Query 003946
Match_columns 784
No_of_seqs 540 out of 3319
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 14:48:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.6E-74 3.5E-79 676.0 48.1 580 88-781 119-717 (857)
2 PLN03218 maturation of RBCL 1; 100.0 1.7E-69 3.7E-74 618.8 61.6 524 86-741 366-916 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 6.5E-71 1.4E-75 645.6 47.3 595 87-766 48-651 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.2E-65 2.6E-70 587.2 63.0 521 121-769 366-909 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 4.3E-65 9.3E-70 582.3 50.2 474 89-738 86-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.6E-59 5.6E-64 534.7 41.9 453 196-781 83-554 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-27 2.2E-32 288.1 64.2 573 85-765 324-896 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.2E-27 1.6E-31 280.7 63.8 569 86-767 291-864 (899)
9 PRK11447 cellulose synthase su 99.9 4.8E-18 1E-22 204.7 62.2 519 85-733 176-739 (1157)
10 PRK11447 cellulose synthase su 99.9 4.1E-18 8.9E-23 205.2 61.6 570 83-734 55-700 (1157)
11 PRK11788 tetratricopeptide rep 99.9 9.4E-19 2E-23 187.9 35.6 306 261-666 43-354 (389)
12 PRK11788 tetratricopeptide rep 99.9 2.9E-18 6.2E-23 184.2 36.4 277 450-741 68-354 (389)
13 PRK09782 bacteriophage N4 rece 99.8 8.7E-16 1.9E-20 176.6 56.4 200 78-317 66-276 (987)
14 PRK09782 bacteriophage N4 rece 99.8 1.2E-14 2.7E-19 167.2 62.0 594 93-764 45-701 (987)
15 KOG4626 O-linked N-acetylgluco 99.8 3.5E-17 7.6E-22 166.1 35.5 445 94-677 52-502 (966)
16 KOG4626 O-linked N-acetylgluco 99.8 1.2E-16 2.5E-21 162.4 36.3 441 168-747 85-539 (966)
17 PRK15174 Vi polysaccharide exp 99.8 1.2E-15 2.5E-20 172.0 47.7 382 255-745 44-431 (656)
18 TIGR00990 3a0801s09 mitochondr 99.8 2.4E-14 5.1E-19 162.1 52.7 414 255-734 129-571 (615)
19 PRK15174 Vi polysaccharide exp 99.8 1.2E-14 2.6E-19 163.8 45.3 332 290-734 44-381 (656)
20 TIGR00990 3a0801s09 mitochondr 99.8 2.9E-14 6.2E-19 161.4 47.7 431 92-659 129-571 (615)
21 KOG2002 TPR-containing nuclear 99.8 1.3E-13 2.9E-18 148.1 48.3 321 448-779 449-794 (1018)
22 PRK10049 pgaA outer membrane p 99.7 2.7E-13 5.8E-18 156.4 49.3 410 257-747 19-467 (765)
23 KOG4422 Uncharacterized conser 99.7 5.5E-14 1.2E-18 137.2 36.0 293 448-747 204-565 (625)
24 PRK14574 hmsH outer membrane p 99.7 1.6E-12 3.5E-17 146.8 50.1 462 89-670 33-522 (822)
25 PRK10049 pgaA outer membrane p 99.7 3.3E-13 7.2E-18 155.6 45.8 416 162-694 12-455 (765)
26 PRK14574 hmsH outer membrane p 99.7 1.2E-12 2.6E-17 147.9 48.4 435 222-746 48-523 (822)
27 KOG2002 TPR-containing nuclear 99.7 1E-11 2.2E-16 134.0 47.7 552 106-755 146-731 (1018)
28 KOG4422 Uncharacterized conser 99.7 2.8E-12 6E-17 125.5 38.0 436 92-659 118-590 (625)
29 KOG4318 Bicoid mRNA stability 99.5 7E-11 1.5E-15 126.0 36.8 618 87-754 22-828 (1088)
30 KOG2003 TPR repeat-containing 99.5 2.9E-10 6.3E-15 112.1 34.7 247 466-729 471-717 (840)
31 KOG0495 HAT repeat protein [RN 99.5 1.7E-08 3.7E-13 104.6 46.9 370 247-733 473-845 (913)
32 PRK10747 putative protoheme IX 99.5 3.5E-10 7.5E-15 120.3 34.9 284 266-657 97-388 (398)
33 KOG1915 Cell cycle control pro 99.5 4.1E-08 8.9E-13 98.1 46.2 505 141-732 86-623 (677)
34 COG2956 Predicted N-acetylgluc 99.4 1E-09 2.2E-14 104.3 31.5 283 463-760 47-335 (389)
35 TIGR00540 hemY_coli hemY prote 99.4 9.8E-10 2.1E-14 117.6 36.0 28 453-480 189-216 (409)
36 KOG2003 TPR repeat-containing 99.4 2.3E-10 5E-15 112.8 27.8 440 258-761 206-714 (840)
37 TIGR00540 hemY_coli hemY prote 99.4 9.1E-10 2E-14 117.8 34.9 293 299-694 95-398 (409)
38 KOG4318 Bicoid mRNA stability 99.4 7.3E-10 1.6E-14 118.4 32.9 458 186-734 11-557 (1088)
39 PF13429 TPR_15: Tetratricopep 99.4 1.8E-12 3.9E-17 131.7 13.1 270 448-733 6-276 (280)
40 KOG0495 HAT repeat protein [RN 99.4 9.4E-08 2E-12 99.3 46.7 500 83-694 373-879 (913)
41 PRK10747 putative protoheme IX 99.4 2.1E-09 4.5E-14 114.4 36.4 259 454-733 121-389 (398)
42 PF13429 TPR_15: Tetratricopep 99.4 3.3E-12 7.1E-17 129.7 13.1 186 462-657 88-275 (280)
43 KOG2076 RNA polymerase III tra 99.3 3.8E-08 8.2E-13 106.3 40.7 370 261-733 148-554 (895)
44 KOG2076 RNA polymerase III tra 99.3 3.1E-08 6.8E-13 106.9 39.8 329 298-732 149-510 (895)
45 KOG1126 DNA-binding cell divis 99.3 1.1E-09 2.3E-14 114.4 27.7 271 452-741 354-627 (638)
46 KOG0547 Translocase of outer m 99.3 5.8E-08 1.3E-12 97.6 37.2 398 256-733 118-565 (606)
47 COG3071 HemY Uncharacterized e 99.3 2.3E-08 5.1E-13 98.4 33.6 287 266-659 97-390 (400)
48 KOG1126 DNA-binding cell divis 99.3 1.2E-09 2.7E-14 113.9 25.8 199 448-659 418-620 (638)
49 PF13041 PPR_2: PPR repeat fam 99.3 4.4E-12 9.5E-17 89.9 5.5 50 251-300 1-50 (50)
50 PF13041 PPR_2: PPR repeat fam 99.3 8.9E-12 1.9E-16 88.2 6.5 50 628-677 1-50 (50)
51 KOG1915 Cell cycle control pro 99.3 3.1E-07 6.7E-12 92.0 39.9 435 222-747 87-547 (677)
52 COG2956 Predicted N-acetylgluc 99.3 4.6E-08 1E-12 93.3 32.0 291 266-657 48-345 (389)
53 KOG1155 Anaphase-promoting com 99.3 6.1E-07 1.3E-11 89.9 40.9 286 448-747 259-547 (559)
54 COG3071 HemY Uncharacterized e 99.2 5.3E-08 1.1E-12 96.0 31.5 287 463-767 96-388 (400)
55 TIGR02521 type_IV_pilW type IV 99.2 7.8E-09 1.7E-13 102.0 27.0 201 523-733 31-231 (234)
56 KOG2047 mRNA splicing factor [ 99.2 7.2E-06 1.6E-10 85.6 47.1 470 165-694 102-614 (835)
57 KOG1155 Anaphase-promoting com 99.2 1.6E-06 3.4E-11 87.0 39.7 164 452-622 331-494 (559)
58 KOG0547 Translocase of outer m 99.2 7.8E-07 1.7E-11 89.7 36.7 222 462-694 337-565 (606)
59 TIGR02521 type_IV_pilW type IV 99.2 3.5E-08 7.6E-13 97.3 27.8 200 451-694 31-231 (234)
60 KOG2047 mRNA splicing factor [ 99.1 8.1E-06 1.8E-10 85.2 44.0 494 105-673 90-630 (835)
61 KOG1173 Anaphase-promoting com 99.1 1.4E-06 3E-11 89.7 37.1 230 453-693 280-516 (611)
62 KOG1156 N-terminal acetyltrans 99.1 2.2E-05 4.7E-10 82.5 46.2 380 250-747 72-479 (700)
63 PRK12370 invasion protein regu 99.1 5.9E-08 1.3E-12 108.1 29.3 163 450-621 337-500 (553)
64 PRK12370 invasion protein regu 99.1 8.1E-08 1.8E-12 106.9 29.7 265 450-734 255-535 (553)
65 KOG1173 Anaphase-promoting com 99.1 4.5E-06 9.9E-11 86.0 38.6 287 448-752 241-534 (611)
66 PF12569 NARP1: NMDA receptor- 99.0 1.7E-06 3.6E-11 93.1 33.5 293 295-695 11-334 (517)
67 KOG3785 Uncharacterized conser 99.0 9.2E-06 2E-10 78.6 33.9 152 169-354 61-213 (557)
68 KOG1174 Anaphase-promoting com 99.0 5.4E-05 1.2E-09 75.1 38.7 401 87-658 94-499 (564)
69 KOG1840 Kinesin light chain [C 98.9 4.3E-07 9.3E-12 96.3 26.2 242 490-732 201-477 (508)
70 KOG3785 Uncharacterized conser 98.9 9.9E-06 2.1E-10 78.4 32.5 203 528-745 290-499 (557)
71 KOG2376 Signal recognition par 98.9 2.4E-05 5.2E-10 81.2 36.8 441 128-693 12-518 (652)
72 KOG1129 TPR repeat-containing 98.9 1.7E-07 3.7E-12 89.4 19.0 203 448-658 253-457 (478)
73 KOG1840 Kinesin light chain [C 98.9 1.4E-06 2.9E-11 92.6 27.0 241 452-694 200-478 (508)
74 PF12569 NARP1: NMDA receptor- 98.9 4.2E-06 9.2E-11 90.0 30.8 261 458-736 11-293 (517)
75 KOG1129 TPR repeat-containing 98.9 2.6E-07 5.6E-12 88.2 18.4 229 455-733 227-457 (478)
76 KOG4162 Predicted calmodulin-b 98.8 0.00018 3.9E-09 77.4 39.0 129 561-695 653-783 (799)
77 PRK11189 lipoprotein NlpI; Pro 98.8 8E-06 1.7E-10 83.2 28.5 232 503-747 41-277 (296)
78 COG3063 PilF Tfp pilus assembl 98.8 8.7E-06 1.9E-10 74.7 24.7 206 528-746 40-246 (250)
79 KOG1174 Anaphase-promoting com 98.8 0.0001 2.3E-09 73.2 33.4 198 453-658 196-396 (564)
80 KOG1156 N-terminal acetyltrans 98.7 0.00042 9E-09 73.2 38.9 398 256-734 11-434 (700)
81 cd05804 StaR_like StaR_like; a 98.7 5.3E-05 1.2E-09 80.1 34.1 275 451-734 6-293 (355)
82 PRK11189 lipoprotein NlpI; Pro 98.7 1.5E-05 3.2E-10 81.2 28.0 62 452-516 99-160 (296)
83 cd05804 StaR_like StaR_like; a 98.7 0.00011 2.3E-09 77.8 35.2 266 460-733 52-335 (355)
84 KOG1127 TPR repeat-containing 98.6 0.00015 3.3E-09 79.9 33.6 584 105-734 473-1104(1238)
85 KOG3616 Selective LIM binding 98.6 0.00016 3.6E-09 76.6 32.6 224 458-730 739-962 (1636)
86 COG3063 PilF Tfp pilus assembl 98.6 4.7E-05 1E-09 70.0 24.9 195 494-694 41-235 (250)
87 PF12854 PPR_1: PPR repeat 98.6 5.7E-08 1.2E-12 61.5 3.9 32 248-279 2-33 (34)
88 PF12854 PPR_1: PPR repeat 98.6 7E-08 1.5E-12 61.1 3.9 31 519-549 3-33 (34)
89 KOG4162 Predicted calmodulin-b 98.6 0.0014 3.1E-08 70.7 37.5 443 88-622 321-782 (799)
90 PRK04841 transcriptional regul 98.5 0.00062 1.4E-08 81.9 39.8 275 458-735 459-761 (903)
91 KOG3617 WD40 and TPR repeat-co 98.5 0.00026 5.7E-09 76.2 30.8 361 164-655 725-1105(1416)
92 KOG4340 Uncharacterized conser 98.5 4.2E-05 9E-10 72.5 22.3 55 500-555 156-210 (459)
93 KOG2376 Signal recognition par 98.5 0.0023 5.1E-08 67.0 42.4 214 87-340 43-276 (652)
94 KOG3616 Selective LIM binding 98.5 0.0012 2.6E-08 70.4 34.6 165 454-654 768-932 (1636)
95 KOG0985 Vesicle coat protein c 98.5 0.0026 5.6E-08 70.5 38.0 450 96-726 903-1375(1666)
96 KOG4340 Uncharacterized conser 98.5 8.1E-05 1.7E-09 70.6 23.5 198 255-520 12-210 (459)
97 PF04733 Coatomer_E: Coatomer 98.5 3.6E-06 7.7E-11 84.4 15.7 249 461-733 11-264 (290)
98 PF04733 Coatomer_E: Coatomer 98.5 6.8E-06 1.5E-10 82.4 16.5 235 496-751 9-247 (290)
99 KOG0985 Vesicle coat protein c 98.4 0.0063 1.4E-07 67.6 40.0 216 77-349 971-1189(1666)
100 KOG0624 dsRNA-activated protei 98.4 0.0021 4.5E-08 62.7 30.1 212 89-354 37-251 (504)
101 PRK04841 transcriptional regul 98.4 0.0025 5.4E-08 76.8 39.0 316 260-660 416-761 (903)
102 KOG1070 rRNA processing protei 98.3 0.00041 8.8E-09 79.3 26.2 132 454-589 1533-1665(1710)
103 KOG1128 Uncharacterized conser 98.3 0.00034 7.3E-09 74.9 24.3 239 285-641 395-634 (777)
104 KOG1125 TPR repeat-containing 98.3 0.00013 2.9E-09 75.9 20.9 257 460-727 294-564 (579)
105 PLN02789 farnesyltranstransfer 98.3 0.0013 2.9E-08 66.9 28.0 182 452-642 72-267 (320)
106 TIGR03302 OM_YfiO outer membra 98.3 0.00024 5.2E-09 70.0 22.2 189 449-659 31-232 (235)
107 KOG1127 TPR repeat-containing 98.3 0.016 3.5E-07 64.7 41.4 566 80-764 586-1205(1238)
108 PLN02789 farnesyltranstransfer 98.2 0.0014 3.1E-08 66.7 27.4 32 450-481 141-172 (320)
109 COG4783 Putative Zn-dependent 98.2 0.0012 2.5E-08 67.9 26.1 249 461-747 212-466 (484)
110 KOG1914 mRNA cleavage and poly 98.2 0.011 2.4E-07 61.5 38.5 152 574-734 347-501 (656)
111 KOG1070 rRNA processing protei 98.2 0.0012 2.5E-08 75.8 28.1 132 597-738 1533-1667(1710)
112 TIGR03302 OM_YfiO outer membra 98.2 0.00027 5.9E-09 69.7 20.9 187 486-694 31-231 (235)
113 KOG0624 dsRNA-activated protei 98.1 0.011 2.3E-07 57.9 33.2 207 456-694 160-369 (504)
114 KOG3081 Vesicle coat complex C 98.1 0.0035 7.5E-08 59.2 24.9 216 458-694 15-235 (299)
115 KOG1125 TPR repeat-containing 98.1 0.00038 8.3E-09 72.6 20.6 226 450-686 318-562 (579)
116 KOG3617 WD40 and TPR repeat-co 98.1 0.026 5.6E-07 61.6 42.1 220 87-354 723-966 (1416)
117 TIGR00756 PPR pentatricopeptid 98.1 7.5E-06 1.6E-10 52.7 4.6 34 632-665 2-35 (35)
118 KOG1128 Uncharacterized conser 98.0 0.00047 1E-08 73.8 20.0 222 448-696 395-617 (777)
119 KOG3060 Uncharacterized conser 98.0 0.0042 9.2E-08 58.2 23.6 160 564-734 58-220 (289)
120 TIGR00756 PPR pentatricopeptid 98.0 8.4E-06 1.8E-10 52.5 4.4 34 707-740 2-35 (35)
121 PRK10370 formate-dependent nit 98.0 0.0013 2.8E-08 62.2 20.8 99 557-659 72-173 (198)
122 PRK14720 transcript cleavage f 98.0 0.004 8.6E-08 70.9 27.8 81 453-552 118-198 (906)
123 PRK15179 Vi polysaccharide bio 98.0 0.0041 8.9E-08 70.1 27.9 202 449-672 26-229 (694)
124 KOG1914 mRNA cleavage and poly 98.0 0.029 6.3E-07 58.5 38.2 212 505-721 310-526 (656)
125 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.8E-10 51.2 4.3 33 631-663 2-34 (34)
126 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.3E-10 50.9 4.4 33 706-738 2-34 (34)
127 KOG0548 Molecular co-chaperone 97.9 0.043 9.3E-07 57.4 36.4 105 98-210 10-114 (539)
128 KOG0548 Molecular co-chaperone 97.9 0.043 9.3E-07 57.3 34.1 104 173-298 10-114 (539)
129 PRK15359 type III secretion sy 97.9 0.00078 1.7E-08 60.1 15.9 99 561-665 27-125 (144)
130 COG4783 Putative Zn-dependent 97.9 0.0046 9.9E-08 63.7 22.7 191 448-668 271-462 (484)
131 COG5010 TadD Flp pilus assembl 97.9 0.0028 6.1E-08 60.0 19.6 160 492-657 70-229 (257)
132 COG5010 TadD Flp pilus assembl 97.9 0.002 4.4E-08 60.9 18.5 160 455-621 70-229 (257)
133 PRK15359 type III secretion sy 97.8 0.0013 2.8E-08 58.8 16.0 95 454-552 27-121 (144)
134 PRK10370 formate-dependent nit 97.8 0.0013 2.7E-08 62.3 16.4 118 502-623 53-173 (198)
135 KOG3081 Vesicle coat complex C 97.8 0.033 7.2E-07 52.9 24.7 221 455-694 45-270 (299)
136 PF01535 PPR: PPR repeat; Int 97.7 3.7E-05 8.1E-10 47.8 3.2 30 632-661 2-31 (31)
137 PRK15179 Vi polysaccharide bio 97.7 0.0068 1.5E-07 68.4 23.1 184 448-644 83-269 (694)
138 PRK14720 transcript cleavage f 97.7 0.027 5.8E-07 64.5 27.5 58 491-550 119-176 (906)
139 PF01535 PPR: PPR repeat; Int 97.7 4.5E-05 9.8E-10 47.4 3.1 31 254-284 1-31 (31)
140 TIGR02552 LcrH_SycD type III s 97.7 0.0024 5.2E-08 56.5 15.5 92 563-658 22-113 (135)
141 PF08579 RPM2: Mitochondrial r 97.6 0.00086 1.9E-08 54.4 10.5 80 453-534 27-115 (120)
142 PF10037 MRP-S27: Mitochondria 97.6 0.00054 1.2E-08 71.4 12.1 124 448-571 63-186 (429)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0021 4.4E-08 66.9 16.2 125 525-658 171-296 (395)
144 TIGR02552 LcrH_SycD type III s 97.6 0.0034 7.4E-08 55.5 15.6 98 489-588 18-115 (135)
145 KOG3060 Uncharacterized conser 97.5 0.02 4.3E-07 53.9 19.4 165 572-747 26-194 (289)
146 PF09976 TPR_21: Tetratricopep 97.5 0.0059 1.3E-07 54.7 15.7 127 597-731 15-144 (145)
147 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0047 1E-07 64.3 16.4 121 455-584 173-294 (395)
148 PF09976 TPR_21: Tetratricopep 97.5 0.0059 1.3E-07 54.7 15.1 129 452-583 13-143 (145)
149 PF08579 RPM2: Mitochondrial r 97.4 0.0037 8.1E-08 50.9 11.6 81 491-571 28-117 (120)
150 PF10037 MRP-S27: Mitochondria 97.4 0.003 6.5E-08 66.0 13.5 123 484-607 62-186 (429)
151 PF05843 Suf: Suppressor of fo 97.3 0.0075 1.6E-07 60.7 14.8 143 596-748 3-148 (280)
152 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.015 3.3E-07 49.8 14.2 60 528-587 44-105 (119)
153 PF04840 Vps16_C: Vps16, C-ter 97.2 0.36 7.9E-06 49.2 25.8 110 525-656 179-288 (319)
154 PF06239 ECSIT: Evolutionarily 97.2 0.0085 1.9E-07 55.3 12.4 89 485-573 44-153 (228)
155 KOG2053 Mitochondrial inherita 97.1 0.66 1.4E-05 52.0 47.0 222 101-357 20-257 (932)
156 cd00189 TPR Tetratricopeptide 97.1 0.011 2.3E-07 47.9 12.2 94 454-551 3-96 (100)
157 PF07079 DUF1347: Protein of u 97.1 0.44 9.5E-06 49.1 43.0 129 605-747 390-532 (549)
158 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.028 6E-07 48.2 14.9 102 452-553 3-106 (119)
159 KOG2041 WD40 repeat protein [G 97.1 0.65 1.4E-05 50.3 27.9 202 450-679 851-1071(1189)
160 cd00189 TPR Tetratricopeptide 97.0 0.013 2.8E-07 47.4 11.9 24 633-656 71-94 (100)
161 PRK10153 DNA-binding transcrip 97.0 0.043 9.4E-07 60.0 18.6 61 631-694 421-481 (517)
162 PF05843 Suf: Suppressor of fo 97.0 0.015 3.2E-07 58.6 14.0 145 490-673 3-148 (280)
163 PRK02603 photosystem I assembl 97.0 0.047 1E-06 50.5 16.0 82 596-679 37-120 (172)
164 KOG2053 Mitochondrial inherita 96.9 1 2.2E-05 50.6 40.4 179 141-350 22-214 (932)
165 PF14938 SNAP: Soluble NSF att 96.9 0.078 1.7E-06 53.6 18.0 144 597-747 117-275 (282)
166 PLN03088 SGT1, suppressor of 96.9 0.023 4.9E-07 59.5 14.4 92 530-624 9-100 (356)
167 PRK10153 DNA-binding transcrip 96.8 0.086 1.9E-06 57.7 18.6 74 591-669 417-490 (517)
168 PF12895 Apc3: Anaphase-promot 96.8 0.0033 7.1E-08 50.1 5.7 18 637-654 65-82 (84)
169 PF12895 Apc3: Anaphase-promot 96.8 0.0034 7.4E-08 50.0 5.8 78 609-690 4-82 (84)
170 PF06239 ECSIT: Evolutionarily 96.7 0.03 6.5E-07 51.8 12.3 100 629-732 46-166 (228)
171 PRK02603 photosystem I assembl 96.7 0.093 2E-06 48.5 15.8 82 526-609 38-121 (172)
172 CHL00033 ycf3 photosystem I as 96.6 0.048 1E-06 50.2 13.2 62 597-658 38-100 (168)
173 PRK10866 outer membrane biogen 96.6 0.83 1.8E-05 44.8 22.6 54 498-552 42-98 (243)
174 PLN03088 SGT1, suppressor of 96.5 0.071 1.5E-06 55.8 15.4 102 458-565 9-110 (356)
175 COG4700 Uncharacterized protei 96.5 0.61 1.3E-05 42.0 18.7 69 520-588 86-154 (251)
176 KOG0553 TPR repeat-containing 96.5 0.039 8.4E-07 53.5 11.6 101 568-674 91-191 (304)
177 PF12921 ATP13: Mitochondrial 96.4 0.085 1.8E-06 45.3 12.4 50 698-747 45-95 (126)
178 PF12688 TPR_5: Tetratrico pep 96.4 0.16 3.4E-06 43.2 13.8 105 637-748 8-114 (120)
179 PF12688 TPR_5: Tetratrico pep 96.4 0.19 4.1E-06 42.7 14.2 20 534-553 12-31 (120)
180 PRK10866 outer membrane biogen 96.4 1.1 2.4E-05 43.9 22.7 81 450-533 31-114 (243)
181 PRK15363 pathogenicity island 96.4 0.19 4.1E-06 44.5 14.5 91 529-622 41-131 (157)
182 KOG1130 Predicted G-alpha GTPa 96.3 0.067 1.5E-06 53.8 12.7 270 460-733 26-343 (639)
183 KOG2041 WD40 repeat protein [G 96.3 2.1 4.7E-05 46.5 29.2 132 178-352 747-878 (1189)
184 CHL00033 ycf3 photosystem I as 96.3 0.063 1.4E-06 49.5 12.1 63 524-586 36-100 (168)
185 PRK15363 pathogenicity island 96.3 0.2 4.3E-06 44.4 14.0 91 456-550 40-130 (157)
186 PF13432 TPR_16: Tetratricopep 96.2 0.023 5.1E-07 42.4 7.2 52 568-621 7-58 (65)
187 PF14559 TPR_19: Tetratricopep 96.1 0.022 4.8E-07 43.0 6.8 22 636-657 31-52 (68)
188 KOG2796 Uncharacterized conser 96.1 0.15 3.2E-06 48.4 12.9 61 491-551 180-240 (366)
189 PF14938 SNAP: Soluble NSF att 96.1 0.8 1.7E-05 46.3 19.8 99 452-550 156-264 (282)
190 PF14559 TPR_19: Tetratricopep 96.0 0.032 6.9E-07 42.1 7.1 52 500-552 3-54 (68)
191 KOG1130 Predicted G-alpha GTPa 96.0 0.35 7.5E-06 49.0 15.6 302 255-586 17-343 (639)
192 PF13414 TPR_11: TPR repeat; P 96.0 0.05 1.1E-06 41.2 8.1 60 559-620 4-64 (69)
193 PF12921 ATP13: Mitochondrial 96.0 0.12 2.6E-06 44.4 11.0 81 451-531 2-96 (126)
194 COG4700 Uncharacterized protei 95.8 1.4 3.1E-05 39.8 18.5 135 555-693 86-220 (251)
195 PF09205 DUF1955: Domain of un 95.7 1.1 2.3E-05 38.0 14.9 138 571-737 15-152 (161)
196 KOG2280 Vacuolar assembly/sort 95.7 4.5 9.7E-05 44.8 25.4 111 596-731 686-796 (829)
197 COG3898 Uncharacterized membra 95.6 3.1 6.7E-05 42.3 28.0 253 462-734 131-392 (531)
198 PF03704 BTAD: Bacterial trans 95.5 0.11 2.3E-06 46.6 9.8 71 453-526 64-139 (146)
199 PF13414 TPR_11: TPR repeat; P 95.5 0.085 1.8E-06 39.9 7.7 63 451-516 3-66 (69)
200 PF13525 YfiO: Outer membrane 95.5 2.4 5.2E-05 40.3 19.9 61 457-517 11-71 (203)
201 KOG0553 TPR repeat-containing 95.5 0.21 4.6E-06 48.6 11.6 86 534-622 92-177 (304)
202 PF13432 TPR_16: Tetratricopep 95.4 0.067 1.4E-06 39.9 6.8 55 296-354 5-59 (65)
203 KOG1538 Uncharacterized conser 95.3 0.61 1.3E-05 50.0 15.3 81 254-349 599-681 (1081)
204 PF04840 Vps16_C: Vps16, C-ter 95.3 4.1 8.8E-05 41.7 26.7 126 596-753 179-304 (319)
205 PRK10803 tol-pal system protei 95.2 0.39 8.5E-06 47.5 13.2 59 526-586 146-208 (263)
206 COG4235 Cytochrome c biogenesi 95.2 0.18 3.9E-06 49.4 10.5 124 79-208 145-268 (287)
207 PF09205 DUF1955: Domain of un 95.2 1.7 3.6E-05 36.9 14.6 66 452-520 87-152 (161)
208 PRK10803 tol-pal system protei 95.2 0.3 6.5E-06 48.3 12.2 101 253-356 143-247 (263)
209 PF13371 TPR_9: Tetratricopept 95.1 0.1 2.2E-06 40.0 7.2 19 568-586 5-23 (73)
210 COG3898 Uncharacterized membra 95.1 4.6 9.9E-05 41.1 31.4 201 451-663 188-396 (531)
211 PF03704 BTAD: Bacterial trans 95.1 0.15 3.2E-06 45.7 9.0 75 632-709 64-140 (146)
212 PF13424 TPR_12: Tetratricopep 95.0 0.18 3.9E-06 39.2 8.4 66 289-354 6-74 (78)
213 KOG2796 Uncharacterized conser 94.9 3.4 7.4E-05 39.6 17.3 133 452-587 178-315 (366)
214 PF13424 TPR_12: Tetratricopep 94.8 0.079 1.7E-06 41.3 5.8 66 666-732 6-73 (78)
215 KOG3941 Intermediate in Toll s 94.8 0.24 5.1E-06 47.5 9.6 103 178-317 85-188 (406)
216 COG4235 Cytochrome c biogenesi 94.7 1.9 4.2E-05 42.4 15.9 101 485-587 153-256 (287)
217 PF13525 YfiO: Outer membrane 94.5 4.5 9.8E-05 38.5 19.3 63 260-322 12-76 (203)
218 KOG0550 Molecular chaperone (D 94.2 7.7 0.00017 39.9 20.1 167 449-624 166-351 (486)
219 smart00299 CLH Clathrin heavy 94.2 2 4.3E-05 38.0 14.2 43 493-536 12-54 (140)
220 PF04184 ST7: ST7 protein; In 94.1 6.5 0.00014 41.7 18.9 80 523-602 259-339 (539)
221 KOG1538 Uncharacterized conser 93.9 3.5 7.5E-05 44.6 16.7 213 453-694 600-845 (1081)
222 PLN03098 LPA1 LOW PSII ACCUMUL 93.9 1.2 2.5E-05 46.8 13.3 63 629-694 74-140 (453)
223 KOG3941 Intermediate in Toll s 93.7 0.46 1E-05 45.7 9.2 73 502-574 86-174 (406)
224 PF13371 TPR_9: Tetratricopept 93.6 0.54 1.2E-05 35.9 8.2 55 460-517 4-58 (73)
225 KOG0550 Molecular chaperone (D 93.5 10 0.00022 39.1 21.7 231 486-753 166-404 (486)
226 PF10300 DUF3808: Protein of u 93.4 3.7 8.1E-05 44.7 16.9 107 471-585 177-294 (468)
227 PLN03098 LPA1 LOW PSII ACCUMUL 93.3 0.94 2E-05 47.4 11.5 65 557-623 74-141 (453)
228 PF13170 DUF4003: Protein of u 93.3 10 0.00022 38.4 19.3 118 610-733 119-249 (297)
229 smart00299 CLH Clathrin heavy 93.3 4.9 0.00011 35.5 15.0 126 454-605 10-136 (140)
230 PF10300 DUF3808: Protein of u 93.3 3.8 8.3E-05 44.7 16.8 132 454-588 191-335 (468)
231 PF08631 SPO22: Meiosis protei 93.2 10 0.00022 38.1 27.1 165 559-731 85-272 (278)
232 PRK11906 transcriptional regul 93.2 6.9 0.00015 41.3 17.4 61 557-619 337-397 (458)
233 PRK11906 transcriptional regul 93.1 4.9 0.00011 42.4 16.2 114 573-694 319-435 (458)
234 KOG1920 IkappaB kinase complex 92.8 19 0.00041 42.5 21.4 105 531-655 947-1051(1265)
235 KOG1585 Protein required for f 92.6 3.1 6.8E-05 39.4 12.5 213 91-350 32-251 (308)
236 PF13281 DUF4071: Domain of un 92.5 6.3 0.00014 40.8 15.9 124 109-232 122-250 (374)
237 PF04053 Coatomer_WDAD: Coatom 92.3 3.8 8.2E-05 44.0 14.8 159 459-655 269-427 (443)
238 PF13170 DUF4003: Protein of u 92.1 15 0.00032 37.2 18.4 132 504-672 78-224 (297)
239 KOG2610 Uncharacterized conser 92.0 15 0.00031 36.8 21.3 152 463-619 115-272 (491)
240 PRK15331 chaperone protein Sic 91.8 5.3 0.00012 35.8 12.6 49 535-584 49-97 (165)
241 COG3118 Thioredoxin domain-con 91.7 11 0.00023 37.3 15.5 121 460-586 143-264 (304)
242 PF04184 ST7: ST7 protein; In 91.7 14 0.00029 39.4 17.1 163 463-641 180-342 (539)
243 COG3118 Thioredoxin domain-con 91.5 15 0.00033 36.2 18.2 147 495-645 141-287 (304)
244 COG3629 DnrI DNA-binding trans 91.5 2.1 4.5E-05 42.3 10.7 81 631-714 154-236 (280)
245 PF08631 SPO22: Meiosis protei 91.5 17 0.00036 36.6 24.3 102 452-558 85-192 (278)
246 COG1729 Uncharacterized protei 91.5 2.2 4.8E-05 41.4 10.7 86 572-659 155-244 (262)
247 COG1747 Uncharacterized N-term 91.3 22 0.00049 37.8 21.8 95 450-551 65-159 (711)
248 PF04053 Coatomer_WDAD: Coatom 91.1 9.1 0.0002 41.2 16.1 158 496-692 269-428 (443)
249 PF13281 DUF4071: Domain of un 91.1 21 0.00046 37.1 21.2 78 492-569 145-228 (374)
250 PF13512 TPR_18: Tetratricopep 91.1 8.2 0.00018 33.7 12.8 80 457-536 16-95 (142)
251 COG5107 RNA14 Pre-mRNA 3'-end 91.1 22 0.00048 37.1 37.5 149 594-751 397-546 (660)
252 COG1729 Uncharacterized protei 90.9 3.7 8.1E-05 39.9 11.7 99 253-355 142-244 (262)
253 KOG1941 Acetylcholine receptor 90.9 16 0.00036 36.9 16.1 130 600-730 128-271 (518)
254 KOG0543 FKBP-type peptidyl-pro 90.7 4.7 0.0001 41.5 12.6 62 559-622 258-319 (397)
255 KOG0543 FKBP-type peptidyl-pro 90.5 7.6 0.00017 40.0 13.9 97 523-622 257-354 (397)
256 PRK15331 chaperone protein Sic 89.9 7.5 0.00016 34.9 11.8 89 459-551 45-133 (165)
257 COG5107 RNA14 Pre-mRNA 3'-end 89.9 28 0.0006 36.4 36.7 150 523-679 397-549 (660)
258 KOG2114 Vacuolar assembly/sort 89.8 33 0.00071 39.0 18.8 179 452-657 335-517 (933)
259 PF13512 TPR_18: Tetratricopep 89.8 10 0.00022 33.2 12.2 71 604-676 20-93 (142)
260 COG0457 NrfG FOG: TPR repeat [ 89.2 21 0.00045 34.0 25.7 124 567-694 139-264 (291)
261 PF13428 TPR_14: Tetratricopep 88.8 1.5 3.3E-05 29.4 5.4 27 561-587 4-30 (44)
262 COG4105 ComL DNA uptake lipopr 88.8 24 0.00052 34.2 19.6 83 486-569 33-117 (254)
263 KOG4570 Uncharacterized conser 88.7 3.5 7.7E-05 40.6 9.5 105 194-317 58-164 (418)
264 PF07035 Mic1: Colon cancer-as 88.7 18 0.0004 32.7 14.9 58 632-694 91-148 (167)
265 COG4785 NlpI Lipoprotein NlpI, 88.6 21 0.00046 33.4 14.9 72 82-157 91-162 (297)
266 KOG2280 Vacuolar assembly/sort 88.3 49 0.0011 37.2 30.1 111 523-654 684-794 (829)
267 COG3629 DnrI DNA-binding trans 87.9 6.1 0.00013 39.1 10.8 75 453-530 155-234 (280)
268 PF10602 RPN7: 26S proteasome 87.8 11 0.00023 34.9 12.0 99 631-733 37-141 (177)
269 KOG4555 TPR repeat-containing 87.3 8.9 0.00019 32.6 9.7 92 639-735 52-145 (175)
270 PF13428 TPR_14: Tetratricopep 87.1 1.2 2.6E-05 29.9 4.0 36 90-127 1-36 (44)
271 KOG1550 Extracellular protein 86.0 17 0.00036 40.8 14.5 183 467-661 228-428 (552)
272 PF13176 TPR_7: Tetratricopept 85.1 2.1 4.6E-05 27.2 4.2 25 633-657 2-26 (36)
273 PF13176 TPR_7: Tetratricopept 84.8 2.1 4.6E-05 27.2 4.1 26 707-732 1-26 (36)
274 KOG2066 Vacuolar assembly/sort 83.9 82 0.0018 35.7 25.8 95 222-338 370-467 (846)
275 PF09613 HrpB1_HrpK: Bacterial 83.8 32 0.00069 30.8 12.5 52 606-659 22-73 (160)
276 PF02284 COX5A: Cytochrome c o 83.7 9.3 0.0002 30.9 7.9 60 271-334 28-87 (108)
277 KOG4555 TPR repeat-containing 83.7 27 0.00058 29.8 11.7 55 532-587 52-106 (175)
278 COG0457 NrfG FOG: TPR repeat [ 83.2 42 0.00091 31.7 31.0 223 502-734 37-265 (291)
279 COG4785 NlpI Lipoprotein NlpI, 82.7 43 0.00094 31.5 14.7 163 560-734 101-266 (297)
280 PF10602 RPN7: 26S proteasome 82.7 14 0.00031 34.0 10.3 97 452-550 37-140 (177)
281 COG4105 ComL DNA uptake lipopr 82.5 50 0.0011 32.1 24.0 83 451-534 35-117 (254)
282 PF13762 MNE1: Mitochondrial s 82.1 23 0.00049 31.2 10.5 113 88-212 12-127 (145)
283 KOG2114 Vacuolar assembly/sort 82.1 1E+02 0.0022 35.3 30.6 54 259-313 403-456 (933)
284 cd00923 Cyt_c_Oxidase_Va Cytoc 81.8 11 0.00024 30.1 7.6 53 268-320 22-74 (103)
285 KOG1585 Protein required for f 81.2 54 0.0012 31.6 17.4 25 291-315 34-58 (308)
286 KOG2610 Uncharacterized conser 81.1 65 0.0014 32.5 17.6 118 501-622 116-237 (491)
287 PF07035 Mic1: Colon cancer-as 81.0 43 0.00094 30.4 14.4 136 186-357 15-151 (167)
288 PF14669 Asp_Glu_race_2: Putat 81.0 45 0.00099 30.6 15.3 182 517-730 2-206 (233)
289 PF13929 mRNA_stabil: mRNA sta 80.6 23 0.00049 35.1 11.0 125 102-236 140-266 (292)
290 KOG4570 Uncharacterized conser 79.1 11 0.00024 37.3 8.3 105 447-553 60-165 (418)
291 PF00515 TPR_1: Tetratricopept 78.9 5.3 0.00011 24.7 4.4 28 706-733 2-29 (34)
292 PF00515 TPR_1: Tetratricopept 78.4 5.4 0.00012 24.6 4.3 27 632-658 3-29 (34)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 77.6 19 0.00041 28.9 7.6 48 646-694 23-70 (103)
294 PF07719 TPR_2: Tetratricopept 76.6 6.7 0.00015 24.1 4.4 28 706-733 2-29 (34)
295 PF13431 TPR_17: Tetratricopep 76.6 3.3 7.2E-05 25.9 2.8 20 630-649 13-32 (34)
296 PF02259 FAT: FAT domain; Int 76.2 1E+02 0.0022 32.0 18.2 95 247-355 116-213 (352)
297 KOG0687 26S proteasome regulat 75.8 93 0.002 31.3 15.2 37 633-669 107-147 (393)
298 PF13374 TPR_10: Tetratricopep 74.9 7.6 0.00016 25.2 4.5 27 632-658 4-30 (42)
299 PF13374 TPR_10: Tetratricopep 74.7 7.5 0.00016 25.2 4.5 28 706-733 3-30 (42)
300 PF04097 Nic96: Nup93/Nic96; 74.0 1.7E+02 0.0036 33.4 18.4 78 88-171 110-191 (613)
301 COG4649 Uncharacterized protei 74.0 70 0.0015 29.0 15.3 139 452-592 60-201 (221)
302 PF09613 HrpB1_HrpK: Bacterial 73.5 69 0.0015 28.8 12.3 89 459-553 18-107 (160)
303 TIGR02561 HrpB1_HrpK type III 72.6 68 0.0015 28.3 10.7 60 147-212 29-88 (153)
304 PF13431 TPR_17: Tetratricopep 71.9 3 6.5E-05 26.1 1.7 28 83-110 6-33 (34)
305 KOG0991 Replication factor C, 71.6 97 0.0021 29.7 14.0 110 640-755 169-286 (333)
306 PF00637 Clathrin: Region in C 71.4 2.7 5.9E-05 37.2 2.1 89 168-281 10-98 (143)
307 PF04097 Nic96: Nup93/Nic96; 71.3 1.9E+02 0.0041 33.0 26.8 50 252-302 110-159 (613)
308 KOG0276 Vesicle coat complex C 71.2 94 0.002 34.1 13.2 100 534-656 648-747 (794)
309 PF02284 COX5A: Cytochrome c o 70.4 27 0.00058 28.4 7.0 44 507-550 29-72 (108)
310 KOG4234 TPR repeat-containing 70.1 46 0.001 30.9 9.3 88 533-624 105-198 (271)
311 COG4649 Uncharacterized protei 70.1 86 0.0019 28.5 14.6 64 524-588 60-124 (221)
312 PF11207 DUF2989: Protein of u 70.1 34 0.00073 32.0 8.7 78 462-543 118-198 (203)
313 PF11207 DUF2989: Protein of u 69.2 35 0.00077 31.8 8.7 82 263-346 117-198 (203)
314 PF07719 TPR_2: Tetratricopept 68.9 13 0.00028 22.8 4.3 26 633-658 4-29 (34)
315 KOG1920 IkappaB kinase complex 68.8 2.7E+02 0.0058 33.6 30.0 110 597-732 942-1053(1265)
316 KOG4642 Chaperone-dependent E3 68.3 93 0.002 29.9 11.1 120 607-732 23-144 (284)
317 COG4455 ImpE Protein of avirul 67.9 37 0.00081 32.0 8.4 77 453-532 3-81 (273)
318 PF07079 DUF1347: Protein of u 67.3 1.8E+02 0.0038 31.0 40.9 252 92-354 48-326 (549)
319 PF10366 Vps39_1: Vacuolar sor 65.3 71 0.0015 26.6 9.1 26 633-658 42-67 (108)
320 PF06552 TOM20_plant: Plant sp 64.8 45 0.00098 30.5 8.2 79 649-735 54-137 (186)
321 PF13181 TPR_8: Tetratricopept 64.4 14 0.0003 22.7 3.8 28 706-733 2-29 (34)
322 PF13762 MNE1: Mitochondrial s 64.2 72 0.0016 28.1 9.2 46 632-677 81-127 (145)
323 PF07721 TPR_4: Tetratricopept 63.8 9.8 0.00021 22.0 2.7 22 708-729 4-25 (26)
324 COG4455 ImpE Protein of avirul 63.6 52 0.0011 31.1 8.5 62 255-317 3-64 (273)
325 KOG0890 Protein kinase of the 62.9 4.7E+02 0.01 34.4 31.2 62 665-734 1670-1731(2382)
326 PF11848 DUF3368: Domain of un 62.6 26 0.00057 24.0 5.0 35 714-748 11-45 (48)
327 PRK15180 Vi polysaccharide bio 62.1 1E+02 0.0022 32.7 11.1 132 555-692 286-417 (831)
328 KOG4077 Cytochrome c oxidase, 61.8 47 0.001 28.2 7.1 52 271-322 67-118 (149)
329 PF00637 Clathrin: Region in C 61.7 1.9 4.2E-05 38.2 -0.9 53 495-547 14-66 (143)
330 PF13929 mRNA_stabil: mRNA sta 61.1 1.8E+02 0.0039 29.0 17.7 102 615-717 187-290 (292)
331 KOG3807 Predicted membrane pro 60.3 1.2E+02 0.0026 30.6 10.8 122 463-599 228-352 (556)
332 TIGR03504 FimV_Cterm FimV C-te 59.9 18 0.0004 24.3 3.7 25 711-735 5-29 (44)
333 KOG4648 Uncharacterized conser 57.9 53 0.0012 33.1 8.0 52 532-585 106-158 (536)
334 TIGR02508 type_III_yscG type I 56.8 1.1E+02 0.0023 25.0 8.3 84 467-560 21-104 (115)
335 PF11663 Toxin_YhaV: Toxin wit 56.8 14 0.00031 31.6 3.5 33 175-209 105-137 (140)
336 KOG0276 Vesicle coat complex C 55.2 1.4E+02 0.003 32.9 11.0 134 525-694 616-749 (794)
337 PF13181 TPR_8: Tetratricopept 54.4 37 0.0008 20.7 4.5 27 632-658 3-29 (34)
338 KOG1258 mRNA processing protei 53.4 3.5E+02 0.0076 29.9 34.0 381 263-720 89-490 (577)
339 COG3947 Response regulator con 52.6 2.5E+02 0.0055 28.0 16.9 75 633-709 282-357 (361)
340 COG2976 Uncharacterized protei 52.2 1.8E+02 0.0038 27.2 9.8 88 458-552 96-188 (207)
341 TIGR03504 FimV_Cterm FimV C-te 51.4 20 0.00042 24.1 2.8 25 171-195 5-29 (44)
342 KOG4648 Uncharacterized conser 51.1 46 0.001 33.5 6.4 87 262-354 106-193 (536)
343 PF13174 TPR_6: Tetratricopept 51.1 36 0.00077 20.4 4.0 21 296-316 8-28 (33)
344 KOG2063 Vacuolar assembly/sort 50.4 4.5E+02 0.0097 31.2 14.9 117 452-570 505-638 (877)
345 COG3947 Response regulator con 49.6 2.8E+02 0.0061 27.7 17.0 72 667-744 281-357 (361)
346 TIGR02561 HrpB1_HrpK type III 49.5 1.9E+02 0.0041 25.7 11.4 61 524-588 8-74 (153)
347 PF11848 DUF3368: Domain of un 49.4 65 0.0014 22.1 5.2 34 640-673 12-45 (48)
348 PF07163 Pex26: Pex26 protein; 48.2 2.3E+02 0.005 28.1 10.4 89 456-546 88-181 (309)
349 PF07163 Pex26: Pex26 protein; 47.8 2.3E+02 0.0049 28.2 10.3 16 637-652 90-105 (309)
350 PF11846 DUF3366: Domain of un 47.5 72 0.0016 29.9 7.3 56 677-738 120-175 (193)
351 PF14689 SPOB_a: Sensor_kinase 47.5 46 0.00099 24.4 4.5 44 540-585 7-50 (62)
352 PF13934 ELYS: Nuclear pore co 47.1 2.4E+02 0.0053 27.2 10.8 109 202-340 78-186 (226)
353 PRK10564 maltose regulon perip 46.9 47 0.001 33.1 5.8 46 700-745 251-297 (303)
354 PHA02875 ankyrin repeat protei 46.8 1.5E+02 0.0033 31.7 10.7 52 258-313 37-90 (413)
355 PRK09687 putative lyase; Provi 46.8 3.2E+02 0.0069 27.5 29.3 98 633-747 176-274 (280)
356 PF06552 TOM20_plant: Plant sp 46.7 2.4E+02 0.0051 26.0 10.1 73 576-659 53-136 (186)
357 cd08819 CARD_MDA5_2 Caspase ac 45.4 1.2E+02 0.0026 24.0 6.6 68 271-347 20-87 (88)
358 KOG1464 COP9 signalosome, subu 44.9 3.1E+02 0.0068 26.9 22.2 195 452-653 106-326 (440)
359 PF02259 FAT: FAT domain; Int 44.8 3.7E+02 0.0081 27.7 26.3 66 486-551 144-212 (352)
360 PF11846 DUF3366: Domain of un 44.8 86 0.0019 29.4 7.3 33 626-658 140-172 (193)
361 PF10345 Cohesin_load: Cohesin 44.2 5.4E+02 0.012 29.4 42.0 103 252-355 58-168 (608)
362 PRK10941 hypothetical protein; 43.8 3E+02 0.0066 27.4 11.1 72 562-635 185-256 (269)
363 PF14853 Fis1_TPR_C: Fis1 C-te 43.2 55 0.0012 23.1 4.2 36 711-748 7-42 (53)
364 COG5159 RPN6 26S proteasome re 41.5 3.7E+02 0.008 26.7 14.5 137 259-480 9-154 (421)
365 PRK09687 putative lyase; Provi 40.9 3.9E+02 0.0085 26.8 28.6 234 448-715 34-277 (280)
366 KOG4077 Cytochrome c oxidase, 40.8 2E+02 0.0042 24.7 7.5 45 649-694 68-112 (149)
367 KOG1941 Acetylcholine receptor 40.1 4.4E+02 0.0096 27.3 20.5 19 328-346 45-63 (518)
368 PF14689 SPOB_a: Sensor_kinase 39.9 84 0.0018 23.0 5.0 30 487-516 22-51 (62)
369 PF10579 Rapsyn_N: Rapsyn N-te 39.8 77 0.0017 24.5 4.7 21 328-348 45-65 (80)
370 smart00028 TPR Tetratricopepti 38.2 62 0.0013 18.3 3.7 26 633-658 4-29 (34)
371 cd08819 CARD_MDA5_2 Caspase ac 36.9 2E+02 0.0043 22.8 6.6 14 572-585 50-63 (88)
372 KOG3364 Membrane protein invol 36.2 2.9E+02 0.0064 24.1 10.1 69 556-624 30-101 (149)
373 KOG1464 COP9 signalosome, subu 35.9 4.4E+02 0.0094 25.9 18.1 101 447-547 22-129 (440)
374 PF10579 Rapsyn_N: Rapsyn N-te 35.6 1.3E+02 0.0029 23.3 5.4 47 642-689 18-66 (80)
375 COG1747 Uncharacterized N-term 34.8 6.4E+02 0.014 27.5 26.9 170 485-659 63-234 (711)
376 COG2178 Predicted RNA-binding 34.6 3.9E+02 0.0084 25.0 10.3 18 716-733 132-149 (204)
377 PF09477 Type_III_YscG: Bacter 34.5 2.7E+02 0.0059 23.1 8.1 79 466-553 21-99 (116)
378 PF11838 ERAP1_C: ERAP1-like C 34.3 5.2E+02 0.011 26.3 18.0 110 574-690 146-261 (324)
379 KOG1550 Extracellular protein 34.2 7.2E+02 0.016 28.0 27.0 118 466-589 308-428 (552)
380 COG2909 MalT ATP-dependent tra 33.8 8.5E+02 0.018 28.7 26.8 90 459-550 423-524 (894)
381 PF14853 Fis1_TPR_C: Fis1 C-te 33.4 1.7E+02 0.0036 20.7 5.4 27 638-666 9-35 (53)
382 KOG2066 Vacuolar assembly/sort 33.3 8.1E+02 0.018 28.3 28.2 63 295-360 363-426 (846)
383 PF13934 ELYS: Nuclear pore co 33.1 4.6E+02 0.0099 25.3 10.3 20 494-513 114-133 (226)
384 KOG1586 Protein required for f 32.2 4.8E+02 0.01 25.3 13.8 188 506-745 3-194 (288)
385 PF12862 Apc5: Anaphase-promot 32.2 2.6E+02 0.0056 22.4 7.2 20 567-586 50-69 (94)
386 PRK10564 maltose regulon perip 31.3 92 0.002 31.2 5.1 44 626-669 252-296 (303)
387 PF08311 Mad3_BUB1_I: Mad3/BUB 31.2 3.2E+02 0.0069 23.5 8.0 43 576-618 81-123 (126)
388 KOG0687 26S proteasome regulat 31.2 5.9E+02 0.013 26.0 12.9 135 626-765 66-206 (393)
389 PRK09857 putative transposase; 29.9 3.2E+02 0.0069 27.7 9.0 67 668-740 209-275 (292)
390 PF11663 Toxin_YhaV: Toxin wit 29.8 54 0.0012 28.3 2.8 31 464-498 108-138 (140)
391 COG2976 Uncharacterized protei 29.8 4.7E+02 0.01 24.5 15.1 131 452-588 55-189 (207)
392 PF10366 Vps39_1: Vacuolar sor 29.3 1.1E+02 0.0024 25.5 4.7 26 329-354 42-67 (108)
393 PF09454 Vps23_core: Vps23 cor 29.2 1.7E+02 0.0037 21.7 5.0 51 447-500 4-54 (65)
394 PF09670 Cas_Cas02710: CRISPR- 29.1 7.1E+02 0.015 26.3 12.4 51 607-659 144-198 (379)
395 KOG2908 26S proteasome regulat 29.1 5.9E+02 0.013 26.2 10.1 32 634-665 119-155 (380)
396 KOG4279 Serine/threonine prote 29.0 9.4E+02 0.02 27.7 13.3 22 713-734 374-395 (1226)
397 PF12862 Apc5: Anaphase-promot 28.9 2.5E+02 0.0055 22.4 6.7 57 676-733 9-69 (94)
398 smart00638 LPD_N Lipoprotein N 28.8 8.9E+02 0.019 27.3 26.9 156 449-612 308-478 (574)
399 KOG4567 GTPase-activating prot 28.7 2.8E+02 0.006 28.0 7.7 71 650-730 263-343 (370)
400 COG0735 Fur Fe2+/Zn2+ uptake r 28.4 2.6E+02 0.0057 24.7 7.2 61 512-573 10-70 (145)
401 smart00386 HAT HAT (Half-A-TPR 28.3 1.3E+02 0.0028 17.6 4.0 29 302-334 1-29 (33)
402 PF11817 Foie-gras_1: Foie gra 27.8 5E+02 0.011 25.4 9.8 65 289-353 179-245 (247)
403 PF03745 DUF309: Domain of unk 26.8 2E+02 0.0044 21.0 5.1 48 533-580 9-61 (62)
404 PF09454 Vps23_core: Vps23 cor 26.6 1.3E+02 0.0029 22.3 4.1 49 286-338 6-54 (65)
405 KOG2659 LisH motif-containing 26.4 5.9E+02 0.013 24.5 10.5 61 630-693 26-91 (228)
406 PF04090 RNA_pol_I_TF: RNA pol 26.3 3.1E+02 0.0067 25.8 7.4 62 290-354 43-104 (199)
407 TIGR02508 type_III_yscG type I 26.3 3.7E+02 0.008 22.1 9.0 60 602-669 47-106 (115)
408 PHA02875 ankyrin repeat protei 26.3 2.8E+02 0.006 29.7 8.5 81 258-346 137-219 (413)
409 PF09670 Cas_Cas02710: CRISPR- 25.7 8.2E+02 0.018 25.9 12.8 52 499-551 142-197 (379)
410 COG0735 Fur Fe2+/Zn2+ uptake r 25.5 4E+02 0.0087 23.6 7.8 26 493-518 25-50 (145)
411 cd00280 TRFH Telomeric Repeat 24.2 5.4E+02 0.012 23.9 8.1 32 529-563 117-148 (200)
412 COG5187 RPN7 26S proteasome re 24.1 7.4E+02 0.016 24.8 10.6 155 611-768 55-220 (412)
413 KOG3807 Predicted membrane pro 23.8 7.9E+02 0.017 25.0 14.3 123 500-635 228-352 (556)
414 PF07827 KNTase_C: KNTase C-te 23.2 2E+02 0.0044 25.0 5.0 76 252-341 58-133 (143)
415 COG0790 FOG: TPR repeat, SEL1 22.7 7.8E+02 0.017 24.6 21.2 150 463-624 53-221 (292)
416 COG5108 RPO41 Mitochondrial DN 22.5 4.2E+02 0.0091 29.8 8.4 75 456-533 33-113 (1117)
417 KOG2063 Vacuolar assembly/sort 22.4 1.4E+03 0.03 27.3 18.3 220 524-765 505-758 (877)
418 PF02847 MA3: MA3 domain; Int 21.8 3.7E+02 0.008 22.2 6.7 61 455-519 6-68 (113)
419 COG5108 RPO41 Mitochondrial DN 21.7 5.7E+02 0.012 28.8 9.2 74 493-569 33-114 (1117)
420 PF08311 Mad3_BUB1_I: Mad3/BUB 21.6 5.2E+02 0.011 22.2 9.4 44 306-351 81-124 (126)
421 PF09868 DUF2095: Uncharacteri 21.5 2.4E+02 0.0052 23.5 4.9 44 258-302 66-109 (128)
422 PF11817 Foie-gras_1: Foie gra 21.5 4.8E+02 0.011 25.5 8.4 24 331-354 15-38 (247)
423 KOG0686 COP9 signalosome, subu 21.3 1E+03 0.022 25.3 15.0 94 452-547 151-253 (466)
424 PRK11639 zinc uptake transcrip 21.2 5.3E+02 0.012 23.5 8.0 60 514-574 17-76 (169)
425 KOG2062 26S proteasome regulat 21.1 1.3E+03 0.028 26.6 31.6 157 173-356 67-240 (929)
426 KOG2297 Predicted translation 20.5 9E+02 0.019 24.5 18.3 19 706-724 322-340 (412)
427 KOG4507 Uncharacterized conser 20.1 6.5E+02 0.014 27.9 9.1 60 528-588 647-706 (886)
428 PRK13342 recombination factor 20.0 1.1E+03 0.024 25.3 19.1 37 643-679 243-279 (413)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-74 Score=675.95 Aligned_cols=580 Identities=13% Similarity=0.100 Sum_probs=451.4
Q ss_pred CChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccch
Q 003946 88 RDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEP 167 (784)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (784)
+++.++|.+|..|++.|+++.|+++|++|.+ ||.++|+.++.+|++.|+ .++|++++.+|... +..|+..+
T Consensus 119 ~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~---~~~A~~~f~~M~~~--g~~Pd~~t 189 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGY---FDEALCLYHRMLWA--GVRPDVYT 189 (857)
T ss_pred CCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCC---HHHHHHHHHHHHHc--CCCCChhH
Confidence 4555666666666666666666666666654 566666666666665433 34455566665543 23344555
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccccc
Q 003946 168 LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLI 247 (784)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~ 247 (784)
|+.++.+|++.++++.+.+++..|.+.|+.||+.+||+||.+|++. |++++|..+|+ +|.
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~--------g~~~~A~~lf~--~m~---------- 249 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC--------GDVVSARLVFD--RMP---------- 249 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC--------CCHHHHHHHHh--cCC----------
Confidence 5556666666666666666666666666666666666666666665 55666666666 552
Q ss_pred CCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHH
Q 003946 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQ 327 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 327 (784)
.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..|.+.+...+..
T Consensus 250 --~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~--- 324 (857)
T PLN03077 250 --RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS--- 324 (857)
T ss_pred --CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH---
Confidence 456666666666666666666666666666666666666666666666666666666666666666653332222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchh
Q 003946 328 FYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYE 407 (784)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (784)
+||+||.+|+++|++++|.++|++|..+++++||.++.++...+..
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~---------------------------------- 370 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP---------------------------------- 370 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCH----------------------------------
Confidence 5666666666666666666666666666666666666555444331
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Q 003946 408 DFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD 487 (784)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~ 487 (784)
.++..++..|. ..++.||..||++++.+|++.|++++|.+++..|.+.| +.|+
T Consensus 371 ------------~~A~~lf~~M~-------------~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~~ 423 (857)
T PLN03077 371 ------------DKALETYALME-------------QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG--LISY 423 (857)
T ss_pred ------------HHHHHHHHHHH-------------HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC--CCcc
Confidence 12222222221 12379999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 567 (784)
..+|++||.+|++.|++++|.++|++|.+ +|..+||++|.+|++.|+.++|..+|++|.+ ++.||..||+.+|.+
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 99999999999999999999999999975 5889999999999999999999999999986 589999999999999
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
|++.|+++.+.+++..+.+.|+.+ +..++++|+.+|++.|++++|.++|+.+ .||..+||+||.+|++.|+.+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHH
Confidence 999999999999999999999854 5779999999999999999999999987 369999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003946 648 DAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEV 727 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 727 (784)
+|+++|++|.+.|+.||..||+.+|.+|.+.| ++++|.++|++|.+ +.++.|+..+|++|+++|+++|++++|.++
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~v~ea~~~f~~M~~---~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~ 647 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSG-MVTQGLEYFHSMEE---KYSITPNLKHYACVVDLLGRAGKLTEAYNF 647 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC-hHHHHHHHHHHHHH---HhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999 99999999999984 279999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHH--HHHhcccccC-CchhhHHH----------------HHHHHHHHHHhhHhhh
Q 003946 728 VAMMEEGKMFIDKYKYRTLF--LKYHKTLYKG-KTPKFQTE----------------AQLKKREAALGFKKWL 781 (784)
Q Consensus 728 ~~~m~~~g~~pd~~~~~~li--~~~~~~~~~~-~a~~~~~~----------------~~~~~~e~~~~~~~~~ 781 (784)
+++|. ++||..+|++|+ |..+++.+.+ .+++.+.+ ...++|+++.++|+.|
T Consensus 648 ~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 648 INKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99995 789999999999 7778888877 66665554 5678999999999887
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-69 Score=618.81 Aligned_cols=524 Identities=15% Similarity=0.167 Sum_probs=481.4
Q ss_pred cCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCC-CCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCc
Q 003946 86 QARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGF-PRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLE 164 (784)
Q Consensus 86 ~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 164 (784)
..++...|..++..|++.|++++|+++|++|.+.+.. |+..+++.++..|.+.|. ..+|+.++..|.. ++
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~---~~eAl~lf~~M~~------pd 436 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA---VKEAFRFAKLIRN------PT 436 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCC---HHHHHHHHHHcCC------CC
Confidence 3456788999999999999999999999999998865 667778899999988654 4567777776532 67
Q ss_pred cchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccc
Q 003946 165 KEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNA 244 (784)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~ 244 (784)
..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+||+||.+|++. |++++|.++|+ +|..
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~--------G~vd~A~~vf~--eM~~------ 500 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS--------GKVDAMFEVFH--EMVN------ 500 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--------cCHHHHHHHHH--HHHH------
Confidence 8889999999999999999999999999999999999999999999997 89999999999 9976
Q ss_pred cccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCCC
Q 003946 245 PLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEA---VNLS 321 (784)
Q Consensus 245 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~ 321 (784)
.|+.||.+|||++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+. ..|+
T Consensus 501 --~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 501 --AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred --cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863 2344
Q ss_pred hhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccc
Q 003946 322 DIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIEN 401 (784)
Q Consensus 322 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (784)
.. +|++||.+|+++|++++|.++|++|.+.|
T Consensus 579 ~v----TynaLI~ay~k~G~ldeA~elf~~M~e~g--------------------------------------------- 609 (1060)
T PLN03218 579 HI----TVGALMKACANAGQVDRAKEVYQMIHEYN--------------------------------------------- 609 (1060)
T ss_pred HH----HHHHHHHHHHHCCCHHHHHHHHHHHHHcC---------------------------------------------
Confidence 33 79999999999999999999999999866
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003946 402 HILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKEN 481 (784)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 481 (784)
+.|+..+||++|.+|++.|++++|.++|++|.+.|
T Consensus 610 ---------------------------------------------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 610 ---------------------------------------------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred ---------------------------------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 482 LQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 482 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|+++|++++|.++|++|.+.|+.||..+|
T Consensus 645 --v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 645 --VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred --CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003946 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 641 (784)
|.||.+|++.|++++|+++|++|.+.|+.| +..+|+.++.+|++.|+++.|.++|+.|.+.+ +.||..+|++|+..|.
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~ 800 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999854 58899999999999999999999999998765 8999999999997643
Q ss_pred h----c-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 003946 642 K----K-------------------RLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS 698 (784)
Q Consensus 642 ~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~ 698 (784)
+ + +..++|..+|++|.+.|+.||..||+.++.+++..+ ..+.+..+++.|..
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~-~~~~~~~m~~~m~~---- 875 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPH-DATLRNRLIENLGI---- 875 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccc-cHHHHHHHHHHhcc----
Confidence 2 2 234689999999999999999999999997777777 88888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003946 699 TSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKY 741 (784)
Q Consensus 699 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 741 (784)
.+..|+..+|++||+++.+. .++|..++++|.+.|+.|+..
T Consensus 876 ~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 876 SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 67889999999999998542 478999999999999999996
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.5e-71 Score=645.58 Aligned_cols=595 Identities=14% Similarity=0.160 Sum_probs=518.4
Q ss_pred CCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccc
Q 003946 87 ARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKE 166 (784)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 166 (784)
.+++..+|.+|++|++.|++++|+.+|++|.+.|..|+..+|..++.+|.+.+. ...+..++..+...+ ..++..
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~--~~~~~~ 122 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA---VEEGSRVCSRALSSH--PSLGVR 122 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCC---HHHHHHHHHHHHHcC--CCCCch
Confidence 567888999999999999999999999999999999999999999999987654 455667777776652 235677
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccc
Q 003946 167 PLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPL 246 (784)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~ 246 (784)
.++.|+.+|+++|+++.|.++|++|.+ ||+++||++|.+|++. |.+++|+++|+ +|..
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~--------g~~~~A~~~f~--~M~~-------- 180 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKA--------GYFDEALCLYH--RMLW-------- 180 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhC--------CCHHHHHHHHH--HHHH--------
Confidence 889999999999999999999999974 7999999999999997 89999999999 8865
Q ss_pred cCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHH
Q 003946 247 IAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFR 326 (784)
Q Consensus 247 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~ 326 (784)
.|+.||.+||+++|++|++.++++.+.+++..|.+.|+.||..++++||++|+++|++++|.++|++|...+. .
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~---~--- 254 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC---I--- 254 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCc---c---
Confidence 7899999999999999999999999999999999999999999999999999999999999999999976432 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHH----HHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccc
Q 003946 327 QFYNCLLSCHLKFGDLNSASKMVLEMLQRAK----EARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENH 402 (784)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (784)
+||+||.+|++.|+.++|+++|++|...|+ ++++.++.++...+ .......++..
T Consensus 255 -s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g--------------------~~~~a~~l~~~ 313 (857)
T PLN03077 255 -SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG--------------------DERLGREMHGY 313 (857)
T ss_pred -hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--------------------ChHHHHHHHHH
Confidence 699999999999999999999999999765 34555555544332 22222222222
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhc----CCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 403 ILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEH----GILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAE 478 (784)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 478 (784)
+...+ ..++..+...+..++.+++.++.+. ....||.++||++|.+|++.|++++|.++|++|.
T Consensus 314 ~~~~g------------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 314 VVKTG------------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHHhC------------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 11110 0111122222222222222222111 1147899999999999999999999999999999
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 003946 479 KENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDA 558 (784)
Q Consensus 479 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 558 (784)
+.| +.||..||+++|.+|++.|+++.|.++++.|.+.|+.|+..+||+||++|+++|++++|.++|++|. .+|.
T Consensus 382 ~~g--~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 455 (857)
T PLN03077 382 QDN--VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDV 455 (857)
T ss_pred HhC--CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCe
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999997 5799
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
.+|+++|.+|++.|+.++|+.+|++|.. ++ +|+..||+.++.+|++.|+++.+.+++..+.+.+ +.||..++|+||+
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~-~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g-~~~~~~~~naLi~ 532 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TL-KPNSVTLIAALSACARIGALMCGKEIHAHVLRTG-IGFDGFLPNALLD 532 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC-CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC-CCccceechHHHH
Confidence 9999999999999999999999999986 44 6678999999999999999999999999998765 8899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhc
Q 003946 639 FFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRG 718 (784)
Q Consensus 639 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~ 718 (784)
+|+++|++++|.++|++| .||..+|+++|.+|++.| +.++|.++|++|.+ .|+.||..||+.++.+|++.
T Consensus 533 ~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G-~~~~A~~lf~~M~~----~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHG-KGSMAVELFNRMVE----SGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred HHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHH----cCCCCCcccHHHHHHHHhhc
Confidence 999999999999999987 589999999999999999 99999999999998 79999999999999999999
Q ss_pred CChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhcccccCCchhhHHHH
Q 003946 719 GFFARANEVVAMME-EGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEA 766 (784)
Q Consensus 719 g~~~~A~~l~~~m~-~~g~~pd~~~~~~li~~~~~~~~~~~a~~~~~~~ 766 (784)
|++++|.++|++|. +.|+.||..+|+.++..+.+.+..++|.+.+.++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99999999999999 6799999999999999999999888888877764
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-65 Score=587.23 Aligned_cols=521 Identities=15% Similarity=0.131 Sum_probs=466.8
Q ss_pred CCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCCh
Q 003946 121 GFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPV 200 (784)
Q Consensus 121 ~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 200 (784)
..++...|..++..|++.|+ +++|++++++|... ....++...++.++.+|++.|.+++|..+|+.|.. ||.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~---l~eAl~Lfd~M~~~-gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~ 437 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGR---IKDCIDLLEDMEKR-GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTL 437 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcC---HHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCH
Confidence 34677888899999987654 45688889888765 22223444566789999999999999999999975 899
Q ss_pred HHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhh
Q 003946 201 TAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMP 280 (784)
Q Consensus 201 ~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 280 (784)
.+||.+|.+|++. |++++|.++|+ +|.. .|+.||..+||++|.+|++.|++++|.++|++|.
T Consensus 438 ~Tyn~LL~a~~k~--------g~~e~A~~lf~--~M~~--------~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 438 STFNMLMSVCASS--------QDIDGALRVLR--LVQE--------AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred HHHHHHHHHHHhC--------cCHHHHHHHHH--HHHH--------cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 9999999999997 88999999999 8876 7899999999999999999999999999999999
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 003946 281 RIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVN-LSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEA 359 (784)
Q Consensus 281 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 359 (784)
+.|+.||..||+++|.+|++.|++++|.++|++|.+.+. |+.. +||+||.+|++.|++++|.++|++|...+
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v----TYnsLI~a~~k~G~~deA~~lf~eM~~~~--- 572 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV----VFNALISACGQSGAVDRAFDVLAEMKAET--- 572 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhc---
Confidence 999999999999999999999999999999999988744 4433 79999999999999999999999998742
Q ss_pred HHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 003946 360 RNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVEL 439 (784)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (784)
T Consensus 573 -------------------------------------------------------------------------------- 572 (1060)
T PLN03218 573 -------------------------------------------------------------------------------- 572 (1060)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003946 440 ITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV 519 (784)
Q Consensus 440 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 519 (784)
.++.||.++|+++|.+|++.|++++|.++|++|.+.+ +.|+..+|+++|.+|++.|++++|.++|++|.+.|+
T Consensus 573 -----~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv 645 (1060)
T PLN03218 573 -----HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645 (1060)
T ss_pred -----CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 1268999999999999999999999999999999999 799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHH
Q 003946 520 RASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEM 599 (784)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 599 (784)
.||..+|++||++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.| +..+|++
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~ 724 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNA 724 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998754 5889999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--
Q 003946 600 LVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA-- 677 (784)
Q Consensus 600 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~-- 677 (784)
++.+|++.|++++|.++|++|...+ +.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 725 LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y 803 (1060)
T PLN03218 725 LITALCEGNQLPKALEVLSEMKRLG-LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF 803 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765 8899999999999999999999999999999999999999999999876542
Q ss_pred --cC------------------CCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003946 678 --IG------------------GKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMF 737 (784)
Q Consensus 678 --~g------------------~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 737 (784)
.+ ...++|..+|++|.+ .|+.||..||+.++..+++.+..+.+.+++++|...+..
T Consensus 804 ~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~----~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~ 879 (1060)
T PLN03218 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS----AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS 879 (1060)
T ss_pred HHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC
Confidence 11 034679999999998 899999999999999888999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcccccCCchhhHHHHHHH
Q 003946 738 IDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLK 769 (784)
Q Consensus 738 pd~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 769 (784)
|+..+|++||.++.+. ..+|...+.++...
T Consensus 880 ~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 880 QKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred cchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 9999999999776321 12677766665543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-65 Score=582.28 Aligned_cols=474 Identities=14% Similarity=0.165 Sum_probs=432.0
Q ss_pred ChHHHHHHHHHHHhccchhhHHHHHHHhcccC-CCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccch
Q 003946 89 DPAKLSAEIENAINEHRYGDAWKLYEQHMQMD-GFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEP 167 (784)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (784)
+...|+.+|.+|.+.|++++|+++|++|...+ ..||..+|+.++.+|++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~------------------------------ 135 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIA------------------------------ 135 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh------------------------------
Confidence 45578888888888888888888888877644 34666666666666654
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccccc
Q 003946 168 LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLI 247 (784)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~ 247 (784)
.++++.|.+++..|.+.|+.||..+||.||.+|++. |++++|.++|+ +|.
T Consensus 136 ----------~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~--------g~~~~A~~lf~--~m~---------- 185 (697)
T PLN03081 136 ----------LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC--------GMLIDARRLFD--EMP---------- 185 (697)
T ss_pred ----------CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC--------CCHHHHHHHHh--cCC----------
Confidence 455567788889999999999999999999999997 88999999999 883
Q ss_pred CCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHH
Q 003946 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQ 327 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 327 (784)
.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.+...+..
T Consensus 186 --~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~--- 260 (697)
T PLN03081 186 --ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF--- 260 (697)
T ss_pred --CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce---
Confidence 689999999999999999999999999999999999999999999999999999999999999999875444443
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchh
Q 003946 328 FYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYE 407 (784)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (784)
+||+||++|+++|++++|.++|++|.
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~------------------------------------------------------ 286 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMP------------------------------------------------------ 286 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCC------------------------------------------------------
Confidence 79999999999999999999999875
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Q 003946 408 DFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD 487 (784)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~ 487 (784)
.+|.++||+||.+|++.|++++|.++|++|.+.| +.||
T Consensus 287 ----------------------------------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g--~~pd 324 (697)
T PLN03081 287 ----------------------------------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG--VSID 324 (697)
T ss_pred ----------------------------------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCC
Confidence 4566899999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 567 (784)
..||++++.+|++.|++++|.+++.+|.+.|+.||..+||+||++|+++|++++|.++|++|. .||..+||+||.+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~ 400 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAG 400 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 6899999999999
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
|++.|+.++|+++|++|.+.|+.| +..||++++.+|++.|.+++|.++|+.|.+..++.|+..+|++||++|++.|+++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 999999999999999999999855 5889999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 003946 648 DAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANE 726 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 726 (784)
+|.+++++|. +.||..+|++|+.+|...| +++.|..+++++.+ +.| +..+|+.|+++|++.|++++|.+
T Consensus 480 eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g-~~~~a~~~~~~l~~------~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 480 EAYAMIRRAP---FKPTVNMWAALLTACRIHK-NLELGRLAAEKLYG------MGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHHHHHCC---CCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHhC------CCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 9999998774 7899999999999999999 99999999999875 445 46799999999999999999999
Q ss_pred HHHHHHhCCCCC
Q 003946 727 VVAMMEEGKMFI 738 (784)
Q Consensus 727 l~~~m~~~g~~p 738 (784)
++++|+++|+++
T Consensus 550 v~~~m~~~g~~k 561 (697)
T PLN03081 550 VVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcc
Confidence 999999999864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-59 Score=534.69 Aligned_cols=453 Identities=14% Similarity=0.160 Sum_probs=401.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHH
Q 003946 196 QYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQL 275 (784)
Q Consensus 196 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l 275 (784)
..++..+|+++|.+|++. |++++|+++|+ .|... .+..||..+|+.++.+|++.++++.|.++
T Consensus 83 ~~~~~~~~~~~i~~l~~~--------g~~~~Al~~f~--~m~~~-------~~~~~~~~t~~~ll~a~~~~~~~~~a~~l 145 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVAC--------GRHREALELFE--ILEAG-------CPFTLPASTYDALVEACIALKSIRCVKAV 145 (697)
T ss_pred CCCCceeHHHHHHHHHcC--------CCHHHHHHHHH--HHHhc-------CCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 345778999999999987 88999999999 88530 23689999999999999999999999999
Q ss_pred HHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003946 276 LDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 276 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
+..|.+.|+.||..+|+.++++|++.|++++|.++|++|.+. +.. +||+||.+|++.|++++|.++|++|.+.
T Consensus 146 ~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~---~~~----t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 146 YWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER---NLA----SWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC---Cee----eHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999763 333 6999999999999999999999999986
Q ss_pred HHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHH
Q 003946 356 AKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQK 435 (784)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (784)
|
T Consensus 219 g------------------------------------------------------------------------------- 219 (697)
T PLN03081 219 G------------------------------------------------------------------------------- 219 (697)
T ss_pred C-------------------------------------------------------------------------------
Confidence 5
Q ss_pred HHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003946 436 QVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMH 515 (784)
Q Consensus 436 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 515 (784)
+.||..+|+.++.+|+..|..+.+.+++..+.+.| +.||..+|++||++|++.|++++|.++|++|.
T Consensus 220 -----------~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 220 -----------SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG--VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred -----------CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC--CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 58899999999999999999999999999999988 78999999999999999999999999999986
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHH
Q 003946 516 LAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQ 595 (784)
Q Consensus 516 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 595 (784)
+ +|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++++|.+.|+. ++..
T Consensus 287 ~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~-~d~~ 361 (697)
T PLN03081 287 E----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-LDIV 361 (697)
T ss_pred C----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-CCee
Confidence 4 5889999999999999999999999999999999999999999999999999999999999999999874 4577
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGY 675 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 675 (784)
+|++|+.+|++.|++++|.++|+.|.+ ||+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999864 688899999999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHhcc
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF--LKYHKT 753 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li--~~~~~~ 753 (784)
++.| ++++|.++|+.|.+ +.++.|+..+|++|+++|+++|++++|.+++++| ++.||..+|++|+ |..+++
T Consensus 437 ~~~g-~~~~a~~~f~~m~~---~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 437 RYSG-LSEQGWEIFQSMSE---NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred hcCC-cHHHHHHHHHHHHH---hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 9999 99999999999976 2689999999999999999999999999998877 4789999999999 455555
Q ss_pred cccC-CchhhHHH----------------HHHHHHHHHHhhHhhh
Q 003946 754 LYKG-KTPKFQTE----------------AQLKKREAALGFKKWL 781 (784)
Q Consensus 754 ~~~~-~a~~~~~~----------------~~~~~~e~~~~~~~~~ 781 (784)
.+.+ .+.+.+.+ ...++|+++.++++.|
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5544 33333322 5566888888887665
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-27 Score=288.11 Aligned_cols=573 Identities=13% Similarity=0.025 Sum_probs=452.1
Q ss_pred ccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCc
Q 003946 85 VQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLE 164 (784)
Q Consensus 85 ~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 164 (784)
..+.++..+..+...+...|++++|+..++++.+... .+...+..+...+.+.|+ .++|...+.++... .+ .+
T Consensus 324 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~--~~ 396 (899)
T TIGR02917 324 YAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGD---FEKAAEYLAKATEL-DP--EN 396 (899)
T ss_pred hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc-CC--CC
Confidence 3456778888899999999999999999999987542 345666777777777654 45677788877665 21 24
Q ss_pred cchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccc
Q 003946 165 KEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNA 244 (784)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~ 244 (784)
+..+..+...|...|++++|.+.|+.+.+.... +...+..++..+.+. |++++|..+++ ++.
T Consensus 397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~--------~~~~~A~~~~~--~~~------- 458 (899)
T TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRS--------GQFDKALAAAK--KLE------- 458 (899)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhc--------CCHHHHHHHHH--HHH-------
Confidence 556677888899999999999999999876533 334555666677775 88999999998 663
Q ss_pred cccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhh
Q 003946 245 PLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQ 324 (784)
Q Consensus 245 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 324 (784)
...+++..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+....+.+..
T Consensus 459 --~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 534 (899)
T TIGR02917 459 --KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR- 534 (899)
T ss_pred --HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH-
Confidence 2335567789999999999999999999999998754 334567788889999999999999999999886555444
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccccc
Q 003946 325 FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHIL 404 (784)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (784)
++..+...|.+.|+.++|...|+++...+.... ..+ .
T Consensus 535 ---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------------~~~---~ 571 (899)
T TIGR02917 535 ---AILALAGLYLRTGNEEEAVAWLEKAAELNPQEI-------------------------------------EPA---L 571 (899)
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-------------------------------------hHH---H
Confidence 599999999999999999999999877432000 000 0
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 405 SYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQV 484 (784)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 484 (784)
..+.. ....+....+...+..+. ...+.+...|..+..++...|++++|...|.++.+..
T Consensus 572 ~l~~~---~~~~~~~~~A~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 631 (899)
T TIGR02917 572 ALAQY---YLGKGQLKKALAILNEAA--------------DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--- 631 (899)
T ss_pred HHHHH---HHHCCCHHHHHHHHHHHH--------------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 00000 000011112222222221 1135577899999999999999999999999998776
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL 564 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 564 (784)
+.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+...+...|++++|..+++.+.+.+ ..+...+..+
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 709 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELE 709 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHH
Confidence 5567778889999999999999999999998864 3468899999999999999999999999998875 4577888889
Q ss_pred HHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 003946 565 LQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKR 644 (784)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g 644 (784)
...+...|++++|+..|+++...+ |.+ .++..+...+.+.|++++|.+.++.+.+..+ .+...+..+...|...|
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRA--PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHP--NDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCc
Confidence 999999999999999999998865 443 5777889999999999999999999988653 46788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003946 645 LMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARA 724 (784)
Q Consensus 645 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 724 (784)
+.++|.++|+++.+.. +++..+++.+...+...| + .+|...++++.+.. +-++..+..+...|...|++++|
T Consensus 785 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~-~-~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELK-D-PRALEYAEKALKLA-----PNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC-c-HHHHHHHHHHHhhC-----CCCcHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999863 457888999999999999 8 88999999988732 23567788899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcccccCCchhhHHH
Q 003946 725 NEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTE 765 (784)
Q Consensus 725 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~~~~~~a~~~~~~ 765 (784)
.++++++.+.+. .|..++..+...+.+.+...+|.+.+.+
T Consensus 857 ~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 857 LPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998764 3888888888888877776666665544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=7.2e-27 Score=280.69 Aligned_cols=569 Identities=13% Similarity=0.022 Sum_probs=442.0
Q ss_pred cCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCcc
Q 003946 86 QARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEK 165 (784)
Q Consensus 86 ~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 165 (784)
.+.+...+..+...+...|++++|...|++..+..+ .+...+..+...+.+.|+ ..+|...+..+... .+.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~---~~~~~ 363 (899)
T TIGR02917 291 APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGR---VDEAIATLSPALGL---DPDDP 363 (899)
T ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc---CCCCH
Confidence 344455566667788899999999999999887542 233445566666666554 45677778777665 22356
Q ss_pred chHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccc
Q 003946 166 EPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAP 245 (784)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~ 245 (784)
..+..+...|.+.|++++|.++|+++.+... .+...|..+...+... |++++|.+.|+ +...
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~--------~~~~~A~~~~~--~a~~------- 425 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQ--------GDPSEAIADLE--TAAQ------- 425 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhC--------CChHHHHHHHH--HHHh-------
Confidence 7788899999999999999999999987642 2455666666666665 78888988888 5532
Q ss_pred ccCCCC-chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhh
Q 003946 246 LIAMKP-NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQ 324 (784)
Q Consensus 246 ~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 324 (784)
..| +...+..++..+.+.|++++|..+++.+.+.. +++..++..+...|.+.|++++|.+.|+++.+..+.+..
T Consensus 426 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~- 500 (899)
T TIGR02917 426 ---LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP- 500 (899)
T ss_pred ---hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH-
Confidence 233 34456677888999999999999999998753 557789999999999999999999999999886544443
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH---HHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccc
Q 003946 325 FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAK---EARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIEN 401 (784)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (784)
.+..+...+.+.|++++|.+.|+++.+.+. ..+..+...+..
T Consensus 501 ---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------------- 545 (899)
T TIGR02917 501 ---AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR-------------------------------- 545 (899)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH--------------------------------
Confidence 588899999999999999999999987532 001111000000
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003946 402 HILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKEN 481 (784)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 481 (784)
.+...++...+..+... ...+...+..+...+.+.|++++|..+++++....
T Consensus 546 --------------~~~~~~A~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 546 --------------TGNEEEAVAWLEKAAEL--------------NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred --------------cCCHHHHHHHHHHHHHh--------------CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 01112222222222111 23466788889999999999999999999998765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 482 LQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 482 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
+.+..+|..+...+.+.|++++|...|+.+.+.. +.+...+..+...|.+.|++++|..+|+++.+.. +.+..++
T Consensus 598 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 598 ---PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 6778889999999999999999999999998764 3467889999999999999999999999998764 3467899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003946 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 641 (784)
..+...+...|++++|.++++.+.+.. |++...+..+...+...|++++|.+.|+.+.... |+..++..+...|.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA---PSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHH
Confidence 999999999999999999999998876 6677889999999999999999999999998854 55577888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCh
Q 003946 642 KKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFF 721 (784)
Q Consensus 642 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 721 (784)
+.|++++|.+.++++.+. .+.+...+..+...|...| ++++|...++++.+. .++++..++.+...+...|+
T Consensus 748 ~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQK-DYDKAIKHYRTVVKK-----APDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCc-
Confidence 999999999999999886 3446788888899999999 999999999999873 24578889999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcccccCCchhhHHHHH
Q 003946 722 ARANEVVAMMEEGKMFID-KYKYRTLFLKYHKTLYKGKTPKFQTEAQ 767 (784)
Q Consensus 722 ~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 767 (784)
++|.++++++.+. .|+ ..++..+-..+...++..+|.+.+.++.
T Consensus 820 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 820 PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8899999999875 344 3444444455556565556666655543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=4.8e-18 Score=204.66 Aligned_cols=519 Identities=11% Similarity=0.003 Sum_probs=365.3
Q ss_pred ccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCC----------------CchhHHHHHHHHHhccChhhHHHHH
Q 003946 85 VQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFP----------------RKTLVNKILTSFVESLDSKWLEKAY 148 (784)
Q Consensus 85 ~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p----------------~~~~~~~ll~~~~~~~~~~~~~~a~ 148 (784)
..|.++..+..+...+...|++++|+..++++.+..... +......+-.......+.....++.
T Consensus 176 ~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 176 DYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred hCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 345566777777888888888888888888875532100 0000000111111111112223333
Q ss_pred HHHHHHHHhcccccCccchHH-HHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHh
Q 003946 149 GLVEQAFEEGKQILLEKEPLI-YLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEI 227 (784)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a 227 (784)
..+...... ..+|.... .+...+...|++++|...|++..+.... +...+..+-..|.+. |++++|
T Consensus 256 ~~L~~~~~~----~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~--------g~~~eA 322 (1157)
T PRK11447 256 SQLAEQQKQ----LADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQ--------GDRARA 322 (1157)
T ss_pred HHHHHHHHh----ccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--------CCHHHH
Confidence 444333222 12333322 2355677899999999999999886322 667777777777776 889999
Q ss_pred hhhhccCCcCccccccccccCCCCch---hhHHHH------------HHHhhhcCChhHHHHHHHhhhhCCCCCChhHHH
Q 003946 228 GYLFQDGRVDPRKKCNAPLIAMKPNT---NTFNIA------------LAGCLLFETTRKAEQLLDIMPRIGVKADSNLLI 292 (784)
Q Consensus 228 ~~~~~~~~m~~~~~~~~~~~~~~p~~---~~~~~l------------l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 292 (784)
+..|+ +... ..|+. ..|..+ -..+.+.|++++|+..|++..+.. +.+...+.
T Consensus 323 ~~~l~--~Al~----------~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~ 389 (1157)
T PRK11447 323 VAQFE--KALA----------LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVL 389 (1157)
T ss_pred HHHHH--HHHH----------hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 99988 5532 22321 122222 235668999999999999999864 33556777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 003946 293 IMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNA 372 (784)
Q Consensus 293 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 372 (784)
.+...+...|++++|.+.|+++.+..+.+.. .+..+...|. .++.++|..+++.+......
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~----a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~-------------- 450 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRMDPGNTN----AVRGLANLYR-QQSPEKALAFIASLSASQRR-------------- 450 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH--------------
Confidence 8899999999999999999999987555443 4777777774 56789999888766543210
Q ss_pred hccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHH
Q 003946 373 VGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEK 452 (784)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 452 (784)
....... .....
T Consensus 451 ------------------------------------------------~~~~~~~--------------------~l~~~ 462 (1157)
T PRK11447 451 ------------------------------------------------SIDDIER--------------------SLQND 462 (1157)
T ss_pred ------------------------------------------------HHHHHHH--------------------Hhhhh
Confidence 0000000 00112
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKA 532 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 532 (784)
.+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++.+.+.. +.+...+..+...
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~ 538 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 46667788899999999999999999876 4456677788899999999999999999998754 2345555555566
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH
Q 003946 533 YIEANRPREVTALLRDARSAGIQLDAS---------CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG 603 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~ 603 (784)
+...++.++|...++.+......++.. .+..+...+...|+.++|+.+++. .|++...+..+...
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~ 612 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADW 612 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHH
Confidence 788999999999998875432222221 233456678899999999999872 36667788889999
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCH
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKY 682 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~ 682 (784)
+.+.|++++|.+.|+...+..+- +...+..++..|...|+.++|++.++...+. .| +..++..+..++...| ++
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~P~--~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g-~~ 687 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTREPG--NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALG-DT 687 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCC-CH
Confidence 99999999999999999986542 5677999999999999999999999988764 45 4556677788888999 99
Q ss_pred HHHHHHHHHHHhcccCCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 683 TEVTELWGEMKSFASSTSMNF---DEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 683 ~~a~~~~~~m~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
++|..+++++....++ -.| +...+..+...+...|++++|.+.+++...
T Consensus 688 ~eA~~~~~~al~~~~~--~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 688 AAAQRTFNRLIPQAKS--QPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHhhhCcc--CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999998873211 122 335677778999999999999999998863
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=4.1e-18 Score=205.24 Aligned_cols=570 Identities=11% Similarity=0.016 Sum_probs=339.3
Q ss_pred ccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHH-----------------HHHHHHhccChhhHH
Q 003946 83 ILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNK-----------------ILTSFVESLDSKWLE 145 (784)
Q Consensus 83 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~-----------------ll~~~~~~~~~~~~~ 145 (784)
....+.||..+..+++.+.+.|+.++|.+.+++..+.. |+...+.. +...+.+. ++.+
T Consensus 55 ~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~---g~~~ 129 (1157)
T PRK11447 55 ELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATT---GRTE 129 (1157)
T ss_pred HccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhC---CCHH
Confidence 45567789999999999999999999999999999866 55543321 11123333 4566
Q ss_pred HHHHHHHHHHHhcccccCccch-HHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHH
Q 003946 146 KAYGLVEQAFEEGKQILLEKEP-LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELI 224 (784)
Q Consensus 146 ~a~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 224 (784)
+|...+..++.. . ++++.. ..+........|+.++|.+.++++.+.... +...+..+-..+... |+.
T Consensus 130 eA~~~~~~~l~~-~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~--------g~~ 197 (1157)
T PRK11447 130 EALASYDKLFNG-A--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSS--------GRR 197 (1157)
T ss_pred HHHHHHHHHccC-C--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHcc--------CCH
Confidence 788888887664 1 112221 112222233469999999999999987322 445555666666554 788
Q ss_pred HHhhhhhccCCcCcccccc--------ccc--cCCCC-chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHH
Q 003946 225 LEIGYLFQDGRVDPRKKCN--------APL--IAMKP-NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLII 293 (784)
Q Consensus 225 ~~a~~~~~~~~m~~~~~~~--------~~~--~~~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 293 (784)
++|+..++ ++....... +.+ .+..| ....+...+..+-.....+.|...+..+.+..-.|+... ..
T Consensus 198 ~eAl~~l~--~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~ 274 (1157)
T PRK11447 198 DEGFAVLE--QMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RA 274 (1157)
T ss_pred HHHHHHHH--HHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HH
Confidence 88988888 653200000 000 00011 111233333333333345566666766554432343322 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 003946 294 MAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAV 373 (784)
Q Consensus 294 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 373 (784)
....+...|++++|...|++..+..+.+.. ++..|...|.+.|++++|+..|++..+.+.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~----a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p---------------- 334 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSE----ALGALGQAYSQQGDRARAVAQFEKALALDP---------------- 334 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------
Confidence 456678899999999999999886554444 689999999999999999999999887431
Q ss_pred ccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHH
Q 003946 374 GVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKI 453 (784)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 453 (784)
+. .....|..++....+ ........... ...........+.......+.+...
T Consensus 335 --~~-----------------~~~~~~~~ll~~~~~------~~~~~~g~~~~--~~g~~~eA~~~~~~Al~~~P~~~~a 387 (1157)
T PRK11447 335 --HS-----------------SNRDKWESLLKVNRY------WLLIQQGDAAL--KANNLAQAERLYQQARQVDNTDSYA 387 (1157)
T ss_pred --Cc-----------------cchhHHHHHHHhhhH------HHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 00 000000000000000 00000000000 0001111111122222212235667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------CCHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR--------ASSSV 525 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------~~~~~ 525 (784)
+..+...+...|++++|.+.|++..+.. +.+...+..+...+. .++.++|..+++.+....-. .....
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~---p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMD---PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence 7788888888899999999998888765 444555655655553 34566666666544322100 01123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
+..+...+...|++++|...|++..+... -+...+..+...|.+.|++++|+..++++.+.. |.+...+..+...+.
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 34455666677777777777777766531 134556666677777777777777777766543 444433333333333
Q ss_pred hcCcHHHHHHHHHHHHhcC--------------------------------------CCCCCHHHHHHHHHHHHhcCCHH
Q 003946 606 QNHEAGLMAKLLQEVKEGQ--------------------------------------RIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~--------------------------------------~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
..++.++|...++.+.... ...++...+..+...|.+.|+++
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 4444444444433221100 01123445677888888899999
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003946 648 DAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANE 726 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 726 (784)
+|++.|++..+. .| +...+..+...+...| ++++|...++.+.+. -+.+...+..+..++...|++++|.+
T Consensus 621 ~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g-~~~eA~~~l~~ll~~-----~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 621 AARAAYQRVLTR--EPGNADARLGLIEVDIAQG-DLAAARAQLAKLPAT-----ANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcc-----CCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 999999988875 45 5778888888888888 999999999877652 11245567778888888999999999
Q ss_pred HHHHHHhC
Q 003946 727 VVAMMEEG 734 (784)
Q Consensus 727 l~~~m~~~ 734 (784)
+++++...
T Consensus 693 ~~~~al~~ 700 (1157)
T PRK11447 693 TFNRLIPQ 700 (1157)
T ss_pred HHHHHhhh
Confidence 99988764
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=9.4e-19 Score=187.92 Aligned_cols=306 Identities=14% Similarity=0.124 Sum_probs=228.3
Q ss_pred HHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcC
Q 003946 261 AGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (784)
..+...|++++|+..|.++.+.+ +.+..++..+...+.+.|++++|..+++.+.............++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567799999999999999864 23446788888999999999999999998877532222111125888899999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHH
Q 003946 341 DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEA 420 (784)
Q Consensus 341 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (784)
++++|..+|+++.+.+
T Consensus 122 ~~~~A~~~~~~~l~~~---------------------------------------------------------------- 137 (389)
T PRK11788 122 LLDRAEELFLQLVDEG---------------------------------------------------------------- 137 (389)
T ss_pred CHHHHHHHHHHHHcCC----------------------------------------------------------------
Confidence 9999999999887621
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHH
Q 003946 421 EVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD---DAALGHVITL 497 (784)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~---~~~~~~li~~ 497 (784)
.++..+++.++..+.+.|++++|.+.+..+.+.+. ..+. ...+..+...
T Consensus 138 ---------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 138 ---------------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIAHFYCELAQQ 189 (389)
T ss_pred ---------------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHH
Confidence 33557888899999999999999999999887652 1111 1234566677
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 003946 498 CISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGA 577 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 577 (784)
+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.+..+|...|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 788899999999999988764 3346677788888899999999999999987653222245678888888888889988
Q ss_pred HHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 003946 578 LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK---KRLMQDAEKALK 654 (784)
Q Consensus 578 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~---~g~~~~A~~~~~ 654 (784)
...++++.+.. |+. ..+..+...+.+.|++++|..+++.+.+. .|+...++.++..+.. .|+.+++..+++
T Consensus 269 ~~~l~~~~~~~--p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 269 LEFLRRALEEY--PGA-DLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHhC--CCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 88888887754 433 34467777777778888888888777664 3677777777776664 457777888888
Q ss_pred HHHhCCCCCCHH
Q 003946 655 RMRSLGHLPNAQ 666 (784)
Q Consensus 655 ~m~~~g~~p~~~ 666 (784)
+|.+.+++|++.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 777776666655
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=2.9e-18 Score=184.17 Aligned_cols=277 Identities=13% Similarity=0.059 Sum_probs=233.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD---DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 526 (784)
+..+|..+...+...|++++|..+++.+...+. .++ ..++..+...|.+.|++++|..+|+++.+.. +++..++
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 144 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD--LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGAL 144 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHH
Confidence 456888999999999999999999999987541 222 2467888999999999999999999998763 3578899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 527 ASLLKAYIEANRPREVTALLRDARSAGIQLDA----SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
+.++..|.+.|++++|.+.++.+.+.+..++. ..|..+...+.+.|++++|...|+++.+.. |.....+..+..
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~ 222 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGD 222 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHH
Confidence 99999999999999999999999876533322 245667778889999999999999998764 666778888999
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCH
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKY 682 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~ 682 (784)
.+.+.|++++|.++|+.+.+..+ .....+++.++.+|.+.|++++|...++++.+. .|+...+..+...+.+.| ++
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g-~~ 298 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQE-GP 298 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhC-CH
Confidence 99999999999999999987542 112456889999999999999999999999885 577777788899999999 99
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHH
Q 003946 683 TEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVR---GGFFARANEVVAMMEEGKMFIDKY 741 (784)
Q Consensus 683 ~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~ 741 (784)
++|..+++++.+ ..|+...+..++..+.. .|+.+++..++++|.+++++|++.
T Consensus 299 ~~A~~~l~~~l~------~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 299 EAAQALLREQLR------RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHH------hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999999999876 36888899988888775 568999999999999988888776
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=8.7e-16 Score=176.55 Aligned_cols=200 Identities=12% Similarity=0.005 Sum_probs=131.8
Q ss_pred cccccccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHh
Q 003946 78 SMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEE 157 (784)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 157 (784)
.+...+...|.++.++..+.+.|...|++++|+..+++..+.. |+...|..++..+ +...+|...++++...
T Consensus 66 ~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i------~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 66 EFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI------PVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh------ccChhHHHHHHHHHHh
Confidence 3344456677788999999999999999999999999998865 6666666666444 3445677888888776
Q ss_pred cccccCccchHHHHHHH--------HhhCCCCccHHHHHHHHhhcCCCCChHHHHHH-HHHHhhcCCCchhhHHHHHHhh
Q 003946 158 GKQILLEKEPLIYLSLG--------LSKCGLPVPASTILRKLVATEQYPPVTAWSAI-LAHMSLTAPGAYLAAELILEIG 228 (784)
Q Consensus 158 ~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~~~~~~~~~a~ 228 (784)
.+. +++++..+... |.+. +.|.+.++ .......|+..+.... ...|.+. +++++|+
T Consensus 138 -~P~--n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l--------~dw~~Ai 202 (987)
T PRK09782 138 -QKA--CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYL--------KQWSQAD 202 (987)
T ss_pred -CCC--ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH--------hCHHHHH
Confidence 332 45555555554 5555 55555555 3333344455554544 6666665 7888888
Q ss_pred hhhccCCcCccccccccccCCCCchhh-HHHHHHHhhh-cCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHH
Q 003946 229 YLFQDGRVDPRKKCNAPLIAMKPNTNT-FNIALAGCLL-FETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREE 306 (784)
Q Consensus 229 ~~~~~~~m~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 306 (784)
+++. ++.+ ..|.... +..+-.+|.+ .++ +++..+++. .++-|......+.+.|.+.|+.++
T Consensus 203 ~lL~--~L~k----------~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 203 TLYN--EARQ----------QNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHH--HHHh----------cCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHH
Confidence 8888 7643 2333333 4445456666 355 777777553 233567778888888888888888
Q ss_pred HHHHHHHHHhh
Q 003946 307 LRKLQRHIDEA 317 (784)
Q Consensus 307 A~~l~~~~~~~ 317 (784)
|.++++++...
T Consensus 266 A~~~L~~~~~~ 276 (987)
T PRK09782 266 LQHYLIENKPL 276 (987)
T ss_pred HHHHHHhCccc
Confidence 88888776543
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=1.2e-14 Score=167.17 Aligned_cols=594 Identities=13% Similarity=0.057 Sum_probs=340.0
Q ss_pred HHHHHHHHH--hccchhhHHHHHHHhcccCCCCCc-hhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHH
Q 003946 93 LSAEIENAI--NEHRYGDAWKLYEQHMQMDGFPRK-TLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLI 169 (784)
Q Consensus 93 ~~~li~~~~--~~~~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 169 (784)
+..++.++. ..|++++|+..|++..+.. |+. ..+..+...+.+.|+ .++|...+++..+. .|+...|.
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~---~~~A~~~~~kAv~l----dP~n~~~~ 115 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGH---DDRARLLLEDQLKR----HPGDARLE 115 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc----CcccHHHH
Confidence 333444443 4599999999999999866 544 555677777777654 45677788887776 22212222
Q ss_pred HHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHH--------HhhcCCCchhhHHHHHHhhhhhccCCcCcccc
Q 003946 170 YLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAH--------MSLTAPGAYLAAELILEIGYLFQDGRVDPRKK 241 (784)
Q Consensus 170 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--------~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~ 241 (784)
.++ ...++.++|..+++++.+.... +..++..+... |.+. +...++++ . +.
T Consensus 116 ~~L---a~i~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~--------eqAl~AL~-l---r~----- 174 (987)
T PRK09782 116 RSL---AAIPVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL--------PVARAQLN-D---AT----- 174 (987)
T ss_pred HHH---HHhccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH--------HHHHHHHH-H---hh-----
Confidence 222 3339999999999999986432 23333333332 4443 66666666 3 33
Q ss_pred ccccccCCCCchhhHHHH-HHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcC
Q 003946 242 CNAPLIAMKPNTNTFNIA-LAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER-NGRREELRKLQRHIDEAVN 319 (784)
Q Consensus 242 ~~~~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~ 319 (784)
....|+..+.... ...|.+.+++++|+.++..+.+.+ ..+..-...|..+|.. .++ +.+..++....+
T Consensus 175 -----~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk--- 244 (987)
T PRK09782 175 -----FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF--- 244 (987)
T ss_pred -----hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---
Confidence 2234455545544 899999999999999999999986 3345556777778888 477 888888653222
Q ss_pred CChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH-----HHHHHHHhchhhhhhccCCCCCCCccccCCCCcccc
Q 003946 320 LSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKE-----ARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLE 394 (784)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (784)
.... ++..+.+.|.+.|+.++|.++++++.....- +|--.+.=+.......... ++..+ ..+..
T Consensus 245 -~d~~---l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~--~~~~~-----~~~~~ 313 (987)
T PRK09782 245 -TDPQ---SRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN--YTVQF-----ADNRQ 313 (987)
T ss_pred -cCHH---HHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc--hhhhh-----HHHHH
Confidence 2222 6999999999999999999999998764221 1100000000000000000 00000 00000
Q ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHh--hhHHHH-HHHHh---------hhc--CCcCC-CHHHHHHHHH
Q 003946 395 NSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLL--GMLQKQ-VELIT---------TEH--GILQP-TEKIYIKLVK 459 (784)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~---------~~~--~~~~p-~~~~~~~li~ 459 (784)
++... +..-..++... .-+..+..... .+.... ..... ... --..| +....--+-.
T Consensus 314 ~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~ 384 (987)
T PRK09782 314 YVVGA-----TLPVLLKEGQY----DAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTW 384 (987)
T ss_pred HHHHH-----HHHHHHhccHH----HHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 00000 00000000000 00000000000 000000 00000 000 00012 3333333444
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHH----------------------HHHH
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW---LDQAHDL----------------------LDEM 514 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~----------------------~~~m 514 (784)
...+.|+.++|.++|+..........++.....-++..|.+.+. ..++..+ ++..
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 56788999999999999876211124455556577777777655 2233222 1111
Q ss_pred HHc-CC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCC
Q 003946 515 HLA-GV-RA--SSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIP 590 (784)
Q Consensus 515 ~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 590 (784)
... +. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|+..|+++....
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~-- 539 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD-- 539 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--
Confidence 111 11 23 56677777777766 7777888877776654 4665544444555567888888888888765432
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003946 591 RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHS 670 (784)
Q Consensus 591 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 670 (784)
|. ...+..+...+.+.|+.++|...++......+ ++...+..+...+.+.|++++|...+++..+. .|+...|..
T Consensus 540 p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P--~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~ 614 (987)
T PRK09782 540 MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGL--GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVA 614 (987)
T ss_pred CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 22 33455666777888888888888888776532 12222333333444558888888888888763 577777777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 003946 671 MVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYK-YRTLFLK 749 (784)
Q Consensus 671 ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~-~~~li~~ 749 (784)
+..++.+.| ++++|...+++..+.. +.+...++.+..++...|++++|.+.+++..+. .|+... +..+-..
T Consensus 615 LA~~l~~lG-~~deA~~~l~~AL~l~-----Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~a 686 (987)
T PRK09782 615 RATIYRQRH-NVPAAVSDLRAALELE-----PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYV 686 (987)
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 778888888 8888888888877621 224567777788888888888888888888764 455433 3333344
Q ss_pred HhcccccCCchhhHH
Q 003946 750 YHKTLYKGKTPKFQT 764 (784)
Q Consensus 750 ~~~~~~~~~a~~~~~ 764 (784)
+...++.+.|...+.
T Consensus 687 l~~lGd~~eA~~~l~ 701 (987)
T PRK09782 687 NQRLDDMAATQHYAR 701 (987)
T ss_pred HHHCCCHHHHHHHHH
Confidence 444444444444443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=3.5e-17 Score=166.09 Aligned_cols=445 Identities=13% Similarity=0.024 Sum_probs=337.1
Q ss_pred HHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHH
Q 003946 94 SAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSL 173 (784)
Q Consensus 94 ~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 173 (784)
..+..-..+.|++++|++.-...-+.+ |...--..++.+.--.+ .+.+....-.....+ ....-.+.|..+.+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~--~r~d~s~a~~~~a~r---~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQG--SRLDKSSAGSLLAIR---KNPQGAEAYSNLAN 124 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcc--cchhhhhhhhhhhhh---ccchHHHHHHHHHH
Confidence 344555667899999999888665544 22222222333322211 111122111111111 12334667888999
Q ss_pred HHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCch
Q 003946 174 GLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNT 253 (784)
Q Consensus 174 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~ 253 (784)
.+-..|++++|+.+++.+++...+ .+..|..+-.++... |+.+.|...|. +- -.+.|+.
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~--------~~~~~a~~~~~--~a----------lqlnP~l 183 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQ--------GDLELAVQCFF--EA----------LQLNPDL 183 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhc--------CCCcccHHHHH--HH----------HhcCcch
Confidence 999999999999999999986322 456777777777765 66677777766 33 2357777
Q ss_pred hhHHHHHHHhhh-cCChhHHHHHHHhhhhCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 254 NTFNIALAGCLL-FETTRKAEQLLDIMPRIGVKADS-NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 254 ~~~~~ll~~~~~-~g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
+...+-+..+.+ .|+.++|...|-+.++. .|.- ..|+.|...+-..|++..|..-|++..+.++...+ .|-.
T Consensus 184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d----AYiN 257 (966)
T KOG4626|consen 184 YCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD----AYIN 257 (966)
T ss_pred hhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH----HHhh
Confidence 766665555554 68999999998887764 4554 67888888899999999999999998887655555 4899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhh
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTK 411 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (784)
|-..|...+.+++|...+.+...
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~--------------------------------------------------------- 280 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALN--------------------------------------------------------- 280 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHh---------------------------------------------------------
Confidence 99999999999999998887665
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHH
Q 003946 412 DRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAA 490 (784)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~ 490 (784)
..| ..+.+..|...|-..|.++.|+..+++..... +--...
T Consensus 281 -----------------------------------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~---P~F~~A 322 (966)
T KOG4626|consen 281 -----------------------------------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ---PNFPDA 322 (966)
T ss_pred -----------------------------------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC---CCchHH
Confidence 344 34677778888889999999999999998775 333456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLD-ASCYEALLQSKI 569 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~ 569 (784)
|+.|..++-..|++.+|...|++...... --....+.|...|...|.+++|..+|....+- .|. ....+.|...|-
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYK 399 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHH
Confidence 99999999999999999999999988642 24678889999999999999999999998764 454 356899999999
Q ss_pred HcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 003946 570 VQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQD 648 (784)
Q Consensus 570 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~ 648 (784)
+.|++++|+..+++..+ +.|.-..+|+.+...|-..|+++.|.+.+.....-+ |. ...++.|...|-..|++.+
T Consensus 400 qqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n---Pt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN---PTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred hcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC---cHHHHHHhhHHHHhhccCCcHH
Confidence 99999999999999876 558888899999999999999999999999988744 44 4578999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHH
Q 003946 649 AEKALKRMRSLGHLPN-AQTFHSMVTGYAA 677 (784)
Q Consensus 649 A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~ 677 (784)
|+.-+++.++ ++|| ...|..++.+..-
T Consensus 475 AI~sY~~aLk--lkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHHHHHHc--cCCCCchhhhHHHHHHHH
Confidence 9999999987 6787 4566666655443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=1.2e-16 Score=162.36 Aligned_cols=441 Identities=15% Similarity=0.075 Sum_probs=320.2
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccccc
Q 003946 168 LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLI 247 (784)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~ 247 (784)
.-.+-..|....+.+....--....+. ...-..+|..+-..+-.+ |++++|+.+++ .+.
T Consensus 85 llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker--------g~~~~al~~y~--~ai---------- 143 (966)
T KOG4626|consen 85 LLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER--------GQLQDALALYR--AAI---------- 143 (966)
T ss_pred eeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh--------chHHHHHHHHH--HHH----------
Confidence 333444566666666655433333322 122455777777777665 88888988888 663
Q ss_pred CCCCc-hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhH
Q 003946 248 AMKPN-TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLL-IIMAHIYERNGRREELRKLQRHIDEAVNLSDIQF 325 (784)
Q Consensus 248 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~-~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~ 325 (784)
...|+ +-.|..+-.++...|+.+.|.+.|.+.++ +.|+..-. +.+....-..|++++|...+-+..+..+-...
T Consensus 144 el~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi-- 219 (966)
T KOG4626|consen 144 ELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI-- 219 (966)
T ss_pred hcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceee--
Confidence 24554 55788888888888999999998888876 35766443 34445555678888988888887775433222
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccc
Q 003946 326 RQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILS 405 (784)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (784)
.|+.|-..+-..|+...|+.-|++...
T Consensus 220 --awsnLg~~f~~~Gei~~aiq~y~eAvk--------------------------------------------------- 246 (966)
T KOG4626|consen 220 --AWSNLGCVFNAQGEIWLAIQHYEEAVK--------------------------------------------------- 246 (966)
T ss_pred --eehhcchHHhhcchHHHHHHHHHHhhc---------------------------------------------------
Confidence 588888888889999999888887665
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 406 YEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPT-EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQV 484 (784)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 484 (784)
+.|+ ...|-.|-..|-..+.+++|...+.+.....
T Consensus 247 -----------------------------------------ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--- 282 (966)
T KOG4626|consen 247 -----------------------------------------LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--- 282 (966)
T ss_pred -----------------------------------------CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC---
Confidence 3443 2567778888899999999999998887664
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS-SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 563 (784)
+...+.+..+...|-..|.++.|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.+++..... .--..+.+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 455667777888888899999999999988875 355 5789999999999999999999999887653 224567888
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHh
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCK 642 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~ 642 (784)
|-..|...|.+++|..+|....+-. |.-...++.|...|-+.|++++|...+++... +.|+ ...|+.|...|-.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHH
Confidence 9999999999999999998877643 66677889999999999999999999998887 5565 4578999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcC-
Q 003946 643 KRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRGG- 719 (784)
Q Consensus 643 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~g- 719 (784)
.|+++.|.+.+.+.+. +.|. ...++.|...|...| ++.+|+.-++...+ ++|| +..|..++..+---.
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsG-ni~~AI~sY~~aLk------lkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSG-NIPEAIQSYRTALK------LKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccC-CcHHHHHHHHHHHc------cCCCCchhhhHHHHHHHHHhc
Confidence 9999999999988887 4565 567788888888888 99999999988876 4554 334444444333222
Q ss_pred ------ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 720 ------FFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 720 ------~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
++++..++.++-.++..-|...-..+++
T Consensus 506 w~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ 539 (966)
T KOG4626|consen 506 WTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSML 539 (966)
T ss_pred ccchHHHHHHHHHHHHHHHhhhcCCccCcccccc
Confidence 2344555555444444445544444444
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.2e-15 Score=171.97 Aligned_cols=382 Identities=9% Similarity=-0.022 Sum_probs=291.2
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 255 TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 255 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
-.-.++..+.+.|+++.|..+++......-. +...+..++.++...|+++.|...++.+.+..+.+.. .|..+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~----a~~~la~ 118 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE----DVLLVAS 118 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH----HHHHHHH
Confidence 3445677888999999999999999876422 3345555666777899999999999999987655544 5899999
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhh
Q 003946 335 CHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRK 414 (784)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (784)
.+.+.|++++|...|++..+.
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l----------------------------------------------------------- 139 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLA----------------------------------------------------------- 139 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-----------------------------------------------------------
Confidence 999999999999999988872
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 003946 415 FVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH 493 (784)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 493 (784)
.| +...+..+...+...|++++|...++.+.... +.+...+..
T Consensus 140 ---------------------------------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~ 183 (656)
T PRK15174 140 ---------------------------------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIAT 183 (656)
T ss_pred ---------------------------------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHH
Confidence 34 56788889999999999999999999887665 333333433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 494 VITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD 573 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 573 (784)
+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|...+++..+.. ..+...+..+...+...|+
T Consensus 184 ~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 184 C-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred H-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 3 3478899999999999998877544455566667788999999999999999998764 3367788889999999999
Q ss_pred hhH----HHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003946 574 TPG----ALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDA 649 (784)
Q Consensus 574 ~~~----A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 649 (784)
.++ |+..|++..+.. |++...+..+...+.+.|++++|...++......+. +...+..+..+|.+.|++++|
T Consensus 262 ~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~--~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD--LPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred chhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHH
Confidence 986 899999988764 888899999999999999999999999999986532 345677889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003946 650 EKALKRMRSLGHLPNAQT-FHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVV 728 (784)
Q Consensus 650 ~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 728 (784)
.+.++++... .|+... +..+..++...| +.++|...+++..+..++....+-......+-.++...+..++...+.
T Consensus 338 ~~~l~~al~~--~P~~~~~~~~~a~al~~~G-~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~ 414 (656)
T PRK15174 338 SDEFVQLARE--KGVTSKWNRYAAAALLQAG-KTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWA 414 (656)
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHH
Confidence 9999999875 566444 334566788889 999999999998774322211111223334444444555555544555
Q ss_pred HHHHhCCCCCCHHHHHH
Q 003946 729 AMMEEGKMFIDKYKYRT 745 (784)
Q Consensus 729 ~~m~~~g~~pd~~~~~~ 745 (784)
.+..-..-..|..+|+.
T Consensus 415 ~~~~~~~~~~~~~~~~~ 431 (656)
T PRK15174 415 WEVAGRQSGIERDEWER 431 (656)
T ss_pred HHHhcccccCChHHHHH
Confidence 55553322344455543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=2.4e-14 Score=162.11 Aligned_cols=414 Identities=11% Similarity=-0.022 Sum_probs=292.4
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 255 TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 255 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
.+...-..+.+.|++++|+..|++.++ +.|+...|..+..+|.+.|++++|.+.+....+.++.... .|..+-.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~----a~~~~a~ 202 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK----ALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHH----HHHHHHH
Confidence 355666778889999999999999887 4688889999999999999999999999999886554444 5889999
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhh
Q 003946 335 CHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRK 414 (784)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (784)
+|...|++++|+..|......+.........+... ...
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~l~--- 240 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVER---------------------------------------LLK--- 240 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHH---------------------------------------HHH---
Confidence 99999999999998876544221000000000000 000
Q ss_pred hHHHHHHHHH-------------HHHHHhhhHHHHH--HHHhhhcCCcCCCH-HHHHHHHHH---HHHcCChHHHHHHHH
Q 003946 415 FVALEAEVKR-------------VLQTLLGMLQKQV--ELITTEHGILQPTE-KIYIKLVKA---FLEAGKTKELTHFLI 475 (784)
Q Consensus 415 ~~~~~~~~~~-------------~~~~~~~~~~~~~--~~~~~~~~~~~p~~-~~~~~li~~---~~~~g~~~~a~~~~~ 475 (784)
......... .+........... ..... .....|+. ..+..+... ....+++++|.+.|+
T Consensus 241 -~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~ 318 (615)
T TIGR00990 241 -KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED-SNELDEETGNGQLQLGLKSPESKADESYEEAARAFE 318 (615)
T ss_pred -HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc-ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 000000000 0000000000000 00000 00001100 011111111 123468899999999
Q ss_pred HHHHcCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 003946 476 KAEKENLQVSH-DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGI 554 (784)
Q Consensus 476 ~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 554 (784)
+....+. ..| +...+..+...+...|++++|...|+...+.. +-+...|..+...+...|++++|...|++..+..
T Consensus 319 ~al~~~~-~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 395 (615)
T TIGR00990 319 KALDLGK-LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN- 395 (615)
T ss_pred HHHhcCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 9887642 233 44567778888889999999999999998864 2246688889999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHH
Q 003946 555 QLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWN 634 (784)
Q Consensus 555 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~ 634 (784)
..+...|..+...+...|++++|+..|++..+.. |++...+..+...+.+.|++++|...|+......+. +...|+
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~ 471 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE--APDVYN 471 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHH
Confidence 3367889999999999999999999999998865 777888889999999999999999999999876532 456789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CH
Q 003946 635 NVIHFFCKKRLMQDAEKALKRMRSLGHLPNA-Q-------TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DE 705 (784)
Q Consensus 635 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-------~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~ 705 (784)
.+...|...|++++|++.|++..+. .|+. . .++..+..+...| ++++|..++++.... .| +.
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~-~~~eA~~~~~kAl~l------~p~~~ 542 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQ-DFIEAENLCEKALII------DPECD 542 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhc------CCCcH
Confidence 9999999999999999999998875 3321 1 1122222333458 999999999998762 23 44
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 706 ELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 706 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
..+..+...+...|++++|.+.|++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 57889999999999999999999998764
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=1.2e-14 Score=163.79 Aligned_cols=332 Identities=10% Similarity=-0.012 Sum_probs=270.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchh
Q 003946 290 LLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLP 369 (784)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 369 (784)
-...++..+.+.|+.++|..+++......+.... .+..+..+....|++++|...|+++...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~~------------- 106 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD----LLRRWVISPLASSQPDAVLQVVNKLLAVN------------- 106 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh----HHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------------
Confidence 3445667788999999999999999887555444 36666677788999999999999998732
Q ss_pred hhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC
Q 003946 370 FNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP 449 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 449 (784)
+.
T Consensus 107 ------------------------------------------------------------------------------P~ 108 (656)
T PRK15174 107 ------------------------------------------------------------------------------VC 108 (656)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 22
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~---P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~ 184 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLAF---SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC 184 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 45678888899999999999999999998865 556677888999999999999999999988776433 33344333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..+...|++++|...++.+.+....++...+..+..++...|+.++|+..+++..+.. |.+...+..+...+...|+
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCC
Confidence 3478899999999999998776433455566666788899999999999999998865 7778899999999999999
Q ss_pred HHH----HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHH
Q 003946 610 AGL----MAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTE 684 (784)
Q Consensus 610 ~~~----a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~ 684 (784)
+++ |...|+...+..+ .+...+..+...+.+.|++++|+..+++..+. .|+ ...+..+..++...| ++++
T Consensus 262 ~~eA~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G-~~~e 336 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFNS--DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVG-QYTA 336 (656)
T ss_pred chhhHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC-CHHH
Confidence 986 8999999988653 25678999999999999999999999999985 564 566777888999999 9999
Q ss_pred HHHHHHHHHhcccCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 685 VTELWGEMKSFASSTSMNFDE-ELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 685 a~~~~~~m~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
|...++.+.+. .|+. ..+..+..++...|++++|.+.+++..+.
T Consensus 337 A~~~l~~al~~------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 337 ASDEFVQLARE------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHh------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998862 3443 33444677899999999999999998865
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=2.9e-14 Score=161.44 Aligned_cols=431 Identities=13% Similarity=0.013 Sum_probs=287.2
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHH
Q 003946 92 KLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYL 171 (784)
Q Consensus 92 ~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 171 (784)
.+......|...|++++|+..|++.++.. |+...|..+-.++.+.| +.++|+..+...++. .+ ..+..+..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~---~~~~Ai~~~~~al~l-~p--~~~~a~~~~ 200 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALG---DWEKVVEDTTAALEL-DP--DYSKALNRR 200 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhC---CHHHHHHHHHHHHHc-CC--CCHHHHHHH
Confidence 35566778889999999999999988754 77777777777777654 556688888887765 21 245567778
Q ss_pred HHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCC
Q 003946 172 SLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKP 251 (784)
Q Consensus 172 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p 251 (784)
..+|...|++++|...|......+...+... ..++..+... ....++...++ .- ++
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~--------~a~~~~~~~l~--~~-------------~~ 256 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKK--------FAESKAKEILE--TK-------------PE 256 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHH--------HHHHHHHHHHh--cC-------------CC
Confidence 8899999999999998877655422212211 1111111110 11222333333 11 22
Q ss_pred chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCCh-hHHHHHHHH---HHhcCCHHHHHHHHHHHHhhc--CCChhhH
Q 003946 252 NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADS-NLLIIMAHI---YERNGRREELRKLQRHIDEAV--NLSDIQF 325 (784)
Q Consensus 252 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~---~~~~g~~~~A~~l~~~~~~~~--~~~~~~~ 325 (784)
+..++..+ ..+........+..-+..-.+ ..++. ..+..+... ....+++++|.+.|+.....+ .+....
T Consensus 257 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~- 332 (615)
T TIGR00990 257 NLPSVTFV-GNYLQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAI- 332 (615)
T ss_pred CCCCHHHH-HHHHHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHH-
Confidence 22222222 222222222222222222111 11211 111111111 123467889999998887653 232222
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccc
Q 003946 326 RQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILS 405 (784)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (784)
.|+.+...+...|++++|+..|++..+
T Consensus 333 --a~~~lg~~~~~~g~~~eA~~~~~kal~--------------------------------------------------- 359 (615)
T TIGR00990 333 --ALNLRGTFKCLKGKHLEALADLSKSIE--------------------------------------------------- 359 (615)
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------------------------------
Confidence 588888888899999999999988776
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 406 YEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQV 484 (784)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 484 (784)
..| +...|..+...+...|++++|...|++..+..
T Consensus 360 -----------------------------------------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--- 395 (615)
T TIGR00990 360 -----------------------------------------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--- 395 (615)
T ss_pred -----------------------------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 234 34577788888889999999999999988765
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL 564 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 564 (784)
+.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+.. ..+...|+.+
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~l 473 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYY 473 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 5567778888888999999999999999988764 3357778888888999999999999999887653 2356788888
Q ss_pred HHHHHHcCChhHHHHHHHHhHhcCCCCCc-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 003946 565 LQSKIVQKDTPGALHLFKEMKESKIPRSG-----HQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHF 639 (784)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~ 639 (784)
...+...|++++|+..|++.....-.... ...++..+..+...|++++|.++++.....++ .+...+..+...
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p--~~~~a~~~la~~ 551 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP--ECDIAVATMAQL 551 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHH
Confidence 88999999999999999988765421110 11223333344456899999999998877542 234578899999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 003946 640 FCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 640 ~~~~g~~~~A~~~~~~m~~~ 659 (784)
|...|++++|++.|++..+.
T Consensus 552 ~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 552 LLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 99999999999999998875
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.3e-13 Score=148.12 Aligned_cols=321 Identities=13% Similarity=0.110 Sum_probs=230.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENL-QVSHDDA-------ALGHVITLCISLGWLDQAHDLLDEMHLAGV 519 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 519 (784)
.+.+...|.+...+...|++.+|...|......-. ...+|.. -|| +-...-..++.+.|.+.|..+.+..
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkeh- 526 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEH- 526 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHC-
Confidence 46778899999999999999999999999875510 0133331 233 4444556789999999999999863
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHH
Q 003946 520 RAS-SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFE 598 (784)
Q Consensus 520 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 598 (784)
|+ +..|--+..+.-..+...+|...++...... ..+...++.+-..+.....+..|.+-|....+.-...++..+..
T Consensus 527 -p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 527 -PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred -chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 43 3344444444444578889999999987653 34556666666678888888889887777766554455666666
Q ss_pred HHHHHHHhc------------CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003946 599 MLVKGCAQN------------HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666 (784)
Q Consensus 599 ~ll~~~~~~------------~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 666 (784)
.|.+.|... +..+.|.++|..+...++ .|...-|-+.-.++..|++.+|..+|.+..+... -+..
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp--kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~d 681 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP--KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFED 681 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc--chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCc
Confidence 666655432 247888999998887654 3777778899999999999999999999998742 3456
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003946 667 TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTL 746 (784)
Q Consensus 667 ~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 746 (784)
+|-.+...|...| +|-.|++.|+...+. ..-.-+..+...|..++.++|++.+|.+.+.........-..+-||..
T Consensus 682 v~lNlah~~~e~~-qy~~AIqmYe~~lkk---f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQG-QYRLAIQMYENCLKK---FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred eeeeHHHHHHHHH-HHHHHHHHHHHHHHH---hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 7888899999999 999999999987662 344557889999999999999999999999888876444445566655
Q ss_pred H--HHHhcccccC--CchhhHHHHHHHHHHHHHhhHh
Q 003946 747 F--LKYHKTLYKG--KTPKFQTEAQLKKREAALGFKK 779 (784)
Q Consensus 747 i--~~~~~~~~~~--~a~~~~~~~~~~~~e~~~~~~~ 779 (784)
+ ........+. .-.+.+.++.....+....|..
T Consensus 758 ~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ 794 (1018)
T KOG2002|consen 758 LVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTE 794 (1018)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5 2222222222 4455555555555555555543
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=2.7e-13 Score=156.39 Aligned_cols=410 Identities=10% Similarity=0.003 Sum_probs=257.3
Q ss_pred HHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 003946 257 NIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCH 336 (784)
Q Consensus 257 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (784)
.-.+......|+.++|++++....... +.+...+..+..++.+.|++++|.++++...+..+.+.. .+..+...+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~l 93 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD----YQRGLILTL 93 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHH
Confidence 344555667899999999998887622 344456888888899999999999999998876555544 477888888
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhH
Q 003946 337 LKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFV 416 (784)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (784)
.+.|++++|+..+++..+... .... ....+... ...
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P---------------------------------------~~~~--~~~la~~l---~~~ 129 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAP---------------------------------------DKAN--LLALAYVY---KRA 129 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCC---------------------------------------CCHH--HHHHHHHH---HHC
Confidence 999999999999988877431 0000 00000000 000
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH------H
Q 003946 417 ALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD------A 489 (784)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~------~ 489 (784)
+...++...+..+.. ..| +...+..+..++...+..++|++.++.... .|+. .
T Consensus 130 g~~~~Al~~l~~al~---------------~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-----~p~~~~~l~~~ 189 (765)
T PRK10049 130 GRHWDELRAMTQALP---------------RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-----TPAEKRDLEAD 189 (765)
T ss_pred CCHHHHHHHHHHHHH---------------hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-----CHHHHHHHHHH
Confidence 001112222221111 234 445556666677777777777777765442 1221 0
Q ss_pred HHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003946 490 ALGHVITLCI-----SLGWL---DQAHDLLDEMHLA-GVRASSS-VY----ASLLKAYIEANRPREVTALLRDARSAGIQ 555 (784)
Q Consensus 490 ~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 555 (784)
....++.... ..+++ ++|...++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+..
T Consensus 190 ~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~ 269 (765)
T PRK10049 190 AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI 269 (765)
T ss_pred HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Confidence 1111222221 11223 6677777777754 1222221 11 11133455678888888888888776522
Q ss_pred -CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC------
Q 003946 556 -LDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR--SGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI------ 626 (784)
Q Consensus 556 -p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------ 626 (784)
|+. .-..+..+|...|++++|+..|+++....-.. ........+..++...|++++|.++++.+....+.
T Consensus 270 ~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~ 348 (765)
T PRK10049 270 IPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYG 348 (765)
T ss_pred CCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecC
Confidence 332 12224667888888888888888877543111 11345566666788888888888888888775421
Q ss_pred ----CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 003946 627 ----DCG---VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS 698 (784)
Q Consensus 627 ----~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~ 698 (784)
.|+ ...+..+...+...|++++|+++++++... .| +...+..+...+...| ++++|+..+++...
T Consensus 349 ~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g-~~~~A~~~l~~al~---- 421 (765)
T PRK10049 349 SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARG-WPRAAENELKKAEV---- 421 (765)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh----
Confidence 122 234556777888888888888888888775 34 5667777777888888 88888888888876
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 699 TSMNFD-EELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 699 ~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
+.|+ ...+..+...+.+.|++++|.++++++.+. .|+......|=
T Consensus 422 --l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 422 --LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred --hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 2343 566677777888888888888888888874 66666555443
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=5.5e-14 Score=137.18 Aligned_cols=293 Identities=12% Similarity=0.199 Sum_probs=231.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
+.+..+|.+||.++|+--..+.|.+++.+-.... .+.+..+||.+|.+-+- ....+++.+|....++||..|+|
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k--~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK--GKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh--heeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHH
Confidence 4466899999999999999999999999998766 58999999999987653 33388999999999999999999
Q ss_pred HHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH-HHHHHHHhHhc-------CCCCCcHH
Q 003946 528 SLLKAYIEANRPRE----VTALLRDARSAGIQLDASCYEALLQSKIVQKDTPG-ALHLFKEMKES-------KIPRSGHQ 595 (784)
Q Consensus 528 ~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~~~~~m~~~-------~~~~~~~~ 595 (784)
+++++.++.|+++. |.+++.+|++.|+.|...+|..+|.-+++.++..+ |.....++... .+.|.+..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998765 46778899999999999999999999999888755 44555554432 23467777
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQR---IDCG---VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
.|...+..|.+..+.+.|.++..-+..+.. +.|+ ..-|..+..+.|.....+.-+..++.|.-.-+-|+..+-.
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 899999999999999999999887775543 2233 2346778888899999999999999998887888999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcc---------------cCCCCCC-------------------------------
Q 003946 670 SMVTGYAAIGGKYTEVTELWGEMKSFA---------------SSTSMNF------------------------------- 703 (784)
Q Consensus 670 ~ll~a~~~~g~~~~~a~~~~~~m~~~~---------------~~~~~~p------------------------------- 703 (784)
.+++|....+ .++-..++|..++..+ ......|
T Consensus 438 ~~lrA~~v~~-~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 438 HLLRALDVAN-RLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHhhcC-cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999988 9988888887776632 0111122
Q ss_pred ----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 003946 704 ----DEELLDSVLYTFVRGGFFARANEVVAMMEEGK-MFIDKYKYRTLF 747 (784)
Q Consensus 704 ----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~li 747 (784)
.....+.+.-.+.|.|+.++|.+++.-....| --|-....+.|+
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 23344567778889999999999999985443 335555555444
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=1.6e-12 Score=146.82 Aligned_cols=462 Identities=11% Similarity=-0.009 Sum_probs=287.2
Q ss_pred ChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCc--hhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccc
Q 003946 89 DPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRK--TLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKE 166 (784)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 166 (784)
.+.+-..-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...| ...+|...+++.... .+..
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G---~~~~A~~~~eka~~p-----~n~~ 101 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAG---RDQEVIDVYERYQSS-----MNIS 101 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcC---CcHHHHHHHHHhccC-----CCCC
Confidence 34443334445778999999999999988855 543 233 6666666544 445577777776521 1222
Q ss_pred hHHHH--HHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccc
Q 003946 167 PLIYL--SLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNA 244 (784)
Q Consensus 167 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~ 244 (784)
.+..+ ...|...|++++|.++++++.+.... +...+..++..|... ++.++|++.++ ++.
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~--------~q~~eAl~~l~--~l~------- 163 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADA--------GRGGVVLKQAT--ELA------- 163 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhc--------CCHHHHHHHHH--Hhc-------
Confidence 23333 55788889999999999999876433 344444554555543 67777777777 652
Q ss_pred cccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhh
Q 003946 245 PLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQ 324 (784)
Q Consensus 245 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 324 (784)
...|+...+-.++..+...++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++..+-+....+.+..
T Consensus 164 ---~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~ 239 (822)
T PRK14574 164 ---ERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYR 239 (822)
T ss_pred ---ccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHH
Confidence 245555555333333333455555888888887753 2244556667777777787777776665543321111110
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccccc
Q 003946 325 FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHIL 404 (784)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (784)
..-...+.-.++.+.... ..+.
T Consensus 240 --~l~~~~~a~~vr~a~~~~-----~~~~--------------------------------------------------- 261 (822)
T PRK14574 240 --QLERDAAAEQVRMAVLPT-----RSET--------------------------------------------------- 261 (822)
T ss_pred --HHHHHHHHHHHhhccccc-----ccch---------------------------------------------------
Confidence 000000000111110000 0000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 405 SYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPT-----EKIYIKLVKAFLEAGKTKELTHFLIKAEK 479 (784)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 479 (784)
..-...+.++..+...... .+ ..|. ....--.+.++...|+..++++.|+.+..
T Consensus 262 ------------~r~~~~d~ala~~~~l~~~--------~~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 262 ------------ERFDIADKALADYQNLLTR--------WG-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred ------------hhHHHHHHHHHHHHHHHhh--------cc-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 0000111111111111000 00 1121 12333566788899999999999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 003946 480 ENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG-----VRASSSVYASLLKAYIEANRPREVTALLRDARSAGI 554 (784)
Q Consensus 480 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 554 (784)
.+. +.-..+-..+.++|...+++++|..+|..+.... ..++......|..+|...+++++|..+++.+.+.-.
T Consensus 321 ~~~--~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 321 EGY--KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred cCC--CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 883 3334457889999999999999999999997643 233455567899999999999999999999987311
Q ss_pred -------------CCCHHH-HHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003946 555 -------------QLDASC-YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEV 620 (784)
Q Consensus 555 -------------~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 620 (784)
.||-.. +..++..+...|++.+|++.++++.... |.+......+...+...|.+.+|++.++..
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 122222 3445666778899999999999987765 888888888888888889999999888777
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003946 621 KEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHS 670 (784)
Q Consensus 621 ~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 670 (784)
....+ -+..+.-.....+...|++++|..+.+...+. .|+....-.
T Consensus 477 ~~l~P--~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 477 ESLAP--RSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred hhhCC--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHH
Confidence 66432 24556667777788888899998888888774 565543333
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=3.3e-13 Score=155.58 Aligned_cols=416 Identities=10% Similarity=0.035 Sum_probs=275.3
Q ss_pred cCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccc
Q 003946 162 LLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKK 241 (784)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~ 241 (784)
..++....-.+......|+.++|++++.+..... ..+...+..+-..+... |++++|..+++ +..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~--------g~~~~A~~~~~--~al---- 76 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNL--------KQWQNSLTLWQ--KAL---- 76 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc--------CCHHHHHHHHH--HHH----
Confidence 3455566667777888999999999999887522 22344567776666665 78889999888 642
Q ss_pred ccccccCCCC-chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 003946 242 CNAPLIAMKP-NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNL 320 (784)
Q Consensus 242 ~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 320 (784)
...| +...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+..+.
T Consensus 77 ------~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 77 ------SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred ------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 2334 45566777788899999999999999998763 33445 888888999999999999999999997555
Q ss_pred ChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccc
Q 003946 321 SDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIE 400 (784)
Q Consensus 321 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (784)
+.. ++..+...+.+.|..++|++.++......- +
T Consensus 149 ~~~----~~~~la~~l~~~~~~e~Al~~l~~~~~~p~--~---------------------------------------- 182 (765)
T PRK10049 149 TQQ----YPTEYVQALRNNRLSAPALGAIDDANLTPA--E---------------------------------------- 182 (765)
T ss_pred CHH----HHHHHHHHHHHCCChHHHHHHHHhCCCCHH--H----------------------------------------
Confidence 544 477788889999999999998875554100 0
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCH-HHHHHHHHHHHHcCCh---HHHHHHHHH
Q 003946 401 NHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTE-KIYIKLVKAFLEAGKT---KELTHFLIK 476 (784)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~---~~a~~~~~~ 476 (784)
.... .. .|.. .....+.......+++ ++|++.++.
T Consensus 183 ------------~~~l----~~-------------------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 183 ------------KRDL----EA-------------------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred ------------HHHH----HH-------------------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 0000 00 0000 0000011111222233 667777777
Q ss_pred HHHcCCCCCCCHH-HHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 477 AEKENLQVSHDDA-ALG----HVITLCISLGWLDQAHDLLDEMHLAGVR-ASSSVYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 477 m~~~~~~~~p~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
+.+... ..|+.. .+. ..+.++...|++++|...|+.+.+.+.+ |+. .-..+...|...|++++|+..|+++.
T Consensus 222 ll~~~~-~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 222 LEALWH-DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHhhcc-cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 765411 122221 111 1133445667888888888888776532 322 11224667888888888888888876
Q ss_pred HcCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC-----------CCCc--HHHHHHHHHHHHhcCcHHHHH
Q 003946 551 SAGIQL---DASCYEALLQSKIVQKDTPGALHLFKEMKESKI-----------PRSG--HQEFEMLVKGCAQNHEAGLMA 614 (784)
Q Consensus 551 ~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~~--~~~~~~ll~~~~~~~~~~~a~ 614 (784)
+..... ....+..+..++.+.|++++|...++++....- .|.+ ...+..+...+...|++++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 542111 123455666677788888888888888776430 0121 224556677788888888888
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003946 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMK 693 (784)
Q Consensus 615 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~ 693 (784)
+.++++....+- +...+..+...+...|++++|++.+++.... .|+ ...+......+...| ++++|..+++++.
T Consensus 380 ~~l~~al~~~P~--n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~-~~~~A~~~~~~ll 454 (765)
T PRK10049 380 MRARELAYNAPG--NQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQ-EWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 888888776542 4567888888888889999999999888874 575 455556666777778 8999999998887
Q ss_pred h
Q 003946 694 S 694 (784)
Q Consensus 694 ~ 694 (784)
+
T Consensus 455 ~ 455 (765)
T PRK10049 455 A 455 (765)
T ss_pred H
Confidence 7
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=1.2e-12 Score=147.88 Aligned_cols=435 Identities=10% Similarity=0.027 Sum_probs=298.7
Q ss_pred HHHHHhhhhhccCCcCccccccccccCCCCchh-hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh
Q 003946 222 ELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTN-TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER 300 (784)
Q Consensus 222 ~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 300 (784)
|+++.|+..|+ +.. ...|+.. ....++..+...|+.++|+..++..... -.........+...|..
T Consensus 48 Gd~~~Al~~L~--qaL----------~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 48 GDTAPVLDYLQ--EES----------KAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRN 114 (822)
T ss_pred CCHHHHHHHHH--HHH----------hhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Confidence 88889999998 663 2456642 2238888888999999999999998721 11222334444668889
Q ss_pred cCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCC
Q 003946 301 NGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTP 380 (784)
Q Consensus 301 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (784)
.|++++|.++|+++.+..+.+.. ++..++..|.+.++.++|++.+++....+..
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~----~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~---------------------- 168 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPD----LISGMIMTQADAGRGGVVLKQATELAERDPT---------------------- 168 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHhhcCCHHHHHHHHHHhcccCcc----------------------
Confidence 99999999999999998666644 5778899999999999999999998875420
Q ss_pred CCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHH
Q 003946 381 SEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVK 459 (784)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~ 459 (784)
..+...+ ..+ ........++...++.+.. ..| +...+..++.
T Consensus 169 -----------------~~~~l~l---ayL--~~~~~~~~~AL~~~ekll~---------------~~P~n~e~~~~~~~ 211 (822)
T PRK14574 169 -----------------VQNYMTL---SYL--NRATDRNYDALQASSEAVR---------------LAPTSEEVLKNHLE 211 (822)
T ss_pred -----------------hHHHHHH---HHH--HHhcchHHHHHHHHHHHHH---------------hCCCCHHHHHHHHH
Confidence 0000000 000 0000001112222222211 245 6777888889
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHH------HHHHHHH-----HHcCC---HHHHHHHHHHHHHc-CCCCC--
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAAL------GHVITLC-----ISLGW---LDQAHDLLDEMHLA-GVRAS-- 522 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~------~~li~~~-----~~~g~---~~~a~~~~~~m~~~-g~~~~-- 522 (784)
++.+.|-...|.++..+-..- +.+...-+ ...++.- ....+ .+.|..-++.+... +-.|.
T Consensus 212 ~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~ 288 (822)
T PRK14574 212 ILQRNRIVEPALRLAKENPNL---VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQ 288 (822)
T ss_pred HHHHcCCcHHHHHHHHhCccc---cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccc
Confidence 999999999888776653311 12222111 1111110 01112 34455555555542 11132
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC----CCCcHH
Q 003946 523 ---SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI----PRSGHQ 595 (784)
Q Consensus 523 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~ 595 (784)
....--.+-++...|++.++++.|+.|...|......+--.+..+|...+++++|+.+++++..... .+++..
T Consensus 289 ~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~ 368 (822)
T PRK14574 289 ADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLL 368 (822)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchH
Confidence 2222345677888999999999999999888665667889999999999999999999999866431 233444
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCC------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQR------------IDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHL 662 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 662 (784)
....|.-++...+++++|..+++.+.+..+ ..|| ...+..++..+...|++.+|++.++++... .
T Consensus 369 ~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--a 446 (822)
T PRK14574 369 DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--A 446 (822)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 467899999999999999999999987433 1122 233455677889999999999999999875 4
Q ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003946 663 P-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDK 740 (784)
Q Consensus 663 p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 740 (784)
| |......+...+...| ...+|+..++.... +.| +..+.......+...|+|++|.++.+...+. .|+.
T Consensus 447 P~n~~l~~~~A~v~~~Rg-~p~~A~~~~k~a~~------l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~ 517 (822)
T PRK14574 447 PANQNLRIALASIYLARD-LPRKAEQELKAVES------LAPRSLILERAQAETAMALQEWHQMELLTDDVISR--SPED 517 (822)
T ss_pred CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhh------hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCc
Confidence 5 7788888888999999 99999999977765 334 4667778888999999999999999988874 6776
Q ss_pred HHHHHH
Q 003946 741 YKYRTL 746 (784)
Q Consensus 741 ~~~~~l 746 (784)
.....|
T Consensus 518 ~~~~~l 523 (822)
T PRK14574 518 IPSQEL 523 (822)
T ss_pred hhHHHH
Confidence 655543
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1e-11 Score=133.99 Aligned_cols=552 Identities=13% Similarity=0.068 Sum_probs=367.1
Q ss_pred hhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHH
Q 003946 106 YGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPAS 185 (784)
Q Consensus 106 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 185 (784)
.+.|.+.|....+.. |+.. ...+.+++...+ -+++..++.++..+...... ..+++....-.++.++|+.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Ni-l~LlGkA~i~yn-kkdY~~al~yyk~al~inp~--~~aD~rIgig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNI-LALLGKARIAYN-KKDYRGALKYYKKALRINPA--CKADVRIGIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhC--Ccch-HHHHHHHHHHhc-cccHHHHHHHHHHHHhcCcc--cCCCccchhhhHHHhccchhhHH
Confidence 588999999888754 4443 355667776643 56778899999997765222 34555555567788999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHH--HHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHh
Q 003946 186 TILRKLVATEQYPPVTAWSAILA--HMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGC 263 (784)
Q Consensus 186 ~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~ 263 (784)
..|.+..+. .| ...++++. .+... +..+..+..+..++. +.- .--.-|++..|.|-..|
T Consensus 220 ~a~~ralqL--dp--~~v~alv~L~~~~l~----~~d~~s~~~~~~ll~--~ay---------~~n~~nP~~l~~LAn~f 280 (1018)
T KOG2002|consen 220 LAFERALQL--DP--TCVSALVALGEVDLN----FNDSDSYKKGVQLLQ--RAY---------KENNENPVALNHLANHF 280 (1018)
T ss_pred HHHHHHHhc--Ch--hhHHHHHHHHHHHHH----ccchHHHHHHHHHHH--HHH---------hhcCCCcHHHHHHHHHH
Confidence 999999885 34 33333332 22211 112245556666555 321 11245677788899999
Q ss_pred hhcCChhHHHHHHHhhhhCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHhcC
Q 003946 264 LLFETTRKAEQLLDIMPRIGVK--ADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLS-DIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g 340 (784)
.-.|+++.++.+...+...-.. .-...|-.+..+|-..|+++.|...|-+..+.+..+ .- .+--|..+|.+.|
T Consensus 281 yfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l----~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 281 YFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL----PLVGLGQMYIKRG 356 (1018)
T ss_pred hhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc----cccchhHHHHHhc
Confidence 9999999999999999875421 112457778899999999999999998887764444 22 3677899999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhh-hhhhhhHHHH
Q 003946 341 DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDF-TKDRKFVALE 419 (784)
Q Consensus 341 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 419 (784)
+++.+...|+....... +.. ..|...|.+ ..........
T Consensus 357 dle~s~~~fEkv~k~~p--------------------------------------~~~--etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLP--------------------------------------NNY--ETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred hHHHHHHHHHHHHHhCc--------------------------------------chH--HHHHHHHhHHHhhhhhhHHH
Confidence 99999999999887531 000 000000000 0000000111
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HHcCCCCCCCHHHHHHHH
Q 003946 420 AEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKA----EKENLQVSHDDAALGHVI 495 (784)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~p~~~~~~~li 495 (784)
..+..++...+ .....|...|-.+-..+.... ...++..|... ...+. .+-....|.+.
T Consensus 397 d~a~~~l~K~~--------------~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~--~ip~E~LNNva 459 (1018)
T KOG2002|consen 397 DKASNVLGKVL--------------EQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGK--QIPPEVLNNVA 459 (1018)
T ss_pred HHHHHHHHHHH--------------hcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCC--CCCHHHHHhHH
Confidence 12222222221 112336667766666665544 33336665543 34553 35566699999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 003946 496 TLCISLGWLDQAHDLLDEMHLA---GVRASS------SVYASLLKAYIEANRPREVTALLRDARSAGIQLDASC-YEALL 565 (784)
Q Consensus 496 ~~~~~~g~~~~a~~~~~~m~~~---g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~li 565 (784)
..+...|+++.|...|...... ...++. .+--.+...+-..++.+.|..+|..+.+. .|+-+. |--+.
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~ 537 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhh
Confidence 9999999999999999988755 122333 22223555566678899999999999876 566554 33333
Q ss_pred HHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH----
Q 003946 566 QSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC---- 641 (784)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~---- 641 (784)
......+...+|...+++..... ..++..++.+...+.+...+..|.+-|..+.......+|+++.-+|...|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 23334578889999999988765 455667888887888888888999877777666555567766655555443
Q ss_pred --------hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 003946 642 --------KKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVL 712 (784)
Q Consensus 642 --------~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li 712 (784)
..+..++|+++|.+.++. .| |...-+.+.-.++..| ++++|..+|.++.+.. .-...+|-.+.
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg-~~~~A~dIFsqVrEa~-----~~~~dv~lNla 687 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKG-RFSEARDIFSQVREAT-----SDFEDVWLNLA 687 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhhhcc-CchHHHHHHHHHHHHH-----hhCCceeeeHH
Confidence 234568899999998875 34 6677777777788888 9999999999998832 22456788899
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhcccc
Q 003946 713 YTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF-LKYHKTLY 755 (784)
Q Consensus 713 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li-~~~~~~~~ 755 (784)
+.|...|++-.|.++|+...+.-.+-|....-..+ ..+...+.
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999888764555555444444 34444333
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.8e-12 Score=125.48 Aligned_cols=436 Identities=12% Similarity=0.053 Sum_probs=276.6
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhc-------------
Q 003946 92 KLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEG------------- 158 (784)
Q Consensus 92 ~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~------------- 158 (784)
+=|.+++ ...+|..+++.-+|+.|.+.|..-+...-..|+.-.+-.++..-.-.-.+.|..|...+
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 3444443 34678999999999999998876555555555544432221110000011111111110
Q ss_pred ----ccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccC
Q 003946 159 ----KQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDG 234 (784)
Q Consensus 159 ----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~ 234 (784)
+-.+-.+.++..+|.++||--..+.|.+++.+-.+...+.+..+||.+|.+-. +...-++..
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S------------~~~~K~Lv~-- 262 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS------------YSVGKKLVA-- 262 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH------------hhccHHHHH--
Confidence 01123677889999999999999999999999998888889999999997532 222234455
Q ss_pred CcCccccccccccCCCCchhhHHHHHHHhhhcCChhH----HHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHH-HHH
Q 003946 235 RVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRK----AEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREE-LRK 309 (784)
Q Consensus 235 ~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-A~~ 309 (784)
+|.. ..+.||..|+|++++..++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 263 EMis--------qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 263 EMIS--------QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred HHHH--------hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 5544 4569999999999999999998875 46789999999999999999999999999887644 444
Q ss_pred HHHHHHhh-----cCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCcc
Q 003946 310 LQRHIDEA-----VNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQN 384 (784)
Q Consensus 310 l~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (784)
+..++... ..|..+.....+-+.++.|.+..+.+-|.++-.-+...+-
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N--------------------------- 387 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN--------------------------- 387 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc---------------------------
Confidence 44444332 2222222222577778888888888888886554443210
Q ss_pred ccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC---CHHHHHHHHHHH
Q 003946 385 VNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP---TEKIYIKLVKAF 461 (784)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~li~~~ 461 (784)
... +.| ..+-|..+....
T Consensus 388 ------------------------------~~~-----------------------------ig~~~~~~fYyr~~~~li 408 (625)
T KOG4422|consen 388 ------------------------------WKF-----------------------------IGPDQHRNFYYRKFFDLI 408 (625)
T ss_pred ------------------------------hhh-----------------------------cChHHHHHHHHHHHHHHH
Confidence 000 122 124566778888
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPRE 541 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 541 (784)
|+....+.....|+.|...- .-|+..+...++.+..-.|.++-..+++.++...|...+...-.
T Consensus 409 cq~es~~~~~~~Y~~lVP~~--y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e-------------- 472 (625)
T KOG4422|consen 409 CQMESIDVTLKWYEDLVPSA--YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE-------------- 472 (625)
T ss_pred HHHHHHHHHHHHHHHhccce--ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH--------------
Confidence 89999999999999998776 68899999999999999999999999999999887433332222
Q ss_pred HHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChhHH-HHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHH
Q 003946 542 VTALLRDARSAGIQLDAS---CYEALLQSKIVQKDTPGA-LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLL 617 (784)
Q Consensus 542 A~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~A-~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 617 (784)
.+...|......|+.- -+.....-|+ -++.++ ...-.+|.+.... ....+.++-.+.+.|+.++|.++|
T Consensus 473 --eil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~~---~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 473 --EILMLLARDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDWP---ATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred --HHHHHHhcCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccCC---hhHHHHHHHHHHHcchHHHHHHHH
Confidence 2333333333334322 1222222221 122222 2233344444442 235566666667777777777777
Q ss_pred HHHHhcCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 618 QEVKEGQRIDCGVHDWN---NVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 618 ~~~~~~~~~~p~~~~y~---~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
..+.....-.|.....| -+++.-.+.+....|...++-|...
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 77744333233333334 4445555666677777777666544
No 29
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=7e-11 Score=125.97 Aligned_cols=618 Identities=10% Similarity=0.018 Sum_probs=330.8
Q ss_pred CCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccc
Q 003946 87 ARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKE 166 (784)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 166 (784)
.||-.+|.++|..||..|+.+.|- +|.-|.-....-+...++.++.+-...++.+..+ .|.++
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------------ep~aD 84 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------------EPLAD 84 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------------CCchh
Confidence 455688888888888888888877 7777766555555667777777766655544422 47889
Q ss_pred hHHHHHHHHhhCCCCcc---HHHHHHHHh----hcCCCCChHHHHHH-HHHHhhcCCC------chhhHHHHHHhhhhhc
Q 003946 167 PLIYLSLGLSKCGLPVP---ASTILRKLV----ATEQYPPVTAWSAI-LAHMSLTAPG------AYLAAELILEIGYLFQ 232 (784)
Q Consensus 167 ~~~~li~~~~~~g~~~~---A~~~~~~m~----~~g~~p~~~~~~~l-l~~~~~~~~~------~~~~~~~~~~a~~~~~ 232 (784)
+|+.|..+|...|++.. ..+.++.+. ..|+. ....|-.+ |+++-..-.. .....|.++.++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998655 222222221 11221 11111111 1111000000 0122366666776665
Q ss_pred cCCcCccccccccccCCCCchhhHHHHHHHhhhcC-ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 003946 233 DGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFE-TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQ 311 (784)
Q Consensus 233 ~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~ 311 (784)
.++... -..|-.+ .|+-+.... .+++-....+...+ .|++.+|.++++.-.-.|+++.|..++
T Consensus 164 --~~Pvsa-------~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 164 --KVPVSA-------WNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred --hCCccc-------ccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 443210 0112222 244333322 22222222222222 488899999999989999999999999
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH-----HHHhch-----hhhhhccCCCCCC
Q 003946 312 RHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNS-----LAAAML-----PFNAVGVNNRTPS 381 (784)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~ 381 (784)
.+|.+.+.|-...+ .|--|+. .++..-+..+++.|.+.|+.|-.. ++..+. .-+...+.+..+.
T Consensus 228 ~emke~gfpir~Hy--FwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHY--FWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHcCCCccccc--chhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhh
Confidence 99998877766654 3444433 778888888888888887643110 000000 0000000000000
Q ss_pred Ccc--ccCCC-----------------------Cccccccccccccccch-------------------hhhhhhhhhHH
Q 003946 382 EQN--VNCTN-----------------------SVDLENSGIIENHILSY-------------------EDFTKDRKFVA 417 (784)
Q Consensus 382 ~~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~ 417 (784)
..+ ..|.+ +.+...+..+|...... -..........
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 000 00000 00111111111111100 00000011111
Q ss_pred HHHHHHHHHHHHhhhHHH-----HHHHH------------hhhcCCcCCC----------------------------HH
Q 003946 418 LEAEVKRVLQTLLGMLQK-----QVELI------------TTEHGILQPT----------------------------EK 452 (784)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~-----~~~~~------------~~~~~~~~p~----------------------------~~ 452 (784)
.+....+.|..+...... ..++. +... ...|| ..
T Consensus 382 ~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 382 FGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 111122222222111000 00000 0000 00111 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG--VRASSSVYASLL 530 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li 530 (784)
.-+.++..|+..-+..++...-+.....- .+ ..|..||+-++.....+.|..+.++..... +..|..-+..+.
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~l---f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDLL---FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 34556666666666666655444433322 23 558999999999999999999999987543 456778889999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC-----------------
Q 003946 531 KAYIEANRPREVTALLRDARSAGI-QLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR----------------- 591 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------------- 591 (784)
+.+.+.+....+..++.++.+.-. .|+ ..+.-.+++.....|+.+...++++-+...|+..
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAA 615 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhh
Confidence 999999999999999999976422 222 4456667777788888888877777666555421
Q ss_pred ------------CcHHHHHHHHHH---------------------HHhcCcHHHHHHHHHHH-----------HhcCCCC
Q 003946 592 ------------SGHQEFEMLVKG---------------------CAQNHEAGLMAKLLQEV-----------KEGQRID 627 (784)
Q Consensus 592 ------------~~~~~~~~ll~~---------------------~~~~~~~~~a~~~~~~~-----------~~~~~~~ 627 (784)
+.+.....+.+. |.+.|++.++.++.+-- ...+.+.
T Consensus 616 ~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~ 695 (1088)
T KOG4318|consen 616 QEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIV 695 (1088)
T ss_pred hhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccc
Confidence 111111111111 22333333332222100 0000011
Q ss_pred C---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 003946 628 C---------GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS 698 (784)
Q Consensus 628 p---------~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~ 698 (784)
| +.....-|+..|.+.|++++|..++.+|. +.|+..+...|...+.+.. .-...-+++.+-.+.-..
T Consensus 696 ~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n-~evdvPe~q~e~ekas~~ 771 (1088)
T KOG4318|consen 696 PLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMN-EEVDVPEIQAETEKASEL 771 (1088)
T ss_pred cHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhc-hhccchhHHHHHHHHHhc
Confidence 1 12233458889999999999999999998 7888888888888777766 444445555443332111
Q ss_pred CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccc
Q 003946 699 TSMNFDEE-LLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTL 754 (784)
Q Consensus 699 ~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~~ 754 (784)
....|... -|.-.+...++-...+.|.++|.+..+.....+..++.-++..+.++.
T Consensus 772 ~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 772 RTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred ccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 22223333 333334444444556689999999999888888888888885555544
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=2.9e-10 Score=112.12 Aligned_cols=247 Identities=12% Similarity=0.136 Sum_probs=166.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 466 KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTAL 545 (784)
Q Consensus 466 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 545 (784)
++.+|.+.-+.....+ +-+......-.......|++++|.+.|.+.....-.-....||+=+ .+-+.|++++|++.
T Consensus 471 ~~~~aqqyad~aln~d---ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~ 546 (840)
T KOG2003|consen 471 DFADAQQYADIALNID---RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDC 546 (840)
T ss_pred chhHHHHHHHHHhccc---ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHH
Confidence 4555555555544433 2333322222233345688888888888888764332333344322 35677888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003946 546 LRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQR 625 (784)
Q Consensus 546 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 625 (784)
|-++... +.-+....--+.+.|-...+..+|++++.+. ..+.|.++....-|...|.+.|+-..|.+.+-.--.-
T Consensus 547 f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-- 621 (840)
T KOG2003|consen 547 FLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-- 621 (840)
T ss_pred HHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--
Confidence 8776432 1235566666777777778888888887554 3456888888888888888888877777665433322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCH
Q 003946 626 IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDE 705 (784)
Q Consensus 626 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~ 705 (784)
+.-++.+..-|..-|....-+++|+..|++..- +.|+..-|-.++..|.+..|++.+|..+++.+.+ .++-|.
T Consensus 622 fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-----kfpedl 694 (840)
T KOG2003|consen 622 FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-----KFPEDL 694 (840)
T ss_pred cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-----hCccch
Confidence 223677777777888888888899999887765 6889999988888777655599999999888875 466688
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 003946 706 ELLDSVLYTFVRGGFFARANEVVA 729 (784)
Q Consensus 706 ~~~~~li~~~~~~g~~~~A~~l~~ 729 (784)
.+..-|++.+...|. .++.+.-+
T Consensus 695 dclkflvri~~dlgl-~d~key~~ 717 (840)
T KOG2003|consen 695 DCLKFLVRIAGDLGL-KDAKEYAD 717 (840)
T ss_pred HHHHHHHHHhccccc-hhHHHHHH
Confidence 888888888877774 33433333
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.48 E-value=1.7e-08 Score=104.64 Aligned_cols=370 Identities=13% Similarity=0.076 Sum_probs=188.4
Q ss_pred cCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhh
Q 003946 247 IAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADS--NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQ 324 (784)
Q Consensus 247 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 324 (784)
.|+.-|...|-.=...|-+.|..-.+..+....+..|+.-.. .||+.-...|.+.+.++-|..+|....+-.+-...
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~s- 551 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKS- 551 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhH-
Confidence 455555556666666666666666666666666666654332 56777777777777777777777776664333322
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccccc
Q 003946 325 FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHIL 404 (784)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (784)
+|...+..=-..|..++-..+|++....
T Consensus 552 ---lWlra~~~ek~hgt~Esl~Allqkav~~------------------------------------------------- 579 (913)
T KOG0495|consen 552 ---LWLRAAMFEKSHGTRESLEALLQKAVEQ------------------------------------------------- 579 (913)
T ss_pred ---HHHHHHHHHHhcCcHHHHHHHHHHHHHh-------------------------------------------------
Confidence 5777666666667777766666665542
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 405 SYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQV 484 (784)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 484 (784)
.+-....|--....+-..|+...|..++...-+..
T Consensus 580 ------------------------------------------~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--- 614 (913)
T KOG0495|consen 580 ------------------------------------------CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--- 614 (913)
T ss_pred ------------------------------------------CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---
Confidence 11122333333344444555555555555555443
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDAS-CYEA 563 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 563 (784)
+.+...|..-+..-....+++.|+.+|.+.... .|+..+|.--+...--.++.++|.+++++..+. -|+-. .|-.
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lm 690 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLM 690 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHH
Confidence 334445555555555555555555555555443 244444444444444445555555555555443 34433 2333
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK 643 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 643 (784)
+-..+-+.++++.|.+.|..-.+. .|.....|-.|...=.+.|.+..|..+|+...-+++ -+...|-..|.+-.+.
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP--k~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP--KNALLWLESIRMELRA 766 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC--CcchhHHHHHHHHHHc
Confidence 333444445555555544432221 233344455555555555555555555555554432 2344455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHH
Q 003946 644 RLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFAR 723 (784)
Q Consensus 644 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 723 (784)
|..+.|..+..+.++. ++-+...|..-|....+.+ +-......+++-. -|+.+.-.+...+....++++
T Consensus 767 gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~-rkTks~DALkkce---------~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQ-RKTKSIDALKKCE---------HDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred CCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcc-cchHHHHHHHhcc---------CCchhHHHHHHHHHHHHHHHH
Confidence 5555555555555443 2223344444444333333 3222222222211 133344444444444444555
Q ss_pred HHHHHHHHHh
Q 003946 724 ANEVVAMMEE 733 (784)
Q Consensus 724 A~~l~~~m~~ 733 (784)
|.+.|.+..+
T Consensus 836 ar~Wf~Ravk 845 (913)
T KOG0495|consen 836 AREWFERAVK 845 (913)
T ss_pred HHHHHHHHHc
Confidence 5555554444
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=3.5e-10 Score=120.33 Aligned_cols=284 Identities=10% Similarity=0.081 Sum_probs=182.6
Q ss_pred cCChhHHHHHHHhhhhCCCCCChhH-HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhH
Q 003946 266 FETTRKAEQLLDIMPRIGVKADSNL-LIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNS 344 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 344 (784)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+..+..... ........+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~---~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP---VEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH---HHHHHHHHHHHCCCHHH
Confidence 588888887777654432 22222 3333444578888888888888887743333221 12234667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHH
Q 003946 345 ASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKR 424 (784)
Q Consensus 345 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (784)
|...++++.+.
T Consensus 172 Al~~l~~~~~~--------------------------------------------------------------------- 182 (398)
T PRK10747 172 ARHGVDKLLEV--------------------------------------------------------------------- 182 (398)
T ss_pred HHHHHHHHHhc---------------------------------------------------------------------
Confidence 88888887763
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH------HHHHHHHHH
Q 003946 425 VLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD------AALGHVITL 497 (784)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~------~~~~~li~~ 497 (784)
.| ++..+..+...|.+.|++++|.+++..+.+... ..++. .+|..++..
T Consensus 183 -----------------------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 183 -----------------------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-GDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred -----------------------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHH
Confidence 33 456777788888888888888888888887762 11221 122333333
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 003946 498 CISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGA 577 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 577 (784)
.....+.+...++++.+.+. .+.+......+...+...|+.++|..++++..+. .||.. ..++.+....++.+++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~a 313 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQL 313 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHH
Confidence 33444455556666655433 2446777778888888888888888888887764 44442 1233344455777888
Q ss_pred HHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 578 LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 578 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
++..+...+.. |+++..+.++...|.+.+++++|.+.|+...+. .|+...|-.+...+.+.|+.++|.+++++-.
T Consensus 314 l~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 314 EKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88887777654 666666666667777777777777777666653 3566666666666677777777766666554
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=4.1e-08 Score=98.09 Aligned_cols=505 Identities=10% Similarity=0.069 Sum_probs=331.2
Q ss_pred hhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhh
Q 003946 141 SKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLA 220 (784)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 220 (784)
.....+|..++++.+.. . ..+...+..-+.+=.++..+..|..++++.+..=+..|..-|.-+. .=-.
T Consensus 86 q~e~~RARSv~ERALdv-d--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y-mEE~-------- 153 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDV-D--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY-MEEM-------- 153 (677)
T ss_pred HHHHHHHHHHHHHHHhc-c--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH-HHHH--------
Confidence 45566677777776654 1 1122233335566678888999999999987653333433333222 1111
Q ss_pred HHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh
Q 003946 221 AELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER 300 (784)
Q Consensus 221 ~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 300 (784)
.|.+..|..+|+ +. ....|+..+|++.|.--.+-...+.|..+|+...- +.|+..+|.-....=-+
T Consensus 154 LgNi~gaRqife--rW----------~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 154 LGNIAGARQIFE--RW----------MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEK 219 (677)
T ss_pred hcccHHHHHHHH--HH----------HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHh
Confidence 277888888998 76 44799999999999999999999999999999876 35999999988888899
Q ss_pred cCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH---HHHHhchhhhhhccCC
Q 003946 301 NGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARN---SLAAAMLPFNAVGVNN 377 (784)
Q Consensus 301 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~~~~~~~~~~~ 377 (784)
+|.+..|..+|+...+.-.. +.....++++....=.++..++.|.-+|.-..+. .|.+ .+...+..|+..=.+.
T Consensus 220 ~g~~~~aR~VyerAie~~~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~ 296 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDK 296 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcch
Confidence 99999999999988775222 2221224455544445566777777777655442 1111 1112222221110000
Q ss_pred CCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHH
Q 003946 378 RTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKL 457 (784)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 457 (784)
... . ..-..+.....+..+. .-.-|-.+|-..
T Consensus 297 ~gI--------------------------E----d~Iv~KRk~qYE~~v~------------------~np~nYDsWfdy 328 (677)
T KOG1915|consen 297 EGI--------------------------E----DAIVGKRKFQYEKEVS------------------KNPYNYDSWFDY 328 (677)
T ss_pred hhh--------------------------H----HHHhhhhhhHHHHHHH------------------hCCCCchHHHHH
Confidence 000 0 0000000001111111 123367788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCH-------HHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDD-------AALGHVITLC---ISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~-------~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
+..-...|+.+...++|++....- +|-. .+|.-+=-+| ....+.+.+.++|+..++. ++...+||.
T Consensus 329 lrL~e~~g~~~~Ire~yErAIanv---pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFa 404 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIANV---PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFA 404 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHccC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHH
Confidence 888889999999999999998664 5533 1222111122 2467899999999999984 566677777
Q ss_pred HHHHHHH----HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH
Q 003946 528 SLLKAYI----EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG 603 (784)
Q Consensus 528 ~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~ 603 (784)
-+=-+|+ ++.++..|.+++.... |..|-..++...|..=.+.++++....+++...+-+ |.+..+|.-....
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAWSKYAEL 480 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHHHHHHHH
Confidence 6655555 6688999999988765 568999999999999999999999999999999876 8889999999888
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcC--
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVT--GYAAIG-- 679 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--a~~~~g-- 679 (784)
=...|+.+.|..+|+-........-....|.+.|+--...|.+++|..+++++++. .+....|-++.. +-...|
T Consensus 481 E~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~ 558 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQE 558 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhcccccccc
Confidence 89999999999999999877655556778999999999999999999999999986 344445554432 111112
Q ss_pred C-----------CHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 680 G-----------KYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 680 ~-----------~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
+ +...|..+|+......+..+.+-. ........+.=...|...+...+-..|+
T Consensus 559 ~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 559 DEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred ccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 1 345677777776554333222111 1122233333344455445554544444
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1e-09 Score=104.31 Aligned_cols=283 Identities=12% Similarity=0.050 Sum_probs=213.2
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCCh
Q 003946 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG-VRAS--SSVYASLLKAYIEANRP 539 (784)
Q Consensus 463 ~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~ 539 (784)
-+.+.++|..+|-+|.+.. +.+..+-.+|.+-|-+.|..+.|+++++.+.++. .+.+ ....--|..=|...|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d---~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED---PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcC---chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3578899999999999876 5666677889999999999999999999998762 1111 23334567778999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcH---HHHHHHHHHHHhcCcHHHHHHH
Q 003946 540 REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGH---QEFEMLVKGCAQNHEAGLMAKL 616 (784)
Q Consensus 540 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~ 616 (784)
|.|+.+|..+.+.| ..-....-.|+..|-...+|++|+++-+++.+.+-.+.+. ..|.-+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998754 3355677889999999999999999999998877543322 2466666667777889999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 003946 617 LQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFA 696 (784)
Q Consensus 617 ~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~ 696 (784)
+.+..+.++. .+..=-.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.| +.++...++..+.+
T Consensus 203 l~kAlqa~~~--cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg-~~~~~~~fL~~~~~-- 277 (389)
T COG2956 203 LKKALQADKK--CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG-KPAEGLNFLRRAME-- 277 (389)
T ss_pred HHHHHhhCcc--ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHH--
Confidence 9998876531 233334566778899999999999999998753334667788999999999 99999999998877
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcccccCCch
Q 003946 697 SSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTP 760 (784)
Q Consensus 697 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~~~~~~a~ 760 (784)
. .+....-..+-..-....-.+.|...+.+-..+ +|+..-+..||..-..+.+.|.+.
T Consensus 278 --~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k 335 (389)
T COG2956 278 --T--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAK 335 (389)
T ss_pred --c--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchh
Confidence 2 233333344444444444456777666665554 799999999997666676666433
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=9.8e-10 Score=117.57 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKE 480 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 480 (784)
.+..+...+.+.|++++|.+++..+.+.
T Consensus 189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 189 VLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3344444444444444444444444443
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=2.3e-10 Score=112.82 Aligned_cols=440 Identities=12% Similarity=0.088 Sum_probs=245.8
Q ss_pred HHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhh--HHHHHHHHHH
Q 003946 258 IALAGCLLFETTRKAEQLLDIMPRIGVKADSNLL-IIMAHIYERNGRREELRKLQRHIDEAVNLSDIQ--FRQFYNCLLS 334 (784)
Q Consensus 258 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~-~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~--~~~~~~~li~ 334 (784)
.+..-|.-.....+|+..|+-+.+...-|+.-.. ..+.+.+.+...+.+|.+.++..... +|+... ...+.+.+--
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq-vpsink~~rikil~nigv 284 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ-VPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh-ccccchhhHHHHHhhcCe
Confidence 3444555667788999999999888777877433 45667788999999999998876664 333222 1123455555
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhh
Q 003946 335 CHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRK 414 (784)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (784)
.|++.|.++.|+.-|+...+... .++.++.+ ++ ..|.
T Consensus 285 tfiq~gqy~dainsfdh~m~~~p----n~~a~~nl---------------------------------~i--~~f~---- 321 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEEAP----NFIAALNL---------------------------------II--CAFA---- 321 (840)
T ss_pred eEEecccchhhHhhHHHHHHhCc----cHHhhhhh---------------------------------hh--hhee----
Confidence 68899999999999998877431 11111110 00 0000
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHhhh---cCCcCCCHHHHHHHHHHH-HHc---CChHHHHHHHHHHHHc-CCCCCC
Q 003946 415 FVALEAEVKRVLQTLLGMLQKQVELITTE---HGILQPTEKIYIKLVKAF-LEA---GKTKELTHFLIKAEKE-NLQVSH 486 (784)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~li~~~-~~~---g~~~~a~~~~~~m~~~-~~~~~p 486 (784)
.......+.++..+.... +.+++. +..-.|+....|-.|..= .++ .+-..|.+..-...+- .+.+.|
T Consensus 322 -i~d~ekmkeaf~kli~ip----~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~ 396 (840)
T KOG2003|consen 322 -IGDAEKMKEAFQKLIDIP----GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAP 396 (840)
T ss_pred -cCcHHHHHHHHHHHhcCC----CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Confidence 001112233333221100 000110 111235555555544321 111 1111122222111111 011233
Q ss_pred CHHH-------------HH--------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH------------
Q 003946 487 DDAA-------------LG--------HVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY------------ 533 (784)
Q Consensus 487 ~~~~-------------~~--------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~------------ 533 (784)
|-.. +. .-..-+.+.|+++.|.+++.-+.+..-+.-...-|.|-..+
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 3210 00 01123567889999988888777653221111111111111
Q ss_pred ------------------------HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC
Q 003946 534 ------------------------IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI 589 (784)
Q Consensus 534 ------------------------~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 589 (784)
...|++++|.+.+++.+...-.-....||+=+ .+-..|++++|++.|-++.. +
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~--i 553 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHA--I 553 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHH--H
Confidence 13466777777777776432111112233222 23456778888887766543 3
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 590 PRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 590 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
..++......+...|.-..+...|.+++...... +..|.....-|.+.|-+.|+-..|.+..-+--.- ++-+..|..
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~ie 630 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIE 630 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHH
Confidence 3445666667777777777777777777666543 2235667788888888888888887776544332 333666766
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 670 SMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFV-RGGFFARANEVVAMMEEGKMFIDKYKYRTLFL 748 (784)
Q Consensus 670 ~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 748 (784)
-|...|.... -+++++.+|++..- +.|+..-|..||..|. +.|++++|.++++....+ ++-|..+...|+
T Consensus 631 wl~ayyidtq-f~ekai~y~ekaal------iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflv- 701 (840)
T KOG2003|consen 631 WLAAYYIDTQ-FSEKAINYFEKAAL------IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLV- 701 (840)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHh------cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHH-
Confidence 6666777777 78888888887743 7789999988886654 668999999999888765 555555555444
Q ss_pred HHhcccccCCchh
Q 003946 749 KYHKTLYKGKTPK 761 (784)
Q Consensus 749 ~~~~~~~~~~a~~ 761 (784)
++.++.....+.+
T Consensus 702 ri~~dlgl~d~ke 714 (840)
T KOG2003|consen 702 RIAGDLGLKDAKE 714 (840)
T ss_pred HHhccccchhHHH
Confidence 4444444434444
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=9.1e-10 Score=117.84 Aligned_cols=293 Identities=13% Similarity=0.054 Sum_probs=213.1
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCC
Q 003946 299 ERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNR 378 (784)
Q Consensus 299 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (784)
...|+++.|.+.+....+.. +.... .+-.....+.+.|+.+.|.+.|.+..+.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~---~~llaA~aa~~~g~~~~A~~~l~~a~~~----------------------- 147 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVL---NLIKAAEAAQQRGDEARANQHLEEAAEL----------------------- 147 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------
Confidence 45788888888887766642 32221 2445556677889999999999887652
Q ss_pred CCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCH--HHHHH
Q 003946 379 TPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTE--KIYIK 456 (784)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~ 456 (784)
.|+. ...-.
T Consensus 148 ---------------------------------------------------------------------~p~~~l~~~~~ 158 (409)
T TIGR00540 148 ---------------------------------------------------------------------AGNDNILVEIA 158 (409)
T ss_pred ---------------------------------------------------------------------CCcCchHHHHH
Confidence 2322 22333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH--
Q 003946 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVY-ASLLKAY-- 533 (784)
Q Consensus 457 li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~-- 533 (784)
....+...|++++|...++.+.+.. +-+..++..+...+.+.|+++.|.+++..+.+.++.+ ...+ ..-..++
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~---P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA---PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHH
Confidence 4677888999999999999999887 5566778899999999999999999999999987543 3333 1111222
Q ss_pred -HHcCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH--Hhc
Q 003946 534 -IEANRPREVTALLRDARSAGI---QLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC--AQN 607 (784)
Q Consensus 534 -~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~--~~~ 607 (784)
...+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. |++......++..+ ...
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCC
Confidence 333333444445555554421 1378889999999999999999999999998865 44432211133333 345
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHH
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTE 687 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~ 687 (784)
++.+.+.+.++...+..+-.|+.....++...+.+.|++++|.+.|+........||...+..+...+.+.| +.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g-~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG-DKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC-CHHHHHH
Confidence 788899999998888765555435677899999999999999999995444335799999999999999999 9999999
Q ss_pred HHHHHHh
Q 003946 688 LWGEMKS 694 (784)
Q Consensus 688 ~~~~m~~ 694 (784)
+|++...
T Consensus 392 ~~~~~l~ 398 (409)
T TIGR00540 392 MRQDSLG 398 (409)
T ss_pred HHHHHHH
Confidence 9998644
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=7.3e-10 Score=118.40 Aligned_cols=458 Identities=12% Similarity=0.073 Sum_probs=269.5
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhh
Q 003946 186 TILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLL 265 (784)
Q Consensus 186 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 265 (784)
.++..|...|+.|+.+||..+|..||.. |+.+.|- +|.-++| ...+-+...|+.++.+..+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~--------gdieaat-if~fm~~----------ksLpv~e~vf~~lv~sh~~ 71 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTK--------GDIEAAT-IFPFMEI----------KSLPVREGVFRGLVASHKE 71 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHccc--------CCCcccc-chhhhhc----------ccccccchhHHHHHhcccc
Confidence 4667788899999999999999999987 5666665 6762344 4567788899999999999
Q ss_pred cCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHH---HHHHHhh----cCCChhhHHHHHHHHHHHHHh
Q 003946 266 FETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKL---QRHIDEA----VNLSDIQFRQFYNCLLSCHLK 338 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l---~~~~~~~----~~~~~~~~~~~~~~li~~~~~ 338 (784)
.++.+.+. .|...||..|..+|.+.||+..-..+ +..+... +..... .| .++..-|.
T Consensus 72 And~Enpk-----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e----~~-fl~k~~c~ 135 (1088)
T KOG4318|consen 72 ANDAENPK-----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPE----RW-FLMKIHCC 135 (1088)
T ss_pred cccccCCC-----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHH----HH-HHhhcccC
Confidence 99988776 68889999999999999997662222 2222211 111111 11 11111222
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHH
Q 003946 339 FGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVAL 418 (784)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (784)
-+....|........-+|. |..+++.... .|...|..-.. ...+.
T Consensus 136 p~~lpda~n~illlv~egl--waqllkll~~-------------------------~Pvsa~~~p~~--------vfLrq 180 (1088)
T KOG4318|consen 136 PHSLPDAENAILLLVLEGL--WAQLLKLLAK-------------------------VPVSAWNAPFQ--------VFLRQ 180 (1088)
T ss_pred cccchhHHHHHHHHHHHHH--HHHHHHHHhh-------------------------CCcccccchHH--------HHHHH
Confidence 2333444433333333332 2222221110 01111110000 00111
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 003946 419 EAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLC 498 (784)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 498 (784)
....+.-++.++.+.... . -.|++.+|..++.+-..+|+.+.|..++.+|++.| ++.+..-|..++-+
T Consensus 181 nv~~ntpvekLl~~cksl--------~-e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g--fpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 181 NVVDNTPVEKLLNMCKSL--------V-EAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG--FPIRAHYFWPLLLG- 248 (1088)
T ss_pred hccCCchHHHHHHHHHHh--------h-cCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC--CCcccccchhhhhc-
Confidence 111111122221111100 1 15899999999999999999999999999999999 45555556666655
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH-----------HHHHHHHH----------------
Q 003946 499 ISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVT-----------ALLRDARS---------------- 551 (784)
Q Consensus 499 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-----------~~~~~m~~---------------- 551 (784)
.++..-+..+..-|.+.|+.|+..|+...+..+.++|....+. .+...|..
T Consensus 249 --~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v 326 (1088)
T KOG4318|consen 249 --INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSV 326 (1088)
T ss_pred --CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 7889999999999999999999999988777666644322111 11111110
Q ss_pred ---------cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc--CCCCCcHHHHHHHHHHHHhcCc-----------
Q 003946 552 ---------AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES--KIPRSGHQEFEMLVKGCAQNHE----------- 609 (784)
Q Consensus 552 ---------~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~~ll~~~~~~~~----------- 609 (784)
.|+......|...+. ....|..++..++-..|..- ...+.+...|..++.-|.+.-+
T Consensus 327 ~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~ 405 (1088)
T KOG4318|consen 327 IGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAG 405 (1088)
T ss_pred HHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 122222222322222 22346666666655555321 1223444455555544433221
Q ss_pred -----------HHHHHHHHHHHHh------------c---CCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 610 -----------AGLMAKLLQEVKE------------G---QRIDC-------GVHDWNNVIHFFCKKRLMQDAEKALKRM 656 (784)
Q Consensus 610 -----------~~~a~~~~~~~~~------------~---~~~~p-------~~~~y~~li~~~~~~g~~~~A~~~~~~m 656 (784)
..+..++...... . ....| --..-+.++..++..-+..+++..-++.
T Consensus 406 qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky 485 (1088)
T KOG4318|consen 406 QGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY 485 (1088)
T ss_pred HHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111100 0 00011 0112356667777777777777665555
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 657 RSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 657 ~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
...-+ | ..|..||.-+..+. ..+.|..+.+++... +..+..|...+..+.+.+.+.+...++.+++.+|.+.
T Consensus 486 e~~lf-~--g~ya~Li~l~~~hd-kle~Al~~~~e~d~~--d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~ 557 (1088)
T KOG4318|consen 486 EDLLF-A--GLYALLIKLMDLHD-KLEYALSFVDEIDTR--DESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSS 557 (1088)
T ss_pred HHHHh-h--hHHHHHhhhHHHHH-HHHHHHhchhhhccc--chhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 54311 2 66889999999999 999999999998763 2345667888999999999999999999999999874
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=1.8e-12 Score=131.66 Aligned_cols=270 Identities=17% Similarity=0.174 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH-VITLCISLGWLDQAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 526 (784)
.|+...+ .+...+.+.|++++|++++.+..... .+|+...|-. +...+...++.+.|...++.+...+.. +...+
T Consensus 6 ~~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~--~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~ 81 (280)
T PF13429_consen 6 GPSEEAL-RLARLLYQRGDYEKALEVLKKAAQKI--APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc-cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 3443333 55778889999999999996644332 1344444444 445556789999999999999987643 56677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 527 ASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
..++.. ...+++++|..+++...+. .++...+..++..+...++++++.++++++....-.+++...|..+...+.+
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 777777 7899999999999887655 4677778889999999999999999999988655446778889999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~ 686 (784)
.|+.++|.+.++...+..+- |....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...| +.++|.
T Consensus 159 ~G~~~~A~~~~~~al~~~P~--~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg-~~~~Al 234 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPD--DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLG-RYEEAL 234 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT--HHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccc-cccccc
Confidence 99999999999999986532 46678899999999999999999998887763 446667888999999999 999999
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 687 ELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 687 ~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..+++..+. .+.|+.....+.+++...|+.++|.++.++...
T Consensus 235 ~~~~~~~~~-----~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 235 EYLEKALKL-----NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHH-----STT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccc-----ccccccccccccccccccccccccccccccccc
Confidence 999998773 233888899999999999999999999887653
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.41 E-value=9.4e-08 Score=99.30 Aligned_cols=500 Identities=14% Similarity=0.077 Sum_probs=285.0
Q ss_pred ccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhccccc
Q 003946 83 ILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQIL 162 (784)
Q Consensus 83 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 162 (784)
+...|.++..|-..+ .....+.|.-++.+..+. .|.. .-|.-++++...++..++ ++....+. .+
T Consensus 373 Le~iP~sv~LWKaAV----elE~~~darilL~rAvec--cp~s---~dLwlAlarLetYenAkk---vLNkaRe~---ip 437 (913)
T KOG0495|consen 373 LEHIPRSVRLWKAAV----ELEEPEDARILLERAVEC--CPQS---MDLWLALARLETYENAKK---VLNKAREI---IP 437 (913)
T ss_pred HHhCCchHHHHHHHH----hccChHHHHHHHHHHHHh--ccch---HHHHHHHHHHHHHHHHHH---HHHHHHhh---CC
Confidence 344456666676544 567777799999888773 2432 345666666444445444 44444443 34
Q ss_pred CccchHHHHHHHHhhCCCCccHHHHHHH----HhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCc
Q 003946 163 LEKEPLIYLSLGLSKCGLPVPASTILRK----LVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDP 238 (784)
Q Consensus 163 ~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~ 238 (784)
.++.++......--..|.++...+++++ +...|+..+...|-.=--.+-+.| .+--...+.. ....
T Consensus 438 td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag--------sv~TcQAIi~--avig 507 (913)
T KOG0495|consen 438 TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG--------SVITCQAIIR--AVIG 507 (913)
T ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC--------ChhhHHHHHH--HHHh
Confidence 5888888877777788899998888876 344577777766654444443331 1111111111 1100
Q ss_pred cccccccccCC--CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 239 RKKCNAPLIAM--KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDE 316 (784)
Q Consensus 239 ~~~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 316 (784)
.|+ .--..||+.--..|.+.+.++-|..+|...++- ++-+...|......--..|..++...+|++...
T Consensus 508 --------igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 508 --------IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred --------hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 111 223458999999999999999999999998874 344667888887777788999999999999888
Q ss_pred hcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccc
Q 003946 317 AVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENS 396 (784)
Q Consensus 317 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (784)
..+.... .|-....-+-..|+...|..++.+..+... ..
T Consensus 579 ~~pkae~----lwlM~ake~w~agdv~~ar~il~~af~~~p-------------------------------------ns 617 (913)
T KOG0495|consen 579 QCPKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEANP-------------------------------------NS 617 (913)
T ss_pred hCCcchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-------------------------------------Cc
Confidence 6554443 588888888889999999999988777431 01
Q ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003946 397 GIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIK 476 (784)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 476 (784)
..+|-..+....- ......++.++.... ...|+...|.--+...-..+..++|.+++++
T Consensus 618 eeiwlaavKle~e------n~e~eraR~llakar---------------~~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 618 EEIWLAAVKLEFE------NDELERARDLLAKAR---------------SISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred HHHHHHHHHHhhc------cccHHHHHHHHHHHh---------------ccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 1111111110000 000111222222111 1345555555555555555666666666666
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 477 AEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQL 556 (784)
Q Consensus 477 m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 556 (784)
..+.- +--...|..+...+-+.++++.|++.|..=.+. ++-.+..|-.|...=-+.|.+-.|..++++-+-++ ..
T Consensus 677 ~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 677 ALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 55543 222234444445555566666666655543332 22234555555555555666666666666665443 23
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 003946 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNV 636 (784)
Q Consensus 557 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~l 636 (784)
|...|...|..=.+.|+.+.|..+..+..+.- |.+...|..-|....+.++-..... .+++ ...|....-.+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~le~~~~rkTks~D---ALkk---ce~dphVllai 823 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWLEPRPQRKTKSID---ALKK---CEHDPHVLLAI 823 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHhccCcccchHHHH---HHHh---ccCCchhHHHH
Confidence 55566666666666666666666655554432 4444455555555544444222222 2222 11244444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 637 IHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 637 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
...+-...++++|.+.|.+..+. .| +..+|.-+..-+..+| .-++-.+++.....
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG-~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHG-TEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhC-CHHHHHHHHHHHhc
Confidence 55555555666666666666654 23 2455555566666666 55555555555443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.40 E-value=2.1e-09 Score=114.36 Aligned_cols=259 Identities=11% Similarity=0.047 Sum_probs=203.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALG--HVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
|-....+..+.|+++.|.+.+.++.+.. |+...+. .....+...|+++.|...++.+.+.. +-+......+..
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~----~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~ 195 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELA----DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQ 195 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3333455589999999999999998654 5543332 33567888999999999999999876 447888999999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDA-------SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
.|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+.- |+++.....+...+
T Consensus 196 ~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~--~~~~~~~~~~A~~l 273 (398)
T PRK10747 196 AYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT--RHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH--hCCHHHHHHHHHHH
Confidence 999999999999999999987654322 234444544445556667777777765432 56778899999999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHH
Q 003946 605 AQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYT 683 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~ 683 (784)
...|+.+.|.++++...+.. |+.. -.++.+....++.+++++..++..+. .|+ ...+..+...|...+ +++
T Consensus 274 ~~~g~~~~A~~~L~~~l~~~---~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~-~~~ 345 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKRQ---YDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHG-EWQ 345 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC---CCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCC-CHH
Confidence 99999999999999888743 3441 22344445669999999999999975 564 556778888999999 999
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 684 EVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 684 ~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
+|.+.|+...+ ..|+...|..|...+.+.|+.++|.+++++-..
T Consensus 346 ~A~~~le~al~------~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 346 EASLAFRAALK------QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999987 579999999999999999999999999987754
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=3.3e-12 Score=129.72 Aligned_cols=186 Identities=17% Similarity=0.113 Sum_probs=63.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChH
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG-VRASSSVYASLLKAYIEANRPR 540 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~ 540 (784)
...+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERD----GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccccccccc----cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 34455555555544433221 223334444444455555555555555544321 2234444555555555555555
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003946 541 EVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE 619 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 619 (784)
+|...+++..+. .| |....+.++..+...|+.+++.++++...+.. |+++..+..+..+|...|+.++|...|+.
T Consensus 164 ~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 164 KALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccc
Confidence 555555555443 23 23444445555555555555444444444432 23333444555555555555555555555
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 620 VKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 620 ~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
.....+ .|......+.+++...|+.++|.++..+..
T Consensus 240 ~~~~~p--~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 240 ALKLNP--DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHST--T-HHHHHHHHHHHT----------------
T ss_pred cccccc--cccccccccccccccccccccccccccccc
Confidence 544322 144445566666666666666666655443
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.34 E-value=3.8e-08 Score=106.31 Aligned_cols=370 Identities=12% Similarity=0.107 Sum_probs=269.3
Q ss_pred HHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcC
Q 003946 261 AGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (784)
..+++ |+.++|..++.+.++.. +.+...|-+|...|-..|+.+++...+-.....++.+. . .|-.+-....+.|
T Consensus 148 ~lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-e---~W~~ladls~~~~ 221 (895)
T KOG2076|consen 148 NLFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-E---LWKRLADLSEQLG 221 (895)
T ss_pred HHHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-H---HHHHHHHHHHhcc
Confidence 34445 99999999999999875 55778999999999999999999887766555444444 3 5999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHH
Q 003946 341 DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEA 420 (784)
Q Consensus 341 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (784)
.+++|.-.|.+..+.+
T Consensus 222 ~i~qA~~cy~rAI~~~---------------------------------------------------------------- 237 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN---------------------------------------------------------------- 237 (895)
T ss_pred cHHHHHHHHHHHHhcC----------------------------------------------------------------
Confidence 9999999999888742
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHH----HHHHH
Q 003946 421 EVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAAL----GHVIT 496 (784)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~----~~li~ 496 (784)
+++...+--=+..|-+.|+...|...|.++....+ +.|..-+ -.++.
T Consensus 238 ---------------------------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 238 ---------------------------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIRRVAH 288 (895)
T ss_pred ---------------------------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHH
Confidence 23444444456678899999999999999987752 2222222 23456
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH--------------
Q 003946 497 LCISLGWLDQAHDLLDEMHLAG-VRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY-------------- 561 (784)
Q Consensus 497 ~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------------- 561 (784)
.+...++-+.|.+.++.....+ -..+...++.++..|.+...++.|......+......+|..-|
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 6677777788888888777532 2345677888999999999999999988888763333333222
Q ss_pred --------H----HHHHHHHHcCChhHHHHHHHHhHhcCCC-CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003946 562 --------E----ALLQSKIVQKDTPGALHLFKEMKESKIP-RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC 628 (784)
Q Consensus 562 --------~----~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 628 (784)
. -++-++......+....+.....+.+.. .+....|.-+..++...|++.+|..+|..+....+. -
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~-~ 447 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY-Q 447 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc-c
Confidence 1 1222333334444444444444554432 344557888899999999999999999999976643 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc----cCCCCCC
Q 003946 629 GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFA----SSTSMNF 703 (784)
Q Consensus 629 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~----~~~~~~p 703 (784)
+...|--+..+|-..|..++|.+.++..+.. .|+ ...-..|-..+...| +.++|.+.++.+..-. +.....|
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g-~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLG-NHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcC-CHHHHHHHHhcccCCCccchhhccccH
Confidence 4778999999999999999999999999984 565 334445566677788 9999999999865321 1134566
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 704 DEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 704 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
+...--...+.|...|+.++=..+...|..
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 677777788889999998887766666654
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.34 E-value=3.1e-08 Score=106.92 Aligned_cols=329 Identities=15% Similarity=0.135 Sum_probs=244.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCC
Q 003946 298 YERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNN 377 (784)
Q Consensus 298 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (784)
..-.|++++|.+++.++.+.++....+ |-+|-..|-..|+.+++...+-..-.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~a----y~tL~~IyEqrGd~eK~l~~~llAAH----------------------- 201 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIA----YYTLGEIYEQRGDIEKALNFWLLAAH----------------------- 201 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhh----HHHHHHHHHHcccHHHHHHHHHHHHh-----------------------
Confidence 333499999999999999988777775 99999999999999999876532211
Q ss_pred CCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHH
Q 003946 378 RTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIK 456 (784)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~ 456 (784)
+.| |...|-.
T Consensus 202 ---------------------------------------------------------------------L~p~d~e~W~~ 212 (895)
T KOG2076|consen 202 ---------------------------------------------------------------------LNPKDYELWKR 212 (895)
T ss_pred ---------------------------------------------------------------------cCCCChHHHHH
Confidence 234 7789999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHH
Q 003946 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSS----VYASLLKA 532 (784)
Q Consensus 457 li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~ 532 (784)
+-....+.|.+++|.-.|.+..+.. +++...+---...|-+.|+...|..-|.++.+...+.|.. ..-..+..
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~---p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQAN---PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999887 5665555556778889999999999999999875322322 22345666
Q ss_pred HHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcH-----------------
Q 003946 533 YIEANRPREVTALLRDARSA-GIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGH----------------- 594 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----------------- 594 (784)
|-..++.+.|.+.++..... +-..+...++.++..|.+...++.|......+......+++.
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 77778889999988887652 223455678889999999999999998888777621111110
Q ss_pred ----HHH----HHHHHHHHhcCcHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003946 595 ----QEF----EMLVKGCAQNHEAGLMAKLLQEVKEGQR-IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA 665 (784)
Q Consensus 595 ----~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 665 (784)
..| .-+.-++.+....+....+.......+- +.-+...|.-+..+|...|++.+|+.+|..+......-+.
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 011 1122233444444444445444444331 2224567889999999999999999999999987544567
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 666 QTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 666 ~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
..|.-+...|...| .+++|.+.++++... .| +...-.+|...|-+.|+.++|.+.+..|.
T Consensus 450 ~vw~~~a~c~~~l~-e~e~A~e~y~kvl~~------~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 450 FVWYKLARCYMELG-EYEEAIEFYEKVLIL------APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhHHHHHHHHHHh-hHHHHHHHHHHHHhc------CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 78888999999999 999999999999873 23 34455677888999999999999999975
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.1e-09 Score=114.44 Aligned_cols=271 Identities=10% Similarity=-0.001 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLD-EMHLAGVRASSSVYASLL 530 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~~~~~~~~~li 530 (784)
....-+..+|-..+++++|.++|+.+.+..+-..-+..+|.+.+..+-+. -+...+. ++.+. -+-.+.+|-++-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~-~~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDT-DPNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhh-CCCCcHHHHHhc
Confidence 55667888999999999999999999887643445677898888765432 2222222 22222 133679999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
++|+-+++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+...... |..-.+|.-+...|.+.++
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--~rhYnAwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD--PRHYNAWYGLGTVYLKQEK 504 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--chhhHHHHhhhhheeccch
Confidence 9999999999999999999875 45 67888888888888899999999999877543 5556677788899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Q 003946 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELW 689 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~ 689 (784)
++.|+-.|++..+-++ .+.+....+...+-+.|+.|+|++++++.....-+ |+.+----...+...+ ++++|...+
T Consensus 505 ~e~Ae~~fqkA~~INP--~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~-~~~eal~~L 580 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINP--SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLG-RYVEALQEL 580 (638)
T ss_pred hhHHHHHHHhhhcCCc--cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhc-chHHHHHHH
Confidence 9999999999998653 26677788888899999999999999999875322 3333333455666678 999999999
Q ss_pred HHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003946 690 GEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKY 741 (784)
Q Consensus 690 ~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 741 (784)
+++++ +.| +...|..+...|.+.|+.+.|+.-|.-|.+..-+++..
T Consensus 581 EeLk~------~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 581 EELKE------LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHHHH------hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 99998 334 56678899999999999999999999998765444443
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=5.8e-08 Score=97.58 Aligned_cols=398 Identities=14% Similarity=0.053 Sum_probs=254.6
Q ss_pred HHHHHHHhhhcCChhHHHHHHHhhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 256 FNIALAGCLLFETTRKAEQLLDIMPRIGVKAD-SNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 256 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
+-+.-.-|.+.|.+++|++.|.+.++. .|| +.-|.....+|...|+++...+--....+.++.... .+..-..
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~K----Al~RRA~ 191 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVK----ALLRRAS 191 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHH----HHHHHHH
Confidence 334445677899999999999999884 588 778888989999999999988877666664333322 4666667
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhh
Q 003946 335 CHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRK 414 (784)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (784)
++-+.|++++|+.-+.-..-.+-+.-+++
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~--------------------------------------------------- 220 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASI--------------------------------------------------- 220 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchh---------------------------------------------------
Confidence 77788888877654322221110000000
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHH-----------------------HHHHHHHHHHH--cC---C
Q 003946 415 FVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEK-----------------------IYIKLVKAFLE--AG---K 466 (784)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----------------------~~~~li~~~~~--~g---~ 466 (784)
..-++..+.... +......+...+..+-|+.. +...+..++.. .+ .
T Consensus 221 ----~~~~eR~Lkk~a--~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~ 294 (606)
T KOG0547|consen 221 ----EPMAERVLKKQA--MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEG 294 (606)
T ss_pred ----HHHHHHHHHHHH--HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchh
Confidence 000000000000 00000000000111122222 22222222211 11 2
Q ss_pred hHHHHHHHHHHHHcCCCCCCC-----H------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 467 TKELTHFLIKAEKENLQVSHD-----D------AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE 535 (784)
Q Consensus 467 ~~~a~~~~~~m~~~~~~~~p~-----~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 535 (784)
+.+|...+.+-..... ..++ . .+......-+.-.|+...|.+-|+..++....++. .|--+..+|..
T Consensus 295 Y~~a~~~~te~~~~~~-~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d 372 (606)
T KOG0547|consen 295 YLKAYDKATEECLGSE-SSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYAD 372 (606)
T ss_pred HHHHHHHHHHHhhhhh-hhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhh
Confidence 3334333333211100 1111 1 11111222334578899999999999987644333 36677788999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHH
Q 003946 536 ANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAK 615 (784)
Q Consensus 536 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 615 (784)
..+.++....|++..+.+. -|..+|-.=-..+.-.+++++|+.=|++.+... |.+...|.-+.-+..+.+++++++.
T Consensus 373 ~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~ 449 (606)
T KOG0547|consen 373 ENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMK 449 (606)
T ss_pred hhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887652 355666666666777788999999999998865 8888888888888899999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHH--HHHHHHHHHcCCCHHHHH
Q 003946 616 LLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-------AQTF--HSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 616 ~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~--~~ll~a~~~~g~~~~~a~ 686 (784)
.|++.+.+.+.- ...||-....+...+++++|.+.|+..++. .|+ ..++ -.++. +.-.+ +++.|.
T Consensus 450 ~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~-d~~~a~ 523 (606)
T KOG0547|consen 450 TFEEAKKKFPNC--PEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWKE-DINQAE 523 (606)
T ss_pred HHHHHHHhCCCC--chHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh-hchhh-hHHHHH
Confidence 999999987543 456888889999999999999999998874 444 1121 12221 11236 999999
Q ss_pred HHHHHHHhcccCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 687 ELWGEMKSFASSTSMNFDE-ELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 687 ~~~~~m~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
.++++..+ +.|.. ..|..|...-...|+.++|.++|++-..
T Consensus 524 ~Ll~KA~e------~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 524 NLLRKAIE------LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHc------cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999987 44443 4599999999999999999999998764
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=2.3e-08 Score=98.38 Aligned_cols=287 Identities=13% Similarity=0.101 Sum_probs=209.3
Q ss_pred cCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHH
Q 003946 266 FETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSA 345 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 345 (784)
.|++..|.++...-.+.+-.| ...|..-..+--+.|+.+.+-+.+.+..+....+... ++-+........|+.+.|
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~---v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLA---VELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHH---HHHHHHHHHHhCCCchhH
Confidence 699999999999877776332 2456666777888999999999999988863333222 688888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHH
Q 003946 346 SKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRV 425 (784)
Q Consensus 346 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (784)
..-+++..+.+
T Consensus 173 ~~~v~~ll~~~--------------------------------------------------------------------- 183 (400)
T COG3071 173 RENVDQLLEMT--------------------------------------------------------------------- 183 (400)
T ss_pred HHHHHHHHHhC---------------------------------------------------------------------
Confidence 98888877632
Q ss_pred HHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH-------HHHHHHHHHH
Q 003946 426 LQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD-------AALGHVITLC 498 (784)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~-------~~~~~li~~~ 498 (784)
+.++........+|.+.|++.+...++.+|.+.+ +..|. .+|+.++.-.
T Consensus 184 ----------------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 184 ----------------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred ----------------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHH
Confidence 3356788889999999999999999999999988 44443 3466666655
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 003946 499 ISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGAL 578 (784)
Q Consensus 499 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 578 (784)
...+..+.-...++...+. .+-++..-.+++.-+.++|+.++|.++.++..+++..|. -...-.+.+-++.+.-+
T Consensus 240 ~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~ 314 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLI 314 (400)
T ss_pred hccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHH
Confidence 5555555544555555443 344677777888889999999999999999988876665 22223344556666666
Q ss_pred HHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 579 HLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 579 ~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
+..++-.+.. |.++-.+.+|...|.+.+.+.+|...|+.... ..|+..+|+-+.++|.+.|+.++|.+.+++-..
T Consensus 315 k~~e~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 315 KAAEKWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6666555443 55556777888888888888888888876665 446777888888888888888888887777664
Q ss_pred C
Q 003946 659 L 659 (784)
Q Consensus 659 ~ 659 (784)
.
T Consensus 390 ~ 390 (400)
T COG3071 390 L 390 (400)
T ss_pred H
Confidence 3
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=1.2e-09 Score=113.90 Aligned_cols=199 Identities=11% Similarity=-0.027 Sum_probs=139.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
+-.+.+|-++-++|.-+++.+.|++.|++..+.+ +-...+|+.+..=+....++|.|...|+..+.. |...||
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld---p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYn 490 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD---PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYN 490 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC---CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhH
Confidence 3356788888888888888888888888887765 447777887777777888888888888776654 555555
Q ss_pred H---HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 528 S---LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 528 ~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
+ |.-.|.|.++++.|+-.|++..+.+ ..+.+....+...+.+.|+.++|++++++..... |.++-.---....+
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCKYHRASIL 567 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhHHHHHHHH
Confidence 4 5566888888888888888887664 2356666677777778888888888888877655 44443434444455
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 605 AQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
...+++++|...++++++ +.|+ ...|-.+...|.+.|+.+.|+.-|.-+.+.
T Consensus 568 ~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 556666666666666666 3343 445666666666666666666666666654
No 49
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=4.4e-12 Score=89.86 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=48.8
Q ss_pred CchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh
Q 003946 251 PNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER 300 (784)
Q Consensus 251 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 300 (784)
||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 50
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=8.9e-12 Score=88.25 Aligned_cols=50 Identities=26% Similarity=0.489 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003946 628 CGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA 677 (784)
Q Consensus 628 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 677 (784)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=3.1e-07 Score=91.97 Aligned_cols=435 Identities=10% Similarity=0.063 Sum_probs=286.8
Q ss_pred HHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCCh-hHHHHHHHHHHh
Q 003946 222 ELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADS-NLLIIMAHIYER 300 (784)
Q Consensus 222 ~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~ 300 (784)
+.+..|..+|+ +.. ++-..+...|---+..-.++..+..|..+++..+.. -|-+ ..|--.+.+=-.
T Consensus 87 ~e~~RARSv~E--RAL---------dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 87 KEIQRARSVFE--RAL---------DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHH--HHH---------hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHH
Confidence 56666777777 432 333566667777777788888899999999888764 2332 444445555667
Q ss_pred cCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCC
Q 003946 301 NGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTP 380 (784)
Q Consensus 301 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (784)
.|++..|.++|+.-..- .|+.. .|++.|..=.+-..++.|..++++..--.
T Consensus 154 LgNi~gaRqiferW~~w-~P~eq----aW~sfI~fElRykeieraR~IYerfV~~H------------------------ 204 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW-EPDEQ----AWLSFIKFELRYKEIERARSIYERFVLVH------------------------ 204 (677)
T ss_pred hcccHHHHHHHHHHHcC-CCcHH----HHHHHHHHHHHhhHHHHHHHHHHHHheec------------------------
Confidence 78999999999887774 44444 49999998888889999999988776411
Q ss_pred CCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHH
Q 003946 381 SEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKA 460 (784)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 460 (784)
|..+ .-+.++.+...+. ....++.+...+..... .-.-+...+++...-
T Consensus 205 ---------------P~v~--~wikyarFE~k~g---~~~~aR~VyerAie~~~-----------~d~~~e~lfvaFA~f 253 (677)
T KOG1915|consen 205 ---------------PKVS--NWIKYARFEEKHG---NVALARSVYERAIEFLG-----------DDEEAEILFVAFAEF 253 (677)
T ss_pred ---------------ccHH--HHHHHHHHHHhcC---cHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHH
Confidence 0000 0011222110000 11112222222211110 001233344444444
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCCCCHHHHHHHH
Q 003946 461 FLEAGKTKELTHFLIKAEKENLQVSHD--DAALGHVITLCISLGWLDQAHDL--------LDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 461 ~~~~g~~~~a~~~~~~m~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~~~g~~~~~~~~~~li 530 (784)
=.++..++.|.-+|.-....- +.+ ...|......=-+-|+....... |+.+.+.+ +-|-.+|--.+
T Consensus 254 Ee~qkE~ERar~iykyAld~~---pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdyl 329 (677)
T KOG1915|consen 254 EERQKEYERARFIYKYALDHI---PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYL 329 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHH
Confidence 456667777777777766542 333 34455444444455654433222 34444433 34677888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HHcCChhHHHHHHHHhHhcCCCCCcHHHHHHH
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQLDA-------SCYEALLQSK---IVQKDTPGALHLFKEMKESKIPRSGHQEFEML 600 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 600 (784)
..-...|+.+...++|++.... ++|-. ..|.-+=.++ ....|.+.+.++++...+ +.|....||.-+
T Consensus 330 rL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKi 406 (677)
T KOG1915|consen 330 RLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKI 406 (677)
T ss_pred HHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHH
Confidence 8888889999999999998765 34422 1222222222 256789999999999887 457777787766
Q ss_pred HHHHH----hcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003946 601 VKGCA----QNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGY 675 (784)
Q Consensus 601 l~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~ 675 (784)
--.|+ +..++..|.+++...... -|-..+|...|..-.+.+++|.+.+++++.++- .| |..+|.-...-=
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG~---cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIGK---CPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhcc---CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHH
Confidence 65555 467899999999888764 477788999999999999999999999999985 46 677887776666
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
...| +.|.|..+|+-..+. ..+......|-+.|+.=...|.+++|..+++++.++ .+...+|-++-
T Consensus 482 ~~Lg-dtdRaRaifelAi~q---p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 482 TSLG-DTDRARAIFELAISQ---PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred HHhh-hHHHHHHHHHHHhcC---cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 6778 999999999998873 334444567888888888999999999999999986 45555777766
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=4.6e-08 Score=93.28 Aligned_cols=291 Identities=11% Similarity=0.080 Sum_probs=192.3
Q ss_pred cCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHH
Q 003946 266 FETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSA 345 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 345 (784)
..+.++|..+|-+|.+.. +-+..+-.+|.+.|-+.|.+|.|.+++..+.++.......-....-.|-.-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 578999999999999843 2344667789999999999999999999998863333332223456677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHH
Q 003946 346 SKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRV 425 (784)
Q Consensus 346 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (784)
.++|..+.+.+.
T Consensus 127 E~~f~~L~de~e-------------------------------------------------------------------- 138 (389)
T COG2956 127 EDIFNQLVDEGE-------------------------------------------------------------------- 138 (389)
T ss_pred HHHHHHHhcchh--------------------------------------------------------------------
Confidence 999999887553
Q ss_pred HHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHH----HHHHHHHHHHHc
Q 003946 426 LQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDA----ALGHVITLCISL 501 (784)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~----~~~~li~~~~~~ 501 (784)
+. .....-|+..|-...++++|+++-+++.+.++ .+..+ -|.-+-..+...
T Consensus 139 ---------------------fa--~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~--q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 139 ---------------------FA--EGALQQLLNIYQATREWEKAIDVAERLVKLGG--QTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred ---------------------hh--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC--ccchhHHHHHHHHHHHHHhhh
Confidence 01 12455688889999999999999998887662 22221 123333344445
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 003946 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLF 581 (784)
Q Consensus 502 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 581 (784)
.+++.|..++....+.+- -++..--.+-+.+...|++..|.+.++...+.+..--..+...|..+|.+.|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 778888888888877642 2445555666778888999999999998887754434456778888888888888888888
Q ss_pred HHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 003946 582 KEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK---KRLMQDAEKALKRMR 657 (784)
Q Consensus 582 ~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~---~g~~~~A~~~~~~m~ 657 (784)
..+.+....+ ..-.++..........+.|...+..-..+ +|+...+..+|+.-.. .|+..+.+.++..|.
T Consensus 273 ~~~~~~~~g~---~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 273 RRAMETNTGA---DAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHccCCc---cHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 8877754222 22333333333333344444444333332 2455555555554322 223334444444444
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6.1e-07 Score=89.90 Aligned_cols=286 Identities=11% Similarity=0.064 Sum_probs=205.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCCHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLD-QAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~ 526 (784)
.-+...-+....+.-...++++|+.+|+++.+.++--.-|..+|..++-.--....+. .|..++ .+ ..+ -+.|.
T Consensus 259 ~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~i--dKy--R~ETC 333 (559)
T KOG1155|consen 259 PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NI--DKY--RPETC 333 (559)
T ss_pred CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hh--ccC--Cccce
Confidence 3344433444445557789999999999999886422346677887774432221211 122221 11 112 34677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 527 ASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
.++.+-|+-.++.++|...|++..+.+ +.....|+.|-.-|....+...|++-++...+-+ |.+...|-.|.++|.-
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDYRAWYGLGQAYEI 410 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--chhHHHHhhhhHHHHH
Confidence 788889999999999999999998764 2355778999999999999999999999998865 8889999999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~ 686 (784)
.+-..-|+-+|++..+-.+ -|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...|-+.+ +.++|.
T Consensus 411 m~Mh~YaLyYfqkA~~~kP--nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~-d~~eAa 486 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKP--NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELK-DLNEAA 486 (559)
T ss_pred hcchHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHH-hHHHHH
Confidence 9999999999999988543 378889999999999999999999999999875 235688899999999999 999999
Q ss_pred HHHHHHHhcccCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 687 ELWGEMKSFASSTSMNFD--EELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 687 ~~~~~m~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
..+++-.+.....|...+ ...-.-|..-+.+.+++++|.........- .+...--+.|+
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~Ll 547 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 999876653222233222 122223556677888888887765554432 34444444444
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=5.3e-08 Score=95.95 Aligned_cols=287 Identities=10% Similarity=0.022 Sum_probs=224.6
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHH
Q 003946 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREV 542 (784)
Q Consensus 463 ~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 542 (784)
..|++.+|.++..+-.+.+ .--...|..-..+.-+.|+.+.+-.++.+..+..-.++....-+........|++..|
T Consensus 96 ~eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 4589999999999987776 2333446666677778999999999999999875567788888888899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcH------HHHHHHHHHHHhcCcHHHHHHH
Q 003946 543 TALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGH------QEFEMLVKGCAQNHEAGLMAKL 616 (784)
Q Consensus 543 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~ 616 (784)
..-++++.+.+. .+.........+|.+.|++.+...++.+|.+.+...+.. .+|..++.-+...+..+.-...
T Consensus 173 ~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 999999988763 467788999999999999999999999999988754332 4577777777777777776777
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 003946 617 LQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFA 696 (784)
Q Consensus 617 ~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~ 696 (784)
++.....-.-. ...-.+++.-+.++|+.++|.++.++..+++..|.. ..+-.+.+.+ +.+.-.+..++-.+.
T Consensus 252 W~~~pr~lr~~--p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~-d~~~l~k~~e~~l~~- 323 (400)
T COG3071 252 WKNQPRKLRND--PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPG-DPEPLIKAAEKWLKQ- 323 (400)
T ss_pred HHhccHHhhcC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCC-CchHHHHHHHHHHHh-
Confidence 77777664433 444678888899999999999999999998777762 2233566666 777777777665542
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcccccCCchhhHHHHH
Q 003946 697 SSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQ 767 (784)
Q Consensus 697 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~~~~~~a~~~~~~~~ 767 (784)
.+-++..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|+.+-..+-+-++..+|.+...+..
T Consensus 324 ----h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 324 ----HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ----CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 233558899999999999999999999997776 58999999999888777777666665555433
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=7.8e-09 Score=102.04 Aligned_cols=201 Identities=15% Similarity=0.047 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. |.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence 4556666667777777777777777765542 2235566666667777777777777777766644 445556666677
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCH
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKY 682 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~ 682 (784)
.+...|++++|.+.++..............+..+...|...|++++|.+.+++..+.. +.+...+..+...+...| ++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG-QY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC-CH
Confidence 7777777777777777766532222234456677778888888888888888887652 224566777777888888 88
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 683 TEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 683 ~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-----YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888887762 234566677777888888888888888777764
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=7.2e-06 Score=85.59 Aligned_cols=470 Identities=12% Similarity=0.072 Sum_probs=265.0
Q ss_pred cchHHHHHHHHhhCCCCccHHHHHHHHhhc-CCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccc
Q 003946 165 KEPLIYLSLGLSKCGLPVPASTILRKLVAT-EQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCN 243 (784)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~ 243 (784)
|..+..-+....+.|++...+..|++.+.. .+......|...|.-.-.. +.++-+..++. +.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~--------~lPets~rvyr--RY------- 164 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH--------GLPETSIRVYR--RY------- 164 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC--------CChHHHHHHHH--HH-------
Confidence 556666677778899999999999987654 3344455788777655444 66677777777 55
Q ss_pred ccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCC------CCCChhHHHHHHHHHHhcCCHHHH---HHHHHHH
Q 003946 244 APLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIG------VKADSNLLIIMAHIYERNGRREEL---RKLQRHI 314 (784)
Q Consensus 244 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~~~~~li~~~~~~g~~~~A---~~l~~~~ 314 (784)
-.+.|. .-+--|.-++..++.++|-+.+....... .+.+...|.-+-+..++.-+.-.. ..+++.+
T Consensus 165 ---Lk~~P~--~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 165 ---LKVAPE--AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred ---HhcCHH--HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 223443 36777888899999999999988876332 234556677776666666544332 2344444
Q ss_pred HhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH--HHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcc
Q 003946 315 DEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRA--KEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVD 392 (784)
Q Consensus 315 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (784)
..+ .++. ....|++|.+-|.+.|.+++|.++|++-.+.- +-.++.+.++|.+|+........-. .+..
T Consensus 240 i~r-ftDq--~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~------a~~~- 309 (835)
T KOG2047|consen 240 IRR-FTDQ--LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMEL------ADEE- 309 (835)
T ss_pred ccc-CcHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhh------hhhc-
Confidence 433 2222 22479999999999999999999999877642 1235677777777765321111000 0000
Q ss_pred ccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhc-CCcCCCHHHHHHHHHHHHHcCChHHHH
Q 003946 393 LENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEH-GILQPTEKIYIKLVKAFLEAGKTKELT 471 (784)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~ 471 (784)
. .......+.+-.+......+..+........ ..-..++..|..-+.. ..|+..+..
T Consensus 310 ----------------~----~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i 367 (835)
T KOG2047|consen 310 ----------------S----GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQI 367 (835)
T ss_pred ----------------c----cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHH
Confidence 0 0000000111111111111111111111100 0012245566554443 345666667
Q ss_pred HHHHHHHHcCCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHH
Q 003946 472 HFLIKAEKENLQV----SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS---SSVYASLLKAYIEANRPREVTA 544 (784)
Q Consensus 472 ~~~~~m~~~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~ 544 (784)
..+.+..+.-.|- +|. ..|..+-+.|-..|+++.|+.+|++..+...+-- ..+|-....+=.+..+++.|.+
T Consensus 368 ~tyteAv~~vdP~ka~Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 368 NTYTEAVKTVDPKKAVGSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred HHHHHHHHccCcccCCCChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 7777765542111 222 3467777788888888888888888776644321 3455555555566677777777
Q ss_pred HHHHHHHcC----------CCC-------CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 545 LLRDARSAG----------IQL-------DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 545 ~~~~m~~~g----------~~p-------~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
+.+....-- ..| +...|.-.+..--..|-++....+++.+.+..+..| .........+...
T Consensus 447 lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP--qii~NyAmfLEeh 524 (835)
T KOG2047|consen 447 LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP--QIIINYAMFLEEH 524 (835)
T ss_pred HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhh
Confidence 776653210 011 123455555555556777778888888887765433 2222222334444
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H-HHcCCC
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGV-HDWNNVIHFFCK---KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTG-Y-AAIGGK 681 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~-~~y~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-~-~~~g~~ 681 (784)
.-++++.+++++-....+. |++ ..||.-+..+.+ .-.++.|..+|++.++ |++|...-+-.|+-+ + -..| .
T Consensus 525 ~yfeesFk~YErgI~LFk~-p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~G-L 601 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKW-PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHG-L 601 (835)
T ss_pred HHHHHHHHHHHcCCccCCC-ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhh-H
Confidence 5567777777766554432 222 346665555543 2247888888888887 566643322222222 1 1234 6
Q ss_pred HHHHHHHHHHHHh
Q 003946 682 YTEVTELWGEMKS 694 (784)
Q Consensus 682 ~~~a~~~~~~m~~ 694 (784)
...|..++++...
T Consensus 602 ar~amsiyerat~ 614 (835)
T KOG2047|consen 602 ARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHHh
Confidence 6667777776554
No 57
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.6e-06 Score=87.02 Aligned_cols=164 Identities=11% Similarity=-0.017 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
.|...+.+-|+-.++.++|...|++..+-+ +-....|+.+.+-|....+...|.+-|+...+.. +.|-..|-.|-+
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQ 406 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhH
Confidence 345556667777788888888888888776 4556667777788888888888888888888765 447788888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
+|.-.+...-|+-.|++..+-. +-|...|.+|-.+|.+.++.++|++.|+.....|- .+...+..|.+.+.+.++.+
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--te~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD--TEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHhHH
Confidence 8888888888888888877653 33777888888888888888888888888887663 34567888888888888888
Q ss_pred HHHHHHHHHHh
Q 003946 612 LMAKLLQEVKE 622 (784)
Q Consensus 612 ~a~~~~~~~~~ 622 (784)
+|.+.|+.-.+
T Consensus 484 eAa~~yek~v~ 494 (559)
T KOG1155|consen 484 EAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHH
Confidence 88877766544
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=7.8e-07 Score=89.69 Aligned_cols=222 Identities=14% Similarity=0.077 Sum_probs=165.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPRE 541 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 541 (784)
.-.|+...|..-|+...... +.+...|.-+-.+|....+.++....|+...+.+.. |..+|-.=..++.-.+++++
T Consensus 337 fL~g~~~~a~~d~~~~I~l~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLD---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhcCCchhhhhhHHHHHhcC---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 44577788889999888766 233333777778888999999999999998887633 55566666666777788999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003946 542 VTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 542 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 621 (784)
|..=|++..... +-+...|--+--+.-+.+.++++...|++..+.- |.-+..|+.....+...++++.|.+.|+...
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999999887642 1134455555555567889999999999988764 7777899999999999999999999999888
Q ss_pred hcCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 622 EGQRI------DCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 622 ~~~~~------~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+..+. .+...+..+++..-- .+++..|++++++..+. .| ....|..|...-.+.| +.++|+++|++...
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~-~i~eAielFEksa~ 565 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRG-KIDEAIELFEKSAQ 565 (606)
T ss_pred hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 74432 122222333333222 38899999999998874 45 4677888888888999 99999999998765
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=3.5e-08 Score=97.35 Aligned_cols=200 Identities=15% Similarity=0.114 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 3455556666666666666666666665543 3334455555556666666666666666655543 22344555555
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..+...|++++|...+++..+....+ ....+..+...+...|++++|...+++..... |.
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----------------- 167 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQ----------------- 167 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC-----------------
Confidence 55555666666666665554421111 22233334444444445555544444444322 22
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Q 003946 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELW 689 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~ 689 (784)
+...+..+...+...|++++|.+.+++..+. ...+...+..+...+...| +.+.|..++
T Consensus 168 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~a~~~~ 226 (234)
T TIGR02521 168 -------------------RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALG-DVAAAQRYG 226 (234)
T ss_pred -------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 2334555666666666666666666666554 2234444555555555566 666666666
Q ss_pred HHHHh
Q 003946 690 GEMKS 694 (784)
Q Consensus 690 ~~m~~ 694 (784)
+.+..
T Consensus 227 ~~~~~ 231 (234)
T TIGR02521 227 AQLQK 231 (234)
T ss_pred HHHHh
Confidence 55543
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.15 E-value=8.1e-06 Score=85.24 Aligned_cols=494 Identities=10% Similarity=0.029 Sum_probs=248.0
Q ss_pred chhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccH
Q 003946 105 RYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPA 184 (784)
Q Consensus 105 ~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 184 (784)
.++.++....+|.+ .+-..+..+.++++.-..+ ..|.+.... -+...+..++...+......|-++.+
T Consensus 90 c~er~lv~mHkmpR--------Iwl~Ylq~l~~Q~~iT~tR---~tfdrALra-LpvtqH~rIW~lyl~Fv~~~~lPets 157 (835)
T KOG2047|consen 90 CFERCLVFMHKMPR--------IWLDYLQFLIKQGLITRTR---RTFDRALRA-LPVTQHDRIWDLYLKFVESHGLPETS 157 (835)
T ss_pred HHHHHHHHHhcCCH--------HHHHHHHHHHhcchHHHHH---HHHHHHHHh-CchHhhccchHHHHHHHHhCCChHHH
Confidence 34455555555543 3444444444444443333 344444333 23334666777777777888888899
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhh
Q 003946 185 STILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCL 264 (784)
Q Consensus 185 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 264 (784)
..++++.++- ++..-+-.|.-+++. +++++|-+.+. .+....+..+ ...+.+...|+-+-...+
T Consensus 158 ~rvyrRYLk~----~P~~~eeyie~L~~~--------d~~~eaa~~la--~vln~d~f~s--k~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 158 IRVYRRYLKV----APEAREEYIEYLAKS--------DRLDEAAQRLA--TVLNQDEFVS--KKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHHHHHHhc----CHHHHHHHHHHHHhc--------cchHHHHHHHH--HhcCchhhhh--hcccchhhHHHHHHHHHH
Confidence 9999988864 444456666666665 77788777666 4432111100 112455667777777776
Q ss_pred hcCChhHHH---HHHHhhhhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhc
Q 003946 265 LFETTRKAE---QLLDIMPRIGVKADS--NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKF 339 (784)
Q Consensus 265 ~~g~~~~A~---~l~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 339 (784)
++.+.-..+ .+++.+... -+|. ..|++|.+-|.+.|.++.|..+|++..... ..... ++.+.+.|+.-
T Consensus 222 ~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v-~tvrD----Ft~ifd~Ya~F 294 (835)
T KOG2047|consen 222 QNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV-MTVRD----FTQIFDAYAQF 294 (835)
T ss_pred hCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-eehhh----HHHHHHHHHHH
Confidence 665544333 334443332 2555 789999999999999999999999977752 21111 55555666543
Q ss_pred CChhHHHHHHHHHH--H----HHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhh
Q 003946 340 GDLNSASKMVLEML--Q----RAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDR 413 (784)
Q Consensus 340 g~~~~A~~~~~~m~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (784)
....-+..+= +- + .+-+.+......+..+....+- ..-+++ .+. + ......|..
T Consensus 295 EE~~~~~~me--~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~--~lNsVl---LRQ-n-~~nV~eW~k----------- 354 (835)
T KOG2047|consen 295 EESCVAAKME--LADEESGNEEDDVDLELHMARFESLMNRRPL--LLNSVL---LRQ-N-PHNVEEWHK----------- 354 (835)
T ss_pred HHHHHHHHHh--hhhhcccChhhhhhHHHHHHHHHHHHhccch--HHHHHH---Hhc-C-CccHHHHHh-----------
Confidence 2211111110 10 0 0001111111111111111000 000000 000 0 000000100
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Q 003946 414 KFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP------TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD 487 (784)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~ 487 (784)
.+.........++...+++...+.| -...|..+.+.|-.+|+++.|..+|++..+.. -+.
T Consensus 355 -----------RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~---y~~ 420 (835)
T KOG2047|consen 355 -----------RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP---YKT 420 (835)
T ss_pred -----------hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC---ccc
Confidence 0111111111112222221111233 23578999999999999999999999987654 222
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------C------CCHHHHHHHHHHHHHcCChHHHHHHH
Q 003946 488 D----AALGHVITLCISLGWLDQAHDLLDEMHLAGV-----------R------ASSSVYASLLKAYIEANRPREVTALL 546 (784)
Q Consensus 488 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----------~------~~~~~~~~li~~~~~~g~~~~A~~~~ 546 (784)
. .+|..-...=.+..+++.|.++.+.....-- + .+...|...++.--..|-++....++
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 2 2333333444456678888887776553211 1 13445666666666778888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh---cCcHHHHHHHHHHHHhc
Q 003946 547 RDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ---NHEAGLMAKLLQEVKEG 623 (784)
Q Consensus 547 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~ 623 (784)
+++.+..+. ++...-.....+-.+.-++++.+++++-+..--.|.....|++.+.-+.+ ...++.|..+|+...+.
T Consensus 501 driidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 501 DRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 888775543 22221112222334445566666665544333233334455555544433 12466677777666653
Q ss_pred CCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 003946 624 QRIDCGVHDWNNVIHFFC----KKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVT 673 (784)
Q Consensus 624 ~~~~p~~~~y~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~ 673 (784)
- .|.. -..+--.|+ +.|....|+.++++.-.. +++. ...|++.|.
T Consensus 580 C--pp~~--aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 580 C--PPEH--AKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred C--CHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 2 1221 122222232 345566666666664432 3332 234555443
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.4e-06 Score=89.74 Aligned_cols=230 Identities=15% Similarity=0.064 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKA 532 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 532 (784)
.+-.=|.++.+.|+..+-..+=.++.... +-...+|-++.--|...|+..+|++.|.+....+-. =...|-.+...
T Consensus 280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~y---P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghs 355 (611)
T KOG1173|consen 280 CLPLHIACLYELGKSNKLFLLSHKLVDLY---PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHS 355 (611)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHhC---CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHH
Confidence 33334445555555555555555555443 344445555555555555566666655554433211 12345555555
Q ss_pred HHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcH
Q 003946 533 YIEANRPREVTALLRDARSA--GIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEA 610 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 610 (784)
|+-.|..++|...+....+. |.. -+..|. ---|.+.++.+.|.+.|.+... +.|.++...+-+.-...+.+.+
T Consensus 356 fa~e~EhdQAmaaY~tAarl~~G~h-lP~LYl--gmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y 430 (611)
T KOG1173|consen 356 FAGEGEHDQAMAAYFTAARLMPGCH-LPSLYL--GMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEY 430 (611)
T ss_pred hhhcchHHHHHHHHHHHHHhccCCc-chHHHH--HHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhh
Confidence 55555555555555544321 110 111111 1223344555555555554433 3355555555555555555555
Q ss_pred HHHHHHHHHHHhcCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHH
Q 003946 611 GLMAKLLQEVKEGQR----IDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEV 685 (784)
Q Consensus 611 ~~a~~~~~~~~~~~~----~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a 685 (784)
.+|..+|+.....-+ -.+ ...+++.|.++|.+.+.+++|+..+++.+.. ..-|..++.++.-.|...| +++.|
T Consensus 431 ~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llg-nld~A 508 (611)
T KOG1173|consen 431 PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLG-NLDKA 508 (611)
T ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhc-ChHHH
Confidence 555555544431100 000 2234555555555555555555555555543 1224555555555555555 55555
Q ss_pred HHHHHHHH
Q 003946 686 TELWGEMK 693 (784)
Q Consensus 686 ~~~~~~m~ 693 (784)
...|.+..
T Consensus 509 id~fhKaL 516 (611)
T KOG1173|consen 509 IDHFHKAL 516 (611)
T ss_pred HHHHHHHH
Confidence 55555554
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.12 E-value=2.2e-05 Score=82.48 Aligned_cols=380 Identities=12% Similarity=0.053 Sum_probs=238.7
Q ss_pred CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHH
Q 003946 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFY 329 (784)
Q Consensus 250 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~ 329 (784)
..+.++|..+--.+-...++++|++.|....+.+ +-|...+-.+--.=.+.|+++.....-....+..+.... .|
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra----~w 146 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA----SW 146 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH----HH
Confidence 3445667766655656788999999999888754 234455655544456677887777766666664333333 59
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhh
Q 003946 330 NCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDF 409 (784)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (784)
..+.-++.-.|+...|..+++...+...
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~---------------------------------------------------- 174 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQN---------------------------------------------------- 174 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------------------------------------
Confidence 9999999999999999999998887431
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHH------HHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003946 410 TKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYI------KLVKAFLEAGKTKELTHFLIKAEKENLQ 483 (784)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~li~~~~~~g~~~~a~~~~~~m~~~~~~ 483 (784)
..|+...|. -......+.|..++|.+.+..-...
T Consensus 175 -------------------------------------~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--- 214 (700)
T KOG1156|consen 175 -------------------------------------TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--- 214 (700)
T ss_pred -------------------------------------cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---
Confidence 012221111 1223456777888888877665443
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCChHHHH-HHHHHHHHcCC---CCC
Q 003946 484 VSHDDAA-LGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA-SLLKAYIEANRPREVT-ALLRDARSAGI---QLD 557 (784)
Q Consensus 484 ~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~~g~---~p~ 557 (784)
..|... -.+-..-+.+.+++++|..++..+.... ||-.-|. .+..++.+--+..++. .+|....+.-. .|-
T Consensus 215 -i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 215 -IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred -HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 223322 2333456678899999999999998874 5555544 4445554444444444 66666654311 111
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cC--------C
Q 003946 558 ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE----GQ--------R 625 (784)
Q Consensus 558 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~--------~ 625 (784)
-...+.+ .+ ..-.+..-.++..+.+.|+ |+ ++..+...|-.....+-.+++.-.+.. .+ .
T Consensus 292 Rlplsvl-~~---eel~~~vdkyL~~~l~Kg~-p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 292 RLPLSVL-NG---EELKEIVDKYLRPLLSKGV-PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred hccHHHh-Cc---chhHHHHHHHHHHHhhcCC-Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 1111111 11 1122334455666667776 32 566666666554443333333322221 10 0
Q ss_pred -CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCC
Q 003946 626 -IDCGVHD--WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ-TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSM 701 (784)
Q Consensus 626 -~~p~~~~--y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~ 701 (784)
-.|.... +-.++..|-+.|+++.|+..++...+. .|+.+ -|..=.+.+.+.| ++++|..++++..+. -
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G-~l~eAa~~l~ea~el-----D 435 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAG-LLDEAAAWLDEAQEL-----D 435 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhc-----c
Confidence 1344444 456888999999999999999998874 67644 3444457888889 999999999999873 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 702 NFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 702 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
.||..+-.--..-..++++.++|.++.......|. +....-.-+
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~m 479 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEM 479 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHh
Confidence 35666655777788899999999999999998886 555555555
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=5.9e-08 Score=108.07 Aligned_cols=163 Identities=12% Similarity=-0.057 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++...+.... +...+..+
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~ 412 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITK 412 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHH
Confidence 45566666666677777777777777776665 444555666666777777777777777777665422 22222333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+..+...|++++|...+++..+.. .| +...+..+..++...|+.++|...++++.... |......+.+...+...|
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccH
Confidence 444555667777777777665442 23 33345555566666777777777766654332 333333333444444444
Q ss_pred cHHHHHHHHHHHH
Q 003946 609 EAGLMAKLLQEVK 621 (784)
Q Consensus 609 ~~~~a~~~~~~~~ 621 (784)
+.+...++.+.
T Consensus 490 --~~a~~~l~~ll 500 (553)
T PRK12370 490 --ERALPTIREFL 500 (553)
T ss_pred --HHHHHHHHHHH
Confidence 24444444433
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=8.1e-08 Score=106.95 Aligned_cols=265 Identities=9% Similarity=-0.059 Sum_probs=154.3
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 003946 450 TEKIYIKLVKAFLE-----AGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS---------LGWLDQAHDLLDEMH 515 (784)
Q Consensus 450 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 515 (784)
+...|...+.+-.. .+.+++|..+|++..+.. +-+...|..+..++.. .+++++|...+++..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 44455555554322 123567888888877665 3334445444444332 234677888887777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHH
Q 003946 516 LAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQ 595 (784)
Q Consensus 516 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 595 (784)
+.+ +-+...+..+...+...|++++|...|++..+.+ +.+...|..+...+...|++++|+..+++..+.. |.+..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~ 407 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA 407 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh
Confidence 764 2356677777777777788888888888877653 2245566777777777788888888888777765 44443
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTF-HSMVT 673 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~ 673 (784)
.+..++..+...|++++|...+++...... | +...+..+..+|...|+.++|...++++... .|+..+. +.+..
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~--p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~ 483 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHL--QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYA 483 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhcc--ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHH
Confidence 444444455666777777777777655421 2 2334566667777777777777777776543 3443333 33333
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 674 GYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 674 a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
.|...| +.+...++.+.+... ..|....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 484 ~~~~~g---~~a~~~l~~ll~~~~---~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 484 EYCQNS---ERALPTIREFLESEQ---RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHhccH---HHHHHHHHHHHHHhh---HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 444444 466666666554221 11211112 33344445565555555 666654
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.5e-06 Score=86.03 Aligned_cols=287 Identities=11% Similarity=0.025 Sum_probs=226.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
.-+......-..-|-..+++.+..++++...+.. ++....+..-|.++...|+..+-..+=..|.+. .+-...+|-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d---pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD---PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 4455666667777788899999999999998876 566666777778888999988887777788776 344678999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
++..-|.-.|+..+|.+.|.+.... .|. ...|-.+-.+|+-.|..++|+..+....+.- |..+.-+-.+..-|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHH
Confidence 9999999999999999999987643 222 3478888999999999999999988776642 2223334555667899
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC---C-CCHHHHHHHHHHHHHcCC
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL--GH---L-PNAQTFHSMVTGYAAIGG 680 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~-p~~~~~~~ll~a~~~~g~ 680 (784)
.++++.|.++|.......+. |....+-+.-..-..+.+.+|..+|+..+.. .+ + --..+++.|..+|.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~--Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~- 469 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS--DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN- 469 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC--cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh-
Confidence 99999999999999886543 4555666666667788899999999887732 01 1 13557888889999999
Q ss_pred CHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 003946 681 KYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHK 752 (784)
Q Consensus 681 ~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 752 (784)
.+++|+..+++.... .+-+..+|.++.-.|...|+++.|.+.|.+... +.||..+-+.++.....
T Consensus 470 ~~~eAI~~~q~aL~l-----~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLL-----SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHHHHHHHHHHc-----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 999999999998873 334889999999999999999999999999876 69999999999954433
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=1.7e-06 Score=93.15 Aligned_cols=293 Identities=15% Similarity=0.133 Sum_probs=193.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhc
Q 003946 295 AHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVG 374 (784)
Q Consensus 295 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 374 (784)
...+...|++++|.+.++.-... .++... +.......+.+.|+.++|..++..+..++
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~---~~E~rA~ll~kLg~~~eA~~~y~~Li~rN------------------ 68 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLA---VLEKRAELLLKLGRKEEAEKIYRELIDRN------------------ 68 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------------
Confidence 34467778888888877665553 333332 46777777888888888888888877743
Q ss_pred cCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCH-HH
Q 003946 375 VNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTE-KI 453 (784)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~ 453 (784)
|+- .-
T Consensus 69 --------------------------------------------------------------------------Pdn~~Y 74 (517)
T PF12569_consen 69 --------------------------------------------------------------------------PDNYDY 74 (517)
T ss_pred --------------------------------------------------------------------------CCcHHH
Confidence 322 33
Q ss_pred HHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHH
Q 003946 454 YIKLVKAFLEA-----GKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWL-DQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 454 ~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
|..+..+..-. .+.+...++++++.... |.......+.-.+..-..+ ..+..++..+.+.|++ .+|+
T Consensus 75 y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y----p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~ 147 (517)
T PF12569_consen 75 YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY----PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFS 147 (517)
T ss_pred HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC----ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHH
Confidence 33444443222 24566677777766543 2222221121111111122 3455666677777765 3566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC
Q 003946 528 SLLKAYIEANRPREVTALLRDARSA----G----------IQLDAS--CYEALLQSKIVQKDTPGALHLFKEMKESKIPR 591 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~----g----------~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 591 (784)
.|-..|....+..-...++...... + -.|... ++.-+...|-..|+.++|+++.++.+++. |
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--P 225 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--P 225 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--C
Confidence 6666677666666666666665432 1 123443 44556777788999999999999998875 7
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------
Q 003946 592 SGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA------ 665 (784)
Q Consensus 592 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------ 665 (784)
..+..|..-...+-+.|++.+|.+.++.....+. -|-..-+--+..+.++|++++|.+++......+..|-.
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDL--ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 7788999999999999999999999999988654 35555666777788999999999999999887654432
Q ss_pred HHH--HHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 003946 666 QTF--HSMVTGYAAIGGKYTEVTELWGEMKSF 695 (784)
Q Consensus 666 ~~~--~~ll~a~~~~g~~~~~a~~~~~~m~~~ 695 (784)
..| .....+|.+.| ++..|++.|..+.+.
T Consensus 304 c~Wf~~e~a~a~~r~~-~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 304 CMWFETECAEAYLRQG-DYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 133 24456888999 999998888777654
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=9.2e-06 Score=78.65 Aligned_cols=152 Identities=9% Similarity=0.034 Sum_probs=95.3
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccC
Q 003946 169 IYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIA 248 (784)
Q Consensus 169 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~ 248 (784)
.++..+|...|++++|..++.-+.+..- |+...|-.|-.++-- -|.+.+|..+-. +
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~-~~~el~vnLAcc~Fy--------Lg~Y~eA~~~~~--k------------- 116 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDD-APAELGVNLACCKFY--------LGQYIEAKSIAE--K------------- 116 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCC-CCcccchhHHHHHHH--------HHHHHHHHHHHh--h-------------
Confidence 3456677788999999999988776533 333333333222222 278888876654 2
Q ss_pred CCCchhhHHHHHHHh-hhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHH
Q 003946 249 MKPNTNTFNIALAGC-LLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQ 327 (784)
Q Consensus 249 ~~p~~~~~~~ll~~~-~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 327 (784)
.|+....+.++-.+ -+.++-++-..+++.+... ..-..+|.+..--.-.+++|.+++..+...++....
T Consensus 117 -a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a---- 186 (557)
T KOG3785|consen 117 -APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA---- 186 (557)
T ss_pred -CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh----
Confidence 34444555555444 4778888877777776542 233445555544455789999999998875433322
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 328 FYNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
.---+.-+|.|..-++-+.+++.-..+
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 122345578888888888888877665
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=5.4e-05 Score=75.12 Aligned_cols=401 Identities=12% Similarity=0.035 Sum_probs=241.5
Q ss_pred CCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccc
Q 003946 87 ARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKE 166 (784)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 166 (784)
+.+...-...+..|...++-+.|+....+.+...- ..--+.++..+.+.|..+. +++. -+...+.+
T Consensus 94 ~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r---~p~inlMla~l~~~g~r~~-~~vl-~ykevvre--------- 159 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLR---SPRINLMLARLQHHGSRHK-EAVL-AYKEVIRE--------- 159 (564)
T ss_pred cccHHHHHHHHHHHHHHccchHHHHHHhcCCcccc---chhHHHHHHHHHhcccccc-HHHH-hhhHHHHh---------
Confidence 44666667788888899999999988876544221 2233566666665543322 2221 11111111
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccc
Q 003946 167 PLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPL 246 (784)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~ 246 (784)
-.-|++.+.-..+.++....++ ++ .|..
T Consensus 160 --------------cp~aL~~i~~ll~l~v~g~e~~--S~----------------------------~m~~-------- 187 (564)
T KOG1174|consen 160 --------------CPMALQVIEALLELGVNGNEIN--SL----------------------------VMHA-------- 187 (564)
T ss_pred --------------cchHHHHHHHHHHHhhcchhhh--hh----------------------------hhhh--------
Confidence 1234444544554444322222 21 1111
Q ss_pred cCCCCchhhHHHHHHHhhh--cCChhHHHHHHHhhhh-CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChh
Q 003946 247 IAMKPNTNTFNIALAGCLL--FETTRKAEQLLDIMPR-IGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDI 323 (784)
Q Consensus 247 ~~~~p~~~~~~~ll~~~~~--~g~~~~A~~l~~~m~~-~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 323 (784)
..+.|+.-+...-+.++++ .++...|.+++--... .-++-|......+.+.+...|+.++|...|+.....++-...
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~ 267 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE 267 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh
Confidence 1223333333334444443 4455555554443332 235567788899999999999999999999997765433222
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccc
Q 003946 324 QFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHI 403 (784)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (784)
. .-.|..| +.+.|+.+....+...+....
T Consensus 268 ~-MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~----------------------------------------------- 296 (564)
T KOG1174|consen 268 A-MDLYAVL---LGQEGGCEQDSALMDYLFAKV----------------------------------------------- 296 (564)
T ss_pred h-HHHHHHH---HHhccCHhhHHHHHHHHHhhh-----------------------------------------------
Confidence 1 0124433 456677777666666555432
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003946 404 LSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQ 483 (784)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 483 (784)
+-....|-.-....-...+++.|+.+-++..+.+
T Consensus 297 --------------------------------------------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-- 330 (564)
T KOG1174|consen 297 --------------------------------------------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-- 330 (564)
T ss_pred --------------------------------------------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--
Confidence 1111223333334446677888888887776655
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 484 VSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563 (784)
Q Consensus 484 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 563 (784)
+-+...|..-...+...|+.++|.-.|+...... +-+..+|..|+..|...|++.+|.-+-+...+. +.-+..+.+.
T Consensus 331 -~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL 407 (564)
T KOG1174|consen 331 -PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTL 407 (564)
T ss_pred -cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh
Confidence 3334444444466778889999998888877653 236788999999999999998887666554322 1224444443
Q ss_pred HH-HHHH-HcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003946 564 LL-QSKI-VQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 564 li-~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 641 (784)
+- ..|. .-..-++|..+++.-.... |.-....+.+...|...|..+++..+++..... .||....+.|.+.+.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMR 482 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHH
Confidence 31 2222 2223567888887766543 665667777777888888888888888887774 368888888888888
Q ss_pred hcCCHHHHHHHHHHHHh
Q 003946 642 KKRLMQDAEKALKRMRS 658 (784)
Q Consensus 642 ~~g~~~~A~~~~~~m~~ 658 (784)
..+.+.+|++.|...+.
T Consensus 483 A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALR 499 (564)
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 88888888888877765
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.94 E-value=4.3e-07 Score=96.30 Aligned_cols=242 Identities=16% Similarity=0.126 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCC
Q 003946 490 ALGHVITLCISLGWLDQAHDLLDEMHLA-----GV-RASSS-VYASLLKAYIEANRPREVTALLRDARSA-----G-IQL 556 (784)
Q Consensus 490 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p 556 (784)
|...+...|...|+++.|..+++...+. |. .|.+. ..+.+...|...+++++|..+|+++... | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666677777777777777665543 21 12222 2233556677777777777777776431 2 112
Q ss_pred C-HHHHHHHHHHHHHcCChhHHHHHHHHhHhc-----CCC-CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--CC
Q 003946 557 D-ASCYEALLQSKIVQKDTPGALHLFKEMKES-----KIP-RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQR--ID 627 (784)
Q Consensus 557 ~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~ 627 (784)
. ..+++.|-.+|.+.|++++|...+++..+- +.. |.-...++.+...|...+++++|..+++...+... +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 235666666777777777766666554321 111 22233466666777788888888887765443222 11
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 003946 628 CG----VHDWNNVIHFFCKKRLMQDAEKALKRMRSL----GH--LP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFA 696 (784)
Q Consensus 628 p~----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~--~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~ 696 (784)
++ ..+|+.|...|-..|++++|++++++.+.. +. .+ ....++-+-.+|.+.+ ++++|.++|.+.....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k-~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK-KYEEAEQLFEEAKDIM 439 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc-ccchHHHHHHHHHHHH
Confidence 22 357999999999999999999999988764 11 22 2456778888998888 9999999998876654
Q ss_pred cCCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 697 SSTSM-NFD-EELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 697 ~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
+..|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22332 233 4579999999999999999999987766
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=9.9e-06 Score=78.43 Aligned_cols=203 Identities=12% Similarity=0.076 Sum_probs=121.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-H----cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKI-V----QKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
.|+--|.+.+++.+|..+.+++.- ..|-......+..+-. + .....-|.+.|+-.-+.+...++..--.++..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 455567788888888887776631 1222233333322221 1 11344566666665555554444434455555
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCC
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTG-YAAIGGK 681 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-~~~~g~~ 681 (784)
.+.-..+++++.-.+..+..-. ..-|...| .+..+++..|.+.+|+++|-++....+ -|..+|.+++.- |.+.+ .
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nk-k 443 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYF-TNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNK-K 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcC-C
Confidence 5556667777777777776543 22244333 467888888999999998876654322 356777766554 44555 7
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003946 682 YTEVTELWGEMKSFASSTSMNFDEE-LLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRT 745 (784)
Q Consensus 682 ~~~a~~~~~~m~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 745 (784)
.+.|+.++-++.. ..+.. ....+.+-|.+++.+=-|.+.|++++. ..|++..|..
T Consensus 444 P~lAW~~~lk~~t-------~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeG 499 (557)
T KOG3785|consen 444 PQLAWDMMLKTNT-------PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEG 499 (557)
T ss_pred chHHHHHHHhcCC-------chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCC
Confidence 8777666544432 11222 234456778888888888888888876 4677777753
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.4e-05 Score=81.24 Aligned_cols=441 Identities=13% Similarity=0.127 Sum_probs=237.8
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHH-
Q 003946 128 VNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAI- 206 (784)
Q Consensus 128 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l- 206 (784)
...++..+-+.+.-+.+++|.....++... .+-+++.+..=+-+..+.+++++|+.+.+.-.. ..+++..
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~---~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~ 82 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSI---VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFF 82 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhc---CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhh
Confidence 357777888888888888888888888765 123555666677788889999999865554321 1222222
Q ss_pred -HHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCc-hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCC
Q 003946 207 -LAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPN-TNTFNIALAGCLLFETTRKAEQLLDIMPRIGV 284 (784)
Q Consensus 207 -l~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~ 284 (784)
=.+||... .+..++|+..++ -. .++ ..+...=-..+-+.|++++|+.+|+++.+++.
T Consensus 83 fEKAYc~Yr------lnk~Dealk~~~--~~-------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 83 FEKAYCEYR------LNKLDEALKTLK--GL-------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHHHH------cccHHHHHHHHh--cc-------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45665432 277888888776 33 222 22444455667789999999999999988764
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q 003946 285 KA-DSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSL 363 (784)
Q Consensus 285 ~p-d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 363 (784)
+- |......++.+-.. -.+. +.+.... ....++...||+- -.++..|++.+|+++++.-...+..+...
T Consensus 142 dd~d~~~r~nl~a~~a~----l~~~-~~q~v~~---v~e~syel~yN~A-c~~i~~gky~qA~elL~kA~~~~~e~l~~- 211 (652)
T KOG2376|consen 142 DDQDEERRANLLAVAAA----LQVQ-LLQSVPE---VPEDSYELLYNTA-CILIENGKYNQAIELLEKALRICREKLED- 211 (652)
T ss_pred chHHHHHHHHHHHHHHh----hhHH-HHHhccC---CCcchHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHhhcc-
Confidence 31 11222222222111 1111 2222222 1122222245543 44677999999999999886654311000
Q ss_pred HHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 003946 364 AAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTE 443 (784)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (784)
+ ... ..+...
T Consensus 212 ------------~------------------------------------d~~---eEeie~------------------- 221 (652)
T KOG2376|consen 212 ------------E------------------------------------DTN---EEEIEE------------------- 221 (652)
T ss_pred ------------c------------------------------------ccc---hhhHHH-------------------
Confidence 0 000 000000
Q ss_pred cCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHH---HHHHcCCHHH--HHHHHH------
Q 003946 444 HGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT---LCISLGWLDQ--AHDLLD------ 512 (784)
Q Consensus 444 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~---~~~~~g~~~~--a~~~~~------ 512 (784)
..+ .+---|.-++-..|+.++|.+++....+.. ++|........+ +...-.++-. +...++
T Consensus 222 ----el~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~---~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 222 ----ELN-PIRVQLAYVLQLQGQTAEASSIYVDIIKRN---PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred ----HHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh
Confidence 001 111234445667788888888888887776 455532222111 1111111100 000000
Q ss_pred ------HHH-----------------------------Hc-CCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCC
Q 003946 513 ------EMH-----------------------------LA-GVRASSSVYASLLKAYIEA--NRPREVTALLRDARSAGI 554 (784)
Q Consensus 513 ------~m~-----------------------------~~-g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~ 554 (784)
.+. .. +..|. ..+.+++....+. ....++..++...-+...
T Consensus 294 ~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 294 AEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 000 00 11122 2233333333222 235556666665554422
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHH--------HhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003946 555 QLDASCYEALLQSKIVQKDTPGALHLFK--------EMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI 626 (784)
Q Consensus 555 ~p~~~t~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 626 (784)
.-.....-.++......|+++.|++++. .+.+.+.. +.+..++...+.+.++-+.|..+++........
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~---P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL---PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC---hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 2223455566666777888888888887 44444433 346677777777777777777766655432210
Q ss_pred -CCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003946 627 -DCGVHDWNNV----IHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMK 693 (784)
Q Consensus 627 -~p~~~~y~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~ 693 (784)
.+.....+++ ...-.+.|+-++|..+++++.+. ..+|..+...++.+|+.. +.+.|..+-..+.
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~--d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL--DPEKAESLSKKLP 518 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc--CHHHHHHHhhcCC
Confidence 1122223333 33334678888888888888875 356777888888888874 4667766655543
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.7e-07 Score=89.41 Aligned_cols=203 Identities=11% Similarity=0.049 Sum_probs=119.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH-VITLCISLGWLDQAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 526 (784)
.|-+.||-.|-.+|.+..++..|+.+|.+-... .|-.+||.. +...+-..++.++|.++|+...+.. +.|+...
T Consensus 253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEai 327 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAI 327 (478)
T ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceee
Confidence 344455555666666666666666666655443 344444332 3344555566666666666666543 2355555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC-CcHHHHHHHHHHHH
Q 003946 527 ASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR-SGHQEFEMLVKGCA 605 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~ll~~~~ 605 (784)
.++...|.-.++.+.|+.+++++.+-|+. +...|+.+--+|.-.++++-++.-|++....-..| .....|..+.....
T Consensus 328 Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 328 ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV 406 (478)
T ss_pred eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE
Confidence 56666666666666666666666666643 55555655555556666666666666555432211 12234555555666
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 606 QNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
..|++..|.+.|+-....+. -....+|.|.-.-.+.|++++|..+++...+
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~--~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDA--QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred eccchHHHHHHHHHHhccCc--chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66677777777766655432 2455677777777777888888877777665
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.88 E-value=1.4e-06 Score=92.59 Aligned_cols=241 Identities=15% Similarity=0.154 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKE-----NLQVSHDDAAL-GHVITLCISLGWLDQAHDLLDEMHLA-----GV- 519 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~-----g~- 519 (784)
.+...+...|...|++++|..++....+. |. ..|...+. +.+-..|...+++++|..+|+++... |-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 45555999999999999999999987654 21 24555433 33667888999999999999998843 21
Q ss_pred -CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---c--CC-CCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHhc----
Q 003946 520 -RASSSVYASLLKAYIEANRPREVTALLRDARS---A--GI-QLDAS-CYEALLQSKIVQKDTPGALHLFKEMKES---- 587 (784)
Q Consensus 520 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--g~-~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~---- 587 (784)
+.-..+++.|..+|.+.|++++|...+++..+ . |. .|.+. -++.+...|+..+++++|..+++...+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11245677888899999999999988887643 1 21 22332 3667777888899999999998876542
Q ss_pred -CCC-CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 588 -KIP-RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ----R-IDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 588 -~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
|.. +....+++.|...|.+.|++++|.++|++..... + ..+ .-..++.|...|.+.++.++|.++|.+-..-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 211 1334679999999999999999999998876532 1 122 2456889999999999999999999875542
Q ss_pred ----C-CCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 660 ----G-HLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 660 ----g-~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
| -.|+ ..+|..|...|...| ++++|.++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g-~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQG-NYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcc-cHHHHHHHHHHHHH
Confidence 2 1233 568889999999999 99999999988764
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.87 E-value=4.2e-06 Score=90.05 Aligned_cols=261 Identities=14% Similarity=0.107 Sum_probs=189.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN 537 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 537 (784)
...+...|++++|++.+..-... +......+......+.+.|+.++|..+|..+.+.+. .|..-|..+..+..-..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhc
Confidence 34568899999999999875544 344445566667888899999999999999999863 35666666766663332
Q ss_pred -----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 538 -----RPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDT-PGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 538 -----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
..+....+++++...- |.......+.-.+.....+ ..+..++..+...|+ |+ +|+.+-..|....+..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-Ps---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-PS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-ch---HHHHHHHHHcChhHHH
Confidence 5677888999887653 4433332222222221223 245566777777886 33 7888888888777777
Q ss_pred HHHHHHHHHHhcC----C---------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 003946 612 LMAKLLQEVKEGQ----R---------IDCGVH--DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGY 675 (784)
Q Consensus 612 ~a~~~~~~~~~~~----~---------~~p~~~--~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~ 675 (784)
-..+++....... . -.|... ++.-+...|-..|++++|++++++.++. .|+ +..|..-...+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 7777776654321 1 124443 4566788899999999999999999985 676 56677778889
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKM 736 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 736 (784)
.+.| ++++|.+.++....... -|..+-+-.+..+.++|++++|.+++......+.
T Consensus 239 Kh~G-~~~~Aa~~~~~Ar~LD~-----~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 239 KHAG-DLKEAAEAMDEARELDL-----ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHCC-CHHHHHHHHHHHHhCCh-----hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999 99999999999987321 2677777888999999999999999999987765
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=2.6e-07 Score=88.17 Aligned_cols=229 Identities=9% Similarity=0.060 Sum_probs=148.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI 534 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 534 (784)
+.|-.+|.+.|.+.+|.+.|..-.+. .|-..||..|-++|.+..++..|..+|.+-.+. ++-|+.....+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 56778888888888888888887765 355666777888888888888888888887765 3334444455667777
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHH
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMA 614 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 614 (784)
..++.++|.++++...+.. ..++....++...|.-.++++-|+.+++++.+.|+.. +..
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--peL------------------ 360 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--PEL------------------ 360 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC--hHH------------------
Confidence 7788888888888887653 3456667777777777888888888888888887532 334
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 615 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
|+.+.-+|.-.+++|-++--|++....--.|+ ...|..+-......| ++..|.+.|+-.
T Consensus 361 ------------------f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG-D~nlA~rcfrla 421 (478)
T KOG1129|consen 361 ------------------FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIG-DFNLAKRCFRLA 421 (478)
T ss_pred ------------------HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEecc-chHHHHHHHHHH
Confidence 44444444445555555555555444322232 233444444444455 666666666655
Q ss_pred HhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 693 KSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 693 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
... -.-+.+.+|.|.-.-.+.|++++|..++.....
T Consensus 422 L~~-----d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 422 LTS-----DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hcc-----CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 431 112345566666666666666666666666554
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=0.00018 Score=77.37 Aligned_cols=129 Identities=9% Similarity=-0.020 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003946 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFF 640 (784)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 640 (784)
|......+.+.++.++|...+.+..... |..+..|......+...|..++|.+.|......++- ++....++..++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~--hv~s~~Ala~~l 728 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD--HVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC--CcHHHHHHHHHH
Confidence 4444455556666666666665554432 444555555555556666666666666665553321 233455666666
Q ss_pred HhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 003946 641 CKKRLMQDAEK--ALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSF 695 (784)
Q Consensus 641 ~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~ 695 (784)
.+.|+..-|.. ++.++.+.+ .-+...|..+...+.+.| +.+.|.++|....+.
T Consensus 729 le~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~G-d~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLG-DSKQAAECFQAALQL 783 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc-chHHHHHHHHHHHhh
Confidence 66666555555 666666542 224556666666666666 666666666655543
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.79 E-value=8e-06 Score=83.17 Aligned_cols=232 Identities=11% Similarity=-0.054 Sum_probs=144.3
Q ss_pred CHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 003946 503 WLDQAHDLLDEMHLAG-VRAS--SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALH 579 (784)
Q Consensus 503 ~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 579 (784)
..+.+..-+.++.... ..|+ ...|..+...|...|+.++|...|++..+.. ..+...|+.+-..+...|++++|+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555565555432 1222 3456666667777777777777777776653 2356677777777777788888888
Q ss_pred HHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 580 LFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 580 ~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
.|++..+.. |....++..+...+...|++++|.+.|+...+.+ |+..........+...++.++|.+.|++....
T Consensus 120 ~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 777777654 6666777777777777888888888887777654 33211122222344567899999999776543
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003946 660 GHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS-TSMNF-DEELLDSVLYTFVRGGFFARANEVVAMMEEGKMF 737 (784)
Q Consensus 660 g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~-~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 737 (784)
..|+...+ . ......| +.+.+ ..++.+.+.... ..+.| ....|..+...+.+.|++++|...|++..+.+ .
T Consensus 195 -~~~~~~~~-~--~~~~~lg-~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~ 267 (296)
T PRK11189 195 -LDKEQWGW-N--IVEFYLG-KISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-V 267 (296)
T ss_pred -CCccccHH-H--HHHHHcc-CCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 23332222 1 2223345 55554 355555431100 01111 24578889999999999999999999998753 3
Q ss_pred CCHHHHHHHH
Q 003946 738 IDKYKYRTLF 747 (784)
Q Consensus 738 pd~~~~~~li 747 (784)
||.+-+...+
T Consensus 268 ~~~~e~~~~~ 277 (296)
T PRK11189 268 YNFVEHRYAL 277 (296)
T ss_pred chHHHHHHHH
Confidence 5766666655
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.77 E-value=8.7e-06 Score=74.67 Aligned_cols=206 Identities=13% Similarity=-0.008 Sum_probs=136.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
-|.-+|...|+...|..-+++.++.. +-+..+|..+...|.+.|+.+.|.+-|++..... |.+....|.....+|..
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhC
Confidence 44556666666666666666666553 1234466666666666666666666666666543 55556666666666667
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHH
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~ 686 (784)
|++++|...|+.........-...+|..+.-+..+.|+.+.|.+.|++-++. .| ...+...+.......| ++-.|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~-~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAG-DYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcc-cchHHH
Confidence 7777777777666654332223456777777778888888888888888775 34 3456667777777778 888888
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003946 687 ELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTL 746 (784)
Q Consensus 687 ~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 746 (784)
.+++.... +..++.......|..-.+.|+-+.+.+.=..+... .|...-|-.+
T Consensus 194 ~~~~~~~~-----~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQ-----RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHHHHh-----cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 88887776 23377777777788888888877777766666653 5666555544
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=0.0001 Score=73.16 Aligned_cols=198 Identities=11% Similarity=0.030 Sum_probs=131.6
Q ss_pred HHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003946 453 IYIKLVKAF--LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS-SSVYASL 529 (784)
Q Consensus 453 ~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l 529 (784)
+....|.++ +..++-..|..++--+..... ++-+......+.+.+...|+.++|...|+...-.+ |+ +......
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~-lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Y 272 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTT-LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLY 272 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhcc-CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHH
Confidence 333444444 444555556665555544432 46666777888888899999999999999877653 22 2222223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
.-.+.+.|+++....+...+.... .-....|-.-........+.+.|+.+-++.++.+ +.+...|-.-...+...++
T Consensus 273 a~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccc
Confidence 334567788888888888776431 1233344444444556678888888888877755 5556677777777888888
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
.++|.-.|.......+ -+...|.-|+..|...|+..||.-+-++..+
T Consensus 350 ~~~A~IaFR~Aq~Lap--~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAP--YRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred hHHHHHHHHHHHhcch--hhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 8888888888776432 2677888889988888888888776655443
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.74 E-value=0.00042 Score=73.18 Aligned_cols=398 Identities=16% Similarity=0.122 Sum_probs=235.5
Q ss_pred HHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 003946 256 FNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSC 335 (784)
Q Consensus 256 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~ 335 (784)
|-.++..| ..+++..++++.+.+.+ +.+--..|.....-.+...|+.++|....+.-.+.+..+.. .|..+.-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v----CwHv~gl~ 84 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV----CWHVLGLL 84 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch----hHHHHHHH
Confidence 44444444 55778888888887776 22222234333333456779999999988887776555554 79999888
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhh
Q 003946 336 HLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKF 415 (784)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (784)
+-...++++|+..|......+.-....+.++..+...
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q------------------------------------------- 121 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ------------------------------------------- 121 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------------------------------------------
Confidence 8888999999999988776431000000000000000
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 003946 416 VALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHV 494 (784)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 494 (784)
.+.+....+.....++ ..| ....|..+..++--.|+...|..++++..+... ..|+...|...
T Consensus 122 ----------mRd~~~~~~tr~~LLq-----l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-~~~s~~~~e~s 185 (700)
T KOG1156|consen 122 ----------MRDYEGYLETRNQLLQ-----LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-TSPSKEDYEHS 185 (700)
T ss_pred ----------HHhhhhHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCHHHHHHH
Confidence 0000001111111111 233 447899999999999999999999999887652 35777766655
Q ss_pred HHHHH------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 495 ITLCI------SLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568 (784)
Q Consensus 495 i~~~~------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 568 (784)
..-.- +.|.++.|.+.+..-... +.-....-..-...+.+.+++++|..++..+... .||..-|.-.+..+
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 54433 457777777766655443 2222333345667788999999999999999877 57777766655544
Q ss_pred H-HcCChhHHH-HHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 003946 569 I-VQKDTPGAL-HLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLM 646 (784)
Q Consensus 569 ~-~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 646 (784)
. +--+.-+++ .+|....+.-. -....-..=+.......-.+...+++..+.+.+ + | .++..+...|-.-...
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~y~--r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg-~-p--~vf~dl~SLyk~p~k~ 336 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEKYP--RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG-V-P--SVFKDLRSLYKDPEKV 336 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCc--ccccchhccHHHhCcchhHHHHHHHHHHHhhcC-C-C--chhhhhHHHHhchhHh
Confidence 4 344444444 67766655421 100000111111111112223333444444433 2 2 2366666666544433
Q ss_pred HHHHHHHHHHHhC----C----------CCCCHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHH
Q 003946 647 QDAEKALKRMRSL----G----------HLPNAQTF--HSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLD 709 (784)
Q Consensus 647 ~~A~~~~~~m~~~----g----------~~p~~~~~--~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~ 709 (784)
+-..++.-.+... | -.|....| ..+...+-+.| +++.|..+++.... ..|+ ++.|-
T Consensus 337 ~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g-~~~~A~~yId~AId------HTPTliEly~ 409 (700)
T KOG1156|consen 337 AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLG-DYEVALEYIDLAID------HTPTLIELYL 409 (700)
T ss_pred HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHhc------cCchHHHHHH
Confidence 3223333333221 1 14554444 45667788889 99999999999876 3444 45677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 710 SVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 710 ~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
+=.+.+..+|.+++|..++++..+.
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhc
Confidence 7779999999999999999999875
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=5.3e-05 Score=80.14 Aligned_cols=275 Identities=9% Similarity=-0.038 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH-VITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
...|..+...+...|+.+.+...+.+..+... ..++...... ....+...|++++|..+++...+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 35666677777778888887777777665442 1333322221 2234457899999999999988763 334445442
Q ss_pred HHHHHH----cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 530 LKAYIE----ANRPREVTALLRDARSAGIQLDA-SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 530 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
...+.. .+..+.+.+.+.. .....|+. .....+...+...|++++|...+++..+.. |.+...+..+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHH
Confidence 223333 3455555555544 11223443 344556677889999999999999999876 77777889999999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHHc
Q 003946 605 AQNHEAGLMAKLLQEVKEGQRIDCGV--HDWNNVIHFFCKKRLMQDAEKALKRMRSLGH-LPNAQTF-H--SMVTGYAAI 678 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~p~~--~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~-~--~ll~a~~~~ 678 (784)
...|++++|..+++......+..|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 99999999999999888765433443 3466788899999999999999999864322 1222211 1 233334444
Q ss_pred CCCHHHHHHHHHHHHhcccCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 679 GGKYTEVTELWGEMKSFASST-SMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 679 g~~~~~a~~~~~~m~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
| ..+.+.+. +.+....... ..............++...|+.++|.++++.+...
T Consensus 239 g-~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 239 G-HVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred C-CCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4 43333332 2222210001 00112223336778888999999999999998763
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.72 E-value=1.5e-05 Score=81.21 Aligned_cols=62 Identities=15% Similarity=-0.059 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL 516 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 516 (784)
..|+.+...+...|++++|...|++..+.. +-+..+|..+..++...|++++|.+.|+...+
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444444444444444444332 22233334444444444444444444444443
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=0.00011 Score=77.79 Aligned_cols=266 Identities=14% Similarity=-0.008 Sum_probs=132.8
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS----LGWLDQAHDLLDEMHLAGVRAS-SSVYASLLKAYI 534 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~ 534 (784)
.+...|++++|.+.+++..... +.|...+.. ...+.. .+..+.+.+.+.. .....|+ ......+...+.
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY---PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 3445666667766666665543 333333331 112222 2333334333333 1111222 333344555666
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcH--HHHHHHHHHHHhcCcHHH
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGH--QEFEMLVKGCAQNHEAGL 612 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~~ll~~~~~~~~~~~ 612 (784)
..|++++|...+++..+.. +.+...+..+...+...|++++|...+++.......++.. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 6677777777777766553 2234555666666666777777777766665532111111 123345566666777777
Q ss_pred HHHHHHHHHhcCCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHHcCCCHHHH
Q 003946 613 MAKLLQEVKEGQRIDCGVHDW-N--NVIHFFCKKRLMQDAEKA---LKRMRSLGH-LPNAQTFHSMVTGYAAIGGKYTEV 685 (784)
Q Consensus 613 a~~~~~~~~~~~~~~p~~~~y-~--~li~~~~~~g~~~~A~~~---~~~m~~~g~-~p~~~~~~~ll~a~~~~g~~~~~a 685 (784)
|..+++......+..+..... + .++.-+...|..+.+.+. ...-....- ............++...| +.+.|
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~a 283 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG-DKDAL 283 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC-CHHHH
Confidence 777777664332211111111 1 233333444432222222 111111100 111122224566677778 89999
Q ss_pred HHHHHHHHhcccC---CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 686 TELWGEMKSFASS---TSMN-FDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 686 ~~~~~~m~~~~~~---~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..+++.+...... .+.. ..........-++...|++++|.+.+.+...
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999888764332 1111 1222333444556688999999999888764
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.64 E-value=0.00015 Score=79.87 Aligned_cols=584 Identities=10% Similarity=-0.039 Sum_probs=325.4
Q ss_pred chhhHHHHHHHhcccCCCCCc-hhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCcc
Q 003946 105 RYGDAWKLYEQHMQMDGFPRK-TLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVP 183 (784)
Q Consensus 105 ~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 183 (784)
+...|+..|=+..+.. |+. ..|..|-..|.. ..+..+|...|...++. .+ .+....-+....|++...++.
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd---~~Dm~RA~kCf~KAFeL-Da--tdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRD---SDDMKRAKKCFDKAFEL-DA--TDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHH---HHHHHHHHHHHHHHhcC-Cc--hhhhhHHHHHHHhhccccHHH
Confidence 3666777776666644 222 345555555643 45777788888887775 11 234445568889999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHh
Q 003946 184 ASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGC 263 (784)
Q Consensus 184 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~ 263 (784)
|..+.-...+.. +.-...+|..-.+..-. .++...+|..-|+ .-- .--+.|...|..+..+|
T Consensus 545 a~~I~l~~~qka-~a~~~k~nW~~rG~yyL------ea~n~h~aV~~fQ--sAL---------R~dPkD~n~W~gLGeAY 606 (1238)
T KOG1127|consen 545 AFEICLRAAQKA-PAFACKENWVQRGPYYL------EAHNLHGAVCEFQ--SAL---------RTDPKDYNLWLGLGEAY 606 (1238)
T ss_pred HHHHHHHHhhhc-hHHHHHhhhhhcccccc------CccchhhHHHHHH--HHh---------cCCchhHHHHHHHHHHH
Confidence 998844333321 11234455555443322 1356666666665 221 11255777899999999
Q ss_pred hhcCChhHHHHHHHhhhhCCCCCChhHHHH--HHHHHHhcCCHHHHHHHHHHHHhhcCCChh---hHHHHHHHHHHHHHh
Q 003946 264 LLFETTRKAEQLLDIMPRIGVKADSNLLII--MAHIYERNGRREELRKLQRHIDEAVNLSDI---QFRQFYNCLLSCHLK 338 (784)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~--li~~~~~~g~~~~A~~l~~~~~~~~~~~~~---~~~~~~~~li~~~~~ 338 (784)
...|++..|+++|..... +.|+. +|.. ..-.-+..|.+.+|...+..+......... ....++-.+...+.-
T Consensus 607 ~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~ 683 (1238)
T KOG1127|consen 607 PESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAI 683 (1238)
T ss_pred HhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999988876 34654 3332 223356778999999888876654211111 111123333334444
Q ss_pred cCChhHHHHHHHHHHHHH-----------HHHHHHHHHhchhhhhhccCCCCCCC---cccc-CCCCccccccccccccc
Q 003946 339 FGDLNSASKMVLEMLQRA-----------KEARNSLAAAMLPFNAVGVNNRTPSE---QNVN-CTNSVDLENSGIIENHI 403 (784)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~ 403 (784)
.|-..+|.+.|++-.+.- ...|-..-.++..+-.+.++ ..... ++.. -........... ..
T Consensus 684 ~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~---l~ 759 (1238)
T KOG1127|consen 684 TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDL---LF 759 (1238)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc-chHHHHHHHHHHHHHhcccCcchhH---HH
Confidence 555556666655544432 23455555555555555433 11000 0000 000000000000 00
Q ss_pred cchhhhhhh-------hhhHHHHHHHHHHHHHHhhhHHHHHHHHhhh---cCCcCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 404 LSYEDFTKD-------RKFVALEAEVKRVLQTLLGMLQKQVELITTE---HGILQPTEKIYIKLVKAFLEAGKTKELTHF 473 (784)
Q Consensus 404 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 473 (784)
+.+.-+..+ ......+...-..+-...+.++..+..+... -....-+..+||.|--. ...|.+.-|...
T Consensus 760 Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHC 838 (1238)
T KOG1127|consen 760 LGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHC 838 (1238)
T ss_pred HHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhh
Confidence 000000000 0011111111111111111111111111110 01123355778776555 666888888888
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH--H-
Q 003946 474 LIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDA--R- 550 (784)
Q Consensus 474 ~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~- 550 (784)
|-+-.... +-...+|..+--.|.+..+++.|...|....... +.|...|-......-..|+.-++..+|..- .
T Consensus 839 fIks~~se---p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 839 FIKSRFSE---PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred hhhhhhcc---ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 88776665 5667788888888999999999999999988764 346777777666667788888888888762 1
Q ss_pred -HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc--------CCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003946 551 -SAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES--------KIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 551 -~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 621 (784)
..|-.|+..-|-....-...+|+.++-+...+.+... +..|+...+|.+......+.+.+..|.++..+..
T Consensus 915 ~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 915 SKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred ccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2333566666666666666777766655444433221 1237778889999888888888888877766543
Q ss_pred hcCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 003946 622 EGQRIDCGVHDWNNVIH----FFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFAS 697 (784)
Q Consensus 622 ~~~~~~p~~~~y~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~ 697 (784)
.--..+-+...||.... .++..|.++.|..-+..... .-|...-..-+..+. .+ +++++.+.|++......
T Consensus 995 glLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~lFf-kn-df~~sl~~fe~aLsis~ 1069 (1238)
T KOG1127|consen 995 GLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTLFF-KN-DFFSSLEFFEQALSISN 1069 (1238)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHHHH-Hh-HHHHHHHHHHHHhhhcc
Confidence 22112235556775433 33445666655544432221 123333333333333 36 89999999999876421
Q ss_pred CCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 698 STSMNFD-EELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 698 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
-.-+ ......+......++.-+.|...+-+....
T Consensus 1070 ---se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1070 ---SESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred ---cccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 2223 233455555666777778888888777754
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.64 E-value=0.00016 Score=76.58 Aligned_cols=224 Identities=14% Similarity=0.155 Sum_probs=133.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN 537 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 537 (784)
|.+......+.+|+.+++.++.+. ..+. -|.-+...|+..|+++.|.++|-+. ..++--|.+|.+.|
T Consensus 739 ieaai~akew~kai~ildniqdqk---~~s~-yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK---TASG-YYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc---cccc-cchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 444456667777888777776554 1222 2666777788888888888777542 23456677888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHH
Q 003946 538 RPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLL 617 (784)
Q Consensus 538 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 617 (784)
++++|.++-++.. |.......|.+-..-+-++|++.+|.+++-.+.. |+ ..+..|.+.|..+...++.
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~------~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD------KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch------HHHHHHHhhCcchHHHHHH
Confidence 8888877765543 2233445565556666677777777777654321 22 2356677777777777776
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 003946 618 QEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFAS 697 (784)
Q Consensus 618 ~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~ 697 (784)
++-.... -..|...+..-|-..|++..|++-|-+.- -|.+-++.|...+ .|++|.++.+.-
T Consensus 874 ~k~h~d~----l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~-lw~dayriakte----- 934 (1636)
T KOG3616|consen 874 EKHHGDH----LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASE-LWEDAYRIAKTE----- 934 (1636)
T ss_pred HHhChhh----hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhh-hHHHHHHHHhcc-----
Confidence 5543211 12345556667777788888877664433 2455566677777 777776654321
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003946 698 STSMNFDEELLDSVLYTFVRGGFFARANEVVAM 730 (784)
Q Consensus 698 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 730 (784)
| ..|..--...+.+-.-.| +.|.+++++
T Consensus 935 --g-g~n~~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 935 --G-GANAEKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred --c-cccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence 1 123333333333333333 677777765
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.63 E-value=4.7e-05 Score=70.01 Aligned_cols=195 Identities=11% Similarity=0.002 Sum_probs=102.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 494 VITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD 573 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 573 (784)
+--+|...|+...|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+-|++..+.. +-+-...|..-..+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3444555555555555555555543 1234455555555555555555555555544432 1122334444444555555
Q ss_pred hhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003946 574 TPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKAL 653 (784)
Q Consensus 574 ~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 653 (784)
+++|...|++......-+.-..+|..+..+..+.|+.+.|.+.|+...+.++-. ..+.-.+.....+.|++-.|..++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC--ChHHHHHHHHHHhcccchHHHHHH
Confidence 555555555555544333334455555555555555555555555555543321 223455556666666666676666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 654 KRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 654 ~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
++....+. ++....-..|.--...| +.+.+-++=..+.+
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~g-d~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLG-DRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHH
Confidence 66666644 66665555555555566 66666655555554
No 87
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=5.7e-08 Score=61.50 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred CCCCchhhHHHHHHHhhhcCChhHHHHHHHhh
Q 003946 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIM 279 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 279 (784)
|+.||.+|||++|.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666666
No 88
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=7e-08 Score=61.10 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003946 519 VRASSSVYASLLKAYIEANRPREVTALLRDA 549 (784)
Q Consensus 519 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 549 (784)
+.||..+||+||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444433
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.56 E-value=0.0014 Score=70.69 Aligned_cols=443 Identities=12% Similarity=0.005 Sum_probs=214.6
Q ss_pred CChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccch
Q 003946 88 RDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEP 167 (784)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (784)
-++..|..+.-++.+.|++..+.+.|++....- .-....|..+-..+...|. -..|..+++..... .+.+.++.+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~---~s~Av~ll~~~~~~-~~~ps~~s~ 395 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGS---DSKAVNLLRESLKK-SEQPSDISV 395 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhcc---chHHHHHHHhhccc-ccCCCcchH
Confidence 478889999889999999999999999877632 2334455555555554443 23577777776655 444445666
Q ss_pred HHHHHHHHh-hCCCCccHHHHHHHHhh--cCCCC--ChHHHHHHHHHHhhcCC---CchhhHHHHHHhhhhhccCCcCcc
Q 003946 168 LIYLSLGLS-KCGLPVPASTILRKLVA--TEQYP--PVTAWSAILAHMSLTAP---GAYLAAELILEIGYLFQDGRVDPR 239 (784)
Q Consensus 168 ~~~li~~~~-~~g~~~~A~~~~~~m~~--~g~~p--~~~~~~~ll~~~~~~~~---~~~~~~~~~~~a~~~~~~~~m~~~ 239 (784)
+-..-..|. +-+.++++...-.+... .|..- ....|-.+--+|..... ........-.+++..++ +-.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale--~av~- 472 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE--EAVQ- 472 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH--HHHh-
Confidence 655555555 44777777766666554 12111 22233333223322111 11111122233333333 2211
Q ss_pred ccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 003946 240 KKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVN 319 (784)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 319 (784)
+++..|+..-|-++= |+-.++.+.|.+..++..+.+-.-+...|..+.-.+.-.+++.+|..+.+......+
T Consensus 473 ------~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 473 ------FDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred ------cCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 022344444333332 444567777777777776654445566666666666667777777777666554322
Q ss_pred CChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccc
Q 003946 320 LSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGII 399 (784)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (784)
.+.. ....=|..-...++.++|+.....+..- |..........+.
T Consensus 545 ~N~~----l~~~~~~i~~~~~~~e~~l~t~~~~L~~----we~~~~~q~~~~~--------------------------- 589 (799)
T KOG4162|consen 545 DNHV----LMDGKIHIELTFNDREEALDTCIHKLAL----WEAEYGVQQTLDE--------------------------- 589 (799)
T ss_pred hhhh----hchhhhhhhhhcccHHHHHHHHHHHHHH----HHhhhhHhhhhhh---------------------------
Confidence 2211 0111122223356666666666555541 1100000000000
Q ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 400 ENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEK 479 (784)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 479 (784)
.. ....+.+.. .......-.+.++..+..-... +.+.+..-.. +.+
T Consensus 590 -----------------------------g~-~~~lk~~l~-la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-Lp~ 635 (799)
T KOG4162|consen 590 -----------------------------GK-LLRLKAGLH-LALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-LPS 635 (799)
T ss_pred -----------------------------hh-hhhhhcccc-cCcccccccchhhHHHHHHHHh--hhhhcccccc-cCc
Confidence 00 000000000 0000000111222222222211 1111100000 221
Q ss_pred cCCCCC--CCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 480 ENLQVS--HDD------AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 480 ~~~~~~--p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
.. +. |+. ..|......+.+.++.++|...+.+..... +.....|......+...|+.++|.+.|.....
T Consensus 636 s~--~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 636 ST--VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cc--ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 11 12 221 123344455556666666665555555442 22445555555556666666777666666654
Q ss_pred cCCCC-CHHHHHHHHHHHHHcCChhHHHH--HHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 552 AGIQL-DASCYEALLQSKIVQKDTPGALH--LFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 552 ~g~~p-~~~t~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
. .| ++.+..++...+.+.|+..-|.. ++.++.+.+ |.++..|-.+...+-+.|+.+.|-+.|+...+
T Consensus 713 l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 713 L--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred c--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 4 33 33455666666666666655555 666666654 66666666666666666766666666665544
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.54 E-value=0.00062 Score=81.95 Aligned_cols=275 Identities=12% Similarity=0.012 Sum_probs=180.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHH
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDD----AALGHVITLCISLGWLDQAHDLLDEMHLAGV---RA--SSSVYAS 528 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~--~~~~~~~ 528 (784)
-..+...|++++|...+++...... ..+. ...+.+...+...|++++|...+.+.....- .+ -..+...
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELP--LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 3455678999999999998765321 1221 2345556667789999999999988774311 11 1234556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC--C-CCCcHHHHH
Q 003946 529 LLKAYIEANRPREVTALLRDARS----AGIQ--L-DASCYEALLQSKIVQKDTPGALHLFKEMKESK--I-PRSGHQEFE 598 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~~~~~~~~~ 598 (784)
+...+...|++++|...+++... .|.. + ....+..+...+...|++++|...+.+..... . .......+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 67778889999999999887654 2211 1 22344555566777899999999988875531 1 112233455
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHH
Q 003946 599 MLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDW-----NNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA---QTFHS 670 (784)
Q Consensus 599 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ 670 (784)
.+.......|+.+.|...++..............+ ...+..+...|+.+.|.+.+............ ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 56667888999999999988775421111111111 11234556689999999998776542211111 11345
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003946 671 MVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRGGFFARANEVVAMMEEGK 735 (784)
Q Consensus 671 ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 735 (784)
+..++...| ++++|...+++........+..++ ..+...+..+|.+.|+.++|.+.+.+..+..
T Consensus 697 ~a~~~~~~g-~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLG-QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 666788889 999999999988775444444433 3457778889999999999999999998753
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=0.00026 Score=76.21 Aligned_cols=361 Identities=12% Similarity=0.078 Sum_probs=194.7
Q ss_pred ccchHHHHHH--HHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccc
Q 003946 164 EKEPLIYLSL--GLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKK 241 (784)
Q Consensus 164 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~ 241 (784)
++.+--.+++ .|.--|+.+.|.+-.+.+. +...|..|-+.+.+. .+++-|.-.+. .|..++.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT--------~RLDVAkVClG--hm~~aRg 788 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKT--------RRLDVAKVCLG--HMKNARG 788 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhh--------ccccHHHHhhh--hhhhhhh
Confidence 4444444544 4667788888887777765 556787777777765 33333333333 3322111
Q ss_pred ccccccC-CCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 003946 242 CNAPLIA-MKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNL 320 (784)
Q Consensus 242 ~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 320 (784)
....-.. -.|+ .+=.-+.......|..++|+.+|++-++.. .|=..|-..|.+++|.++-+.-.+-...
T Consensus 789 aRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr 858 (1416)
T KOG3617|consen 789 ARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLR 858 (1416)
T ss_pred HHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehh
Confidence 0000000 1222 111112222347799999999999887643 3334578889999998886553322222
Q ss_pred ChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccc
Q 003946 321 SDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIE 400 (784)
Q Consensus 321 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (784)
+ +|-.-..-+-..++.+.|++.|++-...... .+..+.+
T Consensus 859 ~------Tyy~yA~~Lear~Di~~AleyyEK~~~hafe----------v~rmL~e------------------------- 897 (1416)
T KOG3617|consen 859 N------TYYNYAKYLEARRDIEAALEYYEKAGVHAFE----------VFRMLKE------------------------- 897 (1416)
T ss_pred h------hHHHHHHHHHhhccHHHHHHHHHhcCChHHH----------HHHHHHh-------------------------
Confidence 2 4666666666778899999988765432110 0000000
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 401 NHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKE 480 (784)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 480 (784)
+ ....+..+. -..|...|.-....+-..|+.+.|+.+|...+.
T Consensus 898 -----~------------p~~~e~Yv~-------------------~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 898 -----Y------------PKQIEQYVR-------------------RKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred -----C------------hHHHHHHHH-------------------hccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 0 000001111 133445555555566678899999998887642
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--C----
Q 003946 481 NLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAG--I---- 554 (784)
Q Consensus 481 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---- 554 (784)
|-++++..|-.|+.++|-++-++ .| |....-.|...|-..|++.+|..+|-+..... +
T Consensus 941 ----------~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcK 1004 (1416)
T KOG3617|consen 941 ----------YFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCK 1004 (1416)
T ss_pred ----------hhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777888999998877654 22 56667778889999999999988887764210 0
Q ss_pred --CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHH---------HHHHhc
Q 003946 555 --QLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLL---------QEVKEG 623 (784)
Q Consensus 555 --~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~---------~~~~~~ 623 (784)
..+...||.-+ .....+.-.|-.+|++. |. -+.-.+..|.+.|.+..|+++- +-+.+.
T Consensus 1005 End~~d~L~nlal--~s~~~d~v~aArYyEe~---g~------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1005 ENDMKDRLANLAL--MSGGSDLVSAARYYEEL---GG------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred hcCHHHHHHHHHh--hcCchhHHHHHHHHHHc---ch------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 01111122111 11111233344444432 11 2233344566777766666552 222222
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 624 QRIDCGVHDWNNVIHFFCKKRLMQDAEKALKR 655 (784)
Q Consensus 624 ~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 655 (784)
-....|....+.-.+-++...++++|.+++-.
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11223445555555556666666666665543
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=4.2e-05 Score=72.52 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=28.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003946 500 SLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQ 555 (784)
Q Consensus 500 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 555 (784)
+.|+++.|.+-|+...+-+---....||.-+..| +.|+++.|++...++.++|++
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 5566666666665555432222334555444333 345556666666666655543
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.0023 Score=67.01 Aligned_cols=214 Identities=17% Similarity=0.156 Sum_probs=112.7
Q ss_pred CCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHH--HHHHHHhccChhhHHHHHHHHHHHHHhcccccCc
Q 003946 87 ARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNK--ILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLE 164 (784)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~--ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 164 (784)
+.++..+..-+-++...+++++|+.+.+.-.. ..+++. +=++||.. +....++|+..+...-. .+
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y-rlnk~Dealk~~~~~~~------~~ 109 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY-RLNKLDEALKTLKGLDR------LD 109 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH-HcccHHHHHHHHhcccc------cc
Confidence 44556666666667777777777766654221 111111 34555543 24455555555552111 12
Q ss_pred cchHHHHHHHHhhCCCCccHHHHHHHHhhcCCC-CChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccc
Q 003946 165 KEPLIYLSLGLSKCGLPVPASTILRKLVATEQY-PPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCN 243 (784)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~ 243 (784)
+.....-...+-+.|++++|..+++.+.+.+.. -|..--..++.+-. ...+. +.+ ...
T Consensus 110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------------~l~~~-~~q--~v~------ 168 (652)
T KOG2376|consen 110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------------ALQVQ-LLQ--SVP------ 168 (652)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH------------hhhHH-HHH--hcc------
Confidence 223334455667788888888888888655321 11111122222111 11111 122 111
Q ss_pred ccccCCCCc---hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCC-------------CCCh-hHHHHHHHHHHhcCCHHH
Q 003946 244 APLIAMKPN---TNTFNIALAGCLLFETTRKAEQLLDIMPRIGV-------------KADS-NLLIIMAHIYERNGRREE 306 (784)
Q Consensus 244 ~~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~-------------~pd~-~~~~~li~~~~~~g~~~~ 306 (784)
..|+ ...||+. ..++..|++.+|+++++...+.+. .-+. .....|.-.+-..|+.++
T Consensus 169 -----~v~e~syel~yN~A-c~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 169 -----EVPEDSYELLYNTA-CILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred -----CCCcchHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1231 1234432 245578999999999988732211 1111 233456666788899999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcC
Q 003946 307 LRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 307 A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (784)
|..++..+.+.+.++.....+.-|.|+.+-....
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQN 276 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHHhcchhhhccccc
Confidence 9999999988876666544445566665444333
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.51 E-value=0.0012 Score=70.37 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
|..+..-|+..|+++.|.++|.+.. . ++-.|..|.+.|+++.|.++-.+.. |....+..|-+-..-+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~---------~--~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD---------L--FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDL 834 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc---------h--hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhH
Confidence 4455566777777777777765421 1 3445667777777777776655543 2233455555555566
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHH
Q 003946 534 IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLM 613 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 613 (784)
-+.|++.+|++++-.+. .||. -|..|-+.|..+..+++.++-.-. .-+.|..-+..-+...|++..|
T Consensus 835 dehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD----HLHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred HhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh----hhhHHHHHHHHHHHhccChhHH
Confidence 66777777777665554 4543 345666667666666665543211 1133445555566666677676
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003946 614 AKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALK 654 (784)
Q Consensus 614 ~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 654 (784)
+.-|-+... |.+-+.+|-..+.+++|.++-+
T Consensus 902 e~~flea~d----------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 902 EEHFLEAGD----------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHh
Confidence 666544432 5566666666666666665543
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.0026 Score=70.49 Aligned_cols=450 Identities=12% Similarity=0.132 Sum_probs=279.1
Q ss_pred HHHHHHhccchhhHHHHHHHhccc----CCCCCchhHHHHHHHHHhccChhhHHHHH--------HHHHHHHHhcccccC
Q 003946 96 EIENAINEHRYGDAWKLYEQHMQM----DGFPRKTLVNKILTSFVESLDSKWLEKAY--------GLVEQAFEEGKQILL 163 (784)
Q Consensus 96 li~~~~~~~~~~~A~~l~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~~a~--------~~~~~~~~~~~~~~~ 163 (784)
.+.-||..+++.-|.-.|++-.-. .+......|...-+.+.+..+.+.+.+++ .++++.+...-+...
T Consensus 903 vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~ 982 (1666)
T KOG0985|consen 903 VVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQ 982 (1666)
T ss_pred HHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccC
Confidence 344555555555555444432110 01112223333333334444556666655 456666665555667
Q ss_pred ccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHH-----HHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCc
Q 003946 164 EKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTA-----WSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDP 238 (784)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~ 238 (784)
+|+..+..+.++.-++-+.+-.++++++.- .|++++ -|.||-.-.+ .+.....+..+ +++.
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL---~~S~Fse~~nLQnLLiLtAik---------ad~trVm~YI~--rLdn 1048 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVL---DNSVFSENRNLQNLLILTAIK---------ADRTRVMEYIN--RLDN 1048 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhc---CCcccccchhhhhhHHHHHhh---------cChHHHHHHHH--Hhcc
Confidence 888888889999999999999999998873 345554 3334332222 12223333333 3321
Q ss_pred cccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 003946 239 RKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAV 318 (784)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 318 (784)
=-.|++ -..+...+-+++|..+|+..- .+....+.||. ..+.++.|.+.-+...
T Consensus 1049 ---------yDa~~i------a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n--- 1102 (1666)
T KOG0985|consen 1049 ---------YDAPDI------AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN--- 1102 (1666)
T ss_pred ---------CCchhH------HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC---
Confidence 013332 234456677889988887643 34455555543 3466777766544432
Q ss_pred CCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccc
Q 003946 319 NLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGI 398 (784)
Q Consensus 319 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (784)
.|. +|..+..+-.+.|.+.+|++-|-+
T Consensus 1103 ~p~------vWsqlakAQL~~~~v~dAieSyik----------------------------------------------- 1129 (1666)
T KOG0985|consen 1103 EPA------VWSQLAKAQLQGGLVKDAIESYIK----------------------------------------------- 1129 (1666)
T ss_pred ChH------HHHHHHHHHHhcCchHHHHHHHHh-----------------------------------------------
Confidence 232 699998888888888888775421
Q ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 399 IENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAE 478 (784)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 478 (784)
.-|+..|.-+|....+.|.+++..+.+...+
T Consensus 1130 -------------------------------------------------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1130 -------------------------------------------------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred -------------------------------------------------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3355678899999999999999988887777
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 003946 479 KENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDA 558 (784)
Q Consensus 479 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 558 (784)
+.. -.|... ..||-+|++.+++.+-+++. ..||......+-+-|...|.++.|.-+|...
T Consensus 1161 kk~--~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------- 1220 (1666)
T KOG0985|consen 1161 KKV--REPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------- 1220 (1666)
T ss_pred Hhh--cCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------
Confidence 666 255553 46899999999887765554 2478877788888888889998888777644
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
.-|.-|...+...|+++.|.+.-++ .++..||.-+-.+|...+.+..|.- ...+ +.....-..-+|.
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRK-------Ans~ktWK~VcfaCvd~~EFrlAQi-----CGL~-iivhadeLeeli~ 1287 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARK-------ANSTKTWKEVCFACVDKEEFRLAQI-----CGLN-IIVHADELEELIE 1287 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh-------ccchhHHHHHHHHHhchhhhhHHHh-----cCce-EEEehHhHHHHHH
Confidence 4477777788888888888776654 3345688888888888776655532 1111 1112223567888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCC------CCHHHHHHHH
Q 003946 639 FFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMN------FDEELLDSVL 712 (784)
Q Consensus 639 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~------p~~~~~~~li 712 (784)
-|-..|-+++-+.+++.-+.. -+.....|+.|.--|++-. .++..+.++-.-.+ -+++ -....|+-++
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTELaiLYskyk--p~km~EHl~LFwsR---vNipKviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGLGL-ERAHMGMFTELAILYSKYK--PEKMMEHLKLFWSR---VNIPKVIRAAEQAHLWSELV 1361 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHH
Confidence 888899998888888765432 1234556777666666643 55544444333221 1111 1244677888
Q ss_pred HHHHhcCChHHHHH
Q 003946 713 YTFVRGGFFARANE 726 (784)
Q Consensus 713 ~~~~~~g~~~~A~~ 726 (784)
..|.+-..++.|.-
T Consensus 1362 fLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1362 FLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHhhhhhhHHHH
Confidence 88887777776643
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=8.1e-05 Score=70.64 Aligned_cols=198 Identities=13% Similarity=0.041 Sum_probs=127.4
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 255 TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 255 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
-+++++.-+.+..++..|++++..-.+.. +.+....+.|..+|-...++..|...++++... .|....+ ----..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-~P~~~qY---rlY~AQ 86 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-HPELEQY---RLYQAQ 86 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHH---HHHHHH
Confidence 36677777888999999999998877654 226677888888999999999999999998874 3333321 112235
Q ss_pred HHHhcCChhHHHHHHHHHHHHHH-HHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhh
Q 003946 335 CHLKFGDLNSASKMVLEMLQRAK-EARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDR 413 (784)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (784)
.+.+.+.+..|+++...|.+..- ....--+.+...... .. +
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse-----~D-----------------------------l---- 128 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE-----GD-----------------------------L---- 128 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-----cc-----------------------------C----
Confidence 56778899999999988877321 000000000000000 00 0
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 003946 414 KFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH 493 (784)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 493 (784)
...+..++.. . -.-+..+.+......-+.|+++.|.+-|....+-++ ..|- ..|+.
T Consensus 129 ------~g~rsLveQl---------------p-~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG-yqpl-lAYni 184 (459)
T KOG4340|consen 129 ------PGSRSLVEQL---------------P-SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG-YQPL-LAYNL 184 (459)
T ss_pred ------cchHHHHHhc---------------c-CCCccchhccchheeeccccHHHHHHHHHHHHhhcC-CCch-hHHHH
Confidence 0001111100 0 012344555555556789999999999999887664 4554 45886
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003946 494 VITLCISLGWLDQAHDLLDEMHLAGVR 520 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~~g~~ 520 (784)
.+..| +.|++..|.+...++.++|++
T Consensus 185 ALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 185 ALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 66555 568999999999999999975
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.49 E-value=3.6e-06 Score=84.37 Aligned_cols=249 Identities=12% Similarity=0.044 Sum_probs=131.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003946 461 FLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPR 540 (784)
Q Consensus 461 ~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 540 (784)
+--.|++..++.-.+ ..... -..+..+..-+.+++...|+++.+ ..++.... .|.......+...+....+-+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~--~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFS--PENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTST--CHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHhhhHHHHHHHhh-ccCCC--chhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 334566766665444 22111 022233344455777777776543 33443333 555555554444443333344
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003946 541 EVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE 619 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 619 (784)
.+..-+++.......+ +..........+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444333332222221 2222222223344567777777776542 2345666677777777777777777777
Q ss_pred HHhcCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 003946 620 VKEGQRIDCGVH---DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFA 696 (784)
Q Consensus 620 ~~~~~~~~p~~~---~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~ 696 (784)
|.+.+ .|.. ...+.+..+...+.+.+|..+|+++.+. ..+++.+.+.+..+....| ++++|..++.+....
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~-~~~eAe~~L~~al~~- 230 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLG-HYEEAEELLEEALEK- 230 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCCC-
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh-
Confidence 77643 2432 2233333333334577788888887665 5567777777777777777 888888777776541
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 003946 697 SSTSMNFDEELLDSVLYTFVRGGFF-ARANEVVAMMEE 733 (784)
Q Consensus 697 ~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 733 (784)
-+-++.+...++......|+. +.+.+.+.++++
T Consensus 231 ----~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 231 ----DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred ----ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 122455666666666666766 566677777765
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.45 E-value=6.8e-06 Score=82.36 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=150.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 003946 496 TLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTP 575 (784)
Q Consensus 496 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 575 (784)
+-+.-.|++..+..-.+ .....-..+.....-+.++|...|+.+.+. .++.... .|.......+...+....+-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445688888876555 222221223445566778888889877544 4444433 677666655555444434556
Q ss_pred HHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 576 GALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKR 655 (784)
Q Consensus 576 ~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 655 (784)
.++.-+++.......+.+..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666655444433344444444445566789999999888654 2567778899999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 656 MRSLGHLPNAQTFHSMVTGYAA---IGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 656 m~~~g~~p~~~~~~~ll~a~~~---~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
|.+. ..|.. ..-+..++.. .|+.+.+|..+|+++.+ ...+++.+.+.+..++...|++++|.+++.+..
T Consensus 157 ~~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~-----~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 157 MQQI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSD-----KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHCC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-----CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHhc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9974 34543 3444444433 23369999999999976 456789999999999999999999999999987
Q ss_pred hCCCCCCHHHHHHHH-HHHh
Q 003946 733 EGKMFIDKYKYRTLF-LKYH 751 (784)
Q Consensus 733 ~~g~~pd~~~~~~li-~~~~ 751 (784)
+.+ +-|..+...++ +..+
T Consensus 229 ~~~-~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 229 EKD-PNDPDTLANLIVCSLH 247 (290)
T ss_dssp CC--CCHHHHHHHHHHHHHH
T ss_pred Hhc-cCCHHHHHHHHHHHHH
Confidence 653 23444444555 4444
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.0063 Score=67.58 Aligned_cols=216 Identities=13% Similarity=0.117 Sum_probs=116.4
Q ss_pred ccccccccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCC--CCchhHHHHHHHHHhccChhhHHHHHHHHHHH
Q 003946 77 SSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGF--PRKTLVNKILTSFVESLDSKWLEKAYGLVEQA 154 (784)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 154 (784)
+.+..+..+...||..-..-++++--.+-+.+.+++++++.-.... -+...-|.|+-...+. +. .++.+.+.++
T Consensus 971 DqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~---trVm~YI~rL 1046 (1666)
T KOG0985|consen 971 DQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DR---TRVMEYINRL 1046 (1666)
T ss_pred HHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-Ch---HHHHHHHHHh
Confidence 3344444455555555555566666666666666666665432111 1111223333322221 11 1233333332
Q ss_pred HHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccC
Q 003946 155 FEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDG 234 (784)
Q Consensus 155 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~ 234 (784)
-.- --|+ +.......+-+++|..+|+.--. +....+.||.- .+.++.|.+.-+
T Consensus 1047 dny-----Da~~----ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~-----------i~~ldRA~efAe-- 1099 (1666)
T KOG0985|consen 1047 DNY-----DAPD----IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIEN-----------IGSLDRAYEFAE-- 1099 (1666)
T ss_pred ccC-----Cchh----HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH-----------hhhHHHHHHHHH--
Confidence 110 1111 22223344556666666665432 44444444431 245555555544
Q ss_pred CcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 235 RVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHI 314 (784)
Q Consensus 235 ~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~ 314 (784)
+.. + ...|..+-.+-.+.|...+|++-|-.. -|+..|.-+++...+.|.+++-.+.+...
T Consensus 1100 ~~n------------~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1100 RCN------------E--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hhC------------C--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 321 2 345888888888888888887765321 36677888888888888888888877666
Q ss_pred Hhh-cCCChhhHHHHHHHHHHHHHhcCChhHHHHHH
Q 003946 315 DEA-VNLSDIQFRQFYNCLLSCHLKFGDLNSASKMV 349 (784)
Q Consensus 315 ~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 349 (784)
.+. ..+. +-+.||-+|++.+++.+-.+++
T Consensus 1160 Rkk~~E~~------id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1160 RKKVREPY------IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHhhcCcc------chHHHHHHHHHhchHHHHHHHh
Confidence 655 2333 3577888888888877665543
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.38 E-value=0.0021 Score=62.65 Aligned_cols=212 Identities=15% Similarity=0.058 Sum_probs=135.3
Q ss_pred ChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchH
Q 003946 89 DPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPL 168 (784)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 168 (784)
++.-..-+-+.+...|++.+|+.-|...++. |+..|.++.+.-.-.--.++.+.|+.-+.++++. .|+.+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------KpDF~ 106 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL------KPDFM 106 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc------CccHH
Confidence 4455556777888889999999999988873 3334433333221111122233466666666665 56665
Q ss_pred HHHHH---HHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccc
Q 003946 169 IYLSL---GLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAP 245 (784)
Q Consensus 169 ~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~ 245 (784)
..-+. .+.+.|.++.|..-|+..++.. |+. |...+|.+-+. .+.+
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~---------------------~~~~eaqskl~--~~~e------- 154 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHE--PSN---------------------GLVLEAQSKLA--LIQE------- 154 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCc---------------------chhHHHHHHHH--hHHH-------
Confidence 55333 5778899999999998888652 221 12222221111 1100
Q ss_pred ccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhH
Q 003946 246 LIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQF 325 (784)
Q Consensus 246 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~ 325 (784)
.......+..+...|+...|+....++++.. +.|...|..-..+|...|+...|..=+....+....++.
T Consensus 155 -------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe-- 224 (504)
T KOG0624|consen 155 -------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE-- 224 (504)
T ss_pred -------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH--
Confidence 1112334555667889999999999988864 568888888888999999999988777777665444444
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 326 RQFYNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
..-.+-..+...|+.+.++...++.+.
T Consensus 225 --~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 225 --GHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred --HHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 355566677788888888888877776
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.37 E-value=0.0025 Score=76.80 Aligned_cols=316 Identities=13% Similarity=0.036 Sum_probs=189.3
Q ss_pred HHHhhhcCChhHHHHHHHhhhhCC--C----CCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChh-hHHHHHH
Q 003946 260 LAGCLLFETTRKAEQLLDIMPRIG--V----KADS--NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDI-QFRQFYN 330 (784)
Q Consensus 260 l~~~~~~g~~~~A~~l~~~m~~~g--~----~pd~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~~~ 330 (784)
...+...|++++|..++......- . .+.. .....+...+...|++++|...++........... ......+
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 334456788999888887765321 0 1111 12222334566789999999988887653111111 1112456
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhh
Q 003946 331 CLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFT 410 (784)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (784)
.+...+...|++++|...+++...... .
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~-----------------------------------------------~----- 523 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMAR-----------------------------------------------Q----- 523 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHh-----------------------------------------------h-----
Confidence 666777889999999999888776321 0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCC
Q 003946 411 KDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKE----NLQVSH 486 (784)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~p 486 (784)
.+...+...++..+...+...|++++|...+.+.... +.+..+
T Consensus 524 ---------------------------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 524 ---------------------------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred ---------------------------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 0000111234556677788999999999988876542 210011
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHH
Q 003946 487 -DDAALGHVITLCISLGWLDQAHDLLDEMHLAG--VRA--SSSVYASLLKAYIEANRPREVTALLRDARSAGIQL-DASC 560 (784)
Q Consensus 487 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t 560 (784)
....+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.++|...+++.....-.. ....
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 23334445566677899999999988876431 112 23444556667788999999999988875421111 1111
Q ss_pred H-----HHHHHHHHHcCChhHHHHHHHHhHhcCCCCC--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---CCCC-C
Q 003946 561 Y-----EALLQSKIVQKDTPGALHLFKEMKESKIPRS--GHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ---RIDC-G 629 (784)
Q Consensus 561 ~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~ 629 (784)
+ ...+..+...|+.+.|...+..........+ ....+..+..++...|+.++|...++...... +..+ .
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1 1122344557888999888776543221111 01113456667788888888888887765421 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003946 630 VHDWNNVIHFFCKKRLMQDAEKALKRMRSLG 660 (784)
Q Consensus 630 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g 660 (784)
..+...+..+|.+.|+.++|...+.+..+..
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3456667777888899999999888888753
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.27 E-value=0.00041 Score=79.27 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-ASSSVYASLLKA 532 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~ 532 (784)
|..|...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+..+-+.|..++.+..+.=.+ -.+....-.+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF---~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF---GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh---cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 4444444444444445555554444432 223333444444444444444444444444432100 012222333333
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC
Q 003946 533 YIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI 589 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 589 (784)
-.+.|+.+.+..+|+.....- +.-.-.|+..|..=.++|+.+.+..+|++....++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 344444454444554444331 11233444555544455555555555555444444
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00034 Score=74.92 Aligned_cols=239 Identities=12% Similarity=0.083 Sum_probs=143.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 003946 285 KADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLA 364 (784)
Q Consensus 285 ~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 364 (784)
+|--..-..+...+.+.|-...|..+|+.+.. |.-+|.+|+..|+..+|..+..+-.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem------------w~~vi~CY~~lg~~~kaeei~~q~le---------- 452 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM------------WDPVILCYLLLGQHGKAEEINRQELE---------- 452 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH------------HHHHHHHHHHhcccchHHHHHHHHhc----------
Confidence 34444555666777777888888887777653 77777888888877777777665554
Q ss_pred HhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q 003946 365 AAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEH 444 (784)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (784)
T Consensus 453 -------------------------------------------------------------------------------- 452 (777)
T KOG1128|consen 453 -------------------------------------------------------------------------------- 452 (777)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003946 445 GILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSS 524 (784)
Q Consensus 445 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 524 (784)
-+||+..|..+.+......-+++|.++++....+. -..+-....+.++++++.+.|+.-.+.. +.-..
T Consensus 453 --k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA---------~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~ 520 (777)
T KOG1128|consen 453 --KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARA---------QRSLALLILSNKDFSEADKHLERSLEIN-PLQLG 520 (777)
T ss_pred --CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHH---------HHhhccccccchhHHHHHHHHHHHhhcC-ccchh
Confidence 25666666666666666666667777666543221 0001111122566777777666655543 22455
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG 603 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~ 603 (784)
+|-.+-.+..+.++...|.+.|..-... .|| ...||.+-.+|.+.++-.+|...+++..+.+..+ ...|...+-.
T Consensus 521 ~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~--w~iWENymlv 596 (777)
T KOG1128|consen 521 TWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH--WQIWENYMLV 596 (777)
T ss_pred HHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC--Ceeeechhhh
Confidence 6666666666777777777777666543 443 3467777777777777777777777776665322 3355555666
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 641 (784)
..+.|.+++|.+.+..+........|..+-..++....
T Consensus 597 svdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 66677777777766665543332234444444444333
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00013 Score=75.86 Aligned_cols=257 Identities=11% Similarity=0.025 Sum_probs=189.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRP 539 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 539 (784)
-+.+.|++.+|.-.|+...+.+ +-+...|--|.......++-..|+..+.+..+... -|....-.|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhH
Confidence 3568999999999999999887 67778899999999999999999999999988753 3688888899999999999
Q ss_pred HHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 540 REVTALLRDARSAGIQ--------LDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 540 ~~A~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
.+|...++.-.....+ ++...-+. ..+.....+....++|-++....-...++.....|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999887543210 00000000 1111222334455566665554422356778888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003946 612 LMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWG 690 (784)
Q Consensus 612 ~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~ 690 (784)
+|...|+......+ -|...||-|...++...+.++|+..|.+.++ ++|+ +....-|.-+|...| .+++|...|-
T Consensus 448 raiDcf~~AL~v~P--nd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG-~ykEA~~hlL 522 (579)
T KOG1125|consen 448 RAVDCFEAALQVKP--NDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLG-AYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHhcCC--chHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhh-hHHHHHHHHH
Confidence 99999999888543 2677899999999999999999999999998 5786 445556677888889 9999998887
Q ss_pred HHHhcccC-----CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003946 691 EMKSFASS-----TSMNFDEELLDSVLYTFVRGGFFARANEV 727 (784)
Q Consensus 691 ~m~~~~~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~l 727 (784)
....+.++ ....++..+|.+|=.++.-.++.|-+.+.
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 77665433 11223456788888888888877655444
No 105
>PLN02789 farnesyltranstransferase
Probab=98.26 E-value=0.0013 Score=66.90 Aligned_cols=182 Identities=8% Similarity=0.029 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 452 KIYIKLVKAFLEAG-KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWL--DQAHDLLDEMHLAGVRASSSVYAS 528 (784)
Q Consensus 452 ~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~ 528 (784)
.+|+.--..+...| ++++++..++++.+.. +-+..+|+.--..+.+.|+. +++..+++.+.+... -|..+|+.
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~ 147 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSH 147 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHH
Confidence 45555555555556 5678888888887765 44555566555555555652 567777777776653 37778887
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCh----hHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ---KDT----PGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~----~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
....+.+.|+++++++.++++.+.+. -|...|+.....+.+. |.. +++++...+++... |.+...|+.+.
T Consensus 148 R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~ 224 (320)
T PLN02789 148 RQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN--PRNESPWRYLR 224 (320)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC--CCCcCHHHHHH
Confidence 77777777888888888888877653 3566666655554443 212 34555555555543 56666666666
Q ss_pred HHHHhc----CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 003946 602 KGCAQN----HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK 642 (784)
Q Consensus 602 ~~~~~~----~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~ 642 (784)
..+... ++..+|.+++....... ..+......|++.|+.
T Consensus 225 ~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 225 GLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHhcCCcccccchhHHHHHHHhhccc--CCcHHHHHHHHHHHHh
Confidence 666552 22344555555544321 1234445555555553
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.25 E-value=0.00024 Score=70.02 Aligned_cols=189 Identities=11% Similarity=-0.017 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-HHH
Q 003946 449 PTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD-DAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-AS-SSV 525 (784)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~-~~~ 525 (784)
.....+-.+...+...|++++|...|++.....+ -.|. ..++..+..++.+.|++++|...++.+.+.... |. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3556778888899999999999999999887651 1111 235677888999999999999999999876422 11 124
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHH
Q 003946 526 YASLLKAYIEA--------NRPREVTALLRDARSAGIQLDAS-CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQE 596 (784)
Q Consensus 526 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 596 (784)
+..+..++.+. |+.++|.+.|+.+.+. .|+.. .+..+..... ... .. ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~---------~~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL---------AGK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH---------HHH
Confidence 44555555554 6788999999998766 44432 2222211110 000 00 011
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
...+...+.+.|++.+|...++...+..+-.| ....+..+..+|.+.|+.++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22455678888999999999999888764334 3567889999999999999999999888764
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.25 E-value=0.016 Score=64.66 Aligned_cols=566 Identities=11% Similarity=0.004 Sum_probs=272.3
Q ss_pred cccccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhc-
Q 003946 80 GGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEG- 158 (784)
Q Consensus 80 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~- 158 (784)
...++..|.|...|..+..+|.++|++..|+++|.+....+ |+ .+|.....+-.. .+.+.++++++.+.......
T Consensus 586 QsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~e-cd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 586 QSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVME-CDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHH
Confidence 34467788899999999999999999999999999877643 43 444444333333 24566667776666554431
Q ss_pred --cccc-CccchHHHHHHHHhhCCCCccHHHHHHHH-------hhcCCCCChHHHHHHHHHH---hhcCCCchhhHHHHH
Q 003946 159 --KQIL-LEKEPLIYLSLGLSKCGLPVPASTILRKL-------VATEQYPPVTAWSAILAHM---SLTAPGAYLAAELIL 225 (784)
Q Consensus 159 --~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~g~~p~~~~~~~ll~~~---~~~~~~~~~~~~~~~ 225 (784)
.... -...++..+...+.-.|....|...|++- ......-+...|-.+-+++ +..... .-.-.+.
T Consensus 662 ~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~--~vn~h~l 739 (1238)
T KOG1127|consen 662 LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS--IVNMHYL 739 (1238)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc--chHHHHH
Confidence 0000 01122222333333444444444444443 2222122344443333222 111000 0000111
Q ss_pred Hhhhh-hccCCcCccccccccc---------cCCCCchhhHHHHHHHhhh-------c-CChhHHHHHHHhhhhCCCCCC
Q 003946 226 EIGYL-FQDGRVDPRKKCNAPL---------IAMKPNTNTFNIALAGCLL-------F-ETTRKAEQLLDIMPRIGVKAD 287 (784)
Q Consensus 226 ~a~~~-~~~~~m~~~~~~~~~~---------~~~~p~~~~~~~ll~~~~~-------~-g~~~~A~~l~~~m~~~g~~pd 287 (784)
.++.- ++ .+..-.+..-.+ -...-+.++|-.+...|.+ . .+...|+..+..-++.. .-+
T Consensus 740 ~il~~q~e--~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann 816 (1238)
T KOG1127|consen 740 IILSKQLE--KTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANN 816 (1238)
T ss_pred HHHHHHHH--hcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hcc
Confidence 11111 11 110000000000 0011123344444443333 1 12235566665555432 123
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhc
Q 003946 288 SNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAM 367 (784)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 367 (784)
..+|+.| ......|.+.-|...|-.-....+.... +|..+--.+.++.+++.|...|...+.-+
T Consensus 817 ~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~~----~W~NlgvL~l~n~d~E~A~~af~~~qSLd----------- 880 (1238)
T KOG1127|consen 817 EGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCHC----QWLNLGVLVLENQDFEHAEPAFSSVQSLD----------- 880 (1238)
T ss_pred HHHHHHH-HHhhccchhhhhhhhhhhhhhccccchh----heeccceeEEecccHHHhhHHHHhhhhcC-----------
Confidence 3444444 3445556666666655544443333333 47777777778888888888777665522
Q ss_pred hhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCc
Q 003946 368 LPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGIL 447 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (784)
T Consensus 881 -------------------------------------------------------------------------------- 880 (1238)
T KOG1127|consen 881 -------------------------------------------------------------------------------- 880 (1238)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHH--HH--HcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIK--AE--KENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL------- 516 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~--m~--~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------- 516 (784)
+.|...|-...-.....|+.-++..+|.. .. ..| --|+..-|-+...-....|+.++-....+.+..
T Consensus 881 P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g--ka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 881 PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG--KAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc--ccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 11344554444444555555555555554 11 112 133333333333334445554443322222211
Q ss_pred --cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHH----HHHcCChhHHHHHHHHhHhc
Q 003946 517 --AGVRASSSVYASLLKAYIEANRPREVTALLRDAR---SAGIQLDASCYEALLQS----KIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 517 --~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~t~~~li~~----~~~~g~~~~A~~~~~~m~~~ 587 (784)
.+.+-+.+.|.+.....-+.+.+..|.++..+.. +. +-|..+|+.+..- ++..|.++.|..-+......
T Consensus 959 yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~--k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 959 YFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLEL--KLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 1234456777777777777777777766666542 22 3466677754332 33445666554443321110
Q ss_pred CCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003946 588 KIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666 (784)
Q Consensus 588 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 666 (784)
.+.....+-+.. .-.++++++.+.|++...--....+ ++....+.-.....+.-+.|..++-+.... -+|+..
T Consensus 1037 ----vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~ 1110 (1238)
T KOG1127|consen 1037 ----VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQAS 1110 (1238)
T ss_pred ----HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-Cccchh
Confidence 001111111111 3356788888988887754333334 234455555666677777777766655543 234444
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003946 667 TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTL 746 (784)
Q Consensus 667 ~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 746 (784)
+.-.+-..+.-.. +-.....+.+++....+..-+.-++.. .+=-.|.+.||-....+.+.+.... .+-|+..|..|
T Consensus 1111 sll~L~A~~ild~-da~~ssaileel~kl~k~e~~~~~~~l--l~e~i~~~~~r~~~vk~~~qr~~h~-~P~~~~~WslL 1186 (1238)
T KOG1127|consen 1111 SLLPLPAVYILDA-DAHGSSAILEELEKLLKLEWFCWPPGL--LKELIYALQGRSVAVKKQIQRAVHS-NPGDPALWSLL 1186 (1238)
T ss_pred hHHHHHHHHHHhh-hhhhhHHHHHHHHHhhhhHHhccChhH--HHHHHHHHhhhhHHHHHHHHHHHhc-CCCChHHHHHH
Confidence 3333322222222 223333344444432211112112221 1223567888888889999888864 34455666555
Q ss_pred H-HHHhcccccCCchhhHH
Q 003946 747 F-LKYHKTLYKGKTPKFQT 764 (784)
Q Consensus 747 i-~~~~~~~~~~~a~~~~~ 764 (784)
- ...++++.-+-+++...
T Consensus 1187 ~vrya~~n~~n~v~a~~~~ 1205 (1238)
T KOG1127|consen 1187 SVRYAQRNAKNGVVANHGK 1205 (1238)
T ss_pred HHHHHHHhccCCeehhHHH
Confidence 4 55556766665554433
No 108
>PLN02789 farnesyltranstransferase
Probab=98.23 E-value=0.0014 Score=66.66 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKEN 481 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 481 (784)
|..+|+-...++...|+++++++.+.++.+.+
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 34555555555555555555555555555444
No 109
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.0012 Score=67.92 Aligned_cols=249 Identities=12% Similarity=0.068 Sum_probs=165.5
Q ss_pred HHHcC-ChHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHH
Q 003946 461 FLEAG-KTKELTHFLIKAE---KENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG--VRASSSVYASLLKAYI 534 (784)
Q Consensus 461 ~~~~g-~~~~a~~~~~~m~---~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~ 534 (784)
+.+.| +.....++|+++. ..+ -.|... +++.=.-..++..++..-+.+...+ -.|+...+...+.+..
T Consensus 212 L~raGydp~gM~~ff~rl~~~~~~~--~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~ 285 (484)
T COG4783 212 LVRAGYDPQGMPEFFERLADQLRYG--GQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKY 285 (484)
T ss_pred HHHcCCCchhHHHHHHHHHHHHhcC--CCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHh
Confidence 34444 3344556677766 333 244443 2221112234555555555555332 2356666666666555
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHH
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMA 614 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 614 (784)
....-..+..++.+-.+. .-...-|..-+ .+...|+.++|+..++.+...- |+|+.........+.+.++.++|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~ 360 (484)
T COG4783 286 EALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAI 360 (484)
T ss_pred ccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHH
Confidence 444333333333333221 11223333333 4445689999999999988764 888888889999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 615 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+.++.+....+.. ...+-.+..+|.+.|++.+|+.++++.... .+-|+..|..|-.+|...| +..++.....
T Consensus 361 e~~~kal~l~P~~--~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g-~~~~a~~A~A---- 432 (484)
T COG4783 361 ERLKKALALDPNS--PLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELG-NRAEALLARA---- 432 (484)
T ss_pred HHHHHHHhcCCCc--cHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhC-chHHHHHHHH----
Confidence 9999999865322 455677888999999999999999998876 4558899999999999999 7777655443
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 695 FASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 695 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
..|...|++++|...+....++ ++++..+|...=
T Consensus 433 ------------------E~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~aR~d 466 (484)
T COG4783 433 ------------------EGYALAGRLEQAIIFLMRASQQ-VKLGFPDWARAD 466 (484)
T ss_pred ------------------HHHHhCCCHHHHHHHHHHHHHh-ccCCcHHHHHHH
Confidence 3456789999999999998876 567777776543
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.22 E-value=0.011 Score=61.50 Aligned_cols=152 Identities=8% Similarity=0.094 Sum_probs=105.5
Q ss_pred hhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003946 574 TPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKAL 653 (784)
Q Consensus 574 ~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 653 (784)
.+.....++++.......+ ..+|..+++..-+...++.|..+|.+..+......++..++++|.-|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 3344445555544332222 346777888888888888888888888877655457778888888666 46678888888
Q ss_pred HHHHhCCCCCCHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHH
Q 003946 654 KRMRSLGHLPNAQTF-HSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD--EELLDSVLYTFVRGGFFARANEVVAM 730 (784)
Q Consensus 654 ~~m~~~g~~p~~~~~-~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~ 730 (784)
+--+++ -+|...| ...++-+.+.+ +-+.+..+|+.... .++.|+ ..+|..++.-=..-|++..+.++-++
T Consensus 425 eLGLkk--f~d~p~yv~~YldfL~~lN-dd~N~R~LFEr~l~----s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 425 ELGLKK--FGDSPEYVLKYLDFLSHLN-DDNNARALFERVLT----SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHHh--cCCChHHHHHHHHHHHHhC-cchhHHHHHHHHHh----ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 766554 2444333 35666677777 88888888888877 444444 46788888888888888888888888
Q ss_pred HHhC
Q 003946 731 MEEG 734 (784)
Q Consensus 731 m~~~ 734 (784)
+...
T Consensus 498 ~~~a 501 (656)
T KOG1914|consen 498 RFTA 501 (656)
T ss_pred HHHh
Confidence 7753
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.21 E-value=0.0012 Score=75.78 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN---AQTFHSMVT 673 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~ 673 (784)
|..|...|.+.+.+++|.++++.|.++.+ -....|...++.+.+..+-+.|..++.+.++. -|- .....-.+.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 33333333444444444444444433332 12334555555555555555555555555542 232 111222222
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003946 674 GYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFI 738 (784)
Q Consensus 674 a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 738 (784)
--.+.| +.+.+..+|+..... .+--...|+.+++.=.++|+.+.++.+|++....++.|
T Consensus 1609 LEFk~G-DaeRGRtlfEgll~a-----yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1609 LEFKYG-DAERGRTLFEGLLSA-----YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHhhcC-CchhhHHHHHHHHhh-----CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 333445 555555555555441 11234455555555555555555555555555555443
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.18 E-value=0.00027 Score=69.67 Aligned_cols=187 Identities=12% Similarity=0.034 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHH
Q 003946 486 HDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-AS-SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDA--SCY 561 (784)
Q Consensus 486 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~ 561 (784)
.....+-.+...+.+.|+++.|...|+++.+.... |. ..++..+..+|.+.|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44555666777788888888888888887765311 11 245667777888888888888888888765321111 133
Q ss_pred HHHHHHHHHc--------CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHH
Q 003946 562 EALLQSKIVQ--------KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDW 633 (784)
Q Consensus 562 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y 633 (784)
..+-.++... |+.++|.+.|+++.+.. |.+...+..+..... +..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----------~~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----------LRNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----------HHHHHH---------HHH
Confidence 3333444433 55666777776666543 333222221111100 000000 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 634 NNVIHFFCKKRLMQDAEKALKRMRSLGH-LP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 634 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
-.+...|.+.|++++|...+++..+..- .| ....+..+..++...| ++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg-~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG-LKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Confidence 2344556677777777777777665411 12 2356666667777777 77777776666654
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.13 E-value=0.011 Score=57.89 Aligned_cols=207 Identities=8% Similarity=0.043 Sum_probs=129.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 456 KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE 535 (784)
Q Consensus 456 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 535 (784)
..+..+.-.|+...|+.....+.+.. +.|...|..--.+|...|++..|+.=+....+..- -|..++--+-..+-.
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~---~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQ---PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcC---cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHh
Confidence 34445566788888888888888765 66777777777888888988888877777665542 355555566777788
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHH
Q 003946 536 ANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAK 615 (784)
Q Consensus 536 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 615 (784)
.|+.+.++...++-++. .||-...-.. |- .+.+..+.++.|.+. ...+++.++.+
T Consensus 236 vgd~~~sL~~iRECLKl--dpdHK~Cf~~---YK---klkKv~K~les~e~~-----------------ie~~~~t~cle 290 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKL--DPDHKLCFPF---YK---KLKKVVKSLESAEQA-----------------IEEKHWTECLE 290 (504)
T ss_pred hhhHHHHHHHHHHHHcc--CcchhhHHHH---HH---HHHHHHHHHHHHHHH-----------------HhhhhHHHHHH
Confidence 88888888888887764 5665432221 11 122222333322221 11223444445
Q ss_pred HHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 616 LLQEVKEGQRIDC--GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 616 ~~~~~~~~~~~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
-.+...+..+-.+ ....+..+-.+|...|++.+|++.-.+.++ +.|| ..++.-=..+|.-.. .+|+|+.=|+..
T Consensus 291 ~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE-~YD~AI~dye~A 367 (504)
T KOG0624|consen 291 AGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDE-MYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence 4555444332111 122345566677777888888888888776 4565 666666667777777 788887777777
Q ss_pred Hh
Q 003946 693 KS 694 (784)
Q Consensus 693 ~~ 694 (784)
.+
T Consensus 368 ~e 369 (504)
T KOG0624|consen 368 LE 369 (504)
T ss_pred Hh
Confidence 65
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0035 Score=59.25 Aligned_cols=216 Identities=12% Similarity=0.065 Sum_probs=96.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN 537 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 537 (784)
++-+--.|.+..++..-..-... +-+...-.-+-++|...|.+... ..++.... .|.......+......-+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~----~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS----KTDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc----cchhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcc
Confidence 34455556666655444333222 12222233344566666654332 22333322 233333333333333233
Q ss_pred ChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHH
Q 003946 538 RPRE-VTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKL 616 (784)
Q Consensus 538 ~~~~-A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 616 (784)
+.+. ...+.+.+......-+......-...|+..|++++|++..+... +......=.....+..+++.|.+.
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 23334444433223232333333344556666666666655411 122333333344455555556655
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 617 LQEVKEGQRIDCGVHDWNNVIHFFC----KKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 617 ~~~~~~~~~~~p~~~~y~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
++.|.+.+ +..+.+-|..++. ..+.+.+|.-+|++|-++ ..|+..+.+....++...| ++++|..++++.
T Consensus 160 lk~mq~id----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~-~~eeAe~lL~ea 233 (299)
T KOG3081|consen 160 LKKMQQID----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG-RYEEAESLLEEA 233 (299)
T ss_pred HHHHHccc----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc-CHHHHHHHHHHH
Confidence 55555433 2233443333332 233455555566665554 4555555555555555555 666666655555
Q ss_pred Hh
Q 003946 693 KS 694 (784)
Q Consensus 693 ~~ 694 (784)
..
T Consensus 234 L~ 235 (299)
T KOG3081|consen 234 LD 235 (299)
T ss_pred Hh
Confidence 54
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.00038 Score=72.59 Aligned_cols=226 Identities=13% Similarity=0.116 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------C
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR--------A 521 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------~ 521 (784)
+...|--|-...+.+++-..|+.-+.+..+.. +-+....-+|--.|...|.-..|...++.-++...+ +
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~ 394 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE 394 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence 55788888888999999999999999998876 566667777778888888888899888887654311 0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHH
Q 003946 522 SSSVYASLLKAYIEANRPREVTALLRDA-RSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEML 600 (784)
Q Consensus 522 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 600 (784)
+...-+. ..+.....+....++|-++ ...+..+|...+..|--.|--.|++++|+..|+...... |.+...||-|
T Consensus 395 ~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRL 470 (579)
T KOG1125|consen 395 NEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRL 470 (579)
T ss_pred cccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHh
Confidence 1000000 1222223345556666666 455544666666677666777899999999999988755 9999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCCHHHHHH
Q 003946 601 VKGCAQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSL---------GHLPNAQTFHS 670 (784)
Q Consensus 601 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~~~~~ 670 (784)
...++...+.++|...|.+..+ +.|+ +.++-.|.-.|...|.+++|.+.|-+.+.. +..++...|..
T Consensus 471 GAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 9999999999999999999988 4565 445566777789999999999988765532 11223456666
Q ss_pred HHHHHHHcCCCHHHHH
Q 003946 671 MVTGYAAIGGKYTEVT 686 (784)
Q Consensus 671 ll~a~~~~g~~~~~a~ 686 (784)
|=.++.-.+ +.|.+.
T Consensus 548 LR~als~~~-~~D~l~ 562 (579)
T KOG1125|consen 548 LRLALSAMN-RSDLLQ 562 (579)
T ss_pred HHHHHHHcC-CchHHH
Confidence 666666666 655443
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.026 Score=61.60 Aligned_cols=220 Identities=12% Similarity=0.055 Sum_probs=124.4
Q ss_pred CCChHHHHHHHH--HHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhc--cccc
Q 003946 87 ARDPAKLSAEIE--NAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEG--KQIL 162 (784)
Q Consensus 87 ~~~~~~~~~li~--~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 162 (784)
.-|+.+-..++. -|.-.|+.+.|.+-.+-+. +...|..+-+.|.+..+++-+.-.++...+..... +...
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 346666666663 4556788898888777543 34678888888888766555444444333321100 0001
Q ss_pred Ccc-chHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccc
Q 003946 163 LEK-EPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKK 241 (784)
Q Consensus 163 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~ 241 (784)
-++ +.-......-...|.+++|..++.+-.+. -|++-+.+. .|.+++|+++-+ .-+
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~----------DLlNKlyQs-------~g~w~eA~eiAE--~~D---- 853 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKRY----------DLLNKLYQS-------QGMWSEAFEIAE--TKD---- 853 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHh-------cccHHHHHHHHh--hcc----
Confidence 122 22222333344678999999999887753 133333332 489999988876 322
Q ss_pred ccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCC-------------------CCCChhHHHHHHHHHHhcC
Q 003946 242 CNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIG-------------------VKADSNLLIIMAHIYERNG 302 (784)
Q Consensus 242 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g-------------------~~pd~~~~~~li~~~~~~g 302 (784)
.+.. ..||-.-...+-..+|.+.|++.|+.-.... -..|...|.-...-+-..|
T Consensus 854 ------RiHL-r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 854 ------RIHL-RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG 926 (1416)
T ss_pred ------ceeh-hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 1222 2244444445555677777777766432111 0123334444444445567
Q ss_pred CHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 303 RREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 303 ~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
+.+.|..+|..... |-+++...|-.|+.++|-++-++-..
T Consensus 927 emdaAl~~Y~~A~D------------~fs~VrI~C~qGk~~kAa~iA~esgd 966 (1416)
T KOG3617|consen 927 EMDAALSFYSSAKD------------YFSMVRIKCIQGKTDKAARIAEESGD 966 (1416)
T ss_pred chHHHHHHHHHhhh------------hhhheeeEeeccCchHHHHHHHhccc
Confidence 77777777766554 66666666777777777776655443
No 117
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=7.5e-06 Score=52.73 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA 665 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 665 (784)
+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6999999999999999999999999999999973
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.05 E-value=0.00047 Score=73.84 Aligned_cols=222 Identities=14% Similarity=0.115 Sum_probs=173.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
.|-...-..+...+...|-...|..+|++... |.-+|.+|+..|+..+|..+..+-.++ +||...|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 44445556677788899999999999988653 445888999999999999998888874 68899999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
.+.+.....--+++|.++++..... -...++.+ ....++++++.+.|+.-.+.+ |-...+|-.+..+..+.
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar----A~r~~~~~---~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR----AQRSLALL---ILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQL 532 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH----HHHhhccc---cccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHH
Confidence 8888887777788999988876532 11112221 223688999999998877655 55667888888888899
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHH
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~ 686 (784)
+++..|.+.|..-.... || ...||.+-.+|.+.|+-.+|...+.+..+-. .-+...|...+......| .+++|.
T Consensus 533 ek~q~av~aF~rcvtL~---Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvg-e~eda~ 607 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLE---PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVG-EFEDAI 607 (777)
T ss_pred hhhHHHHHHHHHHhhcC---CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcc-cHHHHH
Confidence 99999999998887743 44 5689999999999999999999999999876 444566777777788889 999999
Q ss_pred HHHHHHHhcc
Q 003946 687 ELWGEMKSFA 696 (784)
Q Consensus 687 ~~~~~m~~~~ 696 (784)
+.+.++..+.
T Consensus 608 ~A~~rll~~~ 617 (777)
T KOG1128|consen 608 KAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhh
Confidence 9999887753
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.0042 Score=58.22 Aligned_cols=160 Identities=8% Similarity=0.039 Sum_probs=85.7
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK 643 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 643 (784)
++-+....|+.+-|...++++...- |.+...-..-...+...|++++|.++++.+.+.++ -|.++|.-=+...-..
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHHHHHHHHHHHc
Confidence 3334444555555555555555433 33333333333334445556666666666665543 2455555555555556
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC---C
Q 003946 644 RLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGG---F 720 (784)
Q Consensus 644 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g---~ 720 (784)
|+.-+|++-+.+..+. +..|...|.-+-..|...| +++.|.-+++++.-. -+.++-.+..+.+.+.-.| +
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~-~f~kA~fClEE~ll~-----~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEG-DFEKAAFCLEELLLI-----QPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHH
Confidence 6666666666666655 4556666666666666666 666666666666541 1223444444444444333 3
Q ss_pred hHHHHHHHHHHHhC
Q 003946 721 FARANEVVAMMEEG 734 (784)
Q Consensus 721 ~~~A~~l~~~m~~~ 734 (784)
.+-|.+.+.+..+.
T Consensus 207 ~~~arkyy~~alkl 220 (289)
T KOG3060|consen 207 LELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHHh
Confidence 45556666666553
No 120
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=8.4e-06 Score=52.50 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003946 707 LLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDK 740 (784)
Q Consensus 707 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 740 (784)
+|+++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6999999999999999999999999999999983
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.02 E-value=0.0013 Score=62.25 Aligned_cols=99 Identities=9% Similarity=0.033 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH-HhcCc--HHHHHHHHHHHHhcCCCCCCHHHH
Q 003946 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC-AQNHE--AGLMAKLLQEVKEGQRIDCGVHDW 633 (784)
Q Consensus 557 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~p~~~~y 633 (784)
|...|..+-..|...|+.++|+..|++..+.. |++...+..+..++ ...|+ .++|.+++++..+.++- +..++
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~--~~~al 147 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN--EVTAL 147 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC--ChhHH
Confidence 33344444444444444444444444443332 33333333333332 23333 24444444444443221 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 634 NNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 634 ~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
..+...+.+.|++++|+..++++.+.
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555555555555555555555543
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.01 E-value=0.004 Score=70.94 Aligned_cols=81 Identities=11% Similarity=0.095 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKA 532 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 532 (784)
.+..+..+|-+.|+.++|...++++.+.. +-|..+.|.+-..|+.. ++++|.+++......
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------- 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------- 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------
Confidence 44556666666666666666666666655 45555566666666665 666666666555443
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 003946 533 YIEANRPREVTALLRDARSA 552 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~ 552 (784)
|...+++.++..++.++...
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHhhhcchHHHHHHHHHHhc
Confidence 44555666666666666554
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.01 E-value=0.0041 Score=70.13 Aligned_cols=202 Identities=13% Similarity=0.055 Sum_probs=145.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 449 PTEKIYIKLVKAFLEAGKTKELT-HFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
.++.....+=.+.+..|..++|- +++.+..+ ++..........++.--.....+ ....+...+-
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 90 (694)
T PRK15179 26 SGPTILDLLEAALAEPGESEEAGRELLQQARQ--------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQV 90 (694)
T ss_pred CCcHHHhHHHHHhcCcccchhHHHHHHHHHHH--------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHH
Confidence 35555556666777777777663 33333321 22222222222222222222222 2345688888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDA-SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
.|.......|.+++|..+++...+. .||. .....+...+.+.+++++|+...++..... |++......+..++.+
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~ 166 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDE 166 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHH
Confidence 8999999999999999999999876 5654 567778888999999999999999988876 8888899999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMV 672 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 672 (784)
.|++++|..+|+++...++ -+..++..+..++-..|+.++|...|++..+. ..|-...|+.++
T Consensus 167 ~g~~~~A~~~y~~~~~~~p--~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 167 IGQSEQADACFERLSRQHP--EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred hcchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 9999999999999997432 13667888999999999999999999998876 345555555444
No 124
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.01 E-value=0.029 Score=58.49 Aligned_cols=212 Identities=9% Similarity=0.052 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 003946 505 DQAHDLLDEMHLAGVRASSSVYASLLKAYIEA---NRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLF 581 (784)
Q Consensus 505 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 581 (784)
+++..+++.....-..-+..+|..+.+-=-.. ...+....+++++...-..--..+|..+|+.-.+..-++.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 45555555554432223344444333221111 125566677777654332223467888888888888899999999
Q ss_pred HHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003946 582 KEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661 (784)
Q Consensus 582 ~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 661 (784)
.+..+.+..+.....+++++.-++ +++.+-|.++|+.-....+- +..--...++-+...++-..|..+|++....++
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999998877755666666666554 56789999999987776542 233346778888899999999999999999877
Q ss_pred CCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCh
Q 003946 662 LPN--AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFF 721 (784)
Q Consensus 662 ~p~--~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 721 (784)
.|| ...|..+|.-=+.-| +.+.+.++-+++....+.. ..+...+-..+++.|.-.+..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vG-dL~si~~lekR~~~af~~~-qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVG-DLNSILKLEKRRFTAFPAD-QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhcchh-hcCCCChHHHHHHHHhhcccc
Confidence 776 578999999888889 9999999888876643321 333333445566666666554
No 125
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.3e-05 Score=51.21 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003946 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP 663 (784)
Q Consensus 631 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 663 (784)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 479999999999999999999999999998887
No 126
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.5e-05 Score=50.89 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003946 706 ELLDSVLYTFVRGGFFARANEVVAMMEEGKMFI 738 (784)
Q Consensus 706 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 738 (784)
.+|+.++.+|++.|+++.|.+++++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999999887
No 127
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.043 Score=57.36 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=76.0
Q ss_pred HHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhh
Q 003946 98 ENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSK 177 (784)
Q Consensus 98 ~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 177 (784)
.+.+..|+++.|+.+|-+...... +|.+.|..=..+++.. +.+.+|+.-..+..+. + +..+.-|..+-.++..
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~---~~~~~al~da~k~~~l-~--p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASL---GSYEKALKDATKTRRL-N--PDWAKGYSRKGAALFG 82 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHH---hhHHHHHHHHHHHHhc-C--CchhhHHHHhHHHHHh
Confidence 345678999999999999888664 4778888888888874 4556677777766665 2 2367778888889999
Q ss_pred CCCCccHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 003946 178 CGLPVPASTILRKLVATEQYPPVTAWSAILAHM 210 (784)
Q Consensus 178 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 210 (784)
.|++++|..-|.+=++.... +...++-+..++
T Consensus 83 lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 99999999999887764221 344455555444
No 128
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.043 Score=57.35 Aligned_cols=104 Identities=10% Similarity=-0.060 Sum_probs=76.6
Q ss_pred HHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCc
Q 003946 173 LGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPN 252 (784)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~ 252 (784)
++.+..|+++.|..+|-+.+..... |.+.|..-..+|+.. |++.+|++=-. +- ..+.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~--------~~~~~al~da~--k~----------~~l~p~ 68 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASL--------GSYEKALKDAT--KT----------RRLNPD 68 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHH--------hhHHHHHHHHH--HH----------HhcCCc
Confidence 3456789999999999988776443 778888888888886 77877765333 22 224676
Q ss_pred hh-hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHH
Q 003946 253 TN-TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIY 298 (784)
Q Consensus 253 ~~-~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 298 (784)
.. -|+..-.++.-.|++++|+.-|.+=++.. +.|...++-+.+++
T Consensus 69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 43 68888888889999999999999887753 23446666777776
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.89 E-value=0.00078 Score=60.12 Aligned_cols=99 Identities=8% Similarity=-0.164 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003946 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFF 640 (784)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 640 (784)
+......+...|++++|...|+...... |.+...+..+..++...|++++|...|+......+ .+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--SHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHHHHHHHHHH
Confidence 3444555566666666666666666543 55566666666666666666666666666665432 2445566666677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH
Q 003946 641 CKKRLMQDAEKALKRMRSLGHLPNA 665 (784)
Q Consensus 641 ~~~g~~~~A~~~~~~m~~~g~~p~~ 665 (784)
...|+.++|...|++..+. .|+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~--~p~~ 125 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM--SYAD 125 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCC
Confidence 7777777777777776663 4543
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=0.0046 Score=63.71 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
.|+...+...+.+......-..+..++.+-.+.+ -...-|..-+.. ...|+++.|+..++.+... .+-|...+.
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~aa~YG~A~~~-~~~~~~d~A~~~l~~L~~~-~P~N~~~~~ 344 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRG----GLAAQYGRALQT-YLAGQYDEALKLLQPLIAA-QPDNPYYLE 344 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCcc----chHHHHHHHHHH-HHhcccchHHHHHHHHHHh-CCCCHHHHH
Confidence 4566666666665544444344333333332212 122335544443 3567888888888887765 344677777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
...+.+.+.++..+|.+.++.+... .|+ ...+-.+-.+|.+.|++.+|+.+++...... |.++..|..|..+|..
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~ 420 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHH
Confidence 7778888888888888888888776 565 4566677778888888888888888877665 6777788888888888
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTF 668 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 668 (784)
.|+..++ --+.-..|...|+++.|...+....+. ++++..+|
T Consensus 421 ~g~~~~a-------------------~~A~AE~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 421 LGNRAEA-------------------LLARAEGYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred hCchHHH-------------------HHHHHHHHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 7754443 233445566777777777777777665 34444433
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.0028 Score=59.95 Aligned_cols=160 Identities=14% Similarity=0.009 Sum_probs=107.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 492 GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ 571 (784)
Q Consensus 492 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 571 (784)
..+-.++...|+-+....+........ +.|....+..+....+.|++.+|...|.+..... .+|...|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 344455566666666666655544321 2355566667777777788888887777776543 56777777777777777
Q ss_pred CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003946 572 KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEK 651 (784)
Q Consensus 572 g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 651 (784)
|+.++|..-|.+..+.- +.++..++.+...+.-.|+.+.|..++........ -|...-..+.......|++++|.+
T Consensus 148 Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~--ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA--ADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC--CchHHHHHHHHHHhhcCChHHHHh
Confidence 88887777777776643 55566777777777777777777777776665431 255566777777778888888887
Q ss_pred HHHHHH
Q 003946 652 ALKRMR 657 (784)
Q Consensus 652 ~~~~m~ 657 (784)
+...-.
T Consensus 224 i~~~e~ 229 (257)
T COG5010 224 IAVQEL 229 (257)
T ss_pred hccccc
Confidence 765544
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.86 E-value=0.002 Score=60.87 Aligned_cols=160 Identities=16% Similarity=0.038 Sum_probs=128.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI 534 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 534 (784)
..+-..+...|+-+....+........ +.|.......+....+.|++..|...+++..+.. ++|..+|+.+--+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHH
Confidence 556677778888888877777765443 4566666678888899999999999999988764 578999999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHH
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMA 614 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 614 (784)
+.|+.++|..-|.+..+.-. -+...+|.|...|.-.|+.+.|..++......+ +.+...-..+.-+....|++++|+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 146 QLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHH
Confidence 99999999999998877532 356678888888888899999999999888766 445677888888889999999998
Q ss_pred HHHHHHH
Q 003946 615 KLLQEVK 621 (784)
Q Consensus 615 ~~~~~~~ 621 (784)
.+...-.
T Consensus 223 ~i~~~e~ 229 (257)
T COG5010 223 DIAVQEL 229 (257)
T ss_pred hhccccc
Confidence 8765443
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.81 E-value=0.0013 Score=58.76 Aligned_cols=95 Identities=7% Similarity=-0.127 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
+......+.+.|++++|...|....... +.+...|..+..++.+.|++++|...|+...+.. +.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 4455666677777777777777776665 5566667777777777777777777777777654 33666777777777
Q ss_pred HHcCChHHHHHHHHHHHHc
Q 003946 534 IEANRPREVTALLRDARSA 552 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~ 552 (784)
...|+.++|...|+...+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776654
No 134
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.79 E-value=0.0013 Score=62.30 Aligned_cols=118 Identities=16% Similarity=0.092 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCC--hhHHH
Q 003946 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK-IVQKD--TPGAL 578 (784)
Q Consensus 502 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~-~~~g~--~~~A~ 578 (784)
++.+++...++...+.. +.|...|..|...|...|++++|...|++..+.. .-+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33444444444444432 2345555555555555555555555555554432 11334444444432 33343 25555
Q ss_pred HHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003946 579 HLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEG 623 (784)
Q Consensus 579 ~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 623 (784)
+++++..+.. |.+..++..+...+.+.|++++|...|+.+.+.
T Consensus 131 ~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555443 444445555555555555555555555555544
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.033 Score=52.90 Aligned_cols=221 Identities=10% Similarity=0.020 Sum_probs=143.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQ-AHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
.-+-.+|...|.+.... .++.... .|....+..+-.....-++.+. -.++.+.+.......|......-...|
T Consensus 45 ~y~~raylAlg~~~~~~---~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 45 VYMYRAYLALGQYQIVI---SEIKEGK---ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred HHHHHHHHHcccccccc---ccccccc---CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 34555666667654432 2222221 2333323222222222333333 344556666555554544444555668
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh----cCc
Q 003946 534 IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ----NHE 609 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~----~~~ 609 (784)
++.|++++|++..+... +......=+..+.+..+.+-|.+.+++|.+- ++..|.+-|..++.+ .+.
T Consensus 119 ~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchh
Confidence 89999999998887622 2233333344455667889999999999873 445677767666654 346
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Q 003946 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELW 689 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~ 689 (784)
+.+|.-+|++|.++. .|+..+.|-+..++...|++++|..++++.+.+. .-++.|...++..-...|.+.+-..+..
T Consensus 189 ~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 889999999999875 4788888999999999999999999999999874 3367777777777777774556667777
Q ss_pred HHHHh
Q 003946 690 GEMKS 694 (784)
Q Consensus 690 ~~m~~ 694 (784)
.+++.
T Consensus 266 ~QLk~ 270 (299)
T KOG3081|consen 266 SQLKL 270 (299)
T ss_pred HHHHh
Confidence 77776
No 136
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=3.7e-05 Score=47.77 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 661 (784)
+||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 689999999999999999999999988764
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.70 E-value=0.0068 Score=68.40 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=119.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
..++..+-.|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|...++....... -+.....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHH
Confidence 3456777777788888888888888888887654 33444566677777888888888888888877652 2566677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
.+..++.+.|++++|..+|++....+ .-+..++..+-.++-..|+.++|...|+...+.. .+....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~~~----- 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRRLV----- 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHHHH-----
Confidence 77777888888888888888887642 2236777788888888888888888888877654 233344444432
Q ss_pred CcHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHhcC
Q 003946 608 HEAGLMAKLLQEVKEGQR---IDCGVHDWNNVIHFFCKKR 644 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~---~~p~~~~y~~li~~~~~~g 644 (784)
++..-..+++.+.-... ..-.+.+...+|.-|.+..
T Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 231 -DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred -HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 22233344444432211 1113445566666665543
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.69 E-value=0.027 Score=64.48 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
+-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|+.. ++++|..++.+..
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 4444455555555555555555555544 23455555555555555 5555555554443
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=4.5e-05 Score=47.39 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=25.3
Q ss_pred hhHHHHHHHhhhcCChhHHHHHHHhhhhCCC
Q 003946 254 NTFNIALAGCLLFETTRKAEQLLDIMPRIGV 284 (784)
Q Consensus 254 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~ 284 (784)
+|||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.66 E-value=0.0024 Score=56.51 Aligned_cols=92 Identities=15% Similarity=0.008 Sum_probs=42.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 003946 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK 642 (784)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~ 642 (784)
.+...+...|+.++|.+.|+.....+ |.+...+..+...+.+.|++++|...++......+ .+...|..+...|..
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--DDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHH
Confidence 33344444445555555544444432 33344444444444444444444444444433221 123334444445555
Q ss_pred cCCHHHHHHHHHHHHh
Q 003946 643 KRLMQDAEKALKRMRS 658 (784)
Q Consensus 643 ~g~~~~A~~~~~~m~~ 658 (784)
.|+.++|...|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 141
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.63 E-value=0.00086 Score=54.44 Aligned_cols=80 Identities=8% Similarity=0.135 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCCH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQV-SHDDAALGHVITLCISLGW--------LDQAHDLLDEMHLAGVRASS 523 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~p~~~~~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~~~~ 523 (784)
|-...|..+...+++.....+|..+++.| + .|+..+|+.++.+.++..- +-....+|+.|...+++|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~--i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNG--ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcH
Confidence 44455666666677777777777777766 5 6777777777766665321 22344455555555555555
Q ss_pred HHHHHHHHHHH
Q 003946 524 SVYASLLKAYI 534 (784)
Q Consensus 524 ~~~~~li~~~~ 534 (784)
.+|+.++..+.
T Consensus 105 etYnivl~~Ll 115 (120)
T PF08579_consen 105 ETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 142
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.63 E-value=0.00054 Score=71.40 Aligned_cols=124 Identities=12% Similarity=0.063 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
..+......+++.+....+++++..++.+.+........-..|..++|+.|.+.|..+.+..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44777888899999999999999999999886632122333445699999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ 571 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 571 (784)
.||+.+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998887777888888888887765
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.62 E-value=0.0021 Score=66.91 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
...+|+..+...++++.|..+|+++.+. .|+. ...++..+...++-.+|++++++..+.. |.+..........|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3345556666667788888888887765 3543 3346666666777777888877777554 55566666666777
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 605 AQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
.+.++++.|.++.+.+.+.. |+ ..+|..|..+|...|++++|+..++.++-
T Consensus 245 l~k~~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77888888888888777743 43 45888899999999999999888887763
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.60 E-value=0.0034 Score=55.50 Aligned_cols=98 Identities=13% Similarity=0.018 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 489 AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568 (784)
Q Consensus 489 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 568 (784)
.....+...+.+.|++++|...|+.+...+ +.+...+..+...|.+.|++++|..++++..+.+ ..+...+..+-..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555556666666666666665543 2355566666666666666666666666655543 23445555555566
Q ss_pred HHcCChhHHHHHHHHhHhcC
Q 003946 569 IVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 569 ~~~g~~~~A~~~~~~m~~~~ 588 (784)
...|+.++|+..|+...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 66666666666666655543
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.02 Score=53.88 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=122.6
Q ss_pred CChhHHHHHHHHhHh---cC-CCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 572 KDTPGALHLFKEMKE---SK-IPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 572 g~~~~A~~~~~~m~~---~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
.+.++.++++.++.. .| ..++-...|..++-+....|+.+.|...++.+....+-.+.+.-..+|. +-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchh
Confidence 456777777766653 23 3355566778888888899999999999999988764444444444433 45689999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003946 648 DAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEV 727 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 727 (784)
+|+++++..++.+ +.|.+++--=+......| +--+|++-+.+..+ .+.-|.+.|.-|...|...|++++|.-.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G-K~l~aIk~ln~YL~-----~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQG-KNLEAIKELNEYLD-----KFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcC-CcHHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 9999999999875 446777776666666777 66677776666655 3666999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHH
Q 003946 728 VAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 728 ~~~m~~~g~~pd~~~~~~li 747 (784)
+++|.- +.|-...|..=+
T Consensus 177 lEE~ll--~~P~n~l~f~rl 194 (289)
T KOG3060|consen 177 LEELLL--IQPFNPLYFQRL 194 (289)
T ss_pred HHHHHH--cCCCcHHHHHHH
Confidence 999986 356655554433
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.50 E-value=0.0059 Score=54.67 Aligned_cols=127 Identities=9% Similarity=0.066 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVT 673 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~ 673 (784)
|..++..+ ..++...+...++.+...++-.| .....-.+...+...|++++|...|+........|+ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344444 25566677777777776553211 112333455777889999999999999998752222 223445667
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003946 674 GYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMM 731 (784)
Q Consensus 674 a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 731 (784)
.+...| ++++|...++.... -......+....+.|.+.|++++|...|++.
T Consensus 94 ~~~~~~-~~d~Al~~L~~~~~------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQG-QYDEALATLQQIPD------EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcC-CHHHHHHHHHhccC------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 778888 99999999876433 2335567788899999999999999998764
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.46 E-value=0.0047 Score=64.30 Aligned_cols=121 Identities=13% Similarity=0.051 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI 534 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 534 (784)
.+|+..+...++++.|..+|+++.+. .|+. ...+...+...++-.+|.+++++..+.. +-+......-...|.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~----~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER----DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc----CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444445555555555555555432 3443 2234455555555555555555555331 224444444444455
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHh
Q 003946 535 EANRPREVTALLRDARSAGIQLDAS-CYEALLQSKIVQKDTPGALHLFKEM 584 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m 584 (784)
+.++++.|..+.+++.+. .|+.. +|..|..+|...|+++.|+..++.+
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555555443 34332 5555555555555555555555543
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.45 E-value=0.0059 Score=54.67 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASS--SVYASL 529 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~l 529 (784)
..|..++..+ ..++...+...++.+....+.........-.+-..+...|++++|...|+........|+. ...-.|
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3556666666 4777788777788877765211111222333446667778888888888888776522221 233446
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKE 583 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 583 (784)
...+...|++++|+..++..... ......+...-..|...|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777778888888887664332 22344555666677777777777777764
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.42 E-value=0.0037 Score=50.87 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAGV-RASSSVYASLLKAYIEAN--------RPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
-...|..|...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+++.|...+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999999988763 355789999999999999999999
Q ss_pred HHHHHHHHHc
Q 003946 562 EALLQSKIVQ 571 (784)
Q Consensus 562 ~~li~~~~~~ 571 (784)
+.++..+.+.
T Consensus 108 nivl~~Llkg 117 (120)
T PF08579_consen 108 NIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.36 E-value=0.003 Score=65.99 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=105.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 484 VSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA--GVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 484 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
.+........+++.+....+++.+..++-..... ....-..|..++|..|.+.|..+++..+++.=...|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3667777888999998888999999999888865 22222345569999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
|.||..+.+.|++..|.++..+|...+. .+++.|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~-~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEE-FDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988776 35567888888888776
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.0075 Score=60.68 Aligned_cols=143 Identities=10% Similarity=0.078 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGY 675 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 675 (784)
+|..++..+-+.+..+.|.++|....+......++....+++. |...++.+.|.++|+...+. +..+...|...++-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4556666666666666777777666654433334433344443 33346666688888888776 555677777778888
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNF---DEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFL 748 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 748 (784)
...+ +.+.|..+|+.... .+.+ ....|...++.=.+.|+++.+.++.+++.+ ..|+......++.
T Consensus 81 ~~~~-d~~~aR~lfer~i~-----~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLN-DINNARALFERAIS-----SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHTT--HHHHHHHHHHHCC-----TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHhC-cHHHHHHHHHHHHH-----hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 8888 88888888888775 1222 234788888888888888888888888887 3566666666663
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.17 E-value=0.015 Score=49.79 Aligned_cols=60 Identities=12% Similarity=-0.024 Sum_probs=24.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQ--LDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
.+...+.+.|++++|...|+.+...... .....+..+..++.+.|+.++|...++++.+.
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3444444444444444444444332100 01223333334444444444444444444443
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.16 E-value=0.36 Score=49.20 Aligned_cols=110 Identities=13% Similarity=0.159 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
+.+..|.-+...|+...|.++-.+.. -||..-|-..+.+++..++|++-.++... .- + ++-|...+.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK-s--PIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK-S--PIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC-C--CCChHHHHHHH
Confidence 33444555566677666666655554 46777777777777777777765554322 11 1 24566666777
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 605 AQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRM 656 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 656 (784)
.+.|+..+|..+...+. +..-+..|.++|++.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 77776666666665522 345566667777777666654433
No 154
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.16 E-value=0.0085 Score=55.33 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----------------CChHHHH
Q 003946 485 SHDDAALGHVITLCIS-----LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA----------------NRPREVT 543 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~ 543 (784)
..|..+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4577778888888875 477888888889999999999999999999987542 2245678
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 544 ALLRDARSAGIQLDASCYEALLQSKIVQKD 573 (784)
Q Consensus 544 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 573 (784)
+++++|...|+-||..|+..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888876543
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.15 E-value=0.66 Score=51.98 Aligned_cols=222 Identities=14% Similarity=0.133 Sum_probs=149.2
Q ss_pred HhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCC
Q 003946 101 INEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGL 180 (784)
Q Consensus 101 ~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 180 (784)
...+++..|+....++.+.. | ...|..+++++... +.+.+.+|+.+++..... . +.+..+...+..+|-..|+
T Consensus 20 ld~~qfkkal~~~~kllkk~--P-n~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~-~--~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--P-NALYAKVLKALSLF-RLGKGDEALKLLEALYGL-K--GTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--C-CcHHHHHHHHHHHH-HhcCchhHHHHHhhhccC-C--CCchHHHHHHHHHHHHHhh
Confidence 36789999999999988854 4 35677888888764 467778888777776544 1 1255556668889999999
Q ss_pred CccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHH----HhhhhhccCCcCccccccccccCCCCchhhH
Q 003946 181 PVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELIL----EIGYLFQDGRVDPRKKCNAPLIAMKPNTNTF 256 (784)
Q Consensus 181 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~----~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~ 256 (784)
.++|..+++...+. .|+..-...+..+|.|. +.+. -|+++++ ..+.+.+.+
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~--------~~yk~qQkaa~~LyK---------------~~pk~~yyf 147 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVRE--------KSYKKQQKAALQLYK---------------NFPKRAYYF 147 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH---------------hCCcccchH
Confidence 99999999999875 56766666667777775 4443 3555555 235567777
Q ss_pred HHHHHHhhhcC-C---------hhHHHHHHHhhhhCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHH-HHhhcCCChhh
Q 003946 257 NIALAGCLLFE-T---------TRKAEQLLDIMPRIGVKADS-NLLIIMAHIYERNGRREELRKLQRH-IDEAVNLSDIQ 324 (784)
Q Consensus 257 ~~ll~~~~~~g-~---------~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~l~~~-~~~~~~~~~~~ 324 (784)
.++++...+.- . ...|...++.+.+.+-+... .-.-.-...+-..|.+++|..++.. ..+...+....
T Consensus 148 WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~ 227 (932)
T KOG2053|consen 148 WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLY 227 (932)
T ss_pred HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchH
Confidence 88888777643 1 23445566666554312222 1111122345678889999999843 33332222221
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 003946 325 FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAK 357 (784)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 357 (784)
.-+.-++.+.+.+++.+..++-.++.++|.
T Consensus 228 ---l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 228 ---LENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred ---HHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 356778888999999999999998888763
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.12 E-value=0.011 Score=47.94 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
|..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 3445555666677777777777666554 3333455556666666666667766666666543 22334556666666
Q ss_pred HHcCChHHHHHHHHHHHH
Q 003946 534 IEANRPREVTALLRDARS 551 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~ 551 (784)
...|+.++|...+....+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 666666666666665543
No 157
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.10 E-value=0.44 Score=49.08 Aligned_cols=129 Identities=9% Similarity=0.013 Sum_probs=82.9
Q ss_pred HhcCc-HHHHHHHHHHHHhcCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHH
Q 003946 605 AQNHE-AGLMAKLLQEVKEGQRIDCGVHDWNNVI----HFFCK---KRLMQDAEKALKRMRSLGHLPN----AQTFHSMV 672 (784)
Q Consensus 605 ~~~~~-~~~a~~~~~~~~~~~~~~p~~~~y~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll 672 (784)
-+.|. -+.|.++++.+..-.. -|...-|.+. ..|.. ...+.+-.++-+-..+.|+.|- ...-|.|-
T Consensus 390 W~~g~~dekalnLLk~il~ft~--yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTN--YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 33444 6677777777765321 1333323222 12221 1224444455555567788773 33445555
Q ss_pred HH--HHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 673 TG--YAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 673 ~a--~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
+| +...| +++++.-.-..+.+ +.|++.+|..+.-.+....++++|...+.++ +|+..++++=+
T Consensus 468 DAEyLysqg-ey~kc~~ys~WL~~------iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 468 DAEYLYSQG-EYHKCYLYSSWLTK------IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHH------hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 43 45667 99998877777765 8899999999999999999999999999885 56777776654
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.08 E-value=0.028 Score=48.18 Aligned_cols=102 Identities=12% Similarity=-0.002 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR--ASSSVYASL 529 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~l 529 (784)
.++..+...+.+.|++++|...|..+....+.-+.....+..+..++.+.|+++.|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 356677888899999999999999998764211112345666889999999999999999999875321 225667888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcC
Q 003946 530 LKAYIEANRPREVTALLRDARSAG 553 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g 553 (784)
..++.+.|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999999998874
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.65 Score=50.27 Aligned_cols=202 Identities=10% Similarity=0.149 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVY--- 526 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--- 526 (784)
|....-.+..++...|..++|.+.|-+- + .|.. .+..|...+++.+|.++-+...- |.+.+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~---s---~pka-----Av~tCv~LnQW~~avelaq~~~l----~qv~tliak 915 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRR---S---LPKA-----AVHTCVELNQWGEAVELAQRFQL----PQVQTLIAK 915 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhc---c---CcHH-----HHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHH
Confidence 4455667788888889888888777542 2 2332 56777788888888776554321 111111
Q ss_pred -----------HHHHHHHHHcCChHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC
Q 003946 527 -----------ASLLKAYIEANRPREVTALLRDARS----AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR 591 (784)
Q Consensus 527 -----------~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 591 (784)
---|..+-+.|+.-+|-+++.+|.+ ++.+|-..--.-++.++.- .+..++++-.+....+|...
T Consensus 916 ~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLv-E~h~~~ik~~~~~~~~g~~~ 994 (1189)
T KOG2041|consen 916 QAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLV-ENHRQTIKELRKIDKHGFLE 994 (1189)
T ss_pred HHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhcCcch
Confidence 1134566777888888888888843 3333322222222222221 12223333333333333211
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHH
Q 003946 592 SGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL-GHLPNAQTFHS 670 (784)
Q Consensus 592 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ 670 (784)
+.. . +...+-..++..+.+..-.. ....+|-.|.+--...|.++.|++.--.+.+- .+-|....|+.
T Consensus 995 dat---~-----lles~~l~~~~ri~~n~Wrg----AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySl 1062 (1189)
T KOG2041|consen 995 DAT---D-----LLESGLLAEQSRILENTWRG----AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSL 1062 (1189)
T ss_pred hhh---h-----hhhhhhhhhHHHHHHhhhhh----HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHH
Confidence 100 0 11222222333333322211 12344555555556678888877754333221 25566677775
Q ss_pred HHHHHHHcC
Q 003946 671 MVTGYAAIG 679 (784)
Q Consensus 671 ll~a~~~~g 679 (784)
+.-+-+...
T Consensus 1063 lALaaca~r 1071 (1189)
T KOG2041|consen 1063 LALAACAVR 1071 (1189)
T ss_pred HHHHHhhhh
Confidence 554443333
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.03 E-value=0.013 Score=47.38 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKRM 656 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~m 656 (784)
+..+...+...|+.++|...+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333334444444444444444433
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.01 E-value=0.043 Score=60.03 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 631 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
..|.++...+...|++++|...+++..+. .|+...|..+...+...| +.++|...+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G-~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKG-DNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Confidence 44555555555556666666666666664 356666666666666666 66666666666654
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.00 E-value=0.015 Score=58.55 Aligned_cols=145 Identities=16% Similarity=0.213 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 490 ALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE-ANRPREVTALLRDARSAGIQLDASCYEALLQSK 568 (784)
Q Consensus 490 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 568 (784)
+|..+|...-+.+.++.|+.+|.+..+.+ ..+..+|......-.. .++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46666666666666777777776666432 1123333333333222 34455567777666544 234555666666666
Q ss_pred HHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003946 569 IVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQD 648 (784)
Q Consensus 569 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 648 (784)
...++.+.|..+|++.... + +.... -...|...+.-=.+.|+++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l-~~~~~---------------------------------~~~iw~~~i~fE~~~Gdl~~ 125 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-L-PKEKQ---------------------------------SKKIWKKFIEFESKYGDLES 125 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-S-SCHHH---------------------------------CHHHHHHHHHHHHHHS-HHH
T ss_pred HHhCcHHHHHHHHHHHHHh-c-CchhH---------------------------------HHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666665543 1 21110 22356666666677777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 649 AEKALKRMRSLGHLPNAQTFHSMVT 673 (784)
Q Consensus 649 A~~~~~~m~~~g~~p~~~~~~~ll~ 673 (784)
+.++.+++.+. -|+...+..+++
T Consensus 126 v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 126 VRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHHHHHHHH--hhhhhHHHHHHH
Confidence 77777777663 444333344443
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.95 E-value=0.047 Score=50.51 Aligned_cols=82 Identities=10% Similarity=-0.007 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVT 673 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 673 (784)
.+..+...+...|++++|...|+......+-.++ ...|..+...|.+.|++++|...+++..+. .| +...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3444444444455555555555544432211111 245666666777777777777777766653 34 3444445555
Q ss_pred HHHHcC
Q 003946 674 GYAAIG 679 (784)
Q Consensus 674 a~~~~g 679 (784)
.+...|
T Consensus 115 ~~~~~g 120 (172)
T PRK02603 115 IYHKRG 120 (172)
T ss_pred HHHHcC
Confidence 555555
No 164
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.94 E-value=1 Score=50.59 Aligned_cols=179 Identities=10% Similarity=0.007 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHHHHHhcccccCccch-HHHHHHH--HhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCc
Q 003946 141 SKWLEKAYGLVEQAFEEGKQILLEKEP-LIYLSLG--LSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGA 217 (784)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 217 (784)
....++|+....++.+. .|+. |...+.+ ..|.|+.++|..+++.....+.. |..|...+-.+|...
T Consensus 22 ~~qfkkal~~~~kllkk------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~---- 90 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL---- 90 (932)
T ss_pred hHHHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH----
Confidence 45566788888887776 3333 3334444 34788899998888877665444 777777777777775
Q ss_pred hhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHH
Q 003946 218 YLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHI 297 (784)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~ 297 (784)
+..++|..+++ +. .+.-|+..-...+..+|+|.+++.+-.+.-=+|.+ .++-+.+.+=++++.
T Consensus 91 ----~~~d~~~~~Ye--~~----------~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 91 ----GKLDEAVHLYE--RA----------NQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISL 153 (932)
T ss_pred ----hhhhHHHHHHH--HH----------HhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHH
Confidence 78888888888 55 44567766666777777787777654443333333 122344444445555
Q ss_pred HHhcC----------CHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHHhcCChhHHHHHHH
Q 003946 298 YERNG----------RREELRKLQRHIDEAV-NLSDIQFRQFYNCLLSCHLKFGDLNSASKMVL 350 (784)
Q Consensus 298 ~~~~g----------~~~~A~~l~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (784)
+.+.- -+..|.+.++.+.+.. ......- ..--....-..|+.++|.+++.
T Consensus 154 ilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE---~~Lyl~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 154 ILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAE---IILYLLILELQGKYQEALEFLA 214 (932)
T ss_pred HHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHH---HHHHHHHHHhcccHHHHHHHHH
Confidence 44332 1334566666666553 2211111 1111223345566777777774
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.86 E-value=0.078 Score=53.62 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=85.1
Q ss_pred HHHHHHHHHhc-CcHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH
Q 003946 597 FEMLVKGCAQN-HEAGLMAKLLQEVKEGQRIDC----GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHL-----PNAQ 666 (784)
Q Consensus 597 ~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p----~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~ 666 (784)
+..+...|... |+++.|.+.|+...+-..... -...+..+...+.+.|++++|.++|++....-.. ++..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444455565 778888888876654321111 1345678888999999999999999998875322 2222
Q ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC--HHHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCCHH
Q 003946 667 -TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD--EELLDSVLYTFVRG--GFFARANEVVAMMEEGKMFIDKY 741 (784)
Q Consensus 667 -~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~--~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~pd~~ 741 (784)
.|-..+-.+...| +...|...+++..... .++..+ ......|+.+|-.. ..+++|..-|+.+. +.|..
T Consensus 197 ~~~l~a~l~~L~~~-D~v~A~~~~~~~~~~~--~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w 269 (282)
T PF14938_consen 197 EYFLKAILCHLAMG-DYVAARKALERYCSQD--PSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNW 269 (282)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHGTTS--TTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHH
Confidence 2223334556678 9999999999987632 234334 34566777777643 34667777776665 34555
Q ss_pred HHHHHH
Q 003946 742 KYRTLF 747 (784)
Q Consensus 742 ~~~~li 747 (784)
--..|+
T Consensus 270 ~~~~l~ 275 (282)
T PF14938_consen 270 KTKMLL 275 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.86 E-value=0.023 Score=59.49 Aligned_cols=92 Identities=14% Similarity=0.008 Sum_probs=64.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
...+...|++++|+..|++..+.. .-+...|..+..+|...|++++|+..+++..... |.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCC
Confidence 345566777777777777777653 2355667777777777777777777777777654 6666677777777777777
Q ss_pred HHHHHHHHHHHHhcC
Q 003946 610 AGLMAKLLQEVKEGQ 624 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~ 624 (784)
+++|...|+...+..
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777776644
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.78 E-value=0.086 Score=57.75 Aligned_cols=74 Identities=9% Similarity=-0.005 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 591 RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 591 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
+.++..|..+.-.....|++++|...++.....+ |+...|..+...|...|+.++|.+.+++... +.|...||.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~ 490 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLY 490 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHH
Confidence 4445566666555556677777777777777643 5677788888888888888888888887776 456555543
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.76 E-value=0.0033 Score=50.10 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=7.5
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 003946 637 IHFFCKKRLMQDAEKALK 654 (784)
Q Consensus 637 i~~~~~~g~~~~A~~~~~ 654 (784)
..+|.+.|++++|++.++
T Consensus 65 a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHh
Confidence 344444444444444443
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.76 E-value=0.0034 Score=49.99 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCCHHHHHH
Q 003946 609 EAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA-QTFHSMVTGYAAIGGKYTEVTE 687 (784)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~~a~~ 687 (784)
+++.|..+++.+.+..+..|+...+-.+..+|.+.|++++|.+++++ .+ ..|+. .....+..+|...| ++++|+.
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~-~y~eAi~ 79 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLG-KYEEAIK 79 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhC-CHHHHHH
Confidence 34444444444443322111222333345555555555555555544 11 11221 22223344445555 5555555
Q ss_pred HHH
Q 003946 688 LWG 690 (784)
Q Consensus 688 ~~~ 690 (784)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 170
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.75 E-value=0.03 Score=51.85 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------------CCHHHHHHH
Q 003946 629 GVHDWNNVIHFFCK-----KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG---------------GKYTEVTEL 688 (784)
Q Consensus 629 ~~~~y~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g---------------~~~~~a~~~ 688 (784)
+-.+|..+|+.|.+ .|.++=....+..|.+-|+.-|..+|+.||+.+=+.. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55667777777764 3566667777777777777778888888777654311 145668889
Q ss_pred HHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 003946 689 WGEMKSFASSTSMNFDEELLDSVLYTFVRGGFF-ARANEVVAMME 732 (784)
Q Consensus 689 ~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~ 732 (784)
+++|.. .|+-||.+++..|++.+++.+.. .+..++.-.|.
T Consensus 126 L~qME~----~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 126 LEQMEN----NGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHH----cCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999988 79999999999999999887752 44455554444
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.70 E-value=0.093 Score=48.54 Aligned_cols=82 Identities=9% Similarity=-0.056 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLD--ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG 603 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~ 603 (784)
+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|+..+++..+.. |.+...+..+...
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 33344444444444444444444433221111 2334444444444455555555544444422 3333344444444
Q ss_pred HHhcCc
Q 003946 604 CAQNHE 609 (784)
Q Consensus 604 ~~~~~~ 609 (784)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444443
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.61 E-value=0.048 Score=50.25 Aligned_cols=62 Identities=6% Similarity=-0.211 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
+..+...+...|++++|...|+......+-.+ ...+|..+...|...|+.++|++.+++...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444555555555544443221101 123556666666666666666666666655
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.59 E-value=0.83 Score=44.79 Aligned_cols=54 Identities=15% Similarity=-0.004 Sum_probs=29.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 498 CISLGWLDQAHDLLDEMHLAGVRASSSVY---ASLLKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+.+.|++++|.+.|+.+...-.. +.... -.+..+|-+.+++++|...+++..+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34556666666666666654221 12221 23445556666666666666666554
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.55 E-value=0.071 Score=55.76 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=83.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN 537 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 537 (784)
...+...|++++|++.|.+..+.. +-+...|..+..+|.+.|++++|...++...+.. +.+...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 445668899999999999999876 5677788888899999999999999999998875 336778888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 538 RPREVTALLRDARSAGIQLDASCYEALL 565 (784)
Q Consensus 538 ~~~~A~~~~~~m~~~g~~p~~~t~~~li 565 (784)
++++|...|++..+. .|+.......+
T Consensus 85 ~~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999999998875 45544444443
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.48 E-value=0.61 Score=41.98 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 520 RASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
.|++..--.|..++.+.|+..+|...|++...--+.-|......+.++....+++..|...++++.+.+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 466777777788888888888888888877654455577777777777777788888888887776654
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.47 E-value=0.039 Score=53.54 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=76.6
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
+.+.+++++|+..|.+.++.. |.+.+.|..-..+|.+.|.++.|.+-.+....-++ .-..+|..|-.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCcHH
Confidence 445678888888888887754 77788888888888888888888887777766432 13567888888888889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003946 648 DAEKALKRMRSLGHLPNAQTFHSMVTG 674 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p~~~~~~~ll~a 674 (784)
+|++.|++.++ +.|+..+|-.=+..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99888888887 67887777654443
No 177
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.43 E-value=0.085 Score=45.34 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHH
Q 003946 698 STSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG-KMFIDKYKYRTLF 747 (784)
Q Consensus 698 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~~~~~li 747 (784)
...+.|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3567899999999999999999999999999988865 7888899999999
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.41 E-value=0.16 Score=43.24 Aligned_cols=105 Identities=13% Similarity=0.055 Sum_probs=66.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHH
Q 003946 637 IHFFCKKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYT 714 (784)
Q Consensus 637 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~ 714 (784)
-.++-..|+.++|+.+|++....|.... ...+-.+-.++...| ++++|..++++.....++... +......+.-+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG-~~deA~~~L~~~~~~~p~~~~--~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG-RYDEALALLEEALEEFPDDEL--NAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCccc--cHHHHHHHHHH
Confidence 4456677888888888888888776554 335556667777888 888888888877653222111 22223334457
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 715 FVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFL 748 (784)
Q Consensus 715 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 748 (784)
+...|+.++|.+++-.... ++...|.--|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~ 114 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIR 114 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 7778888888888766553 33335544443
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.40 E-value=0.19 Score=42.72 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=8.4
Q ss_pred HHcCChHHHHHHHHHHHHcC
Q 003946 534 IEANRPREVTALLRDARSAG 553 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g 553 (784)
-..|+.++|+.+|++....|
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~g 31 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAG 31 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcC
Confidence 33444444444444444433
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.40 E-value=1.1 Score=43.93 Aligned_cols=81 Identities=11% Similarity=0.020 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAAL---GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 526 (784)
+...+-.....+.+.|++++|.+.|+++.... +-..... -.+..++.+.+++++|...++...+.-..-...-+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 44444445556678999999999999998875 2222222 34567788999999999999999976433222334
Q ss_pred HHHHHHH
Q 003946 527 ASLLKAY 533 (784)
Q Consensus 527 ~~li~~~ 533 (784)
...+.+.
T Consensus 108 a~Y~~g~ 114 (243)
T PRK10866 108 VLYMRGL 114 (243)
T ss_pred HHHHHHH
Confidence 4444443
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.39 E-value=0.19 Score=44.52 Aligned_cols=91 Identities=12% Similarity=-0.022 Sum_probs=52.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+..-+...|++++|..+|+-+.... .-+..-|-.|-.++-..|++++|+..|....... |+++..+-.+..++...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHcC
Confidence 3344456666666666666665442 1234445555555556666666666666665544 555556666666666666
Q ss_pred cHHHHHHHHHHHHh
Q 003946 609 EAGLMAKLLQEVKE 622 (784)
Q Consensus 609 ~~~~a~~~~~~~~~ 622 (784)
+.+.|.+.|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655544
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.34 E-value=0.067 Score=53.83 Aligned_cols=270 Identities=11% Similarity=-0.015 Sum_probs=161.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHH--Hc--CCC-CCHHHHHHHH
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDA----ALGHVITLCISLGWLDQAHDLLDEMH--LA--GVR-ASSSVYASLL 530 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~--~~--g~~-~~~~~~~~li 530 (784)
-+++.|+......+|+...+.| .-|.. +|.-|.++|.-.+++++|++++..=. .+ |-+ -.......|-
T Consensus 26 RLck~gdcraGv~ff~aA~qvG---TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG---TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc---chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 4789999999999999999888 34443 46667788888899999998875322 11 100 0122233344
Q ss_pred HHHHHcCChHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHHcCC--------------------hhHHHHHHHHh-
Q 003946 531 KAYIEANRPREVTALLRDA----RSAGIQ-LDASCYEALLQSKIVQKD--------------------TPGALHLFKEM- 584 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m----~~~g~~-p~~~t~~~li~~~~~~g~--------------------~~~A~~~~~~m- 584 (784)
+.+--.|.+++|...-.+= .+.|-+ .....+-.+-..|...|+ ++.|.++|.+-
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4444556666654432221 111100 122334444455543331 23344444432
Q ss_pred ---HhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH---hcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 585 ---KESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK---EGQR-IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 585 ---~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~-~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
.+.|-.-..-..|..|...|.-.|+++.|....+.-. +..+ -......+..|..++.-.|+++.|.+.++.-.
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 2222111222356777777777888998887654321 1221 11123568888999999999999999887654
Q ss_pred hC----CCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003946 658 SL----GHL-PNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASST-SMNFDEELLDSVLYTFVRGGFFARANEVVAMM 731 (784)
Q Consensus 658 ~~----g~~-p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 731 (784)
.. |-+ ....+..+|-.+|.-.. .+++|+.++.+-.....+. ...-....|.+|.++|...|..++|+...+.-
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~-e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLK-EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 32 222 23456667888888888 8999998887644322111 12224567889999999999999998877665
Q ss_pred Hh
Q 003946 732 EE 733 (784)
Q Consensus 732 ~~ 733 (784)
.+
T Consensus 342 l~ 343 (639)
T KOG1130|consen 342 LR 343 (639)
T ss_pred HH
Confidence 53
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.32 E-value=2.1 Score=46.52 Aligned_cols=132 Identities=13% Similarity=0.029 Sum_probs=81.2
Q ss_pred CCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHH
Q 003946 178 CGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFN 257 (784)
Q Consensus 178 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~ 257 (784)
-|++++|.+++-+|-++ |. .|..+.+. |++-....+++.|.-+ ..-+--..+|+
T Consensus 747 ~g~feeaek~yld~drr----DL-----Aielr~kl--------gDwfrV~qL~r~g~~d---------~dD~~~e~A~r 800 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR----DL-----AIELRKKL--------GDWFRVYQLIRNGGSD---------DDDEGKEDAFR 800 (1189)
T ss_pred hcchhHhhhhhhccchh----hh-----hHHHHHhh--------hhHHHHHHHHHccCCC---------cchHHHHHHHH
Confidence 58899999999888765 21 12222222 6666666666522111 01122245788
Q ss_pred HHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHH
Q 003946 258 IALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHL 337 (784)
Q Consensus 258 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~ 337 (784)
.+-..++....+++|.+.|..-. |. ...+.++-+..++++-+.+-..+++... ..-.+.+++.
T Consensus 801 ~ig~~fa~~~~We~A~~yY~~~~------~~---e~~~ecly~le~f~~LE~la~~Lpe~s~--------llp~~a~mf~ 863 (1189)
T KOG2041|consen 801 NIGETFAEMMEWEEAAKYYSYCG------DT---ENQIECLYRLELFGELEVLARTLPEDSE--------LLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc------ch---HhHHHHHHHHHhhhhHHHHHHhcCcccc--------hHHHHHHHHH
Confidence 88888888888888888886532 11 1345666666677766666655554322 3556777788
Q ss_pred hcCChhHHHHHHHHH
Q 003946 338 KFGDLNSASKMVLEM 352 (784)
Q Consensus 338 ~~g~~~~A~~~~~~m 352 (784)
+.|.-++|.+.|-+.
T Consensus 864 svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRR 878 (1189)
T ss_pred hhchHHHHHHHHHhc
Confidence 888888887766443
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.31 E-value=0.063 Score=49.47 Aligned_cols=63 Identities=11% Similarity=-0.054 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDARSAGIQL--DASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
..|..+...+...|++++|...|++.......+ ...+|..+-..+...|+.++|+..+++...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555555554332111 123455555555555555555555555544
No 185
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.27 E-value=0.2 Score=44.38 Aligned_cols=91 Identities=5% Similarity=-0.018 Sum_probs=52.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 456 KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE 535 (784)
Q Consensus 456 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 535 (784)
.+-.-+...|++++|..+|+....-+ +-+..-|-.|--+|-..|++++|...|........ -|...+-.+..++..
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 34444556666666666666665554 33333444455555556666666666666665542 355555556666666
Q ss_pred cCChHHHHHHHHHHH
Q 003946 536 ANRPREVTALLRDAR 550 (784)
Q Consensus 536 ~g~~~~A~~~~~~m~ 550 (784)
.|+.+.|.+-|+...
T Consensus 116 lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 116 CDNVCYAIKALKAVV 130 (157)
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666666666554
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.23 E-value=0.023 Score=42.42 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=21.3
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 621 (784)
+.+.|++++|+..|++..+.. |.+...+..+..++...|++++|...|+.+.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444433 3333334444444444444444444444333
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.14 E-value=0.022 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=8.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003946 636 VIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 636 li~~~~~~g~~~~A~~~~~~m~ 657 (784)
+..+|.+.|++++|.++++++.
T Consensus 31 la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHHCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.15 Score=48.36 Aligned_cols=61 Identities=5% Similarity=0.010 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
.++++..+...|.+.-....++++.+...+.++.....|...-.+.|+.+.|...|++..+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555566666666677776665555666666777777777777777777776643
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.09 E-value=0.8 Score=46.27 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--H
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQ---VSHDDA-ALGHVITLCISLGWLDQAHDLLDEMHLA--GVRAS--S 523 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~--~ 523 (784)
..+..+...+.+.|++++|.++|++....... ...+.. .|...+-.+...|++..|.+.|+..... ++..+ .
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 35566777788888888888888887654310 011121 2233334555667888888888777644 23222 3
Q ss_pred HHHHHHHHHHHHc--CChHHHHHHHHHHH
Q 003946 524 SVYASLLKAYIEA--NRPREVTALLRDAR 550 (784)
Q Consensus 524 ~~~~~li~~~~~~--g~~~~A~~~~~~m~ 550 (784)
.....||.+|-.. ..+..|..-|+.+.
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3445556665432 23555555555554
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.02 E-value=0.032 Score=42.14 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=24.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 500 SLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 500 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+.|++++|.++|+.+.... +-|...+-.+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555554442 114444444555555555555555555555443
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.98 E-value=0.35 Score=48.96 Aligned_cols=302 Identities=15% Similarity=0.091 Sum_probs=167.2
Q ss_pred hHHHHHH--HhhhcCChhHHHHHHHhhhhCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHH--HHhh---cCCChh
Q 003946 255 TFNIALA--GCLLFETTRKAEQLLDIMPRIGVKADS----NLLIIMAHIYERNGRREELRKLQRH--IDEA---VNLSDI 323 (784)
Q Consensus 255 ~~~~ll~--~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~l~~~--~~~~---~~~~~~ 323 (784)
++...+. -+|+.|+.+....+|+..++.|- -|. .+|..|.++|.-.+++++|.+.+.. ...+ +.....
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 4444443 36899999999999999999883 344 4577778888888999999987644 1111 111111
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccc
Q 003946 324 QFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHI 403 (784)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (784)
. +...|-+.+--.|.+++|+....+-..-...--..+.++..+.+. ..+...--.|.....++..
T Consensus 96 K---ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNl-----gnvYhakGk~~g~~~pee~------- 160 (639)
T KOG1130|consen 96 K---SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNL-----GNVYHAKGKCTGLEAPEEK------- 160 (639)
T ss_pred c---ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhh-----hhhhhhcccccCCCChhhc-------
Confidence 0 233455555667888888776655443221111111211111100 0000000011111111100
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HH
Q 003946 404 LSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKA----EK 479 (784)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~ 479 (784)
.....++..++............+.+.. +.-..--..|..|-+.|--.|+++.|+...+.- ++
T Consensus 161 ------------g~f~~ev~~al~~Av~fy~eNL~l~~~l-gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e 227 (639)
T KOG1130|consen 161 ------------GAFNAEVTSALENAVKFYMENLELSEKL-GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE 227 (639)
T ss_pred ------------ccccHHHHHHHHHHHHHHHHHHHHHHHh-hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH
Confidence 1112334444444333322222222110 000111245666777777778999888765442 22
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--
Q 003946 480 ENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL----AGV-RASSSVYASLLKAYIEANRPREVTALLRDARSA-- 552 (784)
Q Consensus 480 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 552 (784)
-|. -...-..+..+.+++.-.|+++.|.+.|..-.. .|- .......-+|.+.|.-..++++|+.++.+=...
T Consensus 228 fGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 228 FGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 231 122334577788899999999999998876542 221 123455667888888888899999988764321
Q ss_pred ---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 553 ---GIQLDASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 553 ---g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
...-....+-+|-.+|...|..++|+.+.+.-.+
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1122456788889999999999999887765443
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.98 E-value=0.05 Score=41.18 Aligned_cols=60 Identities=13% Similarity=0.064 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC-cHHHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH-EAGLMAKLLQEV 620 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~ 620 (784)
.+|..+-..+...|++++|+..|++..+.. |.+...|..+..++...| ++++|.+.++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444444444444444444444444433 344444444444444444 344444444433
No 193
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.96 E-value=0.12 Score=44.38 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKE-------------NLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL- 516 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 516 (784)
..++..+|-++++.|+.+....+++..-.- +.+..|+..+..+++.+|+..|++..|.++.+...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 456778888888888888887777664211 112344444444444444444444444444444332
Q ss_pred cCCCCCHHHHHHHHH
Q 003946 517 AGVRASSSVYASLLK 531 (784)
Q Consensus 517 ~g~~~~~~~~~~li~ 531 (784)
.+++.+..+|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 233333444444443
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.78 E-value=1.4 Score=39.76 Aligned_cols=135 Identities=13% Similarity=0.005 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHH
Q 003946 555 QLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWN 634 (784)
Q Consensus 555 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~ 634 (784)
.|++..--.|..+..+.|+..+|...|++.. .|+...+....-.+.++....++...|...++.+.+-++-..+..+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 5777777788888999999999999998876 466667777777888888888888888888888877553222222344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003946 635 NVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMK 693 (784)
Q Consensus 635 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~ 693 (784)
.+...|...|+...|+.-|+...+. -|+...-...-.-+.+.| +.+++..-+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qg-r~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQG-RLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhc-chhHHHHHHHHHH
Confidence 5667778888888888888887773 555443333333345556 6666555444443
No 195
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.74 E-value=1.1 Score=38.03 Aligned_cols=138 Identities=14% Similarity=0.211 Sum_probs=77.2
Q ss_pred cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003946 571 QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAE 650 (784)
Q Consensus 571 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 650 (784)
.|.+++..++..+.... .+..-++-++--....-+-+-..+.++.+-.-..+.|-. -...+|.+|++.|.
T Consensus 15 dG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~----- 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK----- 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT------
T ss_pred hchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc-----
Confidence 46666666766666553 223345555444444445555555566655543221111 12334444444432
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003946 651 KALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAM 730 (784)
Q Consensus 651 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 730 (784)
+..-+...+.+....| +-|.-.++...+.+ +-.+++...-.+..+|.+-|...++.+++++
T Consensus 85 -------------~se~vD~ALd~lv~~~-kkDqLdki~~~l~k-----n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 85 -------------LSEYVDLALDILVKQG-KKDQLDKIYNELKK-----NEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT--HHHHHHHHHHH----------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHhc-cHHHHHHHHHHHhh-----ccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3344456677788888 88888888888764 3457888888888999999999999999999
Q ss_pred HHhCCCC
Q 003946 731 MEEGKMF 737 (784)
Q Consensus 731 m~~~g~~ 737 (784)
.-++|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 8888864
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=4.5 Score=44.78 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGY 675 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 675 (784)
+.+--+.-+...|+..+|.++-.+.+- ||-..|--=+.+++..+++++-+++-+.+. .+.-|.-+..+|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 455556667777888888877766653 677788888899999999988777666554 256677789999
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMM 731 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 731 (784)
.+.| +.++|.+++-+... .. -.+.+|.+.|++.+|.++--+-
T Consensus 755 ~~~~-n~~EA~KYiprv~~---------l~----ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 755 LKQG-NKDEAKKYIPRVGG---------LQ----EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred Hhcc-cHHHHhhhhhccCC---------hH----HHHHHHHHhccHHHHHHHHHHh
Confidence 9999 99999888765533 11 4678888999988888765443
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.60 E-value=3.1 Score=42.28 Aligned_cols=253 Identities=13% Similarity=0.046 Sum_probs=164.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPRE 541 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 541 (784)
.-.|+++.|.+-|+.|.... ..-.--...|.-..-+.|+.+.|+++-+..-+.- +--...+...+...|..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~dP---EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDDP---ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcCh---HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 34689999999999997432 1111122333333447888888888887776553 2235678889999999999999
Q ss_pred HHHHHHHHHHcC-CCCCHH--HHHHHHHHHHH---cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHH
Q 003946 542 VTALLRDARSAG-IQLDAS--CYEALLQSKIV---QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAK 615 (784)
Q Consensus 542 A~~~~~~m~~~g-~~p~~~--t~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 615 (784)
|+++++.-++.. +.+|+. .-..|+.+-.. .-+...|...-.+..+. .|+-.-.-..-..++.+.|++.++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 999999775432 345543 23344443332 23556666665555443 24433345555678889999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003946 616 LLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL-GHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMK 693 (784)
Q Consensus 616 ~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~ 693 (784)
+++.+-+.. .+|++ + .+..+.+.|+. ++.-+++.... .++|| ...-..+..+-...| ++..|..--+...
T Consensus 285 ilE~aWK~e-PHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~-e~~~ARa~Aeaa~ 356 (531)
T COG3898 285 ILETAWKAE-PHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAG-EFSAARAKAEAAA 356 (531)
T ss_pred HHHHHHhcC-CChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc-chHHHHHHHHHHh
Confidence 999988765 44554 2 23345666653 33333332221 15665 455556677777778 8888877776665
Q ss_pred hcccCCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 003946 694 SFASSTSMNFDEELLDSVLYTFVRG-GFFARANEVVAMMEEG 734 (784)
Q Consensus 694 ~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~ 734 (784)
. ..|....|-.|.+.-... |+-.++..++-+..+.
T Consensus 357 r------~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 R------EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred h------hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4 678888888888877666 9999999998888764
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.54 E-value=0.11 Score=46.57 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMH-----LAGVRASSSVY 526 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~~~ 526 (784)
....++..+...|++++|..+...+.... +.|...|..+|.+|...|+...|.++|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 55667778888999999999999998887 7788889999999999999999999998875 35888877654
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.50 E-value=0.085 Score=39.89 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLG-WLDQAHDLLDEMHL 516 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 516 (784)
+.+|..+...+.+.|++++|+..|.+..+.. +.+...|..+..+|.+.| ++++|.+.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666666677777777777777766655 445556666666666666 56666666666554
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.49 E-value=2.4 Score=40.35 Aligned_cols=61 Identities=11% Similarity=-0.017 Sum_probs=39.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003946 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA 517 (784)
Q Consensus 457 li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 517 (784)
....+.+.|++.+|...|+.+....+.-+--....-.+..++.+.|+++.|...++...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445667888888888888887664211222234455667777888888888888887765
No 201
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.46 E-value=0.21 Score=48.62 Aligned_cols=86 Identities=8% Similarity=-0.043 Sum_probs=44.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHH
Q 003946 534 IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLM 613 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 613 (784)
.+.+++.+|+..|.+.++.. .-|.+-|..=..+|.+.|..+.|++-.+...... |....+|..|..+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHHHH
Confidence 34455555555555554432 1244444445555555555555555554444432 44445555555555555555555
Q ss_pred HHHHHHHHh
Q 003946 614 AKLLQEVKE 622 (784)
Q Consensus 614 ~~~~~~~~~ 622 (784)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 555555554
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.45 E-value=0.067 Score=39.91 Aligned_cols=55 Identities=11% Similarity=-0.034 Sum_probs=29.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 296 HIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 296 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
..+.+.|++++|.+.|+.+.+..+.+.. .|..+..++.+.|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPE----AWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHH----HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455556666666666665554322222 455555666666666666666655554
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.34 E-value=0.61 Score=50.01 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=50.7
Q ss_pred hhHHHHHHHhhhcCChh--HHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 254 NTFNIALAGCLLFETTR--KAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 254 ~~~~~ll~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
.-+++.=.+|.+.++.. +-+.-+++|++.|-.|+..... ..|+-.|.+.+|.++|.+--. -|.
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~~G~------------enR 663 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKRSGH------------ENR 663 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHHcCc------------hhh
Confidence 35666677777766554 3444567788888778876654 347778899999888865321 233
Q ss_pred HHHHHHhcCChhHHHHHH
Q 003946 332 LLSCHLKFGDLNSASKMV 349 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~ 349 (784)
.+.+|-....++.|.++.
T Consensus 664 AlEmyTDlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 664 ALEMYTDLRMFDYAQEFL 681 (1081)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444555555555555544
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.27 E-value=4.1 Score=41.67 Aligned_cols=126 Identities=12% Similarity=0.138 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGY 675 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 675 (784)
+.+..+.-|...|....|.++-.+.+ + |+-.-|-..|.+|+..+++++-.++... +-++..|..++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 45555667777888777777655553 3 7888899999999999999887765432 12457888899999
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKT 753 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 753 (784)
...| +.++|..+..++. +..-+..|.+.|++.+|.+.--+.+ |......+.....++
T Consensus 248 ~~~~-~~~eA~~yI~k~~--------------~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 248 LKYG-NKKEASKYIPKIP--------------DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGN 304 (319)
T ss_pred HHCC-CHHHHHHHHHhCC--------------hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCC
Confidence 9988 8888888776632 2456778889999999988766654 666666666544443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.24 E-value=0.39 Score=47.49 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDA----SCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
|...+..+.+.|++++|...|+...+. .|+. ..+-.+...|...|++++|...|+.+.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333334445555555555555443 2322 2333444444444555555555444443
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.18 Score=49.38 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=98.3
Q ss_pred ccccccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhc
Q 003946 79 MGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEG 158 (784)
Q Consensus 79 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 158 (784)
+...+..+|.|..-|..|-+.|...|+++.|..-|.+..+..+ +++..+..+-.++..+.+...-.++..++.++...
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 3444566788999999999999999999999999999888653 44556666667777666677777888999998886
Q ss_pred ccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHH
Q 003946 159 KQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILA 208 (784)
Q Consensus 159 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 208 (784)
. ..++....+|...+...|++.+|...|+.|.+. .|....+..+|.
T Consensus 223 D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 223 D--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred C--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 2 235666777888999999999999999999986 455666777775
No 207
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.21 E-value=1.7 Score=36.89 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR 520 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 520 (784)
......++.+...|.-++..+++.++.+.+ .+++...-.+-.||.+.|+..++.+++.+..+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~---~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE---EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344556777788888888888888877655 667777777888888888888888888888888754
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.18 E-value=0.3 Score=48.32 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=78.6
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHH
Q 003946 253 TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADS----NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQF 328 (784)
Q Consensus 253 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 328 (784)
...|...+....+.|++++|+..|+.+++.- |+. ..+--+...|...|++++|...|+.+.+..+.+... ...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~-~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA-ADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hHH
Confidence 3457777766677899999999999999853 554 467788899999999999999999998763332211 114
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 003946 329 YNCLLSCHLKFGDLNSASKMVLEMLQRA 356 (784)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 356 (784)
+-.+...|.+.|+.++|...|++..+..
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6667778889999999999999988753
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.14 E-value=0.1 Score=40.00 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=8.4
Q ss_pred HHHcCChhHHHHHHHHhHh
Q 003946 568 KIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~ 586 (784)
|.+.+++++|+++++.+..
T Consensus 5 ~~~~~~~~~A~~~~~~~l~ 23 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALE 23 (73)
T ss_pred HHhCCCHHHHHHHHHHHHH
Confidence 3344444444444444444
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.06 E-value=4.6 Score=41.10 Aligned_cols=201 Identities=11% Similarity=-0.024 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHH--HHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDA--ALGHVITLCIS---LGWLDQAHDLLDEMHLAGVRASSSV 525 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~--~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~ 525 (784)
.-.+.+.+...+..|+++.|+++++.-+.... +.++.. .-..|+.+-.. .-+...|...-.+..+ +.||..-
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvP 264 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKV-IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVP 264 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccch
Confidence 36788899999999999999999998776542 455553 23334433322 2345556655554444 4566443
Q ss_pred H-HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc-CCCCCcHHHHHHHHHH
Q 003946 526 Y-ASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES-KIPRSGHQEFEMLVKG 603 (784)
Q Consensus 526 ~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~~ll~~ 603 (784)
- ..-..+|.+.|++.++-.+++.+.+....|+. +. +..+.+.| +.++.-++...+. ...|++....-++..+
T Consensus 265 aav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~a 338 (531)
T COG3898 265 AAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEA 338 (531)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 2 33457789999999999999999988555543 22 22233444 3444444443331 2447777777888888
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK-RLMQDAEKALKRMRSLGHLP 663 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p 663 (784)
-...|++..|..--+.... ..|....|-.|.+.-... |+-.++...+.+-.+.--.|
T Consensus 339 Alda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 339 ALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 8888888877766666554 446777787777766544 88888888888877653333
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.05 E-value=0.15 Score=45.70 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc-CCCCCCCHHHHH
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFAS-STSMNFDEELLD 709 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~-~~~~~p~~~~~~ 709 (784)
....++..+...|++++|..+.+++... .| |...|..+|.+|...| +...|.+.|+.+.+... +.|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g-~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQG-RRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4555666666677777777777777664 33 5666667777777777 77777777766654333 346777666543
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.03 E-value=0.18 Score=39.25 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 289 NLLIIMAHIYERNGRREELRKLQRHIDEA---VNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
.+++.+...|.+.|++++|...|++..+. ..+.......+++.+..+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46677777788888888888887776543 1212112234688888888888888888888877655
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=3.4 Score=39.60 Aligned_cols=133 Identities=8% Similarity=0.052 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL- 530 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li- 530 (784)
...+.++..+.-.|.+.-....+.+..+.. -+.++.....+++.-.+.|+.+.|...|+...+..-+.|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~--~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYY--PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhC--CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 445667777777788888888999988876 36677778888888889999999999999887654445555555444
Q ss_pred ----HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 531 ----KAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 531 ----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
..|.-++++..|...|.++.... ..|...-|.-.-+..-.|+...|++..+.|...
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555678888888888887654 234555454433444458888898888888765
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.81 E-value=0.079 Score=41.30 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 666 QTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSM-NFD-EELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 666 ~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
.+|+.+...|...| ++++|+..+++..+.....|- .|+ ..++..+...|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELG-RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666 777777666666554222221 122 4456677777777777777777776654
No 215
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.80 E-value=0.24 Score=47.54 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=74.1
Q ss_pred CCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHH
Q 003946 178 CGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFN 257 (784)
Q Consensus 178 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~ 257 (784)
.+.++--...+..|.+.|+..|..+|+.||..+-+. .+ .|..+ +-
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg---------------------kf-------------iP~nv-fQ 129 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG---------------------KF-------------IPQNV-FQ 129 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc---------------------cc-------------ccHHH-HH
Confidence 355666666788899999999999999999866552 33 33222 22
Q ss_pred HHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhh
Q 003946 258 IALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGR-REELRKLQRHIDEA 317 (784)
Q Consensus 258 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~ 317 (784)
.+.-.|- ..-.-++.++++|..+|+.||..+--.|++++++.+- ..+..++.-.|.+-
T Consensus 130 ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPkf 188 (406)
T KOG3941|consen 130 KVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPKF 188 (406)
T ss_pred HHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhhh
Confidence 2222332 2345689999999999999999999999999999886 44555666666653
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=1.9 Score=42.41 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN---RPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
+-|...|..|...|...|+.+.|..-|....+.. .+|...+..+..++.... ...++..+|+++.+.. .-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3344445555555555555555555555444432 223444444433333221 1334445555544432 1133333
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 562 EALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
.-|-..+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 33444444455555555555554443
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.51 E-value=4.5 Score=38.46 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=43.9
Q ss_pred HHHhhhcCChhHHHHHHHhhhhCCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCh
Q 003946 260 LAGCLLFETTRKAEQLLDIMPRIGV--KADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSD 322 (784)
Q Consensus 260 l~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~ 322 (784)
...+.+.|++.+|+..|+.+....- +--....-.++.++-+.|+++.|...++...+..+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 3445678999999999999987521 11124556778889999999999999999888744433
No 218
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=7.7 Score=39.94 Aligned_cols=167 Identities=10% Similarity=-0.072 Sum_probs=102.6
Q ss_pred CCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003946 449 PTEKIYIKLV-KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCI--SLGWLDQAHDLLDEMHLAGVRASSSV 525 (784)
Q Consensus 449 p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~ 525 (784)
|...+|-.+- .++...|++++|...-....+.. ..+. +..++++.+ -.++.+.|...|++-++.+ |+-..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~ 238 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQK 238 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhh
Confidence 3334444433 24567788888888777776655 2222 444554443 4667788888888777654 43322
Q ss_pred HHH-------------HHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC
Q 003946 526 YAS-------------LLKAYIEANRPREVTALLRDARSA---GIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI 589 (784)
Q Consensus 526 ~~~-------------li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 589 (784)
-.. =-+-..+.|++..|.+.+.+.+.. .+.|++..|........+.|++++|+.--++..+..
T Consensus 239 sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD- 317 (486)
T KOG0550|consen 239 SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID- 317 (486)
T ss_pred HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-
Confidence 211 123356788899999999888654 344566667777777888899999988887766532
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003946 590 PRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ 624 (784)
Q Consensus 590 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 624 (784)
+.-...|..-..++...++|++|.+-|+...+..
T Consensus 318 -~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 318 -SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2222222223334455677888888777766544
No 219
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.20 E-value=2 Score=37.96 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 493 HVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA 536 (784)
Q Consensus 493 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 536 (784)
.+|..+...+.......+++.+...+. .+...+|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 355555555556666666666555542 4555555666666554
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.11 E-value=6.5 Score=41.65 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQ-LDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
..+-..|..++-+.|+.++|.+.|.+|.+.... -+......|+.++...+...++..++.+--+...+......|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344445666666778888888888777653211 1234566777777777777777777777554444444455566554
Q ss_pred H
Q 003946 602 K 602 (784)
Q Consensus 602 ~ 602 (784)
-
T Consensus 339 L 339 (539)
T PF04184_consen 339 L 339 (539)
T ss_pred H
Confidence 3
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.93 E-value=3.5 Score=44.60 Aligned_cols=213 Identities=13% Similarity=0.191 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTK--ELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
.++..=.+|.+..+.. +.+.-+++|+++| -.|+... +...|+-.|++.+|-++|.+ .|.. |--+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg--e~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAl 665 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRG--ETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRAL 665 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcC--CCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHH
Confidence 4455556676665543 4555567788888 3688763 33556667889998888864 3322 1223
Q ss_pred HHHHHcCChHHHHHHH------------HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH-----h-H--hcCCC
Q 003946 531 KAYIEANRPREVTALL------------RDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKE-----M-K--ESKIP 590 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~------------~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~-----m-~--~~~~~ 590 (784)
.+|.....++.|.+++ ++-.+ ...|..-=.+....+...|+.++|..+.-+ | . .+.+.
T Consensus 666 EmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 666 EMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD 743 (1081)
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc
Confidence 3444444444444333 22110 000111111223344455666666554321 1 1 11122
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----
Q 003946 591 RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ---- 666 (784)
Q Consensus 591 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 666 (784)
..+..+...+..-+.+...+..|.++|.+|-. ..++++.....+++++|..+-++.++ +.||..
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pya 811 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYA 811 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHH
Confidence 33344555555556666777788888888864 35778888999999999999988776 456543
Q ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 667 -------TFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 667 -------~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
-|...-.||.++| +-.+|.++++++..
T Consensus 812 qwLAE~DrFeEAqkAfhkAG-r~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 812 QWLAENDRFEEAQKAFHKAG-RQREAVQVLEQLTN 845 (1081)
T ss_pred HHhhhhhhHHHHHHHHHHhc-chHHHHHHHHHhhh
Confidence 2344446788888 88888888888865
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.91 E-value=1.2 Score=46.79 Aligned_cols=63 Identities=13% Similarity=0.012 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 629 GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ----TFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 629 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+...|+.+..+|.+.|++++|+..|++.++ +.|+.. +|..+..+|...| +.++|...+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LG-r~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYRE-EGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 467899999999999999999999999887 999853 5888999999999 99999999999887
No 223
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.73 E-value=0.46 Score=45.66 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN----------------RPREVTALLRDARSAGIQLDASCYEALL 565 (784)
Q Consensus 502 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~g~~p~~~t~~~li 565 (784)
+.++-....++.|.+.|+..|..+|+.|++.+-+-. +-+=+++++++|...|+.||-.+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 445555555666666666666666666666543321 2234678889999999999999999999
Q ss_pred HHHHHcCCh
Q 003946 566 QSKIVQKDT 574 (784)
Q Consensus 566 ~~~~~~g~~ 574 (784)
+++++.+..
T Consensus 166 n~FGr~~~p 174 (406)
T KOG3941|consen 166 NAFGRWNFP 174 (406)
T ss_pred HHhcccccc
Confidence 998876643
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.63 E-value=0.54 Score=35.87 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=27.1
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA 517 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 517 (784)
.|.+.+++++|.++++.+...+ +.+...+......+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555443 333444444444555555555555555555543
No 225
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=10 Score=39.05 Aligned_cols=231 Identities=10% Similarity=-0.004 Sum_probs=127.0
Q ss_pred CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 486 HDDAALGHVI-TLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY--IEANRPREVTALLRDARSAGIQLDASCYE 562 (784)
Q Consensus 486 p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 562 (784)
|.-.++-.+- ..+.-.|+.++|..+--.+++.. ..-.+...+++. --.++.+.|..-|++-+.. .||-..-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHH
Confidence 4444444433 33446778888887777776653 222333344333 2356778888888877654 34443322
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHH
Q 003946 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQR--IDCGVHDWNNVIHFF 640 (784)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~p~~~~y~~li~~~ 640 (784)
.+- .-.+.++.+.+.| .-..+.|++..|.+.+.+....++ ..|+...|-......
T Consensus 241 ~~~----------~~~k~le~~k~~g-------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~ 297 (486)
T KOG0550|consen 241 SAS----------MMPKKLEVKKERG-------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN 297 (486)
T ss_pred hHh----------hhHHHHHHHHhhh-------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence 211 1122333344433 234567788888888887776543 456677788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHH--HHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh
Q 003946 641 CKKRLMQDAEKALKRMRSLGHLPNAQT-FHSMVT--GYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVR 717 (784)
Q Consensus 641 ~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~--a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~ 717 (784)
.+.|++++|+.--++..+. |..- ...+.+ ++...+ +|++|.+-+++..+.... .-...++--...++-+
T Consensus 298 ~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le-~~e~AV~d~~~a~q~~~s---~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 298 IRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALE-KWEEAVEDYEKAMQLEKD---CEIRRTLREAQLALKK 369 (486)
T ss_pred cccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHH
Confidence 9999999999988888763 4322 222222 344456 788888888776652211 1122333333334433
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 003946 718 GGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKT 753 (784)
Q Consensus 718 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 753 (784)
..+ ..=.+++---......|+...|.-+-...|-+
T Consensus 370 SkR-kd~ykilGi~~~as~~eikkayrk~AL~~Hpd 404 (486)
T KOG0550|consen 370 SKR-KDWYKILGISRNASDDEIKKAYRKLALVHHPD 404 (486)
T ss_pred hhh-hhHHHHhhhhhhcccchhhhHHHHHHHHhCCC
Confidence 322 22233333333333455666666554444433
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.37 E-value=3.7 Score=44.73 Aligned_cols=107 Identities=10% Similarity=0.065 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-----HHHHHHHHHHHHH----cCChH
Q 003946 471 THFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG-VRAS-----SSVYASLLKAYIE----ANRPR 540 (784)
Q Consensus 471 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~-----~~~~~~li~~~~~----~g~~~ 540 (784)
..+|.-+..- +||. +..+++..+-.||-+.+.+.+.+-.+.+ +.-. ...|...+..++. ....+
T Consensus 177 ~G~f~L~lSl---LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 177 FGLFNLVLSL---LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHh---CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 3445555433 3443 3467777777788888888887766533 2211 1233333333333 34566
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCChhHHHHHHHHhH
Q 003946 541 EVTALLRDARSAGIQLDASCYEALLQ-SKIVQKDTPGALHLFKEMK 585 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~~~~~m~ 585 (784)
.|.++++.+.+. -|+...|...-. .+...|++++|++.|++..
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 777777777765 566666655443 3345677777777777654
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.35 E-value=0.94 Score=47.44 Aligned_cols=65 Identities=17% Similarity=0.012 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003946 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGH---QEFEMLVKGCAQNHEAGLMAKLLQEVKEG 623 (784)
Q Consensus 557 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 623 (784)
+...|+.+-.+|...|++++|+..|++..+.. |++. .+|..+..+|.+.|+.++|.+.++...+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677777778888888888888887777654 5544 34777777777777777777777777663
No 228
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.34 E-value=10 Score=38.38 Aligned_cols=118 Identities=11% Similarity=0.146 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCC-
Q 003946 610 AGLMAKLLQEVKEGQRI--DCGVHDWNNVIHFFCKKRL----MQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGK- 681 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~--~p~~~~y~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~- 681 (784)
...+..+|+.|++..+. .++-..+..|+.. ..++ .++++.+|+.+.+.|+..+ ..-+.+-+-++......
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 44556666666665542 3455566666554 3333 3567778888888887774 32333334444432202
Q ss_pred -HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHh
Q 003946 682 -YTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGF----FARANEVVAMMEE 733 (784)
Q Consensus 682 -~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~ 733 (784)
...+..+++.+++ .++++...+|..+.-...-.+. .++..++.+...+
T Consensus 197 ~v~r~~~l~~~l~~----~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 197 KVARVIELYNALKK----NGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKE 249 (297)
T ss_pred HHHHHHHHHHHHHH----cCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 2356677777777 6788777777766433332222 3344444444443
No 229
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.31 E-value=4.9 Score=35.46 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
...+|..+.+.+....+..+++.+...+ ..+...++.++..|++.+ .+...+.+.. . .+.+-....+..|
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~---~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c 79 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN---SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLC 79 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC---ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHH
Confidence 3467888888899999999999998887 467778999999999864 4444444442 1 2334444567777
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 534 IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ-KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
.+.+.++++.-++.++.. |...+..+... ++.+.|++++.+ +.++..|..++..|.
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~-------~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK-------QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh-------CCCHHHHHHHHHHHH
Confidence 777777777777766631 11222223333 667777776664 123445555555443
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.25 E-value=3.8 Score=44.66 Aligned_cols=132 Identities=20% Similarity=0.150 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHH-----HHH----HcCCHHHHHHHHHHHHHcCCCCCHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT-----LCI----SLGWLDQAHDLLDEMHLAGVRASSS 524 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~-----~~~----~~g~~~~a~~~~~~m~~~g~~~~~~ 524 (784)
...+++...-.|+-+.+++.+.+..+.+. +.-...+...+.- .++ ...+.+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~-i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSEN-IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 44677777788888888888888766442 3333322222211 111 134567788888888876 46766
Q ss_pred HHHHH-HHHHHHcCChHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 525 VYASL-LKAYIEANRPREVTALLRDARSAG--I-QLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 525 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
.|... ...+...|++++|.+.|++..... . +.....+--+.-.+.-.+++++|.+.|..+.+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 66443 344566788888888888754210 0 1112223333444555566666666666666543
No 231
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.19 E-value=10 Score=38.10 Aligned_cols=165 Identities=10% Similarity=0.091 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcCCh---hHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 003946 559 SCYEALLQSKIVQKDT---PGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNN 635 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~ 635 (784)
.++..++.+|...+.. ++|.++++.+.... |+.+..+..-+..+.+.++.+.+.+.+..|...... ....+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~--~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH--SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc--ccchHHH
Confidence 4566777788776654 45666777775554 344557777788888888899999999988876431 2234555
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHH-H-HHHHH---HHHcC-----CCHHHHHHHHHHHHhcccCCCCC
Q 003946 636 VIHFF---CKKRLMQDAEKALKRMRSLGHLPNAQTF-H-SMVTG---YAAIG-----GKYTEVTELWGEMKSFASSTSMN 702 (784)
Q Consensus 636 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~-~ll~a---~~~~g-----~~~~~a~~~~~~m~~~~~~~~~~ 702 (784)
++..+ .... ...|...+..+....+.|....| . .++.- ....+ +.++....+++.+.+. .+.+
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~---~~~~ 236 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS---LGKQ 236 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH---hcCC
Confidence 55555 3333 45677777777666566665411 1 11111 11111 0144555555544332 2233
Q ss_pred CCHHHHHHH-------HHHHHhcCChHHHHHHHHHH
Q 003946 703 FDEELLDSV-------LYTFVRGGFFARANEVVAMM 731 (784)
Q Consensus 703 p~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m 731 (784)
.+..+-.++ ...+.+++++++|.++++--
T Consensus 237 ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 237 LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 343333322 34456788999999998744
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=93.18 E-value=6.9 Score=41.33 Aligned_cols=61 Identities=8% Similarity=-0.058 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003946 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE 619 (784)
Q Consensus 557 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 619 (784)
|......+-.+....++.+.|...|++....+ |+...+|......+...|+.++|.+.++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33443333333344444444444444444433 34333343333334444444444444444
No 233
>PRK11906 transcriptional regulator; Provisional
Probab=93.08 E-value=4.9 Score=42.42 Aligned_cols=114 Identities=10% Similarity=0.091 Sum_probs=81.6
Q ss_pred ChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003946 573 DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKA 652 (784)
Q Consensus 573 ~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~ 652 (784)
+..+|.++-+...+.+ +.|+.....+..+....++++.|..+|+.....++..++...|..++ ..-+|+.++|.+.
T Consensus 319 ~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~--~~~~G~~~~a~~~ 394 (458)
T PRK11906 319 AAQKALELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV--HFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH--HHHcCCHHHHHHH
Confidence 4556777777777766 78888888888888999999999999999998665444444444444 4667999999999
Q ss_pred HHHHHhCCCCCCH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 653 LKRMRSLGHLPNA---QTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 653 ~~~m~~~g~~p~~---~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+++..+ ..|.. ......++.|+..+ .++|..++-+-.+
T Consensus 395 i~~alr--LsP~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 435 (458)
T PRK11906 395 IDKSLQ--LEPRRRKAVVIKECVDMYVPNP--LKNNIKLYYKETE 435 (458)
T ss_pred HHHHhc--cCchhhHHHHHHHHHHHHcCCc--hhhhHHHHhhccc
Confidence 999665 35643 33334455666655 7788877755433
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.84 E-value=19 Score=42.48 Aligned_cols=105 Identities=19% Similarity=0.145 Sum_probs=56.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcH
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEA 610 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 610 (784)
+.+...+.+++|.-.|+..-+ ..--+.+|-..|+|++|+.+..++.... ..-..+-..|..-+...++.
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~--de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK--DELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHcccc
Confidence 333445666666666654421 1123556667777777777777664321 00011224566666667766
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 611 GLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKR 655 (784)
Q Consensus 611 ~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 655 (784)
-+|-++..+.... +.--+..|++...+++|..+...
T Consensus 1016 ~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1016 YEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred hhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 6666666655532 23344555666666666665443
No 235
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.57 E-value=3.1 Score=39.43 Aligned_cols=213 Identities=13% Similarity=0.035 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHH
Q 003946 91 AKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIY 170 (784)
Q Consensus 91 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 170 (784)
..|-.-..+|....+++.|-.-+.+..+ +...+...|+ + .+..++|.-++.++-+. .--.+.|..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh----A------AKayEqaamLake~~kl----sEvvdl~eK 96 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH----A------AKAYEQAAMLAKELSKL----SEVVDLYEK 96 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH----H------HHHHHHHHHHHHHHHHh----HHHHHHHHH
Confidence 3444455566666777777666655443 1111222221 1 12233444444444332 112344566
Q ss_pred HHHHHhhCCCCccHHHHHHHHhhc--CCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccC
Q 003946 171 LSLGLSKCGLPVPASTILRKLVAT--EQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIA 248 (784)
Q Consensus 171 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~ 248 (784)
....|..+|.++.|--.+++.-+. .+.|+... +.+..++.+++ .=+.
T Consensus 97 As~lY~E~GspdtAAmaleKAak~lenv~Pd~Al-------------------qlYqralavve--~~dr---------- 145 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKALENVKPDDAL-------------------QLYQRALAVVE--EDDR---------- 145 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHH-------------------HHHHHHHHHHh--ccch----------
Confidence 778899999999998888875432 35555432 55566666665 2110
Q ss_pred CCCchhhHHHHHHHhhhcCChhHHHHHHHhhh----hCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChh
Q 003946 249 MKPNTNTFNIALAGCLLFETTRKAEQLLDIMP----RIGVKADS-NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDI 323 (784)
Q Consensus 249 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~----~~g~~pd~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 323 (784)
.+--..-+..+-+++.+...+++|-..|..-. +..--++. ..|...|-.|.-..++..|++.++.-...+.....
T Consensus 146 ~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s 225 (308)
T KOG1585|consen 146 DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS 225 (308)
T ss_pred HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh
Confidence 11112245556667778888887765443322 11112333 34556666677778999999999884443222222
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHH
Q 003946 324 QFRQFYNCLLSCHLKFGDLNSASKMVL 350 (784)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (784)
....+...|+.+|- .|+.+++..++.
T Consensus 226 ed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 226 EDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 22226888888885 688887777654
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.49 E-value=6.3 Score=40.84 Aligned_cols=124 Identities=11% Similarity=0.009 Sum_probs=71.7
Q ss_pred HHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcc-cccCccchHHHHHHHHhh---CCCCccH
Q 003946 109 AWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGK-QILLEKEPLIYLSLGLSK---CGLPVPA 184 (784)
Q Consensus 109 A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~---~g~~~~A 184 (784)
..+.+.+|...=..|...+-..++.-+....+..+++....+++.+..... ...-.+.+--....++.+ .|+.++|
T Consensus 122 l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~A 201 (374)
T PF13281_consen 122 LAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKA 201 (374)
T ss_pred HHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHH
Confidence 334444444432234444545555655555678888888888888755410 011122222224556667 8999999
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHhhcCC-CchhhHHHHHHhhhhhc
Q 003946 185 STILRKLVATEQYPPVTAWSAILAHMSLTAP-GAYLAAELILEIGYLFQ 232 (784)
Q Consensus 185 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~~~~~~~~~a~~~~~ 232 (784)
++++..+....-.++..+|..+-..|-..-. +........++|+..+.
T Consensus 202 l~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~ 250 (374)
T PF13281_consen 202 LQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYR 250 (374)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHH
Confidence 9999997766667788888877766643210 01112244666666665
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.30 E-value=3.8 Score=44.01 Aligned_cols=159 Identities=11% Similarity=0.069 Sum_probs=98.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR 538 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 538 (784)
....-.++++++.+....-.--. -.| ..-.+.++.-+-+.|..+.|.++-.+-.. -.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~--~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP--NIP-KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG--G---HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc--cCC-hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCC
Confidence 34456788888777665221111 123 33477788888888988888887654321 2345568888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 618 (784)
++.|.++-++. .+...|..|-......|+++-|.+.|++.. -|..|+-.|.-.|+.+.-.++.+
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHH
Confidence 88888765443 467788999888888899999888887643 36667777777787777777776
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKR 655 (784)
Q Consensus 619 ~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 655 (784)
.....+. +|....++.-.|+.++..+++.+
T Consensus 398 ~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERGD-------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHccC-------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665542 56666667777777777776653
No 238
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.06 E-value=15 Score=37.16 Aligned_cols=132 Identities=9% Similarity=0.177 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCh
Q 003946 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIE--AN----RPREVTALLRDARSAGI---QLDASCYEALLQSKIVQKDT 574 (784)
Q Consensus 504 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~~ 574 (784)
+++...+++.|.+.|+.-+.++|-+..-.... .. ....|..+|+.|++.-. .++...+..|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788888888888777776553333332 22 25678888888877532 2355566666554 22222
Q ss_pred ----hHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHH
Q 003946 575 ----PGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRL--MQD 648 (784)
Q Consensus 575 ----~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~--~~~ 648 (784)
+.+..+|+.+.+.|..+.+. ......++........ ..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~-----------------------------------LQ~LS~iLaL~~~~~~~~v~r 200 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGND-----------------------------------LQFLSHILALSEGDDQEKVAR 200 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcH-----------------------------------HHHHHHHHHhccccchHHHHH
Confidence 34555666666656544332 2222222222222111 457
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 649 AEKALKRMRSLGHLPNAQTFHSMV 672 (784)
Q Consensus 649 A~~~~~~m~~~g~~p~~~~~~~ll 672 (784)
+.++++.+.+.|+++....|..+.
T Consensus 201 ~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 201 VIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHcCCccccccccHHH
Confidence 888899999999888777766543
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.97 E-value=15 Score=36.83 Aligned_cols=152 Identities=10% Similarity=-0.027 Sum_probs=104.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCh
Q 003946 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA---GVRASSSVYASLLKAYIEANRP 539 (784)
Q Consensus 463 ~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~ 539 (784)
-.|+..+|...++++.+.. +.|...+.-.=.+|.-.|+.+.-...++.+... +++-..++-..+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d~---PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY---PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHhC---chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4678888888899998775 778777887888999999999888888888754 2222233334445556688999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC---CCCcHHHHHHHHHHHHhcCcHHHHHHH
Q 003946 540 REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI---PRSGHQEFEMLVKGCAQNHEAGLMAKL 616 (784)
Q Consensus 540 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~ 616 (784)
++|++.-++..+.+ +.|.-.-.++...+-..|+..++.++..+-...-- ....+-.|...+ .+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHH
Confidence 99999988887665 45666777777778888899999887765332110 001111222222 23344789999999
Q ss_pred HHH
Q 003946 617 LQE 619 (784)
Q Consensus 617 ~~~ 619 (784)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 864
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=91.79 E-value=5.3 Score=35.78 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=20.3
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEM 584 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 584 (784)
..|++++|..+|.-+...+. -|..-|..|-.++-..+++++|+..|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444433221 12233333333444444444444444433
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=11 Score=37.31 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=61.8
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRP 539 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 539 (784)
.....|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+...--.........-|..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 4456677777777777766554 2233345556667777777777777777665432111111112223334444444
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 540 REVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 540 ~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
.+...+-.+.-. .| |...-..+...+...|+.++|++.+-.+.+
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443444444333 33 444444555555555666666555444444
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.67 E-value=14 Score=39.38 Aligned_cols=163 Identities=9% Similarity=-0.019 Sum_probs=92.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHH
Q 003946 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREV 542 (784)
Q Consensus 463 ~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 542 (784)
+..+...-++.-++..+. .||-.+.- ++-+--.+..+.++.++|++..+.|- ..+. +.......
T Consensus 180 RERnp~aRIkaA~eALei----~pdCAdAY-ILLAEEeA~Ti~Eae~l~rqAvkAgE----~~lg-------~s~~~~~~ 243 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI----NPDCADAY-ILLAEEEASTIVEAEELLRQAVKAGE----ASLG-------KSQFLQHH 243 (539)
T ss_pred hcCCHHHHHHHHHHHHHh----hhhhhHHH-hhcccccccCHHHHHHHHHHHHHHHH----Hhhc-------hhhhhhcc
Confidence 445555555555555543 34443221 22233345568889988888776541 1111 11000111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 543 TALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 543 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
-..++.+..+...|-...-..+..++-+.|+.++|++.+++|.+..-..+.......|+.++...+.+.++..++.+-.+
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 11122222222233333444566667788999999999999987542223455778889999999999999999988764
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 003946 623 GQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 623 ~~~~~p~~~~y~~li~~~~ 641 (784)
....+.-...|+..+-.+-
T Consensus 324 i~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 324 ISLPKSATICYTAALLKAR 342 (539)
T ss_pred ccCCchHHHHHHHHHHHHH
Confidence 3322233566776554433
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=15 Score=36.22 Aligned_cols=147 Identities=13% Similarity=0.012 Sum_probs=91.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003946 495 ITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDT 574 (784)
Q Consensus 495 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 574 (784)
.......|++.+|..+|+......-. +...--.+..+|...|+.+.|..++..+...--.........=|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34556788999999999988876432 45566678899999999999999999886432122222222233444444444
Q ss_pred hHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 003946 575 PGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRL 645 (784)
Q Consensus 575 ~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~ 645 (784)
.+...+-.+.-. .|++...-..+...+...|+.+.|.+.+-.+..++.-.-|...-..|+..+.-.|.
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 444444443332 26666667777777777777777776655555443333344455666666655553
No 244
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.50 E-value=2.1 Score=42.31 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cccCCCCCCCHHHH
Q 003946 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKS-FASSTSMNFDEELL 708 (784)
Q Consensus 631 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~-~~~~~~~~p~~~~~ 708 (784)
.++..++..+...|+.+.+.+.++++... .| |...|..+|.+|.+.| +...|+..++.+.+ ...+.|+.|.+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g-~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNG-RQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 46788899999999999999999999885 44 7889999999999999 99999999998877 55667888888887
Q ss_pred HHHHHH
Q 003946 709 DSVLYT 714 (784)
Q Consensus 709 ~~li~~ 714 (784)
..+...
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 776666
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.48 E-value=17 Score=36.59 Aligned_cols=102 Identities=17% Similarity=0.072 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTK---ELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYAS 528 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 528 (784)
.++..++.+|...+..+ +|..+++.+....+ -...++..-+..+.+.++.+.+.+++..|...- ......+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~---~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYG---NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC---CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 57778888888887665 56667777765542 224446566777777899999999999999763 213344555
Q ss_pred HHHHH---HHcCChHHHHHHHHHHHHcCCCCCH
Q 003946 529 LLKAY---IEANRPREVTALLRDARSAGIQLDA 558 (784)
Q Consensus 529 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~ 558 (784)
++..+ .... ...|...++.+....+.|..
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence 55544 3333 35566666666554445444
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.48 E-value=2.2 Score=41.44 Aligned_cols=86 Identities=9% Similarity=-0.013 Sum_probs=37.3
Q ss_pred CChhHHHHHHHHhHhcCCCCCcH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCCHH
Q 003946 572 KDTPGALHLFKEMKESKIPRSGH---QEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGV-HDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 572 g~~~~A~~~~~~m~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~y~~li~~~~~~g~~~ 647 (784)
|++..|...|...++.. |.+. ..+--|..++...|++++|..+|..+.+.++-.|.. ..+--|.....+.|+.+
T Consensus 155 gdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 155 GDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred CCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34455555554444432 2111 123334444444444444444444444443322221 23344444445555555
Q ss_pred HHHHHHHHHHhC
Q 003946 648 DAEKALKRMRSL 659 (784)
Q Consensus 648 ~A~~~~~~m~~~ 659 (784)
+|..+|++..+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 247
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.34 E-value=22 Score=37.76 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
|....-+++..+.++....-+..+-.+|..-| .+...|-.++..|... ..+.-..+++.+.+..+. |++.-.-|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~----e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG----ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 44444455555555555555555555555444 2333445555555554 334445555555554432 33333333
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 003946 530 LKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~ 551 (784)
..-|-+ ++.+.+..+|.+...
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHH
Confidence 333333 455555555555443
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.11 E-value=9.1 Score=41.20 Aligned_cols=158 Identities=12% Similarity=0.155 Sum_probs=104.1
Q ss_pred HHHHHcCCHHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 496 TLCISLGWLDQAHDLLD--EMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD 573 (784)
Q Consensus 496 ~~~~~~g~~~~a~~~~~--~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 573 (784)
....-.++++.+.+..+ ++.. .+ ...-.+.++.-+-+.|..+.|+.+...-.. =.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCC
Confidence 34445677887666654 1221 12 245578899999999999999987554321 1234457799
Q ss_pred hhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003946 574 TPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKAL 653 (784)
Q Consensus 574 ~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 653 (784)
++.|.++.++ .++...|..|.......|+++.|++.|.+... |..|+-.|.-.|+.+.-.++.
T Consensus 334 L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 334 LDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHH
Confidence 9999887654 33567999999999999999999999998875 788999999999998888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 654 KRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 654 ~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
+.....|- ++.-+.++.-.| +.++..+++.+-
T Consensus 397 ~~a~~~~~------~n~af~~~~~lg-d~~~cv~lL~~~ 428 (443)
T PF04053_consen 397 KIAEERGD------INIAFQAALLLG-DVEECVDLLIET 428 (443)
T ss_dssp HHHHHTT-------HHHHHHHHHHHT--HHHHHHHHHHT
T ss_pred HHHHHccC------HHHHHHHHHHcC-CHHHHHHHHHHc
Confidence 77776641 455555566667 777766666543
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.09 E-value=21 Score=37.06 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 492 GHVITLCISLGWLDQAHDLLDEMHLAG---VRASSSVYASLLKAYIE---ANRPREVTALLRDARSAGIQLDASCYEALL 565 (784)
Q Consensus 492 ~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 565 (784)
..++-+|-...+++...++++.|.... +.-...+---..-++-+ .|+.++|.+++..+....-.++..+|..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345556778888888888888887652 11122222233445556 788888888888865555566777776665
Q ss_pred HHHH
Q 003946 566 QSKI 569 (784)
Q Consensus 566 ~~~~ 569 (784)
..|-
T Consensus 225 RIyK 228 (374)
T PF13281_consen 225 RIYK 228 (374)
T ss_pred HHHH
Confidence 5543
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.08 E-value=8.2 Score=33.72 Aligned_cols=80 Identities=13% Similarity=0.003 Sum_probs=54.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA 536 (784)
Q Consensus 457 li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 536 (784)
-.....+.|++++|.+.|+.+..+-+.-+-....-..++.+|.+.+++++|...++..++.....--.-|.-.+.+++.-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34445578899999999999887653123334456668888899999999999999888875332234555555555543
No 251
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.05 E-value=22 Score=37.15 Aligned_cols=149 Identities=9% Similarity=0.061 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 003946 594 HQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH-SMV 672 (784)
Q Consensus 594 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll 672 (784)
...|...+....+...++.|..+|-+..+..-..|++..++++|.-++ .|+..-|.++|+--... -||...|- -.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 457788888888888899999999999887767789999999999766 56778899999866553 46665554 455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 003946 673 TGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYH 751 (784)
Q Consensus 673 ~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 751 (784)
.-+...+ +-+.|..+|+...++..+. --..+|..+|+-=..-|++..|..+=++|.+ +.|-..+...+..++.
T Consensus 474 ~fLi~in-de~naraLFetsv~r~~~~---q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRIN-DEENARALFETSVERLEKT---QLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhC-cHHHHHHHHHHhHHHHHHh---hhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 5666778 8899999999766532221 1266899999999999999999999999988 4788888777775444
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.94 E-value=3.7 Score=39.90 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=77.1
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHH
Q 003946 253 TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADS----NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQF 328 (784)
Q Consensus 253 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 328 (784)
...|+..+..+ +.|++.+|...|...++.. |+. ..+=-|...+...|++++|..+|..+.+..+.+... .-.
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA-pda 217 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA-PDA 217 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC-hHH
Confidence 33688888765 6788999999999998864 332 344457899999999999999999998873222211 015
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003946 329 YNCLLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
.-.|..+..+.|+.++|...|++..++
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 788888999999999999999999885
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.93 E-value=16 Score=36.89 Aligned_cols=130 Identities=10% Similarity=-0.011 Sum_probs=64.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHH---
Q 003946 600 LVKGCAQNHEAGLMAKLLQEVKEGQR----IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL----GHLPNAQTF--- 668 (784)
Q Consensus 600 ll~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~--- 668 (784)
+..+....+.++.+.+.|+...+--. ..-...+|..|-..|.+..++++|.-+..+..+. ++.--..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33444444455566655554432110 1112345666777777777777666554443321 221111122
Q ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003946 669 --HSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANEVVAM 730 (784)
Q Consensus 669 --~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~ 730 (784)
..+..++...| ...+|.+.-++..+.....|-.+ -....-++.+.|...|+.+.|..=++.
T Consensus 208 ~lyhmaValR~~G-~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLG-RLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22334566666 66666666666555332223222 123345666777777776666555543
No 254
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=4.7 Score=41.45 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
.+++.+..+|.+.+++.+|++.-+...... |++....-.-..+|...|+++.|...|+.+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345666666677777777777766666544 55554444444555555555555555555554
No 255
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=7.6 Score=39.98 Aligned_cols=97 Identities=11% Similarity=0.000 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
..+++.|.-+|.+.+++..|+..-+..+..+ .+|+-..--=-.+|...|+++.|+..|+.+++.. |.|...-+-++.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence 3466777788888888888888888887765 4566666666677788888888888888888754 777655555554
Q ss_pred HHHhcCcHHHH-HHHHHHHHh
Q 003946 603 GCAQNHEAGLM-AKLLQEVKE 622 (784)
Q Consensus 603 ~~~~~~~~~~a-~~~~~~~~~ 622 (784)
.-.+....... .++|..|-.
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 44444433332 445555543
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=89.91 E-value=7.5 Score=34.86 Aligned_cols=89 Identities=9% Similarity=-0.023 Sum_probs=65.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR 538 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 538 (784)
.-+-+.|++++|..+|.-+..-+ +-+..-+..|-.+|-..+++++|...|......+. -|...+-....+|...|+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 34558899999999999888765 34444355555666678899999999987766543 244555566778888999
Q ss_pred hHHHHHHHHHHHH
Q 003946 539 PREVTALLRDARS 551 (784)
Q Consensus 539 ~~~A~~~~~~m~~ 551 (784)
.+.|...|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988876
No 257
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.87 E-value=28 Score=36.43 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAG-IQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
..+|.+.++.-.+..-++.|..+|-+..+.| +.+++..++++|.-++. |+..-|..+|+--...- |++...-.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 5677788888888888999999999999888 67889999999998886 78888999988644432 56666677778
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003946 602 KGCAQNHEAGLMAKLLQEVKEGQRIDCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679 (784)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 679 (784)
..+...++-+.|..+|+...++ +..+ ...|..||+--..-|++..|..+=++|.+ +.|...+...+..-|....
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhc
Confidence 8888899999999999855443 1122 45799999988999999999999898887 4677777666666665544
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.81 E-value=33 Score=38.95 Aligned_cols=179 Identities=14% Similarity=0.106 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCI----SLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
.....-++.+.+...++.|+.+-+. . ..|..+...+...|+ +.|++++|...|-+-... +.|.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s----- 401 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---Q----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS----- 401 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---c----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----
Confidence 3455677778888888888776544 2 234444445554444 689999998877665433 2232
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
.+|.-|.+..++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..|.+.
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~---~fd~e~al~Ilr~s 476 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW---FFDVETALEILRKS 476 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce---eeeHHHHHHHHHHh
Confidence 3455666677777888888889888864 66666889999999999888777665543 3321 12356667777777
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
+-.++|..+-..... .. ..+--.+-..|++++|++.+..+.
T Consensus 477 nyl~~a~~LA~k~~~------he---~vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 477 NYLDEAELLATKFKK------HE---WVLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred ChHHHHHHHHHHhcc------CH---HHHHHHHHHhcCHHHHHHHHhcCC
Confidence 777777766555543 12 222333456788999999988765
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.80 E-value=10 Score=33.16 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=40.1
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVTGYA 676 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~ 676 (784)
..+.|++++|.+.|+.+..+.+..| ....--.|+.+|.+.|++++|...+++.++. .|+ ..-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCccHHHHHHHHH
Confidence 3445566666666666666554333 1234455667777777777777777777664 332 233444444444
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.17 E-value=21 Score=33.99 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=65.1
Q ss_pred HHHHcCChhHHHHHHHHhHhcCCC-CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 003946 567 SKIVQKDTPGALHLFKEMKESKIP-RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRL 645 (784)
Q Consensus 567 ~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~ 645 (784)
.+...|+.+.|...+.+....... ......+......+...++.+.+...+.......... ....+..+-..+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHHHHHccc
Confidence 344445555555555544331100 0122233333333445555666666665555533210 24556666777777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 646 MQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 646 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
.+.|...+...... .|+ ...+..+...+...+ ..+.+...+.+...
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELG-RYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 77777777777764 333 344444444555555 67777777777665
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.80 E-value=1.5 Score=29.38 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 561 YEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
|..+...|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.75 E-value=24 Score=34.20 Aligned_cols=83 Identities=12% Similarity=0.023 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 486 HDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV--RASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563 (784)
Q Consensus 486 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 563 (784)
|-...|+.-+.. .+.|++++|.+.|+.+...-. +-...+.-.++.++-+.+++++|...+++-...-......-|..
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 334445544433 355677777777777664421 11234445555666666777777766666554322222234444
Q ss_pred HHHHHH
Q 003946 564 LLQSKI 569 (784)
Q Consensus 564 li~~~~ 569 (784)
.|.+++
T Consensus 112 YlkgLs 117 (254)
T COG4105 112 YLKGLS 117 (254)
T ss_pred HHHHHH
Confidence 444444
No 263
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.71 E-value=3.5 Score=40.55 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=69.9
Q ss_pred cCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCC--chhhHHHHHHHhhhcCChhH
Q 003946 194 TEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKP--NTNTFNIALAGCLLFETTRK 271 (784)
Q Consensus 194 ~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~ 271 (784)
.|....+.+...++..-... ..++++...+- +++.... ....| ..++|-.++.- -++++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~--------~~idd~~~~Ly--KlRhs~~-----a~~~~~~~~~~~irlllk----y~pq~ 118 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSR--------EEIDDAEYYLY--KLRHSPN-----AWYLRNWTIHTWIRLLLK----YDPQK 118 (418)
T ss_pred cCCCcceeehhhhhhccccc--------cchhHHHHHHH--HHhcCcc-----hhhhccccHHHHHHHHHc----cChHH
Confidence 44444555555555433322 56666666655 4433111 11123 23444444433 37789
Q ss_pred HHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003946 272 AEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEA 317 (784)
Q Consensus 272 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 317 (784)
++.++..=+..|+-||.++++.+++.+.+.+++.+|.++.-.|...
T Consensus 119 ~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 119 AIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988777665
No 264
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.67 E-value=18 Score=32.73 Aligned_cols=58 Identities=7% Similarity=0.127 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
.+..++..+...|++-+|+++.+..... +......++.+-.+.+ +...-..+++-..+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~-D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSN-DDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 3677778888888888888888765332 1122244566666666 65554455544444
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.61 E-value=21 Score=33.42 Aligned_cols=72 Identities=7% Similarity=0.117 Sum_probs=50.3
Q ss_pred cccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHh
Q 003946 82 TILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEE 157 (784)
Q Consensus 82 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 157 (784)
.+...|.-|.+||-+---+...|+++.|.+.|+...+.++.-+-...|.-|.-|. .++..-|.+-+.+....
T Consensus 91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY----~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRYKLAQDDLLAFYQD 162 (297)
T ss_pred hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee----cCchHhhHHHHHHHHhc
Confidence 3456778899999988888899999999999999998764333333354454443 24445566667766665
No 266
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.27 E-value=49 Score=37.15 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
-.+.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-.++-+.+.. +.-|.-...
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe 752 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVE 752 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHH
Confidence 3344455556667777777777777665 57777777777888877777776665544321 234666677
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALK 654 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 654 (784)
+|.+.|+.++|.+++..... +.-.+.+|.+.|++.+|.++--
T Consensus 753 ~c~~~~n~~EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG----------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCC----------hHHHHHHHHHhccHHHHHHHHH
Confidence 77777777777776655542 1145667777777777666543
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.87 E-value=6.1 Score=39.11 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL-----AGVRASSSVYA 527 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~ 527 (784)
++..++..+...|+++.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d---p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD---PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 45556666666666666666666666655 55666666666666666666666666665553 35555554444
Q ss_pred HHH
Q 003946 528 SLL 530 (784)
Q Consensus 528 ~li 530 (784)
...
T Consensus 232 ~y~ 234 (280)
T COG3629 232 LYE 234 (280)
T ss_pred HHH
Confidence 333
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.85 E-value=11 Score=34.89 Aligned_cols=99 Identities=14% Similarity=0.229 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCH---
Q 003946 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDE--- 705 (784)
Q Consensus 631 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~--- 705 (784)
..+..+..-|++.|+.++|.+.+.++.+....|. ...+-.+|..+...+ ++..+.....+....... +-.++.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~~~-~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLIEK-GGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhc-cchHHHHHH
Confidence 4688999999999999999999999998755554 446677888888889 999999999988775433 121221
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 706 -ELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 706 -~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..|..| .+...|++.+|.+.|-+...
T Consensus 115 lk~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHH--HHHHhchHHHHHHHHHccCc
Confidence 223333 23356799999999877753
No 269
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.32 E-value=8.9 Score=32.58 Aligned_cols=92 Identities=9% Similarity=-0.043 Sum_probs=53.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC--HHHHHHHHHHHH
Q 003946 639 FFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD--EELLDSVLYTFV 716 (784)
Q Consensus 639 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~--~~~~~~li~~~~ 716 (784)
+++..|+++.|++.|.+.+.. .+-....||.=..++.-.| +.++|..=+++..+.. |-... ...|..=...|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~-~~e~ALdDLn~AleLa---g~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQG-DDEEALDDLNKALELA---GDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcC-ChHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHH
Confidence 455667777777777666653 2225666666666676666 7777766666665532 22111 122333345566
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 003946 717 RGGFFARANEVVAMMEEGK 735 (784)
Q Consensus 717 ~~g~~~~A~~l~~~m~~~g 735 (784)
..|+-+.|..=|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 6677677766666665554
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.10 E-value=1.2 Score=29.91 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchh
Q 003946 90 PAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTL 127 (784)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~ 127 (784)
|..|..+.+.|...|++++|.++|++..+.. |+...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~ 36 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD--PDDPE 36 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHH
Confidence 4578889999999999999999999999865 65543
No 271
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.00 E-value=17 Score=40.81 Aligned_cols=183 Identities=13% Similarity=0.002 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHH--HH-HHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHc
Q 003946 467 TKELTHFLIKAEKENLQVSHDDAALGHVI--TL-CISLGWLDQAHDLLDEMHL-------AGVRASSSVYASLLKAYIEA 536 (784)
Q Consensus 467 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li--~~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 536 (784)
...|...++.....|. .........+ .+ +....+++.|..+|+...+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4577888888877772 2222222222 33 4466789999999998877 55 334566677777764
Q ss_pred C-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH--hcC
Q 003946 537 N-----RPREVTALLRDARSAGIQLDASCYEALLQSKIV-QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA--QNH 608 (784)
Q Consensus 537 g-----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~--~~~ 608 (784)
. +.+.|..++...-+.| .|+....-..+.-... ..+...|.++|....+.|..+ ...+..+.-..+ -..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~--A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL--AIYRLALCYELGLGVER 378 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH--HHHHHHHHHHhCCCcCC
Confidence 3 5677999999988887 4677666555554444 356789999999999888532 212222211111 223
Q ss_pred cHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003946 609 EAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661 (784)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 661 (784)
+.+.|..++....+.+. |-..---..+..+.. ++.+.+.-.+..+.+.|.
T Consensus 379 ~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CHHHHHHHHHHHHHccC--hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 78888888888887762 221111222333344 777777777777776654
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.09 E-value=2.1 Score=27.17 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
|+.|...|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666777777777777776643
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.79 E-value=2.1 Score=27.17 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 707 LLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 707 ~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
+|..|...|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999998854
No 274
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.94 E-value=82 Score=35.67 Aligned_cols=95 Identities=9% Similarity=-0.032 Sum_probs=60.6
Q ss_pred HHHHHhhhhhccCCcCccccccccccCCCC---chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHH
Q 003946 222 ELILEIGYLFQDGRVDPRKKCNAPLIAMKP---NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIY 298 (784)
Q Consensus 222 ~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 298 (784)
+.+++|+...+ .. .|..| -.-.+...|..+.-.|++++|-.+.-.|.. -+..-|.-.+.-+
T Consensus 370 k~yeeAl~~~k--~~----------~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f 433 (846)
T KOG2066|consen 370 KKYEEALDAAK--AS----------IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKF 433 (846)
T ss_pred hHHHHHHHHHH--hc----------cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHh
Confidence 78888888776 44 33344 233577788888888999999888888764 2556666666666
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHh
Q 003946 299 ERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLK 338 (784)
Q Consensus 299 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (784)
...++..+. +..++.....-.+. +|..++..|..
T Consensus 434 ~e~~~l~~I---a~~lPt~~~rL~p~---vYemvLve~L~ 467 (846)
T KOG2066|consen 434 AELDQLTDI---APYLPTGPPRLKPL---VYEMVLVEFLA 467 (846)
T ss_pred ccccccchh---hccCCCCCcccCch---HHHHHHHHHHH
Confidence 766666543 33333322211222 68888877776
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.80 E-value=32 Score=30.82 Aligned_cols=52 Identities=10% Similarity=0.035 Sum_probs=30.3
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 606 QNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
+.++.++++.+++.+.--.+-.|...++..++ +...|++.+|+.+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 34455666666666655443334444455444 46677777777777776654
No 276
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.71 E-value=9.3 Score=30.91 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=44.2
Q ss_pred HHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 271 KAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 271 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
+..+-++.+....+.|++.+..+.+.+|-|.+++..|.++|+.++.+...... .|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~----~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE----IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT----HHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH----HHHHHHH
Confidence 66667777788889999999999999999999999999999999887544432 3655543
No 277
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=83.69 E-value=27 Score=29.85 Aligned_cols=55 Identities=25% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
+++..|+++.|++.|.+....- ......||.=..++.-.|+.++|++=+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 5667777777777777765542 235667777777777777777777777666654
No 278
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=83.21 E-value=42 Score=31.75 Aligned_cols=223 Identities=17% Similarity=0.078 Sum_probs=152.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHH
Q 003946 502 GWLDQAHDLLDEMHLAGVR-ASSSVYASLLKAYIEANRPREVTALLRDARSA-GIQLDASCYEALLQSKIVQKDTPGALH 579 (784)
Q Consensus 502 g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~ 579 (784)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555555555555554322 13567777777888888888888888777642 223455666667777777778888888
Q ss_pred HHHHhHhcCCCCCcHHHHHHHHH-HHHhcCcHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 580 LFKEMKESKIPRSGHQEFEMLVK-GCAQNHEAGLMAKLLQEVKEGQRI-DCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 580 ~~~~m~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
.+.........+ ......... .+...|+++.+...++......+. ......+......+...++.+++...+.+..
T Consensus 117 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDP--DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 888877654322 222333333 788999999999999988552210 1233445555555778899999999999998
Q ss_pred hCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 658 SLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 658 ~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
... .. ....+..+-..+...+ +++.+...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLG-KYEEALEYYEKALEL------DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcc-cHHHHHHHHHHHHhh------CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 752 22 3677788888888888 999999999988762 232 445555666666777899999998888864
No 279
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.66 E-value=43 Score=31.49 Aligned_cols=163 Identities=12% Similarity=0.011 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 003946 560 CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHF 639 (784)
Q Consensus 560 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~ 639 (784)
.||-+---+...|+++.|.+.|+...+.. |....+.-.-.-++.-.|++..|.+-|...-+.++..|-...|--++.
T Consensus 101 vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 101 VFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 34444444455666666666666655543 333222222222334456666666666555555544443333433332
Q ss_pred HHhcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCC--CCCCHHHHHHHHHHHH
Q 003946 640 FCKKRLMQDAEK-ALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTS--MNFDEELLDSVLYTFV 716 (784)
Q Consensus 640 ~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~--~~p~~~~~~~li~~~~ 716 (784)
..-++.+|.. +.++... .|..-|...|..|.- | ++. ...+++.++....+.. -+.-.+||--|..-|.
T Consensus 178 --~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-g-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-G-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred --hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-h-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 2234555543 3444443 355555555554443 2 221 2344555544211100 0012457777888888
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003946 717 RGGFFARANEVVAMMEEG 734 (784)
Q Consensus 717 ~~g~~~~A~~l~~~m~~~ 734 (784)
..|+.++|..+|+-....
T Consensus 249 ~~G~~~~A~~LfKLaian 266 (297)
T COG4785 249 SLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 899999999999887754
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.65 E-value=14 Score=34.02 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCH----H
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR---ASS----S 524 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~~----~ 524 (784)
..+..+..-|++.|+.+.|.+.|.++.........-...+-.+|..+...+++..+.....+....--. ++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 477888899999999999999999988765212222335677888888889998888887776643211 111 1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
+|..|. +...+++..|-+.|-+..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 222221 223566777776666553
No 281
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.47 E-value=50 Score=32.10 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|+.- ..-.+.|++++|.+.|+.+..+.+.-+-...+...++-++-+.++++.|....++..+.-....-.-|..-|
T Consensus 35 ~~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3445544 455688999999999999998764233445566667788889999999999999988654322233455555
Q ss_pred HHHH
Q 003946 531 KAYI 534 (784)
Q Consensus 531 ~~~~ 534 (784)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5555
No 282
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.13 E-value=23 Score=31.20 Aligned_cols=113 Identities=9% Similarity=-0.009 Sum_probs=76.6
Q ss_pred CChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchh--HHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCcc
Q 003946 88 RDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTL--VNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEK 165 (784)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 165 (784)
.+...|...| .+....|.+.+..++..+ .|.+|...+..++......+++.+..+....-.+..+.
T Consensus 12 ~nL~~w~~fi------------~~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ 79 (145)
T PF13762_consen 12 ANLEVWKTFI------------NSHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDN 79 (145)
T ss_pred hhHHHHHHHH------------HHHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhccc
Confidence 3556666665 333344454444455433 38888888877777776666666644433222234677
Q ss_pred chHHHHHHHHhhCCC-CccHHHHHHHHhhcCCCCChHHHHHHHHHHhh
Q 003946 166 EPLIYLSLGLSKCGL-PVPASTILRKLVATEQYPPVTAWSAILAHMSL 212 (784)
Q Consensus 166 ~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 212 (784)
+.|..++...++..- ---+..+|.-|.+.+.++++.-|..+|.++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 888899988876665 45667889999988889999999999988766
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.10 E-value=1e+02 Score=35.34 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=30.0
Q ss_pred HHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 259 ALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRH 313 (784)
Q Consensus 259 ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~ 313 (784)
+|.-|.......+-..+++.+.+.|+. +..--+.|+.+|.+.++.+...+..+.
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 445555555555555666666666643 333444566666666666655544443
No 284
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.79 E-value=11 Score=30.14 Aligned_cols=53 Identities=6% Similarity=0.013 Sum_probs=44.3
Q ss_pred ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 003946 268 TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNL 320 (784)
Q Consensus 268 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 320 (784)
|.-++.+-++.+....+.|++.+..+.+.+|-|.+++..|.++|+.++.+...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~ 74 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA 74 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC
Confidence 33466667777778888999999999999999999999999999998866443
No 285
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.15 E-value=54 Score=31.56 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 291 LIIMAHIYERNGRREELRKLQRHID 315 (784)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~l~~~~~ 315 (784)
|.....+|-...+++.|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3333444455555555555444443
No 286
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.07 E-value=65 Score=32.48 Aligned_cols=118 Identities=8% Similarity=-0.141 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHH--HHHHHHHHcCChhH
Q 003946 501 LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDA--SCYE--ALLQSKIVQKDTPG 576 (784)
Q Consensus 501 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~--~li~~~~~~g~~~~ 576 (784)
.|+..+|-..++++.+. .+.|...++--=.+|.-.|+.+.-...++++.-. ..||. .+|- .+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 46666666666666654 3456666666667777777777777777766432 01222 2222 22223345666677
Q ss_pred HHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 577 ALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 577 A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
|.+.-++..+.+ +.+.-+-.++.....-.|+..++.++..+-..
T Consensus 194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted 237 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTED 237 (491)
T ss_pred HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhccc
Confidence 766666655544 45555555555555566666666665554443
No 287
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.01 E-value=43 Score=30.38 Aligned_cols=136 Identities=13% Similarity=0.054 Sum_probs=90.0
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhh
Q 003946 186 TILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLL 265 (784)
Q Consensus 186 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 265 (784)
+.+..+.+.|+.|+...|..+|..+.+. |.+.....++. -++-||.......+-.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~--------~~~~~L~qllq--------------~~Vi~DSk~lA~~LLs~~- 71 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRN--------GQFSQLHQLLQ--------------YHVIPDSKPLACQLLSLG- 71 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHh--------------hcccCCcHHHHHHHHHhH-
Confidence 4555666778888888899999888886 55555555555 445566555554443332
Q ss_pred cCChhHHHHHHHhhhhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhH
Q 003946 266 FETTRKAEQLLDIMPRI-GVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNS 344 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 344 (784)
+.+..+.++--+|.++ + ..+..+++.+...|++-+|.+........+... ...++.+-.+.+|...
T Consensus 72 -~~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~-------~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 72 -NQYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVP-------ARKFLEAAANSNDDQL 138 (167)
T ss_pred -ccChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC-------HHHHHHHHHHcCCHHH
Confidence 3445566666666543 2 234566777888899999988877754332222 5667888888888888
Q ss_pred HHHHHHHHHHHHH
Q 003946 345 ASKMVLEMLQRAK 357 (784)
Q Consensus 345 A~~~~~~m~~~~~ 357 (784)
-..+|+-+.+++.
T Consensus 139 f~~V~~ff~~~n~ 151 (167)
T PF07035_consen 139 FYAVFRFFEERNL 151 (167)
T ss_pred HHHHHHHHHHhhH
Confidence 8888887777664
No 288
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=80.99 E-value=45 Score=30.63 Aligned_cols=182 Identities=12% Similarity=0.159 Sum_probs=99.7
Q ss_pred cCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 517 AGVRASSSVYASLLKAYIEA----NRPREVTALLRDARSAGIQLDASC----YEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 517 ~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t----~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
.|..++...++-++..+.+. ++++-+..+-.+....++.++... ...=+..|-+.|||.+--.+|-...
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~--- 78 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK--- 78 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH---
Confidence 35566777777776666544 334444444444555555544332 2222334555555555433333222
Q ss_pred CCCCcHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003946 589 IPRSGHQEFEMLVKGCAQNHEAGL-----MAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP 663 (784)
Q Consensus 589 ~~~~~~~~~~~ll~~~~~~~~~~~-----a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 663 (784)
.+|.+.++++. |+.+.++-++ +|. +.|.....+-++.-+.+++-+.+-
T Consensus 79 -------------~gce~~~dlq~~~~~va~~Ltkd~Kd----k~~-vPFceFAetV~k~~q~~e~dK~~L--------- 131 (233)
T PF14669_consen 79 -------------MGCEKFADLQRFCACVAEALTKDSKD----KPG-VPFCEFAETVCKDPQNDEVDKTLL--------- 131 (233)
T ss_pred -------------hhcCCHHHHHHHHHHHHHHHHhcccc----cCC-CCHHHHHHHHhcCCccchhhhhhh---------
Confidence 22222222222 2222222222 222 246666666666555555433321
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC----------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003946 664 NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS----------TSMNFDEELLDSVLYTFVRGGFFARANEVVAM 730 (784)
Q Consensus 664 ~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~----------~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 730 (784)
..+=-+++..|.+.. +|.++.++++.|.+.... .+..+.-...|.....+.+.|.+|.|..++++
T Consensus 132 -GRiGiS~m~~Yhk~~-qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 132 -GRIGISLMYSYHKTL-QWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred -hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 122245677788888 899999999988764211 22344556778889999999999999999883
No 289
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.63 E-value=23 Score=35.06 Aligned_cols=125 Identities=13% Similarity=0.095 Sum_probs=92.1
Q ss_pred hccchhhHHHHHHHhcc-cCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCC
Q 003946 102 NEHRYGDAWKLYEQHMQ-MDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGL 180 (784)
Q Consensus 102 ~~~~~~~A~~l~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 180 (784)
++....+|+.+|+.... ..+.-|......+|+......+ .....-++++..+... .+..+++.+....+..+++.++
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~-~~l~alYEvV~~l~~t-~~~~l~~~vi~~Il~~L~~~~d 217 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDEN-TKLNALYEVVDFLVST-FSKSLTRNVIISILEILAESRD 217 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccc-cchhhHHHHHHHHHhc-cccCCChhHHHHHHHHHHhccc
Confidence 34556788888884333 2345667777788888876222 2555566666666655 5566888889999999999999
Q ss_pred CccHHHHHHHHhhc-CCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCc
Q 003946 181 PVPASTILRKLVAT-EQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRV 236 (784)
Q Consensus 181 ~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m 236 (784)
+..-.++++.-... +..-|...|...|...... |+..-...+.++|.+
T Consensus 218 W~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~s--------gD~~~~~kiI~~GhL 266 (292)
T PF13929_consen 218 WNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVES--------GDQEVMRKIIDDGHL 266 (292)
T ss_pred HHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHc--------CCHHHHHHHhhCCCe
Confidence 99999999987765 7788999999999998887 556666666666555
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.09 E-value=11 Score=37.27 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=77.5
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003946 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENL-QVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSV 525 (784)
Q Consensus 447 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 525 (784)
......+...++..-....+++.+...+-+++.... ...|+...+ +++.-|.+ =+.++++.++..=.+.|+-||.++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 444566677777777778899999999888875421 012332222 34444443 367899999998899999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAG 553 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g 553 (784)
++.+|+.+.+.+++.+|..+.-.|..+.
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999888876543
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=78.93 E-value=5.3 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 706 ELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 706 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..|..+...|...|++++|.+.+++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4567777777888888888888877776
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=78.42 E-value=5.4 Score=24.65 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
+|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666555
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.58 E-value=19 Score=28.89 Aligned_cols=48 Identities=6% Similarity=0.220 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 646 MQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 646 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
.-++.+-++.+....+.|++....+.+.||.+.+ ++-.|.++++-++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvN-D~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVN-DFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Confidence 3345555555555567777777777777777777 77777777776664
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.60 E-value=6.7 Score=24.08 Aligned_cols=28 Identities=18% Similarity=0.054 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 706 ELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 706 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..|..+...|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677778888888888888887765
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=76.56 E-value=3.3 Score=25.93 Aligned_cols=20 Identities=15% Similarity=0.394 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 003946 630 VHDWNNVIHFFCKKRLMQDA 649 (784)
Q Consensus 630 ~~~y~~li~~~~~~g~~~~A 649 (784)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444455555555555444
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.21 E-value=1e+02 Score=32.04 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=60.5
Q ss_pred cCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC---hh
Q 003946 247 IAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLS---DI 323 (784)
Q Consensus 247 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~---~~ 323 (784)
....+|..+|..++..-. .++..+ ........++..+...+.+.|.++.|...+..+....... .+
T Consensus 116 ~~~~~~~~~~~~il~~R~---------~~l~~~--~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~ 184 (352)
T PF02259_consen 116 PNMQDDFSVWEPILSLRR---------LVLSLI--LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLP 184 (352)
T ss_pred HHhccchHHHHHHHHHHH---------HHHhcc--cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCc
Confidence 344666767776664321 111111 1122344678888899999999999999988887743111 11
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003946 324 QFRQFYNCLLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
. +.-.-....-..|+.++|+..+++....
T Consensus 185 ~---v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 185 R---VFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred c---hHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 3445556667788999999999888874
No 297
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=75.82 E-value=93 Score=31.35 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKRMRS----LGHLPNAQTFH 669 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~ 669 (784)
+-....-||+.|+-+.|++.+.+..+ .|.+.|..-+.
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~ 147 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYK 147 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHH
Confidence 44445556666666666665554433 35555555443
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.90 E-value=7.6 Score=25.21 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
+++.|...|...|++++|+.++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666666666666666666665543
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.68 E-value=7.5 Score=25.24 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 706 ELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 706 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
.+++.|...|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5678888888888999999888888763
No 300
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.01 E-value=1.7e+02 Score=33.43 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=44.4
Q ss_pred CChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChh----hHHHHHHHHHHHHHhcccccC
Q 003946 88 RDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSK----WLEKAYGLVEQAFEEGKQILL 163 (784)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~ 163 (784)
.+..+|. +|--|.|.|.+++|.++...... ........+...+..++...+.. .-.+....+.+.... ..
T Consensus 110 ~~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~----~~ 183 (613)
T PF04097_consen 110 NGDPIWA-LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN----ST 183 (613)
T ss_dssp TTEEHHH-HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-----T
T ss_pred CCCccHH-HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC----CC
Confidence 3445665 56677899999999999955544 33455567788888887643221 223444455544332 22
Q ss_pred ccchHHHH
Q 003946 164 EKEPLIYL 171 (784)
Q Consensus 164 ~~~~~~~l 171 (784)
+.|.|-..
T Consensus 184 ~~DpyK~A 191 (613)
T PF04097_consen 184 DGDPYKRA 191 (613)
T ss_dssp TS-HHHHH
T ss_pred CCChHHHH
Confidence 22666553
No 301
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.00 E-value=70 Score=29.05 Aligned_cols=139 Identities=17% Similarity=0.095 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH-
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSS-VYASL- 529 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~l- 529 (784)
..|..-+. +++.+..++|+.-|..+.+.|..--|-.. ..-+-....+.|+...|...|+++-...-.|-+. -..-|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA-~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLA-RMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHH-HHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 34444443 46777888999999999888731122111 1122234457788899999999887654334322 11111
Q ss_pred -HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCC
Q 003946 530 -LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRS 592 (784)
Q Consensus 530 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 592 (784)
.-.+...|.+++.....+.+...|-..-...-..|--+-.+.|++..|.+.|..+......|.
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 223556788888887777775443222233344555555678888888888888776444343
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.45 E-value=69 Score=28.76 Aligned_cols=89 Identities=18% Similarity=0.115 Sum_probs=51.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA-N 537 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g 537 (784)
+.-.+.++.+++..++..+..-.+ -.|...++... -+...|++.+|..+|+++.+.. |.......|+..|... |
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP-~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRP-EFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCC-CchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcC
Confidence 334577788999999988876531 23333334333 3567899999999999987764 3333344444444333 3
Q ss_pred ChHHHHHHHHHHHHcC
Q 003946 538 RPREVTALLRDARSAG 553 (784)
Q Consensus 538 ~~~~A~~~~~~m~~~g 553 (784)
+.+ =...-+++.+.+
T Consensus 93 D~~-Wr~~A~evle~~ 107 (160)
T PF09613_consen 93 DPS-WRRYADEVLESG 107 (160)
T ss_pred ChH-HHHHHHHHHhcC
Confidence 322 222334455554
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.57 E-value=68 Score=28.33 Aligned_cols=60 Identities=20% Similarity=0.141 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhh
Q 003946 147 AYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSL 212 (784)
Q Consensus 147 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 212 (784)
+..++..+... .|..+..+++... .+...|++++|.++|+++.+.+ ....|..-+.++|-
T Consensus 29 ~e~lLdALrvL-rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~---~~~p~~kAL~A~CL 88 (153)
T TIGR02561 29 AQAMLDALRVL-RPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA---GAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHh-CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC---CCchHHHHHHHHHH
Confidence 44444444443 4443444444433 3557888888888888887753 23355555555554
No 304
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=71.86 E-value=3 Score=26.13 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=24.8
Q ss_pred ccccCCChHHHHHHHHHHHhccchhhHH
Q 003946 83 ILVQARDPAKLSAEIENAINEHRYGDAW 110 (784)
Q Consensus 83 ~~~~~~~~~~~~~li~~~~~~~~~~~A~ 110 (784)
+...|.|+.+|+.+...|...|++++|+
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4567889999999999999999999986
No 305
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=71.62 E-value=97 Score=29.67 Aligned_cols=110 Identities=9% Similarity=0.011 Sum_probs=62.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc--------cCCCCCCCHHHHHHH
Q 003946 640 FCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFA--------SSTSMNFDEELLDSV 711 (784)
Q Consensus 640 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~--------~~~~~~p~~~~~~~l 711 (784)
|.+..+..--.++.+-....++.-+.....+++ +...| +...|..-++.-..-. -+-.-.|.+.....+
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G-DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~m 245 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG-DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKM 245 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc-hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHH
Confidence 444444333333333333334443444333333 23345 6666655554433210 001234778888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcccc
Q 003946 712 LYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTLY 755 (784)
Q Consensus 712 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~~~ 755 (784)
+..|.+ +++++|.+++.++-+.|+.|....-+.+ +..++.+
T Consensus 246 l~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F--Rv~K~~~ 286 (333)
T KOG0991|consen 246 LQACLK-RNIDEALKILAELWKLGYSPEDIITTLF--RVVKNMD 286 (333)
T ss_pred HHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHhcc
Confidence 887765 5899999999999999999987766555 4445544
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.38 E-value=2.7 Score=37.25 Aligned_cols=89 Identities=12% Similarity=0.053 Sum_probs=58.9
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccccc
Q 003946 168 LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLI 247 (784)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~ 247 (784)
...+|..|.+.+.++....+++.+...+..-+....+.++..|++. +..++..++++ ..
T Consensus 10 ~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~--------~~~~~l~~~L~--~~----------- 68 (143)
T PF00637_consen 10 ISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKY--------DPYEKLLEFLK--TS----------- 68 (143)
T ss_dssp SCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCT--------TTCCHHHHTTT--SS-----------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhc--------CCchHHHHHcc--cc-----------
Confidence 3446777778888888888888888776666788888888888886 33344444444 21
Q ss_pred CCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhh
Q 003946 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPR 281 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 281 (784)
+.+-...++..|.+.|.+++|.-++..+-.
T Consensus 69 ----~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 69 ----NNYDLDKALRLCEKHGLYEEAVYLYSKLGN 98 (143)
T ss_dssp ----SSS-CTHHHHHHHTTTSHHHHHHHHHCCTT
T ss_pred ----cccCHHHHHHHHHhcchHHHHHHHHHHccc
Confidence 113335667777777777777777776543
No 307
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.33 E-value=1.9e+02 Score=32.96 Aligned_cols=50 Identities=10% Similarity=0.031 Sum_probs=35.0
Q ss_pred chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcC
Q 003946 252 NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNG 302 (784)
Q Consensus 252 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 302 (784)
|...-..+|-.|.|+|++++|.++..+.... +......+...+..|....
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 4444556788899999999999999655443 4555567778888887753
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.17 E-value=94 Score=34.10 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=51.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHH
Q 003946 534 IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLM 613 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 613 (784)
.+.|+++.|.++..+.. +..-|..|-.+....+++..|.+.|..... |..|+-.+...|+-+..
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHH
Confidence 34555565555544332 445566666666666666666666554332 33444444444444433
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 614 AKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRM 656 (784)
Q Consensus 614 ~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 656 (784)
..+-...++.+. .|.-..+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g~-------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGK-------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcc-------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 333333333332 233334566677777777766544
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=70.40 E-value=27 Score=28.41 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 507 AHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 507 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
.++-++.+....+.|++.+..+.+.+|-+.+++..|.++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.15 E-value=46 Score=30.87 Aligned_cols=88 Identities=9% Similarity=0.028 Sum_probs=47.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 533 YIEANRPREVTALLRDARSAGIQLDA------SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
+.+.|++++|..-|.+.++. .|.. +.|..-..++.+.+.++.|+.-....++.+ |....+...-..+|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 44556666666666665543 2222 233444445556666666666666666554 4333333333345556
Q ss_pred cCcHHHHHHHHHHHHhcC
Q 003946 607 NHEAGLMAKLLQEVKEGQ 624 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~ 624 (784)
...+++|..-|..+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 666666666666666543
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.09 E-value=86 Score=28.48 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDARSAGIQLDAS-CYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
..|..-++ ++..+..++|+.-|..+.+.|..--.+ .---+.....+.|+...|...|+++-...
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 34443333 355666777777777777665431111 11112223445667777777777665543
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.07 E-value=34 Score=31.98 Aligned_cols=78 Identities=12% Similarity=-0.001 Sum_probs=52.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCC
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA---GVRASSSVYASLLKAYIEANR 538 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~ 538 (784)
.+.|+ ++|.+.|-.+...+ ..-++.....|..-|. ..+.+++..++....+. +-.+|+..+.+|++.|-+.|+
T Consensus 118 sr~~d-~~A~~~fL~~E~~~--~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTP--ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hccCc-HHHHHHHHHHcCCC--CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 34444 56788888887776 3445554444444444 56788888888777643 335678888888888888888
Q ss_pred hHHHH
Q 003946 539 PREVT 543 (784)
Q Consensus 539 ~~~A~ 543 (784)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 87764
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.23 E-value=35 Score=31.82 Aligned_cols=82 Identities=17% Similarity=0.067 Sum_probs=59.1
Q ss_pred hhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCCh
Q 003946 263 CLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDL 342 (784)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 342 (784)
..+.|+ +.|.+.|-.+...+.--++...-.|...|. ..+.+++..++-...+...+....+..++.+|++.|-+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 578888888888876666677777766666 678889999888877653332111122799999999999999
Q ss_pred hHHH
Q 003946 343 NSAS 346 (784)
Q Consensus 343 ~~A~ 346 (784)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9885
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=68.86 E-value=13 Score=22.76 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
|..+...|...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444555555555555555555544
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=68.83 E-value=2.7e+02 Score=33.63 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHH
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQT--FHSMVTG 674 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~a 674 (784)
|.+...-|...+.+++|.-.|+..-+ ..--+.+|..+|++.+|+.+-.+|.. .-|... -..|..-
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHH
Confidence 33333344444455555544444332 12234556666666666666665542 112222 1345556
Q ss_pred HHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 675 YAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 675 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
+...+ +.-+|-++..+... | +.-.+..|+++..|++|..+...-.
T Consensus 1009 L~e~~-kh~eAa~il~e~~s---------d---~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1009 LVEQR-KHYEAAKILLEYLS---------D---PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHcc-cchhHHHHHHHHhc---------C---HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 66666 66666666655544 1 1234455666667777776665544
No 316
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.26 E-value=93 Score=29.93 Aligned_cols=120 Identities=12% Similarity=0.084 Sum_probs=78.8
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCCHHH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGV-HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA-AIGGKYTE 684 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~-~~g~~~~~ 684 (784)
..++..|...+.+... +.|+. .-|+.-+-.+.+..+++.+..=-.+.++ +.||.+.=..++..+. ... .+++
T Consensus 23 ~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~-~~~e 96 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSK-GYDE 96 (284)
T ss_pred hhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhc-cccH
Confidence 3345555555555444 34555 4466777778888888888776666665 5788776665555444 444 8899
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 685 VTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 685 a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
|+..+.+..+..+...+.|-..+...|..+=-+.=...+..++.++..
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 999998887766667777777788887766554444455556555543
No 317
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.90 E-value=37 Score=31.95 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG--VRASSSVYASLL 530 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li 530 (784)
|.+.-++.+.+.+.+.+++...++-.+.. +.|..+-..++..+|-.|++++|..-++..-+.. ..+-..+|..+|
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak---Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK---PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC---CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 44566778888899999999988888776 6677777788899999999999988877766542 233456666666
Q ss_pred HH
Q 003946 531 KA 532 (784)
Q Consensus 531 ~~ 532 (784)
.+
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 54
No 318
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=67.32 E-value=1.8e+02 Score=31.00 Aligned_cols=252 Identities=12% Similarity=0.067 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhc---ccccCccchH
Q 003946 92 KLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEG---KQILLEKEPL 168 (784)
Q Consensus 92 ~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 168 (784)
.-+.+|++|.. .+.+..........+.. | ...|-.+..++... ..+...+|++.+.....+. .+...+.+.+
T Consensus 48 l~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y-~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~ 122 (549)
T PF07079_consen 48 LGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY-KQKEYRKALQALSVWKEQIKGTESPWLDTNIQ 122 (549)
T ss_pred HhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 34567777765 45565555555555533 3 33444555554432 1344555666555544331 1111222221
Q ss_pred ---------HHHHHHHhhCCCCccHHHHHHHHhhcCC----CCChHHHHHHHHHHhhcC-------CCchhhHHHHHHhh
Q 003946 169 ---------IYLSLGLSKCGLPVPASTILRKLVATEQ----YPPVTAWSAILAHMSLTA-------PGAYLAAELILEIG 228 (784)
Q Consensus 169 ---------~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~~-------~~~~~~~~~~~~a~ 228 (784)
+..+..+...|++.+++.++++|..+=+ .-++.+||.+.-.+.++- ...-..-.-++.++
T Consensus 123 ~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemil 202 (549)
T PF07079_consen 123 QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMIL 202 (549)
T ss_pred HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHH
Confidence 2256678899999999999999876533 378888988655554420 00000001111122
Q ss_pred hhhccCCcCccccccccccCCCCchhhHHHHHHHhhhc--CChhHHHHHHHhhhhCCCCCChhH-HHHHHHHHHhcCCHH
Q 003946 229 YLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLF--ETTRKAEQLLDIMPRIGVKADSNL-LIIMAHIYERNGRRE 305 (784)
Q Consensus 229 ~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--g~~~~A~~l~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~ 305 (784)
...+ +|..-.. .+...+-|-.....+++....-. .+..--.++++.-...-+.|+... ...|+.-+.+ +.+
T Consensus 203 fY~k--ki~~~d~--~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e 276 (549)
T PF07079_consen 203 FYLK--KIHAFDQ--RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPE 276 (549)
T ss_pred HHHH--HHHHHhh--chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChH
Confidence 2222 2211000 00012344444444444443322 122223344444445556666533 3344444444 445
Q ss_pred HHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 306 ELRKLQRHIDEAV-NLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 306 ~A~~l~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
++..+.+.+.... .+-.....-++..+++..++.++..+|.+.+.-++.
T Consensus 277 ~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 277 QVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 5544444433220 000000001467777777788888877777765554
No 319
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.35 E-value=71 Score=26.59 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 89999999999999999999999887
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=64.78 E-value=45 Score=30.49 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC---CCHHHHHHHHHHHHhcccC-CCCCCCHHHHHHHHHHHHhcCChHH
Q 003946 649 AEKALKRMRSLGHLPN-AQTFHSMVTGYAAIG---GKYTEVTELWGEMKSFASS-TSMNFDEELLDSVLYTFVRGGFFAR 723 (784)
Q Consensus 649 A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g---~~~~~a~~~~~~m~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~ 723 (784)
|+.-|++.+. +.|+ ..++..+-.+|...+ .+..+|..+|++..+...+ ....|+..+|..-+.... +
T Consensus 54 AisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------k 125 (186)
T PF06552_consen 54 AISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA------K 125 (186)
T ss_dssp HHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH------T
T ss_pred HHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------h
Confidence 3333444443 5676 356666666665443 1333444444443332111 125688888887776664 3
Q ss_pred HHHHHHHHHhCC
Q 003946 724 ANEVVAMMEEGK 735 (784)
Q Consensus 724 A~~l~~~m~~~g 735 (784)
|-++..++.+.+
T Consensus 126 ap~lh~e~~~~~ 137 (186)
T PF06552_consen 126 APELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHSS
T ss_pred hHHHHHHHHHHH
Confidence 555555555543
No 321
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=64.40 E-value=14 Score=22.65 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 706 ELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 706 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566677778888888888888877765
No 322
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.18 E-value=72 Score=28.13 Aligned_cols=46 Identities=0% Similarity=0.012 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003946 632 DWNNVIHFFCKKRL-MQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA 677 (784)
Q Consensus 632 ~y~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 677 (784)
.|.+++.+.+...- ---+..+|+-|.+.+.+++..-|..+|.++.+
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 35555555544333 22334455555554555555555555555544
No 323
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=63.83 E-value=9.8 Score=21.96 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 003946 708 LDSVLYTFVRGGFFARANEVVA 729 (784)
Q Consensus 708 ~~~li~~~~~~g~~~~A~~l~~ 729 (784)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456677777777777777765
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.58 E-value=52 Score=31.08 Aligned_cols=62 Identities=11% Similarity=-0.033 Sum_probs=49.4
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003946 255 TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEA 317 (784)
Q Consensus 255 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 317 (784)
|.+..++.+.+.+...+|+...++=++.. +-|..+...++..||-.|++++|..-++.....
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 45667788889999999999988877654 345677888999999999999998777666553
No 325
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.93 E-value=4.7e+02 Score=34.40 Aligned_cols=62 Identities=10% Similarity=-0.041 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 665 AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 665 ~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
..+|....+.+..+| .++.|...+-...+ .+ -+..+---...+...|+...|..++++-.+.
T Consensus 1670 ge~wLqsAriaR~aG-~~q~A~nall~A~e----~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAG-HLQRAQNALLNAKE----SR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHHhhhh----cc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 457888888888889 99999887766655 22 3445556677788899999999999888755
No 326
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.57 E-value=26 Score=24.04 Aligned_cols=35 Identities=9% Similarity=0.168 Sum_probs=29.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 714 TFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFL 748 (784)
Q Consensus 714 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 748 (784)
...+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34567888899999999999999999988888764
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.10 E-value=1e+02 Score=32.70 Aligned_cols=132 Identities=8% Similarity=-0.016 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHH
Q 003946 555 QLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWN 634 (784)
Q Consensus 555 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~ 634 (784)
.|...-...-|.-....|++..|-+-+....... |.++...-.......+.|+++.+.+.+...... +.....+-.
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~ 361 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLR 361 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 635 NVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 635 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
+++...-+.|++++|..+-+-|+...++ ++.........-...| -+|++...|+++
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~-~~d~~~~~wk~~ 417 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQ-LFDKSYHYWKRV 417 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHh-HHHHHHHHHHHH
No 328
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.80 E-value=47 Score=28.17 Aligned_cols=52 Identities=6% Similarity=0.051 Sum_probs=43.1
Q ss_pred HHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCh
Q 003946 271 KAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSD 322 (784)
Q Consensus 271 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~ 322 (784)
|..+-++.+....+.|++.+.-.-+.+|-+.+++..|.++|+-++.+..+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k 118 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQK 118 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHH
Confidence 4555666677778899999999999999999999999999999988754443
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=61.66 E-value=1.9 Score=38.21 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=24.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003946 495 ITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLR 547 (784)
Q Consensus 495 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 547 (784)
|..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444444444444455555444333344555555555555544444444444
No 330
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=61.13 E-value=1.8e+02 Score=29.01 Aligned_cols=102 Identities=5% Similarity=0.033 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003946 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL-GHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMK 693 (784)
Q Consensus 615 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~ 693 (784)
++.+-+....+-.++..+...+|..++..+++.+-.++++.-... +..-|...|..+|......| +..-...+.++-.
T Consensus 187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sg-D~~~~~kiI~~Gh 265 (292)
T PF13929_consen 187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESG-DQEVMRKIIDDGH 265 (292)
T ss_pred HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcC-CHHHHHHHhhCCC
Confidence 333444433334456666777888888888888887777766554 44457777888888888888 7666555554310
Q ss_pred h-cccCCCCCCCHHHHHHHHHHHHh
Q 003946 694 S-FASSTSMNFDEELLDSVLYTFVR 717 (784)
Q Consensus 694 ~-~~~~~~~~p~~~~~~~li~~~~~ 717 (784)
= -.+..++..+...-..|-..+.+
T Consensus 266 LLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 266 LLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred eEEeeecCCcCCHHHHHHHHHHHHh
Confidence 0 01124555566555555544443
No 331
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.34 E-value=1.2e+02 Score=30.55 Aligned_cols=122 Identities=12% Similarity=0.093 Sum_probs=62.2
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHH
Q 003946 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREV 542 (784)
Q Consensus 463 ~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 542 (784)
..--+.+|.++|++..+.+ ..+|+ +..+.+.--...+.+.+++...-+++-.-|.-+--+.|+..+|
T Consensus 228 Ea~Ti~~AE~l~k~ALka~------e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA 294 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG------ETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREA 294 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH------HHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHH
Confidence 4445667888888887665 22333 1111221122334455554322233334555555678999999
Q ss_pred HHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHH
Q 003946 543 TALLRDARSAGIQLDAS---CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEM 599 (784)
Q Consensus 543 ~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 599 (784)
.+.|+++.+. .|-.. ....||.++....-+.....++.+--+...+......|++
T Consensus 295 ~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTa 352 (556)
T KOG3807|consen 295 VKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTA 352 (556)
T ss_pred HHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHH
Confidence 9999887654 33222 2334666666554444444444433333333333344443
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.89 E-value=18 Score=24.27 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=16.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 003946 711 VLYTFVRGGFFARANEVVAMMEEGK 735 (784)
Q Consensus 711 li~~~~~~g~~~~A~~l~~~m~~~g 735 (784)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566777777777777777766543
No 333
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=57.86 E-value=53 Score=33.10 Aligned_cols=52 Identities=12% Similarity=-0.016 Sum_probs=32.8
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMK 585 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 585 (784)
-|.+.|.+++|+..|..-... .| |.+++..-..+|.+...+..|..=.....
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 477777777777777665543 44 66777666677776666665555444443
No 334
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.82 E-value=1.1e+02 Score=24.99 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003946 467 TKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALL 546 (784)
Q Consensus 467 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 546 (784)
.++|..+-+.+...+ .....+-.+-+..+...|++++|..+.+.+ ..||...|-+|.. .+.|..+++..-+
T Consensus 21 HqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 21 HQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 345555555555443 112222222334455667777777766655 2567777766543 3566666666666
Q ss_pred HHHHHcCCCCCHHH
Q 003946 547 RDARSAGIQLDASC 560 (784)
Q Consensus 547 ~~m~~~g~~p~~~t 560 (784)
.+|..+| .|....
T Consensus 92 ~rla~sg-~p~lq~ 104 (115)
T TIGR02508 92 NRLAASG-DPRLQT 104 (115)
T ss_pred HHHHhCC-CHHHHH
Confidence 6666555 344333
No 335
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.77 E-value=14 Score=31.64 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=27.5
Q ss_pred HhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHH
Q 003946 175 LSKCGLPVPASTILRKLVATEQYPPVTAWSAILAH 209 (784)
Q Consensus 175 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 209 (784)
.-+.|.-.+|..+|..|+++|-.|| .|+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 4456888999999999999999988 57888753
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.16 E-value=1.4e+02 Score=32.88 Aligned_cols=134 Identities=12% Similarity=0.119 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
..+.++.-+.+.|-.++|+++ .+|..-- .....+.|+++.|.++..+. ++..-|..|..+.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA-------NSEVKWRQLGDAA 676 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh-------cchHHHHHHHHHH
Confidence 445566666677776666654 2232211 12234567788887776553 3356788888888
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHH
Q 003946 605 AQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTE 684 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~ 684 (784)
.+.+++..|.+.|..... |..|+-.|...|+.+....+-..-.+.|. -| .-..+|...| ++++
T Consensus 677 l~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N-----~AF~~~~l~g-~~~~ 739 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NN-----LAFLAYFLSG-DYEE 739 (794)
T ss_pred hhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cc-----hHHHHHHHcC-CHHH
Confidence 888888888888877654 67777778888887766666666666553 22 2233455667 8888
Q ss_pred HHHHHHHHHh
Q 003946 685 VTELWGEMKS 694 (784)
Q Consensus 685 a~~~~~~m~~ 694 (784)
..+++.+-.+
T Consensus 740 C~~lLi~t~r 749 (794)
T KOG0276|consen 740 CLELLISTQR 749 (794)
T ss_pred HHHHHHhcCc
Confidence 8887776644
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=54.39 E-value=37 Score=20.67 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
+|..+...|...|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777776666554
No 338
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=53.37 E-value=3.5e+02 Score=29.93 Aligned_cols=381 Identities=10% Similarity=-0.008 Sum_probs=189.8
Q ss_pred hhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHhhc---CCChhhHHHHHHHHHHHHHh
Q 003946 263 CLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYE-RNGRREELRKLQRHIDEAV---NLSDIQFRQFYNCLLSCHLK 338 (784)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~-~~g~~~~A~~l~~~~~~~~---~~~~~~~~~~~~~li~~~~~ 338 (784)
-.+.|..+.+.++|++-+. |++.....|...+..+. ..|+-+...+.|+...... ..+.. .|...|.--..
T Consensus 89 E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~----lWdkyie~en~ 163 (577)
T KOG1258|consen 89 EYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDP----LWDKYIEFENG 163 (577)
T ss_pred HHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccH----HHHHHHHHHhc
Confidence 3467899999999998875 56667777777665544 4578888888998887762 33333 69999998888
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHH
Q 003946 339 FGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVAL 418 (784)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (784)
+++......++++.++......+....-+..+-.-.+...
T Consensus 164 qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~---------------------------------------- 203 (577)
T KOG1258|consen 164 QKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKI---------------------------------------- 203 (577)
T ss_pred cccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhh----------------------------------------
Confidence 9999999999999988543111111111111000000000
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 003946 419 EAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLE-AGKTKELTHFLIKAEKENLQVSHDDAALGHVITL 497 (784)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 497 (784)
....+.+........ .+ ....-..+....+..-+.--.. .+..+++.....+... .--.+
T Consensus 204 l~~~d~~~~l~~~~~-~~-----~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-------------~~~~~ 264 (577)
T KOG1258|consen 204 LLSIDELIQLRSDVA-ER-----SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-------------IHEKV 264 (577)
T ss_pred hcCHHHHHHHhhhHH-hh-----hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-------------HHHHH
Confidence 000000000000000 00 0000000111111111111000 0011111111100000 00011
Q ss_pred HHHcCCHHHHHHHHHHHHHcC---C----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 498 CISLGWLDQAHDLLDEMHLAG---V----RASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIV 570 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~g---~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 570 (784)
+-..-.....+..|+.-.++- + +++..+|+.-+.--.+.|+.+.+..+|++..-- +..=...|--.+.-...
T Consensus 265 ~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~ 343 (577)
T KOG1258|consen 265 YQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMES 343 (577)
T ss_pred HHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHH
Confidence 111112222233333322221 1 234677777788788888888888888877521 01111234444444444
Q ss_pred cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 003946 571 QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVH-DWNNVIHFFCKKRLMQDA 649 (784)
Q Consensus 571 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~y~~li~~~~~~g~~~~A 649 (784)
.|+.+-|..++....+--. +..+.+--.-...+-..|++..|..+++.+.+.. |+.+ .--.-+....+.|..+.+
T Consensus 344 ~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~ 419 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDA 419 (577)
T ss_pred cCchhHHHHHHHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhh
Confidence 4777777766665444332 3333333333334556778889999998888764 4432 122234455677777777
Q ss_pred H---HHHHHHHhCCCCCCHHHHHHHHH-----HHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCC
Q 003946 650 E---KALKRMRSLGHLPNAQTFHSMVT-----GYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGF 720 (784)
Q Consensus 650 ~---~~~~~m~~~g~~p~~~~~~~ll~-----a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~ 720 (784)
. +++....+....+ .+...+.- -+...+ +.+.|..++.++.+ ..+++...|..+++...-.+.
T Consensus 420 ~~~~~l~s~~~~~~~~~--~i~~~l~~~~~r~~~~i~~-d~~~a~~~l~~~~~-----~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 420 NYKNELYSSIYEGKENN--GILEKLYVKFARLRYKIRE-DADLARIILLEAND-----ILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred hHHHHHHHHhcccccCc--chhHHHHHHHHHHHHHHhc-CHHHHHHHHHHhhh-----cCCccHHHHHHHHHHHHhCCc
Confidence 7 3443333321222 22222221 223345 88888888888876 456677778888887776653
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.57 E-value=2.5e+02 Score=28.02 Aligned_cols=75 Identities=11% Similarity=0.190 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cccCCCCCCCHHHHH
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS-FASSTSMNFDEELLD 709 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~-~~~~~~~~p~~~~~~ 709 (784)
++.....|..+|.+.+|.++.++..... +.+...|-.|+..+...| +--.+..-++.+.+ .....|+..+..+++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~g-D~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLG-DEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhc-cchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 4445566667777777777776666531 235556666777777777 65555555544422 112245555544443
No 340
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.24 E-value=1.8e+02 Score=27.21 Aligned_cols=88 Identities=18% Similarity=0.099 Sum_probs=41.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHV-----ITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKA 532 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 532 (784)
...+...+++++|...++..... |....+..+ -......|.+++|...++.....+.. ......--+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~-----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDi 168 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ-----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDI 168 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc-----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhH
Confidence 34455666666666666554422 111112222 23344555566666655555443321 1222223344
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 003946 533 YIEANRPREVTALLRDARSA 552 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~ 552 (784)
+...|+-++|..-|+...+.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 169 LLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHcCchHHHHHHHHHHHHc
Confidence 55555566666555555544
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.38 E-value=20 Score=24.14 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.0
Q ss_pred HHHHHhhCCCCccHHHHHHHHhhcC
Q 003946 171 LSLGLSKCGLPVPASTILRKLVATE 195 (784)
Q Consensus 171 li~~~~~~g~~~~A~~~~~~m~~~g 195 (784)
|..+|...|+.+.|++++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 6778999999999999999998654
No 342
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=51.12 E-value=46 Score=33.50 Aligned_cols=87 Identities=13% Similarity=-0.028 Sum_probs=55.6
Q ss_pred HhhhcCChhHHHHHHHhhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcC
Q 003946 262 GCLLFETTRKAEQLLDIMPRIGVKA-DSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (784)
-|.+.|.+++|+..|..-+. +.| |.+++..-..+|.+...+..|+.=.......+..... .|..-..+--..|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~K----AYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVK----AYSRRMQARESLG 179 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH----HHHHHHHHHHHHh
Confidence 36688999999999987665 346 8888888888999998888777655555443222111 2444444444445
Q ss_pred ChhHHHHHHHHHHH
Q 003946 341 DLNSASKMVLEMLQ 354 (784)
Q Consensus 341 ~~~~A~~~~~~m~~ 354 (784)
...+|.+-++..++
T Consensus 180 ~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA 193 (536)
T ss_pred hHHHHHHhHHHHHh
Confidence 55555555554443
No 343
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=51.06 E-value=36 Score=20.41 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=10.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 003946 296 HIYERNGRREELRKLQRHIDE 316 (784)
Q Consensus 296 ~~~~~~g~~~~A~~l~~~~~~ 316 (784)
.++.+.|+.++|.+.|+.+.+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 334444555555555554444
No 344
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.40 E-value=4.5e+02 Score=31.16 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKEN---LQVSHDDAALGHVITLCISLGWL--DQAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~ 526 (784)
.-|..|+.-|...|+.++|++++.+..... .+..++. +--++.-.-+.+.. +...++-+...+....-...++
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~--~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDG--LEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhh--HHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 468899999999999999999999987632 1011222 33355555555543 5555555554443211111111
Q ss_pred H------------HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 527 A------------SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIV 570 (784)
Q Consensus 527 ~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 570 (784)
. .-+-.|.+....+-+..+++.+....-.++..-.+.++..|++
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1 1233466667777788888887655445677777777777764
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=49.61 E-value=2.8e+02 Score=27.70 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHH
Q 003946 667 TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE-----GKMFIDKY 741 (784)
Q Consensus 667 ~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~ 741 (784)
+++.+..+|...| .+.+|.++.+..... -+.+...|-.|+..|+..|+--.|.+-+++|.+ .|+..|..
T Consensus 281 llgkva~~yle~g-~~neAi~l~qr~ltl-----dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAG-KPNEAIQLHQRALTL-----DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcC-ChHHHHHHHHHHhhc-----ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 4456667899999 999999999988762 233667788999999999998888887777753 36666655
Q ss_pred HHH
Q 003946 742 KYR 744 (784)
Q Consensus 742 ~~~ 744 (784)
.++
T Consensus 355 iee 357 (361)
T COG3947 355 IEE 357 (361)
T ss_pred HHH
Confidence 443
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=49.46 E-value=1.9e+02 Score=25.68 Aligned_cols=61 Identities=16% Similarity=0.333 Sum_probs=38.0
Q ss_pred HHHHHHHHHH---HHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 524 SVYASLLKAY---IEANRPREVTALLRDARSAGIQLDAS---CYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 524 ~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
.+.+.||+.. ...++.+++..+++.|.-. .|+.. ++-..+ +...|++++|+.+|+++.+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 3444444443 3467788888888888654 44433 333333 456688888888888877665
No 347
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.39 E-value=65 Score=22.11 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=23.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 640 FCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVT 673 (784)
Q Consensus 640 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 673 (784)
..+.|-.+++..++++|.+.|+.-+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3556667777777777777777777776666554
No 348
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=48.22 E-value=2.3e+02 Score=28.09 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=61.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 456 KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE 535 (784)
Q Consensus 456 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 535 (784)
.=|.++++.+++.+++...-+--+.-..++|.. .-.-|-.|.+.+++..+.++-..-.+..-.-+..-|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 347889999999988776655443322134443 555666788999999999888877754333344557777777655
Q ss_pred -----cCChHHHHHHH
Q 003946 536 -----ANRPREVTALL 546 (784)
Q Consensus 536 -----~g~~~~A~~~~ 546 (784)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 48889998877
No 349
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=47.78 E-value=2.3e+02 Score=28.15 Aligned_cols=16 Identities=6% Similarity=0.009 Sum_probs=7.4
Q ss_pred HHHHHhcCCHHHHHHH
Q 003946 637 IHFFCKKRLMQDAEKA 652 (784)
Q Consensus 637 i~~~~~~g~~~~A~~~ 652 (784)
|.+++..+++.+++..
T Consensus 90 IQALAEmnrWreVLsW 105 (309)
T PF07163_consen 90 IQALAEMNRWREVLSW 105 (309)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3444444444444443
No 350
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.49 E-value=72 Score=29.87 Aligned_cols=56 Identities=7% Similarity=-0.056 Sum_probs=39.5
Q ss_pred HcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003946 677 AIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFI 738 (784)
Q Consensus 677 ~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 738 (784)
... +.+......+...+. ....|++.+|..++.++...|+.++|.++..++.. .-|
T Consensus 120 ~~~-~~~~l~~~~~~a~~~---l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 120 LPP-DPEMLEAYIEWAERL---LRRRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred CCC-CHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 444 555444444444442 34578899999999999999999999999888886 355
No 351
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.45 E-value=46 Score=24.38 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003946 540 REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMK 585 (784)
Q Consensus 540 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 585 (784)
+...++++.++.. +-|-.-.--+|.+|...|++++|.++.+++.
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444332 2344444445555556666666655555544
No 352
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.06 E-value=2.4e+02 Score=27.22 Aligned_cols=109 Identities=16% Similarity=0.057 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhh
Q 003946 202 AWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPR 281 (784)
Q Consensus 202 ~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 281 (784)
.|...+.++.... .+++++|++++- .- .+.|+-.. -++.++...|+.+.|+.+++.+.-
T Consensus 78 ~~~~~~~g~W~LD------~~~~~~A~~~L~--~p-----------s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p 136 (226)
T PF13934_consen 78 KYIKFIQGFWLLD------HGDFEEALELLS--HP-----------SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP 136 (226)
T ss_pred HHHHHHHHHHHhC------hHhHHHHHHHhC--CC-----------CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC
Confidence 3556677766543 388999999887 22 12343332 388888889999999999988643
Q ss_pred CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcC
Q 003946 282 IGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 282 ~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (784)
.. .+......++.. ..++.+.+|...-+........ . .+..++..+....
T Consensus 137 ~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~--~----l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 137 PL--SSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRR--R----LFEQLLEHCLEEC 186 (226)
T ss_pred CC--CCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhH--H----HHHHHHHHHHHHh
Confidence 22 122223333334 6678999998877766553211 1 4777777766443
No 353
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.90 E-value=47 Score=33.14 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=33.4
Q ss_pred CCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003946 700 SMNFDEEL-LDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRT 745 (784)
Q Consensus 700 ~~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 745 (784)
.+.||.+. |+..|..-.+.|++++|+++++|.++.|+.--..+|-.
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34556655 66888888888888888888888888887655555443
No 354
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.81 E-value=1.5e+02 Score=31.73 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=27.2
Q ss_pred HHHHHhhhcCChhHHHHHHHhhhhCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 258 IALAGCLLFETTRKAEQLLDIMPRIGVKADSN--LLIIMAHIYERNGRREELRKLQRH 313 (784)
Q Consensus 258 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~~~~li~~~~~~g~~~~A~~l~~~ 313 (784)
+.+...++.|+.+-+. .+.+.|..|+.. ...+.+...++.|+.+.+..+++.
T Consensus 37 tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 37 SPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred CHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence 3455555667765433 334445444432 122345556677777776666653
No 355
>PRK09687 putative lyase; Provisional
Probab=46.81 E-value=3.2e+02 Score=27.49 Aligned_cols=98 Identities=13% Similarity=-0.037 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 003946 633 WNNVIHFFCKKR-LMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSV 711 (784)
Q Consensus 633 y~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~l 711 (784)
-..-+.++++.+ ..+.+...+..+.. .+|...-...+.++.+.+ +. .+...+-+..+ . ++ .....
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~-~~-~av~~Li~~L~----~---~~--~~~~a 241 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRK-DK-RVLSVLIKELK----K---GT--VGDLI 241 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccC-Ch-hHHHHHHHHHc----C---Cc--hHHHH
Confidence 333444444432 13345555555553 345555556666666666 53 33333333332 1 11 12345
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 712 LYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 712 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
+.++...|. .+|...+.++.+. .||..+-...+
T Consensus 242 ~~ALg~ig~-~~a~p~L~~l~~~--~~d~~v~~~a~ 274 (280)
T PRK09687 242 IEAAGELGD-KTLLPVLDTLLYK--FDDNEIITKAI 274 (280)
T ss_pred HHHHHhcCC-HhHHHHHHHHHhh--CCChhHHHHHH
Confidence 666666666 3566666666653 34555444433
No 356
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=46.74 E-value=2.4e+02 Score=26.02 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=34.0
Q ss_pred HHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc-----------HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 003946 576 GALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE-----------AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKR 644 (784)
Q Consensus 576 ~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~-----------~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g 644 (784)
+|+.-|++..... |..+.++..+..++...+. ++.|.+.|+.... ..|+...|+.-+....
T Consensus 53 dAisK~eeAL~I~--P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~--- 124 (186)
T PF06552_consen 53 DAISKFEEALKIN--PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMAA--- 124 (186)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHH---
Confidence 3344444444433 6667777777777665541 3333333444333 2355555555555432
Q ss_pred CHHHHHHHHHHHHhC
Q 003946 645 LMQDAEKALKRMRSL 659 (784)
Q Consensus 645 ~~~~A~~~~~~m~~~ 659 (784)
+|-++..++.+.
T Consensus 125 ---kap~lh~e~~~~ 136 (186)
T PF06552_consen 125 ---KAPELHMEIHKQ 136 (186)
T ss_dssp ---THHHHHHHHHHS
T ss_pred ---hhHHHHHHHHHH
Confidence 344444444444
No 357
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.36 E-value=1.2e+02 Score=24.01 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=46.9
Q ss_pred HHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHH
Q 003946 271 KAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASK 347 (784)
Q Consensus 271 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 347 (784)
.+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. +++. -+..+++++-..|.-+-|.+
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~-------aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG-------WFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc-------HHHHHHHHHHHcCchhhhhc
Confidence 34567777877774 333444444333346689999999999998 4433 38899999999888776654
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.87 E-value=3.1e+02 Score=26.88 Aligned_cols=195 Identities=13% Similarity=0.134 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH---cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEK---ENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-------- 520 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-------- 520 (784)
.+.|++++.-..+.+.+...++++.-.. ...+-+.+-.|-.-+...|...|++.+..+++.++..+.-.
T Consensus 106 KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k 185 (440)
T KOG1464|consen 106 KSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK 185 (440)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh
Confidence 4555555555555554444444333211 00001344444556777788888888888888887754211
Q ss_pred ---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH-----HcCChhHHHH-HHHHhH---hc
Q 003946 521 ---ASSSVYASLLKAYIEANRPREVTALLRDARSA-GIQLDASCYEALLQSKI-----VQKDTPGALH-LFKEMK---ES 587 (784)
Q Consensus 521 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~-----~~g~~~~A~~-~~~~m~---~~ 587 (784)
.-..+|..=|.+|....+-..-..++++.... ..-|.+.... +|.-|+ +.|++++|-. +|+... +.
T Consensus 186 KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 186 KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 12467888889999888888888888876421 1234444433 333333 4567777653 333332 23
Q ss_pred CCCC-CcHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003946 588 KIPR-SGHQEFEMLVKGCAQNHEAGLMAKLLQEVK-EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKAL 653 (784)
Q Consensus 588 ~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 653 (784)
|-+. ....-|-.|...+.++|- .-|+.-. +-+...|.+.+.+.|+.+|.... ..+-++++
T Consensus 265 GspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~Nd-I~eFE~Il 326 (440)
T KOG1464|consen 265 GSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNND-IIEFERIL 326 (440)
T ss_pred CCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhccc-HHHHHHHH
Confidence 4211 111224444444444440 0011000 01113456788899999987643 33333333
No 359
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=44.81 E-value=3.7e+02 Score=27.74 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 486 HDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRA---SSSVYASLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 486 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
....+|..+...+.+.|.++.|...+..+...+... +..+.-.-+..+-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444567777777788888888888877777643211 233333445556667777777777777665
No 360
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.75 E-value=86 Score=29.36 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 626 IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 626 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
..|+...|..++..+...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346666677777777777777777777776665
No 361
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=44.17 E-value=5.4e+02 Score=29.39 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=61.1
Q ss_pred chhhHHHHHHHhh-hcCChhHHHHHHHhhhhCCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-Chhh
Q 003946 252 NTNTFNIALAGCL-LFETTRKAEQLLDIMPRIGVKADS-----NLLIIMAHIYERNGRREELRKLQRHIDEAVNL-SDIQ 324 (784)
Q Consensus 252 ~~~~~~~ll~~~~-~~g~~~~A~~l~~~m~~~g~~pd~-----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-~~~~ 324 (784)
+..++-.+...+. ...++++|...+++.....-.++. .....++..+.+.+... |.+.++...+.... ....
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3445555666665 678999999999876533222222 23345677777777777 88888887665222 1111
Q ss_pred HHHHHHHH-HHHHHhcCChhHHHHHHHHHHHH
Q 003946 325 FRQFYNCL-LSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 325 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
....+.-+ +..+...++...|.+.++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~ 168 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQL 168 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 11123333 33333347888899888877763
No 362
>PRK10941 hypothetical protein; Provisional
Probab=43.78 E-value=3e+02 Score=27.40 Aligned_cols=72 Identities=14% Similarity=-0.101 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 003946 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNN 635 (784)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~ 635 (784)
+.+-.+|.+.++++.|+.+.+.+.... |+++.-+.--.-.|.+.|.+..|..-++...+..+-.|+......
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 344445555555555555555555433 444444444444455555555555544444444333344433333
No 363
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.18 E-value=55 Score=23.07 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=24.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 711 VLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFL 748 (784)
Q Consensus 711 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 748 (784)
+.-++.+.|++++|.+..+.+.+ +.|+..-...|-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 45567788888888888888877 5777777666653
No 364
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.52 E-value=3.7e+02 Score=26.74 Aligned_cols=137 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHhhhcCChhHHHHHHHhhhhCCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCChhhHHHHHH
Q 003946 259 ALAGCLLFETTRKAEQLLDIMPRIGVKADS-------NLLIIMAHIYERNGRREELRKLQRHIDEA-VNLSDIQFRQFYN 330 (784)
Q Consensus 259 ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~~~~~~~~~~~ 330 (784)
+.+-..+.+++++|+..+.++...|+.-|. .+..-+...|...|+.....+......+. .....+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHh-cCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhh
Q 003946 331 CLLSCHLK-FGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDF 409 (784)
Q Consensus 331 ~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (784)
+||..+-. ...++.-+.+.....+-..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~---------------------------------------------------- 116 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWAD---------------------------------------------------- 116 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHH----------------------------------------------------
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 410 TKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKE 480 (784)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 480 (784)
.+-+.++...++. -+|..+-+.|.+.+|+.+...+..+
T Consensus 117 ----------rEkr~fLr~~Le~-----------------------Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 117 ----------REKRKFLRLELEC-----------------------KLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred ----------HHHHHHHHHHHHH-----------------------HHHHHHHhcccHHHHHHHHHHHHHH
No 365
>PRK09687 putative lyase; Provisional
Probab=40.86 E-value=3.9e+02 Score=26.84 Aligned_cols=234 Identities=11% Similarity=0.074 Sum_probs=150.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWL----DQAHDLLDEMHLAGVRASS 523 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~~~ 523 (784)
.+|.......+.++...|. +++...+..+.. .+|...-...+.++++.|+. +++..++..+... .++.
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~-----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS-----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh-----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 6777788888888888886 344455555543 34666677788888888873 4677777776443 3677
Q ss_pred HHHHHHHHHHHHcCCh-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHH
Q 003946 524 SVYASLLKAYIEANRP-----REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFE 598 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 598 (784)
.+-...+.+++..+.. ..+...+..... .++..+-...+.++++.++ ++++..+-.+.+. ++...-.
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~ 177 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRN 177 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHH
Confidence 7777777777776532 233344433333 4577777788888888876 5677777666653 2344556
Q ss_pred HHHHHHHhcC-cHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003946 599 MLVKGCAQNH-EAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA 677 (784)
Q Consensus 599 ~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 677 (784)
..+.++++.+ +...+...+..+... ++..+-..-+.++++.|+ ..|+..+-+..+.+ + .....+.++..
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ 247 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHh
Confidence 6666666653 234566666555533 466677888899999998 46776666666543 3 23467788888
Q ss_pred cCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHH
Q 003946 678 IGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTF 715 (784)
Q Consensus 678 ~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~ 715 (784)
.| .. +|...+..+.+ -.||..+-...+.++
T Consensus 248 ig-~~-~a~p~L~~l~~------~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 248 LG-DK-TLLPVLDTLLY------KFDDNEIITKAIDKL 277 (280)
T ss_pred cC-CH-hHHHHHHHHHh------hCCChhHHHHHHHHH
Confidence 88 64 67777777764 124555544444444
No 366
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=40.82 E-value=2e+02 Score=24.67 Aligned_cols=45 Identities=9% Similarity=0.294 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 649 AEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 649 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
..+-++....-.+.|++.....-++||.+.+ ++-.|.++|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvN-Dfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVN-DFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhc-cHHHHHHHHHHHHH
Confidence 3344444444456666666666666666666 66666666666654
No 367
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=40.09 E-value=4.4e+02 Score=27.25 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhcCChhHHH
Q 003946 328 FYNCLLSCHLKFGDLNSAS 346 (784)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~ 346 (784)
++..+.++.++.|.+++++
T Consensus 45 ~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhccchhhhhhhHHHHHHH
Confidence 3455555555555544443
No 368
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.93 E-value=84 Score=22.98 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003946 487 DDAALGHVITLCISLGWLDQAHDLLDEMHL 516 (784)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 516 (784)
|-.---.+|.++...|++++|.++.+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344456666666666666666665543
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=39.85 E-value=77 Score=24.49 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcCChhHHHHH
Q 003946 328 FYNCLLSCHLKFGDLNSASKM 348 (784)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~ 348 (784)
+...|+.+|+.-|++.++++.
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554443
No 370
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=38.15 E-value=62 Score=18.32 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
|..+...|...|++++|...+++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 45555556666666666666655543
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.86 E-value=2e+02 Score=22.85 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=6.2
Q ss_pred CChhHHHHHHHHhH
Q 003946 572 KDTPGALHLFKEMK 585 (784)
Q Consensus 572 g~~~~A~~~~~~m~ 585 (784)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 372
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.22 E-value=2.9e+02 Score=24.08 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHcC---ChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003946 556 LDASCYEALLQSKIVQK---DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ 624 (784)
Q Consensus 556 p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 624 (784)
+...+--.+.-++.+.. +..+.+.+++++.+...+.........|.-++.+.++++.+.++.+.+.+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 33344444444444433 4455666777666533222223334444556667777777777666666543
No 373
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.89 E-value=4.4e+02 Score=25.95 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=56.3
Q ss_pred cCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCC
Q 003946 447 LQPTEKIYIKLVKAF-LEAGKTKELTHFLIKAEKENL-QVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL---AGVRA 521 (784)
Q Consensus 447 ~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~ 521 (784)
-.||+..-|..-.+- .+...+++|+.-|.+..+..+ --...-...--+|....+.|++++..+.|.+|.. +.+..
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 466665444332221 244578889988888776431 0112223344567777788888888888888764 23332
Q ss_pred C--HHHHHHHHHHHHHcCChHHHHHHHH
Q 003946 522 S--SSVYASLLKAYIEANRPREVTALLR 547 (784)
Q Consensus 522 ~--~~~~~~li~~~~~~g~~~~A~~~~~ 547 (784)
| ..+.|++++--+.+.+.+--..+++
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYe 129 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYE 129 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 2 3345555555555555554444444
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=35.64 E-value=1.3e+02 Score=23.27 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=27.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCCHHHHHHHH
Q 003946 642 KKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVTGYAAIGGKYTEVTELW 689 (784)
Q Consensus 642 ~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~~a~~~~ 689 (784)
...+.++|+..+...+++-..|. -.++..++.+|+..| ++.+++.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~G-kyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWG-KYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44556667777766666533322 235566667777777 666665544
No 375
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=34.84 E-value=6.4e+02 Score=27.55 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL 564 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 564 (784)
+.|.....+++..++......-+..+-.+|...| -+...+-.++..|... .-++-..+++++.+..+ |.....--
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 4455556666666666666666666666776655 3556666677777666 34556666666665533 33333333
Q ss_pred HHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 003946 565 LQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ--NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK 642 (784)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~ 642 (784)
+.-+...++.+.+..+|.+....-++........-+-.-+-. ..+.+....+...+....+...-.+.+.-+-.-|..
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 333333366666666666665544321111111111111111 234555555555555554444444555555555666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 003946 643 KRLMQDAEKALKRMRSL 659 (784)
Q Consensus 643 ~g~~~~A~~~~~~m~~~ 659 (784)
..++++|++++..+++.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 66666666666665554
No 376
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.61 E-value=3.9e+02 Score=24.97 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=14.8
Q ss_pred HhcCChHHHHHHHHHHHh
Q 003946 716 VRGGFFARANEVVAMMEE 733 (784)
Q Consensus 716 ~~~g~~~~A~~l~~~m~~ 733 (784)
.+.|++++|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 366889999999998875
No 377
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.46 E-value=2.7e+02 Score=23.12 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 466 KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTAL 545 (784)
Q Consensus 466 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 545 (784)
..++|..+.+.+...+ .....+--+-+..+.+.|++++|. .. ......||...|-+|.. .+.|..+++..-
T Consensus 21 cH~EA~tIa~wL~~~~---~~~E~v~lIr~~sLmNrG~Yq~AL---l~-~~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG---EMEEVVALIRLSSLMNRGDYQEAL---LL-PQCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp -HHHHHHHHHHHHHTT---TTHHHHHHHHHHHHHHTT-HHHHH---HH-HTTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhhHHHHHHH---Hh-cccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 4567777777777665 333333333445566777777771 11 11123467777665533 467777777777
Q ss_pred HHHHHHcC
Q 003946 546 LRDARSAG 553 (784)
Q Consensus 546 ~~~m~~~g 553 (784)
+.++..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 77665444
No 378
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.29 E-value=5.2e+02 Score=26.34 Aligned_cols=110 Identities=11% Similarity=0.001 Sum_probs=67.3
Q ss_pred hhHHHHHHHHhHhcCCC---CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003946 574 TPGALHLFKEMKESKIP---RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAE 650 (784)
Q Consensus 574 ~~~A~~~~~~m~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 650 (784)
.++|.+.|++....+.. +.++.....++....+.|+.+.-..+++..... ++......++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~----~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS----TSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT----STHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc----CCHHHHHHHHHhhhccCCHHHHH
Confidence 45678888888775332 234556677777777777766655666665543 36667889999999999998888
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCCH--HHHHHHHH
Q 003946 651 KALKRMRSLG-HLPNAQTFHSMVTGYAAIGGKY--TEVTELWG 690 (784)
Q Consensus 651 ~~~~~m~~~g-~~p~~~~~~~ll~a~~~~g~~~--~~a~~~~~ 690 (784)
++++.....+ +++.. . ..++.++...+ .. +.+..++.
T Consensus 222 ~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~-~~~~~~~~~~~~ 261 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQD-I-RYVLAGLASSN-PVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHHCTSTS-TTT-H-HHHHHHHH-CS-TTCHHHHHHHHH
T ss_pred HHHHHHcCCcccccHH-H-HHHHHHHhcCC-hhhHHHHHHHHH
Confidence 9999888864 54443 2 34455555333 33 55555554
No 379
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.16 E-value=7.2e+02 Score=27.96 Aligned_cols=118 Identities=15% Similarity=-0.005 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCChHHH
Q 003946 466 KTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS-LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI--EANRPREV 542 (784)
Q Consensus 466 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A 542 (784)
+.+.|..++.+....| .|+...+...+.-... ..+...|.++|....+.|.. ....+-+++.... -..+...|
T Consensus 308 d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHH
Confidence 6677888888888887 6777644433333332 24578899999999888843 2222222222222 33467888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC
Q 003946 543 TALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI 589 (784)
Q Consensus 543 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 589 (784)
..++.+.-+.| .|-..--...+..+.. +..+.+.-.+..+.+.|.
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 88888888877 3443333333444444 677777777766666654
No 380
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=33.84 E-value=8.5e+02 Score=28.68 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=47.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHH---HH-----HHcCCHHHHHHHHHHHHHc----CCCCCHHHH
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT---LC-----ISLGWLDQAHDLLDEMHLA----GVRASSSVY 526 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~---~~-----~~~g~~~~a~~~~~~m~~~----g~~~~~~~~ 526 (784)
.......++++|..++.+....-. .|+...-..+.. +. ...|+++.|.++-+..... -..+.+..+
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~--~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLK--APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhC--cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 344566777888888777765431 222221111221 11 1246666666655554432 223345555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 003946 527 ASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
..+..+..-.|++++|..+..+..
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHH
Confidence 666666666677777766665544
No 381
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=33.42 E-value=1.7e+02 Score=20.67 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=13.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003946 638 HFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666 (784)
Q Consensus 638 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 666 (784)
-++.+.|++++|.+..+.+++ +.|+..
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 344555566666666555555 345443
No 382
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.30 E-value=8.1e+02 Score=28.32 Aligned_cols=63 Identities=11% Similarity=-0.013 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 003946 295 AHIYERNGRREELRKLQRHIDEAVNLS-DIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEAR 360 (784)
Q Consensus 295 i~~~~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 360 (784)
|+-+.+.+.+++|..+-+......+.. ... ++-..|+.+.-.|++++|-...-.|......-|
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~k---v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eW 426 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKK---VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEW 426 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHH---HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHH
Confidence 455677778888887776655532211 111 688899999999999999998888887665444
No 383
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.09 E-value=4.6e+02 Score=25.34 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=9.0
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 003946 494 VITLCISLGWLDQAHDLLDE 513 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~ 513 (784)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444444444444444444
No 384
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.22 E-value=4.8e+02 Score=25.30 Aligned_cols=188 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003946 506 QAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMK 585 (784)
Q Consensus 506 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 585 (784)
++.++..+..+.......+. .+.-.+++++|.++|.+.- +.|--..+|+.|=..|.+.-
T Consensus 3 ~a~~l~k~AEkK~~~s~gF~------lfgg~~k~eeAadl~~~Aa---------------n~yklaK~w~~AG~aflkaA 61 (288)
T KOG1586|consen 3 DAVQLMKKAEKKLNGSGGFL------LFGGSNKYEEAAELYERAA---------------NMYKLAKNWSAAGDAFLKAA 61 (288)
T ss_pred cHHHHHHHHHHhcccCCccc------ccCCCcchHHHHHHHHHHH---------------HHHHHHHhHHHHHHHHHHHH
Q ss_pred h----cCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003946 586 E----SKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661 (784)
Q Consensus 586 ~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 661 (784)
+ .|-..+...+|.-..++|-+.. +..-+.....-|..|...|++..|-+..-++-+. .
T Consensus 62 ~~h~k~~skhDaat~YveA~~cykk~~-----------------~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEi-y 123 (288)
T KOG1586|consen 62 DLHLKAGSKHDAATTYVEAANCYKKVD-----------------PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEI-Y 123 (288)
T ss_pred HHHHhcCCchhHHHHHHHHHHHhhccC-----------------hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHH-H
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003946 662 LPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKY 741 (784)
Q Consensus 662 ~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 741 (784)
+.+..-+.--|..|...+ +|-...+.-...-+ .+--....-+..+++.+|.++|++.....+..+..
T Consensus 124 Esdl~d~ekaI~~YE~Aa-e~yk~ees~ssANK------------C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 124 ESDLQDFEKAIAHYEQAA-EYYKGEESVSSANK------------CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred hhhHHHHHHHHHHHHHHH-HHHcchhhhhhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Q ss_pred HHHH
Q 003946 742 KYRT 745 (784)
Q Consensus 742 ~~~~ 745 (784)
-|..
T Consensus 191 Kys~ 194 (288)
T KOG1586|consen 191 KYSA 194 (288)
T ss_pred HhHH
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.16 E-value=2.6e+02 Score=22.41 Aligned_cols=20 Identities=15% Similarity=-0.024 Sum_probs=10.9
Q ss_pred HHHHcCChhHHHHHHHHhHh
Q 003946 567 SKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 567 ~~~~~g~~~~A~~~~~~m~~ 586 (784)
.....|++++|+..+++..+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34445666666666555543
No 386
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.26 E-value=92 Score=31.19 Aligned_cols=44 Identities=25% Similarity=0.220 Sum_probs=33.1
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 626 IDCGVH-DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 626 ~~p~~~-~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
+.||.. -|+.-|..-.+.|++++|+.+++|.++.|+.--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 344544 46788999999999999999999999888765555543
No 387
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.23 E-value=3.2e+02 Score=23.48 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=22.2
Q ss_pred HHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003946 576 GALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618 (784)
Q Consensus 576 ~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 618 (784)
.+.++|+.|...|+...-...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555666666555544444445555555555555555555444
No 388
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.20 E-value=5.9e+02 Score=26.02 Aligned_cols=135 Identities=10% Similarity=0.084 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC
Q 003946 626 IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL-GHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD 704 (784)
Q Consensus 626 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~ 704 (784)
+.-|...+|.|..+ ...++++-.+..++..+. |-.--...+.....-|++.| +.+.|.+.+.+..+.....|.+.|
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqig-Dkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIG-DKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhhcccchh
Confidence 45566666666542 222344444444444332 21112345566677899999 999999999887665444677777
Q ss_pred HHHHHHHH-HHHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhcccccCCchhhHHH
Q 003946 705 EELLDSVL-YTFVRGGFFARANEVVAMMEEGKMFI----DKYKYRTLFLKYHKTLYKGKTPKFQTE 765 (784)
Q Consensus 705 ~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~~~~~li~~~~~~~~~~~a~~~~~~ 765 (784)
...+..=+ -.|....-..+-.+..+.+.++|-.- --.+|..+.|...++.. .|+..+.+
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk--~Aa~Lfld 206 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFK--EAADLFLD 206 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHH--HHHHHHHH
Confidence 76655433 33333333455555556666666433 34566666665555432 45554444
No 389
>PRK09857 putative transposase; Provisional
Probab=29.94 E-value=3.2e+02 Score=27.66 Aligned_cols=67 Identities=10% Similarity=0.096 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003946 668 FHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDK 740 (784)
Q Consensus 668 ~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 740 (784)
+..++......+ +.++..++++.+.+. .....+..-++..-+...|.-+++.++..+|...|+.++.
T Consensus 209 ~~~ll~Yi~~~~-~~~~~~~~~~~l~~~-----~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 209 IKGLFNYILQTG-DAVRFNDFIDGVAER-----SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHHhhcc-ccchHHHHHHHHHHh-----CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 445555555666 776677777776652 2223334445666777777778889999999999987763
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.78 E-value=54 Score=28.26 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=25.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 003946 464 AGKTKELTHFLIKAEKENLQVSHDDAALGHVITLC 498 (784)
Q Consensus 464 ~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 498 (784)
.|.-.+|..+|.+|...| -+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G--~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERG--NPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCC--CCCcc--HHHHHHHh
Confidence 356677899999999999 48887 88888764
No 391
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.78 E-value=4.7e+02 Score=24.52 Aligned_cols=131 Identities=16% Similarity=0.070 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVI--TLCISLGWLDQAHDLLDEMHLAGVRAS--SSVYA 527 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~ 527 (784)
..|..++.+.. .+.. +......++....+ .....++.+|- ..+...|++++|...++......-..+ ..+--
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~--~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANG--KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 45666665553 3333 44555556654431 22222333332 556678888888888887664321111 11222
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
.|.......|.+++|..+++.....+. .......--+.+...|+-++|..-|++....+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 345667777888888888887764322 11112222346677788888888888877765
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.35 E-value=1.1e+02 Score=25.46 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 329 YNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 89999999999999999999988876
No 393
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.19 E-value=1.7e+02 Score=21.72 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=36.1
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 003946 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS 500 (784)
Q Consensus 447 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 500 (784)
+.|....++.++..+++..-+++++..+.+..+.| ..+..+|.--++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g---~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG---SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SS-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHH
Confidence 45666777888888888888888888888888887 4556666666666554
No 394
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.13 E-value=7.1e+02 Score=26.34 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=26.9
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGV--HDWNNVIHFFCK--KRLMQDAEKALKRMRSL 659 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~--~~y~~li~~~~~--~g~~~~A~~~~~~m~~~ 659 (784)
.+++..|.++|+.+... +.++. ..|..+..+|.. .-++++|.+.++.....
T Consensus 144 ~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 144 RYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred cCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455555555555443 21222 234555555543 45677888888776653
No 395
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.13 E-value=5.9e+02 Score=26.15 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH
Q 003946 634 NNVIHFFCKKRLMQDAEKALKRMRS-----LGHLPNA 665 (784)
Q Consensus 634 ~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~ 665 (784)
..+...+...|++.++.+++++..+ .|+.|+.
T Consensus 119 t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 119 TEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 3445555566777777777666665 4555543
No 396
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.03 E-value=9.4e+02 Score=27.70 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=16.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 003946 713 YTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 713 ~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
.+-.-++++.+|.+.-+.|-+.
T Consensus 374 ~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 374 EASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hhhhhccCHHHHHHHHHHHhcc
Confidence 3445567888888888888774
No 397
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.90 E-value=2.5e+02 Score=22.45 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=32.8
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCC--H--HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFD--E--ELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~--~--~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
.+.| ++..|.+.+....+.....+.... . ...-.+.......|++++|.+.+++..+
T Consensus 9 ~~~~-dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSG-DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcC-CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456 777776666655543322222221 1 1222345566677888888888888764
No 398
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.77 E-value=8.9e+02 Score=27.34 Aligned_cols=156 Identities=12% Similarity=0.139 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 449 PTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYAS 528 (784)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 528 (784)
+....++.|+..+- .-+.+...+++.++.. . . ...+..++++....|-.....-+.+.+....+. +...-..
T Consensus 308 ~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~---~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~ 379 (574)
T smart00638 308 PAAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K---K--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQL 379 (574)
T ss_pred chHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C---C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHH
Confidence 34456666666553 3455666777777654 2 1 456777888888888766666666666655443 3333333
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHH-cCCCCCH-------HHHHHHHHHHHHcCCh------hHHHHHHHHhHhcCCCCCc
Q 003946 529 LLKAYIEA-NRPREVTALLRDARS-AGIQLDA-------SCYEALLQSKIVQKDT------PGALHLFKEMKESKIPRSG 593 (784)
Q Consensus 529 li~~~~~~-g~~~~A~~~~~~m~~-~g~~p~~-------~t~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~ 593 (784)
+..+..-. .--.+..+.+.++.+ ..+.+.. .+|.+++.-+|..... ++....+.+.........+
T Consensus 380 ~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 459 (574)
T smart00638 380 LAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD 459 (574)
T ss_pred HHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC
Confidence 33333332 223334444444433 2334443 4455566655544331 2333333332222111112
Q ss_pred HHHHHHHHHHHHhcCcHHH
Q 003946 594 HQEFEMLVKGCAQNHEAGL 612 (784)
Q Consensus 594 ~~~~~~ll~~~~~~~~~~~ 612 (784)
..--...|.++++.|....
T Consensus 460 ~~~~~~~LkaLGN~g~~~~ 478 (574)
T smart00638 460 EEEIQLYLKALGNAGHPSS 478 (574)
T ss_pred chheeeHHHhhhccCChhH
Confidence 2234455666666665433
No 399
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.74 E-value=2.8e+02 Score=27.95 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh----------cC
Q 003946 650 EKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVR----------GG 719 (784)
Q Consensus 650 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~----------~g 719 (784)
.++++.|.+.++.|.-..|.=+.--+.+.= .+.+++.+|+.+.. |+.-|..|+..|+. .|
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF-~lpDvi~lWDsl~s---------D~~rfd~Ll~iCcsmlil~Re~il~~ 332 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEF-PLPDVIRLWDSLLS---------DPQRFDFLLYICCSMLILVRERILEG 332 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccC-CchhHHHHHHHHhc---------ChhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 578888888889998777665554555555 78889999999887 44446667666663 36
Q ss_pred ChHHHHHHHHH
Q 003946 720 FFARANEVVAM 730 (784)
Q Consensus 720 ~~~~A~~l~~~ 730 (784)
++..-.++++.
T Consensus 333 DF~~nmkLLQ~ 343 (370)
T KOG4567|consen 333 DFTVNMKLLQN 343 (370)
T ss_pred chHHHHHHHhc
Confidence 66666666554
No 400
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.36 E-value=2.6e+02 Score=24.71 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=30.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 512 DEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD 573 (784)
Q Consensus 512 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 573 (784)
+.+.+.|++++. --..++..+.+.++.-.|.++++++.+.+...+..|--.-+..+...|-
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344445554433 2234445555555555566666666555544444444444455555553
No 401
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=28.26 E-value=1.3e+02 Score=17.55 Aligned_cols=29 Identities=21% Similarity=0.095 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 302 GRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 302 g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
|+.+.|..+|+.+....+.+.. +|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~----~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE----LWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH----HHHHHHH
Confidence 4567778888887775443322 4666554
No 402
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.83 E-value=5e+02 Score=25.45 Aligned_cols=65 Identities=25% Similarity=0.236 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003946 289 NLLIIMAHIYERNGRREELRKLQRHIDEA--VNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEML 353 (784)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (784)
.....+..-|.+.|++++|.++|+.+... ...-......+...+..++.+.|+.+..+.+--+|.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 44456778899999999999999998553 111111112256778888889999998887765554
No 403
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=26.84 E-value=2e+02 Score=21.01 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=24.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----HcCChhHHHHH
Q 003946 533 YIEANRPREVTALLRDARSAGIQLDASCYEALLQSKI-----VQKDTPGALHL 580 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-----~~g~~~~A~~~ 580 (784)
+...|++-+|.++++++-..-..+....+-.+|.... +.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3456777777777777753322234444555555433 44555555544
No 404
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.58 E-value=1.3e+02 Score=22.26 Aligned_cols=49 Identities=6% Similarity=-0.077 Sum_probs=24.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHh
Q 003946 286 ADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLK 338 (784)
Q Consensus 286 pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (784)
|+...++.+++.+++..-++++...+++..+.+..+.. +|..-+..+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d----~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLD----TFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HH----HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHH
Confidence 44455555555555555555555555555554444333 24444444443
No 405
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.41 E-value=5.9e+02 Score=24.51 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHHcCCCHHHHHHHHHHHH
Q 003946 630 VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP---NAQTFH--SMVTGYAAIGGKYTEVTELWGEMK 693 (784)
Q Consensus 630 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~--~ll~a~~~~g~~~~~a~~~~~~m~ 693 (784)
..-+|.||--|.-...+.+|-+.|. .+.|+.| |..+++ .-|......| +.++|.+....+.
T Consensus 26 ~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G-~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 26 REDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEG-QIEEAIEKVNQLN 91 (228)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhc-cHHHHHHHHHHhC
Confidence 3334455444444444444444443 2233333 233332 3344445555 6666655555443
No 406
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.35 E-value=3.1e+02 Score=25.79 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 290 LLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
..+.++..|.-.|+++.|.+.|.-+.+...++... .|..=+..+.+.+.-....+.|+.|..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~---~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRS---LWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHh---cchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 34455555666666666666666655543333332 455555555555554444455555543
No 407
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=26.34 E-value=3.7e+02 Score=22.10 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=38.1
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 602 KGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
..+.+.|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3455666677776666555 2477777776654 56777777777777777765 44444443
No 408
>PHA02875 ankyrin repeat protein; Provisional
Probab=26.29 E-value=2.8e+02 Score=29.70 Aligned_cols=81 Identities=11% Similarity=-0.019 Sum_probs=39.9
Q ss_pred HHHHHhhhcCChhHHHHHHHhhhhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 003946 258 IALAGCLLFETTRKAEQLLDIMPRIGVKADS--NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSC 335 (784)
Q Consensus 258 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~ 335 (784)
+.+...+..|+.+-+..+++ .|..++. ..-.+.+...+..|+.+-+.-+++.-......+... ..+++..
T Consensus 137 tpLh~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~----~~t~l~~ 208 (413)
T PHA02875 137 SPLHLAVMMGDIKGIELLID----HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNG----CVAALCY 208 (413)
T ss_pred CHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC----CchHHHH
Confidence 34555567788766555544 4443332 112234455667788776665554322211111111 2355555
Q ss_pred HHhcCChhHHH
Q 003946 336 HLKFGDLNSAS 346 (784)
Q Consensus 336 ~~~~g~~~~A~ 346 (784)
.++.|+.+-+.
T Consensus 209 A~~~~~~~iv~ 219 (413)
T PHA02875 209 AIENNKIDIVR 219 (413)
T ss_pred HHHcCCHHHHH
Confidence 56677765433
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.66 E-value=8.2e+02 Score=25.89 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=29.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 003946 499 ISLGWLDQAHDLLDEMHLAGVRASSS--VYASLLKAYIE--ANRPREVTALLRDARS 551 (784)
Q Consensus 499 ~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~ 551 (784)
.+.+++..|.++|+++.+. ++++.. .+..+..+|.. .-++.+|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3566777777777777765 444443 44444455443 3455666666666543
No 410
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.49 E-value=4e+02 Score=23.57 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003946 493 HVITLCISLGWLDQAHDLLDEMHLAG 518 (784)
Q Consensus 493 ~li~~~~~~g~~~~a~~~~~~m~~~g 518 (784)
.++..+.+.++.-.|.++|+++.+.+
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 34444444444444555555554444
No 411
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.23 E-value=5.4e+02 Score=23.90 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=19.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 563 (784)
.+-.|.+.|.+++|.+++++... .|+......
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~ 148 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRM 148 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHH
Confidence 34456777777777777777665 344444333
No 412
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=24.05 E-value=7.4e+02 Score=24.82 Aligned_cols=155 Identities=13% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcC-------CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCH
Q 003946 611 GLMAKLLQEVKEGQ-------RIDCGVHDWNNVIHFFCKKRLMQDA-EKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKY 682 (784)
Q Consensus 611 ~~a~~~~~~~~~~~-------~~~p~~~~y~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~ 682 (784)
+....++.-+.+.+ -++-|..-+|.|+. -+..++++- .++-+.=...|-.--...+..+..-|++.+ +.
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~k--kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~-D~ 131 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLK--KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIM-DI 131 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHH--hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh-hh
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcccccC--Cc
Q 003946 683 TEVTELWGEMKSFASSTSMNFDEEL-LDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKG--KT 759 (784)
Q Consensus 683 ~~a~~~~~~m~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~~~~~--~a 759 (784)
+.+.+...+..+..-..|.+.|... ---|.-.|....-.++-.+..+.|.++|..-+-..---...+++.-..+. .|
T Consensus 132 ~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeA 211 (412)
T COG5187 132 QNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEA 211 (412)
T ss_pred hhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHH
Q ss_pred hhhHHHHHH
Q 003946 760 PKFQTEAQL 768 (784)
Q Consensus 760 ~~~~~~~~~ 768 (784)
+..+.+...
T Consensus 212 a~Ll~d~l~ 220 (412)
T COG5187 212 AILLSDILP 220 (412)
T ss_pred HHHHHHHhc
No 413
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=23.75 E-value=7.9e+02 Score=25.04 Aligned_cols=123 Identities=9% Similarity=0.032 Sum_probs=66.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCChhHH
Q 003946 500 SLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYE--ALLQSKIVQKDTPGA 577 (784)
Q Consensus 500 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A 577 (784)
..--+-+|+++|++..+.+ ..+|+. -+.+...|. ..+.+.++ ..++.+|- -|..+-.+.|+..+|
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~------~~da~~rR--Dtnvl~YIKRRLAMCARklGrlrEA 294 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSP------QHEAQLRR--DTNVLVYIKRRLAMCARKLGRLREA 294 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhcc------chhhhhhc--ccchhhHHHHHHHHHHHHhhhHHHH
Confidence 3344677888888877764 233331 111122222 22334444 33444543 333344578999999
Q ss_pred HHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 003946 578 LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNN 635 (784)
Q Consensus 578 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~ 635 (784)
.+.|+++.+.--...-......|+.+|....-+.++..++-+..+....+.-...|++
T Consensus 295 ~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTa 352 (556)
T KOG3807|consen 295 VKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTA 352 (556)
T ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHH
Confidence 9999988765311111123456788888887777777776555443322233445554
No 414
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=23.16 E-value=2e+02 Score=25.01 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=48.4
Q ss_pred chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 252 NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 252 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
+...|.++|.++.....+...-.++.+..+..-.|+. |..++. ....|++.++.++++.... .|+.
T Consensus 58 ~~A~~~AmliGL~Nr~~ytT~a~~l~Eal~Lp~rP~G--yd~l~~-lvm~G~L~d~~~i~~~cE~-----------~W~G 123 (143)
T PF07827_consen 58 QLAWYGAMLIGLHNRTLYTTSARVLPEALSLPSRPSG--YDELAQ-LVMSGQLTDPEKIYESCEA-----------LWTG 123 (143)
T ss_dssp HHHHHHHHHHHHHCT---SSCCCHHHHHTTSSS--TT--HHHHHH-HHHHTB---HHHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHHhccceeeccccccHHHhcCCCCCcc--HHHHHH-HHhccccCCHHHHHHHHHH-----------HHHH
Confidence 4456888999998888887777788887775444543 334433 4668999999999888776 4888
Q ss_pred HHHHHHhcCC
Q 003946 332 LLSCHLKFGD 341 (784)
Q Consensus 332 li~~~~~~g~ 341 (784)
+..-+.+.|-
T Consensus 124 l~~Wa~~hg~ 133 (143)
T PF07827_consen 124 LVKWAAEHGY 133 (143)
T ss_dssp HHHHHHHHT-
T ss_pred HHHHHHHcCe
Confidence 8877776663
No 415
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=22.70 E-value=7.8e+02 Score=24.59 Aligned_cols=150 Identities=14% Similarity=0.005 Sum_probs=85.7
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---
Q 003946 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS----LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE--- 535 (784)
Q Consensus 463 ~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--- 535 (784)
..+++..+...+......+ .+ .....+...|.. ..+..+|.+.|....+.|. ......|..+|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~--~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~g 124 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DA--AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRG 124 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---Ch--HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCC
Confidence 4456667777777766544 22 223333333332 3457888888887777763 3344445555555
Q ss_pred -cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------ChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh-
Q 003946 536 -ANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQK-------DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ- 606 (784)
Q Consensus 536 -~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~- 606 (784)
..+..+|...|++.-+.|..+...+...+-..|.... +...|...+.++...+. ......+...|.+
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~----~~a~~~lg~~y~~G 200 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGN----PDAQLLLGRMYEKG 200 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcC----HHHHHHHHHHHHcC
Confidence 3478889999998888875433233333333333321 23367777777777662 2334444433332
Q ss_pred ---cCcHHHHHHHHHHHHhcC
Q 003946 607 ---NHEAGLMAKLLQEVKEGQ 624 (784)
Q Consensus 607 ---~~~~~~a~~~~~~~~~~~ 624 (784)
..+..+|...|....+.+
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 236677777777777654
No 416
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.49 E-value=4.2e+02 Score=29.77 Aligned_cols=75 Identities=21% Similarity=0.172 Sum_probs=50.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 456 KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLD------QAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 456 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+|..+|..+|++..+.++++........-+.-...||..|+...+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 79999999999999999998876543112333445788888888888764 3444444433 34467777776
Q ss_pred HHHH
Q 003946 530 LKAY 533 (784)
Q Consensus 530 i~~~ 533 (784)
+.+-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 6553
No 417
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.35 E-value=1.4e+03 Score=27.34 Aligned_cols=220 Identities=17% Similarity=0.119 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG 603 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~ 603 (784)
.-|..|+..|...|+.++|++++.+..+.--.-|... . ...+..++++++... +..+..|...-+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~----~------~~~e~ii~YL~~l~~----~~~~Li~~y~~wv 570 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ----L------DGLEKIIEYLKKLGA----ENLDLILEYADWV 570 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccch----h------hhHHHHHHHHHHhcc----cchhHHHHHhhhh
Confidence 3577888888888888888888888765210001100 0 011222222222211 1111111111111
Q ss_pred HHhcCcHHHHHHHHHH-HH-hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--
Q 003946 604 CAQNHEAGLMAKLLQE-VK-EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG-- 679 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~-~~-~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g-- 679 (784)
+ ..+.+.+.++|-. -+ +...+.|+. +-.|......+-+..+++.+....-.++..-.+.++.-|...-
T Consensus 571 l--~~~p~~gi~Ift~~~~~~~~sis~~~------Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~ 642 (877)
T KOG2063|consen 571 L--NKNPEAGIQIFTSEDKQEAESISRDD------VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLE 642 (877)
T ss_pred h--ccCchhheeeeeccChhhhccCCHHH------HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhh
Confidence 1 1234455555544 00 111122222 2335556666777778887776655556665666666554321
Q ss_pred -----CCHHHHHHH--HHHHHhcc-cCCCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh----------
Q 003946 680 -----GKYTEVTEL--WGEMKSFA-SSTSMNF--------DEELLDSVLYTFVRGGFFARANEVVAMMEE---------- 733 (784)
Q Consensus 680 -----~~~~~a~~~--~~~m~~~~-~~~~~~p--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---------- 733 (784)
++.+++.+. .+.....- ......| ....|.-..-.+.|.|+.++|..++-...+
T Consensus 643 ~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~ 722 (877)
T KOG2063|consen 643 QASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCL 722 (877)
T ss_pred ccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHH
Confidence 012223332 11111100 0111222 233444444455588888888888765553
Q ss_pred ---CCCCCCHHHHHHHHHHHhcc-cccCCchhhHHH
Q 003946 734 ---GKMFIDKYKYRTLFLKYHKT-LYKGKTPKFQTE 765 (784)
Q Consensus 734 ---~g~~pd~~~~~~li~~~~~~-~~~~~a~~~~~~ 765 (784)
...+++...|-+++..+... .+....+..+..
T Consensus 723 ~~y~~~~~~~~~y~~lL~~~l~~~~d~~~~~~~il~ 758 (877)
T KOG2063|consen 723 PQYESDKTNKEIYLTLLRIYLNPIHDYKSGPLYILN 758 (877)
T ss_pred HhccCCCcccHHHHHHHHHHhcchhhccccchhhhh
Confidence 12345788888888766665 233334444444
No 418
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.81 E-value=3.7e+02 Score=22.22 Aligned_cols=61 Identities=10% Similarity=0.221 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCC
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLG--WLDQAHDLLDEMHLAGV 519 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~ 519 (784)
..++..|...++.++|...+.++.... ..+ .....++..+...+ .-+..-.++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~--~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHH--EVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHH--HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHH--HHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 456677888899999999888864221 111 22333444444332 23345566666666654
No 419
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=21.68 E-value=5.7e+02 Score=28.79 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 493 HVITLCISLGWLDQAHDLLDEMHLA--GVRASSSVYASLLKAYIEANRPR------EVTALLRDARSAGIQLDASCYEAL 564 (784)
Q Consensus 493 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~l 564 (784)
+++.+|...|++..+.++++..... |-+.=...+|..|+...+.|.++ .|.+++++. .+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7999999999999999999988754 33334667888889999998754 334444433 356688888888
Q ss_pred HHHHH
Q 003946 565 LQSKI 569 (784)
Q Consensus 565 i~~~~ 569 (784)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 77654
No 420
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=21.58 E-value=5.2e+02 Score=22.16 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003946 306 ELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLE 351 (784)
Q Consensus 306 ~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (784)
++.++|..|...+....... .|..-...+.+.|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~--fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLAL--FYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHH--HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHH--HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88889999888743333221 588888888899999999988864
No 421
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.55 E-value=2.4e+02 Score=23.51 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcC
Q 003946 258 IALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNG 302 (784)
Q Consensus 258 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 302 (784)
++|..+-++...++|+++.+.|.++| ..+...-+.|-..+.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKKG 109 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.49 E-value=4.8e+02 Score=25.53 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=14.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 003946 331 CLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
.++.+|...|+..+|.+-|+.-..
T Consensus 15 ki~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 15 KICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345666667777777666655444
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.29 E-value=1e+03 Score=25.31 Aligned_cols=94 Identities=13% Similarity=0.138 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCCC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA---------GVRAS 522 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~~~ 522 (784)
..+.-+-+-|...|+++.|++.+.+.+.--...+-....|..+|..-.-.|++.....+..+.... .+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 467778889999999999999999965432111223344666666666778888777776666554 13333
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLR 547 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~ 547 (784)
...+..|.....+ ++..|.+.|-
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4445555444433 5555555543
No 424
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.18 E-value=5.3e+02 Score=23.49 Aligned_cols=60 Identities=17% Similarity=0.009 Sum_probs=34.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003946 514 MHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDT 574 (784)
Q Consensus 514 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 574 (784)
+.+.|++++..-. .++..+....+.-.|.++++.+.+.+..++..|.---|..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3455665444333 44455555556667777777777776666666655555555555543
No 425
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.06 E-value=1.3e+03 Score=26.63 Aligned_cols=157 Identities=10% Similarity=0.062 Sum_probs=88.5
Q ss_pred HHHhhCCCCccHHHHHHHHh-hcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCC
Q 003946 173 LGLSKCGLPVPASTILRKLV-ATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKP 251 (784)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p 251 (784)
..|--.|.+++|++.--... .-.+.++...+.+++.-|.. .-.+++.+.++ .-.+. .++.|
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id---------~yi~~~~~~~~--~~~~~-------~~iD~ 128 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCID---------MYIETASETYK--NPEQK-------SPIDQ 128 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHH---------HHHHHHHHHhc--Ccccc-------CCCCH
Confidence 36777788888877654443 23466777777777765443 22334444444 11100 22222
Q ss_pred c-hhhHHHHHHHhhhcCChhHHHHH---------HHh-hhhCCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHHHH
Q 003946 252 N-TNTFNIALAGCLLFETTRKAEQL---------LDI-MPRIGVKADSNLLIIMAHIYERNG-----RREELRKLQRHID 315 (784)
Q Consensus 252 ~-~~~~~~ll~~~~~~g~~~~A~~l---------~~~-m~~~g~~pd~~~~~~li~~~~~~g-----~~~~A~~l~~~~~ 315 (784)
- .-..+-++..|...+++..|+.+ +++ ..+..-.++ ..+.+++.+.... +.+....++....
T Consensus 129 rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~efR~~vlr~lv~~y~ 206 (929)
T KOG2062|consen 129 RLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREFRNKVLRLLVKTYL 206 (929)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 2 22467788888877777766543 333 222222222 3333444443332 3333333344333
Q ss_pred hhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 003946 316 EAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRA 356 (784)
Q Consensus 316 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 356 (784)
....|+ |..+..+|.-..+.+.|.++++++.+.+
T Consensus 207 ~~~~PD-------y~~vc~c~v~Ldd~~~va~ll~kL~~e~ 240 (929)
T KOG2062|consen 207 KLPSPD-------YFSVCQCYVFLDDAEAVADLLEKLVKED 240 (929)
T ss_pred cCCCCC-------eeeeeeeeEEcCCHHHHHHHHHHHHhcc
Confidence 333333 8889999999999999999999998855
No 426
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=20.54 E-value=9e+02 Score=24.50 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhcCChHHH
Q 003946 706 ELLDSVLYTFVRGGFFARA 724 (784)
Q Consensus 706 ~~~~~li~~~~~~g~~~~A 724 (784)
.+|.-|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3466677777777765443
No 427
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=20.11 E-value=6.5e+02 Score=27.95 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=32.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
.|.+...+.|...+|..++.+..... .....++-.+-++|.-..++++|++.|++..+..
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 34444455555556666655554433 2233455555556666666666666666655543
No 428
>PRK13342 recombination factor protein RarA; Reviewed
Probab=20.05 E-value=1.1e+03 Score=25.27 Aligned_cols=37 Identities=22% Similarity=0.091 Sum_probs=24.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003946 643 KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679 (784)
Q Consensus 643 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 679 (784)
..+.+.|+..+.+|.+.|..|....-..++.++...|
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4677778888888887777776555555555554444
Done!