BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003946
(784 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SA60|PPR6_ARATH Pentatricopeptide repeat-containing protein At1g03100,
mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2
SV=1
Length = 793
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/713 (69%), Positives = 593/713 (83%), Gaps = 6/713 (0%)
Query: 76 FSSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSF 135
SS+ G+IL+QARDPAKL+ EI+ A++EHR +AW+L+EQHMQM+GFPRK++VN ++ F
Sbjct: 81 ISSISGSILLQARDPAKLNEEIQIAVDEHRCDEAWRLFEQHMQMEGFPRKSVVNNVVVCF 140
Query: 136 VESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATE 195
ESLDS WL+K Y LVEQA+EEGKQ LLEKEPL+YLSL L+K G+ VPASTILRKLV TE
Sbjct: 141 AESLDSNWLQKGYSLVEQAYEEGKQNLLEKEPLLYLSLALAKSGMAVPASTILRKLVETE 200
Query: 196 QYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNT 255
+YP V+AWSA+LAHMSL G+YL+AEL+LEIGYLF + RVDPRKK NAPL+AMKPNT
Sbjct: 201 EYPHVSAWSAVLAHMSLAGSGSYLSAELVLEIGYLFHNNRVDPRKKSNAPLLAMKPNTQV 260
Query: 256 FNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHID 315
N+ALAGCLLF TTRKAEQLLD++P+IGVKAD+NLL+IMAHIYERNGRREELRKLQRHID
Sbjct: 261 LNVALAGCLLFGTTRKAEQLLDMIPKIGVKADANLLVIMAHIYERNGRREELRKLQRHID 320
Query: 316 EAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGV 375
EA NL++ QF QFYNCLL CHLKFGDL SASKMVLEML+R K ARNSL AA+L F+
Sbjct: 321 EACNLNESQFWQFYNCLLMCHLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTAD- 379
Query: 376 NNRTPSEQNVNCTNSV---DLENSGIIENH-ILSYEDFTKDRKFVALEAEVKRVLQTLLG 431
+ R +++ + V D + ++ H ++ Y++F++DRKF+ LEAE K VL LL
Sbjct: 380 DGRLYTKRVSGKGSEVKEHDNPETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGALLA 439
Query: 432 MLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAAL 491
L QVELIT+E G+LQPTE+IY+KL KAFLE+GK KEL FL+KAE E+ VS D++ L
Sbjct: 440 KLHVQVELITSERGVLQPTEEIYVKLAKAFLESGKMKELAKFLLKAEHEDSPVSSDNSML 499
Query: 492 GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARS 551
+VI CISLG LDQAHDLLDEM +AGVR SSVY+SLLKAY N+ REVT+LLRDA+
Sbjct: 500 INVINACISLGMLDQAHDLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRDAQK 559
Query: 552 AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611
AGIQLD+SCYEAL+QS+++Q DT GAL++FKEMKE+KI R G+Q+FE L+KGC N EAG
Sbjct: 560 AGIQLDSSCYEALIQSQVIQNDTHGALNVFKEMKEAKILRGGNQKFEKLLKGCEGNAEAG 619
Query: 612 LMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSM 671
LM+KLL+E++E Q +D GVHDWNNVIHFF KK LMQDAEKALKRMRSLGH PNAQTFHSM
Sbjct: 620 LMSKLLREIREVQSLDAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHSM 679
Query: 672 VTGYAAIGGKYTEVTELWGEMKSFASST-SMNFDEELLDSVLYTFVRGGFFARANEVVAM 730
VTGYAAIG KYTEVTELWGEMKS A++T SM FD+ELLD+VLYTFVRGGFF+RANEVV M
Sbjct: 680 VTGYAAIGSKYTEVTELWGEMKSIAAATSSMKFDQELLDAVLYTFVRGGFFSRANEVVEM 739
Query: 731 MEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLKKREAALGFKKWLGL 783
ME+ MF+DKYKYR LFLKYHKT YKGK PK Q+E+QLKKREA L FKKWLGL
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQLKKREAGLVFKKWLGL 792
>sp|B3H672|PP317_ARATH Pentatricopeptide repeat-containing protein At4g17616
OS=Arabidopsis thaliana GN=At4g17616 PE=2 SV=1
Length = 674
Score = 249 bits (636), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 180/694 (25%), Positives = 328/694 (47%), Gaps = 80/694 (11%)
Query: 93 LSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVE 152
L ++E A+ +HR DAW +++ ++ GFP ++N+ +T S D+ WL KA L
Sbjct: 57 LKKKLETALKDHRVDDAWDVFKDFKRLYGFPESVIMNRFVTVLSYSSDAGWLCKASDLTR 116
Query: 153 QAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSL 212
A ++ +L + L LSL L++ + A +ILR ++ ++ HM
Sbjct: 117 LALKQNPG-MLSGDVLTKLSLSLARAQMVESACSILRIMLEKGYVLTSDVLRLVVMHMVK 175
Query: 213 TAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKA 272
T G LA+ ++++ F + V R ++P +KP+T FN+ L C+ F + K
Sbjct: 176 TEIGTCLASNYLVQVCDRFVEFNVGKRN--SSPGNVVKPDTVLFNLVLGSCVRFGFSLKG 233
Query: 273 EQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCL 332
++L+++M ++ V AD+ ++IM+ IYE NG R+ELRK + HI + ++ F++ L
Sbjct: 234 QELIELMAKVDVVADAYSIVIMSCIYEMNGMRDELRKFKEHIGQVPPQLLGHYQHFFDNL 293
Query: 333 LSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVD 392
LS KF D+ SA ++ L+M + + ++ +G ++ P V
Sbjct: 294 LSLEFKFDDIGSAGRLALDMCK---------SKVLVSVENLGFDSEKPRVLPVG------ 338
Query: 393 LENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEK 452
+HI S K + ++ LG + + + + L T K
Sbjct: 339 -------SHHIRSGLKIHISPKLLQRDSS--------LG-VDTEATFVNYSNSKLGITNK 382
Query: 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLD 512
KLV + EL+ L L VI C+++GWL+ AHD+LD
Sbjct: 383 TLAKLVYGYKRHDNLPELSKLLFSLGGSRL--------CADVIDACVAIGWLEAAHDILD 434
Query: 513 EMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQK 572
+M+ AG + Y +L Y ++ R LL+ AG+ D S E ++ + +K
Sbjct: 435 DMNSAGYPMELATYRMVLSGYYKSKMLRNAEVLLKQMTKAGLITDPS-NEIVVSPETEEK 493
Query: 573 DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG--V 630
D+ +N E L L+QE+ G+++ +
Sbjct: 494 DS-------------------------------ENTE--LRDLLVQEINAGKQMKAPSML 520
Query: 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWG 690
++ N+ +++FCK ++ DA +++ + P Q+F ++ Y+++ G Y E+T +WG
Sbjct: 521 YELNSSLYYFCKAKMQGDALITYRKIPKMKIPPTVQSFWILIDMYSSL-GMYREITIVWG 579
Query: 691 EMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKY 750
++K +S ++ ++LL+ ++ F+RGG+F R E+++ M+E M+ D Y+ +LK
Sbjct: 580 DIKRNIASKNLKTTQDLLEKLVVNFLRGGYFERVMELISYMKENDMYNDLTMYKNEYLKL 639
Query: 751 HKTLYKG-KTPKFQTEAQLKKREAALGFKKWLGL 783
HK LY+ K TEAQ ++ E F+K +G+
Sbjct: 640 HKNLYRTLKASDAVTEAQAQRLEHVKTFRKLVGI 673
>sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein At1g69290
OS=Arabidopsis thaliana GN=At1g69290 PE=2 SV=1
Length = 658
Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 189/336 (56%), Gaps = 12/336 (3%)
Query: 454 YIKLVKAFLEAGKTKELTHFLIKAEK-ENLQVSHDDAALGHVITLCISLGWLDQAHDLLD 512
Y +LVK F+E+ K L +++A+K E+ V D + +I C++LG+ D+AH +L+
Sbjct: 327 YCELVKGFIESKSVKSLAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFSDKAHSILE 386
Query: 513 EM-HLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ 571
EM G VY +LKAY + R E T L+ + S+G+QLD AL+++ +
Sbjct: 387 EMIAQGGGSVGIGVYVPILKAYCKEYRTAEATQLVTEISSSGLQLDVEISNALIEASMTN 446
Query: 572 KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVH 631
+D A LF++M+E+++ + ++ G +N LMA L EV E R++ H
Sbjct: 447 QDFISAFTLFRDMRENRVV-DLKGSYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNSH 505
Query: 632 DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGE 691
DWN++IH FCK ++DA + +RM L + PN QT+ S++ GY + G KY V LW E
Sbjct: 506 DWNSIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVS-GEKYFNVLLLWNE 564
Query: 692 MKSFASSTSM----NFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747
+K SS D L+D+ LY V+GGFF A +VV +E K+F+DK++Y+ F
Sbjct: 565 IKGKISSVEAEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAF 624
Query: 748 LKYHKTLYKGKTPKFQTEAQLKKREAALGFKKWLGL 783
++ HK L + PK + + KK E+ + FK W GL
Sbjct: 625 METHKKL---RLPKLR-KRNYKKMESLVAFKNWAGL 656
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 124/279 (44%), Gaps = 30/279 (10%)
Query: 91 AKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILT--SFVESLD---SKWLE 145
+ + + +++N H +AWK + P K L+N ++T S VE S L+
Sbjct: 59 SSFESTLHDSLNAHYTDEAWKAFRSLTAASSLPEKRLINSLITHLSGVEGSGESISHRLK 118
Query: 146 KAYGLVEQAFEEGKQILLEKEPLIYL--SLGLSKCGLPVPASTILRKLVATEQYPPVTAW 203
+A+ E+ ILLE E + L S+ L+K PA +++ + + P W
Sbjct: 119 RAFASAAYVIEK-DPILLEFETVRTLLESMKLAKAA--GPALALVKCMFKNRYFVPFDLW 175
Query: 204 SAILAHMSLTAPGAYLAAELILEIGYLFQDGRV---DPRKKCNAPLIAMKPNTNTFNIAL 260
+L ++ E G L +V R + L MKP+ N AL
Sbjct: 176 -------------GHLVIDICRENGSLAPFLKVFKESCRISVDEKLEFMKPDLVASNAAL 222
Query: 261 -AGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVN 319
A C E+ AE +++ M +GVK D +A++Y R G RE++ +L+ +D
Sbjct: 223 EACCRQMESLADAENVIESMAVLGVKPDELSFGFLAYLYARKGLREKISELENLMD---G 279
Query: 320 LSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKE 358
R Y+ ++S ++K GDL+S S ++L L+ E
Sbjct: 280 FGFASRRILYSNMISGYVKSGDLDSVSDVILHSLKEGGE 318
>sp|Q9CAA5|PP109_ARATH Pentatricopeptide repeat-containing protein At1g68980,
mitochondrial OS=Arabidopsis thaliana GN=At1g68980 PE=2
SV=1
Length = 619
Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 182/332 (54%), Gaps = 13/332 (3%)
Query: 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH-VITLCISLGWLDQAH 508
+E+ Y +LV+ F+E+ + L +I+A+K + ++G ++ C+ LG+
Sbjct: 295 SEETYCELVRGFIESKSVESLAKLIIEAQKLESMSTDVGGSVGFGIVNACVKLGF--SGK 352
Query: 509 DLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568
+LDE++ G VY +LKAY + R E T L+ + S+G+QLD Y ++++
Sbjct: 353 SILDELNAQGGSGGIGVYVPILKAYCKEGRTSEATQLVTEISSSGLQLDVETYNTMIEAS 412
Query: 569 IVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC 628
+ + D AL LF++M+E+++ + + ++ G +N LMA+ ++EV E R++
Sbjct: 413 MTKHDFLSALTLFRDMRETRVA-DLKRCYLTIMTGLLENQRPELMAEFVEEVMEDPRVEV 471
Query: 629 GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTEL 688
HDWN++IH FCK + DA+ +RM L + PN QT+ S++ GY + KY EV +
Sbjct: 472 KSHDWNSIIHAFCKSGRLGDAKSTFRRMTFLQYEPNNQTYLSLINGYVSC-EKYFEVVVI 530
Query: 689 WGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFL 748
W E K + L D+ L V+GGFF A +V+ +E K+F+DK++Y+ F+
Sbjct: 531 WKEFK----DKKAKLEHALADAFLNALVKGGFFGTALQVIEKCQEMKIFVDKWRYKATFM 586
Query: 749 KYHKTLYKGKTPKFQTEAQLKKREAALGFKKW 780
+ K L + PK + + ++KK E FK W
Sbjct: 587 ETQKNL---RLPKLR-KRKMKKIEFLDAFKNW 614
>sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650,
chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2
SV=1
Length = 778
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 168/704 (23%), Positives = 315/704 (44%), Gaps = 54/704 (7%)
Query: 101 INEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQ 160
+ + +AW Y Q + G T ++++++ + L +A ++ + E +
Sbjct: 92 LRNRKTDEAWAKYVQSTHLPG---PTCLSRLVSQLSYQSKPESLTRAQSILTRLRNERQL 148
Query: 161 ILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAP-GAYL 219
L+ L L++ +K G + A ++++ ++ + P V AW+A +A +S + G
Sbjct: 149 HRLDANSLGLLAMAAAKSGQTLYAVSVIKSMIRSGYLPHVKAWTAAVASLSASGDDGPEE 208
Query: 220 AAELILEIGYLFQDGRVDPRKKCNAPLIAM-KPNTNTFNIALAGCLLFETTRKAEQLLDI 278
+ +L + I RV ++ + L+ +P+T FN L C T K +L +
Sbjct: 209 SIKLFIAITR-----RV--KRFGDQSLVGQSRPDTAAFNAVLNACANLGDTDKYWKLFEE 261
Query: 279 MPRIGVKADSNLLIIMAHIYERNGRREELR-KLQRHIDEAVNLSDIQFRQFYNCLLSCHL 337
M + D +M + R GR+E + L+R ID+ + + + L++ ++
Sbjct: 262 MSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERIIDKGIKVCMTTM----HSLVAAYV 317
Query: 338 KFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSG 397
FGDL +A ++V M +E R L + NA + + E + D E+SG
Sbjct: 318 GFGDLRTAERIVQAM----REKRRDLCKVLRECNAEDLKEKEEEEAEDDEDAFEDDEDSG 373
Query: 398 IIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKL 457
+S E V V + LL + P +IY L
Sbjct: 374 YSARDEVS-------------EEGVVDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYTTL 420
Query: 458 VKAFLEAGKTKELTHFLIKAEKENLQVSH-DDAALGHVITLCISLGWLDQAHDLLDEMHL 516
+K +++ G+ + L +++ + SH D+ V++ ++ G +D+A +L EM
Sbjct: 421 MKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMAR 480
Query: 517 AGVRASSSVYASLLKAYIEANRPREVTALLRD-ARSAGIQLDASCYEALLQSKIVQKDTP 575
GV A+ Y LLK Y + + LLR+ AGI+ D Y ++ I+ D+
Sbjct: 481 MGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSA 540
Query: 576 GALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNN 635
GAL F EM+ I + + L+K A + + L ++ E+ R+ + WN
Sbjct: 541 GALAFFNEMRTRGIAPT-KISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNM 599
Query: 636 VIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMK-- 693
++ +C+ L++DA++ + RM+ G PN T+ S+ G + K + LW E+K
Sbjct: 600 LVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQ-ARKPGDALLLWKEIKER 658
Query: 694 -------------SFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDK 740
S + + DE LLD++ VR FF +A E++A MEE + +K
Sbjct: 659 CAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNK 718
Query: 741 YKYRTLFLKYHKTLYKGK-TPKFQTEAQLKKREAALGFKKWLGL 783
KY+ ++++ H ++ K + + + +++++ AA FK WLGL
Sbjct: 719 TKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGL 762
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 21/307 (6%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT--LCISLGWL 504
QP E Y ++K ++G+T L K E+ +++ DA +I LC G L
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKL---DAVKYSIIIDGLCKD-GSL 263
Query: 505 DQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL 564
D A +L +EM + G +A +Y +L++ + A R + LLRD I D + AL
Sbjct: 264 DNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323
Query: 565 LQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH--EAGLMAKLLQEVKE 622
+ + + A L KEM + I ++ C +N +A M L+ V +
Sbjct: 324 IDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM--VSK 381
Query: 623 GQRIDCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGG 680
G CG + +N +I+ +CK L+ D + ++M G + + T+++++ G+ + G
Sbjct: 382 G----CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL-G 436
Query: 681 KYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDK 740
K EL+ EM S + + LLD + G +A E+ +E+ KM +D
Sbjct: 437 KLEVAKELFQEMVSRRVRPDIVSYKILLDGL----CDNGEPEKALEIFEKIEKSKMELDI 492
Query: 741 YKYRTLF 747
Y +
Sbjct: 493 GIYNIII 499
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 87/437 (19%), Positives = 176/437 (40%), Gaps = 35/437 (8%)
Query: 247 IAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGR-RE 305
+ +P+T TF+ + G L +A +L+D M +G K L + + NG+ +
Sbjct: 136 LGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSD 195
Query: 306 ELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAA 365
+ + R ++ +++ Y +L K G + + +E+L++ +E + L A
Sbjct: 196 AVLLIDRMVETGFQPNEVT----YGPVLKVMCKSG----QTALAMELLRKMEERKIKLDA 247
Query: 366 AMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRV 425
G+ + N N ++++ + I+ Y + + + ++
Sbjct: 248 VKYSIIIDGLCKDGSLDNAFNLFNEMEIKG---FKADIIIYTTLIRGFCYAGRWDDGAKL 304
Query: 426 LQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQ-- 483
L+ M+++++ P + L+ F++ GK +E KE +Q
Sbjct: 305 LRD---MIKRKI----------TPDVVAFSALIDCFVKEGKLREAEEL----HKEMIQRG 347
Query: 484 VSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVT 543
+S D +I LD+A+ +LD M G + + L+ Y +AN +
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407
Query: 544 ALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG 603
L R G+ D Y L+Q A LF+EM ++ R +++L+ G
Sbjct: 408 ELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV-RPDIVSYKILLDG 466
Query: 604 CAQNHEAGLMAKLLQEV-KEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHL 662
N E ++ +++ K +D G+ +N +IH C + DA + G
Sbjct: 467 LCDNGEPEKALEIFEKIEKSKMELDIGI--YNIIIHGMCNASKVDDAWDLFCSLPLKGVK 524
Query: 663 PNAQTFHSMVTGYAAIG 679
P+ +T++ M+ G G
Sbjct: 525 PDVKTYNIMIGGLCKKG 541
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 34/218 (15%)
Query: 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEV 620
Y L+S IV A+ LF+EM S+ PR +F L A+ + L+ L +++
Sbjct: 40 YRERLRSGIVDIKEDDAVDLFQEMTRSR-PRPRLIDFSRLFSVVARTKQYDLVLDLCKQM 98
Query: 621 KEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGG 680
E + I ++ + +I+ C+ R + A A+ ++ LG+ P+ TF +++ G + G
Sbjct: 99 -ELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLC-LEG 156
Query: 681 KYTEVTELWGEMKSFA-------------------------------SSTSMNFDEELLD 709
+ +E EL M T +E
Sbjct: 157 RVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYG 216
Query: 710 SVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747
VL + G A A E++ MEE K+ +D KY +
Sbjct: 217 PVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254
Score = 40.4 bits (93), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 20/241 (8%)
Query: 497 LCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQL 556
LC+ G + +A +L+D M G + + +L+ + + L+ G Q
Sbjct: 152 LCLE-GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQP 210
Query: 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKL 616
+ Y +L+ T A+ L ++M+E KI + + +++ G ++ L
Sbjct: 211 NEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK-YSIIIDGLCKDGSLDNAFNL 269
Query: 617 LQEVK-EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGY 675
E++ +G + D + + +I FC D K L+ M P+ F +++ +
Sbjct: 270 FNEMEIKGFKAD--IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCF 327
Query: 676 AAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGF-----FARANEVVAM 730
GK E EL EM S D+V YT + GF +AN ++ +
Sbjct: 328 VK-EGKLREAEELHKEMIQRGISP---------DTVTYTSLIDGFCKENQLDKANHMLDL 377
Query: 731 M 731
M
Sbjct: 378 M 378
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 4/174 (2%)
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
+++A ++LDEM LAGV A+ Y +++ Y + ++ G+ +D YEA
Sbjct: 640 MEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEA 699
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEV-KE 622
LL++ AL + KEM IPR+ + +L+ G A+ + A L+Q++ KE
Sbjct: 700 LLKACCKSGRMQSALAVTKEMSARNIPRNSFV-YNILIDGWARRGDVWEAADLIQQMKKE 758
Query: 623 GQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA 676
G + D +H + + I K M A + ++ M +LG PN +T+ +++ G+A
Sbjct: 759 GVKPD--IHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWA 810
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 6/227 (2%)
Query: 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDE 513
Y +V F +AG + ++ +A++ + + + + G +I +++A L+ E
Sbjct: 382 YSVIVGGFSKAGHAEAADYWFDEAKR--IHKTLNASIYGKIIYAHCQTCNMERAEALVRE 439
Query: 514 MHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD 573
M G+ A ++Y +++ Y ++ + + + G Y L+
Sbjct: 440 MEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGK 499
Query: 574 TPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE-AGLMAKLLQEVKEGQRIDCGVHD 632
AL + + MKE + + + + M++ G + + A A VKEG + D V
Sbjct: 500 ISKALEVSRVMKEEGV-KHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPD--VIL 556
Query: 633 WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
+NN+I FC M A + +K M+ L H P +TF ++ GYA G
Sbjct: 557 YNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSG 603
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 6/190 (3%)
Query: 492 GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARS 551
G +I L +G + +A ++ M GV+ + Y+ ++ +++ A+ D
Sbjct: 488 GCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVK 547
Query: 552 AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611
G++ D Y ++ + + A+ KEM++ + R + F ++ G A+ +G
Sbjct: 548 EGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLR-HRPTTRTFMPIIHGYAK---SG 603
Query: 612 LMAKLLQEVKEGQRIDC--GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669
M + L+ +R C VH +N +I+ +KR M+ A + L M G N T+
Sbjct: 604 DMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYT 663
Query: 670 SMVTGYAAIG 679
++ GYA++G
Sbjct: 664 KIMQGYASVG 673
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLD 512
+Y L+ + G E + + +KE V D I+ C G +++A ++
Sbjct: 731 VYNILIDGWARRGDVWEAADLIQQMKKEG--VKPDIHTYTSFISACSKAGDMNRATQTIE 788
Query: 513 EMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQK 572
EM GV+ + Y +L+K + A+ P + + + ++ GI+ D + Y LL S + +
Sbjct: 789 EMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRA 848
Query: 573 DT------PGALHLFKEMKES 587
G + + KEM E+
Sbjct: 849 SIAEAYIYSGVMTICKEMVEA 869
Score = 40.0 bits (92), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 8/181 (4%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G + +A + + M G+ +S +Y SL+ AY E + +R + GI++ Y
Sbjct: 323 GDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTY 382
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621
++ A + F E K + +++ C Q L++E++
Sbjct: 383 SVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHC-QTCNMERAEALVREME 441
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKAL---KRMRSLGHLPNAQTFHSMVTGYAAI 678
E + ID + ++ ++ + ++ D +K L KR++ G P T+ ++ Y +
Sbjct: 442 E-EGIDAPIAIYHTMMDGYT---MVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKV 497
Query: 679 G 679
G
Sbjct: 498 G 498
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 132/298 (44%), Gaps = 19/298 (6%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT--LCISLGWL 504
QP E Y ++ ++G+T L K E+ N+++ DA +I LC G L
Sbjct: 224 FQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL---DAVKYSIIIDGLCKD-GSL 279
Query: 505 DQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL 564
D A +L +EM + G +A Y +L+ + A R + LLRD I + + L
Sbjct: 280 DNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVL 339
Query: 565 LQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQNH--EAGLMAKLLQEVK 621
+ S + + A L KEM + I + L+ G C +N EA M L+ +
Sbjct: 340 IDSFVKEGKLREADQLLKEMMQRGIA-PNTITYNSLIDGFCKENRLEEAIQMVDLM--IS 396
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGK 681
+G D + +N +I+ +CK + D + + M G + N T++++V G+ GK
Sbjct: 397 KG--CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ-SGK 453
Query: 682 YTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFID 739
+L+ EM S + + LLD + G +A E+ +E+ KM +D
Sbjct: 454 LEVAKKLFQEMVSRRVRPDIVSYKILLDGL----CDNGELEKALEIFGKIEKSKMELD 507
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 3/180 (1%)
Query: 497 LCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQL 556
LC++ G + A L+D M G + + Y +L ++ + LLR I+L
Sbjct: 203 LCLN-GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 261
Query: 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKL 616
DA Y ++ A +LF EM E K ++ + L+ G AKL
Sbjct: 262 DAVKYSIIIDGLCKDGSLDNAFNLFNEM-EIKGFKADIITYNTLIGGFCNAGRWDDGAKL 320
Query: 617 LQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA 676
L+++ + ++I V ++ +I F K+ +++A++ LK M G PN T++S++ G+
Sbjct: 321 LRDMIK-RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFC 379
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 87/192 (45%), Gaps = 5/192 (2%)
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
+D +L EM L GV A++ Y +L++ + ++ + L ++ S ++ D Y+
Sbjct: 419 IDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKI 478
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK-E 622
LL + AL +F ++++SK+ + +++ G + L + +
Sbjct: 479 LLDGLCDNGELEKALEIFGKIEKSKMELD-IGIYMIIIHGMCNASKVDDAWDLFCSLPLK 537
Query: 623 GQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKY 682
G ++D +N +I C+K + A+ ++M GH P+ T++ ++ +
Sbjct: 538 GVKLD--ARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLG-DDDA 594
Query: 683 TEVTELWGEMKS 694
T EL EMKS
Sbjct: 595 TTAAELIEEMKS 606
Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Query: 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEV 620
Y L S +V A+ LF++M +S+ P +F L A+ + L+ L +++
Sbjct: 56 YRDKLSSGLVGIKADDAVDLFRDMIQSR-PLPTVIDFNRLFSAIAKTKQYELVLALCKQM 114
Query: 621 KEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGG 680
E + I ++ + +I+ FC+ R + A + ++ LG+ P+ F++++ G +
Sbjct: 115 -ESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGL-CLEC 172
Query: 681 KYTEVTELWGEM 692
+ +E EL M
Sbjct: 173 RVSEALELVDRM 184
Score = 39.7 bits (91), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 633 WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692
+N +++ C + + +A + + RM +GH P T +++V G + GK ++ L M
Sbjct: 161 FNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLC-LNGKVSDAVVLIDRM 219
Query: 693 KSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747
T +E VL + G A A E++ MEE + +D KY +
Sbjct: 220 ----VETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIII 270
Score = 39.7 bits (91), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 5/188 (2%)
Query: 506 QAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALL 565
+A +L+D M G + + +L+ + + L+ G Q + Y +L
Sbjct: 176 EALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVL 235
Query: 566 QSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK-EGQ 624
T A+ L ++M+E I + + +++ G ++ L E++ +G
Sbjct: 236 NVMCKSGQTALAMELLRKMEERNIKLDAVK-YSIIIDGLCKDGSLDNAFNLFNEMEIKGF 294
Query: 625 RIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTE 684
+ D + +N +I FC D K L+ M PN TF ++ + GK E
Sbjct: 295 KAD--IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVK-EGKLRE 351
Query: 685 VTELWGEM 692
+L EM
Sbjct: 352 ADQLLKEM 359
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 133/308 (43%), Gaps = 14/308 (4%)
Query: 442 TEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISL 501
E+G QP Y ++ ++G+T L K E+ N+++ D +I
Sbjct: 220 VEYGC-QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL--DAVKYSIIIDGLCKH 276
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G LD A +L +EM + G+ + Y L+ + A R + LLRD I + +
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 336
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH--EAGLMAKLLQE 619
L+ S + + A L KEM I ++ C +NH +A M L+
Sbjct: 337 SVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM-- 394
Query: 620 VKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
V +G D + +N +I+ +CK + D + ++M G + + T+++++ G+ +
Sbjct: 395 VSKG--CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL- 451
Query: 680 GKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFID 739
GK EL+ EM S ++ + LLD + G +A E+ +E+ KM +D
Sbjct: 452 GKLNVAKELFQEMVSRKVPPNIVTYKILLDGL----CDNGESEKALEIFEKIEKSKMELD 507
Query: 740 KYKYRTLF 747
Y +
Sbjct: 508 IGIYNIII 515
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 104/502 (20%), Positives = 198/502 (39%), Gaps = 71/502 (14%)
Query: 247 IAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREE 306
+ +PNT TF+ + G L +A +L+D M +G K D + + + +G+ E
Sbjct: 152 LGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAE 211
Query: 307 LRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAA 366
L ID+ V Y +L+ K G + + +E+L++ +E L A
Sbjct: 212 AMLL---IDKMVEYGCQPNAVTYGPVLNVMCKSGQ----TALAMELLRKMEERNIKLDAV 264
Query: 367 MLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVL 426
G+ + N N ++E GI N I++Y + ++L
Sbjct: 265 KYSIIIDGLCKHGSLDNAFNLFN--EMEMKGITTN-IITYNILIGGFCNAGRWDDGAKLL 321
Query: 427 QTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSH 486
+ M+++++ P + L+ +F++ GK +E AE+ + ++ H
Sbjct: 322 RD---MIKRKI----------NPNVVTFSVLIDSFVKEGKLRE-------AEELHKEMIH 361
Query: 487 DDAALGHVITLCISLGW-----LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPRE 541
A + + G+ LD+A+ ++D M G + + L+ Y +ANR +
Sbjct: 362 RGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDD 421
Query: 542 VTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLV 601
L R G+ D Y L+Q A LF+EM K+P +++L+
Sbjct: 422 GLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP-PNIVTYKILL 480
Query: 602 KGCAQNHEA-------------------GLMAKLLQEVKEGQRID------C-------- 628
G N E+ G+ ++ + ++D C
Sbjct: 481 DGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 540
Query: 629 -GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTE 687
GV +N +I CKK + +AE ++M GH P+ T++ ++ + G T+ +
Sbjct: 541 PGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLG-DGDATKSVK 599
Query: 688 LWGEMKSFASSTSMNFDEELLD 709
L E+K S + + ++D
Sbjct: 600 LIEELKRCGFSVDASTIKMVID 621
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
Query: 537 NRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQE 596
N P E++ SA + S Y L+S +V A+ LF++M S+ P +
Sbjct: 33 NCPNELSFCCERGFSAFSDRNLS-YRERLRSGLVDIKADDAIDLFRDMIHSR-PLPTVID 90
Query: 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRM 656
F L A+ + L+ L +++ E + I ++ + +I+ FC+ R + A A+ ++
Sbjct: 91 FSRLFSAIAKTKQYDLVLALCKQM-ELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKI 149
Query: 657 RSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692
LG+ PN TF +++ G + G+ +E EL M
Sbjct: 150 IKLGYEPNTITFSTLINGL-CLEGRVSEALELVDRM 184
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 16/298 (5%)
Query: 442 TEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISL 501
E+G QP E Y ++ ++G + K E+ N++ S ++ + +LC
Sbjct: 202 VEYG-FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSI-VIDSLCKD- 258
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G D A L +EM + G++A Y+SL+ + + +LR+ I D +
Sbjct: 259 GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF 318
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQN--HEAGLMAKLLQ 618
AL+ + + A L+ EM I + L+ G C +N HEA M L+
Sbjct: 319 SALIDVFVKEGKLLEAKELYNEMITRGIAPD-TITYNSLIDGFCKENCLHEANQMFDLM- 376
Query: 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAI 678
V +G D + ++ +I+ +CK + + D + + + S G +PN T++++V G+
Sbjct: 377 -VSKGCEPD--IVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ- 432
Query: 679 GGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKM 736
GK EL+ EM S S+ LLD + G +A E+ M++ +M
Sbjct: 433 SGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL----CDNGELNKALEIFEKMQKSRM 486
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 7/251 (2%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G + +A L+D M R ++L+ R E L+ G Q D Y
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621
+L ++ AL LF++M+E I S Q + +++ ++ L E+
Sbjct: 214 GPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ-YSIVIDSLCKDGSFDDALSLFNEM- 271
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGK 681
E + I V ++++I C D K L+ M +P+ TF +++ + GK
Sbjct: 272 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK-EGK 330
Query: 682 YTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKY 741
E EL+ EM + + D +S++ F + AN++ +M D
Sbjct: 331 LLEAKELYNEMITRGIAP----DTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIV 386
Query: 742 KYRTLFLKYHK 752
Y L Y K
Sbjct: 387 TYSILINSYCK 397
Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEV 620
Y+ L++ IV A+ LF+ M +S+ P +F L A+ + L+ + +
Sbjct: 38 YKERLRNGIVDIKVNDAIDLFESMIQSR-PLPTPIDFNRLCSAVARTKQYDLVLGFCKGM 96
Query: 621 KEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGG 680
E I+ ++ +I+ +C+K+ + A L R LG+ P+ TF ++V G+ + G
Sbjct: 97 -ELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGF-CLEG 154
Query: 681 KYTEVTELWGEM 692
+ +E L M
Sbjct: 155 RVSEAVALVDRM 166
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 27/222 (12%)
Query: 139 LDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSL--GLSKCGLPVPASTILRKLVATEQ 196
+DS + ++ F E + ++ + + Y SL GL G + +LR+++
Sbjct: 252 IDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI 311
Query: 197 YPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLI--AMKPNTN 254
P V +SA+ I ++G++ K+ +I + P+T
Sbjct: 312 IPDVVTFSAL--------------------IDVFVKEGKLLEAKELYNEMITRGIAPDTI 351
Query: 255 TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHI 314
T+N + G +A Q+ D+M G + D I+ + Y + R ++ +L R I
Sbjct: 352 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 411
Query: 315 DEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRA 356
I YN L+ + G LN+A ++ EM+ R
Sbjct: 412 SSK---GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 144/330 (43%), Gaps = 44/330 (13%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQ 506
L P + Y L++ + ++ L++ +K N+ +S G V+ S G LD
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISP--YTYGTVVKGMCSSGDLDG 435
Query: 507 AHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQ 566
A++++ EM +G R + +Y +L+K +++ +R + +L++ + GI D CY +L+
Sbjct: 436 AYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLII 495
Query: 567 SKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI 626
K A EM E+ + + + + G + E K ++E++E
Sbjct: 496 GLSKAKRMDEARSFLVEMVENGLKPNAFT-YGAFISGYIEASEFASADKYVKEMRE---- 550
Query: 627 DCGVHD----WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKY 682
CGV +I+ +CKK + +A A + M G L +A+T+ ++ G K
Sbjct: 551 -CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFK-NDKV 608
Query: 683 TEVTELWGEMKS-------FASSTSMN--------------FDEELLDS-----VLYTFV 716
+ E++ EM+ F+ +N FDE + + ++Y +
Sbjct: 609 DDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNML 668
Query: 717 RGGFFARANEVVAMMEEGKMFIDKYKYRTL 746
GG F R+ E+ E+ K +D+ + L
Sbjct: 669 LGG-FCRSGEI----EKAKELLDEMSVKGL 693
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 6/251 (2%)
Query: 443 EHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLG 502
E GI P Y L+ +A + E FL++ + L+ + G I+ I
Sbjct: 480 EQGI-APDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLK--PNAFTYGAFISGYIEAS 536
Query: 503 WLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYE 562
A + EM GV + + L+ Y + + E + R GI DA Y
Sbjct: 537 EFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYT 596
Query: 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622
L+ A +F+EM+ I + +L+ G ++ + + E+ E
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFS-YGVLINGFSKLGNMQKASSIFDEMVE 655
Query: 623 GQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKY 682
+ + V +N ++ FC+ ++ A++ L M G PNA T+ +++ GY G
Sbjct: 656 -EGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCK-SGDL 713
Query: 683 TEVTELWGEMK 693
E L+ EMK
Sbjct: 714 AEAFRLFDEMK 724
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 106/233 (45%), Gaps = 10/233 (4%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G +++A +LLDEM + G+ ++ Y +++ Y ++ E L + + G+ D+ Y
Sbjct: 676 GEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVY 735
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621
L+ D A+ +F K K S F L+ + + L ++L +
Sbjct: 736 TTLVDGCCRLNDVERAITIFGTNK--KGCASSTAPFNALINWVFKFGKTELKTEVLNRLM 793
Query: 622 EGQRIDCGVHD---WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAI 678
+G G + +N +I + CK+ ++ A++ +M++ +P T+ S++ GY +
Sbjct: 794 DGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKM 853
Query: 679 GGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMM 731
G+ E+ ++ E A + + D + ++ F++ G +A +V M
Sbjct: 854 -GRRAEMFPVFDE----AIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQM 901
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 84/223 (37%), Gaps = 34/223 (15%)
Query: 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE- 619
Y+ L+ K A L EM + H + +L+ G + A L+ E
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHT-YSLLIDGLLKGRNADAAKGLVHEM 338
Query: 620 VKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA--- 676
V G I ++D I K+ +M+ A+ M + G +P AQ + S++ GY
Sbjct: 339 VSHGINIKPYMYDC--CICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREK 396
Query: 677 ----------------AIGGKYTEVTELWGEMKSFASSTSMNFDEELLDS------VLY- 713
+ YT T + G S + N +E++ S V+Y
Sbjct: 397 NVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456
Query: 714 ----TFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHK 752
TF++ F A V+ M+E + D + Y +L + K
Sbjct: 457 TLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 73.2 bits (178), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 128/302 (42%), Gaps = 15/302 (4%)
Query: 449 PTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAH 508
P + + LV +AG K + +E D VI+ LG + +A
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD--PDVYTYNSVISGLCKLGEVKEAV 350
Query: 509 DLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568
++LD+M ++ Y +L+ + N+ E T L R S GI D + +L+Q
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Query: 569 IVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQNHEAGLMAKLLQEVKEGQRID 627
+ ++ A+ LF+EM+ SK + ML+ C++ G + + L +K+ +
Sbjct: 411 CLTRNHRVAMELFEEMR-SKGCEPDEFTYNMLIDSLCSK----GKLDEALNMLKQMELSG 465
Query: 628 CG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEV 685
C V +N +I FCK ++AE+ M G N+ T+++++ G + +
Sbjct: 466 CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK-SRRVEDA 524
Query: 686 TELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRT 745
+L +M D+ +S+L F RGG +A ++V M D Y T
Sbjct: 525 AQLMDQMIMEGQKP----DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGT 580
Query: 746 LF 747
L
Sbjct: 581 LI 582
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 83/180 (46%), Gaps = 2/180 (1%)
Query: 513 EMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQK 572
+M + G++ S + L+KA A++ R +L D S G+ D + ++Q I +
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG 238
Query: 573 DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHD 632
D GAL + ++M E S + ++V G + +QE+ +
Sbjct: 239 DLDGALRIREQMVEFGCSWS-NVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYT 297
Query: 633 WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692
+N +++ CK ++ A + + M G+ P+ T++S+++G + G+ E E+ +M
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKL-GEVKEAVEVLDQM 356
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G + +A D++ M G Y +L+ +A R + LLR + GI L Y
Sbjct: 554 GDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAY 613
Query: 562 EALLQSKIVQKDTPGALHLFKEMKE 586
++Q ++ T A++LF+EM E
Sbjct: 614 NPVIQGLFRKRKTTEAINLFREMLE 638
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 110/243 (45%), Gaps = 11/243 (4%)
Query: 443 EHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT-LCISL 501
E G+ P Y ++ + G+TK+ F + E VS + +I LC +
Sbjct: 261 EDGVF-PNLYTYNCVMNQLCKDGRTKD--AFQVFDEMRERGVSCNIVTYNTLIGGLCREM 317
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
L++A+ ++D+M G+ + Y +L+ + + + +L RD +S G+ Y
Sbjct: 318 K-LNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTY 376
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ--NHEAGLMAKLLQE 619
L+ + DT GA + KEM+E I S + +L+ A+ N E + +L E
Sbjct: 377 NILVSGFCRKGDTSGAAKMVKEMEERGIKPS-KVTYTILIDTFARSDNMEKAIQLRLSME 435
Query: 620 VKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
+ G D VH ++ +IH FC K M +A + K M PN +++M+ GY G
Sbjct: 436 -ELGLVPD--VHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEG 492
Query: 680 GKY 682
Y
Sbjct: 493 SSY 495
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/271 (19%), Positives = 120/271 (44%), Gaps = 7/271 (2%)
Query: 483 QVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREV 542
+V D + G +I C G ++++ DLL E+ G + +Y +L+ + +
Sbjct: 158 KVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKA 217
Query: 543 TALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602
L + G+ + Y L+ ++++M+E + + + + ++
Sbjct: 218 KDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYT-YNCVMN 276
Query: 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHL 662
++ ++ E++E + + C + +N +I C++ + +A K + +M+S G
Sbjct: 277 QLCKDGRTKDAFQVFDEMRE-RGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGIN 335
Query: 663 PNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFA 722
PN T+++++ G+ + GK + L ++KS S S+ + ++ F R G +
Sbjct: 336 PNLITYNTLIDGFCGV-GKLGKALSLCRDLKSRGLSPSL----VTYNILVSGFCRKGDTS 390
Query: 723 RANEVVAMMEEGKMFIDKYKYRTLFLKYHKT 753
A ++V MEE + K Y L + ++
Sbjct: 391 GAAKMVKEMEERGIKPSKVTYTILIDTFARS 421
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G A ++ EM G++ S Y L+ + ++ + L G+ D Y
Sbjct: 387 GDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTY 446
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621
L+ ++ A LFK M E K + ++ G + + KLL+E++
Sbjct: 447 SVLIHGFCIKGQMNEASRLFKSMVE-KNCEPNEVIYNTMILGYCKEGSSYRALKLLKEME 505
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA 665
E + + V + +I CK+R ++AE+ +++M G P+
Sbjct: 506 E-KELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPST 548
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 133/336 (39%), Gaps = 39/336 (11%)
Query: 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQA 507
+PT Y ++ F + G L++ K + ++ D +IT C +A
Sbjct: 240 KPTLITYNVILNVFGKMGTPWNKITSLVEKMKSD-GIAPDAYTYNTLITCCKRGSLHQEA 298
Query: 508 HDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567
+ +EM AG Y +LL Y +++RP+E +L + G Y +L+ +
Sbjct: 299 AQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISA 358
Query: 568 KIVQKDTPGALHLFKEMKE--------------SKIPRSGHQEF------EMLVKGCAQN 607
A+ L +M E S R+G E EM GC N
Sbjct: 359 YARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPN 418
Query: 608 --------HEAGLMAKLLQEVKEGQRID-CGVH----DWNNVIHFFCKKRLMQDAEKALK 654
G K + +K I+ CG+ WN ++ F + + + K
Sbjct: 419 ICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFK 478
Query: 655 RMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYT 714
M+ G +P +TF+++++ Y+ G + + ++ M + D ++VL
Sbjct: 479 EMKRAGFVPERETFNTLISAYSRC-GSFEQAMTVYRRMLDAGVTP----DLSTYNTVLAA 533
Query: 715 FVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKY 750
RGG + ++ +V+A ME+G+ ++ Y +L Y
Sbjct: 534 LARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAY 569
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 90/491 (18%), Positives = 182/491 (37%), Gaps = 79/491 (16%)
Query: 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGR-REE 306
+ P+ T+N + C ++A Q+ + M G D + +Y ++ R +E
Sbjct: 274 GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEA 333
Query: 307 LRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAA 366
++ L + + S + YN L+S + + G L+ A ++ +M ++ +
Sbjct: 334 MKVLNEMVLNGFSPSIVT----YNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389
Query: 367 MLP-FNAVGVNNRTPSEQNVNCTNSV--DLENSGIIENHILSYEDFTKDRKFVALEAEVK 423
+L F G V S+ ++ N+G N I ++ F K E+
Sbjct: 390 LLSGFERAG---------KVESAMSIFEEMRNAGCKPN-ICTFNAFIKMYGNRGKFTEMM 439
Query: 424 RVL---------------QTLLGMLQKQVELITTEHGILQ--------PTEKIYIKLVKA 460
++ TLL + Q + + G+ + P + + L+ A
Sbjct: 440 KIFDEINVCGLSPDIVTWNTLLAVF-GQNGMDSEVSGVFKEMKRAGFVPERETFNTLISA 498
Query: 461 FLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR 520
+ G ++ + + V+ D + V+ G +Q+ +L EM +
Sbjct: 499 YSRCGSFEQA--MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCK 556
Query: 521 ASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHL 580
+ Y SLL AY + +L + S I+ A + L+ P A
Sbjct: 557 PNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERA 616
Query: 581 FKEMKE-----------SKIPRSGHQEFEMLVKGC-----------------------AQ 606
F E+KE S + G ++ G ++
Sbjct: 617 FSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSR 676
Query: 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666
+ + G ++L+E+ + I + +N VI+ +C+ M+DA + MR+ G +P+
Sbjct: 677 SADFGKSEEILREIL-AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVI 735
Query: 667 TFHSMVTGYAA 677
T+++ + YAA
Sbjct: 736 TYNTFIGSYAA 746
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 93/249 (37%), Gaps = 6/249 (2%)
Query: 434 QKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH 493
Q + L E G +P E Y L+ A+ GK L H L AE+ V A L
Sbjct: 542 QSEKVLAEMEDGRCKPNELTYCSLLHAYAN-GKEIGLMHSL--AEEVYSGVIEPRAVLLK 598
Query: 494 VITL-CISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSA 552
+ L C L +A E+ G + S++ Y + +L +
Sbjct: 599 TLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKER 658
Query: 553 GIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGL 612
G + Y +L+ D + + +E+ I + + ++ +N
Sbjct: 659 GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGI-KPDIISYNTVIYAYCRNTRMRD 717
Query: 613 MAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMV 672
+++ E++ I V +N I + + ++A ++ M G PN T++S+V
Sbjct: 718 ASRIFSEMRNSG-IVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIV 776
Query: 673 TGYAAIGGK 681
GY + K
Sbjct: 777 DGYCKLNRK 785
Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 67/348 (19%), Positives = 130/348 (37%), Gaps = 52/348 (14%)
Query: 151 VEQAFEEGKQ--ILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILA 208
V F+E K+ + E+E L S+CG A T+ R+++ P ++ ++ +LA
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLA 532
Query: 209 HMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLI--------------------- 247
+L G + +E +L +DGR P + L+
Sbjct: 533 --ALARGGMWEQSEKVLA---EMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYS 587
Query: 248 -AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREE 306
++P + C + +AE+ + G D L M IY GRR+
Sbjct: 588 GVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIY---GRRQM 644
Query: 307 LRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAA 366
+ K +D YN L+ H + D + +++ E+L AK + + +
Sbjct: 645 VAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREIL--AKGIKPDIISY 702
Query: 367 MLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVL 426
A N R + ++ NSGI+ + +++Y F ++ E V+
Sbjct: 703 NTVIYAYCRNTRMRDASRIFS----EMRNSGIVPD-VITYNTFIGSYAADSMFEEAIGVV 757
Query: 427 QTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFL 474
+ ++ +HG +P + Y +V + + + E F+
Sbjct: 758 RYMI------------KHGC-RPNQNTYNSIVDGYCKLNRKDEAKLFV 792
Score = 37.0 bits (84), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 8/144 (5%)
Query: 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669
A M LQE +G +D V+ + ++I F ++A K+M G P T++
Sbjct: 192 AANMFNGLQE--DGFSLD--VYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYN 247
Query: 670 SMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVA 729
++ + +G + ++T L +MK S + D ++++ RG A +V
Sbjct: 248 VILNVFGKMGTPWNKITSLVEKMK----SDGIAPDAYTYNTLITCCKRGSLHQEAAQVFE 303
Query: 730 MMEEGKMFIDKYKYRTLFLKYHKT 753
M+ DK Y L Y K+
Sbjct: 304 EMKAAGFSYDKVTYNALLDVYGKS 327
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 133/316 (42%), Gaps = 17/316 (5%)
Query: 435 KQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQ---VSHDDAAL 491
KQV + E + P Y K+V + + G +E ++ K + L ++ +
Sbjct: 203 KQVYMEMLEDKVC-PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIM 261
Query: 492 GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARS 551
G+ LD A + +EM L G R + Y L+ A R E L +
Sbjct: 262 GYC-----QRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKD 316
Query: 552 AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611
Y L++S + AL+L KEM+E+ I + H ++ C+Q
Sbjct: 317 DECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEK 376
Query: 612 LMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSM 671
L Q +++G + V +N +I+ +CK+ +++DA ++ M S PN +T++ +
Sbjct: 377 ARELLGQMLEKGLMPN--VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNEL 434
Query: 672 VTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMM 731
+ GY + V + G + + D +S++ R G F A ++++M
Sbjct: 435 IKGYCK-----SNVHKAMGVLNKMLERKVLP-DVVTYNSLIDGQCRSGNFDSAYRLLSLM 488
Query: 732 EEGKMFIDKYKYRTLF 747
+ + D++ Y ++
Sbjct: 489 NDRGLVPDQWTYTSMI 504
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 106/286 (37%), Gaps = 43/286 (15%)
Query: 431 GMLQKQVELIT-TEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDA 489
GM++ V+++ E L P + Y +L+K + ++ K + E+ +V D
Sbjct: 407 GMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLER---KVLPDVV 463
Query: 490 ALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDA 549
+I G D A+ LL M+ G+ Y S++ + ++ R E L
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523
Query: 550 RSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQNH 608
G+ + Y AL+ A HL E SK F L+ G CA
Sbjct: 524 EQKGVNPNVVMYTALIDGYCKAGKVDEA-HLMLEKMLSKNCLPNSLTFNALIHGLCADGK 582
Query: 609 --EAGLM---------------------------------AKLLQEVKEGQRIDCGVHDW 633
EA L+ ++ Q + G + D H +
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPD--AHTY 640
Query: 634 NNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
I +C++ + DAE + +MR G P+ T+ S++ GY +G
Sbjct: 641 TTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLG 686
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 93/253 (36%), Gaps = 7/253 (2%)
Query: 501 LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASC 560
G +D+ + EM V + Y ++ Y + E + AG+ D
Sbjct: 196 FGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFT 255
Query: 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEV 620
Y +L+ +KD A +F EM K R + L+ G L ++
Sbjct: 256 YTSLIMGYCQRKDLDSAFKVFNEMP-LKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM 314
Query: 621 KEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGG 680
K+ + V + +I C +A +K M G PN T+ ++ +
Sbjct: 315 KDDECFP-TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCS-QC 372
Query: 681 KYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDK 740
K+ + EL G+M ++ L++ + + G A +VV +ME K+ +
Sbjct: 373 KFEKARELLGQMLEKGLMPNVITYNALING----YCKRGMIEDAVDVVELMESRKLSPNT 428
Query: 741 YKYRTLFLKYHKT 753
Y L Y K+
Sbjct: 429 RTYNELIKGYCKS 441
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 82/200 (41%), Gaps = 23/200 (11%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G L A D++ +M GV Y+SL+K Y + + +L+ R G + +
Sbjct: 651 GRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTF 710
Query: 562 EALLQ--------------------SKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLV 601
+L++ S +++ DT + L ++M E + + + +E L+
Sbjct: 711 LSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDT--VVELLEKMVEHSVTPNA-KSYEKLI 767
Query: 602 KGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661
G + + K+ ++ + I +N ++ CK + +A K + M +GH
Sbjct: 768 LGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGH 827
Query: 662 LPNAQTFHSMVTGYAAIGGK 681
LP ++ ++ G G K
Sbjct: 828 LPQLESCKVLICGLYKKGEK 847
Score = 33.1 bits (74), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 41/232 (17%), Positives = 97/232 (41%), Gaps = 7/232 (3%)
Query: 449 PTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVS-HDDAALGHVITLCISLGWLDQA 507
PT + Y L+K+ + + E + + + E+ ++ + H L + +LC S ++A
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL--IDSLC-SQCKFEKA 377
Query: 508 HDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567
+LL +M G+ + Y +L+ Y + + ++ S + + Y L++
Sbjct: 378 RELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKG 437
Query: 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRID 627
+ + A+ + +M E K+ + L+ G ++ +LL + + +
Sbjct: 438 -YCKSNVHKAMGVLNKMLERKV-LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495
Query: 628 CGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
+ ++I CK + +++A + G PN + +++ GY G
Sbjct: 496 -DQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAG 546
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 101/468 (21%), Positives = 183/468 (39%), Gaps = 109/468 (23%)
Query: 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRK 309
+PN T+ + + G T A LL+ M ++AD ++I I + +
Sbjct: 222 QPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEAD---VVIFNTIIDSLCK------ 272
Query: 310 LQRHIDEAVNLSDIQFRQF-----------YNCLLSCHLKFGDLNSASKMVLEMLQRAKE 358
RH+D+A+NL F++ Y+ L+SC +G + AS+++ +M+++
Sbjct: 273 -YRHVDDALNL----FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK--- 324
Query: 359 ARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVAL 418
+ ++ FNA+ + F K+ KFV
Sbjct: 325 ---KINPNLVTFNAL--------------------------------IDAFVKEGKFV-- 347
Query: 419 EAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFL---EAGKTKELTHFLI 475
EAE + M+++ ++ P Y LV F K K++ F++
Sbjct: 348 EAE-----KLYDDMIKRSID----------PDIFTYNSLVNGFCMHDRLDKAKQMFEFMV 392
Query: 476 KAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE 535
+ V+++ G C S ++ +L EM G+ + Y +L++
Sbjct: 393 SKDCFPDVVTYNTLIKG----FCKS-KRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 447
Query: 536 ANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQ 595
+ + S G+ D Y LL AL +F M++S+I +
Sbjct: 448 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 507
Query: 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG---------VHDWNNVIHFFCKKRLM 646
M+ C +AG +V +G + C V +N +I C KRL+
Sbjct: 508 YTTMIEGMC----KAG-------KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 556
Query: 647 QDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694
Q+A LK+M+ G LPN+ T+++++ + G K EL EM+S
Sbjct: 557 QEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAAS-AELIREMRS 603
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEV 620
Y +L++ + A+ LF M +S+ P EF L+ A+ + ++ L +++
Sbjct: 53 YREILRNGLHDMKLDDAIGLFGGMVKSR-PLPSIVEFNKLLSAIAKMKKFDVVISLGEKM 111
Query: 621 KEGQRIDC--GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAI 678
QR++ G++ +N +I+ FC++ + A L +M LG+ P+ T S++ GY
Sbjct: 112 ---QRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH- 167
Query: 679 GGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFF--ARANEVVAMME 732
G + ++ L +M D++ +T + G F +A+E VA+++
Sbjct: 168 GKRISDAVALVDQMVEMGYRP---------DTITFTTLIHGLFLHNKASEAVALVD 214
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 39/87 (44%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G +D DL + L GV+ + Y +++ +E ALL+ + G ++ Y
Sbjct: 519 GKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTY 578
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESK 588
L+++ + D + L +EM+ +
Sbjct: 579 NTLIRAHLRDGDKAASAELIREMRSCR 605
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 123/309 (39%), Gaps = 16/309 (5%)
Query: 442 TEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISL 501
E+G QP Y +V +G T L K E+ N V D +I
Sbjct: 185 VENGC-QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN--VKADVFTYSTIIDSLCRD 241
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G +D A L EM G+++S Y SL++ +A + + LL+D S I + +
Sbjct: 242 GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITF 301
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQNH--EAGLMAKLLQ 618
LL + + A L+KEM I + L+ G C QN EA M L+
Sbjct: 302 NVLLDVFVKEGKLQEANELYKEMITRGIS-PNIITYNTLMDGYCMQNRLSEANNMLDLMV 360
Query: 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAI 678
K I + ++I +C + + D K + + G + NA T+ +V G+
Sbjct: 361 RNKCSPDI----VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ- 415
Query: 679 GGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFI 738
GK EL+ EM S + LLD + G +A E+ +++ KM +
Sbjct: 416 SGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL----CDNGKLEKALEIFEDLQKSKMDL 471
Query: 739 DKYKYRTLF 747
Y T+
Sbjct: 472 GIVMYTTII 480
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 7/188 (3%)
Query: 560 CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE 619
C+ L+S IV A+ LF+EM S+ P +F A+ + L+ ++
Sbjct: 55 CFRERLRSGIVDIKKDDAIALFQEMIRSR-PLPSLVDFSRFFSAIARTKQFNLVLDFCKQ 113
Query: 620 VKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
+ E I ++ N +I+ FC+ A L ++ LG+ P+ TF++++ G +
Sbjct: 114 L-ELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGL-FLE 171
Query: 680 GKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFID 739
GK +E L M D +S++ R G + A +++ MEE + D
Sbjct: 172 GKVSEAVVLVDRMVENGCQP----DVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKAD 227
Query: 740 KYKYRTLF 747
+ Y T+
Sbjct: 228 VFTYSTII 235
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 4/177 (2%)
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
L +A+++LD M + SL+K Y R + + R+ G+ +A Y
Sbjct: 349 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408
Query: 564 LLQSKIVQKDTPGALHLFKEM-KESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622
L+Q A LF+EM +P + +L+ G N + ++ +++++
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDV--MTYGILLDGLCDNGKLEKALEIFEDLQK 466
Query: 623 GQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
++D G+ + +I CK ++DA + G PN T+ M++G G
Sbjct: 467 -SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKG 522
Score = 46.6 bits (109), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 94/209 (44%), Gaps = 3/209 (1%)
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
+D + + G+ A++ Y+ L++ + ++ + + L ++ S G+ D Y
Sbjct: 384 VDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGI 443
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEG 623
LL AL +F+++++SK+ G + +++G + + L +
Sbjct: 444 LLDGLCDNGKLEKALEIFEDLQKSKMDL-GIVMYTTIIEGMCKGGKVEDAWNLFCSL-PC 501
Query: 624 QRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYT 683
+ + V + +I CKK + +A L++M G+ PN T+++++ + G T
Sbjct: 502 KGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLR-DGDLT 560
Query: 684 EVTELWGEMKSFASSTSMNFDEELLDSVL 712
+L EMKS S + + ++D +L
Sbjct: 561 ASAKLIEEMKSCGFSADASSIKMVIDMLL 589
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 12/168 (7%)
Query: 442 TEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISL 501
HG+L P Y L+ + GK ++ E+LQ S D + T+ +
Sbjct: 430 VSHGVL-PDVMTYGILLDGLCDNGKLEKALEIF-----EDLQKSKMDLGIVMYTTIIEGM 483
Query: 502 ---GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDA 558
G ++ A +L + GV+ + Y ++ + E LLR G +
Sbjct: 484 CKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPND 543
Query: 559 SCYEALLQSKIVQKDTPGALHLFKEMKE---SKIPRSGHQEFEMLVKG 603
Y L+++ + D + L +EMK S S +ML+ G
Sbjct: 544 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSG 591
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 106/252 (42%), Gaps = 15/252 (5%)
Query: 447 LQPTEKIYIKLVKAFLEAGK---TKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW 503
++P + L+ AF++ GK KEL + +I+ + V D G +I G
Sbjct: 254 IEPNVITFTALIDAFVKVGKLMEAKELYNVMIQ-----MSVYPDVFTYGSLINGLCMYGL 308
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
LD+A + M G + +Y +L+ + ++ R + + + G+ + Y
Sbjct: 309 LDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTV 368
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG--CAQNHEAGLMAKLLQEVK 621
L+Q + A +F +M + P + + +L+ G C E LM + E
Sbjct: 369 LIQGYCLVGRPDVAQEVFNQMSSRRAP-PDIRTYNVLLDGLCCNGKVEKALM---IFEYM 424
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGK 681
+ +D + + +I CK ++DA + S G PN T+ +M++G+ G
Sbjct: 425 RKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCR-RGL 483
Query: 682 YTEVTELWGEMK 693
E L+ +MK
Sbjct: 484 IHEADSLFKKMK 495
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 13/213 (6%)
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
L+ A +L ++M G R + Y +L+ E R + LLRD I+ + + A
Sbjct: 204 LNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTA 263
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQE---FEMLVKGCAQNHEAGLMAKLLQEV 620
L+ + + G L KE+ I S + + + L+ G GL+ + Q
Sbjct: 264 LIDAFV----KVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCM---YGLLDEARQMF 316
Query: 621 KEGQRIDCGVHD--WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAI 678
+R C ++ + +IH FCK + ++D K M G + N T+ ++ GY +
Sbjct: 317 YLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376
Query: 679 GGKYTEVTELWGEMKSFASSTSMNFDEELLDSV 711
G+ E++ +M S + + LLD +
Sbjct: 377 -GRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGL 408
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 11/245 (4%)
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQ-LDASCYE 562
+ A DL M + S + LL + NR V +L + GI L +C
Sbjct: 64 FNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNI 123
Query: 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQNHEAGLMAKLLQEVK 621
+ + + + L K MK P F L+ G C N +A Q +
Sbjct: 124 VMHCVCLSSQPCRASCFLGKMMKLGFEP--DLVTFTSLLNGYCHWNRIEDAIALFDQILG 181
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGK 681
G + + V + +I CK R + A + +M + G PN T++++VTG IG
Sbjct: 182 MGFKPN--VVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRW 239
Query: 682 YTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKY 741
L MK + F L+D+ FV+ G A E+ +M + ++ D +
Sbjct: 240 GDAAWLLRDMMKRRIEPNVITF-TALIDA----FVKVGKLMEAKELYNVMIQMSVYPDVF 294
Query: 742 KYRTL 746
Y +L
Sbjct: 295 TYGSL 299
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 14/205 (6%)
Query: 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFK 582
S V++ L+ Y +A + + RS G++ LL S + Q+ T +FK
Sbjct: 133 SHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFK 192
Query: 583 EMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK 642
+M + + + H + +LV C+++ + KLL E++E + + + +N +I +CK
Sbjct: 193 KMVKLGVVANIHV-YNVLVHACSKSGDPEKAEKLLSEMEE-KGVFPDIFTYNTLISVYCK 250
Query: 643 KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMN 702
K + +A RM G PN T++S + G++ G+ E T L+ E+K
Sbjct: 251 KSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSR-EGRMREATRLFREIK--------- 300
Query: 703 FDEELLDSVLYTFVRGGFFARANEV 727
D+ + V YT + G + R N++
Sbjct: 301 -DDVTANHVTYTTLIDG-YCRMNDI 323
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 3/181 (1%)
Query: 498 CISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLD 557
C G ++A LL EM GV Y +L+ Y + + E ++ +G+ +
Sbjct: 213 CSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPN 272
Query: 558 ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLL 617
Y + + + A LF+E+K+ + H + L+ G + ++ A L
Sbjct: 273 IVTYNSFIHGFSREGRMREATRLFREIKDD--VTANHVTYTTLIDGYCRMNDID-EALRL 329
Query: 618 QEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA 677
+EV E + GV +N+++ C+ +++A + L M P+ T ++++ Y
Sbjct: 330 REVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCK 389
Query: 678 I 678
I
Sbjct: 390 I 390
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 93/256 (36%), Gaps = 51/256 (19%)
Query: 443 EHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLG 502
E + P Y + F G+ +E T + + DD HV + G
Sbjct: 265 ERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIK--------DDVTANHVTYTTLIDG 316
Query: 503 W-----LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLD 557
+ +D+A L + M G Y S+L+ E R RE LL + I+ D
Sbjct: 317 YCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPD 376
Query: 558 ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLL 617
L+ + +D A+ + K+M ES
Sbjct: 377 NITCNTLINAYCKIEDMVSAVKVKKKMIES------------------------------ 406
Query: 618 QEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA 677
G ++D ++ + +IH FCK +++A++ L M G P T+ +V G+
Sbjct: 407 -----GLKLD--MYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYN 459
Query: 678 IGGKYTEVTELWGEMK 693
K E+T+L E +
Sbjct: 460 -QNKQDEITKLLEEFE 474
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 89/447 (19%), Positives = 166/447 (37%), Gaps = 79/447 (17%)
Query: 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREE- 306
+ PN +N + +AE L D M +IG++ + I+ ++ R G+ +
Sbjct: 362 GVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTA 421
Query: 307 LRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAA 366
L L +D + LS YN L++ H KFGD+++A + EM+ + E +
Sbjct: 422 LSFLGEMVDTGLKLSVYP----YNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTS 477
Query: 367 MLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVL 426
++ + G I + Y + T K +A L
Sbjct: 478 LMGGYC----------------------SKGKINKALRLYHEMTG--KGIAPSIYTFTTL 513
Query: 427 QTLL---GMLQKQVELIT-TEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIK-AEKEN 481
+ L G+++ V+L ++P Y +++ + E G + FL + EK
Sbjct: 514 LSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGI 573
Query: 482 LQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPRE 541
+ ++ L H LC++ G +A +D +H + Y LL + + E
Sbjct: 574 VPDTYSYRPLIH--GLCLT-GQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEE 630
Query: 542 VTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI------------ 589
++ ++ G+ LD CY L+ + KD L KEM + +
Sbjct: 631 ALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMID 690
Query: 590 PRSGHQEFE--------MLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC 641
+S +F+ M+ +GC N + VI+ C
Sbjct: 691 AKSKTGDFKEAFGIWDLMINEGCVPNEVT----------------------YTAVINGLC 728
Query: 642 KKRLMQDAEKALKRMRSLGHLPNAQTF 668
K + +AE +M+ + +PN T+
Sbjct: 729 KAGFVNEAEVLCSKMQPVSSVPNQVTY 755
Score = 41.6 bits (96), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 94/236 (39%), Gaps = 10/236 (4%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVI-TLCISLGWLD 505
P+E LV+ + GK +E + + + + VS + +I +LC +
Sbjct: 328 FSPSEAAVSSLVEGLRKRGKIEEALNLVKRVV--DFGVSPNLFVYNALIDSLCKGRKF-H 384
Query: 506 QAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALL 565
+A L D M G+R + Y+ L+ + + + L + G++L Y +L+
Sbjct: 385 EAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLI 444
Query: 566 QSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE--G 623
D A EM K+ + ++ C++ G + K L+ E G
Sbjct: 445 NGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSK----GKINKALRLYHEMTG 500
Query: 624 QRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
+ I ++ + ++ + L++DA K M PN T++ M+ GY G
Sbjct: 501 KGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEG 556
Score = 37.4 bits (85), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 12/205 (5%)
Query: 492 GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARS 551
G + +LC L L +A +++ M G + Y L+ + + E + +D
Sbjct: 232 GVIRSLC-ELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAG 290
Query: 552 AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611
++ D Y L+ ++ L + EM + S LV+G + G
Sbjct: 291 KDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPS-EAAVSSLVEGLRKR---G 346
Query: 612 LMAKLLQEVKEGQRIDCGVHD----WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQT 667
+ + L VK + +D GV +N +I CK R +AE RM +G PN T
Sbjct: 347 KIEEALNLVK--RVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVT 404
Query: 668 FHSMVTGYAAIGGKYTEVTELWGEM 692
+ ++ + GK GEM
Sbjct: 405 YSILIDMFCR-RGKLDTALSFLGEM 428
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 96/464 (20%), Positives = 186/464 (40%), Gaps = 71/464 (15%)
Query: 247 IAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAH-IYERNGRRE 305
+ +P+ T + L G + A L+D M +G K D+ + H ++ N E
Sbjct: 147 LGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASE 206
Query: 306 ELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAA 365
+ + + + + + N L K GD++ A L +L + + AR + A
Sbjct: 207 AVALVDQMVQRGCQPDLVTYGTVVNGLC----KRGDIDLA----LNLLNKMEAAR--IKA 256
Query: 366 AMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRV 425
++ FN + + V ++E GI N +++Y ++ R+
Sbjct: 257 NVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPN-VVTYNSLINCLCNYGRWSDASRL 315
Query: 426 LQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEK---ENL 482
L ML+K++ P + L+ AF + GK L++AEK E +
Sbjct: 316 LSN---MLEKKI----------NPNVVTFNALIDAFFKEGK-------LVEAEKLHEEMI 355
Query: 483 QVSHDDAALGHVITL---CISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRP 539
Q S D + + + + C+ LD+A + M + Y +L+ + + R
Sbjct: 356 QRSIDPDTITYNLLINGFCMH-NRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRV 414
Query: 540 REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEM 599
+ L R+ G+ + Y ++Q D A +FK+M +++P + + +
Sbjct: 415 EDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVP-TDIMTYSI 473
Query: 600 LVKG-CAQN--HEAGLMAKLLQ----------------------EVKEGQRIDCG----- 629
L+ G C+ A ++ K LQ +V E + C
Sbjct: 474 LLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKP 533
Query: 630 -VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMV 672
V +N +I C KRL+Q+A+ ++M+ G LPN+ T+++++
Sbjct: 534 DVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLI 577
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 112/274 (40%), Gaps = 14/274 (5%)
Query: 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQA 507
+P + L+ K E + + + Q D G V+ G +D A
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQ--PDLVTYGTVVNGLCKRGDIDLA 242
Query: 508 HDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567
+LL++M A ++A+ ++ +++ + + L + + GI+ + Y +L+
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302
Query: 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRID 627
A L M E KI F L+ + + KL +E+ + + ID
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKI-NPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQ-RSID 360
Query: 628 CGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTE 687
+N +I+ FC + +A++ K M S LPN QT+++++ G+ + + E
Sbjct: 361 PDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKC-KRVEDGVE 419
Query: 688 LWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFF 721
L+ EM + ++V YT + GFF
Sbjct: 420 LFREMSQRGL---------VGNTVTYTTIIQGFF 444
Score = 39.7 bits (91), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 567 SKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI 626
S I++ D A+ LF +M +S+ P EF L+ A+ ++ L+ L ++++ I
Sbjct: 59 SDIIKVD--DAVDLFGDMVKSR-PFPSIVEFNKLLSAVAKMNKFELVISLGEQMQT-LGI 114
Query: 627 DCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVT 686
++ ++ I+ FC++ + A L +M LG+ P+ T S++ GY + ++
Sbjct: 115 SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCH-SKRISDAV 173
Query: 687 ELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFF--ARANEVVAMMEE 733
L +M M + D+ +T + G F +A+E VA++++
Sbjct: 174 ALVDQM------VEMGYKP---DTFTFTTLIHGLFLHNKASEAVALVDQ 213
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 108/509 (21%), Positives = 189/509 (37%), Gaps = 92/509 (18%)
Query: 89 DPAKLSAEIENAINEHRYGDAWKLYEQHMQM----DGFPRKTLVNKILTSFVESLDSKWL 144
D LS+ + + R DA L +Q ++M D F TL++ + L +K
Sbjct: 152 DIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLF------LHNKAS 205
Query: 145 EKAYGLVEQAFEEGKQILLEKEPLIYLSL--GLSKCGLPVPASTILRKLVATEQYPPVTA 202
E A LV+Q + G Q + + Y ++ GL K G A +L K+ A V
Sbjct: 206 E-AVALVDQMVQRGCQ----PDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI 260
Query: 203 WSAILAHMSLTAPGAYLAAELILE----------------IGYLFQDGRVDPRKKCNAPL 246
++ I+ + +A +L E I L GR + + +
Sbjct: 261 FNTIIDSLC-KYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNM 319
Query: 247 IAMK--PNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRR 304
+ K PN TFN + +AE+L + M + + D+ ++ + + + R
Sbjct: 320 LEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRL 379
Query: 305 EELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARN--- 361
+E +++ + + L +IQ YN L++ K + ++ EM QR
Sbjct: 380 DEAKQMFKFMVSKDCLPNIQT---YNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTY 436
Query: 362 -----------SLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFT 410
+A + F + V+NR P+ D+ I+ + + SY
Sbjct: 437 TTIIQGFFQAGDCDSAQMVFKQM-VSNRVPT----------DIMTYSILLHGLCSYGKL- 484
Query: 411 KDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKEL 470
D V + LQK E I IY +++ +AGK E
Sbjct: 485 -DTALV------------IFKYLQKS----EMELNIF-----IYNTMIEGMCKAGKVGEA 522
Query: 471 THFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530
+L + D +I+ S L +A DL +M G +S Y +L+
Sbjct: 523 WDLFC-----SLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLI 577
Query: 531 KAYIEANRPREVTALLRDARSAGIQLDAS 559
+A + L+++ RS+G DAS
Sbjct: 578 RANLRDCDRAASAELIKEMRSSGFVGDAS 606
>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3
SV=2
Length = 768
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 15/197 (7%)
Query: 501 LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASC 560
LG++D A LLDEM + G++ + SLL Y ++ A+L+ + AG++ S
Sbjct: 168 LGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSS 227
Query: 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH--EAGLM--AKL 616
+LLQ+ PG L L K + I R+ +++ V+ + + G + A++
Sbjct: 228 ISSLLQAVA----EPGHLKLGKAI-HGYILRN-QLWYDVYVETTLIDMYIKTGYLPYARM 281
Query: 617 LQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA 676
+ ++ + + I WN+++ L++DAE + RM G P+A T++S+ +GYA
Sbjct: 282 VFDMMDAKNIVA----WNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYA 337
Query: 677 AIGGKYTEVTELWGEMK 693
+ GK + ++ G+MK
Sbjct: 338 TL-GKPEKALDVIGKMK 353
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 104/262 (39%), Gaps = 43/262 (16%)
Query: 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALL 546
DD A ++ + + G ++A +L EM +G +A S LL + +E A
Sbjct: 53 DDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLL----QVCSNKEGFAEG 108
Query: 547 RDARSAGIQLDASCYEALLQSKIVQKDTPGALHL----FKEMKESKIPRSGHQEFEMLVK 602
R ++L ++ S IV G L L F MK+ + S + K
Sbjct: 109 RQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLS-SWNSILSSYTK 167
Query: 603 GCAQNHEAGLMAKLLQEVKEGQRIDCG----VHDWNNVIHFFCKKRLMQDAEKALKRMRS 658
+ GL+ ++ E+ CG + WN+++ + K L +DA LKRM+
Sbjct: 168 LGYVDDAIGLLDEM--EI-------CGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQI 218
Query: 659 LGHLPNAQTFHSMVTGYAAIG----GK----YTEVTELWGEMKSFASSTSMNFDEELLDS 710
G P+ + S++ A G GK Y +LW +D + +
Sbjct: 219 AGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLW-------------YDVYVETT 265
Query: 711 VLYTFVRGGFFARANEVVAMME 732
++ +++ G+ A V MM+
Sbjct: 266 LIDMYIKTGYLPYARMVFDMMD 287
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 127/622 (20%), Positives = 235/622 (37%), Gaps = 72/622 (11%)
Query: 122 FPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSL----GLSK 177
FP KT N +LTS V + + + +A+ +V + P +YL K
Sbjct: 236 FPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVS----------PDVYLFTTAINAFCK 285
Query: 178 CGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTA--PGAYLAAELILEIGY------ 229
G A + K+ P V ++ ++ + + A++ E ++E G
Sbjct: 286 GGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLIT 345
Query: 230 --LFQDGRVDPRKKCNAPLI-------AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMP 280
+ G ++ +A + PN +N + + + KA ++ D+M
Sbjct: 346 YSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV 405
Query: 281 RIGVKADSNLLIIMAHIYERNGRREEL-RKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKF 339
G+ S+ + Y +NG+ + R L+ + N++ F CLL HL F
Sbjct: 406 SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI-CLLCSHLMF 464
Query: 340 GDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSE---QNVNCTNSVDLENS 396
+SA + V EML R L ++ + E Q +N VD S
Sbjct: 465 ---DSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTS 521
Query: 397 -----GIIENHILSYEDFTKDRKFVALEAEVKRV-LQTLLGMLQKQVELI--------TT 442
G+ E L E F ++ + + RV TL+ + +L
Sbjct: 522 NALLHGLCEAGKLD-EAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMV 580
Query: 443 EHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLG 502
+ G L+P Y L+ K +E F ++ + D +I C
Sbjct: 581 KRG-LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGML--PDVYTYSVMIDGCCKAE 637
Query: 503 WLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYE 562
++ + DEM V+ ++ VY L++AY + R L D + GI +++ Y
Sbjct: 638 RTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYT 697
Query: 563 ALLQSKIVQKDTPGALHLFKEMK-ESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621
+L++ + A LF+EM+ E P H + L+ G + + + LL+E+
Sbjct: 698 SLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFH--YTALIDGYGKLGQMVKVECLLREM- 754
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGG- 680
+ + + +I + + + +A + L MR G +P++ T+ + GY GG
Sbjct: 755 HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGV 814
Query: 681 ----------KYTEVTELWGEM 692
Y + E W ++
Sbjct: 815 LEAFKGSDEENYAAIIEGWNKL 836
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 98/270 (36%), Gaps = 36/270 (13%)
Query: 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL 516
L+ EAGK E F I+ E D + +I+ C LD+A LDEM
Sbjct: 524 LLHGLCEAGKLDE--AFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK 581
Query: 517 AGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPG 576
G++ + Y+ L+ N+ E D + G+ D Y ++ + T
Sbjct: 582 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEE 641
Query: 577 ALHLFKEMKESKIP--------------RSGHQEF------EMLVKGCAQNHEA------ 610
F EM + RSG +M KG + N
Sbjct: 642 GQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIK 701
Query: 611 GLM-------AKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP 663
G+ AKLL E + ++ V + +I + K M E L+ M S P
Sbjct: 702 GMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP 761
Query: 664 NAQTFHSMVTGYAAIGGKYTEVTELWGEMK 693
N T+ M+ GYA G TE + L EM+
Sbjct: 762 NKITYTVMIGGYAR-DGNVTEASRLLNEMR 790
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 11/280 (3%)
Query: 478 EKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN 537
+ +NL +SH+ I L A +L +M G S SLL + N
Sbjct: 100 QMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGN 159
Query: 538 RPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEF 597
R E AL+ G Q D + L+ A+ L + M K + +
Sbjct: 160 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMV-VKGCQPDLVTY 218
Query: 598 EMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657
++ G + E L LL ++++G +I+ V +N +I CK + M DA +M
Sbjct: 219 GAVINGLCKRGEPDLALNLLNKMEKG-KIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME 277
Query: 658 SLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVR 717
+ G P+ T++ +++ G++++ + L +M ++N D ++++ FV+
Sbjct: 278 TKGIKPDVFTYNPLISCLCNY-GRWSDASRLLSDM----LEKNINPDLVFFNALIDAFVK 332
Query: 718 GGFFARANEVVAMMEEGK-MFIDKYKYRTL---FLKYHKT 753
G A ++ M + K F D Y TL F KY +
Sbjct: 333 EGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRV 372
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 94/470 (20%), Positives = 185/470 (39%), Gaps = 65/470 (13%)
Query: 251 PNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAH-IYERNGRREELRK 309
P+ T N L G +A L+D M +G + D+ + H +++ N E +
Sbjct: 143 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 202
Query: 310 LQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLP 369
++R + + + + N L C DL L +L + ++ + + A ++
Sbjct: 203 VERMVVKGCQPDLVTYGAVINGL--CKRGEPDL------ALNLLNKMEKGK--IEADVVI 252
Query: 370 FNAV--GVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQ 427
+N + G+ + + N +E GI + + +Y ++ R+L
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNK--METKGI-KPDVFTYNPLISCLCNYGRWSDASRLLS 309
Query: 428 TLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEK---ENLQV 484
ML+K + P + L+ AF++ GK L++AEK E ++
Sbjct: 310 D---MLEKNI----------NPDLVFFNALIDAFVKEGK-------LVEAEKLYDEMVKS 349
Query: 485 SH---DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPRE 541
H D A +I +++ ++ EM G+ ++ Y +L+ + +A
Sbjct: 350 KHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 409
Query: 542 VTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLV 601
+ + S G+ D Y LL + AL +F+ M++ + M+
Sbjct: 410 AQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIE 469
Query: 602 KGCAQNHEAGLMAKLLQEVKEGQRIDCG---------VHDWNNVIHFFCKKRLMQDAEKA 652
C +AG +V++G + C V + ++ FC+K L ++A+
Sbjct: 470 ALC----KAG-------KVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADAL 518
Query: 653 LKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS--FASSTS 700
M+ G LPN+ T+++++ G + EL EM+S FA S
Sbjct: 519 FVEMKEDGPLPNSGTYNTLIRARLRDGDEAAS-AELIKEMRSCGFAGDAS 567
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 17/196 (8%)
Query: 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFE 598
PR T L + AG D C E L + + A+ LF +M +S+ P EF
Sbjct: 24 PR--TTLCWERSFAGASSD-DCRENLSRKVLQDLKLDDAIGLFGDMVKSR-PFPSIVEFS 79
Query: 599 MLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658
L+ A+ ++ L+ L +++ + I ++ ++ I++FC++ + A L +M
Sbjct: 80 KLLSAIAKMNKFDLVISLGEQM-QNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMK 138
Query: 659 LGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRG 718
LG+ P+ T +S++ G+ G + +E L +M M + D+V +T +
Sbjct: 139 LGYGPSIVTLNSLLNGFCH-GNRISEAVALVDQM------VEMGYQP---DTVTFTTLVH 188
Query: 719 GFFA--RANEVVAMME 732
G F +A+E VA++E
Sbjct: 189 GLFQHNKASEAVALVE 204
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 1/178 (0%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G L +A L + M G R + ++Y L+ + +A AL + G++ D Y
Sbjct: 905 GRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTY 964
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621
L+ + LH FKE+KES + + +++ G ++H L E+K
Sbjct: 965 SVLVDCLCMVGRVDEGLHYFKELKESGL-NPDVVCYNLIINGLGKSHRLEEALVLFNEMK 1023
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
+ I ++ +N++I ++++A K ++ G PN TF++++ GY+ G
Sbjct: 1024 TSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSG 1081
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 103/266 (38%), Gaps = 13/266 (4%)
Query: 493 HVITLCISL----GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRD 548
+ T+CI + G +++A+++L M G Y L+ A A + +
Sbjct: 259 YTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEK 318
Query: 549 ARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEM-KESKIPRSGHQEFEMLVKGCAQN 607
++ + D Y LL +D + EM K+ +P F +LV +
Sbjct: 319 MKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDV--VTFTILVDALCKA 376
Query: 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQT 667
G L +V Q I +H +N +I + + DA + M SLG P A T
Sbjct: 377 GNFGEAFDTL-DVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYT 435
Query: 668 FHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEV 727
+ + Y G + + E + +MK+ + ++ ++ LY+ + G A ++
Sbjct: 436 YIVFIDYYGKSGDSVSAL-ETFEKMKTKGIAPNI----VACNASLYSLAKAGRDREAKQI 490
Query: 728 VAMMEEGKMFIDKYKYRTLFLKYHKT 753
+++ + D Y + Y K
Sbjct: 491 FYGLKDIGLVPDSVTYNMMMKCYSKV 516
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 40/191 (20%)
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEG 623
L+Q +I+++DT L +FK + VKG + L ++++E
Sbjct: 143 LMQKRIIKRDTNTYLTIFKSLS---------------VKGGLKQAPYAL-----RKMREF 182
Query: 624 QRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYT 683
+ + +N +IH K R +A + +RM G P+ QT+ S++ G GK
Sbjct: 183 GFV-LNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGL----GKRR 237
Query: 684 EVTELWGEMKSFASSTSMNFDEELLDSVLYTFV-------RGGFFARANEVVAMMEEGKM 736
++ + G +K + L +YTF R G A E++ M++
Sbjct: 238 DIDSVMGLLKEMETLG--------LKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGC 289
Query: 737 FIDKYKYRTLF 747
D Y L
Sbjct: 290 GPDVVTYTVLI 300
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 2/178 (1%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G L+ A +LL+EM G+ A Y +LL + R + +LRD I D +
Sbjct: 190 GELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTF 249
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621
AL+ + Q + A L+KEM +S + + + ++ G H AK ++
Sbjct: 250 TALIDVFVKQGNLDEAQELYKEMIQSSVD-PNNVTYNSIINGLCM-HGRLYDAKKTFDLM 307
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
+ V +N +I FCK R++ + K +RM G + T+++++ GY +G
Sbjct: 308 ASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVG 365
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 103/266 (38%), Gaps = 11/266 (4%)
Query: 447 LQPTEKIYIKLVKAFLEAG---KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW 503
+ P + L+ F++ G + +EL +I++ + V+++ G LC+ G
Sbjct: 242 INPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIING----LCMH-GR 296
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
L A D M G + Y +L+ + + E L + G D Y
Sbjct: 297 LYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNT 356
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEG 623
L+ AL +F M ++ +L C + K +++E
Sbjct: 357 LIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKF-DDMRES 415
Query: 624 QRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYT 683
++ G+ +N +IH CK ++ A + R+ G P+A+T+ M+ G G
Sbjct: 416 EKY-IGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCK-NGPRR 473
Query: 684 EVTELWGEMKSFASSTSMNFDEELLD 709
E EL MK MN +++ L+
Sbjct: 474 EADELIRRMKEEGIICQMNAEDDHLE 499
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 74/374 (19%), Positives = 143/374 (38%), Gaps = 56/374 (14%)
Query: 448 QPTEKI--YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLD 505
QP I + +L+ A + + + +F K E +SHD + +I L
Sbjct: 66 QPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYG--ISHDLYSFTILIHCFCRCSRLS 123
Query: 506 QAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALL 565
A +L +M G S + SLL + NR + +L+ +G + + Y L+
Sbjct: 124 FALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLI 183
Query: 566 QSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE------ 619
+ AL L EM E K + + L+ G + A++L++
Sbjct: 184 DGLCKNGELNIALELLNEM-EKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSI 242
Query: 620 --------------VKEGQ--------------RIDCGVHDWNNVIHFFCKKRLMQDAEK 651
VK+G +D +N++I+ C + DA+K
Sbjct: 243 NPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKK 302
Query: 652 ALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELL--D 709
M S G PN T++++++G+ K+ V E MK F + F+ ++ +
Sbjct: 303 TFDLMASKGCFPNVVTYNTLISGFC----KFRMVDE---GMKLFQRMSCEGFNADIFTYN 355
Query: 710 SVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLK 769
++++ + + G A ++ M ++ D + H L G + E+ L
Sbjct: 356 TLIHGYCQVGKLRVALDIFCWMVSRRVTPD--------IITHCILLHGLCVNGEIESALV 407
Query: 770 KREAALGFKKWLGL 783
K + +K++G+
Sbjct: 408 KFDDMRESEKYIGI 421
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 136/328 (41%), Gaps = 30/328 (9%)
Query: 449 PTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAH 508
P Y L+ + AGK ++ KE + +D +V+T+ +G + + H
Sbjct: 404 PNAVTYNCLIDGYCRAGK--------LETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHH 455
Query: 509 DL------LDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYE 562
L +M GV+ + Y +L+ A + + AG DA Y
Sbjct: 456 GLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYY 515
Query: 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK-GCAQNHEAGLMAKLLQEVK 621
AL+ + A+ + +++KE + ML+ C +N+ + L K
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLD-LLAYNMLIGLFCDKNNAEKVYEMLTDMEK 574
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGK 681
EG++ D +N +I FF K + + E+ +++MR G P T+ +++ Y ++G
Sbjct: 575 EGKKPDSIT--YNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVG-- 630
Query: 682 YTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKY 741
E+ E K + +N + + + ++ F + G F +A +++ EE KM + +
Sbjct: 631 --ELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQA---LSLKEEMKMKMVRP 685
Query: 742 KYRTLFLKYHKTLYKGKTPKFQTEAQLK 769
T + L+K K Q E LK
Sbjct: 686 NVET-----YNALFKCLNEKTQGETLLK 708
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 12/184 (6%)
Query: 518 GVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGA 577
GV +S + + + R +L D L+A + ALL D
Sbjct: 254 GVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRM 313
Query: 578 LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG-------V 630
L +M E KI R +L+ ++ ++ ++++ G+R D G +
Sbjct: 314 NDLVLKMDEVKI-RPDVVTLGILINTLCKSRRVDEALEVFEQMR-GKRTDDGNVIKADSI 371
Query: 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGH-LPNAQTFHSMVTGYAAIGGKYTEVTELW 689
H +N +I CK +++AE+ L RM+ +PNA T++ ++ GY GK E+
Sbjct: 372 H-FNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCR-AGKLETAKEVV 429
Query: 690 GEMK 693
MK
Sbjct: 430 SRMK 433
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 136/328 (41%), Gaps = 30/328 (9%)
Query: 449 PTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAH 508
P Y L+ + AGK ++ KE + +D +V+T+ +G + + H
Sbjct: 404 PNAVTYNCLIDGYCRAGK--------LETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHH 455
Query: 509 DL------LDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYE 562
L +M GV+ + Y +L+ A + + AG DA Y
Sbjct: 456 GLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYY 515
Query: 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK-GCAQNHEAGLMAKLLQEVK 621
AL+ + A+ + +++KE + ML+ C +N+ + L K
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLD-LLAYNMLIGLFCDKNNTEKVYEMLTDMEK 574
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGK 681
EG++ D +N +I FF K + + E+ +++MR G P T+ +++ Y ++G
Sbjct: 575 EGKKPDSIT--YNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVG-- 630
Query: 682 YTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKY 741
E+ E K + +N + + + ++ F + G F +A +++ EE KM + +
Sbjct: 631 --ELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQA---LSLKEEMKMKMVRP 685
Query: 742 KYRTLFLKYHKTLYKGKTPKFQTEAQLK 769
T + L+K K Q E LK
Sbjct: 686 NVET-----YNALFKCLNEKTQGETLLK 708
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 12/184 (6%)
Query: 518 GVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGA 577
GV +S + + + R +L D L+A + ALL D
Sbjct: 254 GVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRM 313
Query: 578 LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG-------V 630
L +M E KI R +L+ ++ ++ ++++ G+R D G +
Sbjct: 314 NDLVLKMDEVKI-RPDVVTLGILINTLCKSRRVDEALEVFEKMR-GKRTDDGNVIKADSI 371
Query: 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHL-PNAQTFHSMVTGYAAIGGKYTEVTELW 689
H +N +I CK +++AE+ L RM+ PNA T++ ++ GY GK E+
Sbjct: 372 H-FNTLIDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCR-AGKLETAKEVV 429
Query: 690 GEMK 693
MK
Sbjct: 430 SRMK 433
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 110/513 (21%), Positives = 193/513 (37%), Gaps = 77/513 (15%)
Query: 251 PNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKL 310
P+ +++ + G F K +L+++M R G+K +S I I R +L +
Sbjct: 279 PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNS---YIYGSIIGLLCRICKLAEA 335
Query: 311 QRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPF 370
+ E + + Y L+ K GD+ +ASK EM R
Sbjct: 336 EEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR--------------- 380
Query: 371 NAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLL 430
+ TP S + ++E L +E F K
Sbjct: 381 ------DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG------------------ 416
Query: 431 GMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKE---LTHFLIKAEKENLQVSHD 487
L+P + +L+ + +AG K+ + + +I+A V++
Sbjct: 417 ----------------LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYT 460
Query: 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLR 547
G LC G LD A++LL EM G++ + Y S++ ++ E L+
Sbjct: 461 TLIDG----LCKE-GDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVG 515
Query: 548 DARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607
+ +AG+ D Y L+ + + A + KEM K + F +L+ G +
Sbjct: 516 EFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEML-GKGLQPTIVTFNVLMNGFCLH 574
Query: 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQT 667
KLL + + I +N+++ +C + ++ A K M S G P+ +T
Sbjct: 575 GMLEDGEKLLNWML-AKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKT 633
Query: 668 FHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEV 727
+ ++V G+ E L+ EMK S S++ L+ F++ F A EV
Sbjct: 634 YENLVKGHCK-ARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKG----FLKRKKFLEAREV 688
Query: 728 VAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTP 760
M + DK +F + T YKGK P
Sbjct: 689 FDQMRREGLAADK----EIFDFFSDTKYKGKRP 717
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 110/292 (37%), Gaps = 11/292 (3%)
Query: 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS 522
+ G+ KE H L+ E + + D + V+ G LD+ L++ M G++ +
Sbjct: 258 QLGRIKEAHHLLLLMELKGY--TPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPN 315
Query: 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFK 582
S +Y S++ + E + GI D Y L+ + D A F
Sbjct: 316 SYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFY 375
Query: 583 EMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEV-KEGQRIDCGVHDWNNVIHFFC 641
EM I + ++ G Q + KL E+ +G D + +I+ +C
Sbjct: 376 EMHSRDIT-PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVT--FTELINGYC 432
Query: 642 KKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSM 701
K M+DA + M G PN T+ +++ G G EL EM ++
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK-EGDLDSANELLHEMWKIGLQPNI 491
Query: 702 NFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKT 753
+S++ + G A ++V E + D Y TL Y K+
Sbjct: 492 F----TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 539
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 9/147 (6%)
Query: 600 LVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659
L K C + A ++ + EV + V +N VIHF C+ +++A L M
Sbjct: 220 LSKDCYKTATAIIVFREFPEVG----VCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELK 275
Query: 660 GHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGG 719
G+ P+ ++ ++V GY G E+ ++W ++ + + + S++ R
Sbjct: 276 GYTPDVISYSTVVNGYCRFG----ELDKVW-KLIEVMKRKGLKPNSYIYGSIIGLLCRIC 330
Query: 720 FFARANEVVAMMEEGKMFIDKYKYRTL 746
A A E + M + D Y TL
Sbjct: 331 KLAEAEEAFSEMIRQGILPDTVVYTTL 357
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 38/171 (22%)
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
L++A D EM +G++A +V+ SL+ A+ +ANR + V +L++ +S G+ ++
Sbjct: 323 LEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNI 382
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEG 623
+L+ I + + A +F++M +K C + + M
Sbjct: 383 ILRHLIERGEKDEAFDVFRKM----------------IKVCEPDADTYTM---------- 416
Query: 624 QRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTG 674
VI FC+K+ M+ A+K K MR G P+ TF ++ G
Sbjct: 417 ------------VIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLING 455
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 125/299 (41%), Gaps = 23/299 (7%)
Query: 406 YEDFTKDRKFVALEAEVKRVLQTLLGMLQ-----KQVELITTEHGI-LQPTEKIYIKLVK 459
Y++ +D+ LE +V+ V ++G + K ++L+ L + ++
Sbjct: 257 YKEIERDK----LELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIIS 312
Query: 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV 519
A ++G+T E + + ++ A ++ + G L A ++ EM GV
Sbjct: 313 ALADSGRTLEAEALFEELRQSGIKPR--TRAYNALLKGYVKTGPLKDAESMVSEMEKRGV 370
Query: 520 RASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALH 579
Y+ L+ AY+ A R +L++ + +Q ++ + LL + +
Sbjct: 371 SPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQ 430
Query: 580 LFKEMKESKIPRSGHQEFEMLVKGCAQ----NHEAGLMAKLLQEVKEGQRIDCGVHDWNN 635
+ KEMK + + Q + +++ + +H ++L E E R+ WN
Sbjct: 431 VLKEMKSIGV-KPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVT-----WNT 484
Query: 636 VIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694
+I CK AE+ + M G LP A T++ M+ Y ++ ++ L G+MKS
Sbjct: 485 LIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGD-QERWDDMKRLLGKMKS 542
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/336 (19%), Positives = 131/336 (38%), Gaps = 46/336 (13%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQ 506
++P + Y L+K +++ G K+ + + EK VS D+ +I ++ G +
Sbjct: 335 IKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRG--VSPDEHTYSLLIDAYVNAGRWES 392
Query: 507 AHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQ 566
A +L EM V+ +S V++ LL + + ++ +L++ +S G++ D Y ++
Sbjct: 393 ARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVID 452
Query: 567 S------------------------------KIVQKDTPGALHLFKEMKESKIPRSG--- 593
+ ++ H+ E + R G
Sbjct: 453 TFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLP 512
Query: 594 -HQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKA 652
+ +++ M +LL ++K Q I V ++ + K DA +
Sbjct: 513 CATTYNIMINSYGDQERWDDMKRLLGKMK-SQGILPNVVTHTTLVDVYGKSGRFNDAIEC 571
Query: 653 LKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEEL--LDS 710
L+ M+S+G P++ +++++ YA G V +F TS L L+S
Sbjct: 572 LEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVN-------AFRVMTSDGLKPSLLALNS 624
Query: 711 VLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTL 746
++ F A A V+ M+E + D Y TL
Sbjct: 625 LINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTL 660
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 2/223 (0%)
Query: 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDE 513
Y ++++ + K + + E E ++ D + +I G +A LL
Sbjct: 235 YSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGM 294
Query: 514 MHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD 573
G+ A ++ S++ A ++ R E AL + R +GI+ Y ALL+ +
Sbjct: 295 AQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGP 354
Query: 574 TPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDW 633
A + EM++ + H + +L+ +L+E++ G + +
Sbjct: 355 LKDAESMVSEMEKRGVSPDEHT-YSLLIDAYVNAGRWESARIVLKEMEAGD-VQPNSFVF 412
Query: 634 NNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA 676
+ ++ F + Q + LK M+S+G P+ Q ++ ++ +
Sbjct: 413 SRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFG 455
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 108/247 (43%), Gaps = 11/247 (4%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G ++A ++ EM +G+ S+ Y SLL + E + D RS + D C+
Sbjct: 319 GKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCF 378
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESK-IPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE- 619
+++ + AL F +KE+ IP + + +L++G + + L E
Sbjct: 379 SSMMSLFTRSGNLDKALMYFNSVKEAGLIP--DNVIYTILIQGYCRKGMISVAMNLRNEM 436
Query: 620 VKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
+++G +D V +N ++H CK++++ +A+K M P++ T ++ G+ +
Sbjct: 437 LQQGCAMD--VVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKL- 493
Query: 680 GKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFID 739
G EL+ +MK + D +++L F + G A E+ A M ++
Sbjct: 494 GNLQNAMELFQKMK----EKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPT 549
Query: 740 KYKYRTL 746
Y L
Sbjct: 550 PISYSIL 556
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 36/184 (19%)
Query: 494 VITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAG 553
V LC S G L +A + DEM ++ + + S++K Y + + + L S G
Sbjct: 557 VNALC-SKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEG 615
Query: 554 IQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLM 613
D Y L+ + +++ A L K+M+E + GL+
Sbjct: 616 FVPDCISYNTLIYGFVREENMSKAFGLVKKMEE---------------------EQGGLV 654
Query: 614 AKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVT 673
V +N+++H FC++ M++AE L++M G P+ T+ M+
Sbjct: 655 PD--------------VFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMIN 700
Query: 674 GYAA 677
G+ +
Sbjct: 701 GFVS 704
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 89/191 (46%), Gaps = 4/191 (2%)
Query: 521 ASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHL 580
++ SV+ L++ Y++A + RE RS G + AL+ S + A +
Sbjct: 163 SNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGV 222
Query: 581 FKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFF 640
++E+ S + + + ++V ++ + + L +V+E + + + +N +I +
Sbjct: 223 YQEISRSGVGINVYT-LNIMVNALCKDGKMEKVGTFLSQVQE-KGVYPDIVTYNTLISAY 280
Query: 641 CKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM-KSFASST 699
K LM++A + + M G P T+++++ G GKY E++ EM +S S
Sbjct: 281 SSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCK-HGKYERAKEVFAEMLRSGLSPD 339
Query: 700 SMNFDEELLDS 710
S + L+++
Sbjct: 340 STTYRSLLMEA 350
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 129/336 (38%), Gaps = 42/336 (12%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQ 506
L P Y L+ + G E ++ + V D +++L G LD+
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVF--SDMRSRDVVPDLVCFSSMMSLFTRSGNLDK 393
Query: 507 AHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQ 566
A + + AG+ + +Y L++ Y L + G +D Y +L
Sbjct: 394 ALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILH 453
Query: 567 SKIVQKDTPGALHLFKEMKESKI-PRSGHQEFEMLVKG-CAQNHEAGLMAKLLQEVKEGQ 624
+K A LF EM E + P S +L+ G C + M +L Q++KE +
Sbjct: 454 GLCKRKMLGEADKLFNEMTERALFPDS--YTLTILIDGHCKLGNLQNAM-ELFQKMKE-K 509
Query: 625 RIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTE 684
RI V +N ++ F K + A++ M S LP ++ +V + G E
Sbjct: 510 RIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCS-KGHLAE 568
Query: 685 VTELWGEM--------------------KSFASSTSMNFDEELL-----------DSVLY 713
+W EM +S +S +F E+++ ++++Y
Sbjct: 569 AFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIY 628
Query: 714 TFVRGGFFARANEVVAMMEE--GKMFIDKYKYRTLF 747
FVR ++A +V MEE G + D + Y ++
Sbjct: 629 GFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSIL 664
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/346 (19%), Positives = 125/346 (36%), Gaps = 71/346 (20%)
Query: 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDL 510
+ ++ L++ +++A K +E + VS D A +I + +GW++ A +
Sbjct: 165 DSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSID--ACNALIGSLVRIGWVELAWGV 222
Query: 511 LDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIV 570
E+ +GV + ++ A + + +V L + G+ D Y L+ +
Sbjct: 223 YQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSS 282
Query: 571 QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGV 630
+ A L M G+ GV
Sbjct: 283 KGLMEEAFELMNAMP-------------------------------------GKGFSPGV 305
Query: 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWG 690
+ +N VI+ CK + A++ M G P++ T+ S++ A G E +++
Sbjct: 306 YTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLM-EACKKGDVVETEKVFS 364
Query: 691 EMKS---------FASSTSM-----NFDEELL------------DSVLYTFVRGGFFARA 724
+M+S F+S S+ N D+ L+ D+V+YT + G+ +
Sbjct: 365 DMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKG 424
Query: 725 NEVVAMMEEGKMF-----IDKYKYRTLFLKYHKTLYKGKTPKFQTE 765
VAM +M +D Y T+ K G+ K E
Sbjct: 425 MISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 34/224 (15%)
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
LD+A + + M Y +L+K + ++ R + T L R+ G+ D Y
Sbjct: 306 LDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 365
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIP--------------RSGHQEFEMLVKGCAQNHE 609
L+Q D A +FK+M +P +G E + V Q E
Sbjct: 366 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 425
Query: 610 AGLMAKLLQEVKEGQ----RIDCG---------------VHDWNNVIHFFCKKRLMQDAE 650
L + + EG ++D G V +N +I C KRL+Q+A
Sbjct: 426 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 485
Query: 651 KALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694
LK+M+ G LP++ T+++++ + G K EL EM+S
Sbjct: 486 ALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAAS-AELIREMRS 528
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 9/281 (3%)
Query: 480 ENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRP 539
+ L +SH+ +I + A LL +M G S +SLL Y R
Sbjct: 37 QRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI 96
Query: 540 REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEM 599
+ AL+ G + D + L+ + A+ L M + + + +
Sbjct: 97 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGC-QPNLVTYGV 155
Query: 600 LVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659
+V G + + L LL ++ E +I+ V +N +I CK R + DA K M +
Sbjct: 156 VVNGLCKRGDIDLAFNLLNKM-EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 214
Query: 660 GHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGG 719
G PN T+ S+++ + G++++ ++L +M +N + ++++ FV+ G
Sbjct: 215 GIRPNVVTYSSLISCLCSY-GRWSDASQLLSDM----IEKKINPNLVTFNALIDAFVKEG 269
Query: 720 FFARANEVVAMMEEGKMFIDKYKYRTLFLKY--HKTLYKGK 758
F A ++ M + + D + Y +L + H L K K
Sbjct: 270 KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAK 310
Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G +D DL + L GV+ + Y +++ +E ALL+ + G D+ Y
Sbjct: 444 GKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTY 503
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESK 588
L+++ + D + L +EM+ +
Sbjct: 504 NTLIRAHLRDGDKAASAELIREMRSCR 530
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 106/258 (41%), Gaps = 23/258 (8%)
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
++ A D E+ G+R + Y +L+ ++R + LL D I + Y A
Sbjct: 206 VNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSA 265
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQNH--EAGLMAKLLQEV 620
LL + + A LF+EM I + L+ G C + EA M L+ V
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSID-PDIVTYSSLINGLCLHDRIDEANQMFDLM--V 322
Query: 621 KEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGG 680
+G D V +N +I+ FCK + ++D K + M G + N T+++++ G+ G
Sbjct: 323 SKGCLAD--VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ-AG 379
Query: 681 KYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGF-----FARANEVVAMMEEGK 735
+ E + +M F S D Y + GG +A + M++ +
Sbjct: 380 DVDKAQEFFSQMDFFGISP---------DIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430
Query: 736 MFIDKYKYRTLFLKYHKT 753
M +D Y T+ KT
Sbjct: 431 MDLDIVTYTTVIRGMCKT 448
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 2/195 (1%)
Query: 480 ENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRP 539
E L + +D VI + A +L +M G SL+ + NR
Sbjct: 112 EVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRV 171
Query: 540 REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEM 599
+ +L+ G + D Y A++ S K A FKE+ E K R +
Sbjct: 172 SDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI-ERKGIRPNVVTYTA 230
Query: 600 LVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659
LV G + A+LL ++ + ++I V ++ ++ F K + +A++ + M +
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289
Query: 660 GHLPNAQTFHSMVTG 674
P+ T+ S++ G
Sbjct: 290 SIDPDIVTYSSLING 304
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 129/312 (41%), Gaps = 21/312 (6%)
Query: 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQA 507
+P+ Y LV A L + K EK L+ D +I G LDQA
Sbjct: 351 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLK--PDTILFNAIINASSESGNLDQA 408
Query: 508 HDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDA-RSAGIQLDASCYEALLQ 566
+ ++M +G + ++S + +L+K Y + + E + LL R +Q + L+Q
Sbjct: 409 MKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQ 468
Query: 567 SKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK-----GCAQNHEAGLMAKLL-QEV 620
+ Q+ A ++ +M+ + + F L K G E ++ ++L +V
Sbjct: 469 AWCNQRKIEEAWNIVYKMQSYGV-KPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKV 527
Query: 621 KEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGG 680
K R CG +++ +C++ M++A + RM+ LG PN F+S++ G+ I
Sbjct: 528 KPNVRT-CGT-----IVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIND 581
Query: 681 KYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDK 740
+ GE+ + D +++ + G R E+ M EG + D
Sbjct: 582 -----MDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDI 636
Query: 741 YKYRTLFLKYHK 752
+ + L Y +
Sbjct: 637 HAFSILAKGYAR 648
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 84/185 (45%), Gaps = 1/185 (0%)
Query: 499 ISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDA 558
I G +AH + + + G + S Y +L+ A + +L+ G++ D
Sbjct: 330 IERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDT 389
Query: 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618
+ A++ + + A+ +F++MKES + F L+KG + + ++LL
Sbjct: 390 ILFNAIINASSESGNLDQAMKIFEKMKESGC-KPTASTFNTLIKGYGKIGKLEESSRLLD 448
Query: 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAI 678
+ + + N ++ +C +R +++A + +M+S G P+ TF+++ YA I
Sbjct: 449 MMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARI 508
Query: 679 GGKYT 683
G T
Sbjct: 509 GSTCT 513
Score = 40.4 bits (93), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/235 (17%), Positives = 96/235 (40%), Gaps = 5/235 (2%)
Query: 446 ILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLD 505
+LQP ++ LV+A+ K +E + + K + + V D + +G
Sbjct: 455 MLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQ--SYGVKPDVVTFNTLAKAYARIGSTC 512
Query: 506 QAHDLL-DEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL 564
A D++ M V+ + +++ Y E + E + G+ + + +L
Sbjct: 513 TAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSL 572
Query: 565 LQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ 624
++ + D G + M+E + + F L+ + + ++ ++ EG
Sbjct: 573 IKGFLNINDMDGVGEVVDLMEEFGV-KPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGG 631
Query: 625 RIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
ID +H ++ + + + + AE+ L +MR G PN + +++G+ + G
Sbjct: 632 -IDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAG 685
Score = 40.0 bits (92), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 48/272 (17%), Positives = 96/272 (35%), Gaps = 40/272 (14%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQ 506
+ P ++ L+K FL + + E+ V D ++ S+G + +
Sbjct: 562 VHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEE--FGVKPDVVTFSTLMNAWSSVGDMKR 619
Query: 507 AHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQ 566
++ +M G+ ++ L K Y A P + +L R G++ + Y ++
Sbjct: 620 CEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIIS 679
Query: 567 SKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI 626
+ A+ ++K+M C GL L
Sbjct: 680 GWCSAGEMKKAMQVYKKM-------------------CGI---VGLSPNLTT-------- 709
Query: 627 DCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVT 686
+ +I F + + AE+ LK M +P +T + G+ +IG +
Sbjct: 710 ------YETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIADGWKSIGVSNSNDA 763
Query: 687 ELWGEMKSFASSTSMNFDEELLDSVLYTFVRG 718
G SF++S+ +N + S F++G
Sbjct: 764 NTLGS--SFSTSSKLNIPNNIASSRSPLFLKG 793
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 103/252 (40%), Gaps = 11/252 (4%)
Query: 444 HGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW 503
H + P Y ++ F + + + H +L S D +I +
Sbjct: 394 HRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF------DLMASPDVVTFNTIIDVYCRAKR 447
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
+D+ LL E+ G+ A+++ Y +L+ + E + L ++ S G+ D
Sbjct: 448 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 507
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK-E 622
LL + AL LF+ ++ SKI + +++ G + + L +
Sbjct: 508 LLYGFCENEKLEEALELFEVIQMSKIDLDT-VAYNIIIHGMCKGSKVDEAWDLFCSLPIH 566
Query: 623 GQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKY 682
G D V +N +I FC K + DA +M+ GH P+ T+++++ G G+
Sbjct: 567 GVEPD--VQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLK-AGEI 623
Query: 683 TEVTELWGEMKS 694
+ EL EM+S
Sbjct: 624 DKSIELISEMRS 635
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/254 (19%), Positives = 92/254 (36%), Gaps = 43/254 (16%)
Query: 499 ISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDA 558
+ G+L +A L D+M G+ + +L+ R E AL+ G+ +D
Sbjct: 203 VETGFL-EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDV 261
Query: 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618
Y ++ DT AL+L +M+E+ I
Sbjct: 262 VTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPD-------------------------- 295
Query: 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAI 678
V ++ +I CK DA+ M G PN T++ M+ G+ +
Sbjct: 296 -----------VVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSF 344
Query: 679 GGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFI 738
G++++ L +M +N D ++++ V+ G A ++ M +F
Sbjct: 345 -GRWSDAQRLLRDM----IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFP 399
Query: 739 DKYKYRTLFLKYHK 752
D Y ++ + K
Sbjct: 400 DTVTYNSMIYGFCK 413
Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 3/180 (1%)
Query: 497 LCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQL 556
LC+ G + +A L+++M G+ Y +++ + + LL I+
Sbjct: 236 LCLE-GRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKP 294
Query: 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKL 616
D Y A++ A +LF EM E I + + ++ G +L
Sbjct: 295 DVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFT-YNCMIDGFCSFGRWSDAQRL 353
Query: 617 LQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA 676
L+++ E + I+ V +N +I K+ + +AEK M P+ T++SM+ G+
Sbjct: 354 LRDMIE-REINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 412
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 9/231 (3%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT-LCISLGWLD 505
+ P + ++ F++ GK E + E V D +I LC+ G +D
Sbjct: 240 IVPNVITFTAVIDVFVKEGKFSEAMK--LYEEMTRRCVDPDVFTYNSLINGLCMH-GRVD 296
Query: 506 QAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALL 565
+A +LD M G Y +L+ + ++ R E T L R+ G+ D Y ++
Sbjct: 297 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 356
Query: 566 QSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQR 625
Q A +F M R + + +L+ G N L + +++ +
Sbjct: 357 QGYFQAGRPDAAQEIFSRMDS----RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSE- 411
Query: 626 IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA 676
I+ + +N VIH CK ++DA + + G P+ ++ +M++G+
Sbjct: 412 IELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFC 462
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 104/250 (41%), Gaps = 11/250 (4%)
Query: 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQA 507
+P L+ F + + + + K E+ + D +I +G ++ A
Sbjct: 136 EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFR--PDVVIYNTIIDGSCKIGLVNDA 193
Query: 508 HDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567
+L D M GVRA + Y SL+ + R + L+RD I + + A++
Sbjct: 194 VELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDV 253
Query: 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN---HEAGLMAKLLQEVKEGQ 624
+ + A+ L++EM + + L+ G + EA M L+ V +G
Sbjct: 254 FVKEGKFSEAMKLYEEMTRRCVDPDVFT-YNSLINGLCMHGRVDEAKQMLDLM--VTKGC 310
Query: 625 RIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTE 684
D V +N +I+ FCK + + + K + M G + + T+++++ GY G+
Sbjct: 311 LPD--VVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQ-AGRPDA 367
Query: 685 VTELWGEMKS 694
E++ M S
Sbjct: 368 AQEIFSRMDS 377
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 133/306 (43%), Gaps = 20/306 (6%)
Query: 444 HGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW 503
+G LQ ++ +++ F E G+ E ++ + + L S + V+ + + LG
Sbjct: 140 NGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPS--SITMNCVLEIAVELGL 197
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAG-IQLDASC-- 560
++ A ++ DEM + GV SS Y ++ + +E L G I +A+C
Sbjct: 198 IEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTL 257
Query: 561 -YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE 619
AL ++ +V + A+ F++M + + F L+ G + ++L+E
Sbjct: 258 ILTALCENGLVNR----AIWYFRKMIDLGF-KPNLINFTSLIDGLCKKGSIKQAFEMLEE 312
Query: 620 -VKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKA-LKRMRSLGHLPNAQTFHSMVTGYAA 677
V+ G + + V+ +I CK+ + A + LK +RS + PN T+ SM+ GY
Sbjct: 313 MVRNGWKPN--VYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCK 370
Query: 678 IGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMF 737
K L+ MK ++N L++ + G F RA E++ +M +
Sbjct: 371 -EDKLNRAEMLFSRMKEQGLFPNVNTYTTLING----HCKAGSFGRAYELMNLMGDEGFM 425
Query: 738 IDKYKY 743
+ Y Y
Sbjct: 426 PNIYTY 431
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 37/178 (20%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G +A++L++ M G + Y + + + + +R E LL A S G++ D Y
Sbjct: 407 GSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTY 466
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621
L+Q + Q D AL F M ++ G A +
Sbjct: 467 TILIQEQCKQNDINQALAFFCRMNKT-----------------------GFEADM----- 498
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
R++ N +I FC+++ M+++E+ + + SLG +P +T+ SM++ Y G
Sbjct: 499 ---RLN------NILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEG 547
>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580,
mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2
SV=1
Length = 405
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 113/263 (42%), Gaps = 15/263 (5%)
Query: 448 QPTEKIYIKLVKAFLEAGKTKELTHFL--IKAEKENLQVSHDDAALGHVITLCISL-GWL 504
QPTE +Y ++ F +A E+ + IK EK + + +++ + +L G +
Sbjct: 92 QPTESLYALMINKFGQAKMYDEIEEVMRTIKLEK---RCRFSEEFFYNLMRIYGNLAGRI 148
Query: 505 DQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL 564
++A ++L M G SS + +L + A E+ + A G+++DA C L
Sbjct: 149 NRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNIL 208
Query: 565 LQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ 624
++ + AL L E + K R F L++G + KLL+ + E +
Sbjct: 209 IKGLCESGNLEAALQLLDEFPQQK-SRPNVMTFSPLIRGFCNKGKFEEAFKLLERM-EKE 266
Query: 625 RIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTE 684
RI+ +N +I KK +++ L+RM+ G PN T+ ++ G + E
Sbjct: 267 RIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLD-KKRNLE 325
Query: 685 VTEL------WGEMKSFASSTSM 701
E+ WG SF S M
Sbjct: 326 AKEMMSQMISWGMRPSFLSYKKM 348
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 132/280 (47%), Gaps = 16/280 (5%)
Query: 443 EHGILQPTEKIYIKLVKAF---LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCI 499
++GI+ P Y L+ ++ + GK KE+ + K ++ V+++ +I
Sbjct: 383 QNGII-PDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYN-----ALIDAYG 436
Query: 500 SLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDAS 559
S G+L +A ++ +M G++ + +LL A + + V +L A+S GI L+ +
Sbjct: 437 SNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTA 496
Query: 560 CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE 619
Y + + S I + A+ L++ M++ K+ ++ F +L+ G + + L+E
Sbjct: 497 AYNSAIGSYINAAELEKAIALYQSMRKKKV-KADSVTFTILISGSCRMSKYPEAISYLKE 555
Query: 620 VKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
+ E I +++V+ + K+ + +AE +M+ G P+ + SM+ Y A
Sbjct: 556 M-EDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNA-S 613
Query: 680 GKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGG 719
K+ + EL+ EM+ + + D +++ F +GG
Sbjct: 614 EKWGKACELFLEME----ANGIEPDSIACSALMRAFNKGG 649
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 108/246 (43%), Gaps = 9/246 (3%)
Query: 507 AHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQ 566
A +L+D+M A + S S Y +L+ A + RE + + G+ D + +L
Sbjct: 197 AMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLS 256
Query: 567 SKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI 626
+ + AL F+ MK +K+ R F +++ ++ ++ L ++E +R
Sbjct: 257 AYKSGRQYSKALSYFELMKGAKV-RPDTTTFNIIIYCLSKLGQSSQALDLFNSMRE-KRA 314
Query: 627 DC--GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTE 684
+C V + +++H + K +++ + M + G PN ++++++ YA G T
Sbjct: 315 ECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTA 374
Query: 685 VTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYR 744
++ L G++K + D +L ++ R +A EV MM + + + Y
Sbjct: 375 LSVL-GDIK----QNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYN 429
Query: 745 TLFLKY 750
L Y
Sbjct: 430 ALIDAY 435
>sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protein At5g27270
OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2
Length = 1038
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 4/204 (1%)
Query: 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL 516
LV A GK +E H ++N+++ D +I + G L A ++ + MH
Sbjct: 745 LVNALTNRGKHREAEHISRTCLEKNIEL--DTVGYNTLIKAMLEAGKLQCASEIYERMHT 802
Query: 517 AGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPG 576
+GV S Y +++ Y + + + +AR +G+ LD Y ++
Sbjct: 803 SGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSE 862
Query: 577 ALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNV 636
AL LF EM++ I + G + M+VK CA + + +LLQ ++ R + + +
Sbjct: 863 ALSLFSEMQKKGI-KPGTPSYNMMVKICATSRLHHEVDELLQAMERNGRC-TDLSTYLTL 920
Query: 637 IHFFCKKRLMQDAEKALKRMRSLG 660
I + + +AEK + ++ G
Sbjct: 921 IQVYAESSQFAEAEKTITLVKEKG 944
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 7/241 (2%)
Query: 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQA 507
+P ++ A+ AG +A E ++ D +I + G D
Sbjct: 242 EPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRI--DAVTFSTLIRIYGVSGNYDGC 299
Query: 508 HDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567
++ +EM GV+ + +Y L+ + A RP + + +D + G + S Y AL+++
Sbjct: 300 LNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRA 359
Query: 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRID 627
+ AL +++EMKE + + + L+ CA N ++ Q++K + D
Sbjct: 360 YGRARYGDDALAIYREMKEKGLSLTVIL-YNTLLSMCADNRYVDEAFEIFQDMKNCETCD 418
Query: 628 CGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTE 687
++++I + + +AE AL +MR G P S++ Y GK +V +
Sbjct: 419 PDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCY----GKAKQVDD 474
Query: 688 L 688
+
Sbjct: 475 V 475
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%)
Query: 484 VSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVT 543
+ D+A +I+ G +A + ++M G + A+++ AY A
Sbjct: 206 IKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMAL 265
Query: 544 ALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMK 585
+L AR+ ++DA + L++ V + G L++++EMK
Sbjct: 266 SLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMK 307
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 8/247 (3%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQ 506
QP + Y ++ G+ E+ E + + + D + +I C + G L+
Sbjct: 291 FQPDMQTYNPILSWMCNEGRASEVLR-----EMKEIGLVPDSVSYNILIRGCSNNGDLEM 345
Query: 507 AHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQ 566
A DEM G+ + Y +L+ N+ L+R+ R GI LD+ Y L+
Sbjct: 346 AFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILIN 405
Query: 567 SKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI 626
D A L EM I + ++ C +N + V +G +
Sbjct: 406 GYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKP 465
Query: 627 DCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVT 686
D + N ++ C M A LK M + P+ T++ ++ G GK+ E
Sbjct: 466 DLVM--MNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCG-EGKFEEAR 522
Query: 687 ELWGEMK 693
EL GEMK
Sbjct: 523 ELMGEMK 529
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 93/205 (45%), Gaps = 9/205 (4%)
Query: 477 AEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA 536
A+ +++ + +I + G L +A L M + G++ + Y +L++ +
Sbjct: 214 ADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLR 273
Query: 537 NRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKE-SKIPRSGHQ 595
R ++ + +S G Q D Y +L + A + +EMKE +P S
Sbjct: 274 GRIEGARLIISEMKSKGFQPDMQTYNPILSWMC---NEGRASEVLREMKEIGLVPDS--V 328
Query: 596 EFEMLVKGCAQNHEAGLMAKLLQE-VKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALK 654
+ +L++GC+ N + + E VK+G + + +N +IH + ++ AE ++
Sbjct: 329 SYNILIRGCSNNGDLEMAFAYRDEMVKQG--MVPTFYTYNTLIHGLFMENKIEAAEILIR 386
Query: 655 RMRSLGHLPNAQTFHSMVTGYAAIG 679
+R G + ++ T++ ++ GY G
Sbjct: 387 EIREKGIVLDSVTYNILINGYCQHG 411
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 45/241 (18%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQ---VSHDDAALGHVITLCISLGW 503
+QPT+ Y L+ KT+E K + ++ V + GH ++G
Sbjct: 428 IQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHC-----AIGN 482
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
+D+A LL EM + + Y L++ + E L+ + + GI+ D Y
Sbjct: 483 MDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNT 542
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEG 623
L+ + DT A + EM + L+KG ++N E L
Sbjct: 543 LISGYSKKGDTKHAFMVRDEMLSLGF-NPTLLTYNALLKGLSKNQEGEL----------- 590
Query: 624 QRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYT 683
AE+ L+ M+S G +PN +F S++ + + K +
Sbjct: 591 -------------------------AEELLREMKSEGIVPNDSSFCSVIEAMSNLDAKKS 625
Query: 684 E 684
+
Sbjct: 626 D 626
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 118/302 (39%), Gaps = 40/302 (13%)
Query: 480 ENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRP 539
E L +SHD + +I L A L +M G S + SL+ + NR
Sbjct: 106 EMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRF 165
Query: 540 REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEM 599
E +L+ G + + Y ++ S + AL + K MK+ I R +
Sbjct: 166 YEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGI-RPDVVTYNS 224
Query: 600 LVKGCAQNHEAGLMAKLLQEV--------------------KEGQ--------------R 625
L+ + G+ A++L ++ KEGQ
Sbjct: 225 LITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRS 284
Query: 626 IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEV 685
++ + +N++I+ C L+ +A+K L + S G PNA T+++++ GY K V
Sbjct: 285 VNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYC----KAKRV 340
Query: 686 TELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRT 745
+ ++ S ++ D +++ + + G F+ A +V+ M + D Y +
Sbjct: 341 DD-GMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNI 399
Query: 746 LF 747
L
Sbjct: 400 LL 401
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 3/178 (1%)
Query: 497 LCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQL 556
LCI G LD+A +L+ + G ++ Y +L+ Y +A R + +L G+
Sbjct: 299 LCIH-GLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDG 357
Query: 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKL 616
D Y L Q A + M + + F +L+ G + + G
Sbjct: 358 DTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYT-FNILLDGLCDHGKIGKALVR 416
Query: 617 LQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTG 674
L+++++ + + G+ +N +I CK ++DA + G P+ T+ +M+ G
Sbjct: 417 LEDLQKSKTV-VGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIG 473
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 78/210 (37%), Gaps = 41/210 (19%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G ++ A D+L M G+R Y SL+ + +L D GI D +
Sbjct: 198 GQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITF 257
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQE---FEMLVKG-CAQN--HEAGLMAK 615
AL+ + K+ G L K+ I RS + + L+ G C EA +
Sbjct: 258 SALID--VYGKE--GQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLN 313
Query: 616 LL----------------------QEVKEGQRIDC-----GVHD----WNNVIHFFCKKR 644
+L + V +G +I C GV +N + +C+
Sbjct: 314 VLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAG 373
Query: 645 LMQDAEKALKRMRSLGHLPNAQTFHSMVTG 674
AEK L RM S G P+ TF+ ++ G
Sbjct: 374 KFSAAEKVLGRMVSCGVHPDMYTFNILLDG 403
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 12/177 (6%)
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
++QA DL EM +GV + +++L+ Y + L + GI D Y A
Sbjct: 425 MEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTA 484
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEG 623
L+ + + + AL L+ +M E+ I + H F LV G + + QE
Sbjct: 485 LIDAHFKEANMKEALRLYSDMLEAGIHPNDHT-FACLVDGFWKEGRLSVAIDFYQE--NN 541
Query: 624 QRIDCGVHDWNNV-----IHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGY 675
Q+ C WN+V I C+ + A + MRS G P+ ++ SM+ G+
Sbjct: 542 QQRSC----WNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGH 594
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 8/191 (4%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G + QA+ L E+ +A + + V+ +L+ + +A +L G+ + Y
Sbjct: 283 GNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVY 342
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621
L+ + A+ L EM+ + + +L+ G + +L Q++K
Sbjct: 343 NCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFT-YTILINGLCIEDQVAEANRLFQKMK 401
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA----- 676
+RI +N++IH +CK+ M+ A M + G PN TF +++ GY
Sbjct: 402 -NERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDI 460
Query: 677 -AIGGKYTEVT 686
A G Y E+T
Sbjct: 461 KAAMGLYFEMT 471
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 8/209 (3%)
Query: 498 CISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLD 557
C G + LLDEM G++ + +Y + N+ E + + G+ +
Sbjct: 209 CFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPN 268
Query: 558 ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQNHEAGLMAKL 616
Y A++ + A L+KE+ +++ F LV G C +
Sbjct: 269 LYTYSAMIDGYCKTGNVRQAYGLYKEILVAEL-LPNVVVFGTLVDGFCKARELVTARSLF 327
Query: 617 LQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA 676
+ VK G +D ++ +N +IH CK M +A L M SL P+ T+ ++ G
Sbjct: 328 VHMVKFG--VDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILING-L 384
Query: 677 AIGGKYTEVTELWGEMKS---FASSTSMN 702
I + E L+ +MK+ F SS + N
Sbjct: 385 CIEDQVAEANRLFQKMKNERIFPSSATYN 413
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTG 674
KLL E+ I V+ + I C+ M++AEK + M+ G LPN T+ +M+ G
Sbjct: 220 KLLDEMT-SLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDG 278
Query: 675 YAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLY--TFVRGGFFARANEVVA 729
Y G V + +G K + ELL +V+ T V G F +A E+V
Sbjct: 279 YCKTGN----VRQAYGLYKEILVA-------ELLPNVVVFGTLVDG--FCKARELVT 322
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 11/247 (4%)
Query: 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALL 546
D H++ L L++ DLL EM G + Y LL+AY ++ +E +
Sbjct: 281 DLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVF 340
Query: 547 RDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606
++AG +A+ Y LL LF EMK S + +L++ +
Sbjct: 341 HQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA-ATYNILIEVFGE 399
Query: 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666
+ L ++ E + I+ + + +I K L +DA K L+ M + +P+++
Sbjct: 400 GGYFKEVVTLFHDMVE-ENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSK 458
Query: 667 TFHSMVT--GYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARA 724
+ ++ G AA+ Y E + M S+ S+ E S+LY+F RGG +
Sbjct: 459 AYTGVIEAFGQAAL---YEEALVAFNTMHEVGSNPSI----ETFHSLLYSFARGGLVKES 511
Query: 725 NEVVAMM 731
+++ +
Sbjct: 512 EAILSRL 518
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 114/281 (40%), Gaps = 50/281 (17%)
Query: 493 HVITLCISL----GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR---------- 538
H+ T+ ISL G LD+ ++ DEM GV S Y +L+ AY R
Sbjct: 142 HIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDR 201
Query: 539 -------PREVT-------------------ALLRDARSAGIQLDASCYEALLQSKIVQK 572
P +T L + R GIQ D Y LL + ++
Sbjct: 202 MKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG 261
Query: 573 DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHD 632
A +F+ M + I + LV+ + + LL E+ G + +
Sbjct: 262 LGDEAEMVFRTMNDGGIVPD-LTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLP-DITS 319
Query: 633 WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692
+N ++ + K +++A +M++ G PNA T+ ++ + G+Y +V +L+ EM
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQ-SGRYDDVRQLFLEM 378
Query: 693 KSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733
K S++ + D + ++ F GG+F EVV + +
Sbjct: 379 K----SSNTDPDAATYNILIEVFGEGGYF---KEVVTLFHD 412
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/447 (19%), Positives = 155/447 (34%), Gaps = 63/447 (14%)
Query: 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREEL 307
++P+ T+N L+ C + +AE + M G+ D L +H+ E G+ L
Sbjct: 242 GIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPD---LTTYSHLVETFGKLRRL 298
Query: 308 RKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAM 367
K+ + E + + YN LL + K G + A V +Q A N+ ++
Sbjct: 299 EKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG-VFHQMQAAGCTPNANTYSV 357
Query: 368 LPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQ 427
L N G + R Y+D V Q
Sbjct: 358 L-LNLFGQSGR---------------------------YDD----------------VRQ 373
Query: 428 TLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD 487
L M + P Y L++ F E G KE+ +EN++ D
Sbjct: 374 LFLEMKSSNTD----------PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIE--PD 421
Query: 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLR 547
+I C G + A +L M + SS Y +++A+ +A E
Sbjct: 422 METYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFN 481
Query: 548 DARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607
G + +LL S + + + +S IPR+ F ++ Q
Sbjct: 482 TMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRN-RDTFNAQIEAYKQG 540
Query: 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQT 667
+ K ++ E R D V+ + RL+ + + + M++ LP+
Sbjct: 541 GKFEEAVKTYVDM-EKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMC 599
Query: 668 FHSMVTGYAAIGGKYTEVTELWGEMKS 694
+ M+ Y ++ +V EL EM S
Sbjct: 600 YCMMLAVYGKT-ERWDDVNELLEEMLS 625
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 126/301 (41%), Gaps = 14/301 (4%)
Query: 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL 516
L+K+F + G +EL K ++ ++ + ++ +S ++D A + + M
Sbjct: 193 LIKSFGKLGMVEELLWVWRKMKENGIEPTL--YTYNFLMNGLVSAMFVDSAERVFEVMES 250
Query: 517 AGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPG 576
++ Y +++K Y +A + ++ LRD + G + D Y ++Q+ D
Sbjct: 251 GRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGS 310
Query: 577 ALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE-VKEGQRIDCGVHDWNN 635
+ L++EM E I H F +++ G + + + + +++G + + + +
Sbjct: 311 CVALYQEMDEKGIQVPPHA-FSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAI--YTV 367
Query: 636 VIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSF 695
+I + K ++DA + L RM G P+ T+ +V G G+ E + + +
Sbjct: 368 LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCK-NGRVEEALDYFHTCRFD 426
Query: 696 ASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTL---FLKYHK 752
+ + F L+D + + G A + M E D Y Y L F K+ K
Sbjct: 427 GLAINSMFYSSLIDGL----GKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRK 482
Query: 753 T 753
Sbjct: 483 V 483
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 2/161 (1%)
Query: 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQA 507
+P IY L+ + ++G ++ L + E + D V+ G +++A
Sbjct: 359 KPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNGRVEEA 416
Query: 508 HDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567
D G+ +S Y+SL+ +A R E L + G D+ CY AL+ +
Sbjct: 417 LDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDA 476
Query: 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608
+ A+ LFK M+E + + +L+ G + H
Sbjct: 477 FTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEH 517
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 12/236 (5%)
Query: 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQA 507
+P Y LV F + GK E + L + + L+ + +I+ + +A
Sbjct: 421 KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLK--PNTVGFNCLISAFCKEHRIPEA 478
Query: 508 HDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567
++ EM G + + SL+ E + + LLRD S G+ + Y L+ +
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538
Query: 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEA----GLMAKLLQEVKEG 623
+ + + A L EM P + L+KG + E L K+L++
Sbjct: 539 FLRRGEIKEARKLVNEMVFQGSPLD-EITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAP 597
Query: 624 QRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
I C N +I+ C+ ++++A + K M G P+ TF+S++ G G
Sbjct: 598 SNISC-----NILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAG 648
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 86/193 (44%), Gaps = 5/193 (2%)
Query: 501 LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASC 560
LG +D+A+++L+EM G++ ++ + L+ A+ + +R E + R+ G + D
Sbjct: 437 LGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYT 496
Query: 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE- 619
+ +L+ + AL L ++M + + + L+ + E KL+ E
Sbjct: 497 FNSLISGLCEVDEIKHALWLLRDMISEGVV-ANTVTYNTLINAFLRRGEIKEARKLVNEM 555
Query: 620 VKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
V +G +D +N++I C+ + A ++M GH P+ + + ++ G
Sbjct: 556 VFQGSPLD--EITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCR-S 612
Query: 680 GKYTEVTELWGEM 692
G E E EM
Sbjct: 613 GMVEEAVEFQKEM 625
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 510 LLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSA-GIQLDASCYEALLQSK 568
LL +M G+ S++ S+++ Y +A P + T L+ + R+ + Y +L+
Sbjct: 133 LLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEIL 192
Query: 569 IVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQNHEAGLMAKLLQEVKEGQRID 627
+ A ++F +M KIP + F +++K CA N ++ L K G +
Sbjct: 193 VSGNCHKVAANVFYDMLSRKIPPTLFT-FGVVMKAFCAVNEIDSALSLLRDMTKHGCVPN 251
Query: 628 CGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTG 674
+ + +IH K + +A + L+ M +G +P+A+TF+ ++ G
Sbjct: 252 SVI--YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG 296
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQ 506
L+P + L+ AF + + E + ++ + D +I+ + +
Sbjct: 455 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCK--PDVYTFNSLISGLCEVDEIKH 512
Query: 507 AHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQ 566
A LL +M GV A++ Y +L+ A++ +E L+ + G LD Y +L++
Sbjct: 513 ALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIK 572
Query: 567 SKIVQKDTPGALHLFKEMKESKIPRSGHQ----EFEMLVKGCAQNHEAGLMAKLLQEVKE 622
+ A LF++M R GH +L+ G + +G++ + ++ KE
Sbjct: 573 GLCRAGEVDKARSLFEKML-----RDGHAPSNISCNILINGLCR---SGMVEEAVEFQKE 624
Query: 623 ----GQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVT 673
G D + +N++I+ C+ ++D +++++ G P+ TF+++++
Sbjct: 625 MVLRGSTPD--IVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMS 677
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 6/191 (3%)
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
+++A LL+EM L G + + ++ + +R E ++ G D Y
Sbjct: 268 VNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGY 327
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEG 623
L+ A LF +IP+ F L+ G + +L ++
Sbjct: 328 LMNGLCKIGRVDAAKDLFY-----RIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTS 382
Query: 624 QRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYT 683
I V +N++I+ + K+ L+ A + L MR+ G PN ++ +V G+ + GK
Sbjct: 383 YGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKL-GKID 441
Query: 684 EVTELWGEMKS 694
E + EM +
Sbjct: 442 EAYNVLNEMSA 452
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 23/189 (12%)
Query: 174 GLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQD 233
G K G A +L ++ A P ++ +++ A+ I E +F++
Sbjct: 433 GFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLIS--------AFCKEHRIPEAVEIFRE 484
Query: 234 GRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLII 293
PRK C KP+ TFN ++G + + A LL M GV A++
Sbjct: 485 M---PRKGC-------KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 534
Query: 294 MAHIYERNGRREELRKL-QRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEM 352
+ + + R G +E RKL + + L +I YN L+ + G+++ A + +M
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEIT----YNSLIKGLCRAGEVDKARSLFEKM 590
Query: 353 LQRAKEARN 361
L+ N
Sbjct: 591 LRDGHAPSN 599
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 105/232 (45%), Gaps = 10/232 (4%)
Query: 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHV-ITLCISLGWLDQ 506
+P+ Y ++K F+E K KE E D + H+ I + G ++
Sbjct: 206 EPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEK 265
Query: 507 AHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQ 566
A + M GV S+ Y SL+ E + +EV+ + + + IQ D Y L++
Sbjct: 266 ARKVFSSMVGKGVPQSTVTYNSLMS--FETSY-KEVSKIYDQMQRSDIQPDVVSYALLIK 322
Query: 567 SKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLM--AKLLQEVKEGQ 624
+ + AL +F+EM ++ + R H+ + +L+ A +G++ AK + +
Sbjct: 323 AYGRARREEEALSVFEEMLDAGV-RPTHKAYNILLDAFAI---SGMVEQAKTVFKSMRRD 378
Query: 625 RIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA 676
RI + + ++ + M+ AEK KR++ G PN T+ +++ GYA
Sbjct: 379 RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYA 430
Score = 40.0 bits (92), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 58/345 (16%), Positives = 135/345 (39%), Gaps = 68/345 (19%)
Query: 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIM---PRIGVKADSNLLIIMAHIYERNGRREE 306
+P+ T+ I L + + ++AE++ + + + +K D + +M ++Y++ G E+
Sbjct: 206 EPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEK 265
Query: 307 LRKL-QRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAA 365
RK+ + + V S + YN L+S + +++ + + +QR+
Sbjct: 266 ARKVFSSMVGKGVPQSTVT----YNSLMSFETSYKEVSK----IYDQMQRSD-------- 309
Query: 366 AMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRV 425
I+ ++SY K E E V
Sbjct: 310 ---------------------------------IQPDVVSYALLIKAYGRARREEEALSV 336
Query: 426 LQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVS 485
+ +L + G+ +PT K Y L+ AF +G ++ ++ ++
Sbjct: 337 FEEML------------DAGV-RPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD--RIF 381
Query: 486 HDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTAL 545
D + +++ ++ ++ A + + G + Y +L+K Y +AN ++ +
Sbjct: 382 PDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEV 441
Query: 546 LRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIP 590
R +GI+ + + ++ + K+ AL +KEM+ +P
Sbjct: 442 YEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVP 486
Score = 39.7 bits (91), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 95/413 (23%), Positives = 153/413 (37%), Gaps = 76/413 (18%)
Query: 319 NLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARN--SLAAAMLPFNAVGVN 376
N S+I F L++ + K G+ N A + VL +L + N S A M + G
Sbjct: 136 NFSEIDFL----MLITAYGKLGNFNGAER-VLSVLSKMGSTPNVISYTALMESYGRGGKC 190
Query: 377 NRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQ 436
N +E S E S I IL + F + KF E + V +TLL
Sbjct: 191 NN--AEAIFRRMQSSGPEPSAITYQIIL--KTFVEGDKF----KEAEEVFETLL------ 236
Query: 437 VELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHF------------------LIKAE 478
+ L+P +K+Y ++ + +AG ++ L+ E
Sbjct: 237 ----DEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFE 292
Query: 479 KENLQVS--HDDAALGHVITLCISLGWL----------DQAHDLLDEMHLAGVRASSSVY 526
+VS +D + +S L ++A + +EM AGVR + Y
Sbjct: 293 TSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAY 352
Query: 527 ASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMK- 585
LL A+ + + + + R I D Y +L + + D GA FK +K
Sbjct: 353 NILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKV 412
Query: 586 ---ESKIPRSGHQEFEMLVKGCAQNHEAGLMAKL-----LQEVKEGQRIDCGVHDWNNVI 637
E I G L+KG A+ ++ M ++ L +K Q I + D +
Sbjct: 413 DGFEPNIVTYG-----TLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGR- 466
Query: 638 HFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWG 690
CK A K M S G +P Q +++ A+ + E EL G
Sbjct: 467 ---CKN--FGSALGWYKEMESCG-VPPDQKAKNVLLSLASTQDELEEAKELTG 513
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 20/261 (7%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT-LCISLGWLD 505
P+ Y L+ GK ++ L +++ L S D + V++ C S +D
Sbjct: 411 FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGL--SPDVVSYSTVLSGFCRSYD-VD 467
Query: 506 QAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALL 565
+A + EM G++ + Y+SL++ + E R +E L + G+ D Y AL+
Sbjct: 468 EALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALI 527
Query: 566 QSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC---AQNHEAG-LMAKLLQEVK 621
+ ++ D AL L EM E + + +L+ G ++ EA L+ KL E
Sbjct: 528 NAYCMEGDLEKALQLHNEMVEKGV-LPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEES 586
Query: 622 EGQRI-------DCGVHDWNNVIHF---FCKKRLMQDAEKALKRMRSLGHLPNAQTFHSM 671
+ +C ++ +V+ FC K +M +A++ + M H P+ ++ M
Sbjct: 587 VPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIM 646
Query: 672 VTGYAAIGGKYTEVTELWGEM 692
+ G+ G + L+ EM
Sbjct: 647 IHGHCR-AGDIRKAYTLYKEM 666
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 90/192 (46%), Gaps = 5/192 (2%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G +++A + LD+M + G+ + Y +L+ + + E +LR+ G Y
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE-V 620
AL+ V A+ + ++MKE + + ++ G ++++ ++ +E V
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGLS-PDVVSYSTVLSGFCRSYDVDEALRVKREMV 477
Query: 621 KEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGG 680
++G + D ++++I FC++R ++A + M +G P+ T+ +++ Y + G
Sbjct: 478 EKGIKPD--TITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY-CMEG 534
Query: 681 KYTEVTELWGEM 692
+ +L EM
Sbjct: 535 DLEKALQLHNEM 546
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 100/207 (48%), Gaps = 12/207 (5%)
Query: 521 ASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQK-DTPGALH 579
++SSV+ ++K+Y + + +++ A++ G Y A+L + I K + A +
Sbjct: 132 STSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAEN 191
Query: 580 LFKEMKESKIPRSGHQEFEMLVKG-C-AQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVI 637
+FKEM ES++ + + +L++G C A N + L L + E + V +N +I
Sbjct: 192 VFKEMLESQVSPNVFT-YNILIRGFCFAGNIDVALT---LFDKMETKGCLPNVVTYNTLI 247
Query: 638 HFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFAS 697
+CK R + D K L+ M G PN +++ ++ G G+ EV+ + EM
Sbjct: 248 DGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCR-EGRMKEVSFVLTEMNRRGY 306
Query: 698 STSMNFDEELLDSVLYTFVRGGFFARA 724
S DE ++++ + + G F +A
Sbjct: 307 S----LDEVTYNTLIKGYCKEGNFHQA 329
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 18/186 (9%)
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G +D A L D+M G + Y +L+ Y + + + LLR G++ + Y
Sbjct: 219 GNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISY 278
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQ----EFEMLVKG-CAQN--HEAGLM- 613
++ + + EM R G+ + L+KG C + H+A +M
Sbjct: 279 NVVINGLCREGRMKEVSFVLTEMN-----RRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333
Query: 614 AKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVT 673
A++L+ + V + ++IH CK M A + L +MR G PN +T+ ++V
Sbjct: 334 AEMLR-----HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVD 388
Query: 674 GYAAIG 679
G++ G
Sbjct: 389 GFSQKG 394
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,581,763
Number of Sequences: 539616
Number of extensions: 11375162
Number of successful extensions: 32489
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 30637
Number of HSP's gapped (non-prelim): 1389
length of query: 784
length of database: 191,569,459
effective HSP length: 126
effective length of query: 658
effective length of database: 123,577,843
effective search space: 81314220694
effective search space used: 81314220694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)