score=52.35 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=31.2
Q ss_pred ccccCeEeecCCCCCc-----cCcccccCCCCCCEEeccCcCCcc-----cCccccCCCCCCEEecCCCCCc
Q 003945 309 FQCLRNLKLSGCSKLK-----KFPQIVTTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNF 370 (784)
Q Consensus 309 l~~L~~L~L~~~~~~~-----~~~~~~~~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~~~~~ 370 (784)
-+.|+.|+|++++.++ .+.+.+..-+.|+.|+|++|.+.+ +...+..-+.|+.|+|+.|.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 4566667776542221 123344444556666666666551 2233344455555555555543
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.42 E-value=1.2e+02 Score=24.47 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=25.7
Q ss_pred cccCCCCccEEEcCCCCCCCCCCCCCCCCCccEEEecC
Q 003945 181 GIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEG 218 (784)
Q Consensus 181 ~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~ 218 (784)
.|..+.+|+.+.|..+--......|.++.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 36677777777777654333345677778888887766
Done!