Query 003946
Match_columns 784
No_of_seqs 540 out of 3319
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 09:09:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.7E-37 9.1E-42 351.5 44.8 499 88-747 82-590 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.8E-37 1.3E-41 350.2 38.8 473 87-716 114-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.5E-29 1.2E-33 272.3 25.1 205 469-717 8-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 3.7E-29 1.3E-33 272.1 25.2 188 452-678 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 3.5E-23 1.2E-27 221.3 50.4 365 260-740 6-372 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4.5E-23 1.5E-27 220.4 46.1 375 221-720 12-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 3.9E-20 1.3E-24 201.9 40.7 317 286-713 24-371 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.2E-19 4.2E-24 201.5 39.9 431 253-747 6-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.1E-19 7.3E-24 196.0 40.6 331 250-672 23-370 (450)
10 2gw1_A Mitochondrial precursor 99.9 4.7E-19 1.6E-23 196.8 43.5 443 90-658 6-477 (514)
11 3fp2_A TPR repeat-containing p 99.8 3.6E-17 1.2E-21 182.7 40.8 414 253-734 25-491 (537)
12 3fp2_A TPR repeat-containing p 99.8 8.6E-17 2.9E-21 179.6 40.9 442 89-659 24-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 4.6E-16 1.6E-20 163.5 41.2 234 451-694 71-334 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 1.6E-15 5.6E-20 159.3 43.6 333 252-676 2-351 (359)
15 3hym_B Cell division cycle pro 99.7 2.8E-15 9.6E-20 155.5 34.6 287 285-675 19-314 (330)
16 3hym_B Cell division cycle pro 99.7 2.9E-15 1E-19 155.4 33.6 296 248-647 17-322 (330)
17 3spa_A Mtrpol, DNA-directed RN 99.7 2.1E-18 7.3E-23 191.5 7.8 151 451-608 127-286 (1134)
18 3spa_A Mtrpol, DNA-directed RN 99.7 3.9E-18 1.3E-22 189.5 9.5 171 485-656 124-307 (1134)
19 1fch_A Peroxisomal targeting s 99.7 1.8E-15 6.2E-20 159.8 28.0 304 265-691 37-355 (368)
20 1xi4_A Clathrin heavy chain; a 99.7 2.5E-12 8.5E-17 147.9 54.5 477 76-746 971-1470(1630)
21 1xi4_A Clathrin heavy chain; a 99.7 8.8E-13 3E-17 151.6 50.6 412 136-726 948-1376(1630)
22 1fch_A Peroxisomal targeting s 99.7 3.8E-15 1.3E-19 157.3 29.0 275 222-587 39-314 (368)
23 2xm6_A Protein corresponding t 99.7 1.6E-12 5.5E-17 142.9 50.1 354 251-736 37-434 (490)
24 4eqf_A PEX5-related protein; a 99.7 4.7E-15 1.6E-19 156.5 27.2 268 450-730 64-352 (365)
25 4eqf_A PEX5-related protein; a 99.7 4.7E-15 1.6E-19 156.5 26.7 98 252-354 64-161 (365)
26 2ooe_A Cleavage stimulation fa 99.7 4.3E-13 1.5E-17 149.1 43.3 415 164-694 12-491 (530)
27 2xm6_A Protein corresponding t 99.7 1.5E-12 5E-17 143.2 46.1 319 252-695 74-432 (490)
28 1b89_A Protein (clathrin heavy 99.7 2.8E-15 9.6E-20 154.9 20.8 280 222-652 17-304 (449)
29 2ooe_A Cleavage stimulation fa 99.7 2E-12 6.9E-17 143.7 45.3 424 84-659 7-492 (530)
30 1b89_A Protein (clathrin heavy 99.7 9.5E-15 3.2E-19 151.0 23.8 280 142-580 17-304 (449)
31 3cv0_A Peroxisome targeting si 99.7 4.5E-14 1.5E-18 146.2 29.2 270 451-732 21-313 (327)
32 3cv0_A Peroxisome targeting si 99.7 4.7E-14 1.6E-18 146.0 28.6 153 498-654 148-310 (327)
33 3mkr_A Coatomer subunit epsilo 99.6 1E-13 3.6E-18 140.4 26.7 260 459-745 7-273 (291)
34 4g1t_A Interferon-induced prot 99.6 2.7E-12 9.4E-17 140.4 36.8 364 286-743 49-469 (472)
35 3mkr_A Coatomer subunit epsilo 99.6 8.4E-13 2.9E-17 133.7 26.9 251 262-624 8-265 (291)
36 4g1t_A Interferon-induced prot 99.5 9.9E-12 3.4E-16 136.0 35.5 366 250-695 48-459 (472)
37 3uq3_A Heat shock protein STI1 99.5 1.2E-11 4.1E-16 122.8 27.4 224 452-694 6-235 (258)
38 3uq3_A Heat shock protein STI1 99.5 1.6E-11 5.6E-16 121.8 27.7 239 488-747 5-253 (258)
39 2pl2_A Hypothetical conserved 99.5 9E-12 3.1E-16 120.2 23.2 199 521-732 3-212 (217)
40 2ho1_A Type 4 fimbrial biogene 99.5 3.4E-11 1.2E-15 119.3 27.9 201 451-659 37-238 (252)
41 2pl2_A Hypothetical conserved 99.4 1.8E-11 6E-16 118.2 23.9 200 285-585 2-212 (217)
42 2ho1_A Type 4 fimbrial biogene 99.4 5.4E-11 1.8E-15 117.8 27.9 200 489-733 38-237 (252)
43 2vq2_A PILW, putative fimbrial 99.4 7.2E-11 2.5E-15 114.3 27.6 202 450-658 7-210 (225)
44 2vq2_A PILW, putative fimbrial 99.4 1.1E-10 3.7E-15 113.0 27.9 211 489-745 9-220 (225)
45 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.7E-11 5.8E-16 123.2 22.2 85 266-354 18-105 (275)
46 2q7f_A YRRB protein; TPR, prot 99.4 5E-11 1.7E-15 117.1 23.4 98 252-354 22-119 (243)
47 2q7f_A YRRB protein; TPR, prot 99.4 5.6E-11 1.9E-15 116.8 23.3 203 448-659 20-222 (243)
48 3sf4_A G-protein-signaling mod 99.4 3.8E-11 1.3E-15 128.2 23.5 283 447-733 5-335 (406)
49 3u4t_A TPR repeat-containing p 99.4 1.2E-10 4E-15 116.8 25.7 245 256-599 6-260 (272)
50 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.2E-11 1.1E-15 121.1 21.4 199 451-658 43-243 (275)
51 2h6f_A Protein farnesyltransfe 99.4 2.5E-10 8.5E-15 119.6 28.7 150 450-607 165-322 (382)
52 4a1s_A PINS, partner of inscut 99.4 1.9E-11 6.5E-16 131.0 20.8 279 452-734 49-372 (411)
53 2h6f_A Protein farnesyltransfe 99.4 2E-10 6.9E-15 120.2 27.8 249 253-605 97-364 (382)
54 3u4t_A TPR repeat-containing p 99.4 9.4E-11 3.2E-15 117.5 24.5 232 454-694 6-249 (272)
55 1ouv_A Conserved hypothetical 99.4 1.7E-09 5.8E-14 108.4 33.0 222 450-694 5-250 (273)
56 1ouv_A Conserved hypothetical 99.4 1.7E-09 5.7E-14 108.5 32.9 224 487-735 5-252 (273)
57 3e4b_A ALGK; tetratricopeptide 99.4 1E-10 3.5E-15 126.5 25.5 378 171-694 9-420 (452)
58 3ro2_A PINS homolog, G-protein 99.4 3.2E-11 1.1E-15 124.8 20.3 279 452-734 6-332 (338)
59 4a1s_A PINS, partner of inscut 99.3 7.8E-11 2.7E-15 126.2 23.8 212 290-586 50-291 (411)
60 3sf4_A G-protein-signaling mod 99.3 2.2E-10 7.4E-15 122.3 26.7 311 250-679 6-361 (406)
61 3ro2_A PINS homolog, G-protein 99.3 1.9E-10 6.5E-15 118.9 24.4 286 290-694 7-331 (338)
62 2ond_A Cleavage stimulation fa 99.3 5.6E-09 1.9E-13 106.7 31.2 203 448-658 47-269 (308)
63 3e4b_A ALGK; tetratricopeptide 99.2 5E-10 1.7E-14 121.1 23.0 343 259-736 9-389 (452)
64 2ond_A Cleavage stimulation fa 99.2 5.8E-09 2E-13 106.5 29.7 218 468-695 33-270 (308)
65 4e6h_A MRNA 3'-END-processing 99.2 1E-07 3.6E-12 106.5 41.1 466 78-679 54-588 (679)
66 4e6h_A MRNA 3'-END-processing 99.2 5.7E-08 1.9E-12 108.6 38.7 235 506-750 327-584 (679)
67 3nf1_A KLC 1, kinesin light ch 99.2 7.6E-11 2.6E-15 120.6 14.1 245 450-733 26-306 (311)
68 3vtx_A MAMA; tetratricopeptide 99.2 3.4E-09 1.1E-13 99.0 23.8 164 452-658 6-169 (184)
69 3vtx_A MAMA; tetratricopeptide 99.2 4.3E-09 1.5E-13 98.3 24.2 165 522-694 4-169 (184)
70 4abn_A Tetratricopeptide repea 99.2 8.9E-10 3E-14 119.9 21.2 214 467-691 84-317 (474)
71 3ulq_A Response regulator aspa 99.2 5.2E-09 1.8E-13 110.7 24.9 235 455-694 107-367 (383)
72 4abn_A Tetratricopeptide repea 99.1 2.1E-09 7E-14 117.0 21.2 216 268-584 83-318 (474)
73 3ulq_A Response regulator aspa 99.1 7.9E-09 2.7E-13 109.3 25.3 239 259-586 109-367 (383)
74 1hz4_A MALT regulatory protein 99.1 3.2E-08 1.1E-12 104.1 29.4 277 454-733 17-321 (373)
75 3nf1_A KLC 1, kinesin light ch 99.1 3.4E-10 1.2E-14 115.8 13.6 217 450-694 68-306 (311)
76 3q15_A PSP28, response regulat 99.1 5E-08 1.7E-12 102.9 29.4 134 452-587 142-290 (378)
77 3q15_A PSP28, response regulat 99.1 8E-08 2.7E-12 101.3 29.1 240 293-620 106-362 (378)
78 3as5_A MAMA; tetratricopeptide 99.1 2.2E-08 7.5E-13 93.1 21.7 163 452-621 9-171 (186)
79 3as5_A MAMA; tetratricopeptide 99.0 3.8E-08 1.3E-12 91.5 22.4 164 254-516 9-172 (186)
80 1hz4_A MALT regulatory protein 99.0 4.7E-07 1.6E-11 95.1 32.1 278 259-621 20-320 (373)
81 3edt_B KLC 2, kinesin light ch 99.0 8.1E-09 2.8E-13 103.6 16.4 214 488-733 43-280 (283)
82 4i17_A Hypothetical protein; T 99.0 1.1E-07 3.9E-12 92.0 22.9 134 486-622 5-145 (228)
83 4gyw_A UDP-N-acetylglucosamine 98.9 5E-08 1.7E-12 110.4 22.4 166 450-622 8-173 (723)
84 4gyw_A UDP-N-acetylglucosamine 98.9 4.3E-08 1.5E-12 111.0 21.7 163 523-693 9-172 (723)
85 4i17_A Hypothetical protein; T 98.9 1.4E-07 4.7E-12 91.4 22.6 202 448-666 4-214 (228)
86 1qqe_A Vesicular transport pro 98.9 6E-08 2.1E-12 98.1 19.6 241 469-733 3-268 (292)
87 3edt_B KLC 2, kinesin light ch 98.9 3.9E-08 1.3E-12 98.5 17.0 238 265-587 13-281 (283)
88 2fo7_A Synthetic consensus TPR 98.8 4.2E-07 1.4E-11 79.1 18.4 128 526-658 4-131 (136)
89 2fo7_A Synthetic consensus TPR 98.8 5E-07 1.7E-11 78.6 18.9 130 453-587 3-132 (136)
90 3mv2_B Coatomer subunit epsilo 98.8 1.2E-06 4.1E-11 86.8 23.1 256 459-744 21-290 (310)
91 1qqe_A Vesicular transport pro 98.7 9E-07 3.1E-11 89.3 19.5 194 498-694 47-268 (292)
92 2ifu_A Gamma-SNAP; membrane fu 98.6 7.8E-07 2.7E-11 90.5 17.9 233 464-727 4-254 (307)
93 3qky_A Outer membrane assembly 98.6 2.3E-06 8E-11 84.6 20.4 183 487-694 14-223 (261)
94 3urz_A Uncharacterized protein 98.6 2E-06 6.7E-11 81.8 18.7 130 529-666 60-191 (208)
95 3qky_A Outer membrane assembly 98.6 4.5E-06 1.5E-10 82.6 22.1 188 448-659 12-224 (261)
96 3qou_A Protein YBBN; thioredox 98.6 1.4E-06 4.9E-11 87.5 18.5 167 486-657 115-282 (287)
97 3mv2_B Coatomer subunit epsilo 98.6 5.1E-06 1.7E-10 82.3 20.9 170 448-624 97-283 (310)
98 3urz_A Uncharacterized protein 98.6 3.3E-06 1.1E-10 80.3 19.2 75 564-642 60-134 (208)
99 2uy1_A Cleavage stimulation fa 98.6 0.00015 5.1E-09 78.5 34.1 47 468-517 196-242 (493)
100 2yhc_A BAMD, UPF0169 lipoprote 98.5 5.8E-06 2E-10 79.7 20.2 204 450-695 3-213 (225)
101 3u3w_A Transcriptional activat 98.5 2E-05 6.9E-10 79.4 25.1 168 565-733 82-265 (293)
102 2r5s_A Uncharacterized protein 98.5 1.1E-06 3.7E-11 81.0 14.3 159 494-657 12-171 (176)
103 3dra_A Protein farnesyltransfe 98.5 5.4E-05 1.9E-09 75.7 27.5 200 452-658 68-286 (306)
104 2pzi_A Probable serine/threoni 98.5 1.3E-06 4.4E-11 99.5 17.4 173 462-645 402-583 (681)
105 3dra_A Protein farnesyltransfe 98.5 5.8E-05 2E-09 75.5 26.9 234 459-733 40-286 (306)
106 2uy1_A Cleavage stimulation fa 98.5 0.00021 7.3E-09 77.3 33.1 357 267-733 28-412 (493)
107 2r5s_A Uncharacterized protein 98.5 3.4E-06 1.1E-10 77.7 15.6 61 488-548 108-169 (176)
108 2pzi_A Probable serine/threoni 98.5 5.9E-06 2E-10 94.0 20.8 152 450-609 432-583 (681)
109 3rjv_A Putative SEL1 repeat pr 98.5 1E-05 3.6E-10 77.0 19.4 177 469-660 4-198 (212)
110 3qou_A Protein YBBN; thioredox 98.5 6.7E-06 2.3E-10 82.6 18.5 166 286-550 115-282 (287)
111 2yhc_A BAMD, UPF0169 lipoprote 98.5 1.5E-05 5E-10 76.8 20.3 170 451-659 41-213 (225)
112 2vsy_A XCC0866; transferase, g 98.5 7.1E-06 2.4E-10 91.5 20.6 155 464-625 2-159 (568)
113 3rjv_A Putative SEL1 repeat pr 98.4 2.4E-05 8.2E-10 74.4 20.8 163 558-736 18-199 (212)
114 2ifu_A Gamma-SNAP; membrane fu 98.4 1.5E-05 5.1E-10 80.9 20.2 199 266-550 4-222 (307)
115 4ga2_A E3 SUMO-protein ligase 98.4 1.5E-06 5.1E-11 77.7 11.1 141 461-608 7-148 (150)
116 2vsy_A XCC0866; transferase, g 98.4 9.7E-06 3.3E-10 90.4 19.3 154 501-660 2-158 (568)
117 4ga2_A E3 SUMO-protein ligase 98.4 2.8E-06 9.7E-11 75.8 11.7 56 293-352 36-91 (150)
118 2qfc_A PLCR protein; TPR, HTH, 98.4 5.5E-05 1.9E-09 76.1 22.7 130 602-732 123-264 (293)
119 2qfc_A PLCR protein; TPR, HTH, 98.3 3E-05 1E-09 78.1 20.5 170 525-695 77-266 (293)
120 1a17_A Serine/threonine protei 98.3 2.1E-05 7.1E-10 71.2 16.4 58 528-586 18-75 (166)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.3 3.1E-05 1.1E-09 73.6 18.0 125 529-659 12-150 (213)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.3 3.8E-05 1.3E-09 72.9 18.0 127 493-624 11-151 (213)
123 3q7a_A Farnesyltransferase alp 98.3 0.00038 1.3E-08 70.4 25.8 152 450-608 87-256 (349)
124 3q7a_A Farnesyltransferase alp 98.2 0.00086 2.9E-08 67.8 27.5 148 454-608 57-215 (349)
125 1na0_A Designed protein CTPR3; 98.2 7.3E-05 2.5E-09 63.4 17.0 98 451-552 9-106 (125)
126 1na0_A Designed protein CTPR3; 98.2 8.7E-05 3E-09 62.9 17.4 117 488-608 9-125 (125)
127 1a17_A Serine/threonine protei 98.2 7.9E-05 2.7E-09 67.2 18.0 129 452-585 14-144 (166)
128 3gw4_A Uncharacterized protein 98.2 2.5E-05 8.4E-10 73.5 14.3 103 630-733 66-175 (203)
129 3u3w_A Transcriptional activat 98.1 0.00011 3.7E-09 74.0 19.2 129 456-585 80-223 (293)
130 3gw4_A Uncharacterized protein 98.1 4.7E-05 1.6E-09 71.5 14.7 122 462-586 3-135 (203)
131 2vyi_A SGTA protein; chaperone 98.1 0.00014 4.9E-09 62.2 16.6 120 450-574 11-130 (131)
132 4gco_A Protein STI-1; structur 98.1 0.00013 4.4E-09 62.6 16.0 97 452-552 14-110 (126)
133 2c2l_A CHIP, carboxy terminus 98.1 3.4E-05 1.2E-09 77.1 13.6 194 522-733 3-198 (281)
134 3dss_A Geranylgeranyl transfer 98.1 0.002 7E-08 64.7 26.4 222 460-694 38-303 (331)
135 4gco_A Protein STI-1; structur 98.1 0.00014 4.9E-09 62.3 15.7 25 560-584 49-73 (126)
136 4f3v_A ESX-1 secretion system 98.1 5.7E-05 2E-09 73.7 14.4 192 463-666 18-242 (282)
137 2vgx_A Chaperone SYCD; alterna 98.0 3.1E-05 1.1E-09 68.7 11.5 95 525-622 23-117 (148)
138 3gyz_A Chaperone protein IPGC; 98.0 6.6E-05 2.3E-09 66.6 13.3 94 561-658 39-132 (151)
139 2vyi_A SGTA protein; chaperone 98.0 0.00015 5.2E-09 62.0 15.5 117 488-608 12-128 (131)
140 2e2e_A Formate-dependent nitri 98.0 9.9E-05 3.4E-09 67.7 14.9 122 462-588 21-145 (177)
141 4f3v_A ESX-1 secretion system 98.0 0.00031 1E-08 68.6 18.7 198 535-746 18-247 (282)
142 2lni_A Stress-induced-phosphop 98.0 0.00013 4.3E-09 62.9 14.6 23 527-549 20-42 (133)
143 2c2l_A CHIP, carboxy terminus 98.0 4.2E-05 1.4E-09 76.4 12.9 191 491-694 7-198 (281)
144 1p5q_A FKBP52, FK506-binding p 98.0 0.00013 4.4E-09 75.0 16.9 87 559-649 197-283 (336)
145 3gyz_A Chaperone protein IPGC; 98.0 0.00011 3.9E-09 65.1 14.3 99 450-552 35-133 (151)
146 2lni_A Stress-induced-phosphop 98.0 0.00015 5.2E-09 62.4 14.9 118 449-571 14-131 (133)
147 2e2e_A Formate-dependent nitri 98.0 0.00015 5.2E-09 66.4 15.5 127 499-629 21-150 (177)
148 1p5q_A FKBP52, FK506-binding p 98.0 0.00022 7.4E-09 73.2 17.4 138 450-613 146-283 (336)
149 4gcn_A Protein STI-1; structur 97.9 0.00017 5.8E-09 61.9 13.5 102 563-668 13-119 (127)
150 3sz7_A HSC70 cochaperone (SGT) 97.9 0.0002 6.9E-09 64.6 14.7 94 526-622 14-107 (164)
151 2vgx_A Chaperone SYCD; alterna 97.9 4E-05 1.4E-09 68.0 9.6 96 559-658 22-117 (148)
152 3upv_A Heat shock protein STI1 97.9 0.00037 1.3E-08 59.5 15.0 91 564-658 10-100 (126)
153 2fbn_A 70 kDa peptidylprolyl i 97.9 4.6E-05 1.6E-09 71.5 9.5 132 596-734 40-186 (198)
154 1elw_A TPR1-domain of HOP; HOP 97.9 0.00079 2.7E-08 56.1 16.4 90 494-585 10-99 (118)
155 2xcb_A PCRH, regulatory protei 97.9 0.00027 9.3E-09 62.0 13.9 90 529-621 24-113 (142)
156 3q49_B STIP1 homology and U bo 97.8 0.00048 1.6E-08 59.7 15.3 98 594-695 9-106 (137)
157 4b4t_Q 26S proteasome regulato 97.8 0.00041 1.4E-08 74.1 18.0 102 630-732 135-243 (434)
158 1elw_A TPR1-domain of HOP; HOP 97.8 0.00084 2.9E-08 55.9 16.4 99 451-553 4-102 (118)
159 3upv_A Heat shock protein STI1 97.8 0.0007 2.4E-08 57.7 16.0 97 452-552 5-101 (126)
160 2fbn_A 70 kDa peptidylprolyl i 97.8 5.8E-05 2E-09 70.8 9.5 95 491-586 41-150 (198)
161 3dss_A Geranylgeranyl transfer 97.8 0.033 1.1E-06 55.9 29.6 117 449-570 106-239 (331)
162 4b4t_Q 26S proteasome regulato 97.8 0.01 3.5E-07 63.1 28.0 205 261-551 12-244 (434)
163 1elr_A TPR2A-domain of HOP; HO 97.8 0.00039 1.3E-08 59.4 13.5 109 452-565 5-119 (131)
164 4gcn_A Protein STI-1; structur 97.8 0.00073 2.5E-08 57.8 14.8 105 452-561 9-119 (127)
165 1elr_A TPR2A-domain of HOP; HO 97.8 0.00063 2.1E-08 58.0 14.4 104 563-670 9-117 (131)
166 2kck_A TPR repeat; tetratricop 97.7 0.00029 1E-08 58.2 11.5 55 495-550 13-67 (112)
167 3q49_B STIP1 homology and U bo 97.7 0.0011 3.9E-08 57.2 15.2 100 448-551 6-105 (137)
168 3ro3_A PINS homolog, G-protein 97.7 0.00034 1.2E-08 62.4 12.1 136 597-733 12-157 (164)
169 2dba_A Smooth muscle cell asso 97.7 0.0013 4.6E-08 57.5 15.8 97 487-586 27-127 (148)
170 2xcb_A PCRH, regulatory protei 97.7 0.00074 2.5E-08 59.1 13.8 99 450-552 17-115 (142)
171 1hxi_A PEX5, peroxisome target 97.6 0.00032 1.1E-08 59.5 10.7 98 254-356 18-115 (121)
172 2kck_A TPR repeat; tetratricop 97.6 0.00046 1.6E-08 57.0 11.4 100 450-553 5-107 (112)
173 2dba_A Smooth muscle cell asso 97.6 0.0017 5.9E-08 56.8 15.8 100 448-552 25-128 (148)
174 3sz7_A HSC70 cochaperone (SGT) 97.6 0.0011 3.6E-08 59.8 14.2 99 450-552 10-108 (164)
175 3k9i_A BH0479 protein; putativ 97.6 9.6E-05 3.3E-09 62.3 6.7 59 561-621 30-88 (117)
176 3ro3_A PINS homolog, G-protein 97.6 0.0034 1.2E-07 55.6 17.2 67 289-355 10-78 (164)
177 1hxi_A PEX5, peroxisome target 97.6 0.00085 2.9E-08 56.8 12.2 15 535-549 29-43 (121)
178 1wao_1 Serine/threonine protei 97.5 0.00065 2.2E-08 73.3 12.7 89 532-623 15-103 (477)
179 1wao_1 Serine/threonine protei 97.4 0.00049 1.7E-08 74.3 11.0 120 495-618 13-134 (477)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0018 6.2E-08 69.5 15.3 88 559-650 318-405 (457)
181 2xev_A YBGF; tetratricopeptide 97.4 0.0025 8.6E-08 54.2 13.5 54 497-551 11-67 (129)
182 2xev_A YBGF; tetratricopeptide 97.4 0.0064 2.2E-07 51.6 15.5 94 455-552 6-105 (129)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.3 0.0032 1.1E-07 67.5 15.8 139 450-614 267-405 (457)
184 3rkv_A Putative peptidylprolyl 97.3 0.0038 1.3E-07 55.9 13.5 62 595-658 64-125 (162)
185 3k9i_A BH0479 protein; putativ 97.2 0.00074 2.5E-08 56.7 7.8 88 265-356 2-91 (117)
186 1ihg_A Cyclophilin 40; ppiase 97.2 0.0031 1.1E-07 65.3 13.9 87 559-649 274-360 (370)
187 3rkv_A Putative peptidylprolyl 97.2 0.0064 2.2E-07 54.3 14.0 101 451-552 11-126 (162)
188 1ihg_A Cyclophilin 40; ppiase 97.2 0.0047 1.6E-07 64.0 14.4 138 451-613 223-360 (370)
189 2hr2_A Hypothetical protein; a 97.1 0.0076 2.6E-07 52.9 13.0 92 527-620 15-128 (159)
190 1dce_A Protein (RAB geranylger 97.1 0.041 1.4E-06 60.4 22.1 177 462-647 39-243 (567)
191 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0015 5.3E-08 66.9 9.7 61 560-622 232-292 (338)
192 3n71_A Histone lysine methyltr 97.0 0.0036 1.2E-07 67.1 12.0 102 630-733 351-463 (490)
193 2kat_A Uncharacterized protein 97.0 0.0033 1.1E-07 52.3 9.4 23 526-548 22-44 (115)
194 1dce_A Protein (RAB geranylger 97.0 0.048 1.6E-06 59.9 20.8 155 450-611 62-243 (567)
195 3n71_A Histone lysine methyltr 96.9 0.016 5.6E-07 62.0 16.3 93 263-355 319-422 (490)
196 2hr2_A Hypothetical protein; a 96.9 0.014 4.9E-07 51.1 12.5 75 632-707 59-144 (159)
197 1klx_A Cysteine rich protein B 96.8 0.032 1.1E-06 48.2 14.6 111 465-588 9-127 (138)
198 2if4_A ATFKBP42; FKBP-like, al 96.8 0.0031 1.1E-07 64.5 9.4 148 450-621 178-326 (338)
199 1klx_A Cysteine rich protein B 96.8 0.013 4.4E-07 50.7 11.9 109 539-660 11-127 (138)
200 2kat_A Uncharacterized protein 96.7 0.018 6.2E-07 47.7 11.8 82 270-356 2-83 (115)
201 2l6j_A TPR repeat-containing p 96.7 0.0014 4.9E-08 54.0 4.8 24 634-657 42-65 (111)
202 1na3_A Designed protein CTPR2; 96.7 0.021 7.3E-07 44.5 11.3 60 526-586 12-71 (91)
203 1na3_A Designed protein CTPR2; 96.6 0.033 1.1E-06 43.4 11.9 81 451-535 9-89 (91)
204 3ma5_A Tetratricopeptide repea 96.6 0.0082 2.8E-07 48.5 8.3 26 525-550 9-34 (100)
205 2l6j_A TPR repeat-containing p 96.5 0.012 4E-07 48.3 9.2 63 452-517 5-67 (111)
206 3ly7_A Transcriptional activat 96.5 0.033 1.1E-06 56.2 13.7 63 629-694 276-338 (372)
207 1zu2_A Mitochondrial import re 96.4 0.0092 3.2E-07 52.2 8.0 58 611-672 63-131 (158)
208 1wy6_A Hypothetical protein ST 96.4 0.22 7.5E-06 41.3 15.1 139 570-737 19-157 (172)
209 1zu2_A Mitochondrial import re 96.2 0.023 7.7E-07 49.8 9.4 59 574-637 62-131 (158)
210 3ma5_A Tetratricopeptide repea 96.2 0.053 1.8E-06 43.5 11.3 65 287-355 6-70 (100)
211 3qww_A SET and MYND domain-con 95.9 0.05 1.7E-06 57.2 12.1 92 265-356 310-412 (433)
212 3ly7_A Transcriptional activat 95.7 0.14 4.8E-06 51.6 13.7 74 591-669 274-347 (372)
213 3qwp_A SET and MYND domain-con 95.6 0.093 3.2E-06 55.2 12.6 96 637-733 294-399 (429)
214 3qwp_A SET and MYND domain-con 95.5 0.093 3.2E-06 55.2 12.5 98 259-356 293-401 (429)
215 3qww_A SET and MYND domain-con 95.5 0.076 2.6E-06 55.8 11.7 90 643-733 311-410 (433)
216 1wy6_A Hypothetical protein ST 95.4 0.98 3.3E-05 37.5 14.9 66 452-520 92-157 (172)
217 3mkq_A Coatomer beta'-subunit; 95.3 0.93 3.2E-05 52.3 21.2 49 595-653 682-730 (814)
218 3mkq_A Coatomer beta'-subunit; 94.6 0.21 7.1E-06 57.8 13.3 154 460-656 608-762 (814)
219 3mkq_B Coatomer subunit alpha; 94.5 2.1 7.3E-05 37.9 16.2 23 633-655 92-114 (177)
220 2kc7_A BFR218_protein; tetratr 94.5 0.25 8.6E-06 39.0 9.8 55 532-587 9-64 (99)
221 3mkq_B Coatomer subunit alpha; 94.3 2.7 9.1E-05 37.2 16.6 128 568-732 15-142 (177)
222 2kc7_A BFR218_protein; tetratr 94.2 0.36 1.2E-05 38.0 10.1 55 460-517 9-64 (99)
223 3bee_A Putative YFRE protein; 94.1 0.87 3E-05 35.7 11.7 46 575-622 26-71 (93)
224 1pc2_A Mitochondria fission pr 93.4 0.59 2E-05 40.3 10.2 81 468-552 15-100 (152)
225 2v5f_A Prolyl 4-hydroxylase su 92.5 0.77 2.6E-05 36.9 9.4 77 664-743 4-82 (104)
226 1pc2_A Mitochondria fission pr 92.3 0.93 3.2E-05 39.1 9.9 46 505-551 15-63 (152)
227 3bee_A Putative YFRE protein; 92.1 2.9 9.8E-05 32.6 11.9 66 522-588 5-73 (93)
228 3u64_A Protein TP_0956; tetrat 91.6 10 0.00035 36.6 18.4 83 575-662 180-272 (301)
229 2v5f_A Prolyl 4-hydroxylase su 90.3 2.9 0.0001 33.3 10.7 61 491-551 8-74 (104)
230 3u64_A Protein TP_0956; tetrat 89.6 1.8 6.3E-05 41.7 10.0 92 646-746 179-283 (301)
231 1nzn_A CGI-135 protein, fissio 89.3 2.8 9.5E-05 34.7 9.6 18 604-621 84-101 (126)
232 4h7y_A Dual specificity protei 87.3 13 0.00045 31.7 12.9 108 449-588 11-124 (161)
233 1nzn_A CGI-135 protein, fissio 87.0 2.9 0.0001 34.6 8.3 82 468-552 18-103 (126)
234 1v54_E Cytochrome C oxidase po 86.6 6.9 0.00023 30.6 9.4 63 268-334 25-87 (109)
235 4b4t_P 26S proteasome regulato 85.5 22 0.00077 37.1 16.6 194 537-733 30-246 (445)
236 4gns_B Protein CSD3, chitin bi 85.2 19 0.00066 40.2 16.3 57 456-515 342-398 (754)
237 2ff4_A Probable regulatory pro 84.5 4.5 0.00016 41.6 10.5 71 453-526 173-248 (388)
238 3lvg_A Clathrin heavy chain 1; 84.5 0.0013 4.3E-08 67.5 -15.6 121 450-579 198-325 (624)
239 4b4t_P 26S proteasome regulato 82.9 48 0.0017 34.5 21.0 100 256-355 140-247 (445)
240 3lvg_A Clathrin heavy chain 1; 81.7 0.064 2.2E-06 55.3 -4.6 81 250-339 196-276 (624)
241 4h7y_A Dual specificity protei 81.3 9.2 0.00032 32.6 8.9 112 84-199 7-128 (161)
242 2ff4_A Probable regulatory pro 81.2 6.2 0.00021 40.6 9.9 72 635-708 176-248 (388)
243 2y69_E Cytochrome C oxidase su 80.2 15 0.0005 30.5 9.4 63 268-334 68-130 (152)
244 4ady_A RPN2, 26S proteasome re 79.9 91 0.0031 35.7 41.1 275 460-754 383-677 (963)
245 2wpv_A GET4, UPF0363 protein Y 79.7 48 0.0016 32.4 15.2 119 594-728 33-157 (312)
246 3lpz_A GET4 (YOR164C homolog); 77.6 58 0.002 32.2 17.0 158 574-752 12-179 (336)
247 1v54_E Cytochrome C oxidase po 77.3 9.9 0.00034 29.7 7.2 49 645-694 25-73 (109)
248 4fhn_B Nucleoporin NUP120; pro 76.6 44 0.0015 39.9 16.7 53 167-232 814-866 (1139)
249 3o48_A Mitochondria fission 1 76.1 12 0.00041 31.1 8.0 79 120-202 35-113 (134)
250 4gns_B Protein CSD3, chitin bi 75.6 38 0.0013 37.8 14.6 52 701-754 609-660 (754)
251 4ady_A RPN2, 26S proteasome re 74.3 1.3E+02 0.0044 34.5 35.4 237 468-720 471-721 (963)
252 4fhn_B Nucleoporin NUP120; pro 74.2 79 0.0027 37.7 18.1 84 631-721 900-987 (1139)
253 1y8m_A FIS1; mitochondria, unk 71.5 27 0.00093 29.4 9.2 77 122-202 36-112 (144)
254 2y69_E Cytochrome C oxidase su 68.3 35 0.0012 28.3 8.8 48 646-694 69-116 (152)
255 1y8m_A FIS1; mitochondria, unk 67.6 55 0.0019 27.6 13.4 90 662-758 36-132 (144)
256 1zbp_A Hypothetical protein VP 66.0 92 0.0031 29.5 13.2 114 568-694 7-128 (273)
257 3o48_A Mitochondria fission 1 64.1 60 0.0021 26.9 9.7 81 660-747 35-118 (134)
258 1zbp_A Hypothetical protein VP 63.6 51 0.0018 31.2 10.4 116 459-587 5-129 (273)
259 3eiq_C Programmed cell death p 60.8 1.4E+02 0.0047 29.8 16.3 68 452-522 218-287 (358)
260 4b4t_R RPN7, 26S proteasome re 56.7 64 0.0022 33.4 11.2 100 632-733 133-236 (429)
261 2p58_C Putative type III secre 54.9 51 0.0018 25.7 7.1 78 466-553 22-99 (116)
262 2nsz_A Programmed cell death p 52.7 27 0.00091 29.1 6.0 73 292-368 11-85 (129)
263 4b4t_R RPN7, 26S proteasome re 52.4 1E+02 0.0036 31.8 11.9 98 453-552 133-237 (429)
264 3ffl_A Anaphase-promoting comp 49.9 81 0.0028 27.4 8.6 29 706-734 123-151 (167)
265 2uwj_G Type III export protein 49.8 50 0.0017 25.7 6.3 78 466-553 21-98 (115)
266 3esl_A Checkpoint serine/threo 49.0 1.4E+02 0.0047 26.9 10.2 71 301-373 92-162 (202)
267 2zu6_B Programmed cell death p 46.9 2.1E+02 0.0072 27.8 17.6 67 452-521 167-235 (307)
268 3ffl_A Anaphase-promoting comp 44.9 89 0.003 27.1 8.0 56 494-549 26-89 (167)
269 2ion_A PDCD4, programmed cell 43.7 26 0.00088 30.1 4.6 24 256-279 12-35 (152)
270 2qx5_A Nucleoporin NIC96; mRNA 38.8 4.2E+02 0.014 28.9 18.2 347 258-692 157-564 (661)
271 3txn_A 26S proteasome regulato 35.5 3.6E+02 0.012 27.2 27.8 224 493-736 104-345 (394)
272 2nsz_A Programmed cell death p 34.7 1.9E+02 0.0065 23.7 9.5 66 453-521 9-76 (129)
273 2uwj_G Type III export protein 33.9 1.7E+02 0.0057 22.9 7.3 85 645-743 21-105 (115)
274 2ion_A PDCD4, programmed cell 32.8 1.8E+02 0.0061 24.8 8.2 66 453-521 11-78 (152)
275 3esl_A Checkpoint serine/threo 32.8 2.7E+02 0.0093 25.0 10.2 71 521-591 75-148 (202)
276 4a1g_A Mitotic checkpoint seri 30.5 2.5E+02 0.0086 23.9 8.9 66 305-372 82-147 (152)
277 2d2s_A Exocyst complex compone 30.5 1.9E+02 0.0066 26.7 8.7 92 456-550 23-118 (235)
278 2p58_C Putative type III secre 30.4 2E+02 0.0067 22.5 8.1 79 502-588 21-99 (116)
279 3eiq_C Programmed cell death p 29.5 4.3E+02 0.015 26.2 15.6 99 255-357 219-323 (358)
280 2d2s_A Exocyst complex compone 29.4 2.3E+02 0.0078 26.3 8.9 93 258-356 23-121 (235)
281 2wvi_A Mitotic checkpoint seri 27.1 1.9E+02 0.0066 25.0 7.3 51 507-557 79-130 (164)
282 2ld7_B Paired amphipathic heli 27.0 73 0.0025 23.4 4.0 61 722-784 9-73 (75)
283 4fke_A Aminopeptidase N; zinc 26.2 7.8E+02 0.027 28.1 17.0 94 255-354 760-859 (909)
284 4a1g_A Mitotic checkpoint seri 25.8 1.8E+02 0.0062 24.7 6.8 51 541-591 83-134 (152)
285 1k1a_A B-cell lymphoma 3-encod 25.5 37 0.0013 31.4 2.9 86 259-349 12-99 (241)
286 3bqo_A Telomeric repeat-bindin 25.0 2.1E+02 0.007 25.6 7.0 51 304-355 94-146 (211)
287 2wvi_A Mitotic checkpoint seri 23.7 2.1E+02 0.0072 24.7 7.0 68 521-591 61-129 (164)
288 3hra_A Ankyrin repeat family p 23.3 1.4E+02 0.0049 26.1 6.5 16 100-115 12-27 (201)
289 1k1a_A B-cell lymphoma 3-encod 22.1 91 0.0031 28.5 5.0 18 262-279 85-102 (241)
290 2zu6_B Programmed cell death p 21.9 5.5E+02 0.019 24.8 15.8 99 255-357 168-272 (307)
291 2keb_A DNA polymerase subunit 21.6 2.8E+02 0.0097 21.4 6.8 57 685-747 28-89 (101)
292 1ug3_A EIF4GI, eukaryotic prot 21.2 1.4E+02 0.0048 29.6 6.3 23 257-279 15-37 (339)
293 3b7b_A Euchromatic histone-lys 20.5 88 0.003 28.6 4.5 86 260-354 148-235 (237)
294 4aez_C MAD3, mitotic spindle c 20.3 2.6E+02 0.0089 25.6 7.1 50 507-556 133-183 (223)
295 2r9g_A AAA ATPase, central reg 20.1 4.7E+02 0.016 23.4 9.6 92 529-622 17-116 (204)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-37 Score=351.47 Aligned_cols=499 Identities=10% Similarity=-0.014 Sum_probs=383.8
Q ss_pred CChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccch
Q 003946 88 RDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEP 167 (784)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (784)
+++..|+.+++.|.+.|++++|+.+|++|.... |+..++..+...|.+.|+.+ +|...+.++... ..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~----~~~~~~ 152 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYA---RAKCLLTKEDLY----NRSSAC 152 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHH---HHHHHHHHTCGG----GTCHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHH---HHHHHHHHHhcc----ccchhH
Confidence 455667777777777777777777777766432 55566666666666654433 345555544222 235556
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccccc
Q 003946 168 LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLI 247 (784)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~ 247 (784)
++.++.+|.+.|++++|.++|+++.. +.. . ..++.+. . ... .
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~---~-~~~~~~~------------------~--~~~---------~ 194 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNP-----FRK---D-EKNANKL------------------L--MQD---------G 194 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCT-----TC----------------------------------CCC---------S
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCC-----ccc---c-ccccccc------------------c--ccc---------c
Confidence 66666666666666666666664221 110 0 0000000 0 111 3
Q ss_pred CCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHH--HH-HHHHHhhcCCChh
Q 003946 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKAD-SNLLIIMAHIYERNGRREELR--KL-QRHIDEAVNLSDI 323 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~--~l-~~~~~~~~~~~~~ 323 (784)
+.+++..+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+...+..+.+. .+ +..+...+....
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 271 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL- 271 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH-
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH-
Confidence 456789999999999999999999999999999864 44 455555555444333322221 11 344433222222
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccc
Q 003946 324 QFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHI 403 (784)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (784)
..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 272 --~~~~~~~~~~~~~~g~~~~A~~~~~~~~~------------------------------------------------- 300 (597)
T 2xpi_A 272 --RSLYMLKLNKTSHEDELRRAEDYLSSING------------------------------------------------- 300 (597)
T ss_dssp --HHHHHTTSCTTTTHHHHHHHHHHHHTSTT-------------------------------------------------
T ss_pred --HHHHHHHHHHHcCcchHHHHHHHHHHhhc-------------------------------------------------
Confidence 22688889999999999999999987765
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003946 404 LSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQ 483 (784)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 483 (784)
..++..+|+.++.+|.+.|++++|.++|+++.+.+
T Consensus 301 -------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 335 (597)
T 2xpi_A 301 -------------------------------------------LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-- 335 (597)
T ss_dssp -------------------------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -------------------------------------------CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--
Confidence 24678899999999999999999999999999877
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 484 VSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563 (784)
Q Consensus 484 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 563 (784)
+.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. ..+..+|+.
T Consensus 336 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 412 (597)
T 2xpi_A 336 -PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIG 412 (597)
T ss_dssp -TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 5577789999999999999999999999999764 4579999999999999999999999999998764 346889999
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK 643 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 643 (784)
++.+|.+.|++++|+++|+++.+.+ |++..+|..++.+|.+.|++++|.++|+.+.+..+ .+..+|+.++..|.+.
T Consensus 413 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 413 FAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ--YDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHh
Confidence 9999999999999999999999865 66788999999999999999999999999998653 3678899999999999
Q ss_pred CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh
Q 003946 644 RLMQDAEKALKRMRSL----GHLPN--AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVR 717 (784)
Q Consensus 644 g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~ 717 (784)
|++++|.++|+++.+. +..|+ ..+|..+..+|.+.| ++++|...++++.+.. +.+..+|..+..+|.+
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK-MYDAAIDALNQGLLLS-----TNDANVHTAIALVYLH 562 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS-----SCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHH
Confidence 9999999999999886 67888 789999999999999 9999999999998731 3478999999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 718 GGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 718 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
.|++++|.+.++++.+. .|+......++
T Consensus 563 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~l 590 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAI--SPNEIMASDLL 590 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 99999999999999984 56655444444
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-37 Score=350.20 Aligned_cols=473 Identities=9% Similarity=-0.019 Sum_probs=379.9
Q ss_pred CCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccc
Q 003946 87 ARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKE 166 (784)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 166 (784)
.|+..+++.++.+|...|++++|+.+|+++... .++..+++.+...+.+.|+.+ +|..+++++. +...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-------~~~~ 181 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQ---GALNLLGETN-------PFRK 181 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHH---HHHHHHCSSC-------TTC-
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHH---HHHHHHhccC-------Cccc
Confidence 457789999999999999999999999998764 478889999999999876554 5666666421 1110
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccc
Q 003946 167 PLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPL 246 (784)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~ 246 (784)
....+.+.+. ...|..++..+|+.++.+|.+. |++++|.++|+ ++..
T Consensus 182 ----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~--~~~~-------- 228 (597)
T 2xpi_A 182 ----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNL--------SNFDRAKECYK--EALM-------- 228 (597)
T ss_dssp -------------C-----------CCSSCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHH--HHHH--------
T ss_pred ----cccccccccc-----------cccccchhHHHHHHHHHHHHHc--------CCHHHHHHHHH--HHHH--------
Confidence 0111111111 2335667899999999999997 89999999999 8742
Q ss_pred cCCCCc-hhhHHHHHHHhhhcCChhHHH--HH-HHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCh
Q 003946 247 IAMKPN-TNTFNIALAGCLLFETTRKAE--QL-LDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSD 322 (784)
Q Consensus 247 ~~~~p~-~~~~~~ll~~~~~~g~~~~A~--~l-~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~ 322 (784)
..|+ ...|..+...+...+..+.+. .+ +..+...+..++..+|+.++..|.+.|++++|.++|+++.+. +++.
T Consensus 229 --~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~ 305 (597)
T 2xpi_A 229 --VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSS 305 (597)
T ss_dssp --HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCH
T ss_pred --hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchH
Confidence 3444 445555555554443333222 12 555555555566677888899999999999999999998875 2333
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccc
Q 003946 323 IQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENH 402 (784)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (784)
. +|+.++.+|.+.|++++|.++|+++.+.+
T Consensus 306 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------------------------- 335 (597)
T 2xpi_A 306 D----LLLCKADTLFVRSRFIDVLAITTKILEID---------------------------------------------- 335 (597)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------------------
T ss_pred H----HHHHHHHHHHHhcCHHHHHHHHHHHHHcC----------------------------------------------
Confidence 3 69999999999999999999999998742
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 003946 403 ILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENL 482 (784)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 482 (784)
+.+..+|+.++.+|.+.|++++|..+|+++.+..
T Consensus 336 ---------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 336 ---------------------------------------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp ---------------------------------------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred ---------------------------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 2255678999999999999999999999999765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 483 QVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYE 562 (784)
Q Consensus 483 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 562 (784)
+.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..+|+
T Consensus 370 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 370 --PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp --TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred --cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 6788899999999999999999999999999864 3468899999999999999999999999998775 35889999
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---CCCCC--HHHHHHHH
Q 003946 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ---RIDCG--VHDWNNVI 637 (784)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~y~~li 637 (784)
.++.+|.+.|++++|+++|+++.+.. |.+..+|..++..|.+.|++++|.++|+.+.+.. +..|+ ..+|+.++
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 99999999999999999999999865 6778999999999999999999999999987752 24576 78999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH
Q 003946 638 HFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFV 716 (784)
Q Consensus 638 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~ 716 (784)
.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|...| ++++|...++++.+.. +-+...|..+..+|.
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~-----p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK-IPGLAITHLHESLAIS-----PNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-----TTCHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHh
Confidence 99999999999999999999864 347899999999999999 9999999999998832 225667777766553
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.5e-29 Score=272.29 Aligned_cols=205 Identities=16% Similarity=0.188 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------
Q 003946 469 ELTHFLIKAEKENLQVSHD-DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR--------- 538 (784)
Q Consensus 469 ~a~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--------- 538 (784)
.+..+.+++.+.+ +.+. ..+++.+|++|++.|++++|.++|++|.+.|++||..+||+||.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~--~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 8 PSENLSRKAKKKA--IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred hHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 3445556666555 2322 335777788888888888888888888888888888888888888876654
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 618 (784)
+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~---------------------------- 137 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ---------------------------- 137 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC----------------------------
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------------------
Confidence 5678888888888888888888888888888888888888888888777653
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 003946 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS 698 (784)
Q Consensus 619 ~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~ 698 (784)
||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.| ++++|.+++++|++
T Consensus 138 ---------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g-~~d~A~~ll~~Mr~---- 203 (501)
T 4g26_A 138 ---------PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTK-NADKVYKTLQRLRD---- 203 (501)
T ss_dssp ---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH----
T ss_pred ---------CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCC-CHHHHHHHHHHHHH----
Confidence 4455555555555555555555555555555555555555555555555555 55555555555555
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 003946 699 TSMNFDEELLDSVLYTFVR 717 (784)
Q Consensus 699 ~~~~p~~~~~~~li~~~~~ 717 (784)
.+..|+..||+.++..|+.
T Consensus 204 ~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 204 LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTSSBCHHHHHHHHHHHHS
T ss_pred hCCCcCHHHHHHHHHHHhc
Confidence 4555555555555555543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.7e-29 Score=272.05 Aligned_cols=188 Identities=14% Similarity=0.192 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcCCCCC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW---------LDQAHDLLDEMHLAGVRAS 522 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~~~ 522 (784)
..++.+|++|++.|++++|.++|++|.+.| +.||..|||+||.+|++.+. +++|.++|++|.+.|+.||
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 568899999999999999999999999999 89999999999999997664 7899999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~------------- 171 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV------------- 171 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998885
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAI 678 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 678 (784)
.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 172 ------------------------~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 172 ------------------------VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp ------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred ------------------------CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 3677888888888888888888888888888888888888888888887653
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.5e-23 Score=221.32 Aligned_cols=365 Identities=13% Similarity=0.017 Sum_probs=317.1
Q ss_pred HHHhhhcCChhHHHHHHHhhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHh
Q 003946 260 LAGCLLFETTRKAEQLLDIMPRIGVKAD-SNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLK 338 (784)
Q Consensus 260 l~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (784)
...+.+.|++++|++.++.+.+.. |+ ...+..+...+.+.|++++|...++...+..+.... +|..+...|.+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~----~~~~lg~~~~~ 79 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE----AYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH----HHHHHHHHHHH
Confidence 345678999999999999988753 54 456677778899999999999999998887655544 69999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHH
Q 003946 339 FGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVAL 418 (784)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (784)
.|++++|.+.|+++...
T Consensus 80 ~g~~~~A~~~~~~al~~--------------------------------------------------------------- 96 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRL--------------------------------------------------------------- 96 (388)
T ss_dssp HTCHHHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHc---------------------------------------------------------------
Confidence 99999999999998872
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 003946 419 EAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITL 497 (784)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 497 (784)
.| +..+|..+..++.+.|++++|...|.++.+.. +.+...+..+...
T Consensus 97 -----------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 97 -----------------------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PDLYCVRSDLGNL 144 (388)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---TTCTHHHHHHHHH
T ss_pred -----------------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHH
Confidence 34 45689999999999999999999999999876 4455667788888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 003946 498 CISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGA 577 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 577 (784)
+...|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999874 3368899999999999999999999999998874 23577899999999999999999
Q ss_pred HHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 578 LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 578 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
+..+++..... |.+..++..+...+.+.|++++|.+.|+.+.+..+. +..+|..+...|.+.|++++|.+.|+++.
T Consensus 223 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 223 VAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--FPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998765 778899999999999999999999999999986532 46679999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003946 658 SLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMF 737 (784)
Q Consensus 658 ~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 737 (784)
+. .+.+..+|..+...+...| ++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++.+. .
T Consensus 299 ~~-~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~ 369 (388)
T 1w3b_A 299 RL-CPTHADSLNNLANIKREQG-NIEEAVRLYRKALEV-----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--S 369 (388)
T ss_dssp HH-CTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHTTS-----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--C
T ss_pred hh-CcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--C
Confidence 86 3457889999999999999 999999999999862 2346889999999999999999999999999974 5
Q ss_pred CCH
Q 003946 738 IDK 740 (784)
Q Consensus 738 pd~ 740 (784)
|+.
T Consensus 370 p~~ 372 (388)
T 1w3b_A 370 PTF 372 (388)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=4.5e-23 Score=220.42 Aligned_cols=375 Identities=12% Similarity=0.021 Sum_probs=320.9
Q ss_pred HHHHHHhhhhhccCCcCccccccccccCCCCc-hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHH
Q 003946 221 AELILEIGYLFQDGRVDPRKKCNAPLIAMKPN-TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYE 299 (784)
Q Consensus 221 ~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 299 (784)
.|++++|...+. ++. ...|+ ...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.
T Consensus 12 ~g~~~~A~~~~~--~~~----------~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 12 AGDFEAAERHCM--QLW----------RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HTCHHHHHHHHH--HHH----------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH--HHH----------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH
Confidence 388999999988 652 23454 4456666677789999999999999988754 456789999999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCC
Q 003946 300 RNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRT 379 (784)
Q Consensus 300 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (784)
+.|++++|.+.|+.+.+..+.... .|..+..+|.+.|++++|.+.|+++.+.
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------ 130 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFID----GYINLAAALVAAGDMEGAVQAYVSALQY------------------------ 130 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHSCSSHHHHHHHHHHHH------------------------
T ss_pred HCCCHHHHHHHHHHHHHcCcchHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------
Confidence 999999999999999886554444 5999999999999999999999988873
Q ss_pred CCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHH
Q 003946 380 PSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLV 458 (784)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li 458 (784)
.| +...+..+.
T Consensus 131 --------------------------------------------------------------------~p~~~~~~~~l~ 142 (388)
T 1w3b_A 131 --------------------------------------------------------------------NPDLYCVRSDLG 142 (388)
T ss_dssp --------------------------------------------------------------------CTTCTHHHHHHH
T ss_pred --------------------------------------------------------------------CCCcHHHHHHHH
Confidence 33 345777888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR 538 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 538 (784)
..+...|++++|.+.|.++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|+
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 88999999999999999999876 5678889999999999999999999999999875 3468889999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 618 (784)
+++|...|++..+.. +.+..++..+...|...|++++|++.|+++.+.. |.+..++..+...+.+.|++++|.+.|+
T Consensus 219 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 219 FDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998763 2367899999999999999999999999999865 7778899999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 003946 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS 698 (784)
Q Consensus 619 ~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~ 698 (784)
.+.+..+ ++..+|+.+...|.+.|++++|.+.++++.+. .+.+..++..+...+.+.| ++++|...++++.+.
T Consensus 296 ~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~--- 368 (388)
T 1w3b_A 296 TALRLCP--THADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQG-KLQEALMHYKEAIRI--- 368 (388)
T ss_dssp HHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTT-CCHHHHHHHHHHHTT---
T ss_pred HHHhhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh---
Confidence 9998753 46788999999999999999999999999875 2335788999999999999 999999999999872
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 003946 699 TSMNFDEELLDSVLYTFVRGGF 720 (784)
Q Consensus 699 ~~~~p~~~~~~~li~~~~~~g~ 720 (784)
-+.+...|..+...+...|+
T Consensus 369 --~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 --SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp --CTTCHHHHHHHHHHHHHTCC
T ss_pred --CCCCHHHHHhHHHHHHHccC
Confidence 12256778888887776653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=3.9e-20 Score=201.86 Aligned_cols=317 Identities=14% Similarity=0.118 Sum_probs=242.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003946 286 ADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAA 365 (784)
Q Consensus 286 pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 365 (784)
.+...+..+...|.+.|++++|..+|+.+.+..+.+.. +|..+..+|.+.|++++|...|+++.+.+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 90 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI----AYYRRATVFLAMGKSKAALPDLTKVIQLK--------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------
Confidence 34566777777788888888888888887765444433 57778888888888888888887777632
Q ss_pred hchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcC
Q 003946 366 AMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHG 445 (784)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (784)
T Consensus 91 -------------------------------------------------------------------------------- 90 (450)
T 2y4t_A 91 -------------------------------------------------------------------------------- 90 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH---HHHHHHH------------HHHHHcCCHHHHHHH
Q 003946 446 ILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD---AALGHVI------------TLCISLGWLDQAHDL 510 (784)
Q Consensus 446 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~---~~~~~li------------~~~~~~g~~~~a~~~ 510 (784)
+.+...|..+..+|.+.|++++|...|+++.+.. +.+. ..+..+. ..+.+.|++++|...
T Consensus 91 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 91 --MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN---PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2245677777888888888888888888877654 3333 4444443 347788889999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCC
Q 003946 511 LDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIP 590 (784)
Q Consensus 511 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 590 (784)
|+.+.+.. +.+..++..+..+|.+.|++++|..+|+++.+.. ..+..+|..+...|...|++++|+..|+++....
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 241 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-- 241 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 88888764 3477888888888999999999999998887653 3467888888888888999999999998888654
Q ss_pred CCcHHHHHHH------------HHHHHhcCcHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 591 RSGHQEFEML------------VKGCAQNHEAGLMAKLLQEVKEGQRIDCG--VHDWNNVIHFFCKKRLMQDAEKALKRM 656 (784)
Q Consensus 591 ~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m 656 (784)
|.+...+..+ ...|.+.|++++|...|+.+.+..+..|. ..+|..+...|.+.|++++|++.++++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666555 78899999999999999999885532222 457899999999999999999999998
Q ss_pred HhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHH
Q 003946 657 RSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLY 713 (784)
Q Consensus 657 ~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~ 713 (784)
.+. .| +..+|..+..+|...| ++++|...++++.+ +.| +...+..+..
T Consensus 322 ~~~--~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~------~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 322 LQM--EPDNVNALKDRAEAYLIEE-MYDEAIQDYETAQE------HNENDQQIREGLEK 371 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT------TSSSCHHHHHHHHH
T ss_pred HHh--CcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH------hCcchHHHHHHHHH
Confidence 875 35 6889999999999999 99999999999987 233 4566666663
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.2e-19 Score=201.53 Aligned_cols=431 Identities=11% Similarity=-0.024 Sum_probs=320.3
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHH
Q 003946 253 TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCL 332 (784)
Q Consensus 253 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~l 332 (784)
...|...-..+.+.|++++|+..|+++.+.. ||..++..+..+|.+.|++++|...++.+.+..+.+.. +|..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSK----VLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHH----HHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHH----HHHHH
Confidence 3456677788899999999999999999865 89999999999999999999999999999987655544 69999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhh
Q 003946 333 LSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKD 412 (784)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (784)
..+|.+.|++++|...|+++...+.. ........+ ....
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~~-------------------------------------~~~~~~~~~--~~~~-- 118 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGDF-------------------------------------NDASIEPML--ERNL-- 118 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSC-------------------------------------CGGGTHHHH--HHHH--
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCC-------------------------------------ccchHHHHH--HHHH--
Confidence 99999999999999999998874310 000000000 0000
Q ss_pred hhhHHHHHHHHHHHHHHh----------h-----------------hHHHHHHHHhhhc---CCcCC-CHHHHHHHHHHH
Q 003946 413 RKFVALEAEVKRVLQTLL----------G-----------------MLQKQVELITTEH---GILQP-TEKIYIKLVKAF 461 (784)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~----------~-----------------~~~~~~~~~~~~~---~~~~p-~~~~~~~li~~~ 461 (784)
...........+..+. . ......+...... ....| +...+......+
T Consensus 119 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (514)
T 2gw1_A 119 --NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN 196 (514)
T ss_dssp --HHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 0000000000000000 0 0000000000000 00012 244444444444
Q ss_pred HH---cCChHHHHHHHHHHHH-----c--CCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 462 LE---AGKTKELTHFLIKAEK-----E--NLQV----SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 462 ~~---~g~~~~a~~~~~~m~~-----~--~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
.. .|++++|...|+++.+ . .+.. +.+..++..+...+...|++++|...|+.+.+.. |+..++.
T Consensus 197 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~ 274 (514)
T 2gw1_A 197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYI 274 (514)
T ss_dssp HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHH
Confidence 44 8999999999999987 3 1000 2234577888899999999999999999999875 3488899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
.+...|...|++++|...++++.+.. ..+...|..+...+...|++++|+..+++..+.. |.+...+..+...+...
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHc
Confidence 99999999999999999999998764 3467789999999999999999999999998865 66677999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHH---cC
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH-LPN----AQTFHSMVTGYAA---IG 679 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~---~g 679 (784)
|++++|...++.+.+..+. +...|..+...|.+.|++++|...++++.+..- .|+ ...|..+...+.. .|
T Consensus 352 ~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKFPE--APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TCHHHHHHHHHHHHHHSTT--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred CCHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999886532 456799999999999999999999999886421 111 3488888999999 89
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 680 GKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 680 ~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
++++|...++++.+.. +.+...+..+...|.+.|++++|.+.+++..+. .|+.......+
T Consensus 430 -~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~ 489 (514)
T 2gw1_A 430 -NFIEATNLLEKASKLD-----PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQAI 489 (514)
T ss_dssp -HHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHHHH
Confidence 9999999999998732 236788999999999999999999999999984 56655444433
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=2.1e-19 Score=195.96 Aligned_cols=331 Identities=11% Similarity=0.020 Sum_probs=265.7
Q ss_pred CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHH
Q 003946 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFY 329 (784)
Q Consensus 250 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~ 329 (784)
+.+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..+|.+.|++++|...|+.+.+..+.... +|
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~ 97 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA----AR 97 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH----HH
Confidence 4567789999999999999999999999998763 446788999999999999999999999999987655544 69
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhh
Q 003946 330 NCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDF 409 (784)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (784)
..+..+|.+.|++++|.+.|+++.+.+. ..
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------------------------------~~------------ 127 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNP--------------------------------------SE------------ 127 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCC--------------------------------------CH------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------------------------------CC------------
Confidence 9999999999999999999999876321 00
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHH
Q 003946 410 TKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDA 489 (784)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~ 489 (784)
.........+. ..+ ....+..+...+.+.|++++|...|+++.+.. +.+..
T Consensus 128 ----------~~~~~~~~~l~-~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~ 178 (450)
T 2y4t_A 128 ----------NEEKEAQSQLI-KSD---------------EMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWDAE 178 (450)
T ss_dssp ----------HHHHHHHHHHH-HHH---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHH
T ss_pred ----------hhhHHHHHHHH-HHH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChH
Confidence 00000000000 000 00123344566899999999999999999876 67888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-----
Q 003946 490 ALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL----- 564 (784)
Q Consensus 490 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----- 564 (784)
++..+..+|.+.|++++|..+|+.+.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 89999999999999999999999998764 3478999999999999999999999999998763 2244445544
Q ss_pred -------HHHHHHcCChhHHHHHHHHhHhcCCCCCc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHH
Q 003946 565 -------LQSKIVQKDTPGALHLFKEMKESKIPRSG----HQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDW 633 (784)
Q Consensus 565 -------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y 633 (784)
...|...|++++|+..|+++.+.. |.+ ...+..+...+.+.|++++|...++.+.+..+ .+...|
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~ 332 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP--DNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHH
Confidence 788999999999999999998864 444 34788899999999999999999999887542 357889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 003946 634 NNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMV 672 (784)
Q Consensus 634 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 672 (784)
..+..+|...|++++|.+.+++..+ +.|+ ...+..+.
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 9999999999999999999999998 4575 55555554
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.7e-19 Score=196.81 Aligned_cols=443 Identities=12% Similarity=0.046 Sum_probs=261.3
Q ss_pred hHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHH
Q 003946 90 PAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLI 169 (784)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 169 (784)
...|......+...|++++|+..|+++.+.. |+...+..+...+.+.|+ .++|...+.++... . +.++..+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~-~--p~~~~~~~ 77 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGD---LKKVVEMSTKALEL-K--PDYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH-C--SCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhh---HHHHHHHHHHHhcc-C--hHHHHHHH
Confidence 4567778889999999999999999999876 788888888888887655 55677788887776 2 23556788
Q ss_pred HHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCC
Q 003946 170 YLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAM 249 (784)
Q Consensus 170 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~ 249 (784)
.+..+|.+.|++++|...|+++.+.+. ++......++..+... .....+.+.+. .+.. .+.
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~l~--~~~~--------~~~ 138 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNK--------QAMSKLKEKFG--DIDT--------ATA 138 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHH--------HHHHHHTTC-------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHH--------HHHHHHHHHHH--HHHH--------HHH
Confidence 899999999999999999999998753 3445555555544442 34444444443 3322 111
Q ss_pred CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCC--------C-ChhHHHHHHHHHHh---cCCHHHHHHHHHHHHh-
Q 003946 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVK--------A-DSNLLIIMAHIYER---NGRREELRKLQRHIDE- 316 (784)
Q Consensus 250 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~--------p-d~~~~~~li~~~~~---~g~~~~A~~l~~~~~~- 316 (784)
.|+...++.-...............+...+...... | +...+......+.. .|++++|...|+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 139 TPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp ------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred hhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 222222222111111111111111111111111111 2 23333334343443 6788888888877766
Q ss_pred ----h--cCCCh---hhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccC
Q 003946 317 ----A--VNLSD---IQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNC 387 (784)
Q Consensus 317 ----~--~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (784)
. .+... .....+|..+...|.+.|++++|...|++..+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------------------------------- 266 (514)
T 2gw1_A 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-------------------------------- 266 (514)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------------------------------
T ss_pred hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------------------------------
Confidence 2 11110 111225777777777777777777777776652
Q ss_pred CCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCCh
Q 003946 388 TNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKT 467 (784)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 467 (784)
.|+...|..+...+...|++
T Consensus 267 ------------------------------------------------------------~~~~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 267 ------------------------------------------------------------FPRVNSYIYMALIMADRNDS 286 (514)
T ss_dssp ------------------------------------------------------------CCCHHHHHHHHHHHHTSSCC
T ss_pred ------------------------------------------------------------CccHHHHHHHHHHHHHCCCH
Confidence 22256677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003946 468 KELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLR 547 (784)
Q Consensus 468 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 547 (784)
++|...++++.... +.+..++..+...+...|++++|...|+...+... .+..++..+...|...|++++|...++
T Consensus 287 ~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 287 TEYYNYFDKALKLD---SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp TTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777654 44555677777777777777777777777776542 245666777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCc----HHHHHHHHHHHHh---cCcHHHHHHHHHHH
Q 003946 548 DARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSG----HQEFEMLVKGCAQ---NHEAGLMAKLLQEV 620 (784)
Q Consensus 548 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~ 620 (784)
++.+.. ..+...|..+...+...|++++|+..++++.+.....+. ...+..+...+.. .|++++|...|+..
T Consensus 363 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 776543 224556666667777777777777777666553211110 1245555555555 55555555555555
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 621 KEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 621 ~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
....+ .+..+|..+...|.+.|++++|.+.|++..+
T Consensus 442 ~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 442 SKLDP--RSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 54332 1334455555555555555555555555554
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=3.6e-17 Score=182.73 Aligned_cols=414 Identities=12% Similarity=-0.011 Sum_probs=301.3
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHH
Q 003946 253 TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCL 332 (784)
Q Consensus 253 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~l 332 (784)
...|...-..+.+.|++++|+..|+.+.+.. +.+..++..+..+|.+.|++++|.+.|+.+.+.++.+.. +|..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l 99 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSK----ALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHH----HHHHH
Confidence 4577888889999999999999999999865 346788999999999999999999999999987655544 59999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhh
Q 003946 333 LSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKD 412 (784)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (784)
..+|.+.|++++|...|+.+..... . .... +.. ..
T Consensus 100 a~~~~~~g~~~~A~~~~~~~~~~~~-~------------------------------------~~~~---~~~---~~-- 134 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLSVLSLNGD-F------------------------------------DGAS---IEP---ML-- 134 (537)
T ss_dssp HHHHHHHTCHHHHHHHHHHHC---------------------------------------------------C---HH--
T ss_pred HHHHHHcCCHHHHHHHHHHHhcCCC-C------------------------------------ChHH---HHH---HH--
Confidence 9999999999999999964422110 0 0000 000 00
Q ss_pred hhhHHHHHHHHHHHHHHhhhHH----------------H----HHHHHhhhc--CCcCCCHH-HHHHHHHHHH-------
Q 003946 413 RKFVALEAEVKRVLQTLLGMLQ----------------K----QVELITTEH--GILQPTEK-IYIKLVKAFL------- 462 (784)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~----------------~----~~~~~~~~~--~~~~p~~~-~~~~li~~~~------- 462 (784)
.......+...+........ . ......... ....+... .+..+...+.
T Consensus 135 --~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (537)
T 3fp2_A 135 --ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212 (537)
T ss_dssp --HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence 00000111111111111000 0 000000000 00111111 2222222221
Q ss_pred -HcCChHHHHHHHHHHHHcCCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003946 463 -EAGKTKELTHFLIKAEKENLQVSHDD-------AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI 534 (784)
Q Consensus 463 -~~g~~~~a~~~~~~m~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 534 (784)
..|++++|..+|+++.+.. +.+. .++..+...+...|++++|...|+...+.. |+..++..+...|.
T Consensus 213 ~a~~~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLSAN---TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHC---CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHH
Confidence 2257899999999998765 3332 346667778888999999999999999874 66889999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHH
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMA 614 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 614 (784)
..|++++|...|+++.+.. ..+..+|..+...+...|++++|+..+++..+.. |.+...+..+...+...|++++|.
T Consensus 288 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998764 3468889999999999999999999999999865 666789999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHc----------C
Q 003946 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLG-----HLPNAQTFHSMVTGYAAI----------G 679 (784)
Q Consensus 615 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~a~~~~----------g 679 (784)
+.++.+.+..+ .+...|..+...|...|++++|.+.+++..+.. .......+......+... |
T Consensus 365 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 365 AFFNETKLKFP--TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 99999988754 246679999999999999999999999987642 111223344455667777 8
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 680 GKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 680 ~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
++++|...+++..+. -+.+...+..+...|.+.|++++|.+.+++..+.
T Consensus 443 -~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 443 -KFNAAIKLLTKACEL-----DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp -HHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999873 2236788999999999999999999999999974
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=8.6e-17 Score=179.62 Aligned_cols=442 Identities=14% Similarity=0.079 Sum_probs=303.4
Q ss_pred ChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchH
Q 003946 89 DPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPL 168 (784)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 168 (784)
.+..|..+...+.+.|++++|+..|+++.+..+ .+...+..+...+.+.| +.++|...+.++... .+ .++..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~-~p--~~~~~~ 96 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTG---DLEKVIEFTTKALEI-KP--DHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHH-CT--TCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHhc-CC--chHHHH
Confidence 356788889999999999999999999998652 24456667777777654 456688888888776 22 356677
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccC
Q 003946 169 IYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIA 248 (784)
Q Consensus 169 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~ 248 (784)
..+...|...|++++|...|+.+. . .|+.. +..+..+.. .+...+|...++ ++....... ...
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~~~-~--~~~~~--~~~~~~~~~--------~~~~~~a~~~~~--~~l~~~~~~--~~~ 159 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSVLS-L--NGDFD--GASIEPMLE--------RNLNKQAMKVLN--ENLSKDEGR--GSQ 159 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHC----------------CHHH--------HHHHHHHHHHHH--HHCC---------C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-c--CCCCC--hHHHHHHHH--------HHHHHHHHHHHH--HHHHhCccc--ccc
Confidence 788999999999999999997443 2 22222 222222222 266667777776 442200000 011
Q ss_pred CCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChh-HHHHHHHHHHh--------cCCHHHHHHHHHHHHhhcC
Q 003946 249 MKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSN-LLIIMAHIYER--------NGRREELRKLQRHIDEAVN 319 (784)
Q Consensus 249 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-~~~~li~~~~~--------~g~~~~A~~l~~~~~~~~~ 319 (784)
..|+ +..+..+....+.+.+...+...... .+... ....+...+.. .|++++|..+++.+.+..+
T Consensus 160 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 160 VLPS----NTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp CCCC----HHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred ccch----HhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 2333 33444555667777777666555432 22222 33333333322 2478899999999888654
Q ss_pred CChhh---HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccc
Q 003946 320 LSDIQ---FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENS 396 (784)
Q Consensus 320 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (784)
.+... ...+|..+...+...|++++|...|++...
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~------------------------------------------ 271 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN------------------------------------------ 271 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------------
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh------------------------------------------
Confidence 44321 012467777888889999999999988877
Q ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003946 397 GIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIK 476 (784)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 476 (784)
..|+...|..+...+...|++++|...|.+
T Consensus 272 --------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 272 --------------------------------------------------LHPTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp --------------------------------------------------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred --------------------------------------------------cCCCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 255567888888899999999999999999
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 477 AEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQL 556 (784)
Q Consensus 477 m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 556 (784)
+.+.. +.+..++..+...+...|++++|...|+...+.. +.+..++..+...|...|++++|...++++.+.. +.
T Consensus 302 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 376 (537)
T 3fp2_A 302 AVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PT 376 (537)
T ss_dssp HHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 98876 5677888899999999999999999999998865 2356788889999999999999999999988764 34
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC----CCCcHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHh
Q 003946 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKI----PRSGHQEFEMLVKGCAQN----------HEAGLMAKLLQEVKE 622 (784)
Q Consensus 557 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~ 622 (784)
+...|..+...+...|++++|+..|+++.+... .......+......+... |++++|...|+...+
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 567888888999999999999999998776431 011112233444556666 778888888877776
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 623 GQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 623 ~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
..+ .+...|..+...|.+.|++++|.+.|++..+.
T Consensus 457 ~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 457 LDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 543 24566777777788888888888888777764
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=4.6e-16 Score=163.51 Aligned_cols=234 Identities=13% Similarity=0.105 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVS---HDDAALGHV------------ITLCISLGWLDQAHDLLDEMH 515 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~ 515 (784)
...|..+...+...|++++|...|.+..+.. + .+...+..+ ...+...|++++|...++.+.
T Consensus 71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3455555555555566666666555555433 1 122222222 244445555555555555554
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHH
Q 003946 516 LAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQ 595 (784)
Q Consensus 516 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 595 (784)
+.. +.+..++..+...|...|++++|...+++..+.. +.+..+|..+...+...|++++|...+++..+.. |.+..
T Consensus 148 ~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~ 223 (359)
T 3ieg_A 148 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKR 223 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchH
Confidence 432 2244445555555555555555555555554432 2244445555555555555555555555544433 23222
Q ss_pred HHHH------------HHHHHHhcCcHHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003946 596 EFEM------------LVKGCAQNHEAGLMAKLLQEVKEGQRIDCGV--HDWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661 (784)
Q Consensus 596 ~~~~------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 661 (784)
.+.. +...+.+.|++++|...++...+..+..|.. ..|..+...|...|++++|.+.+++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-- 301 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-- 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 2221 1333444444444444444444432211110 12333444445555555555555554442
Q ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 662 LP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 662 ~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
.| +..+|..+...+...| ++++|...+++..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEE-MYDEAIQDYEAAQE 334 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Confidence 22 3444444444555555 55555555555444
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=1.6e-15 Score=159.29 Aligned_cols=333 Identities=11% Similarity=0.005 Sum_probs=261.3
Q ss_pred chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 252 NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 252 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
|...|..+...+.+.|++++|+..|+.+.+.. +.+..++..+...|...|++++|...++.+.+..+.... +|..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA----ARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcch----HHHH
Confidence 34567788888999999999999999998864 345688899999999999999999999999887554443 6999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhh
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTK 411 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (784)
+...|.+.|++++|...|++..+.+. ..
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------------~~-------------- 104 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNP--------------------------------------SE-------------- 104 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCC--------------------------------------CH--------------
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCC--------------------------------------cc--------------
Confidence 99999999999999999998876310 00
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHH
Q 003946 412 DRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAAL 491 (784)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~ 491 (784)
.........+... .....+..+...+...|++++|...++++.+.. +.+..++
T Consensus 105 -----~~~~~~~~~l~~~-------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~ 157 (359)
T 3ieg_A 105 -----QEEKEAESQLVKA-------------------DEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDAELR 157 (359)
T ss_dssp -----HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred -----cChHHHHHHHHHH-------------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCchHHH
Confidence 0000000000000 001233445678899999999999999999886 6678889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH---------
Q 003946 492 GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYE--------- 562 (784)
Q Consensus 492 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--------- 562 (784)
..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...|++..+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence 999999999999999999999999874 4578999999999999999999999999998764 22333333
Q ss_pred ---HHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHH----HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 003946 563 ---ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQ----EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNN 635 (784)
Q Consensus 563 ---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~ 635 (784)
.+...+...|++++|+..++++.+.. |.+.. .+..+...+.+.|++++|.+.++...+..+ .+...|..
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~ 311 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP--DNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccHHHHHH
Confidence 23566889999999999999998865 44442 355677899999999999999999988643 26778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 003946 636 VIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYA 676 (784)
Q Consensus 636 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~ 676 (784)
+...|...|++++|.+.|++..+. .|+ ...+..+..+..
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 999999999999999999999985 565 555555555443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.8e-15 Score=155.55 Aligned_cols=287 Identities=10% Similarity=-0.029 Sum_probs=185.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 003946 285 KADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLA 364 (784)
Q Consensus 285 ~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 364 (784)
+.+...+..+...+...|++++|.++|+.+.+..+.+.. .+..++..+.+.|++++|..+++++.+.+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------- 86 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS----CLPVHIGTLVELNKANELFYLSHKLVDLY-------- 86 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT----THHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh----hHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------
Confidence 345556666677777777777777777777765444433 36666777777777777777777776521
Q ss_pred HhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q 003946 365 AAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEH 444 (784)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (784)
T Consensus 87 -------------------------------------------------------------------------------- 86 (330)
T 3hym_B 87 -------------------------------------------------------------------------------- 86 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003946 445 GILQPTEKIYIKLVKAFLEAG-KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASS 523 (784)
Q Consensus 445 ~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 523 (784)
+.+...|..+...+...| ++++|...|.+..+.. +.+...|..+...+...|++++|...|+...+... .+.
T Consensus 87 ---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~ 159 (330)
T 3hym_B 87 ---PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCH 159 (330)
T ss_dssp ---TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCS
T ss_pred ---cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccH
Confidence 223456667777777777 7777777777777655 44455677777777777777777777777776542 244
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC-------CCCcHHH
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI-------PRSGHQE 596 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~~~ 596 (784)
..+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|+..+++..+... .|....+
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 556667777777777777777777776653 23566777777777777777777777777665321 1233345
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGY 675 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~ 675 (784)
+..+...+...|++++|...++...+..+ .+...|..+...|.+.|++++|.+.+++..+. .| +...+..+..++
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 66666666666666666666666655432 13455666666666677777777776666553 34 445555555555
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=2.9e-15 Score=155.40 Aligned_cols=296 Identities=7% Similarity=-0.060 Sum_probs=246.2
Q ss_pred CCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHH
Q 003946 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQ 327 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 327 (784)
+.+.+...+......+...|++++|+.+|+.+.+.. +.+...+..++..+.+.|++++|..+++.+.+..+.+..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---- 91 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV---- 91 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH----
Confidence 446666778888888999999999999999998764 345566777888899999999999999999987555544
Q ss_pred HHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccch
Q 003946 328 FYNCLLSCHLKFG-DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSY 406 (784)
Q Consensus 328 ~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (784)
+|..+...|...| ++++|.+.|++..+.+
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-------------------------------------------------- 121 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLE-------------------------------------------------- 121 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--------------------------------------------------
Confidence 5999999999999 9999999999887621
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC
Q 003946 407 EDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSH 486 (784)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p 486 (784)
+.+...|..+...+...|++++|...|.++.+.. +.
T Consensus 122 -----------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~ 157 (330)
T 3hym_B 122 -----------------------------------------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KG 157 (330)
T ss_dssp -----------------------------------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TT
T ss_pred -----------------------------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cc
Confidence 2245678899999999999999999999999876 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------CCCCH
Q 003946 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAG--------IQLDA 558 (784)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~ 558 (784)
+...+..+...+...|++++|...+++..+.. +.+..++..+...|...|++++|...+++..+.. ...+.
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 56667779999999999999999999999875 4478899999999999999999999999987642 13345
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
.+|..+...+...|++++|+..+++..+.. |.+...+..+...+.+.|++++|.+.|+...+..+ .+...+..+..
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 312 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR--DDTFSVTMLGH 312 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC--CchHHHHHHHH
Confidence 789999999999999999999999998865 66778999999999999999999999999987542 25667888887
Q ss_pred HH-HhcCCHH
Q 003946 639 FF-CKKRLMQ 647 (784)
Q Consensus 639 ~~-~~~g~~~ 647 (784)
++ ...|+.+
T Consensus 313 ~~~~~~g~~~ 322 (330)
T 3hym_B 313 CIEMYIGDSE 322 (330)
T ss_dssp HHHTTTTC--
T ss_pred HHHHHhCchh
Confidence 77 4556543
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=2.1e-18 Score=191.54 Aligned_cols=151 Identities=14% Similarity=0.122 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEK---ENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
..|||+||++|++.|++++|.++|.+|.+ .| +.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG--~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR--KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH--TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC--CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 47999999999999999999999988764 46 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC-----CcHHHHHHHH
Q 003946 528 SLLKAYIEANRP-REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR-----SGHQEFEMLV 601 (784)
Q Consensus 528 ~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~~ll 601 (784)
+||+++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..+..| +...+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999985 78999999999999999999999999877754 444444444 223322 2223444555
Q ss_pred HHHHhcC
Q 003946 602 KGCAQNH 608 (784)
Q Consensus 602 ~~~~~~~ 608 (784)
..|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5666544
No 18
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=3.9e-18 Score=189.49 Aligned_cols=171 Identities=15% Similarity=0.122 Sum_probs=133.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHL---AGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
..-..||+++|++||+.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34457899999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003946 562 EALLQSKIVQKDT-PGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFF 640 (784)
Q Consensus 562 ~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 640 (784)
|+||.++++.|+. ++|.++|++|.+.|+. |+.++|++++.++.+.+-++.+.++...+.-.....|.+.+-+.|.+.|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~-PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLK-LQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCC-SHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCC-CChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999999985 7899999999999985 5688999999877765433333222221111111112244556677777
Q ss_pred HhcC---------CHHHHHHHHHHH
Q 003946 641 CKKR---------LMQDAEKALKRM 656 (784)
Q Consensus 641 ~~~g---------~~~~A~~~~~~m 656 (784)
.+.+ ..++-.++|++=
T Consensus 283 s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 283 AKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred ccCCCCcCccccCCHHHHHHHHHHH
Confidence 7666 245555666543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=1.8e-15 Score=159.85 Aligned_cols=304 Identities=9% Similarity=-0.053 Sum_probs=169.8
Q ss_pred hcCChhHHHH-HHHhhhhCCC-CC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcC
Q 003946 265 LFETTRKAEQ-LLDIMPRIGV-KA--DSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 265 ~~g~~~~A~~-l~~~m~~~g~-~p--d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (784)
..|++++|+. .|+...+..- .| +...+..+...+.+.|++++|...|+.+.+..+.... +|..+..+|.+.|
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g 112 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME----AWQYLGTTQAENE 112 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCc
Confidence 4578899988 8887665321 11 3456778888899999999999999998886544443 5889999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHH
Q 003946 341 DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEA 420 (784)
Q Consensus 341 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (784)
++++|.+.|++..+.+
T Consensus 113 ~~~~A~~~~~~al~~~---------------------------------------------------------------- 128 (368)
T 1fch_A 113 QELLAISALRRCLELK---------------------------------------------------------------- 128 (368)
T ss_dssp CHHHHHHHHHHHHHHC----------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhcC----------------------------------------------------------------
Confidence 9999999998887632
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 003946 421 EVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS 500 (784)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 500 (784)
+.+..+|..+...+...|++++|...|.++.... +.+...+..+...
T Consensus 129 ---------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~--- 175 (368)
T 1fch_A 129 ---------------------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT---PAYAHLVTPAEEG--- 175 (368)
T ss_dssp ---------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTGGGCC--------
T ss_pred ---------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHH---
Confidence 3356788889999999999999999999988765 2222222111000
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 003946 501 LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALH 579 (784)
Q Consensus 501 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~ 579 (784)
.. ...+ ...+..+...+ ..|++++|...|+++.+..... +..++..+...|...|++++|+.
T Consensus 176 ----~~-----------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 176 ----AG-----------GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp --------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----hh-----------hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 00 0000 00011111112 4444555555555544432110 24444555555555555555555
Q ss_pred HHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 580 LFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 580 ~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
.++++.+.. |.+..++..+...+...|++++|...|+.+.+..+ .+...|..+...|.+.|++++|.+.|++..+.
T Consensus 239 ~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 239 CFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP--GYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555544432 34444555555555555555555555555544321 23445666666666666666666666665542
Q ss_pred CCC----------CCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003946 660 GHL----------PNAQTFHSMVTGYAAIGGKYTEVTELWGE 691 (784)
Q Consensus 660 g~~----------p~~~~~~~ll~a~~~~g~~~~~a~~~~~~ 691 (784)
.-. ....+|..+..+|...| ++++|..++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 355 (368)
T 1fch_A 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLG-QSDAYGAADAR 355 (368)
T ss_dssp HHTC------CCCCCHHHHHHHHHHHHHHT-CGGGHHHHHTT
T ss_pred CCCCCCccccccchhhHHHHHHHHHHHHhC-ChHhHHHhHHH
Confidence 100 01456666666666666 66666666553
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=2.5e-12 Score=147.92 Aligned_cols=477 Identities=12% Similarity=0.079 Sum_probs=305.8
Q ss_pred cccccccccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCC--CCCchhHHHHHHHHHhccChhhHHHHHHHHHH
Q 003946 76 FSSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDG--FPRKTLVNKILTSFVESLDSKWLEKAYGLVEQ 153 (784)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 153 (784)
.++...+..+...+|.--...+++|...|.+.+|++++++..-.+. .-+....+.++....+. +.+++.+....+..
T Consensus 971 idqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~ 1049 (1630)
T 1xi4_A 971 IDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN 1049 (1630)
T ss_pred HHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh
Confidence 3344444555566676677777888888888888888888773221 02234445566555554 44444443333331
Q ss_pred HHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhcc
Q 003946 154 AFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQD 233 (784)
Q Consensus 154 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~ 233 (784)
. ...-+...+...|.+++|..+|++... .....+.++. . .+.+++|.++.+
T Consensus 1050 ~------------d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~--------i~nldrAiE~Ae- 1100 (1630)
T 1xi4_A 1050 Y------------DAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---H--------IGNLDRAYEFAE- 1100 (1630)
T ss_pred c------------cHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---H--------HhhHHHHHHHHH-
Confidence 1 122255666778888888888887531 2222344432 1 377888887777
Q ss_pred CCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 234 GRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRH 313 (784)
Q Consensus 234 ~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~ 313 (784)
+.. +..+|..+-.++.+.|++++|+..|... -|...|.-++..|.+.|++++|.+.+..
T Consensus 1101 -rvn--------------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1101 -RCN--------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred -hcC--------------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 441 2456778888888888888888888542 3566777788888888888888888877
Q ss_pred HHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccc
Q 003946 314 IDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDL 393 (784)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (784)
..+...... +.+.++.+|++.+++++... | ..
T Consensus 1160 Ark~~~e~~-----Idt~LafaYAKl~rleele~-f---I~--------------------------------------- 1191 (1630)
T 1xi4_A 1160 ARKKARESY-----VETELIFALAKTNRLAELEE-F---IN--------------------------------------- 1191 (1630)
T ss_pred HHhhccccc-----ccHHHHHHHHhhcCHHHHHH-H---Hh---------------------------------------
Confidence 666432211 24457888888877764332 2 11
Q ss_pred cccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 394 ENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHF 473 (784)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 473 (784)
.|+...|..+...|...|++++|..+
T Consensus 1192 ------------------------------------------------------~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1192 ------------------------------------------------------GPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred ------------------------------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34445677788899999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003946 474 LIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAG 553 (784)
Q Consensus 474 ~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 553 (784)
|... ..|..+...+++.|+++.|.+.+++. .+..+|..+-.+|...|++..|......+
T Consensus 1218 Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I---- 1276 (1630)
T 1xi4_A 1218 YNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI---- 1276 (1630)
T ss_pred HHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh----
Confidence 9884 24888999999999999999999876 36789999999999999999988876653
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhcCCCCC---
Q 003946 554 IQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN--HEAGLMAKLLQEVKEGQRIDC--- 628 (784)
Q Consensus 554 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~p--- 628 (784)
..+...+..++..|.+.|.+++|+.+++...... +.....|+-+...+++- ++..++.++|..-.. +.|
T Consensus 1277 -iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklmEhlk~f~~rin---i~k~~r 1350 (1630)
T 1xi4_A 1277 -VVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN---IPKVLR 1350 (1630)
T ss_pred -hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc---cchHhH
Confidence 3466677799999999999999999998776544 55555676666666664 455566666554332 222
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 629 ---GVHDWNNVIHFFCKKRLMQDAEKA-------------LKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 629 ---~~~~y~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
+...|.-++..|.+.|+++.|... |.+... -..|...|.-.+.-|...+ ..+..-+...
T Consensus 1351 ~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~---P~~lndLl~~ 1425 (1630)
T 1xi4_A 1351 AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK---PLLLNDLLMV 1425 (1630)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC---hHHHHHHHHH
Confidence 466799999999999999998842 222221 1235555655555555322 2222222222
Q ss_pred HhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003946 693 KSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTL 746 (784)
Q Consensus 693 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 746 (784)
.. ..+. ++-.+..+.+.|.+.-+...+......+...=..+++.+
T Consensus 1426 l~----~rlD-----~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el 1470 (1630)
T 1xi4_A 1426 LS----PRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNL 1470 (1630)
T ss_pred hh----hcCC-----hHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHH
Confidence 21 1121 233555666666666666666666554433333333333
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=8.8e-13 Score=151.58 Aligned_cols=412 Identities=12% Similarity=0.138 Sum_probs=299.0
Q ss_pred HhccChhhHHHHH--------HHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcC--CCCChHHHHH
Q 003946 136 VESLDSKWLEKAY--------GLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATE--QYPPVTAWSA 205 (784)
Q Consensus 136 ~~~~~~~~~~~a~--------~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ 205 (784)
.+..+.+.+..++ +++++.....-+...+|+-....+.+|...|.+.+|++++++..-.+ +.-+...-|.
T Consensus 948 v~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 948 VRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred HHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 3334555555554 45555444333445788888889999999999999999999998331 1123455666
Q ss_pred HHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCC
Q 003946 206 ILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVK 285 (784)
Q Consensus 206 ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~ 285 (784)
++....+.. .++..+....++ . ....-+-..+...|.+++|..+|+...
T Consensus 1028 Li~tAIkaD------~~Rv~eyI~kLd--~------------------~d~~eIA~Iai~lglyEEAf~IYkKa~----- 1076 (1630)
T 1xi4_A 1028 LILTAIKAD------RTRVMEYINRLD--N------------------YDAPDIANIAISNELFEEAFAIFRKFD----- 1076 (1630)
T ss_pred HHHHHHHhC------hhhHHHHHHHhh--h------------------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----
Confidence 666555531 244444443333 1 113346677888999999999999852
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003946 286 ADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAA 365 (784)
Q Consensus 286 pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 365 (784)
-.....+.++ -..+++++|.++.++... +. +|..+..++.+.|++++|++.|.+-
T Consensus 1077 ~~~~A~~VLi---e~i~nldrAiE~Aervn~---p~------vWsqLAKAql~~G~~kEAIdsYiKA------------- 1131 (1630)
T 1xi4_A 1077 VNTSAVQVLI---EHIGNLDRAYEFAERCNE---PA------VWSQLAKAQLQKGMVKEAIDSYIKA------------- 1131 (1630)
T ss_pred CHHHHHHHHH---HHHhhHHHHHHHHHhcCC---HH------HHHHHHHHHHhCCCHHHHHHHHHhc-------------
Confidence 1222233332 377889999998886522 21 7999999999999999999998432
Q ss_pred hchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcC
Q 003946 366 AMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHG 445 (784)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (784)
T Consensus 1132 -------------------------------------------------------------------------------- 1131 (1630)
T 1xi4_A 1132 -------------------------------------------------------------------------------- 1131 (1630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003946 446 ILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSV 525 (784)
Q Consensus 446 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 525 (784)
-|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. + .++...
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 234567789999999999999999999877654 23323345999999999998644442 2 357777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
|..+...|...|++++|..+|... ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHh
Confidence 888999999999999999999985 48999999999999999999999876 23579999999999
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CCHHH
Q 003946 606 QNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG-GKYTE 684 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g-~~~~~ 684 (784)
..|++..|......+.. +...+..++..|.+.|.+++|+.+++.-+... .-....|+-+...|++.. ++..+
T Consensus 1262 e~~Ef~LA~~cgl~Iiv------~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhHHHHHHHHHHhhhc------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 99999999998776542 44558899999999999999999998887543 234556766666666643 13444
Q ss_pred HHHHHHHHHhcccCCCCCC------CHHHHHHHHHHHHhcCChHHHHH
Q 003946 685 VTELWGEMKSFASSTSMNF------DEELLDSVLYTFVRGGFFARANE 726 (784)
Q Consensus 685 a~~~~~~m~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~ 726 (784)
+.++|..- .+++| +...|.-++..|.+.|+++.|..
T Consensus 1335 hlk~f~~r------ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1335 HLELFWSR------VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHh------cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44444422 22333 56789999999999999999984
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=3.8e-15 Score=157.33 Aligned_cols=275 Identities=12% Similarity=-0.052 Sum_probs=186.0
Q ss_pred HHHHHhhh-hhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh
Q 003946 222 ELILEIGY-LFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER 300 (784)
Q Consensus 222 ~~~~~a~~-~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 300 (784)
|.+++|+. .|+ +...... .....+...|..+...+.+.|++++|+..|+.+.+.. +.+..++..+...|.+
T Consensus 39 ~~~~~a~~~~~~--~a~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 110 (368)
T 1fch_A 39 SDYDDLTSATYD--KGYQFEE-----ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAE 110 (368)
T ss_dssp -------CHHHH--CCCCCCS-----SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh--HHHhcCC-----CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 67788887 666 4322000 1112245678889999999999999999999999864 4466789999999999
Q ss_pred cCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCC
Q 003946 301 NGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTP 380 (784)
Q Consensus 301 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (784)
.|++++|.+.|+.+.+..+.... +|..+...|.+.|++++|.+.|+++...+. ..
T Consensus 111 ~g~~~~A~~~~~~al~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~~--- 165 (368)
T 1fch_A 111 NEQELLAISALRRCLELKPDNQT----ALMALAVSFTNESLQRQACEILRDWLRYTP------------------AY--- 165 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHTST------------------TT---
T ss_pred CcCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------------------Cc---
Confidence 99999999999999887655444 699999999999999999999999887431 00
Q ss_pred CCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHH
Q 003946 381 SEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKA 460 (784)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 460 (784)
...+....... ....+. ..+. .+..
T Consensus 166 ----------------~~~~~~~~~~~-------------------------------------~~~~~~-~~~~-~~~~ 190 (368)
T 1fch_A 166 ----------------AHLVTPAEEGA-------------------------------------GGAGLG-PSKR-ILGS 190 (368)
T ss_dssp ----------------GGGCC-----------------------------------------------------C-TTHH
T ss_pred ----------------HHHHHHHHHHh-------------------------------------hhhccc-HHHH-HHHH
Confidence 00000000000 000111 1111 2222
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003946 461 FLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPR 540 (784)
Q Consensus 461 ~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 540 (784)
+...|++++|...|.++.+..+ -.++..++..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|+++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDP-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HhhcccHHHHHHHHHHHHHhCc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence 3377888888888888877652 11257778888888888888888888888887763 335777888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 541 EVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
+|...|+++.+.. +.+...|..+...|...|++++|...|+++.+.
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888876653 235667777777777778888887777776653
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=1.6e-12 Score=142.89 Aligned_cols=354 Identities=8% Similarity=-0.050 Sum_probs=292.4
Q ss_pred CchhhHHHHHHHhhh----cCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCh
Q 003946 251 PNTNTFNIALAGCLL----FETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER----NGRREELRKLQRHIDEAVNLSD 322 (784)
Q Consensus 251 p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~ 322 (784)
.|..++..+-..|.. .+++++|+..|+...+.| +...+..|...|.. .++.++|.+.|+...+.+.+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-- 111 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLP-- 111 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH--
Confidence 355566666666766 899999999999998865 56778888888998 89999999999998875432
Q ss_pred hhHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccc
Q 003946 323 IQFRQFYNCLLSCHLK----FGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGI 398 (784)
Q Consensus 323 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (784)
. .+..|-..|.. .+++++|...|++..+.+
T Consensus 112 ~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------------------------------------------ 145 (490)
T 2xm6_A 112 Q----AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG------------------------------------------ 145 (490)
T ss_dssp H----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------------------------
T ss_pred H----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------------------------------------------
Confidence 2 47778888888 789999999998776532
Q ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHH----cCChHHHHHHH
Q 003946 399 IENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLE----AGKTKELTHFL 474 (784)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~ 474 (784)
++..+..+...|.. .+++++|.+.|
T Consensus 146 ---------------------------------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 146 ---------------------------------------------------RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp ---------------------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred ---------------------------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 23455666667766 78999999999
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHH
Q 003946 475 IKAEKENLQVSHDDAALGHVITLCIS----LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE----ANRPREVTALL 546 (784)
Q Consensus 475 ~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 546 (784)
++..+.+ +...+..+...|.. .+++++|...|+...+.| +...+..+...|.. .++.++|...|
T Consensus 175 ~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 175 SKAAEQG-----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHCC-----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9998766 46667788888887 899999999999999875 67888888888887 78999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc-----CcHHHHHHHH
Q 003946 547 RDARSAGIQLDASCYEALLQSKIV----QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN-----HEAGLMAKLL 617 (784)
Q Consensus 547 ~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~ 617 (784)
++..+.| +...+..+-..|.. .++.++|+..|++..+.| +...+..+...|... +++++|...|
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 9998754 56677777777777 889999999999998765 355777888888887 8999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHH
Q 003946 618 QEVKEGQRIDCGVHDWNNVIHFFCKKR---LMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA----IGGKYTEVTELWG 690 (784)
Q Consensus 618 ~~~~~~~~~~p~~~~y~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~~a~~~~~ 690 (784)
+...+.+ +...+..+...|...| +.++|++.|++..+.| +...+..+-..|.. .+ ++++|...++
T Consensus 320 ~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~ 391 (490)
T 2xm6_A 320 TKSAEQG----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKK-DEQQAAIWMR 391 (490)
T ss_dssp HHHHHTT----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHH
T ss_pred HHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHH
Confidence 9998764 5567888888888867 7899999999999874 67888888888888 78 9999999999
Q ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 003946 691 EMKSFASSTSMNFDEELLDSVLYTFVR----GGFFARANEVVAMMEEGKM 736 (784)
Q Consensus 691 ~m~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 736 (784)
+..+ .+ ++..+..|...|.. .++.++|.+.+++..+.|.
T Consensus 392 ~A~~----~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 392 KAAE----QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHH----TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHh----CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9887 22 57788899999998 8999999999999998763
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=4.7e-15 Score=156.52 Aligned_cols=268 Identities=10% Similarity=-0.011 Sum_probs=222.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|++..+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 44568889999999999999999999999886 6788899999999999999999999999999875 3468999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCC--cHHH
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLD-----------ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRS--GHQE 596 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~ 596 (784)
...|...|++++|...|+++.+.. |+ ...+..+...+...|++++|+..++++.+.. |. +..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 215 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--GDMIDPDL 215 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS--CSSCCHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cCccCHHH
Confidence 999999999999999999998752 32 2234455788889999999999999999876 55 7889
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGY 675 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~ 675 (784)
+..+...+...|++++|.+.|+...+..+ .+..+|+.+..+|...|++++|++.|++..+. .| +..+|..+...|
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRP--EDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 99999999999999999999999988653 35778999999999999999999999999885 45 488899999999
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSM-------NFDEELLDSVLYTFVRGGFFARANEVVAM 730 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~-------~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 730 (784)
...| ++++|...++++.+..++..- ..+...|..+..++...|+.+.+.++.++
T Consensus 292 ~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLG-AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHT-CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCC-CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999 999999999998875433211 11367899999999999999998887765
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=4.7e-15 Score=156.53 Aligned_cols=98 Identities=6% Similarity=-0.139 Sum_probs=57.4
Q ss_pred chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 252 NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 252 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+..+.... +|..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLK----ALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH----HHHH
Confidence 34456666666666666666666666666543 234455666666666666666666666666554333322 4666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
+...|.+.|++++|...|+++.+
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHH
Confidence 66666666666666666665554
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=4.3e-13 Score=149.14 Aligned_cols=415 Identities=11% Similarity=0.058 Sum_probs=259.3
Q ss_pred ccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccc
Q 003946 164 EKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCN 243 (784)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~ 243 (784)
+...+..++. +.+.|+++.|..+|+++.+.- +-+...|..++..+.+. |.+++|..+|+ +..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~--------~~~~~a~~~~~--ral------ 73 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKA--------KNYDKVEKLFQ--RCL------ 73 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT--------TCHHHHHHHHH--HHT------
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhc--------CCHHHHHHHHH--HHH------
Confidence 5556666776 467888999999999988752 23556788888777665 77888888888 653
Q ss_pred ccccCCCCchhhHHHHHHHh-hhcCChhHHHH----HHHhhhh-CCCCCC-hhHHHHHHHHHHh---------cCCHHHH
Q 003946 244 APLIAMKPNTNTFNIALAGC-LLFETTRKAEQ----LLDIMPR-IGVKAD-SNLLIIMAHIYER---------NGRREEL 307 (784)
Q Consensus 244 ~~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~~----l~~~m~~-~g~~pd-~~~~~~li~~~~~---------~g~~~~A 307 (784)
...|+...|...+... ...|++++|.+ +|+...+ .|..|+ ...|...+....+ .|+++.|
T Consensus 74 ----~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 74 ----MKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp ----TTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred ----hcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 2356766776666433 34577777665 6666554 355553 4667777766654 6889999
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHH-------------hcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhc
Q 003946 308 RKLQRHIDEAVNLSDIQFRQFYNCLLSCHL-------------KFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVG 374 (784)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 374 (784)
.++|+...+. +..... .+|.......- +.++++.|..++..+..... +
T Consensus 150 ~~~y~~al~~-P~~~~~--~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~--------~-------- 210 (530)
T 2ooe_A 150 RRVYQRGCVN-PMINIE--QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMK--------G-------- 210 (530)
T ss_dssp HHHHHHHTTS-CCTTHH--HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH--------H--------
T ss_pred HHHHHHHHhc-hhhhHH--HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------H--------
Confidence 9999998873 221111 13443332111 12223333333332221000 0
Q ss_pred cCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCC----
Q 003946 375 VNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPT---- 450 (784)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---- 450 (784)
++.....+.|+
T Consensus 211 -----------------------------------------------------------------l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 211 -----------------------------------------------------------------LDRNAPSVPPQNTPQ 225 (530)
T ss_dssp -----------------------------------------------------------------CCSSSCCCCCC--CC
T ss_pred -----------------------------------------------------------------hccccccCCCCCChh
Confidence 00000001222
Q ss_pred ----HHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-------cCCHH------
Q 003946 451 ----EKIYIKLVKAFLEA----GKT----KELTHFLIKAEKENLQVSHDDAALGHVITLCIS-------LGWLD------ 505 (784)
Q Consensus 451 ----~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~-------~g~~~------ 505 (784)
...|...+...... ++. ++|..+|++..... +-+...|......+.+ .|+++
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 24555555333222 222 36778888887764 5567778877777775 68876
Q ss_pred -HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHH
Q 003946 506 -QAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLD--ASCYEALLQSKIVQKDTPGALHLFK 582 (784)
Q Consensus 506 -~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~ 582 (784)
+|..+|+...+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|+
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88888888876323346888888888888889999999999988875 443 2478888888888888888888888
Q ss_pred HhHhcCCCCCcHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 003946 583 EMKESKIPRSGHQEFEMLVKG-CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLG- 660 (784)
Q Consensus 583 ~m~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g- 660 (784)
+..+.. |.....|...... +...|+.++|..+|+...+..+ .+...|..++..+.+.|+.++|..+|++....+
T Consensus 381 ~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 887653 3333333322222 2356777777777777766442 245667777777777777777777777777653
Q ss_pred CCCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 661 HLPN--AQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 661 ~~p~--~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
..|+ ...|...+.-....| +.+.+..+.+++.+
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G-~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIG-DLASILKVEKRRFT 491 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSS-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 1222 346666666666667 77777777777665
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=1.5e-12 Score=143.20 Aligned_cols=319 Identities=11% Similarity=-0.013 Sum_probs=255.4
Q ss_pred chhhHHHHHHHhhh----cCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCChh
Q 003946 252 NTNTFNIALAGCLL----FETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER----NGRREELRKLQRHIDEAVNLSDI 323 (784)
Q Consensus 252 ~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~ 323 (784)
+...+..+-..|.. .+++++|+..|+...+.| +...+..|...|.. .+++++|.+.|+...+.+.+ .
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~ 148 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRD--S 148 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--H
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH--H
Confidence 34455556666666 788999999999888765 56677778888888 78999999999988775432 2
Q ss_pred hHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccc
Q 003946 324 QFRQFYNCLLSCHLK----FGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGII 399 (784)
Q Consensus 324 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (784)
.+..|...|.. .++.++|.+.|++..+.
T Consensus 149 ----a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------------------------------------------- 180 (490)
T 2xm6_A 149 ----GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------------------------------------------- 180 (490)
T ss_dssp ----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------------------------------------
T ss_pred ----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------------------------------------------
Confidence 47778888877 78899999999877652
Q ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 003946 400 ENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLE----AGKTKELTHFLI 475 (784)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~ 475 (784)
.+...+..+...|.. .+++++|...|.
T Consensus 181 -------------------------------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 181 -------------------------------------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp -------------------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred -------------------------------------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 234566677777777 789999999999
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 003946 476 KAEKENLQVSHDDAALGHVITLCIS----LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE----ANRPREVTALLR 547 (784)
Q Consensus 476 ~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 547 (784)
+..+.+ +...+..+...|.. .+++++|...|+...+.| +...+..+...|.. .++.++|...|+
T Consensus 212 ~a~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 212 KSATSG-----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 988766 34557777777776 789999999999988875 56777788888888 899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC---cHHHHHHHHHH
Q 003946 548 DARSAGIQLDASCYEALLQSKIVQ-----KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH---EAGLMAKLLQE 619 (784)
Q Consensus 548 ~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~ 619 (784)
+..+.| +...+..+-..|... ++.++|+..|++..+.+ +...+..+...|...| +.++|.++|+.
T Consensus 284 ~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 284 KSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 988754 566777777888877 89999999999998865 2457777888887766 78999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHH
Q 003946 620 VKEGQRIDCGVHDWNNVIHFFCK----KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA----IGGKYTEVTELWGE 691 (784)
Q Consensus 620 ~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~~a~~~~~~ 691 (784)
..+.+ +...+..|...|.. .+++++|.+.|++..+.| +...+..|-..|.. .+ +.++|...|++
T Consensus 357 a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~ 428 (490)
T 2xm6_A 357 AAAKG----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVER-DYVQAWAWFDT 428 (490)
T ss_dssp HHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHH
T ss_pred HHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHH
Confidence 88763 67788999999988 899999999999999875 57778888888887 78 99999999999
Q ss_pred HHhc
Q 003946 692 MKSF 695 (784)
Q Consensus 692 m~~~ 695 (784)
..+.
T Consensus 429 A~~~ 432 (490)
T 2xm6_A 429 ASTN 432 (490)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 8873
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=2.8e-15 Score=154.95 Aligned_cols=280 Identities=12% Similarity=0.075 Sum_probs=134.7
Q ss_pred HHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhc
Q 003946 222 ELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERN 301 (784)
Q Consensus 222 ~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 301 (784)
|++++|.+.++ ++. .| .+|..+..++.+.|++++|++.|.. .+|..+|..++..+...
T Consensus 17 ~~ld~A~~fae--~~~------------~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 17 GNLDRAYEFAE--RCN------------EP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHH--hCC------------Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhC
Confidence 77899999998 652 33 3899999999999999999999964 36888999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCC
Q 003946 302 GRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPS 381 (784)
Q Consensus 302 g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (784)
|++++|.+.++...+. .++.. +.+.|+.+|.+.|+++++.++++
T Consensus 75 g~~EeAi~yl~~ark~-~~~~~----i~~~Li~~Y~Klg~l~e~e~f~~------------------------------- 118 (449)
T 1b89_A 75 GNWEELVKYLQMARKK-ARESY----VETELIFALAKTNRLAELEEFIN------------------------------- 118 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT-------------------------------
T ss_pred CCHHHHHHHHHHHHHh-Cccch----hHHHHHHHHHHhCCHHHHHHHHc-------------------------------
Confidence 9999999977776664 33322 68999999999999998887652
Q ss_pred CccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHH
Q 003946 382 EQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAF 461 (784)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 461 (784)
.|+..+|+.+...|
T Consensus 119 ------------------------------------------------------------------~pn~~a~~~IGd~~ 132 (449)
T 1b89_A 119 ------------------------------------------------------------------GPNNAHIQQVGDRC 132 (449)
T ss_dssp ------------------------------------------------------------------CC------------
T ss_pred ------------------------------------------------------------------CCcHHHHHHHHHHH
Confidence 45667999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPRE 541 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 541 (784)
...|.+++|...|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.
T Consensus 133 ~~~g~yeeA~~~Y~~a-----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 133 YDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp ----CTTTHHHHHHHT-----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHh-----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHH
Confidence 9999999999999976 13889999999999999999999988 278999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc--CcHHHHHHHHHH
Q 003946 542 VTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN--HEAGLMAKLLQE 619 (784)
Q Consensus 542 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~ 619 (784)
|......+. .++.-...++..|.+.|.+++|+.+++...... +.....|+-+.-.|++- +++.+..++|.
T Consensus 196 A~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~- 267 (449)
T 1b89_A 196 AQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFW- 267 (449)
T ss_dssp HHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS-
T ss_pred HHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-
Confidence 966655432 344445579999999999999999999887544 55567788887777765 34555555543
Q ss_pred HHhcCCCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 003946 620 VKEGQRIDC------GVHDWNNVIHFFCKKRLMQDAEKA 652 (784)
Q Consensus 620 ~~~~~~~~p------~~~~y~~li~~~~~~g~~~~A~~~ 652 (784)
.+-.+.| +...|.-++..|...++++.|...
T Consensus 268 --~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 268 --SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp --TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 2222222 456799999999999999998873
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=2e-12 Score=143.66 Aligned_cols=424 Identities=11% Similarity=0.038 Sum_probs=276.0
Q ss_pred cccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCc-hhHHHHHHHHHhccChhhHHHHHHHHHHHHHhccccc
Q 003946 84 LVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRK-TLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQIL 162 (784)
Q Consensus 84 ~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 162 (784)
...|.+...|..++. +...|++++|..+|+++.+.. |+. ..+...+..+.+.|+ .++|..++++++.. .
T Consensus 7 ~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~---~~~a~~~~~ral~~----~ 76 (530)
T 2ooe_A 7 EENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKN---YDKVEKLFQRCLMK----V 76 (530)
T ss_dssp HHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTT----C
T ss_pred hhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhc----C
Confidence 345678889999888 477899999999999988843 544 455666666666543 45577777777665 2
Q ss_pred CccchHHHHHH-HHhhCCCCccHHH----HHHHHhhc-CCCC-ChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCC
Q 003946 163 LEKEPLIYLSL-GLSKCGLPVPAST----ILRKLVAT-EQYP-PVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGR 235 (784)
Q Consensus 163 ~~~~~~~~li~-~~~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 235 (784)
|+++.+...+. .....|+++.|.+ +|++..+. |..| +...|...+....+
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~----------------------- 133 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKG----------------------- 133 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH-----------------------
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhc-----------------------
Confidence 34444444443 2335677777765 55554432 3333 23344433321111
Q ss_pred cCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHH-------------HhcC
Q 003946 236 VDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIY-------------ERNG 302 (784)
Q Consensus 236 m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~-------------~~~g 302 (784)
. .+. . .+.+.|+++.|..+|+..++....+....|....... .+.+
T Consensus 134 ~----------~~~----~-------~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~ 192 (530)
T 2ooe_A 134 V----------EAV----G-------SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSR 192 (530)
T ss_dssp S----------CCC----S-------STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred C----------CCc----c-------cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhH
Confidence 0 000 0 1234678889999999888731111123333222211 1234
Q ss_pred CHHHHHHHHHHHHh------hc----CCChh----hHHHHHHHHHHHHHhc----CCh----hHHHHHHHHHHHHHHHHH
Q 003946 303 RREELRKLQRHIDE------AV----NLSDI----QFRQFYNCLLSCHLKF----GDL----NSASKMVLEMLQRAKEAR 360 (784)
Q Consensus 303 ~~~~A~~l~~~~~~------~~----~~~~~----~~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~ 360 (784)
+++.|..++..+.. .. +|... .....|...+..-... ++. ++|..+|++....
T Consensus 193 ~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~----- 267 (530)
T 2ooe_A 193 DYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV----- 267 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-----
Confidence 56667766665321 10 11100 0011344444322221 111 2344444444432
Q ss_pred HHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003946 361 NSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELI 440 (784)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (784)
T Consensus 268 -------------------------------------------------------------------------------- 267 (530)
T 2ooe_A 268 -------------------------------------------------------------------------------- 267 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCcCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003946 441 TTEHGILQPTEKIYIKLVKAFLE-------AGKTK-------ELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQ 506 (784)
Q Consensus 441 ~~~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 506 (784)
.+-+...|......+.+ .|+++ +|..+|++..+.- .+.+...|..++..+.+.|++++
T Consensus 268 ------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 268 ------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp ------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--CSSCHHHHHHHHHHHHHTTCHHH
T ss_pred ------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHhcCCHHH
Confidence 13356788888887775 68887 8999999988632 14567889999999999999999
Q ss_pred HHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCChhHHHHHHHH
Q 003946 507 AHDLLDEMHLAGVRAS--SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS-KIVQKDTPGALHLFKE 583 (784)
Q Consensus 507 a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~ 583 (784)
|..+|+.+.+. .|+ ...|..++..+.+.|++++|..+|++..+... .+...|...... +...|+.++|..+|++
T Consensus 340 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 340 VHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 99999999985 343 35899999999999999999999999987531 223333322222 3368999999999999
Q ss_pred hHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 584 MKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 584 m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
..+.. |.+...+..++..+.+.|+.++|..+|+......+..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 417 al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 417 GLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88765 777889999999999999999999999999987554443 557989899999999999999999998874
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=9.5e-15 Score=151.00 Aligned_cols=280 Identities=12% Similarity=0.099 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhH
Q 003946 142 KWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAA 221 (784)
Q Consensus 142 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 221 (784)
+.+++|.+.++++ .+|++|..|..++.+.|++++|.+.|.+. +|..+|..++.++...
T Consensus 17 ~~ld~A~~fae~~--------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~-------- 74 (449)
T 1b89_A 17 GNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS-------- 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC--------
Confidence 3455677777764 35668888888888999999998888653 4777888888877664
Q ss_pred HHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhc
Q 003946 222 ELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERN 301 (784)
Q Consensus 222 ~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 301 (784)
|++++|...++ ...+ ..++..+.+.++.+|++.|+++++.++++ .|+..+|..+++.|...
T Consensus 75 g~~EeAi~yl~--~ark----------~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~ 135 (449)
T 1b89_A 75 GNWEELVKYLQ--MARK----------KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDE 135 (449)
T ss_dssp ----------------------------------------------CHHHHTTTTT-------CC---------------
T ss_pred CCHHHHHHHHH--HHHH----------hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHc
Confidence 88888888666 4421 24556778888888999999888887774 36777888899999999
Q ss_pred CCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCC
Q 003946 302 GRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPS 381 (784)
Q Consensus 302 g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (784)
|.+++|...|..+. .|..|++++++.|++++|.+.+.++.
T Consensus 136 g~yeeA~~~Y~~a~------------n~~~LA~~L~~Lg~yq~AVea~~KA~---------------------------- 175 (449)
T 1b89_A 136 KMYDAAKLLYNNVS------------NFGRLASTLVHLGEYQAAVDGARKAN---------------------------- 175 (449)
T ss_dssp -CTTTHHHHHHHTT------------CHHHHHHHHHTTTCHHHHHHHHHHHT----------------------------
T ss_pred CCHHHHHHHHHHhh------------hHHHHHHHHHHhccHHHHHHHHHHcC----------------------------
Confidence 99999999888762 28899999999999999888887552
Q ss_pred CccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHH
Q 003946 382 EQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAF 461 (784)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 461 (784)
++.+|..++.+|
T Consensus 176 --------------------------------------------------------------------~~~~Wk~v~~aC 187 (449)
T 1b89_A 176 --------------------------------------------------------------------STRTWKEVCFAC 187 (449)
T ss_dssp --------------------------------------------------------------------CHHHHHHHHHHH
T ss_pred --------------------------------------------------------------------CchhHHHHHHHH
Confidence 236888899999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCh
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA--NRP 539 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~ 539 (784)
...|+++.|......+ ...+.-...++..|.+.|.+++|..+++...... +.....|+-|.-+|++- +++
T Consensus 188 v~~~ef~lA~~~~l~L-------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~ 259 (449)
T 1b89_A 188 VDGKEFRLAQMCGLHI-------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 259 (449)
T ss_dssp HHTTCHHHHHHTTTTT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCcHHHHHHHHHHH-------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999885544432 2333335568888889999999999888887655 45677888887777765 344
Q ss_pred HHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCChhHHHHH
Q 003946 540 REVTALLRDARSAGIQL------DASCYEALLQSKIVQKDTPGALHL 580 (784)
Q Consensus 540 ~~A~~~~~~m~~~g~~p------~~~t~~~li~~~~~~g~~~~A~~~ 580 (784)
.+.+++|..- .+++| +...|.-+...|.+.++++.|...
T Consensus 260 ~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 260 REHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 5555554421 11222 345688888888888888887664
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=4.5e-14 Score=146.19 Aligned_cols=270 Identities=11% Similarity=-0.036 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...|+.+.+.. +.+..++..+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 3456778888999999999999999999876 5678889999999999999999999999999874 34788999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHH--------------HH-HHHHcCChhHHHHHHHHhHhcCCCCCcH
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQLDA-SCYEAL--------------LQ-SKIVQKDTPGALHLFKEMKESKIPRSGH 594 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 594 (784)
..|...|++++|...++++.+.. |+. ..+..+ .. .+...|++++|+..++++.+.. |.+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 172 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDA 172 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCH
Confidence 99999999999999999998763 332 222222 22 2677889999999999998875 6678
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003946 595 QEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTG 674 (784)
Q Consensus 595 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 674 (784)
..+..+...+...|++++|.+.++.+.+..+ .+...|..+...|...|++++|.+.+++..+.. +.+..+|..+...
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRP--DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 8999999999999999999999999988653 356789999999999999999999999998852 3357889999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhcccCCCCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 675 YAAIGGKYTEVTELWGEMKSFASSTSMNF-------DEELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 675 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
+...| ++++|...++++.+..+...... +...|..+...|.+.|++++|.+++++..
T Consensus 250 ~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 250 YSNMS-QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHhc-cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999 99999999999887432211111 46789999999999999999999987543
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=4.7e-14 Score=146.05 Aligned_cols=153 Identities=15% Similarity=0.020 Sum_probs=72.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 003946 498 CISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGA 577 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 577 (784)
+...|++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+.. +.+..+|..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 334455555555555555443 2244555555555555555555555555554432 12344555555555555555555
Q ss_pred HHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC----------CCHHHHHHHHHHHHhcCCHH
Q 003946 578 LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRID----------CGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 578 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------p~~~~y~~li~~~~~~g~~~ 647 (784)
+..++++.+.. |.+...+..+...+...|++++|.+.|+......+.. .+...|..+..+|.+.|+.+
T Consensus 226 ~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 226 LDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 55555554432 3333344444444444444444444444333321100 01344555555555555555
Q ss_pred HHHHHHH
Q 003946 648 DAEKALK 654 (784)
Q Consensus 648 ~A~~~~~ 654 (784)
+|..+++
T Consensus 304 ~A~~~~~ 310 (327)
T 3cv0_A 304 LVELTYA 310 (327)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 5555544
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=1e-13 Score=140.37 Aligned_cols=260 Identities=10% Similarity=0.043 Sum_probs=199.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDD--AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA 536 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 536 (784)
.-....|++.+|+..++..... .|+. .....+..+|...|+++.|...++. .-+|+..++..+...|...
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~----~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS----SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC----SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhcccC----CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 4455778999998888765432 3443 2445567899999999998876654 2356778888888999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHH
Q 003946 537 NRPREVTALLRDARSAGIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAK 615 (784)
Q Consensus 537 g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 615 (784)
|+.++|.+.++++...+..|+ ...+..+...+...|++++|++.+++ |++...+..+...+.+.|++++|.+
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999987765564 55566666888899999999999886 5667888899999999999999999
Q ss_pred HHHHHHhcCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 616 LLQEVKEGQRIDCGVHD---WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 616 ~~~~~~~~~~~~p~~~~---y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
.|+.+.+.. |+... ....+..+...|++++|..+|+++.+. .+.+...|+.+..++...| ++++|...+++.
T Consensus 152 ~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g-~~~eA~~~l~~a 226 (291)
T 3mkr_A 152 ELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQG-RWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 999998764 44321 123344455568899999999999886 4457888888999999999 999999999998
Q ss_pred HhcccCCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhCCCCCCHHHHHH
Q 003946 693 KSFASSTSMNFDEELLDSVLYTFVRGGFFAR-ANEVVAMMEEGKMFIDKYKYRT 745 (784)
Q Consensus 693 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~pd~~~~~~ 745 (784)
.+.. +-++.++..++..+...|+.++ +.++++++.+ +.|+......
T Consensus 227 l~~~-----p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d 273 (291)
T 3mkr_A 227 LDKD-----SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKE 273 (291)
T ss_dssp HHHC-----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHhC-----CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHH
Confidence 7732 2367888889999999999876 5788888887 3566654443
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.7e-12 Score=140.43 Aligned_cols=364 Identities=10% Similarity=0.008 Sum_probs=217.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 003946 286 ADSNLLIIMAHIYERNGRREELRKLQRHIDEA-----VNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEAR 360 (784)
Q Consensus 286 pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 360 (784)
.....|+.|...+...|++++|.+.|++..+. .........++|+.+..+|...|++++|...+++..+....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~-- 126 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK-- 126 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh--
Confidence 34577999999999999999999999886542 11111112237999999999999999999999988764320
Q ss_pred HHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003946 361 NSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELI 440 (784)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (784)
.
T Consensus 127 ------------~------------------------------------------------------------------- 127 (472)
T 4g1t_A 127 ------------F------------------------------------------------------------------- 127 (472)
T ss_dssp ------------S-------------------------------------------------------------------
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred hhhcCCcCC-CHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHH
Q 003946 441 TTEHGILQP-TEKIYIKLVKAFLEA--GKTKELTHFLIKAEKENLQVSHDDAALGHVITL---CISLGWLDQAHDLLDEM 514 (784)
Q Consensus 441 ~~~~~~~~p-~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m 514 (784)
.....+ ...+++.+..++... +++++|...|++..+.. +-+...+..+..+ +...++.++|.+.+++.
T Consensus 128 ---~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~---p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 128 ---SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK---PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp ---CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred ---ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 000111 234555555555544 35778888888877665 3344444444433 33456667777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCC
Q 003946 515 HLAGVRASSSVYASLLKAYIEA----NRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIP 590 (784)
Q Consensus 515 ~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 590 (784)
.+.. +.+..++..+...+... |+.++|..++++..... +.+...+..+...|...|++++|+..+++..+..
T Consensus 202 l~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 277 (472)
T 4g1t_A 202 IRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-- 277 (472)
T ss_dssp HHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred hhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--
Confidence 7654 23555665555555443 56677888888776654 3456677778888888888888888888877754
Q ss_pred CCcHHHHHHHHHHHHhc-------------------CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003946 591 RSGHQEFEMLVKGCAQN-------------------HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEK 651 (784)
Q Consensus 591 ~~~~~~~~~ll~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 651 (784)
|.+..++..+...|... +..+.|...++...+..+. +...|..+...|...|++++|++
T Consensus 278 p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 278 PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN--LFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT--TCCCHHHHHHHHHHTTCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc--hhhhhhhHHHHHHHhccHHHHHH
Confidence 66666776666555332 2356677777777765543 33457778888888888888888
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHH-HHHHcCCCHHHHHHHHHHHHhcccCC-------------------CCCCCHHHHH
Q 003946 652 ALKRMRSLGHLPNAQ--TFHSMVT-GYAAIGGKYTEVTELWGEMKSFASST-------------------SMNFDEELLD 709 (784)
Q Consensus 652 ~~~~m~~~g~~p~~~--~~~~ll~-a~~~~g~~~~~a~~~~~~m~~~~~~~-------------------~~~p~~~~~~ 709 (784)
.|++..+....|... .+..+.. .....| ++++|+..+++..+..++. .-+.+..+|.
T Consensus 356 ~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMK-CEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 888888753322211 1222222 223456 8888888887766532110 0122456777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHH
Q 003946 710 SVLYTFVRGGFFARANEVVAMMEEGK-MFIDKYKY 743 (784)
Q Consensus 710 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~ 743 (784)
.|...|...|++++|.+.|++..+.| ..|+..+|
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 88888888888888888888877653 23544443
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.57 E-value=8.4e-13 Score=133.70 Aligned_cols=251 Identities=7% Similarity=0.052 Sum_probs=152.0
Q ss_pred HhhhcCChhHHHHHHHhhhhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhc
Q 003946 262 GCLLFETTRKAEQLLDIMPRIGVKADS--NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKF 339 (784)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 339 (784)
-....|++..|+..++..... .|+. .....+..+|...|+++.|...++. ...+.. ..+..+...|...
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~----~a~~~la~~~~~~ 78 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPEL----QAVRMFAEYLASH 78 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHH----HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhH----HHHHHHHHHHcCC
Confidence 344567777777777665442 3443 3445566777777777777664433 122211 2466677777777
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHH
Q 003946 340 GDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALE 419 (784)
Q Consensus 340 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (784)
|+.++|++.++++...+
T Consensus 79 ~~~~~A~~~l~~ll~~~--------------------------------------------------------------- 95 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRS--------------------------------------------------------------- 95 (291)
T ss_dssp TTHHHHHHHHHHHHHSC---------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHhcc---------------------------------------------------------------
Confidence 77777777777766521
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 003946 420 AEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLC 498 (784)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 498 (784)
..| +...+..+...+.+.|++++|++.+++ +.+...+..+...+
T Consensus 96 ---------------------------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 96 ---------------------------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQIL 140 (291)
T ss_dssp ---------------------------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHH
T ss_pred ---------------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 123 344555566677777777777777765 13455566677777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 003946 499 ISLGWLDQAHDLLDEMHLAGVRASSSV---YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTP 575 (784)
Q Consensus 499 ~~~g~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 575 (784)
.+.|++++|.+.|+.+.+.. |+... ...++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|+++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777653 33211 1122333334466777777777776653 346666777777777777777
Q ss_pred HHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHH-HHHHHHHHHhcC
Q 003946 576 GALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGL-MAKLLQEVKEGQ 624 (784)
Q Consensus 576 ~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~ 624 (784)
+|...|++..+.. |.+..++..++..+...|+.++ +.++++.+.+..
T Consensus 218 eA~~~l~~al~~~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 218 AAEGVLQEALDKD--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 7777777766654 5666666666666666666644 456666666544
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=9.9e-12 Score=135.97 Aligned_cols=366 Identities=12% Similarity=0.006 Sum_probs=182.5
Q ss_pred CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhC-----C--CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 003946 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRI-----G--VKAD-SNLLIIMAHIYERNGRREELRKLQRHIDEA---- 317 (784)
Q Consensus 250 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-----g--~~pd-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---- 317 (784)
......||.+-..+...|++++|++.|++..+. + ..|+ ..+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567999999999999999999999876532 1 1233 468999999999999999999999887653
Q ss_pred cC---CChhhHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHH---HHHHHHHHhchhhhhhccCCCCCCCccccCCC
Q 003946 318 VN---LSDIQFRQFYNCLLSCHLKFG--DLNSASKMVLEMLQRAK---EARNSLAAAMLPFNAVGVNNRTPSEQNVNCTN 389 (784)
Q Consensus 318 ~~---~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (784)
.. +.... +++.+..++.+.| ++++|++.|++..+.+. ..+..+..+....+....
T Consensus 128 ~~~~~~~~~~---~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~-------------- 190 (472)
T 4g1t_A 128 SSPYRIESPE---LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP-------------- 190 (472)
T ss_dssp CCSSCCCCHH---HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC--------------
T ss_pred ccccchhhHH---HHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH--------------
Confidence 11 11121 5666666666654 68999999998877431 000000000000000000
Q ss_pred CccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHc----
Q 003946 390 SVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEA---- 464 (784)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---- 464 (784)
..........++. ..| +...+..+...+...
T Consensus 191 -------------------------~~~al~~~~~al~-------------------l~p~~~~~~~~l~~~~~~~~~~~ 226 (472)
T 4g1t_A 191 -------------------------SQNAIDPLRQAIR-------------------LNPDNQYLKVLLALKLHKMREEG 226 (472)
T ss_dssp -------------------------CCCTHHHHHHHHH-------------------HCSSCHHHHHHHHHHHHHCC---
T ss_pred -------------------------HHHHHHHHHHHhh-------------------cCCcchHHHHHHHHHHHHHHhhh
Confidence 0000000000000 122 444454444444433
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------
Q 003946 465 GKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA-------- 536 (784)
Q Consensus 465 g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-------- 536 (784)
+++++|.+.+++..... +.+..++..+...|...|++++|...|++..+.. +-+..++..+...|...
T Consensus 227 ~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp ---CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHH
Confidence 34455666666655544 4445555556666666666666666666655543 22444555555544322
Q ss_pred -----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHH-HHHHHHH-H
Q 003946 537 -----------NRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQ-EFEMLVK-G 603 (784)
Q Consensus 537 -----------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~ll~-~ 603 (784)
+..++|...|++..+.. ..+..++..+...|...|++++|+..|++..+....+.... .+..+.. .
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 12344455555544432 12334455555555556666666666655554432111110 1111111 1
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHH
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYT 683 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 683 (784)
..+.|+.++|...|++..+. .|+....... .+.+.+++++..+. -+.+..+|..+...|...| +++
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~---------~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g-~~~ 447 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKI---NQKSREKEKM---------KDKLQKIAKMRLSK-NGADSEALHVLAFLQELNE-KMQ 447 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH---------HHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHH-HCC
T ss_pred HHHCCCHHHHHHHHHHHHhc---CcccHHHHHH---------HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-CHH
Confidence 23445555666555555542 2333221111 12233334333332 1235678899999999999 999
Q ss_pred HHHHHHHHHHhc
Q 003946 684 EVTELWGEMKSF 695 (784)
Q Consensus 684 ~a~~~~~~m~~~ 695 (784)
+|.+.|++..+.
T Consensus 448 ~A~~~y~kALe~ 459 (472)
T 4g1t_A 448 QADEDSERGLES 459 (472)
T ss_dssp ------------
T ss_pred HHHHHHHHHHhc
Confidence 999999998874
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.2e-11 Score=122.81 Aligned_cols=224 Identities=13% Similarity=0.062 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV--RAS----SSV 525 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~ 525 (784)
..|..+...+...|++++|...|.+..+.. .+..++..+...+...|++++|...++...+... .++ ..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 456666667777777777777777766553 3445566667777777777777777776665321 111 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
+..+...|.+.|++++|...|++..+. .|+. ..+...|++++|+..++++.... |.+...+..+...+.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHH
Confidence 666667777777777777777776654 3442 23444456666666666665543 444445555555555
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHH
Q 003946 606 QNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEV 685 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a 685 (784)
..|++++|...|+...+..+ .+...|..+...|...|++++|.+.+++..+.. +.+...|..+...+...| ++++|
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g-~~~~A 226 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK-EYASA 226 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh-hHHHH
Confidence 55555555555555554332 134445555555555555555555555555431 113444555555555555 55555
Q ss_pred HHHHHHHHh
Q 003946 686 TELWGEMKS 694 (784)
Q Consensus 686 ~~~~~~m~~ 694 (784)
...+++..+
T Consensus 227 ~~~~~~a~~ 235 (258)
T 3uq3_A 227 LETLDAART 235 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.6e-11 Score=121.83 Aligned_cols=239 Identities=10% Similarity=-0.024 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCC----HHHH
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGI--QLD----ASCY 561 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~ 561 (784)
...+..+...+...|++++|..+|++..+.. .+..++..+...|...|++++|...+++..+... .++ ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467788899999999999999999999887 7889999999999999999999999999876421 122 5789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003946 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 641 (784)
..+...+...|++++|+..|++..+.. |. ...+.+.|++++|.+.++.+....+ .+...|..+...|.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~--------~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT--------ADILTKLRNAEKELKKAEAEAYVNP--EKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC--------HHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch--------hHHHHHHhHHHHHHHHHHHHHHcCc--chHHHHHHHHHHHH
Confidence 999999999999999999999998864 33 2456777899999999999988542 24567899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCh
Q 003946 642 KKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFF 721 (784)
Q Consensus 642 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 721 (784)
..|++++|.+.+++..+.. +.+..+|..+...|...| ++++|...+++..+.. +.+...|..+...|.+.|++
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLM-SFPEAIADCNKAIEKD-----PNFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999998853 336888999999999999 9999999999998732 23588899999999999999
Q ss_pred HHHHHHHHHHHhCC----CCCCHHHHHHHH
Q 003946 722 ARANEVVAMMEEGK----MFIDKYKYRTLF 747 (784)
Q Consensus 722 ~~A~~l~~~m~~~g----~~pd~~~~~~li 747 (784)
++|.+.+++..+.. ..|+......++
T Consensus 224 ~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 224 ASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 99999999988642 126665555444
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=9e-12 Score=120.25 Aligned_cols=199 Identities=13% Similarity=0.019 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHH
Q 003946 521 ASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEML 600 (784)
Q Consensus 521 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 600 (784)
++...+..+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|+..+++..+.. |.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 344455555555666666666666666655442 2244555555556666666666666666655543 5555566666
Q ss_pred HHHHHhc-----------CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 601 VKGCAQN-----------HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 601 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
...+... |++++|...|+...+.++- +...|..+...|...|++++|+..|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 6666666 7777777777776664421 45567777777788888888888888777765 6677777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 670 SMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 670 ~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
.+..+|...| ++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..
T Consensus 156 ~la~~~~~~g-~~~~A~~~~~~al~~~-----P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMG-RLDEALAQYAKALEQA-----PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777 8888888888776631 2256677777777888888888877776543
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=3.4e-11 Score=119.26 Aligned_cols=201 Identities=14% Similarity=0.041 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 4678888888999999999999999988776 5577788888888999999999999999888764 33677888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..|...|++++|..+|+++.+.+..| +...+..+...+...|++++|+..+++..+.. |.+...+..+...+...|+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCC
Confidence 88888899999999888887633344 45667777788888888888888888877754 5556677777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
+++|...++.+.+..+ .+...+..+...|...|+.++|.+.++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGG--QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777777766432 34556667777777777777777777777664
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.44 E-value=1.8e-11 Score=118.19 Aligned_cols=200 Identities=16% Similarity=0.081 Sum_probs=144.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 003946 285 KADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLA 364 (784)
Q Consensus 285 ~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 364 (784)
+++...+..+...+.+.|++++|...|+...+.++.+.. .|..+...+.+.|++++|+..|++..+.+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------- 69 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE----ALYWLARTQLKLGLVNPALENGKTLVART-------- 69 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence 456667777888888888888888888888776555544 58888888888888888888888777631
Q ss_pred HhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q 003946 365 AAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEH 444 (784)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (784)
T Consensus 70 -------------------------------------------------------------------------------- 69 (217)
T 2pl2_A 70 -------------------------------------------------------------------------------- 69 (217)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003946 445 GILQPTEKIYIKLVKAFLEA-----------GKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDE 513 (784)
Q Consensus 445 ~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 513 (784)
+.+...|..+...+... |++++|...|++..+.. +-+...+..+...+...|++++|...|++
T Consensus 70 ---P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 70 ---PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 22456677777777777 88999999998888776 55677788888888889999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003946 514 MHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMK 585 (784)
Q Consensus 514 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 585 (784)
..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...|+.++|+..|++..
T Consensus 144 al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 144 ALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88877 678888888888888899999988888887763 2356777888888888888888888887654
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=5.4e-11 Score=117.79 Aligned_cols=200 Identities=12% Similarity=-0.030 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 489 AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568 (784)
Q Consensus 489 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 568 (784)
..+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.. ..+...|..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445555555556666666666666655543 2245555555555666666666666665555442 12444555555555
Q ss_pred HHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003946 569 IVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQD 648 (784)
Q Consensus 569 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 648 (784)
...|++++|++.++++.+.+..|.+ ...|..+...|...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~------------------------------------~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPER------------------------------------SRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTH------------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCccc------------------------------------HHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555442222322 3445556666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003946 649 AEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVV 728 (784)
Q Consensus 649 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 728 (784)
|.+.+++..+.. ..+...+..+...+...| ++++|...++++.+. .+.+...+..+...+.+.|++++|.+.+
T Consensus 160 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 160 AKEYFEKSLRLN-RNQPSVALEMADLLYKER-EYVPARQYYDLFAQG-----GGQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT-----SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 666666665532 123555666666666666 666666666666541 2234555666666666666666666666
Q ss_pred HHHHh
Q 003946 729 AMMEE 733 (784)
Q Consensus 729 ~~m~~ 733 (784)
+++.+
T Consensus 233 ~~~~~ 237 (252)
T 2ho1_A 233 LQLKR 237 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=7.2e-11 Score=114.33 Aligned_cols=202 Identities=12% Similarity=-0.011 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+...|++++|...|.++.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 45677778888888888888888888887765 4566777778888888888888888888877764 3366777778
Q ss_pred HHHHHHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 530 LKAYIEA-NRPREVTALLRDARSAGIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 530 i~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
...|... |++++|...++++.+.+..|+ ...|..+...+...|++++|+..++++.+.. |.+...+..+...+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHc
Confidence 8888888 888888888888776322333 4567777777777777777777777776654 55556666666666666
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
|++++|...++...+..+ ..+...+..+...+...|+.++|..+++.+.+
T Consensus 161 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVE-VLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666666666655331 02344555666666666666666666666654
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=1.1e-10 Score=113.04 Aligned_cols=211 Identities=12% Similarity=-0.030 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 489 AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568 (784)
Q Consensus 489 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 568 (784)
.++..+...+...|++++|...|+.+.+.. +.+...+..+...|...|++++|...+++..+.. ..+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344445555555555555555555555442 2234455555555555555555555555554432 12344444444455
Q ss_pred HHc-CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 569 IVQ-KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 569 ~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
... |++++|+..++++.+.+..|. +...|..+...|...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPT------------------------------------PYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSC------------------------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcc------------------------------------hHHHHHHHHHHHHHcCCHH
Confidence 555 555555555554444211122 2445666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003946 648 DAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEV 727 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 727 (784)
+|++.++++.+.. +.+...+..+...+...| ++++|...++++.+..+ ..+...+..+...+...|+.++|..+
T Consensus 131 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 131 LAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG-QLGDADYYFKKYQSRVE----VLQADDLLLGWKIAKALGNAQAAYEY 204 (225)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 6666666666531 123556666666666666 77777776666655211 13455566666666666777777666
Q ss_pred HHHHHhCCCCCCHHHHHH
Q 003946 728 VAMMEEGKMFIDKYKYRT 745 (784)
Q Consensus 728 ~~~m~~~g~~pd~~~~~~ 745 (784)
++.+.+. .|+......
T Consensus 205 ~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 205 EAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHHHHHH--CTTCHHHHH
T ss_pred HHHHHHh--CCCCHHHHH
Confidence 6666542 355444433
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=1.7e-11 Score=123.16 Aligned_cols=85 Identities=13% Similarity=0.030 Sum_probs=36.1
Q ss_pred cCChhHHHHHHHhhhhCCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCCh
Q 003946 266 FETTRKAEQLLDIMPRIGVK--A-DSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDL 342 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~g~~--p-d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 342 (784)
.|++++|+..|+.+.+.... | +..++..+...|...|++++|...|+...+..+.... +|..+...|.+.|++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE----VFNYLGIYLTQAGNF 93 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHccCH
Confidence 34455555555554443210 0 1233444444444444444444444444443222222 244444444444444
Q ss_pred hHHHHHHHHHHH
Q 003946 343 NSASKMVLEMLQ 354 (784)
Q Consensus 343 ~~A~~~~~~m~~ 354 (784)
++|.+.|++..+
T Consensus 94 ~~A~~~~~~al~ 105 (275)
T 1xnf_A 94 DAAYEAFDSVLE 105 (275)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444444444433
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=5e-11 Score=117.15 Aligned_cols=98 Identities=14% Similarity=0.000 Sum_probs=40.4
Q ss_pred chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 252 NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 252 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
...+|..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.++.+.+..+.... ++..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~ 96 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAAT----AYYG 96 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH----HHHH
Confidence 34455555555666666666666666665532 223445555555555555555555555555544322222 3555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
+...|.+.|++++|.+.|++..+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.38 E-value=5.6e-11 Score=116.82 Aligned_cols=203 Identities=14% Similarity=0.072 Sum_probs=152.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
......|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+...+.. +.+..++.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp ----------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 3456788888999999999999999999998865 5678888889999999999999999999998874 34788899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
.+...|...|++++|...++++.+.. ..+...+..+...+...|++++|+..++++.+.. |.+...+..+...+...
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHc
Confidence 99999999999999999999998764 3467888889999999999999999999988765 66677888888888888
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
|++++|.+.|+......+ .+..+|..+...|...|++++|.+.+++..+.
T Consensus 173 ~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDP--GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888888888888877543 24667888888888888888888888888774
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=3.8e-11 Score=128.20 Aligned_cols=283 Identities=11% Similarity=-0.019 Sum_probs=218.5
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Q 003946 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD----DAALGHVITLCISLGWLDQAHDLLDEMHLA----G 518 (784)
Q Consensus 447 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g 518 (784)
..+....+......+...|++++|...|++..+.. +.+ ..++..+...+...|++++|...+++..+. +
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence 35567778888899999999999999999998875 334 356778889999999999999999987643 2
Q ss_pred CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC-------------------
Q 003946 519 VRA-SSSVYASLLKAYIEANRPREVTALLRDARSAGI-QLD----ASCYEALLQSKIVQKD------------------- 573 (784)
Q Consensus 519 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~------------------- 573 (784)
-.| ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 111 256788899999999999999999998764310 122 4478888889999999
Q ss_pred -hhHHHHHHHHhHhc----CCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcC
Q 003946 574 -TPGALHLFKEMKES----KIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG----VHDWNNVIHFFCKKR 644 (784)
Q Consensus 574 -~~~A~~~~~~m~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g 644 (784)
+++|+..+++..+. +..+....++..+...+...|++++|.+.++...+...-.++ ..+|..+...|...|
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 99999998876542 222333457888899999999999999999887654322222 347889999999999
Q ss_pred CHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhc
Q 003946 645 LMQDAEKALKRMRSL----GHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRG 718 (784)
Q Consensus 645 ~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~ 718 (784)
++++|...+++..+. +..+. ..++..+...|...| ++++|...+++..+.....+-.+. ..++..+...|...
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 999999999988753 11111 557788888999999 999999999998775433322221 55788999999999
Q ss_pred CChHHHHHHHHHHHh
Q 003946 719 GFFARANEVVAMMEE 733 (784)
Q Consensus 719 g~~~~A~~l~~~m~~ 733 (784)
|++++|.+.+++..+
T Consensus 321 g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.38 E-value=1.2e-10 Score=116.80 Aligned_cols=245 Identities=8% Similarity=-0.063 Sum_probs=157.7
Q ss_pred HHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 003946 256 FNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSC 335 (784)
Q Consensus 256 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~ 335 (784)
+......+.+.|++++|+..|+...+.. +.+...+..+...|.+.|++++|...++...+. ..+......+|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHH
Confidence 3444556667788888888888877653 223346777777788888888888888777763 22211111146777777
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhh
Q 003946 336 HLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKF 415 (784)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (784)
|.+.|++++|.+.|++..+.+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~----------------------------------------------------------- 104 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD----------------------------------------------------------- 104 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-----------------------------------------------------------
T ss_pred HHHcccHHHHHHHHHHHHhcC-----------------------------------------------------------
Confidence 888888888888887776631
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 003946 416 VALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVI 495 (784)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 495 (784)
+.+..+|..+...|...|++++|...|++..+.. +.+..++..+.
T Consensus 105 --------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~ 149 (272)
T 3u4t_A 105 --------------------------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELG 149 (272)
T ss_dssp --------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHH
T ss_pred --------------------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHH
Confidence 2234567777777888888888888887776654 44555566555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHH
Q 003946 496 TLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR---PREVTALLRDARSAG-IQLD------ASCYEALL 565 (784)
Q Consensus 496 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~t~~~li 565 (784)
..+...+++++|...|+...+.. +.+...+..+...+...|+ .++|...+++..+.. -.|+ ...|..+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 24444557888888887777653 2346666677777777777 666777777665431 0122 24566666
Q ss_pred HHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHH
Q 003946 566 QSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEM 599 (784)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 599 (784)
..|...|++++|++.|++..+.. |.+......
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~ 260 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALD--PTNKKAIDG 260 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--ccHHHHHHH
Confidence 67777777777777777776654 555533333
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=3.2e-11 Score=121.10 Aligned_cols=199 Identities=10% Similarity=-0.041 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+...+.. +.+..++..+.
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la 118 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHH
Confidence 3566667777777777777777777776665 4456667777777777777777777777776653 22456666777
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcH
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEA 610 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 610 (784)
..|.+.|++++|...|+++.+. .|+.......+..+...|++++|+..+++..... |++...+. ++..+...++.
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~ 193 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISE 193 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHHH-HHHHHHHhcCH
Confidence 7777777777777777777654 3444344444444455566777777776655543 22222232 44444555555
Q ss_pred HHHHHHHHHHHhcCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 611 GLMAKLLQEVKEGQRI-DC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 611 ~~a~~~~~~~~~~~~~-~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
++|.+.++......+. .| +...|..+...|.+.|++++|...|++..+
T Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5666655555432110 00 134555566666666666666666666655
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=2.5e-10 Score=119.56 Aligned_cols=150 Identities=10% Similarity=0.044 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|+.+..++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|...|+.+++... -+...|+.+
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~l 240 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQR 240 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 33455555555555555555555555555544 34444555555555555555555555555555432 244555555
Q ss_pred HHHHHH-cCChHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 530 LKAYIE-ANRPREV-----TALLRDARSAGIQLDASCYEALLQSKIVQK--DTPGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 530 i~~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
..+|.+ .|..++| +..|++..+.. .-+...|+.+...+...| +.++|++.+.++ + ..|++...+..+.
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La 316 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHH
Confidence 555555 3333444 34455544432 123445555555555544 355555555554 2 2244444555555
Q ss_pred HHHHhc
Q 003946 602 KGCAQN 607 (784)
Q Consensus 602 ~~~~~~ 607 (784)
..|.+.
T Consensus 317 ~~~~~~ 322 (382)
T 2h6f_A 317 DIYEDM 322 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=1.9e-11 Score=131.00 Aligned_cols=279 Identities=13% Similarity=-0.019 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD----AALGHVITLCISLGWLDQAHDLLDEMHLA----G-VRAS 522 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~ 522 (784)
..+..+...+...|++++|...|+++.+.. +.+. .++..+...|...|++++|...|++..+. + ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 455667778899999999999999998876 3343 46888889999999999999999987753 1 1224
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC-----------------hhHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSA----GI-QLDASCYEALLQSKIVQKD-----------------TPGALHL 580 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~li~~~~~~g~-----------------~~~A~~~ 580 (784)
..++..+...|...|++++|...+++..+. +- .....++..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 567888999999999999999999987543 11 1134578888889999999 9999999
Q ss_pred HHHhHhc----CCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 003946 581 FKEMKES----KIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG----VHDWNNVIHFFCKKRLMQDAEKA 652 (784)
Q Consensus 581 ~~~m~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~ 652 (784)
+++..+. +..+....++..+...+...|++++|.+.++...+...-.++ ...|..+...|...|++++|.+.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8876542 222333457888899999999999999999887654321122 33788999999999999999999
Q ss_pred HHHHHhCCCC-C----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 003946 653 LKRMRSLGHL-P----NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANE 726 (784)
Q Consensus 653 ~~~m~~~g~~-p----~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 726 (784)
+++..+..-. . ...++..+...|...| ++++|...+++..+.....+..+ ....+..+...|.+.|++++|.+
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLH-EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9988763110 1 1467778888999999 99999999999876433322111 24578889999999999999999
Q ss_pred HHHHHHhC
Q 003946 727 VVAMMEEG 734 (784)
Q Consensus 727 l~~~m~~~ 734 (784)
.+++..+.
T Consensus 365 ~~~~al~~ 372 (411)
T 4a1s_A 365 YAEQHLQL 372 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=2e-10 Score=120.23 Aligned_cols=249 Identities=11% Similarity=0.018 Sum_probs=204.4
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 253 TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGR-REELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 253 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
...|+.+-..+.+.|++++|+..++..++.. +-+..+|..+..++.+.|+ +++|...|++..+.++.+.. +|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~----a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ----VWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH----HHHH
Confidence 4468888888899999999999999999854 2345788999999999997 99999999999997666555 6999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhh
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTK 411 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (784)
+..+|.+.|++++|+..|++..+.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld------------------------------------------------------- 196 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD------------------------------------------------------- 196 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC-------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-------------------------------------------------------
Confidence 9999999999999999999998732
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHH
Q 003946 412 DRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAAL 491 (784)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~ 491 (784)
.-+...|..+..++.+.|++++|+..|+++.+.. +-+...|
T Consensus 197 ------------------------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~ 237 (382)
T 2h6f_A 197 ------------------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVW 237 (382)
T ss_dssp ------------------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHH
T ss_pred ------------------------------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHH
Confidence 3367899999999999999999999999999987 6678889
Q ss_pred HHHHHHHHH-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 492 GHVITLCIS-LGWLDQA-----HDLLDEMHLAGVRASSSVYASLLKAYIEAN--RPREVTALLRDARSAGIQLDASCYEA 563 (784)
Q Consensus 492 ~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ 563 (784)
+.+..++.+ .|..++| ...|+...+.. +-+...|+.+...|.+.| ++++|...+.++ +.. ..+...+..
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~ 314 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHH
Confidence 999999999 6665777 58888888765 336889999999999988 689999999988 332 446778889
Q ss_pred HHHHHHHcC---------ChhHHHHHHHHh-HhcCCCCCcHHHHHHHHHHHH
Q 003946 564 LLQSKIVQK---------DTPGALHLFKEM-KESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 564 li~~~~~~g---------~~~~A~~~~~~m-~~~~~~~~~~~~~~~ll~~~~ 605 (784)
+...|.+.| ..++|+++++++ .+.. |.....|..+...+.
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D--P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELCEILAKEKD--TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHH
Confidence 999998864 258899999998 5543 665666666655443
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=9.4e-11 Score=117.52 Aligned_cols=232 Identities=9% Similarity=-0.002 Sum_probs=137.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRA--SSSVYASLLK 531 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~ 531 (784)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+..-.| ....|..+..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3445566777788888888888777665 3344456667777777788888888877777633112 1334677777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
.|...|++++|...|++..+.. +.+...|..+...|...|++++|+..|++..+.. |.+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776653 2245667777777777777777777777766542 555555555552333334566
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHHcCCC
Q 003946 612 LMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRL---MQDAEKALKRMRSLG-HLPN------AQTFHSMVTGYAAIGGK 681 (784)
Q Consensus 612 ~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~ll~a~~~~g~~ 681 (784)
+|.+.|+...+..+ .+...|..+...+...|+ .++|...+++..+.. -.|+ ..+|..+...|...| +
T Consensus 160 ~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 236 (272)
T 3u4t_A 160 KADSSFVKVLELKP--NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR-D 236 (272)
T ss_dssp HHHHHHHHHHHHST--TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC-C
Confidence 66666665555432 123444555555555555 455555555544321 0122 134444555555555 5
Q ss_pred HHHHHHHHHHHHh
Q 003946 682 YTEVTELWGEMKS 694 (784)
Q Consensus 682 ~~~a~~~~~~m~~ 694 (784)
+++|...+++..+
T Consensus 237 ~~~A~~~~~~al~ 249 (272)
T 3u4t_A 237 KVKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555554
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.36 E-value=1.7e-09 Score=108.44 Aligned_cols=222 Identities=10% Similarity=-0.007 Sum_probs=163.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS----LGWLDQAHDLLDEMHLAGVRASSSV 525 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~ 525 (784)
++.++..+...+...|++++|...|.+..+.+ +...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 45677777788888888888888888887644 34556677778888 888888888888888775 6778
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHhcCCCCCcHHHH
Q 003946 526 YASLLKAYIE----ANRPREVTALLRDARSAGIQLDASCYEALLQSKIV----QKDTPGALHLFKEMKESKIPRSGHQEF 597 (784)
Q Consensus 526 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 597 (784)
+..+...|.. .+++++|...|++..+.+ +...+..+-..|.. .++.++|+..|++..+.+ +...+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~ 149 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGC 149 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHH
Confidence 8888888888 888888888888887754 66777778778887 788888888888877755 24466
Q ss_pred HHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 598 EMLVKGCAQ----NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK----KRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 598 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 666666666 777777777777776543 34566667777777 777777777777777653 255556
Q ss_pred HHHHHHHH----cCCCHHHHHHHHHHHHh
Q 003946 670 SMVTGYAA----IGGKYTEVTELWGEMKS 694 (784)
Q Consensus 670 ~ll~a~~~----~g~~~~~a~~~~~~m~~ 694 (784)
.+...|.. .+ ++++|...+++..+
T Consensus 223 ~l~~~~~~g~~~~~-~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 223 NLGAMQYNGEGVTR-NEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHHHHTTSSSSC-CSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCCccc-CHHHHHHHHHHHHH
Confidence 66666666 66 77777777776665
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.36 E-value=1.7e-09 Score=108.50 Aligned_cols=224 Identities=9% Similarity=-0.033 Sum_probs=195.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE----ANRPREVTALLRDARSAGIQLDASCYE 562 (784)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 562 (784)
+..++..+...+...|++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55667788888999999999999999999843 67788889999999 999999999999998875 788888
Q ss_pred HHHHHHHH----cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCCHHHHH
Q 003946 563 ALLQSKIV----QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ----NHEAGLMAKLLQEVKEGQRIDCGVHDWN 634 (784)
Q Consensus 563 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~y~ 634 (784)
.+-..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|+...+.+ +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~ 150 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCT 150 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHH
Confidence 99999999 999999999999998865 46788999999999 999999999999998754 566788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcccCCCCCCCHH
Q 003946 635 NVIHFFCK----KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA----IGGKYTEVTELWGEMKSFASSTSMNFDEE 706 (784)
Q Consensus 635 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~~a~~~~~~m~~~~~~~~~~p~~~ 706 (784)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+ ++++|...+++..+. . +..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~------~-~~~ 219 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK-NFKEALARYSKACEL------E-NGG 219 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC-CHHHHHHHHHHHHHT------T-CHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHhC------C-CHH
Confidence 88888988 999999999999999874 56778888888888 88 999999999998872 2 367
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 003946 707 LLDSVLYTFVR----GGFFARANEVVAMMEEGK 735 (784)
Q Consensus 707 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 735 (784)
.+..+...|.. .+++++|.+.+++..+.|
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 78889999998 999999999999998864
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.36 E-value=1e-10 Score=126.46 Aligned_cols=378 Identities=14% Similarity=0.033 Sum_probs=236.3
Q ss_pred HHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHH---HHhhhhhccCCcCcccccccccc
Q 003946 171 LSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELI---LEIGYLFQDGRVDPRKKCNAPLI 247 (784)
Q Consensus 171 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~---~~a~~~~~~~~m~~~~~~~~~~~ 247 (784)
+...+.+.|++++|.+.|++..+.|. ...+..|-..|... |.. ++|...|+ +..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~--------g~~~d~~~A~~~~~--~A~---------- 65 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGT--------RDPAQIKQAEATYR--AAA---------- 65 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC-------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcc--------CCCCCHHHHHHHHH--HHH----------
Confidence 44455667777888888887776652 22222222223222 445 77877777 442
Q ss_pred CCCCchhhHHHHHHHhhhcC-----ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHH---HHHHHhhcC
Q 003946 248 AMKPNTNTFNIALAGCLLFE-----TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKL---QRHIDEAVN 319 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g-----~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l---~~~~~~~~~ 319 (784)
..+...+..+-..+...+ ++++|+..|+...+.|. + ..+..|...|...+..+.+.+. +......+.
T Consensus 66 --~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 66 --DTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY 140 (452)
T ss_dssp -------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC
T ss_pred --hCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC
Confidence 114444555555343333 77889999988888662 2 3666777777776655444333 333333333
Q ss_pred CChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccc
Q 003946 320 LSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGII 399 (784)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (784)
+. .+..|...|...+.++++......+...-
T Consensus 141 ~~------a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a------------------------------------------- 171 (452)
T 3e4b_A 141 PE------AGLAQVLLYRTQGTYDQHLDDVERICKAA------------------------------------------- 171 (452)
T ss_dssp TT------HHHHHHHHHHHHTCGGGGHHHHHHHHHHH-------------------------------------------
T ss_pred HH------HHHHHHHHHHcCCCcccCHHHHHHHHHHH-------------------------------------------
Confidence 32 47788888888887777776655444321
Q ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcC---ChHHHHHHHHH
Q 003946 400 ENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAG---KTKELTHFLIK 476 (784)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~ 476 (784)
...++..+..|...|.+.| +.++|++.|.+
T Consensus 172 -----------------------------------------------~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~ 204 (452)
T 3e4b_A 172 -----------------------------------------------LNTTDICYVELATVYQKKQQPEQQAELLKQMEA 204 (452)
T ss_dssp -----------------------------------------------TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 1222237778888888899 89999999999
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHH
Q 003946 477 AEKENLQVSHDDAALGHVITLCISL----GWLDQAHDLLDEMHLAGVRASSSVYASLLKA-Y--IEANRPREVTALLRDA 549 (784)
Q Consensus 477 m~~~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m 549 (784)
....| .++...+..+...|... +++++|...|+... .| +...+..|... | ...+++++|...|++.
T Consensus 205 aa~~g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 205 GVSRG---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNG 277 (452)
T ss_dssp HHHTT---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 99888 67776656677777554 68999999999988 44 56677777766 4 4688999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh----cCcHHHHHHHHHHH
Q 003946 550 RSAGIQLDASCYEALLQSKIVQK-----DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ----NHEAGLMAKLLQEV 620 (784)
Q Consensus 550 ~~~g~~p~~~t~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~ 620 (784)
.+.| +...+..|-..|. .| +.++|+..|++.. +.+...+..|...|.. ..++++|..+|+..
T Consensus 278 a~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 278 RAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 8866 6677777777776 45 8999999998876 3346677777777766 34889999999988
Q ss_pred HhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 621 KEGQRIDCGVHDWNNVIHFFCK----KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 621 ~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
.+.+ +......|...|.. ..+.++|...|+...+.|. |+.......+....... +.++|..+.++..+
T Consensus 349 a~~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~-~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 349 ARNG----QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPA-QRAEGQRLVQQELA 420 (452)
T ss_dssp HTTT----CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHH
T ss_pred HhhC----hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHH
Confidence 8754 33456667777664 4588899999998888763 22222222222222233 45566666665444
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=3.2e-11 Score=124.82 Aligned_cols=279 Identities=12% Similarity=-0.009 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD----DAALGHVITLCISLGWLDQAHDLLDEMHLA----GVR-AS 522 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~ 522 (784)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 345566778889999999999999998875 334 356788889999999999999999987643 211 12
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------hhHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGI-QLD----ASCYEALLQSKIVQKD--------------------TPGA 577 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~A 577 (784)
..++..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 56788899999999999999999998754210 123 3478888889999999 9999
Q ss_pred HHHHHHhHhc----CCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 003946 578 LHLFKEMKES----KIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG----VHDWNNVIHFFCKKRLMQDA 649 (784)
Q Consensus 578 ~~~~~~m~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A 649 (784)
+..+++.... +..+.....+..+...+...|++++|.+.++...+.....++ ..++..+...|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998876542 222333457888889999999999999999887653221122 34788999999999999999
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHH
Q 003946 650 EKALKRMRSLGH-LPN----AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFAR 723 (784)
Q Consensus 650 ~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 723 (784)
.+.+++..+..- .++ ..++..+...+...| ++++|...+++..+.....+-.+ ...++..+...|.+.|++++
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 999998875310 112 557778888999999 99999999998876433222111 24578889999999999999
Q ss_pred HHHHHHHHHhC
Q 003946 724 ANEVVAMMEEG 734 (784)
Q Consensus 724 A~~l~~~m~~~ 734 (784)
|.+.+++..+.
T Consensus 322 A~~~~~~a~~~ 332 (338)
T 3ro2_A 322 AMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=7.8e-11 Score=126.20 Aligned_cols=212 Identities=16% Similarity=0.025 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchh
Q 003946 290 LLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLP 369 (784)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 369 (784)
.+..+...+...|++++|...|++..+..+.+......+|..+...|...|++++|...|++..+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------- 118 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS----------- 118 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------
Confidence 344455667777777777777777776544333211125777777788888888888887777653210
Q ss_pred hhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC
Q 003946 370 FNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP 449 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 449 (784)
.+....
T Consensus 119 --------------------------------------------------------------------------~~~~~~ 124 (411)
T 4a1s_A 119 --------------------------------------------------------------------------MNDRLG 124 (411)
T ss_dssp --------------------------------------------------------------------------TTCHHH
T ss_pred --------------------------------------------------------------------------ccCchH
Confidence 000011
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCCCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENL---QVSHDDAALGHVITLCISLGW-----------------LDQAHD 509 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~p~~~~~~~li~~~~~~g~-----------------~~~a~~ 509 (784)
...+|..+...|...|++++|...+.+...... ..+....++..+...|...|+ +++|..
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 225667777777888888888888777654310 002223456666777777777 777777
Q ss_pred HHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChhHHHH
Q 003946 510 LLDEMHLA----GVR-ASSSVYASLLKAYIEANRPREVTALLRDARSAGI-QLD----ASCYEALLQSKIVQKDTPGALH 579 (784)
Q Consensus 510 ~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~ 579 (784)
.+++..+. +-. ....++..+...|...|++++|...+++..+... .++ ...+..+...|...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 77665432 111 1234666677777777777777777776643210 011 1255666666666677777766
Q ss_pred HHHHhHh
Q 003946 580 LFKEMKE 586 (784)
Q Consensus 580 ~~~~m~~ 586 (784)
.+++...
T Consensus 285 ~~~~al~ 291 (411)
T 4a1s_A 285 HYKRTLA 291 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=2.2e-10 Score=122.28 Aligned_cols=311 Identities=11% Similarity=0.023 Sum_probs=197.6
Q ss_pred CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cCCCh
Q 003946 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKAD-----SNLLIIMAHIYERNGRREELRKLQRHIDEA--VNLSD 322 (784)
Q Consensus 250 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~ 322 (784)
.+....+...-..+.+.|++++|+..|+...+.+ |+ ..++..+...|...|++++|...+++.... ...+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 4556677778888899999999999999998864 43 257888899999999999999999986554 11222
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccc
Q 003946 323 IQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENH 402 (784)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (784)
.....++..+...|...|++++|...|++..+.....
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------------------- 120 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL------------------------------------------- 120 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-------------------------------------------
Confidence 2222368899999999999999999999887743200
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCC----------------
Q 003946 403 ILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGK---------------- 466 (784)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---------------- 466 (784)
........++..+...|...|+
T Consensus 121 ------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 121 ------------------------------------------NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp ------------------------------------------TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred ------------------------------------------ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 0000112477788888888888
Q ss_pred ----hHHHHHHHHHHHHcCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHH
Q 003946 467 ----TKELTHFLIKAEKENL---QVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV-RAS----SSVYASLLKAYI 534 (784)
Q Consensus 467 ----~~~a~~~~~~m~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~ 534 (784)
+++|...+.+...... ..+....++..+...|...|++++|...+++..+... .++ ..++..+...|.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 8888888877653210 0111234566777778888888888888887764310 112 236667777777
Q ss_pred HcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 535 EANRPREVTALLRDARSAGI-QLD----ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+......+
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------------- 302 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND---------------- 302 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC----------------
Confidence 78888888777777643210 011 345556666666666666666666655432100000
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcC
Q 003946 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL----GHLP-NAQTFHSMVTGYAAIG 679 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~a~~~~g 679 (784)
......++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|
T Consensus 303 ----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 303 ----------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 0001345666666666677777777666665432 1111 1344555555666655
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=1.9e-10 Score=118.92 Aligned_cols=286 Identities=13% Similarity=0.026 Sum_probs=171.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchh
Q 003946 290 LLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLP 369 (784)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 369 (784)
.+......+.+.|++++|...|++..+..+.+......++..+...|...|++++|.+.+++..+....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------- 75 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART----------- 75 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----------
Confidence 344556677888888888888888877644443221226888889999999999999999887763210
Q ss_pred hhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC
Q 003946 370 FNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP 449 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 449 (784)
.+....
T Consensus 76 --------------------------------------------------------------------------~~~~~~ 81 (338)
T 3ro2_A 76 --------------------------------------------------------------------------IGDQLG 81 (338)
T ss_dssp --------------------------------------------------------------------------HTCHHH
T ss_pred --------------------------------------------------------------------------ccccHH
Confidence 000011
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHcCC--------------------HH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD----DAALGHVITLCISLGW--------------------LD 505 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~----~~~~~~li~~~~~~g~--------------------~~ 505 (784)
...++..+...+...|++++|...+.+..+... -.++ ..++..+...+...|+ ++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR-ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 235777888889999999999999988765321 0122 3367777788888888 88
Q ss_pred HHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChh
Q 003946 506 QAHDLLDEMHLA----GVR-ASSSVYASLLKAYIEANRPREVTALLRDARSAGI-QLD----ASCYEALLQSKIVQKDTP 575 (784)
Q Consensus 506 ~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~ 575 (784)
+|...+++..+. +.. ....++..+...|...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 888888776532 111 1234666777777888888888888877643210 011 225666666666677777
Q ss_pred HHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 576 GALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKR 655 (784)
Q Consensus 576 ~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 655 (784)
+|...+++..+......+. .....++..+...|...|++++|.+.+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~--------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDR--------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCH--------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcch--------------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7776666654321000000 00123455555555555555555555555
Q ss_pred HHhC----CCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 656 MRSL----GHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 656 m~~~----g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
..+. +-.+ ...++..+...|...| ++++|...+++..+
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 4432 1000 1234445555555666 66666666665554
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=5.6e-09 Score=106.68 Aligned_cols=203 Identities=13% Similarity=0.077 Sum_probs=127.0
Q ss_pred CCCHHHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003946 448 QPTEKIYIKLVKAFL-------EAGKT-------KELTHFLIKAEKE-NLQVSHDDAALGHVITLCISLGWLDQAHDLLD 512 (784)
Q Consensus 448 ~p~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 512 (784)
+-++..|..+...+. +.|++ ++|..+|++..+. . +-+...|..+...+.+.|++++|..+|+
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 123 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL---KKNMLLYFAYADYEESRMKYEKVHSIYN 123 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 335667777777665 35775 8888889888873 3 3455678888888888888888888888
Q ss_pred HHHHcCCCCC-HH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHhHhcCC
Q 003946 513 EMHLAGVRAS-SS-VYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKI-VQKDTPGALHLFKEMKESKI 589 (784)
Q Consensus 513 ~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~~~~~~m~~~~~ 589 (784)
...+. .|+ .. +|..+...+.+.|++++|..+|++..+... ++...|........ ..|+.++|..+|++..+..
T Consensus 124 ~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~- 199 (308)
T 2ond_A 124 RLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 199 (308)
T ss_dssp HHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-
T ss_pred HHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 88874 343 33 788888888888888888888888876532 23344433322221 2577777777777766543
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 590 PRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC--GVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 590 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
|.+...|..++..+.+.|++++|..+|+.........| ....|..++..+.+.|+.++|..+++++.+
T Consensus 200 -p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 200 -GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp -TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555555554321222 234455555555555555555555555544
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.25 E-value=5e-10 Score=121.07 Aligned_cols=343 Identities=11% Similarity=0.022 Sum_probs=169.9
Q ss_pred HHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCH---HHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 003946 259 ALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRR---EELRKLQRHIDEAVNLSDIQFRQFYNCLLSC 335 (784)
Q Consensus 259 ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~---~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~ 335 (784)
+-..+.+.|++++|+++|+...+.| +...+..|...|...|+. ++|.+.|+...+. +.. .+..|...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~----A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPR----AQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHH----HHHHHHHH
Confidence 4556678899999999999998876 334445566667778887 8999999888765 222 36666665
Q ss_pred HHhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhh
Q 003946 336 HLKFG-----DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFT 410 (784)
Q Consensus 336 ~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (784)
+...| +.++|...|++..+.|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~----------------------------------------------------- 105 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGE----------------------------------------------------- 105 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTC-----------------------------------------------------
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCC-----------------------------------------------------
Confidence 55555 77899999887776431
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHcCCCCCCC
Q 003946 411 KDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKT---KELTHFLIKAEKENLQVSHD 487 (784)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~p~ 487 (784)
|+ .+..|...|...+.. .++.+.+......| .|.
T Consensus 106 --------------------------------------~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~ 142 (452)
T 3e4b_A 106 --------------------------------------GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPE 142 (452)
T ss_dssp --------------------------------------SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTT
T ss_pred --------------------------------------HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHH
Confidence 11 222333333333322 22334444444444 222
Q ss_pred HHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHH
Q 003946 488 DAALGHVITLCISLGWLD----QAHDLLDEMHLAGVRASSSVYASLLKAYIEAN---RPREVTALLRDARSAGIQLDASC 560 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~----~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t 560 (784)
. ...+...|...+.++ .+..++...... +...+..|...|.+.| +.++|...|++..+.| .++...
T Consensus 143 a--~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~ 215 (452)
T 3e4b_A 143 A--GLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQR 215 (452)
T ss_dssp H--HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHH
T ss_pred H--HHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHH
Confidence 2 333444455444332 333333222221 2225556666666666 6666666666666655 344444
Q ss_pred HHHHHHHHHHc----CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH-H--HhcCcHHHHHHHHHHHHhcCCCCCCHHHH
Q 003946 561 YEALLQSKIVQ----KDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-C--AQNHEAGLMAKLLQEVKEGQRIDCGVHDW 633 (784)
Q Consensus 561 ~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~y 633 (784)
+..|-..|... ++.++|+..|++.. .| +...+..+... + ...+++++|.++|+...+.+ +...+
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~ 286 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA-PG----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAE 286 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 44444444433 46666666666654 22 23344444444 2 34566666666666665543 44555
Q ss_pred HHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcccCCCCCCC
Q 003946 634 NNVIHFFCKKR-----LMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA----IGGKYTEVTELWGEMKSFASSTSMNFD 704 (784)
Q Consensus 634 ~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~~a~~~~~~m~~~~~~~~~~p~ 704 (784)
..|...|. .| ++++|.+.|++.. .| +...+..|-..|.. .. ++++|...|++..+ .| +
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~----~g---~ 353 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKV-YPQKALDHLLTAAR----NG---Q 353 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSC-CHHHHHHHHHHHHT----TT---C
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCc-CHHHHHHHHHHHHh----hC---h
Confidence 55555555 34 6666666666555 22 44455555544544 23 66666666666655 22 2
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 003946 705 EELLDSVLYTFVR----GGFFARANEVVAMMEEGKM 736 (784)
Q Consensus 705 ~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 736 (784)
...+..|...|.. ..+.++|..+++...+.|.
T Consensus 354 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 354 NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 2334445555543 3456667777766666653
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=5.8e-09 Score=106.55 Aligned_cols=218 Identities=9% Similarity=0.045 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 468 KELTHFLIKAEKENLQVSHDDAALGHVITLCIS-------LGWL-------DQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 468 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
++|..+|++..... +-+...|..+...+.. .|++ ++|..+|+...+.-.+-+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 67888999988765 5677778888777753 5775 89999999988831233677899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH-hcCcH
Q 003946 534 IEANRPREVTALLRDARSAGIQLD-AS-CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA-QNHEA 610 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~-~~~~~ 610 (784)
.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. |.....|........ ..|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999875 453 33 78889999999999999999999988765 444445544433332 36889
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCCHHHHHH
Q 003946 611 GLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLG-HLP--NAQTFHSMVTGYAAIGGKYTEVTE 687 (784)
Q Consensus 611 ~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~ll~a~~~~g~~~~~a~~ 687 (784)
++|.++|+...+..+ -+...|..++..+.+.|++++|..+|++..... +.| ....|..++......| +.+.|..
T Consensus 186 ~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g-~~~~a~~ 262 (308)
T 2ond_A 186 SVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG-DLASILK 262 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS-CHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC-CHHHHHH
Confidence 999999988877543 256778888888889999999999999988863 455 3667888888888888 9999999
Q ss_pred HHHHHHhc
Q 003946 688 LWGEMKSF 695 (784)
Q Consensus 688 ~~~~m~~~ 695 (784)
+++++.+.
T Consensus 263 ~~~~a~~~ 270 (308)
T 2ond_A 263 VEKRRFTA 270 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888774
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=1e-07 Score=106.53 Aligned_cols=466 Identities=9% Similarity=0.011 Sum_probs=275.9
Q ss_pred cccccccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCc-hhHHHHHHHHHhccChhhHHHHHHHHHHHHH
Q 003946 78 SMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRK-TLVNKILTSFVESLDSKWLEKAYGLVEQAFE 156 (784)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 156 (784)
.+...+...+.|...|..+|+.+...+.++.+..+|+++...- |.. ..+...+..-.+.++....+.+..+|++.+.
T Consensus 54 ~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 4445556678899999999999999999999999999998843 444 4445555555544431226678888888766
Q ss_pred hcccccCccchHHHHHHHHhhCCCC--------ccHHHHHHHHhhc-CC-CCC-hHHHHHHHHHHhhcCC-CchhhHHHH
Q 003946 157 EGKQILLEKEPLIYLSLGLSKCGLP--------VPASTILRKLVAT-EQ-YPP-VTAWSAILAHMSLTAP-GAYLAAELI 224 (784)
Q Consensus 157 ~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~-g~-~p~-~~~~~~ll~~~~~~~~-~~~~~~~~~ 224 (784)
. .+..++++.+..-+....+.+.. +...++|+..... |. .|+ ...|...|......+. +.....+.+
T Consensus 132 ~-~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 132 K-ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp S-SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred h-cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 5 21225666666655555555554 2344788876654 76 554 4688888865543211 112234567
Q ss_pred HHhhhhhccCCcCccccccccccCCCCc--hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcC
Q 003946 225 LEIGYLFQDGRVDPRKKCNAPLIAMKPN--TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNG 302 (784)
Q Consensus 225 ~~a~~~~~~~~m~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 302 (784)
+.+..+|+ +... ++.. ..+|..-. .+.+.-+...+.+++.+ ...
T Consensus 211 ~~~R~iy~--raL~----------iP~~~~~~~w~~Y~-~fe~~~~~~~a~~~~~e---------------------~~~ 256 (679)
T 4e6h_A 211 QYIRKLYK--TLLC----------QPMDCLESMWQRYT-QWEQDVNQLTARRHIGE---------------------LSA 256 (679)
T ss_dssp HHHHHHHH--HHTT----------SCCSSHHHHHHHHH-HHHHHHCTTTHHHHHHH---------------------HHH
T ss_pred HHHHHHHH--HHHh----------CccHHHHHHHHHHH-HHHHhcCcchHHHHHHH---------------------hhH
Confidence 88888888 6532 2111 12232111 11111011111111111 011
Q ss_pred CHHHHHHHHHHHHhh------cCCC----------------hhhHHHHHHHHHHHHHhcC-------ChhHHHHHHHHHH
Q 003946 303 RREELRKLQRHIDEA------VNLS----------------DIQFRQFYNCLLSCHLKFG-------DLNSASKMVLEML 353 (784)
Q Consensus 303 ~~~~A~~l~~~~~~~------~~~~----------------~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~ 353 (784)
+++.|...+.++... ..|. .......|...+.---..+ ..+.+..+|++..
T Consensus 257 ~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL 336 (679)
T 4e6h_A 257 QYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA 336 (679)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH
Confidence 223333333332111 0000 0011124666665443332 1234556676666
Q ss_pred HHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhH
Q 003946 354 QRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGML 433 (784)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (784)
..
T Consensus 337 ~~------------------------------------------------------------------------------ 338 (679)
T 4e6h_A 337 QH------------------------------------------------------------------------------ 338 (679)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 52
Q ss_pred HHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003946 434 QKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELT-HFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLD 512 (784)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 512 (784)
+.-+...|-..+.-+...|+.++|. .+|.+..... +.+...|...+...-+.|+++.|.++|+
T Consensus 339 -------------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~---P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 339 -------------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI---PNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp -------------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1234566666666667777777775 7777776543 4555566667777777777888887777
Q ss_pred HHHHcC---------CCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH
Q 003946 513 EMHLAG---------VRA------------SSSVYASLLKAYIEANRPREVTALLRDARSA-GIQLDASCYEALLQSKIV 570 (784)
Q Consensus 513 ~m~~~g---------~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~ 570 (784)
.+.... -.| ...+|...+....+.|..+.|..+|.+..+. + .+....|...+..-.+
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 776531 013 1346777777777788888888888888764 2 1122233222222222
Q ss_pred c-CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHH
Q 003946 571 Q-KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI-DCGVHDWNNVIHFFCKKRLMQD 648 (784)
Q Consensus 571 ~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~y~~li~~~~~~g~~~~ 648 (784)
. ++.+.|..+|+...+.- |.+...+...+......|+.+.|..+|+......+. .-....|...+..-.+.|+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred hCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2 45788888888877763 566667777777777788888888888888765421 0134678888888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003946 649 AEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679 (784)
Q Consensus 649 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 679 (784)
+.++.+++.+. .|+......++.-|.-.+
T Consensus 560 ~~~v~~R~~~~--~P~~~~~~~f~~ry~~~~ 588 (679)
T 4e6h_A 560 VRTLEKRFFEK--FPEVNKLEEFTNKYKVLD 588 (679)
T ss_dssp HHHHHHHHHHH--STTCCHHHHHHHHTCBTT
T ss_pred HHHHHHHHHHh--CCCCcHHHHHHHHhcCCc
Confidence 99999999885 566566666777665433
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=5.7e-08 Score=108.63 Aligned_cols=235 Identities=10% Similarity=0.029 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003946 506 QAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVT-ALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEM 584 (784)
Q Consensus 506 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 584 (784)
.+..+|++.... ++-+...|-..+.-+...|+.++|. .+|++.... ++.+...|...+...-+.|++++|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555544 2335566666666666666666664 666666543 1234444555666666666666666666666
Q ss_pred HhcC---------CCCC-----------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhc
Q 003946 585 KESK---------IPRS-----------GHQEFEMLVKGCAQNHEAGLMAKLLQEVKEG-QRIDCGVHDWNNVIHFFCKK 643 (784)
Q Consensus 585 ~~~~---------~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~y~~li~~~~~~ 643 (784)
.+.. ..|. ....|...+....+.|+.+.|.++|+...+. ....+. .|-..+..--+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~--lyi~~A~lE~~~ 482 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD--IYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH--HHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHh
Confidence 5421 0021 2235666666667777788888888877664 222222 333333333343
Q ss_pred -CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChH
Q 003946 644 -RLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFA 722 (784)
Q Consensus 644 -g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 722 (784)
++.+.|.++|+..++. +.-+...|...+.-....| +.+.|..+|+.......+ ..-....|...+..-.+.|+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~-~~~~AR~lferal~~~~~--~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN-EESQVKSLFESSIDKISD--SHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHTTTSSS--TTHHHHHHHHHHHHHHHTCCSH
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHcCCHH
Confidence 4478888888888775 3335556667777666778 888888888887762110 0013456888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003946 723 RANEVVAMMEEGKMFIDKYKYRTLFLKY 750 (784)
Q Consensus 723 ~A~~l~~~m~~~g~~pd~~~~~~li~~~ 750 (784)
.+.++.++|.+. .|+......++.++
T Consensus 559 ~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 559 SVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 888888888875 56666666666444
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=7.6e-11 Score=120.65 Aligned_cols=245 Identities=13% Similarity=0.037 Sum_probs=146.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKE-------NLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA----- 517 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 517 (784)
+..+|..+...+...|++++|..+|.++.+. . .+....++..+...|...|++++|...+++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4578888899999999999999999998763 2 1334556777888888888999998888887754
Q ss_pred -CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 518 -GV-RASSSVYASLLKAYIEANRPREVTALLRDARSA------GIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 518 -g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
+- +....++..+...|...|++++|...|++..+. +-.| ....+..+...+...|++++|++.++++.+..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 223556777777777888888888887776543 1111 22345555555666666666666665554420
Q ss_pred CCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------C
Q 003946 589 IPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSL-------G 660 (784)
Q Consensus 589 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-------g 660 (784)
+.. ..+..| ...++..+...|...|++++|.+.+++..+. .
T Consensus 184 -----------------------------~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 184 -----------------------------QTK--LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp -----------------------------HHT--SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----------------------------HHH--hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 000 000011 2345677777777777777777777777642 1
Q ss_pred CCCCHH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 661 HLPNAQ-------TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 661 ~~p~~~-------~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..|... .+..+...+...+ .+.++...++.... ....+..++..+...|.+.|++++|.+.+++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGT-SFGEYGGWYKACKV-----DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CCHHHHHHHHHHC-------C-CSCCCC--------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHH-HHHHHHHHHhhcCC-----CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112111 1222222233333 44555555555443 1222456788899999999999999999988775
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.21 E-value=3.4e-09 Score=99.02 Aligned_cols=164 Identities=13% Similarity=0.083 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
..|..+...|.+.|++++|+..|++..+.. +-+..++..+...|.+.|++++|...+........ .+...+..+..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 445555555555555555555555555443 33444455555555555555555555555544321 23444444444
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
.+...++++.|...+.+..+. . |.+...+..+...+.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-----------------------------------~--~~~~~~~~~lg~~~~~~g~~~ 124 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-----------------------------------N--TVYADAYYKLGLVYDSMGEHD 124 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----------------------------------C--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-----------------------------------C--ccchHHHHHHHHHHHHhCCch
Confidence 455555555555555544433 2 333444444444444444444
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 612 LMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 612 ~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
+|.+.|+...+.++ .+..+|..+..+|.+.|++++|++.|++.++
T Consensus 125 ~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 125 KAIEAYEKTISIKP--GFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcc--hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444322 1344555566666666666666666666555
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.21 E-value=4.3e-09 Score=98.29 Aligned_cols=165 Identities=10% Similarity=0.058 Sum_probs=142.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 522 SSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 522 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
+..+|..+...|.+.|++++|+..|++..+.. +-+...|..+...|.+.|++++|+..+....... |.....+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 66788888888999999999999999887764 2367788888888999999999999998887765 66778888888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCC
Q 003946 602 KGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGG 680 (784)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~ 680 (784)
..+...++++.+.+.++......+ .+...+..+...|.+.|++++|++.|++..+. .| +..+|..+..+|...|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g- 155 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNT--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKG- 155 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCC-
Confidence 999999999999999999887654 25678999999999999999999999999985 45 6788999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 003946 681 KYTEVTELWGEMKS 694 (784)
Q Consensus 681 ~~~~a~~~~~~m~~ 694 (784)
++++|...|++..+
T Consensus 156 ~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 156 LRDEAVKYFKKALE 169 (184)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999887
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.19 E-value=8.9e-10 Score=119.89 Aligned_cols=214 Identities=9% Similarity=-0.034 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 467 TKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWL-DQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTAL 545 (784)
Q Consensus 467 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 545 (784)
+++++..+.+..... +.+...+..+...+...|++ ++|...|++..+.. +-+...|..+...|.+.|++++|...
T Consensus 84 ~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566777777766544 45777788888888889999 99999999988764 23588889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHc---------CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc--------C
Q 003946 546 LRDARSAGIQLDASCYEALLQSKIVQ---------KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN--------H 608 (784)
Q Consensus 546 ~~~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~--------~ 608 (784)
|++..+. .|+...+..+...|... |++++|+..|++..+.. |.+...|..+..+|... |
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 9998876 57778888888888888 88999999999888765 77788888888888888 8
Q ss_pred cHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHH
Q 003946 609 EAGLMAKLLQEVKEGQRI-DCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~-~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~ 686 (784)
++++|.+.|+...+..+. .-+...|..+..+|...|++++|.+.|++..+. .| +...+..+...+...| ++++|.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg-~~~eAi 312 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLS-RLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHH-HHHHHH
Confidence 888888888888875320 016677888888888888888888888888774 35 4566777777888888 888777
Q ss_pred HHHHH
Q 003946 687 ELWGE 691 (784)
Q Consensus 687 ~~~~~ 691 (784)
..+.+
T Consensus 313 ~~~~~ 317 (474)
T 4abn_A 313 ESKGK 317 (474)
T ss_dssp HHTTT
T ss_pred HHhcc
Confidence 65543
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.16 E-value=5.2e-09 Score=110.71 Aligned_cols=235 Identities=8% Similarity=-0.015 Sum_probs=160.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-----CHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSH----DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-A-----SSS 524 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-----~~~ 524 (784)
......+...|++++|...|.+..+.-. -.+ ...++..+...|...|+++.|...+.+..+.--. + ...
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLI-FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGG-GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 3355667889999999999999876421 112 2356888889999999999999999987753111 1 245
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChhHHHHHHHHhHhc----CCCCCcHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGI-QLD----ASCYEALLQSKIVQKDTPGALHLFKEMKES----KIPRSGHQ 595 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~ 595 (784)
+++.+...|...|++++|...|++..+... .++ ..++..+-..|...|++++|+..+++..+. +..|....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 788888999999999999999988754210 122 246777888888899999999988887662 22244566
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG---VHDWNNVIHFFCKKRL---MQDAEKALKRMRSLGHLPN-AQTF 668 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~ 668 (784)
++..+...+.+.|++++|...++...+.....++ ...++.+...|...|+ +++|+.++++. +..|+ ...+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 7777777788888888888777766543111011 2234566667777777 66666666554 22332 3345
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 669 HSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 669 ~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
..+...|...| ++++|...+++..+
T Consensus 343 ~~la~~y~~~g-~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERK-NFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence 56666777777 77777777777655
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.14 E-value=2.1e-09 Score=117.01 Aligned_cols=216 Identities=11% Similarity=-0.048 Sum_probs=178.4
Q ss_pred ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHH
Q 003946 268 TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRR-EELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSAS 346 (784)
Q Consensus 268 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~-~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 346 (784)
.++++++.++...... +.+...+..+...|...|++ ++|.+.|++..+..+.... .|..+..+|.+.|++++|.
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE----AWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHH
Confidence 4677788888766543 34668888999999999999 9999999999887655544 6999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHH
Q 003946 347 KMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVL 426 (784)
Q Consensus 347 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (784)
+.|++..+
T Consensus 158 ~~~~~al~------------------------------------------------------------------------ 165 (474)
T 4abn_A 158 TCFSGALT------------------------------------------------------------------------ 165 (474)
T ss_dssp HHHHHHHT------------------------------------------------------------------------
T ss_pred HHHHHHHh------------------------------------------------------------------------
Confidence 99998876
Q ss_pred HHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 003946 427 QTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEA---------GKTKELTHFLIKAEKENLQVSHDDAALGHVITL 497 (784)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 497 (784)
..|+...|..+...+... |++++|...|++..+.. +.+...|..+..+
T Consensus 166 --------------------~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~ 222 (474)
T 4abn_A 166 --------------------HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNA 222 (474)
T ss_dssp --------------------TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred --------------------hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 466678888888899898 99999999999998876 5678889999999
Q ss_pred HHHc--------CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 498 CISL--------GWLDQAHDLLDEMHLAGVR--ASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567 (784)
Q Consensus 498 ~~~~--------g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 567 (784)
|... |++++|...|++..+.... -+...|..+..+|...|++++|...|++..+.. .-+...+..+...
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~ 301 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9988 8899999999999886420 378889999999999999999999999987764 2356678888888
Q ss_pred HHHcCChhHHHHHHHHh
Q 003946 568 KIVQKDTPGALHLFKEM 584 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m 584 (784)
+...|+.++|++.+.++
T Consensus 302 ~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 302 LEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 88888888887765443
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=7.9e-09 Score=109.33 Aligned_cols=239 Identities=12% Similarity=0.038 Sum_probs=163.7
Q ss_pred HHHHhhhcCChhHHHHHHHhhhhCCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCC-hhhHHHHHH
Q 003946 259 ALAGCLLFETTRKAEQLLDIMPRIGV-KAD----SNLLIIMAHIYERNGRREELRKLQRHIDEAV--NLS-DIQFRQFYN 330 (784)
Q Consensus 259 ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~-~~~~~~~~~ 330 (784)
.-..+...|++++|+..|+...+.-- .+| ..++..+...|...|+++.|...+.+..+.. ... ......+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34456688999999999999876411 122 3678888999999999999999998877641 111 222223688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhh
Q 003946 331 CLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFT 410 (784)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (784)
.+...|...|++++|.+.|++..+....
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------------------- 216 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEA---------------------------------------------------- 216 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 8999999999999999999888764310
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCC
Q 003946 411 KDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKE----NLQVSH 486 (784)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~p 486 (784)
.+.......++..+...|...|++++|...|.+..+. +. .+.
T Consensus 217 ---------------------------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 262 (383)
T 3ulq_A 217 ---------------------------------EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-LPS 262 (383)
T ss_dssp ---------------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGG
T ss_pred ---------------------------------cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-chh
Confidence 0000011257888889999999999999999987762 20 133
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCC-H
Q 003946 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAG----VRASSSVYASLLKAYIEANR---PREVTALLRDARSAGIQLD-A 558 (784)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~ 558 (784)
...++..+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ +++|..++++. +..|+ .
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~ 339 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLE 339 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHH
Confidence 35568888888999999999999998876531 11122334566677777777 66666666654 22222 2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
..+..+...|...|++++|...+++..+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3566677777777788887777776654
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=3.2e-08 Score=104.12 Aligned_cols=277 Identities=10% Similarity=-0.035 Sum_probs=199.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDA----ALGHVITLCISLGWLDQAHDLLDEMHLAGV-RAS----SS 524 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~ 524 (784)
+......+...|++++|...+.+...... ..+.. +++.+...+...|++++|...+++..+..- ..+ ..
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 33445566789999999999999877542 22322 456667788899999999999998775311 112 23
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCC---CCcH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSA----GIQ--LD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIP---RSGH 594 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~ 594 (784)
++..+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++....... +...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 4667888899999999999999987542 221 32 345677888889999999999999988764321 1134
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHH
Q 003946 595 QEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWN-----NVIHFFCKKRLMQDAEKALKRMRSLGHLP---NAQ 666 (784)
Q Consensus 595 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~ 666 (784)
.++..+...+...|++++|...++..............+. ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 5678888899999999999999998765421111111222 23455789999999999999887643211 133
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 667 TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDE-ELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 667 ~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
.+..+...+...| ++++|...+++........+..++. ..+..+..++...|+.++|.+.+++...
T Consensus 255 ~~~~la~~~~~~g-~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILLG-EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5667778899999 9999999999887654333333333 3677788999999999999999988764
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=3.4e-10 Score=115.75 Aligned_cols=217 Identities=15% Similarity=0.056 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKE------NLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA------ 517 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------ 517 (784)
...++..+...|...|++++|...+.+.... +. .+....++..+...|...|++++|...|++..+.
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence 4578889999999999999999999998865 21 1334567888889999999999999999998865
Q ss_pred CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC
Q 003946 518 GVR-ASSSVYASLLKAYIEANRPREVTALLRDARSA------GIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKI 589 (784)
Q Consensus 518 g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 589 (784)
+-. ....++..+...|...|++++|..+|++..+. +-.| ...++..+...|...|++++|...++++.+...
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 222 24567888999999999999999999998764 2122 235677888888888999999998888775320
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHH
Q 003946 590 PRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ-RIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQT 667 (784)
Q Consensus 590 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~ 667 (784)
.. .+ + ...... ........+..+...+...+.+.+|...+++.... .| +..+
T Consensus 227 --~~--~~----------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 280 (311)
T 3nf1_A 227 --ER--EF----------G----------SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTT 280 (311)
T ss_dssp --HH--HH----------C----------------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHH
T ss_pred --Hh--cC----------C----------CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHH
Confidence 00 00 0 000000 00001112233333344444555555555555432 22 3456
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 668 FHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 668 ~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+..+...|...| ++++|..++++..+
T Consensus 281 ~~~la~~~~~~g-~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 281 LKNLGALYRRQG-KFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence 667777777777 77777777777655
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.10 E-value=5e-08 Score=102.87 Aligned_cols=134 Identities=11% Similarity=0.021 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-C
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSH-----DDAALGHVITLCISLGWLDQAHDLLDEMHLA----GVR-A 521 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~ 521 (784)
.++..+...|...|++++|...+.+...... -.+ ...+++.+...|...|++++|.+.|++..+. +-. .
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQ-NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5677788888888888888888888664321 011 2345667777888888888888888776642 111 1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 522 SSSVYASLLKAYIEANRPREVTALLRDARS-----AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 522 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
...++..+...|...|++++|...|++..+ .. .....++..+...|.+.|+.++|...+++..+.
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 134566677777778888888877777654 22 122455666666777777777777777766553
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=8e-08 Score=101.30 Aligned_cols=240 Identities=10% Similarity=-0.022 Sum_probs=160.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh--cCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 003946 293 IMAHIYERNGRREELRKLQRHIDEA--VNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPF 370 (784)
Q Consensus 293 ~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 370 (784)
.....+...|++++|...|++..+. ..++......++..+...|...|++++|...+.+..+...
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~------------- 172 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ------------- 172 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-------------
Confidence 3455578899999999999998765 2233333334789999999999999999999998877432
Q ss_pred hhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-
Q 003946 371 NAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP- 449 (784)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 449 (784)
. .....+
T Consensus 173 ----------------------------------~--------------------------------------~~~~~~~ 180 (378)
T 3q15_A 173 ----------------------------------N--------------------------------------HPLYSIR 180 (378)
T ss_dssp ----------------------------------T--------------------------------------STTCHHH
T ss_pred ----------------------------------h--------------------------------------CCCchhh
Confidence 0 000011
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENL---QVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA----GVRAS 522 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~ 522 (784)
...+++.+...|...|++++|.+.|.+..+... .......++..+...|...|++++|...|++..+. +.+..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 235788899999999999999999998765310 01112346778889999999999999999998861 22233
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHHcCC---hhHHHHHHHHhHhcCCCCCcHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGI---QLD-ASCYEALLQSKIVQKD---TPGALHLFKEMKESKIPRSGHQ 595 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~-~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~ 595 (784)
..++..+...|.+.|++++|...+++..+... .|. ...+..+-..+...++ .++|+..+++ .+..+....
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~ 337 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHH
Confidence 77888999999999999999999999876421 122 2344555555556666 6666666655 222122223
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEV 620 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~ 620 (784)
.+..+...|...|++++|.+.|+..
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444444444444444444443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.06 E-value=2.2e-08 Score=93.11 Aligned_cols=163 Identities=13% Similarity=0.065 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
..|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD---AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 456667777788888888888888776554 4566677777777788888888888888777663 335677777777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
.|...|++++|...++++.+.. ..+...+..+...+...|++++|...+++..+.. |.+...+..+...+...|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHH
Confidence 7777777877777777776553 3356666667777777777777777777766543 444445555555555555555
Q ss_pred HHHHHHHHHH
Q 003946 612 LMAKLLQEVK 621 (784)
Q Consensus 612 ~a~~~~~~~~ 621 (784)
+|.+.++...
T Consensus 162 ~A~~~~~~~~ 171 (186)
T 3as5_A 162 EALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.04 E-value=3.8e-08 Score=91.46 Aligned_cols=164 Identities=10% Similarity=0.016 Sum_probs=101.0
Q ss_pred hhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 003946 254 NTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLL 333 (784)
Q Consensus 254 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li 333 (784)
..|..+...+...|++++|+..++.+.+.. +.+..++..+...+...|++++|...++.+.+..+.... +|..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~a 83 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK----VATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHH
Confidence 345556666667777777777777766543 234456666666666777777777777666655333322 466666
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhh
Q 003946 334 SCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDR 413 (784)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (784)
..|.+.|++++|.+.|++.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------------------------- 106 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN--------------------------------------------------------- 106 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC---------------------------------------------------------
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC---------------------------------------------------------
Confidence 66666677777766666655421
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 003946 414 KFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH 493 (784)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 493 (784)
+.+...|..+...+...|++++|...+.+..+.. +.+..++..
T Consensus 107 ----------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 149 (186)
T 3as5_A 107 ----------------------------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---PNEGKVHRA 149 (186)
T ss_dssp ----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred ----------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---ccchHHHHH
Confidence 2234555666666666666666666666666554 344555666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003946 494 VITLCISLGWLDQAHDLLDEMHL 516 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~ 516 (784)
+...+...|++++|...++...+
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666554
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.01 E-value=4.7e-07 Score=95.13 Aligned_cols=278 Identities=11% Similarity=0.001 Sum_probs=178.9
Q ss_pred HHHHhhhcCChhHHHHHHHhhhhCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCChhhHHHHHHHH
Q 003946 259 ALAGCLLFETTRKAEQLLDIMPRIGVKADS----NLLIIMAHIYERNGRREELRKLQRHIDEAV--NLSDIQFRQFYNCL 332 (784)
Q Consensus 259 ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~~~~l 332 (784)
.-..+...|++++|...+++.....-..+. .+++.+...+...|++++|.+.+++..... .........+++.+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334556789999999999998765312222 256667788899999999999999876641 22221111246778
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhh
Q 003946 333 LSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKD 412 (784)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (784)
...+...|++++|...+++.......
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~------------------------------------------------------ 125 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINE------------------------------------------------------ 125 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH------------------------------------------------------
Confidence 88899999999999999988874320
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCc-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC--CH
Q 003946 413 RKFVALEAEVKRVLQTLLGMLQKQVELITTEHGIL-QP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSH--DD 488 (784)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p--~~ 488 (784)
.++. .| ....+..+...+...|++++|...+.+.........+ ..
T Consensus 126 -------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 126 -------------------------------QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp -------------------------------TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred -------------------------------hccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 0000 12 2346677888899999999999999998764311111 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHH
Q 003946 489 AALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS--SSVYA----SLLKAYIEANRPREVTALLRDARSAGIQL---DAS 559 (784)
Q Consensus 489 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~ 559 (784)
.++..+...+...|++++|...+++..+..-.++ ..... ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 5677788888899999999999998875421111 11111 23344778899999999988876432211 133
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhcCCC---CCc-HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003946 560 CYEALLQSKIVQKDTPGALHLFKEMKESKIP---RSG-HQEFEMLVKGCAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 560 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 621 (784)
.+..+...+...|++++|...+++....... +.. ...+..+..++...|+.++|...++...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4666777788888888888888776542100 111 1133344444555555555555554443
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=8.1e-09 Score=103.63 Aligned_cols=214 Identities=15% Similarity=0.062 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CC
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLA------GV-RASSSVYASLLKAYIEANRPREVTALLRDARSA------GI 554 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 554 (784)
..++..+...|...|++++|...+++..+. +- +....++..+...|...|++++|...|++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445666666666677777777776666543 11 112445566666666666666666666665432 00
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHH
Q 003946 555 QL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHD 632 (784)
Q Consensus 555 ~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~ 632 (784)
.| ...++..+...|...|++++|+..+++..+.. +.. ..+..| ...+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------------------~~~--~~~~~~~~~~~ 171 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY-----------------------------ATR--LGPDDPNVAKT 171 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-----------------------------HHH--SCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------------HHh--cCCCCHHHHHH
Confidence 01 12334444444445555555555544443320 000 000112 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCC-C-CC
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKRMRSL-------GHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTS-M-NF 703 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~-~-~p 703 (784)
+..+...|...|++++|.+.+++..+. ...|....+...+..+...++....+.. +..+.......+ . ..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 778888888888888888888887753 1223222222223323333313322222 222221111111 1 12
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 704 DEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 704 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
....+..+...|...|++++|.+++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345788899999999999999999998875
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.95 E-value=1.1e-07 Score=92.04 Aligned_cols=134 Identities=9% Similarity=-0.084 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 486 HDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALL 565 (784)
Q Consensus 486 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 565 (784)
.|...+......+...|++++|...|+...+...+++...+..+..+|...|++++|...|++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34455666666666777777777777776665433555565556666667777777777777666542 11344566666
Q ss_pred HHHHHcCChhHHHHHHHHhHhcCCCCCcH-------HHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 566 QSKIVQKDTPGALHLFKEMKESKIPRSGH-------QEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
..|...|++++|+..+++..+.. |.+. ..|..+...+...|++++|.+.|+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 66666666666666666666543 4444 2344444445555555555555555544
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.94 E-value=5e-08 Score=110.45 Aligned_cols=166 Identities=13% Similarity=0.030 Sum_probs=139.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|+.|-..|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|...|++..+.. +-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45788899999999999999999999988876 5567788889999999999999999999988864 2357888999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..+|.+.|++++|++.|++..+.. .-+...|+.+-..|...|++++|++.|++..+.. |.+...+..+...+...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhccc
Confidence 999999999999999999887763 2357788889899999999999999999888765 7778888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 003946 610 AGLMAKLLQEVKE 622 (784)
Q Consensus 610 ~~~a~~~~~~~~~ 622 (784)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776654
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.93 E-value=4.3e-08 Score=111.01 Aligned_cols=163 Identities=12% Similarity=0.047 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
..+++.|...|.+.|++++|+..|++..+.. .-+...|+.+-.+|.+.|++++|+..|++..+.. |.+..+|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4455555555555566666666655555442 1134455555555555555555555555555433 444444444444
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCC
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGK 681 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~ 681 (784)
++...|++++|.+.|++..+.++ -+...|+.+..+|...|++++|++.|++.++. .| +...|..+...+...| +
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g-~ 160 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVC-D 160 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT-C
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcc-c
Confidence 44444444444444444444221 12334444444444444444444444444442 23 2334444444444444 4
Q ss_pred HHHHHHHHHHHH
Q 003946 682 YTEVTELWGEMK 693 (784)
Q Consensus 682 ~~~a~~~~~~m~ 693 (784)
+++|.+.++++.
T Consensus 161 ~~~A~~~~~kal 172 (723)
T 4gyw_A 161 WTDYDERMKKLV 172 (723)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.93 E-value=1.4e-07 Score=91.40 Aligned_cols=202 Identities=14% Similarity=0.008 Sum_probs=156.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
..|+..|......+...|++++|...|.+..+.. .+++...+..+..++...|++++|...|+...+... .+..++.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 80 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYI 80 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHH
Confidence 5578899999999999999999999999999876 127888888889999999999999999999998642 3677899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCC--cHHHHH
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDA-------SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRS--GHQEFE 598 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ 598 (784)
.+...|...|++++|...|++..+... .+. ..|..+-..+...|++++|++.|++..+.. |. +...+.
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~ 157 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHH
Confidence 999999999999999999999987632 244 457777888889999999999999998764 66 667777
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003946 599 MLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666 (784)
Q Consensus 599 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 666 (784)
.+...+...| ..+++.+..... .+...|.... ....+.+++|+..+++..+. .|+..
T Consensus 158 ~l~~~~~~~~-----~~~~~~a~~~~~--~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 158 SLGVLFYNNG-----ADVLRKATPLAS--SNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHGGGTT--TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHH-----HHHHHHHHhccc--CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 7777776544 344555554432 2333444433 23455678888888888774 56543
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.91 E-value=6e-08 Score=98.06 Aligned_cols=241 Identities=11% Similarity=0.000 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 469 ELTHFLIKAEKENLQVSHDDAALGHVITLCISL--G-WLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTAL 545 (784)
Q Consensus 469 ~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~--g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 545 (784)
+|.+++.+..+.- ++....| .+ .+. + ++++|...|++. ...|...|++++|...
T Consensus 3 ~a~~~~~~a~k~~---~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 59 (292)
T 1qqe_A 3 DPVELLKRAEKKG---VPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDS 59 (292)
T ss_dssp CHHHHHHHHHHHS---SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHH
T ss_pred cHHHHHHHHHHHh---CcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4667777776653 3322112 22 232 2 478888887776 3457788999999988
Q ss_pred HHHHHHc----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcC----CCCCcHHHHHHHHHHHHhc-CcHHHHHH
Q 003946 546 LRDARSA----GIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESK----IPRSGHQEFEMLVKGCAQN-HEAGLMAK 615 (784)
Q Consensus 546 ~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~~ll~~~~~~-~~~~~a~~ 615 (784)
|++..+. |-.++ ..+|+.+...|...|++++|+..+++..+.. .......++..+...|... |++++|..
T Consensus 60 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~ 139 (292)
T 1qqe_A 60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID 139 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 8877542 21111 4678888888999999999998888776532 1111235788888899996 99999999
Q ss_pred HHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCCHHHH
Q 003946 616 LLQEVKEGQRIDCG----VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA------QTFHSMVTGYAAIGGKYTEV 685 (784)
Q Consensus 616 ~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~a~~~~g~~~~~a 685 (784)
.|++..+..+-..+ ..+|+.+...|.+.|++++|+..|++..+....... ..|..+..++...| ++++|
T Consensus 140 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A 218 (292)
T 1qqe_A 140 CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-DAVAA 218 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC-CHHHH
Confidence 99887764311111 356889999999999999999999999985322221 15667777888899 99999
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 003946 686 TELWGEMKSFASSTSMNFDEELLDSVLYTFV--RGGFFARANEVVAMMEE 733 (784)
Q Consensus 686 ~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~ 733 (784)
...+++..+..+...-......+..++.+|. ..+++++|.+.++++..
T Consensus 219 ~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 219 ARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 9999998763222111111223455666665 45678888888877654
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.88 E-value=3.9e-08 Score=98.53 Aligned_cols=238 Identities=14% Similarity=0.092 Sum_probs=157.0
Q ss_pred hcCChhHHHHHHHhhhh-------CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----CCChhhHHHHHHHHH
Q 003946 265 LFETTRKAEQLLDIMPR-------IGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAV----NLSDIQFRQFYNCLL 333 (784)
Q Consensus 265 ~~g~~~~A~~l~~~m~~-------~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~----~~~~~~~~~~~~~li 333 (784)
..|++++|+.+|++..+ ...+....++..+...|...|++++|...+++..+.. .++......+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666665553 2212234778889999999999999999999977642 011222223799999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhh
Q 003946 334 SCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDR 413 (784)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (784)
..|...|++++|.+.|++.......
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~------------------------------------------------------- 117 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREK------------------------------------------------------- 117 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 9999999999999999988874210
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCCCCC
Q 003946 414 KFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKE-----NLQVSHD 487 (784)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~p~ 487 (784)
. .+...| ...+|..+...|...|++++|...|.+..+. +...+..
T Consensus 118 -----------~------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 118 -----------V------------------LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp -----------H------------------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred -----------H------------------cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 0 000012 3467888999999999999999999998765 1001223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHHcCChHHHHH------HHHHHHHcC
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLA-------GVRA-SSSVYASLLKAYIEANRPREVTA------LLRDARSAG 553 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~-~~~~~~~li~~~~~~g~~~~A~~------~~~~m~~~g 553 (784)
..++..+...|...|++++|...+++..+. ...+ ....|..+...+...+....+.. .++.... .
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 247 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-D 247 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-C
Confidence 567888899999999999999999998864 1122 22333333333333333222222 2221111 0
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 554 IQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 554 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
......++..+...|...|++++|...+++..+.
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0113457888999999999999999999987753
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.78 E-value=4.2e-07 Score=79.06 Aligned_cols=128 Identities=14% Similarity=0.122 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
|..+...|...|++++|..+++++.+.. ..+...|..+...+...|++++|...++++...+ |.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 3344444444444455544444444332 1233444444444444445555555444444432 233333444444444
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 606 QNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
..|++++|.+.++.+....+ .+...+..+...|.+.|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 44444444444444433221 1334455555555555555555555555544
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.78 E-value=5e-07 Score=78.57 Aligned_cols=130 Identities=17% Similarity=0.154 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKA 532 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 532 (784)
.|..+...+...|++++|..+|.++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 45666777777777777777777777655 4456666667777777777777777777776654 2356666677777
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 533 YIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
+...|++++|...++++.+.. ..+...+..+...+...|++++|...++++.+.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777777776553 234566666677777777777777777766553
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.78 E-value=1.2e-06 Score=86.79 Aligned_cols=256 Identities=10% Similarity=0.008 Sum_probs=170.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR 538 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 538 (784)
+-.--.|.+..++.- ..+-.. ..++ ..-.-+.++|...|+++.+ ..-.|....+..+..-+ ..+
T Consensus 21 kn~fy~G~yq~~i~e---~~~~~~-~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQE---IEKFSK-VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHTTTCHHHHTHH---HHTSSC-CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHhhHHHHHHHH---HHhcCc-cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 344467888887763 332221 1233 3333455888888876642 12234544444444333 322
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 618 (784)
|...|++..+.+ .++..++..+..++...|++++|++++.+....+-.+.+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 778888877655 4666777788888999999999999999887665323677889999999999999999999999
Q ss_pred HHHhcCCCCC-----CHHHHHHHHHH--HHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Q 003946 619 EVKEGQRIDC-----GVHDWNNVIHF--FCK--KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELW 689 (784)
Q Consensus 619 ~~~~~~~~~p-----~~~~y~~li~~--~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~ 689 (784)
.|.+.. | +..+...|..+ ... .++..+|..+|+++.+. .|+..+-..++.++.+.| ++++|...+
T Consensus 161 ~~~~~~---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g-~~~eAe~~L 234 (310)
T 3mv2_B 161 NYTNAI---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQR-NIAEAQGIV 234 (310)
T ss_dssp HHHHHS---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHT-CHHHHHHHH
T ss_pred HHHhcC---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcC-CHHHHHHHH
Confidence 998753 5 23444555544 222 34899999999999775 466444455566888889 999999999
Q ss_pred HHHHhcccCC-C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 690 GEMKSFASST-S----MNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYR 744 (784)
Q Consensus 690 ~~m~~~~~~~-~----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 744 (784)
+.+.+..+.. . -+-++.+...+|......|+ +|.+++.++++. .|+.....
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i~ 290 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAFIK 290 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHHH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHHH
Confidence 9776531100 0 02356677566666666786 899999999984 56655443
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.68 E-value=9e-07 Score=89.34 Aligned_cols=194 Identities=11% Similarity=-0.019 Sum_probs=115.1
Q ss_pred HHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHH
Q 003946 498 CISLGWLDQAHDLLDEMHLA----GVRAS-SSVYASLLKAYIEANRPREVTALLRDARSAGIQ-LD----ASCYEALLQS 567 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~ 567 (784)
|...|++++|...|.+..+. |-+++ ..+|+.+..+|.+.|++++|...|++..+.... .+ ..+|+.+-..
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666666555554432 11111 345566666666666666666666655432100 01 2456666677
Q ss_pred HHHc-CChhHHHHHHHHhHhcCCCC----CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCH-----HHHHHHH
Q 003946 568 KIVQ-KDTPGALHLFKEMKESKIPR----SGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGV-----HDWNNVI 637 (784)
Q Consensus 568 ~~~~-g~~~~A~~~~~~m~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~y~~li 637 (784)
|... |++++|+..|++..+..... ....++..+...+.+.|++++|...|+...+..+-.+.. ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 7775 77777777777765532100 013457777778888888888888888877654322222 2577888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--HcCCCHHHHHHHHHHHHh
Q 003946 638 HFFCKKRLMQDAEKALKRMRSLGHLPNAQ------TFHSMVTGYA--AIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 638 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~ll~a~~--~~g~~~~~a~~~~~~m~~ 694 (784)
.+|...|++++|...|++..+ +.|+.. .+..++.+|. ..+ ++++|...|+++..
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~-~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE-QLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT-THHHHHHHHTTSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH-HHHHHHHHhccCCc
Confidence 889999999999999998876 344321 3444556664 234 67788777766543
No 92
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=7.8e-07 Score=90.55 Aligned_cols=233 Identities=14% Similarity=0.063 Sum_probs=151.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 003946 464 AGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVT 543 (784)
Q Consensus 464 ~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 543 (784)
.|++++|.+++++..+.. +.. + +...++++.|...|... ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~---~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL---KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH---CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc---ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 467788888888877643 211 0 11146777777776654 34667778888888
Q ss_pred HHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHhHhc----CCCCCcHHHHHHHHHHHHhcCcHHHHH
Q 003946 544 ALLRDARSAGIQ-LD----ASCYEALLQSKIVQKDTPGALHLFKEMKES----KIPRSGHQEFEMLVKGCAQNHEAGLMA 614 (784)
Q Consensus 544 ~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~ 614 (784)
..|.+..+.... .+ ..+|+.+...|...|++++|+..|++..+. |.......++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 888776432100 11 346777778888888888888888876543 2111123467777788877 9999999
Q ss_pred HHHHHHHhcCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCCHHHH
Q 003946 615 KLLQEVKEGQRIDC----GVHDWNNVIHFFCKKRLMQDAEKALKRMRSL----GHLPN-AQTFHSMVTGYAAIGGKYTEV 685 (784)
Q Consensus 615 ~~~~~~~~~~~~~p----~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~~a 685 (784)
..|+...+..+-.. ...+|+.+...|.+.|++++|++.|++..+. +..+. ...+..+...+...| ++++|
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA-DYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC-CHHHH
Confidence 88887665321100 1457888999999999999999999988763 21111 225566666777779 99999
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003946 686 TELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEV 727 (784)
Q Consensus 686 ~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 727 (784)
...+++.. ..+.............++.++ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999887 432211111223455566666 56787766664
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.62 E-value=2.3e-06 Score=84.64 Aligned_cols=183 Identities=11% Similarity=0.099 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 003946 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS---SSVYASLLKAYIEANRPREVTALLRDARSAGI-QLD-ASCY 561 (784)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 561 (784)
+...+-.....+.+.|++++|...|+.+.+... .+ ...+..+..+|.+.|++++|...|++..+... .|+ ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 444455566666677777777777777766531 12 45666666677777777777777777665421 111 2345
Q ss_pred HHHHHHHHH--------cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHH
Q 003946 562 EALLQSKIV--------QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDW 633 (784)
Q Consensus 562 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y 633 (784)
..+..++.. .|++++|+..|++..+.. |.+......+ ..+..+... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHHH
Confidence 555555555 666666666666666543 3322111111 111111100 01123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHh
Q 003946 634 NNVIHFFCKKRLMQDAEKALKRMRSLGHLPN----AQTFHSMVTGYAAI----------GGKYTEVTELWGEMKS 694 (784)
Q Consensus 634 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~a~~~~----------g~~~~~a~~~~~~m~~ 694 (784)
-.+...|.+.|++++|+..|++..+. .|+ ...+..+..+|... | ++++|...++++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~-~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPE-RYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccc-hHHHHHHHHHHHHH
Confidence 55666777777788887777777764 233 34555566666654 6 77777777777765
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.61 E-value=2e-06 Score=81.81 Aligned_cols=130 Identities=10% Similarity=0.068 Sum_probs=66.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+...|.+.|++++|...|++..+.. +-+...|..+...+...|++++|+..|++..+.. |.+..++..+...+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHh
Confidence 5556666666666666666665543 1245556666666666666666666666666544 555555555555554433
Q ss_pred c--HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003946 609 E--AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666 (784)
Q Consensus 609 ~--~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 666 (784)
+ ...+...++.... ..|....+..+..++...|++++|...|++..+ +.|+..
T Consensus 137 ~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 2 2233333333321 112222233334444455666666666666655 345543
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.61 E-value=4.5e-06 Score=82.57 Aligned_cols=188 Identities=7% Similarity=-0.047 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-C
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD---DAALGHVITLCISLGWLDQAHDLLDEMHLAGV-RA-S 522 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~-~ 522 (784)
..+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|...|+...+... .| .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 3466778888889999999999999999998875 233 56788888999999999999999999998632 12 2
Q ss_pred HHHHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCc
Q 003946 523 SSVYASLLKAYIE--------ANRPREVTALLRDARSAGIQLDA-SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSG 593 (784)
Q Consensus 523 ~~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 593 (784)
...+..+..++.. .|++++|...|++..+. .|+. ..+..+ ..+...... .
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~ 147 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----L 147 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----H
Confidence 5667778888888 99999999999999876 3432 222111 001100000 0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 003946 594 HQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKK----------RLMQDAEKALKRMRSL 659 (784)
Q Consensus 594 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~----------g~~~~A~~~~~~m~~~ 659 (784)
...+..+...+.+.|++++|...|+.+.+..+-.| ....+..+..+|... |++++|...|++..+.
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 11234445555566666666666666555442222 123455555555544 6666777776666653
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.61 E-value=1.4e-06 Score=87.53 Aligned_cols=167 Identities=10% Similarity=0.031 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 486 HDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALL 565 (784)
Q Consensus 486 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 565 (784)
.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...|.+.|++++|...+++.... .|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 344556667778888999999999999988764 236788888899999999999999999988665 45554333332
Q ss_pred H-HHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 003946 566 Q-SKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKR 644 (784)
Q Consensus 566 ~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g 644 (784)
. .+...++.++|+..+++..... |++...+..+...+...|++++|...|..+...++-..+...+..+...|...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2 3556777888888888887765 777778888888888888888888888888776543333667888888888888
Q ss_pred CHHHHHHHHHHHH
Q 003946 645 LMQDAEKALKRMR 657 (784)
Q Consensus 645 ~~~~A~~~~~~m~ 657 (784)
+.++|...+++-.
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888877776654
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.58 E-value=5.1e-06 Score=82.28 Aligned_cols=170 Identities=10% Similarity=0.004 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----C
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRA-----S 522 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-----~ 522 (784)
.++..++..+..++...|++++|++++.+....+. -.-+...+..++..+.+.|+.+.|.+.++.|.+. .| +
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~ 173 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGD 173 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccc
Confidence 34555556677777777788887777777655441 0134555666777777777777777777777665 34 2
Q ss_pred HHHHHHHHHHH--HHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC----C----C
Q 003946 523 SSVYASLLKAY--IEAN--RPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK----I----P 590 (784)
Q Consensus 523 ~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~----~----~ 590 (784)
..+..-|+.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.. - .
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 34444454442 2223 777777777777654 4554444445556777777777777777655421 0 2
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003946 591 RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ 624 (784)
Q Consensus 591 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 624 (784)
|.++.+...++......|+ +|.++++++.+..
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5566666555555555665 6677777777644
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.58 E-value=3.3e-06 Score=80.27 Aligned_cols=75 Identities=7% Similarity=0.015 Sum_probs=37.6
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK 642 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~ 642 (784)
+...|...|++++|+..|++..+.. |.+...+..+...+...|++++|...|+...+.++- +..+|..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD--NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHH
Confidence 4455555556666666555555543 444455555555555555555555555555443321 23344444444433
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.56 E-value=0.00015 Score=78.54 Aligned_cols=47 Identities=6% Similarity=-0.041 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003946 468 KELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA 517 (784)
Q Consensus 468 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 517 (784)
+.+..+|+++.... +.+...|...+.-+.+.|+++.|..+|+.....
T Consensus 196 ~Rv~~~ye~al~~~---p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 196 SRMHFIHNYILDSF---YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 44667888877764 555777877778788888899999999888877
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.55 E-value=5.8e-06 Score=79.65 Aligned_cols=204 Identities=9% Similarity=0.024 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH-HHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD-DAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-ASS-SVY 526 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~-~~~ 526 (784)
+...+..+...+.+.|++++|...|+++.+..+ -.|. ...+..+..++.+.|++++|...|+.+.+.... +.. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 344555666677788888888888888776542 1121 245666777777888888888888887765322 111 133
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 527 ASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
-.+..++.+.|.. .++ .|..+-..+...|+.++|+..|+++.+.. |.+..........
T Consensus 82 ~~~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l--- 139 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL--- 139 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH---
T ss_pred HHHHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH---
Confidence 3333344332210 000 11112222334566777777777776654 4433222211100
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCCH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA----QTFHSMVTGYAAIGGKY 682 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~g~~~ 682 (784)
..+...+. ...-.+...|.+.|++++|+..|+++.+. .|+. ..+..+..++.+.| ++
T Consensus 140 -------~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g-~~ 200 (225)
T 2yhc_A 140 -------VFLKDRLA---------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQ-MN 200 (225)
T ss_dssp -------HHHHHHHH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-CH
T ss_pred -------HHHHHHHH---------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcC-Cc
Confidence 00001110 11234456667777777777777777664 3432 34666666777777 77
Q ss_pred HHHHHHHHHHHhc
Q 003946 683 TEVTELWGEMKSF 695 (784)
Q Consensus 683 ~~a~~~~~~m~~~ 695 (784)
++|...++.+...
T Consensus 201 ~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 201 AQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 7777777766653
No 101
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.55 E-value=2e-05 Score=79.35 Aligned_cols=168 Identities=6% Similarity=-0.088 Sum_probs=110.1
Q ss_pred HHHHHHcCChhHHHHHHHHhHhcCCCCCcH----HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC----HHHHHHH
Q 003946 565 LQSKIVQKDTPGALHLFKEMKESKIPRSGH----QEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG----VHDWNNV 636 (784)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~y~~l 636 (784)
+..+...|++++|..++++..+.....++. ..+..+...+...+++++|...|+.........++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 344455555555555555555432111111 11223444444555666666666666553222223 3468999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHH
Q 003946 637 IHFFCKKRLMQDAEKALKRMRSL-----GHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLD 709 (784)
Q Consensus 637 i~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~ 709 (784)
...|...|++++|+..|++..+. +..|. ..+|..+...|...| ++++|...+++..+.....+..+. ..+|.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999988841 22222 347788888999999 999999999988775544444444 67899
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHh
Q 003946 710 SVLYTFVRGGF-FARANEVVAMMEE 733 (784)
Q Consensus 710 ~li~~~~~~g~-~~~A~~l~~~m~~ 733 (784)
.+...|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999888763
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.54 E-value=1.1e-06 Score=81.05 Aligned_cols=159 Identities=10% Similarity=-0.015 Sum_probs=73.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcC
Q 003946 494 VITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS-KIVQK 572 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g 572 (784)
....+.+.|++++|...|+...+.. +.+...+..+...|...|++++|...|++..+. .|+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 3444455555555555555544332 124455555555555555555555555555433 2232222111111 11111
Q ss_pred ChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003946 573 DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKA 652 (784)
Q Consensus 573 ~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~ 652 (784)
+..+|+..+++..+.. |.+...+..+...+...|++++|...|+.+.+..+..++...+..+...|...|+.++|...
T Consensus 89 ~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2223455555555433 44444555555555555555555555555544332112234455555555555555555555
Q ss_pred HHHHH
Q 003946 653 LKRMR 657 (784)
Q Consensus 653 ~~~m~ 657 (784)
|++.+
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.54 E-value=5.4e-05 Score=75.72 Aligned_cols=200 Identities=7% Similarity=0.019 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHcCCCCC
Q 003946 452 KIYIKLVKAFLEAG--KTKELTHFLIKAEKENLQVSHDDAALGHVITLC----ISL---GWLDQAHDLLDEMHLAGVRAS 522 (784)
Q Consensus 452 ~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~----~~~---g~~~~a~~~~~~m~~~g~~~~ 522 (784)
..|+.--..+...| ++++++++++.+.... +-+..+|+.--..+ ... ++++++..+++.+.+.. +-|
T Consensus 68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkn 143 (306)
T 3dra_A 68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKN 143 (306)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCC
Confidence 45555555555555 6666666666666554 33344444433333 333 55666666666666554 235
Q ss_pred HHHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------hhHHHHHHHHhHhcCCCCCcH
Q 003946 523 SSVYASLLKAYIEANRPR--EVTALLRDARSAGIQLDASCYEALLQSKIVQKD------TPGALHLFKEMKESKIPRSGH 594 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~ 594 (784)
..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.--..+...+. ++++++.++++.... |.+.
T Consensus 144 y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~--p~n~ 220 (306)
T 3dra_A 144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC--PQNP 220 (306)
T ss_dssp HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC--SSCH
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC--CCCc
Confidence 666665555555566655 66666666655542 355555555444444443 555555555555544 5555
Q ss_pred HHHHHHHHHHHhcCcHHH-HHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 595 QEFEMLVKGCAQNHEAGL-MAKLLQEVKEGQR-IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 595 ~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~-~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
..|+.+...+.+.|+... +..+.+.+.+.+. -..+...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 221 SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 221 STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 555555555555554222 2333333332110 012344555555555555555555555555543
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.53 E-value=1.3e-06 Score=99.46 Aligned_cols=173 Identities=10% Similarity=-0.059 Sum_probs=142.2
Q ss_pred HHcCChHHHHHHHHHHH--------HcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 462 LEAGKTKELTHFLIKAE--------KENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~--------~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|...|++..+.. +-+...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF---SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc---ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHH
Confidence 78899999999999988 443 4556678888899999999999999999999864 33788999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHH
Q 003946 534 IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLM 613 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 613 (784)
...|++++|...|++..+.. .-+...|..+-.+|.+.|++++ ++.|++..+.. |.+...|..+..++.+.|++++|
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998764 2366788899999999999999 99999998866 77788899999999999999999
Q ss_pred HHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCC
Q 003946 614 AKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRL 645 (784)
Q Consensus 614 ~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~ 645 (784)
.+.|+...+.+ |+ ...|..+..+|...|+
T Consensus 554 ~~~~~~al~l~---P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTS---RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTS---TTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccC---cccHHHHHHHHHHHHccCC
Confidence 99998887743 44 4567777777766554
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.52 E-value=5.8e-05 Score=75.52 Aligned_cols=234 Identities=9% Similarity=0.029 Sum_probs=143.8
Q ss_pred HHHHHcCCh-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--
Q 003946 459 KAFLEAGKT-KELTHFLIKAEKENLQVSHDDAALGHVITLCISLG--WLDQAHDLLDEMHLAGVRASSSVYASLLKAY-- 533 (784)
Q Consensus 459 ~~~~~~g~~-~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-- 533 (784)
.+..+.|.+ ++|+.++..+.... +-+...|+.--..+...| ++++++++++.+.....+ +..+|+.--..+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHH
Confidence 333444544 68999999998876 566667888777777888 899999999998887533 556666544444
Q ss_pred --HHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 534 --IEA---NRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTP--GALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 534 --~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
... +++++++.+++.+.+.. ..|...|+.---.+.+.|.++ ++++.++++.+.. |.+...|+.-...+.+
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 444 67888888888887764 347777877777777777777 7777777777765 4444444444444433
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEV 685 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a 685 (784)
.++. ++ ...++++++.++++... .| |...|+.+-..+.+.|...+.+
T Consensus 193 l~~~-----------------~~-------------~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 193 KKHL-----------------AT-------------DNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp SGGG-----------------CC-------------HHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred cccc-----------------ch-------------hhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHH
Confidence 3320 00 00155566666665553 23 4555665555555555223334
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 686 TELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 686 ~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..+.+++.+... .-..++..+..+.+.|.+.|+.++|.++++.+.+
T Consensus 241 ~~~~~~~~~~~~--~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 241 EEFSLQFVDLEK--DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTEEGGG--TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 445555443210 0123555666666666666666666666666654
No 106
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.50 E-value=0.00021 Score=77.31 Aligned_cols=357 Identities=10% Similarity=0.003 Sum_probs=214.2
Q ss_pred CChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhc---CCChhhHHHHHHHHHHHHH----h
Q 003946 267 ETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGR-REELRKLQRHIDEAV---NLSDIQFRQFYNCLLSCHL----K 338 (784)
Q Consensus 267 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~~---~~~~~~~~~~~~~li~~~~----~ 338 (784)
|+++.+..+|+..+.. .|+...|...+....+.+. .+....+|+...... ..+.. +|...+..+. .
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~----iW~~Yi~f~~~~~~~ 101 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYG----LYKEYIEEEGKIEDE 101 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHH----HHHHHHHHTSSCSSH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHH----HHHHHHHHHHhchhh
Confidence 8899999999999874 4899999998888877774 456778888877652 22322 6988888654 3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHH
Q 003946 339 FGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVAL 418 (784)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (784)
.|+++.+.++|++...........+-..+..+.
T Consensus 102 ~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE----------------------------------------------- 134 (493)
T 2uy1_A 102 QTRIEKIRNGYMRALQTPMGSLSELWKDFENFE----------------------------------------------- 134 (493)
T ss_dssp HHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-----------------------------------------------
Confidence 467788888888876521000000000000000
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 003946 419 EAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLC 498 (784)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 498 (784)
. ..+..+...++.... +.+..|..++..+...-. ..+...|...+.--
T Consensus 135 --------~--------------------~~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~--~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 135 --------L--------------------ELNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIR--GWSVKNAARLIDLE 182 (493)
T ss_dssp --------H--------------------HHCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--TCSHHHHHHHHHHH
T ss_pred --------H--------------------HhccccHHHHHHHHh--HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHH
Confidence 0 000011111111111 122333333433332110 11223344433332
Q ss_pred HHc--C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 499 ISL--G-----WLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ 571 (784)
Q Consensus 499 ~~~--g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 571 (784)
... | ..+.+..+|+...... +.+...|-..+.-+.+.|+.+.|..++++.... +.+...|. .|+..
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~ 255 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLV 255 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhh
Confidence 111 0 1356778899888753 456888988888899999999999999999887 23333332 23332
Q ss_pred CChhHHHHHHHHhHhcC---------C--CCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003946 572 KDTPGALHLFKEMKESK---------I--PRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFF 640 (784)
Q Consensus 572 g~~~~A~~~~~~m~~~~---------~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 640 (784)
.+.++. ++.+.+.- . .+.....|...+....+.++++.|..+|+.. ...+ .+...|-.....-
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE 329 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIE 329 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHH
Confidence 222222 22222211 0 0112245667777777788899999999999 3221 2334444323222
Q ss_pred HhcC-CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhc
Q 003946 641 CKKR-LMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRG 718 (784)
Q Consensus 641 ~~~g-~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~ 718 (784)
...+ +.+.|..+|+...+.- |+ ...|...+.-....| +.+.|..+|+.+.+ ....|...+..-...
T Consensus 330 ~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~-~~~~aR~l~er~~k---------~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIG-DEENARALFKRLEK---------TSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHSCC---------BHHHHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH---------HHHHHHHHHHHHHHC
Confidence 2333 6999999999998752 43 455566677667788 99999999998742 578899998888889
Q ss_pred CChHHHHHHHHHHHh
Q 003946 719 GFFARANEVVAMMEE 733 (784)
Q Consensus 719 g~~~~A~~l~~~m~~ 733 (784)
|+.+.+.++++++.+
T Consensus 398 G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 398 GSMELFRELVDQKMD 412 (493)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998888874
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.47 E-value=3.4e-06 Score=77.72 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRA-SSSVYASLLKAYIEANRPREVTALLRD 548 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 548 (784)
...+..+...+...|++++|...|+++.+....+ +...+..+...|...|+.++|...|++
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 3444444444444444444444444444432111 133444444444444444444444443
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.47 E-value=5.9e-06 Score=93.97 Aligned_cols=152 Identities=14% Similarity=0.024 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+..++.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+.. +-+...|..+
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~l 507 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLAL 507 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 55788889999999999999999999999876 5677889999999999999999999999999875 2367889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..+|.+.|++++ ...|++..+.. .-+...|..+-.++.+.|++++|++.|++..+.. |.+...+..+..++...++
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 999999999999 99999998764 3367889999999999999999999999987755 7777888888888766554
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.47 E-value=1e-05 Score=76.98 Aligned_cols=177 Identities=15% Similarity=0.027 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChHHHHH
Q 003946 469 ELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN----RPREVTA 544 (784)
Q Consensus 469 ~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~ 544 (784)
+|.+.|.+..+.| +...+..+-..|...+++++|...|+...+.| +...+..|-..|.. + +.++|..
T Consensus 4 eA~~~~~~aa~~g-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 4 EPGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp CTTHHHHHHHHTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred hHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 4566666666655 45556667777777778888888887777765 56667777777766 5 7777887
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh----cCcHHHHHHH
Q 003946 545 LLRDARSAGIQLDASCYEALLQSKIV----QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ----NHEAGLMAKL 616 (784)
Q Consensus 545 ~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~ 616 (784)
.|++..+.| +...+..|-..|.. .++.++|+..|++..+.+........+..|...|.. .+++++|..+
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 777776643 55566666666655 667777777777776655210124566666666666 6677777777
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 003946 617 LQEVKEGQRIDCGVHDWNNVIHFFCKK-R-----LMQDAEKALKRMRSLG 660 (784)
Q Consensus 617 ~~~~~~~~~~~p~~~~y~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 660 (784)
|+...+.. ++...+..|...|... | +.++|.+.|++..+.|
T Consensus 152 ~~~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77776541 2344566666666543 2 6777777777776655
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.45 E-value=6.7e-06 Score=82.56 Aligned_cols=166 Identities=11% Similarity=0.028 Sum_probs=120.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003946 286 ADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAA 365 (784)
Q Consensus 286 pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 365 (784)
.+...+..+...+.+.|++++|...|++..+..+.+.. .+..+...|.+.|++++|...|++....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~~~~~g~~~~A~~~l~~~~~~---------- 180 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE----IGLLLAETLIALNRSEDAEAVLXTIPLQ---------- 180 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH----HHHHHHHHHHHTTCHHHHHHHHTTSCGG----------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh----HHHHHHHHHHHCCCHHHHHHHHHhCchh----------
Confidence 34456667777888888899998888888876555544 5888888888888888888888766542
Q ss_pred hchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcC
Q 003946 366 AMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHG 445 (784)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (784)
T Consensus 181 -------------------------------------------------------------------------------- 180 (287)
T 3qou_A 181 -------------------------------------------------------------------------------- 180 (287)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH
Q 003946 446 ILQPTEKIYI-KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-ASS 523 (784)
Q Consensus 446 ~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~ 523 (784)
.|+..... .....+.+.++.++|...|++..... +.+...+..+...+...|++++|...|..+.+.... .+.
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 33333222 22233566777778888888887776 566777888888888888888888888888876422 125
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
..+..+...|...|+.++|...|++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 678888888888888888887777654
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.45 E-value=1.5e-05 Score=76.78 Aligned_cols=170 Identities=7% Similarity=-0.029 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD-AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
...+..+..+|.+.|++++|+..|++..+..+ -.+.. ..+..+..++...|.. .+ ..|..+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~~~g~~~~~~~~~-----~~------------~~~~~~ 102 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMYMRGLTNMALDDS-----AL------------QGFFGV 102 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHHHHHHHHHhhhhh-----hh------------hhhhcc
Confidence 35788889999999999999999999988752 12221 1333344444433210 11 112223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDAS-CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
...+...|+.++|...|+++.+. .|+.. .+.+.... ..+...+ ......+...+.+.|
T Consensus 103 ~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~---------~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 103 DRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL---------AKYEYSVAEYYTERG 161 (225)
T ss_dssp -----CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH---------HHHHHHHHHHHHHHT
T ss_pred chhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH---------HHHHHHHHHHHHHcC
Confidence 33444567788888888888765 34322 22111100 0000000 112234456677777
Q ss_pred cHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 609 EAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
++++|...|+.+.+..+-.|. ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 888888888877776532221 246777888888888888888888887775
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.45 E-value=7.1e-06 Score=91.51 Aligned_cols=155 Identities=10% Similarity=-0.028 Sum_probs=105.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 003946 464 AGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVT 543 (784)
Q Consensus 464 ~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 543 (784)
.|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 367788888888877655 4556777788888888888888888888887764 235777888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc---CcHHHHHHHHHHH
Q 003946 544 ALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN---HEAGLMAKLLQEV 620 (784)
Q Consensus 544 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~ 620 (784)
..+++..+.. ..+...|..+...|...|++++|++.+++..+.. |.+...+..+...+... |+.++|.+.++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888887663 2356778888888888888888888888877765 66677778888888888 8888888888877
Q ss_pred HhcCC
Q 003946 621 KEGQR 625 (784)
Q Consensus 621 ~~~~~ 625 (784)
.+.++
T Consensus 155 l~~~p 159 (568)
T 2vsy_A 155 VAQGV 159 (568)
T ss_dssp HHHTC
T ss_pred HhcCC
Confidence 77553
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.43 E-value=2.4e-05 Score=74.44 Aligned_cols=163 Identities=9% Similarity=-0.052 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhcCCCCCCHHHH
Q 003946 558 ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH----EAGLMAKLLQEVKEGQRIDCGVHDW 633 (784)
Q Consensus 558 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~~~y 633 (784)
...+..+-..|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|+...+.+ +...+
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g----~~~a~ 88 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG----SKSGE 88 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 3333444444444444444444444444332 12333334444433 3 4555555555544332 34456
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcccCCCCCCC
Q 003946 634 NNVIHFFCK----KRLMQDAEKALKRMRSLGHL-PNAQTFHSMVTGYAA----IGGKYTEVTELWGEMKSFASSTSMNFD 704 (784)
Q Consensus 634 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~~----~g~~~~~a~~~~~~m~~~~~~~~~~p~ 704 (784)
..|...|.. .+++++|++.|++..+.|.. .+...+..|-..|.. .+ ++++|...+++..+ . ..+
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~----~--~~~ 161 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSS----L--SRT 161 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHH----T--SCT
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHH----c--CCC
Confidence 666666655 66777777777777765421 015666666666766 56 77888888877765 2 224
Q ss_pred HHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 003946 705 EELLDSVLYTFVRG-G-----FFARANEVVAMMEEGKM 736 (784)
Q Consensus 705 ~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g~ 736 (784)
...+..|...|... | ++++|.+++++..+.|.
T Consensus 162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 44566666776653 2 77888888888777664
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.41 E-value=1.5e-05 Score=80.94 Aligned_cols=199 Identities=10% Similarity=-0.005 Sum_probs=126.3
Q ss_pred cCChhHHHHHHHhhhhC------CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCChhhHHHHHHHHH
Q 003946 266 FETTRKAEQLLDIMPRI------GVKADS----NLLIIMAHIYERNGRREELRKLQRHIDEAV--NLSDIQFRQFYNCLL 333 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~------g~~pd~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~~~~li 333 (784)
.|++++|.+++++..+. +..++. ..|......|...|++++|...|....+.. ..+......+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777776655431 112332 356666777888899999998888766541 111111122688888
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhh
Q 003946 334 SCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDR 413 (784)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (784)
.+|.+.|++++|+..|++..+... ..
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~-----------------------------------------------~~------- 109 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYV-----------------------------------------------EN------- 109 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHH-----------------------------------------------TT-------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHH-----------------------------------------------Hc-------
Confidence 888889999999998887766321 00
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CC--CHHH
Q 003946 414 KFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQV-SH--DDAA 490 (784)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~p--~~~~ 490 (784)
+....-..+++.+...|.. |++++|+..|++........ .+ ...+
T Consensus 110 -------------------------------g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 110 -------------------------------GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------------CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 0000012467777778877 99999998888876432000 01 1356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLA----GVRAS-SSVYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
+..+...|.+.|++++|...|++..+. +..++ ...+..+...+...|++++|...|++..
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777788888888888888888877753 11111 2255666667777788888888888876
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.41 E-value=1.5e-06 Score=77.65 Aligned_cols=141 Identities=6% Similarity=-0.093 Sum_probs=87.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003946 461 FLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPR 540 (784)
Q Consensus 461 ~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 540 (784)
+...|++++|+..+....... +-+...+..+-..|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 344566677777776654332 2223334456677777777777777777777664 235677777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 541 EVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHL-FKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+|...|++..+.. +-+...|..+...|.+.|+.++|.+. +++..+.. |.++.+|......+...|
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 7777777776653 12456677777777777777665544 46655543 555555555544444443
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.38 E-value=9.7e-06 Score=90.42 Aligned_cols=154 Identities=8% Similarity=-0.060 Sum_probs=119.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 003946 501 LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHL 580 (784)
Q Consensus 501 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 580 (784)
.|++++|...|++..+.. +.+...+..+...|.+.|++++|...|++..+.. ..+...|..+...|...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 3368899999999999999999999999998764 23678899999999999999999999
Q ss_pred HHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 003946 581 FKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK---RLMQDAEKALKRMR 657 (784)
Q Consensus 581 ~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~---g~~~~A~~~~~~m~ 657 (784)
+++..+.. |.+...+..+...+.+.|++++|.+.|+...+..+ .+...+..+...|... |+.++|.+.+++..
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99998875 77788999999999999999999999999988653 2567789999999999 99999999999998
Q ss_pred hCC
Q 003946 658 SLG 660 (784)
Q Consensus 658 ~~g 660 (784)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 863
No 117
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.36 E-value=2.8e-06 Score=75.81 Aligned_cols=56 Identities=9% Similarity=-0.111 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003946 293 IMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEM 352 (784)
Q Consensus 293 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 352 (784)
.+...|.+.|++++|.+.|+...+.++.+.. +|..+..+|.+.|++++|+..|++.
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQERDPK----AHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCchHHHHHHHHHH
Confidence 3334444444444444444444333222222 2444444444444444444444333
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.36 E-value=5.5e-05 Score=76.15 Aligned_cols=130 Identities=6% Similarity=-0.031 Sum_probs=87.4
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCC--CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHH
Q 003946 602 KGCAQNHEAGLMAKLLQEVKEGQRI--DCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSL-GHLPN-----AQTFHSM 671 (784)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~--~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~l 671 (784)
..+...|++++|...++...+.... .+. ..+|+.+...|...|++++|+..+++..+. ...|+ ..+|..+
T Consensus 123 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nl 202 (293)
T 2qfc_A 123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp HHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhH
Confidence 3344445555555555554432111 111 447888899999999999999999888732 01222 2577888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 003946 672 VTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRGGFFARA-NEVVAMME 732 (784)
Q Consensus 672 l~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A-~~l~~~m~ 732 (784)
...|...| ++++|...+++..+.....+.... ..+|..+...|.+.|++++| ...+++..
T Consensus 203 g~~y~~~~-~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 203 AKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 88899999 999999999987764332222222 56788899999999999999 77677654
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.35 E-value=3e-05 Score=78.07 Aligned_cols=170 Identities=7% Similarity=-0.013 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCC---CC-cHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLDA-----SCYEALLQSKIVQKDTPGALHLFKEMKESKIP---RS-GHQ 595 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~-~~~ 595 (784)
.+...+..+...|++++|...+++..+.....+. ..+..+...+...|++++|+..+++..+.... +. ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445566777788888888887776654321111 12333445556677888888888877653211 11 134
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHH---hcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC-H
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVK---EGQRIDC--GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLG----HLPN-A 665 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~ 665 (784)
+++.+...|...|++++|...|++.. +..+..+ ...+|+.+...|...|++++|++.+++..+.. .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77788888888888888888888776 2221111 12578899999999999999999999876531 1111 5
Q ss_pred HHHHHHHHHHHHcCCCHHHH-HHHHHHHHhc
Q 003946 666 QTFHSMVTGYAAIGGKYTEV-TELWGEMKSF 695 (784)
Q Consensus 666 ~~~~~ll~a~~~~g~~~~~a-~~~~~~m~~~ 695 (784)
.+|..+...|...| ++++| ...+++....
T Consensus 237 ~~~~~lg~~y~~~g-~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLE-YEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CcHHHHHHHHHHHHHH
Confidence 67888888999999 99999 7778776653
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.30 E-value=2.1e-05 Score=71.16 Aligned_cols=58 Identities=14% Similarity=0.017 Sum_probs=23.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
.+...+...|++++|...|++..+.. ..+...|..+...+...|++++|+..+++..+
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 75 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE 75 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444443321 11333344444444444444444444444333
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.29 E-value=3.1e-05 Score=73.59 Aligned_cols=125 Identities=13% Similarity=-0.001 Sum_probs=70.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+...+...|++++|...|++.. .|+...|..+...|...|++++|+..|++..+.. |.+...+..+...+...|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcc
Confidence 3444445555555555554442 3444555555555555555555555555554433 444445555555555555
Q ss_pred cHHHHHHHHHHHHhcCCCC-------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 609 EAGLMAKLLQEVKEGQRID-------------C-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~-------------p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
++++|.+.|+...+..+-. | ....|..+..+|.+.|++++|.+.|++..+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555555432211 1 2256777788888888888888888888764
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.26 E-value=3.8e-05 Score=72.91 Aligned_cols=127 Identities=11% Similarity=-0.074 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003946 493 HVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQK 572 (784)
Q Consensus 493 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 572 (784)
.+...+...|++++|...|++. +.|+..++..+...|.+.|++++|...|++..+.. ..+...|..+...|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3444455555555555555544 23455555555556666666666666665555442 224455555555666666
Q ss_pred ChhHHHHHHHHhHhcC--------------CCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003946 573 DTPGALHLFKEMKESK--------------IPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ 624 (784)
Q Consensus 573 ~~~~A~~~~~~m~~~~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 624 (784)
++++|+..|++..+.. ..|.....+..+...+.+.|++++|.+.|+...+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 6666666666555532 112233566677777777777777777777776643
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.26 E-value=0.00038 Score=70.38 Aligned_cols=152 Identities=7% Similarity=-0.058 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHcCCCCCHHHH
Q 003946 450 TEKIYIKLVKAFLEAG-KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISL-G-WLDQAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~~g~~~~~~~~ 526 (784)
+..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-...+.+. + +++++.++++.+.+... -|..+|
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n---PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW 162 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN---LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTW 162 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHH
Confidence 4456776666666677 4888888888888776 56666777777666666 6 77888888888887653 377777
Q ss_pred HHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------hhHHHHHHHHhHhcCCCC
Q 003946 527 ASLLKAYIEANRPR--------EVTALLRDARSAGIQLDASCYEALLQSKIVQKD-------TPGALHLFKEMKESKIPR 591 (784)
Q Consensus 527 ~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~ 591 (784)
+--.-.+.+.|..+ ++++.++++.+... -|...|+.--..+.+.+. ++++++.++++.... |
T Consensus 163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--P 239 (349)
T 3q7a_A 163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--P 239 (349)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--C
Confidence 76655555555555 77888888777653 377777777777666665 567777777776654 6
Q ss_pred CcHHHHHHHHHHHHhcC
Q 003946 592 SGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 592 ~~~~~~~~ll~~~~~~~ 608 (784)
.+...|+.+-..+.+.|
T Consensus 240 ~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 240 HNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 66667766666555555
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.23 E-value=0.00086 Score=67.78 Aligned_cols=148 Identities=11% Similarity=0.004 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLG-WLDQAHDLLDEMHLAGVRASSSVYASLLKA 532 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 532 (784)
++.+-....+.+..++|++++.++.... +-+..+|+.--..+...| .++++..+++.+..... -+..+|+.--..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wl 132 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 3333333444455578999999999887 566677887777777788 59999999999988753 378888887777
Q ss_pred HHHc-C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--------HHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 533 YIEA-N-RPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTP--------GALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 533 ~~~~-g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
+.+. + ++++++.+++.+.+.. ..|...|+.-.-.+.+.|..+ ++++.++++.+.. |.+..+|+....
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~ 209 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWY 209 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 7776 6 7888888888888764 347777776655555545444 6666666666654 444545555554
Q ss_pred HHHhcC
Q 003946 603 GCAQNH 608 (784)
Q Consensus 603 ~~~~~~ 608 (784)
.+.+.+
T Consensus 210 lL~~l~ 215 (349)
T 3q7a_A 210 LRVSRP 215 (349)
T ss_dssp HHTTST
T ss_pred HHHhcc
Confidence 444444
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.21 E-value=7.3e-05 Score=63.41 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|..+...+...|++++|.+.|.++.+.. +.+..++..+...+...|++++|..+|+.+.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 3455555555556666666666665555543 3344455555555555555555555555555442 22444555555
Q ss_pred HHHHHcCChHHHHHHHHHHHHc
Q 003946 531 KAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
..|...|++++|...|+++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555555443
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.21 E-value=8.7e-05 Score=62.93 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 567 (784)
...+..+...+...|++++|...|+++.+.. +.+..++..+...|.+.|++++|..+|+++.+.. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678888899999999999999999998874 3478899999999999999999999999998764 3477889999999
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+...|++++|...++++.+.. |.+...+..+...+...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcc
Confidence 999999999999999998865 666777777777665543
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.20 E-value=7.9e-05 Score=67.23 Aligned_cols=129 Identities=9% Similarity=-0.032 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
..|..+...+...|++++|...|.+..... +.+..++..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 567778888889999999999999988776 5567778888888889999999999999888764 346778888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCChhHHHHHHHHhH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEA--LLQSKIVQKDTPGALHLFKEMK 585 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--li~~~~~~g~~~~A~~~~~~m~ 585 (784)
.|...|++++|...|++..+... .+...+.. ....+...|++++|+..+....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88889999999999988876532 24444433 3333666777888887776543
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.17 E-value=2.5e-05 Score=73.49 Aligned_cols=103 Identities=9% Similarity=-0.035 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC
Q 003946 630 VHDWNNVIHFFCKKRLMQDAEKALKRMRSL----GHLP--NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF 703 (784)
Q Consensus 630 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p 703 (784)
..++..+...|...|++++|.+.+++..+. +-.| ....+..+...+...| ++++|...+++..+.....+..+
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchH
Confidence 345666667777777777777777665542 1111 1234556666677777 77777777777654322222111
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 704 -DEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 704 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
...++..+...+...|++++|.+.+++..+
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 123456677777777777777777766653
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.14 E-value=0.00011 Score=73.96 Aligned_cols=129 Identities=8% Similarity=-0.063 Sum_probs=76.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHH
Q 003946 456 KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDA----ALGHVITLCISLGWLDQAHDLLDEMHLAGVR-AS----SSVY 526 (784)
Q Consensus 456 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~ 526 (784)
..+..+...|++++|..++.+...... ..|+.. .+..+...+...|++++|...|++..+.... ++ ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 345667777888888888877765431 122221 2223445555666777777777777763222 22 3357
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003946 527 ASLLKAYIEANRPREVTALLRDARS----A-GIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMK 585 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~ 585 (784)
+.+...|...|++++|...|++..+ . +..+. ..+|..+...|.+.|++++|+..+++..
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7777777777777777777777653 1 11111 1255666666666666666666666554
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.10 E-value=4.7e-05 Score=71.50 Aligned_cols=122 Identities=10% Similarity=-0.031 Sum_probs=72.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHc
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA----GVR-ASSSVYASLLKAYIEA 536 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~ 536 (784)
...|++++|.+.++.... . ......++..+...+...|++++|...+++..+. +.. ....++..+...|...
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-H--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT-S--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcC-C--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 356777777775544432 2 1334556777777777788888888777776652 111 1245566677777777
Q ss_pred CChHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 537 NRPREVTALLRDARSA----GIQL--DASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 537 g~~~~A~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
|++++|...+++..+. +-.| ....+..+...+...|++++|...+++...
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777777765432 1011 123456666666677777777777766543
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.10 E-value=0.00014 Score=62.16 Aligned_cols=120 Identities=14% Similarity=0.062 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+...|++++|...|.+..... +.+...+..+...+...|++++|...++...+.. +.+...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN---PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence 44677778888888888888888888887765 4566777778888888888888888888887763 3357777778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDT 574 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 574 (784)
...|.+.|++++|...|++..+.. ..+...+..+...+...|+.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888876653 23556666666666665543
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.09 E-value=0.00013 Score=62.57 Aligned_cols=97 Identities=10% Similarity=0.000 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
..|......|.+.|++++|+..|.+..+.. +.+..+|..+..++.+.|++++|...|+...+.. +.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 455555566666666666666666655554 4455555555566666666666666666655543 224555555555
Q ss_pred HHHHcCChHHHHHHHHHHHHc
Q 003946 532 AYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+|...|++++|...|++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 555666666666665555543
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.07 E-value=3.4e-05 Score=77.08 Aligned_cols=194 Identities=10% Similarity=0.007 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 522 SSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 522 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
+...+..+...+.+.|++++|...|++..+.. ..+...|..+...|...|++++|+..+++..+.. |.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34455555666666666666666666665542 1255566666666666666666666666665543 55566666666
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCC
Q 003946 602 KGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGK 681 (784)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 681 (784)
.++...|++++|...|+...+..+-.+. .+...+....+ ..++.. +.........++...... +..+. .| +
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~-l~~l~-~~-~ 150 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSY-LTRLI-AA-E 150 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHH-HHHHH-HH-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHH-HHHHH-HH-H
Confidence 6666666666666666665543211110 11111111111 111111 112222223334333333 33333 46 7
Q ss_pred HHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 003946 682 YTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRG-GFFARANEVVAMMEE 733 (784)
Q Consensus 682 ~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~l~~~m~~ 733 (784)
+++|.+.+++..+ ..|+ ......+...+.+. +++++|.++|.+..+
T Consensus 151 ~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 151 RERELEECQRNHE------GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHTTTSGGGT------TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhhhc------cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888777776655 2344 33344444445554 567788888877764
No 134
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=0.002 Score=64.70 Aligned_cols=222 Identities=9% Similarity=-0.010 Sum_probs=161.3
Q ss_pred HHHHcCChH-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 460 AFLEAGKTK-ELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW----------LDQAHDLLDEMHLAGVRASSSVYAS 528 (784)
Q Consensus 460 ~~~~~g~~~-~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~ 528 (784)
...+.|.++ +|+.++..+...+ +-+..+|+.--..+...+. ++++..+++.+.... +-+..+|+.
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 334666665 7999999999876 4455556654444433333 678899999998875 348888988
Q ss_pred HHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 529 LLKAYIEANR--PREVTALLRDARSAGIQLDASCYEALLQSKIVQKD-TPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 529 li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
-...+.+.|+ +++++.+++.+.+.. ..|...|+.---.+...|. ++++++.++++.+.. |.+..+|+.....+.
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 8888888884 889999999998876 3588889888888888887 589999999999876 777888888777776
Q ss_pred hc--------------CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCC
Q 003946 606 QN--------------HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK-----------RLMQDAEKALKRMRSLG 660 (784)
Q Consensus 606 ~~--------------~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~-----------g~~~~A~~~~~~m~~~g 660 (784)
+. +.++++.+.++......+ -|...|+-+-..+.+. +.++++++.++++.+
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P--~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle-- 266 (331)
T 3dss_A 191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP--NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE-- 266 (331)
T ss_dssp HHSCCC------CCCHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--
T ss_pred HhhhccccccccccchHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--
Confidence 65 457888888888887553 2667777666666655 457889999999887
Q ss_pred CCCCHHHHHHHHHH-----HHHcCCCHHHHHHHHHHHHh
Q 003946 661 HLPNAQTFHSMVTG-----YAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 661 ~~p~~~~~~~ll~a-----~~~~g~~~~~a~~~~~~m~~ 694 (784)
+.||. .|..+-.+ ....+ ..+++...+.++.+
T Consensus 267 ~~pd~-~w~l~~~~~~~~~~~~~~-~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 267 LEPEN-KWCLLTIILLMRALDPLL-YEKETLQYFSTLKA 303 (331)
T ss_dssp HCTTC-HHHHHHHHHHHHHHCTTT-THHHHHHHHHHHHH
T ss_pred hCccc-chHHHHHHHHHHhhcccc-cHHHHHHHHHHHHH
Confidence 46764 34322222 12345 67777888888776
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.07 E-value=0.00014 Score=62.27 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHh
Q 003946 560 CYEALLQSKIVQKDTPGALHLFKEM 584 (784)
Q Consensus 560 t~~~li~~~~~~g~~~~A~~~~~~m 584 (784)
.|..+..+|.+.|++++|+..|++.
T Consensus 49 ~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 49 LYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHH
Confidence 3333333333333333333333333
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.06 E-value=5.7e-05 Score=73.74 Aligned_cols=192 Identities=7% Similarity=-0.122 Sum_probs=133.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCCC-------------
Q 003946 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHV-------ITLCISLGWLDQAHDLLDEMHLAGVRAS------------- 522 (784)
Q Consensus 463 ~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~~~------------- 522 (784)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..++...+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccc
Confidence 6899999999999999887 5566667766 3455554444444444433332 2221
Q ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCC-
Q 003946 523 ---------SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRS- 592 (784)
Q Consensus 523 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~- 592 (784)
...+-.+...+...|++++|.++|+.+... .|+......+-..+.+.+++++|+..|+...... ++
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~ 168 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKF 168 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--Ccc
Confidence 233445677888999999999999988765 3555466666667888999999999998554422 11
Q ss_pred -cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003946 593 -GHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666 (784)
Q Consensus 593 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 666 (784)
....+..+..++...|++++|+..|++..... ..|. .........++.+.|+.++|..+|+++... .|+..
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~ 242 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPK 242 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH
Confidence 13367778888888889999998888887432 2243 235666777788888888999888888874 56633
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.05 E-value=3.1e-05 Score=68.70 Aligned_cols=95 Identities=11% Similarity=-0.057 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
.+..+...+.+.|++++|...|++..+.. ..+...|..+-.+|...|++++|+..|++..... |.+...+..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHH
Confidence 33444444555555555555555544432 1244444444445555555555555555544433 33344444444444
Q ss_pred HhcCcHHHHHHHHHHHHh
Q 003946 605 AQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~ 622 (784)
...|++++|.+.|+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.03 E-value=6.6e-05 Score=66.62 Aligned_cols=94 Identities=6% Similarity=-0.156 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003946 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFF 640 (784)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 640 (784)
+..+-..+.+.|++++|+..|++..... |.+...|..+..+|...|++++|...|+...+.++- +...|..+..+|
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~~~~~~lg~~~ 114 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHH
Confidence 3333334444444444444444444332 333444444444444444444444444444333221 223344444444
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 003946 641 CKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 641 ~~~g~~~~A~~~~~~m~~ 658 (784)
.+.|++++|.+.|++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444444
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.03 E-value=0.00015 Score=61.98 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 567 (784)
...+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++..+.. ..+...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3345555556666666666666666665543 2245556666666666666666666666655442 2234555555556
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+...|++++|...|++..+.. |.+...+..+...+...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHh
Confidence 666666666666666555543 333444444444444333
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.03 E-value=9.9e-05 Score=67.67 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=73.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCh-
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKA-YIEANRP- 539 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~- 539 (784)
...|++++|...+.+..+.. +.+...+..+...|...|++++|...|+...+.. +.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 46667777777777766654 4555666666677777777777777777766543 2255566666666 5566666
Q ss_pred -HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 540 -REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 540 -~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
++|...|++..+.. ..+...+..+...|...|++++|+..|++..+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 67777776666543 2245556666666666666666666666666543
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.02 E-value=0.00031 Score=68.61 Aligned_cols=198 Identities=7% Similarity=-0.077 Sum_probs=123.7
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHhHh------------cCCC-----
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEAL-------LQSKIVQKDTPGALHLFKEMKE------------SKIP----- 590 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~~~~----- 590 (784)
..++...|.+.|.+..+.. +-....|+.+ ...+...++..+++..+..-.. .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 3566666666666665542 1234455555 3444444444444444443332 1100
Q ss_pred --CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---
Q 003946 591 --RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA--- 665 (784)
Q Consensus 591 --~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 665 (784)
..-....-.+...+...|++++|.++|+.+...+ |+....-.+...+.+.|++++|+..|+..... |+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccH
Confidence 0112234455666777788888888887776543 43335555666788899999999999755432 322
Q ss_pred -HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 003946 666 -QTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD--EELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYK 742 (784)
Q Consensus 666 -~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 742 (784)
..+..+-.++...| ++++|+..|++... ....|. .........++.+.|+.++|..+|+++... .|+...
T Consensus 171 ~~a~~~LG~al~~LG-~~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~ 243 (282)
T 4f3v_A 171 GAAGVAHGVAAANLA-LFTEAERRLTEAND----SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKV 243 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHhc----CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHH
Confidence 35667778888888 99999999998875 233243 446677788888999999999999999884 577444
Q ss_pred HHHH
Q 003946 743 YRTL 746 (784)
Q Consensus 743 ~~~l 746 (784)
+..|
T Consensus 244 ~~aL 247 (282)
T 4f3v_A 244 AAAL 247 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.01 E-value=0.00013 Score=62.87 Aligned_cols=23 Identities=4% Similarity=-0.048 Sum_probs=8.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 003946 527 ASLLKAYIEANRPREVTALLRDA 549 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m 549 (784)
..+...+...|++++|...|++.
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~a 42 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEA 42 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333333
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.01 E-value=4.2e-05 Score=76.41 Aligned_cols=191 Identities=9% Similarity=-0.012 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIV 570 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 570 (784)
+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...+++..+.. ..+...+..+..+|..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444444444555554444444432 1134444444444555555555555555444332 1233444444445555
Q ss_pred cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003946 571 QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAE 650 (784)
Q Consensus 571 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 650 (784)
.|++++|+..|++..+.. |.+...+...+....+ ...+.......... ..++......+.. + ..|+.++|+
T Consensus 85 ~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRWNSIEERR--IHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp TTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHHHHHHHTC--CCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHHHHHHHHH--HhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 555555555554443321 1100001111111110 00111111111111 2233333333322 2 268888898
Q ss_pred HHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 651 KALKRMRSLGHLPNAQTFH-SMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 651 ~~~~~m~~~g~~p~~~~~~-~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+.+++..+. .|+..... .+-..+...++.+++|.++|+++.+
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888877763 56654433 3333344442278889999988765
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.01 E-value=0.00013 Score=74.96 Aligned_cols=87 Identities=8% Similarity=-0.062 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
..|..+..+|.+.|++++|+..+++..+.. |.+...+..+..+|...|++++|...|+...+..+ .+...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 445555555555555555555555555433 44444444444444445555555554444444321 12334555555
Q ss_pred HHHhcCCHHHH
Q 003946 639 FFCKKRLMQDA 649 (784)
Q Consensus 639 ~~~~~g~~~~A 649 (784)
++.+.|+.++|
T Consensus 273 ~~~~~~~~~~a 283 (336)
T 1p5q_A 273 CQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.01 E-value=0.00011 Score=65.09 Aligned_cols=99 Identities=10% Similarity=-0.010 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|+...+... -+...|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHH
Confidence 33456666666667777777777777766655 45566666666666677777777777776666542 245566666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc
Q 003946 530 LKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
..+|.+.|++++|...|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66777777777777777766654
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.00 E-value=0.00015 Score=62.36 Aligned_cols=118 Identities=10% Similarity=-0.016 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 449 PTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYAS 528 (784)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 528 (784)
.+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 356788888888899999999999999888765 4567778888888888888888888888888764 336778888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ 571 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 571 (784)
+...|.+.|++++|...|++..+... .+...+..+...+...
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHh
Confidence 88888888888888888888766521 1334455555554443
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.99 E-value=0.00015 Score=66.40 Aligned_cols=127 Identities=14% Similarity=0.047 Sum_probs=90.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCh--h
Q 003946 499 ISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS-KIVQKDT--P 575 (784)
Q Consensus 499 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~--~ 575 (784)
...|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.. ..+...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34577778888887777654 3467778888888888888888888888876653 2356667777777 6677887 8
Q ss_pred HHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC
Q 003946 576 GALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG 629 (784)
Q Consensus 576 ~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 629 (784)
+|+..+++..+.. |.+...+..+...+...|++++|...|+...+..+..++
T Consensus 99 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888888887765 666777888888888888888888888888776543333
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.95 E-value=0.00022 Score=73.24 Aligned_cols=138 Identities=9% Similarity=-0.049 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...|.+.|++++|...|.+..... +.+.. + ..+.+.++ .. ....+|..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-~-----------~~~~~~~~----~~----~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL---EYESS-F-----------SNEEAQKA----QA----LRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCCC-C-----------CSHHHHHH----HH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh---hcccc-C-----------ChHHHHHH----HH----HHHHHHHHH
Confidence 45677777778888888888888888877654 12200 0 00000000 00 012344445
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..+|.+.|++++|...|++..+.. ..+...|..+..+|...|++++|+..|++..+.. |.+...+..+...+.+.|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
Confidence 555555555555555555554432 1244455555555555555555555555555433 4445555555555555555
Q ss_pred HHHH
Q 003946 610 AGLM 613 (784)
Q Consensus 610 ~~~a 613 (784)
.+++
T Consensus 280 ~~~a 283 (336)
T 1p5q_A 280 QLAR 283 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.92 E-value=0.00017 Score=61.87 Aligned_cols=102 Identities=14% Similarity=0.031 Sum_probs=47.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-C----HHHHHHHH
Q 003946 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-G----VHDWNNVI 637 (784)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~----~~~y~~li 637 (784)
.+-..+.+.|++++|++.|++..+.. |.+...|..+..+|.+.|++++|.+.++...+..+-.+ + ..+|..+.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33334444444444444444444332 33344444444444444444444444444333211000 0 12455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003946 638 HFFCKKRLMQDAEKALKRMRSLGHLPNAQTF 668 (784)
Q Consensus 638 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 668 (784)
..|...|++++|++.|++.+. ..||....
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 666667777777777766655 24554443
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.92 E-value=0.0002 Score=64.64 Aligned_cols=94 Identities=9% Similarity=-0.104 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
+..+...|.+.|++++|...|++..+.. .-+...|..+..+|...|++++|+..|++..+.. |.+...|..+..++.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3334444444444444444444443332 1133344444444444444444444444444332 333444444444444
Q ss_pred hcCcHHHHHHHHHHHHh
Q 003946 606 QNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~ 622 (784)
..|++++|.+.|+...+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 44444444444444443
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.92 E-value=4e-05 Score=67.99 Aligned_cols=96 Identities=9% Similarity=-0.101 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
..+..+...+...|++++|+..|++..... |.+...|..+..+|...|++++|...|+......+- +...|..+..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~ 97 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CchHHHHHHH
Confidence 345555666666777777777777666654 555666666666666666666666666666654321 3445566666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 003946 639 FFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 639 ~~~~~g~~~~A~~~~~~m~~ 658 (784)
+|...|++++|.+.|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666654
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00037 Score=59.47 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=38.5
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK 643 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 643 (784)
+-..+.+.|++++|+..|++..+.. |.+...|..+..++.+.|++++|...++...+.++ .+...|..+..+|...
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHH
Confidence 3333444444444444444444332 33333444444444444444444444444333221 1233444444455555
Q ss_pred CCHHHHHHHHHHHHh
Q 003946 644 RLMQDAEKALKRMRS 658 (784)
Q Consensus 644 g~~~~A~~~~~~m~~ 658 (784)
|++++|.+.|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555544443
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.86 E-value=4.6e-05 Score=71.49 Aligned_cols=132 Identities=9% Similarity=-0.041 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG--------------VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--------------~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 661 (784)
.+..+...+...|++++|...|+......+..|+ ...|..+..+|.+.|++++|+..+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444444555555555555555555443222121 2567788888888888888888888887752
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhC
Q 003946 662 LPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARAN-EVVAMMEEG 734 (784)
Q Consensus 662 ~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~ 734 (784)
..+...|..+..+|...| ++++|...+++..+.. +-+...+..+...+...|+.+++. ..+..|...
T Consensus 119 p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFG-FLEEAKENLYKAASLN-----PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 235677777888888888 8888888888887631 125667777777777777766665 455555443
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.85 E-value=0.00079 Score=56.11 Aligned_cols=90 Identities=12% Similarity=-0.007 Sum_probs=36.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 494 VITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD 573 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 573 (784)
+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++..+.. ..+...+..+...+...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh
Confidence 3333444444444444444443332 1133334444444444444444444444443331 1123334444444444444
Q ss_pred hhHHHHHHHHhH
Q 003946 574 TPGALHLFKEMK 585 (784)
Q Consensus 574 ~~~A~~~~~~m~ 585 (784)
+++|...+++..
T Consensus 88 ~~~A~~~~~~~~ 99 (118)
T 1elw_A 88 FEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.85 E-value=0.00027 Score=61.96 Aligned_cols=90 Identities=9% Similarity=-0.099 Sum_probs=38.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+...+.+.|++++|...|++..+.. +.+...|..+-.+|...|++++|+..|++..... |.++..+..+..++...|
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcC
Confidence 3334444444444444444443332 1233344444444444444444444444444432 333334444444444444
Q ss_pred cHHHHHHHHHHHH
Q 003946 609 EAGLMAKLLQEVK 621 (784)
Q Consensus 609 ~~~~a~~~~~~~~ 621 (784)
++++|.+.|+...
T Consensus 101 ~~~~A~~~~~~al 113 (142)
T 2xcb_A 101 DLDGAESGFYSAR 113 (142)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444433
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.84 E-value=0.00048 Score=59.68 Aligned_cols=98 Identities=11% Similarity=-0.022 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 594 HQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVT 673 (784)
Q Consensus 594 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 673 (784)
...+..+...+...|++++|...|+......+ .+...|..+...|...|++++|...+++..+.. +.+...|..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34444444444445555555555444444322 134455555666666666666666666655531 113455555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHhc
Q 003946 674 GYAAIGGKYTEVTELWGEMKSF 695 (784)
Q Consensus 674 a~~~~g~~~~~a~~~~~~m~~~ 695 (784)
++...| ++++|...+++..+.
T Consensus 86 ~~~~~~-~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEME-SYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHh-hHHHHHHHHHHHHHH
Confidence 666666 666666666655553
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00041 Score=74.05 Aligned_cols=102 Identities=9% Similarity=-0.050 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC
Q 003946 630 VHDWNNVIHFFCKKRLMQDAEKALKRMRSL----GHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD 704 (784)
Q Consensus 630 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~ 704 (784)
..++..+...|...|++++|..++++.... +-+|. ...|..++..|...| ++++|..++++...........|.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR-NLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHhhcCCCchH
Confidence 345667777777777777777777766542 11221 345666777777777 888887777776553322222111
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 705 --EELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 705 --~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
...+..+...+...|++++|.+.+.+..
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2456666677777777777777666554
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.84 E-value=0.00084 Score=55.93 Aligned_cols=99 Identities=12% Similarity=-0.030 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|..+...+...|++++|...|.+..... +.+...+..+...+...|++++|...++...+.. +.+...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 3567788889999999999999999998876 5677888889999999999999999999999874 33688899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcC
Q 003946 531 KAYIEANRPREVTALLRDARSAG 553 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g 553 (784)
.+|...|++++|...+++..+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999998763
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.0007 Score=57.69 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
..|..+...+.+.|++++|+..|.+..+.. +.+...|..+..++.+.|++++|...|+...+.. +.+...|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 456667777778888888888888877765 5566777777788888888888888888877764 235677777777
Q ss_pred HHHHcCChHHHHHHHHHHHHc
Q 003946 532 AYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888777654
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.82 E-value=5.8e-05 Score=70.82 Aligned_cols=95 Identities=7% Similarity=-0.103 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAGVR-AS--------------SSVYASLLKAYIEANRPREVTALLRDARSAGIQ 555 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 555 (784)
+..+...+.+.|++++|...|++..+.... |+ ..++..+..+|.+.|++++|...+++..+.. .
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 444444555555555555555555543211 00 1344444444444444444444444444332 1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 556 LDASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 556 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
.+...|..+..+|...|++++|+..|++..+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2333444444444444444444444444433
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.80 E-value=0.033 Score=55.90 Aligned_cols=117 Identities=6% Similarity=-0.129 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHH
Q 003946 449 PTEKIYIKLVKAFLEAG--KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW-LDQAHDLLDEMHLAGVRASSSV 525 (784)
Q Consensus 449 p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~ 525 (784)
-+..+|+--...+...+ .+++++.++.++.... +-+...|+.-.-.+...|. ++++.+.++.+.+..+ -|...
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SA 181 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSS 181 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHH
Confidence 36678887777777777 4789999999998887 6778888888777778887 6889999999888764 37888
Q ss_pred HHHHHHHHHHc--------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 526 YASLLKAYIEA--------------NRPREVTALLRDARSAGIQLDASCYEALLQSKIV 570 (784)
Q Consensus 526 ~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 570 (784)
|+.....+.+. +.++++++.+....... +-|...|+-+-..+.+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 88776666655 34666777777766553 2355666554444443
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.01 Score=63.05 Aligned_cols=205 Identities=11% Similarity=0.036 Sum_probs=142.0
Q ss_pred HHhhhcCChhHHHHHHHhhhhCCCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCChh
Q 003946 261 AGCLLFETTRKAEQLLDIMPRIGVKADS----------------NLLIIMAHIYERNGRREELRKLQRHIDEAV-NLSDI 323 (784)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------------~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~~ 323 (784)
..+.+.|++++|++.|....+..-.... ..+..+...|.+.|++++|.+.+..+.+.. .....
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4456789999999999998865321111 247788999999999999999998876641 21111
Q ss_pred h-HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccc
Q 003946 324 Q-FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENH 402 (784)
Q Consensus 324 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (784)
. ...+.+.+-..+...|+.++|..++........
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------------------- 126 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK--------------------------------------------- 126 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 1 111344455555667899999999988776432
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003946 403 ILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKEN 481 (784)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 481 (784)
..+..+ -..++..+...|...|++++|..++.+....-
T Consensus 127 -----------------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 127 -----------------------------------------REKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp -----------------------------------------HSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------HhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 000111 23577889999999999999999999876532
Q ss_pred C--CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 482 L--QVSH-DDAALGHVITLCISLGWLDQAHDLLDEMHLA--GVRAS----SSVYASLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 482 ~--~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
. .-.+ ...++..++..|...|++++|..+++..... .+..+ ...+..+...+...|++++|...|.+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 0112 2346888889999999999999999887643 12212 34566677777888999999988877743
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.78 E-value=0.00039 Score=59.42 Aligned_cols=109 Identities=9% Similarity=0.114 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV--RAS----SSV 525 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~ 525 (784)
..|..+...+...|++++|...|.+..... +.+...+..+...+...|++++|...++...+... .++ ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 456777778888888888888888887765 55667777788888888888888888888776531 122 667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALL 565 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 565 (784)
+..+...|.+.|++++|...|++..+. .|+...+..+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 777778888888888888888887765 35554444443
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.76 E-value=0.00073 Score=57.82 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG--VRAS----SSV 525 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~ 525 (784)
..+..+-..+.+.|++++|+..|.+..+.. +-+...|..+..+|.+.|++++|.+.++...+.. ..++ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 567778888888999999999998888776 5667778888888888999999988888877542 1112 235
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
|..+..+|...|++++|+..|++..+. .||....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666777788888888888888887654 4555443
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.75 E-value=0.00063 Score=58.05 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=46.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC-CCC----HHHHHHHH
Q 003946 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI-DCG----VHDWNNVI 637 (784)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~----~~~y~~li 637 (784)
.+...+...|++++|+..|++..+.. |.+...+..+...+...|++++|...++......+. .++ ...|..+.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 33333444444444444444443332 233333334444444444444444444433332110 011 44556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003946 638 HFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHS 670 (784)
Q Consensus 638 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 670 (784)
..|...|++++|.+.|++..+. .|+...+..
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 117 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKK 117 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 6666666666666666666653 345444333
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.73 E-value=0.00029 Score=58.24 Aligned_cols=55 Identities=16% Similarity=0.053 Sum_probs=21.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 495 ITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 495 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
...+...|++++|...|+...+.. +.+...+..+...|...|++++|...|++..
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 333334444444444444433332 1123333333333444444444444444333
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.69 E-value=0.0011 Score=57.18 Aligned_cols=100 Identities=15% Similarity=-0.013 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
..+...|..+...+...|++++|...|.+..... +.+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHH
Confidence 3456677777777777777777777777776665 4456667777777777777777777777777654 23566677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 003946 528 SLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
.+..+|...|++++|...|++..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777776654
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.69 E-value=0.00034 Score=62.41 Aligned_cols=136 Identities=13% Similarity=-0.006 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHH
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG----VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH-LPN----AQT 667 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~ 667 (784)
+..+...+...|++++|...++...+.....++ ..++..+...|...|++++|.+.+++..+..- .++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444455555555544443322110011 24678888888899999999998888765310 011 446
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 668 FHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 668 ~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
+..+...+...| ++++|...+++..+.....+..+ ....+..+...|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667777888888 99999999988776433322222 245678888999999999999999988764
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=0.0013 Score=57.49 Aligned_cols=97 Identities=8% Similarity=-0.123 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS----SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYE 562 (784)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 562 (784)
+...+..+...+...|++++|...|++..+.. |+ ...+..+...|...|++++|...+++..+.. ..+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34444445555555555555555555555432 33 3444445555555555555555555544432 11334444
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHh
Q 003946 563 ALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
.+..++...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444455555555555554444
No 170
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.67 E-value=0.00074 Score=59.09 Aligned_cols=99 Identities=14% Similarity=-0.014 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...+..+...+.+.|++++|...|.+..... +.+...|..+..++.+.|++++|...|+...+.. +.+...+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 33456666777788888888888888887766 5567777777788888888888888888887764 2356677777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc
Q 003946 530 LKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
..+|...|++++|...|++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 78888888888888888877654
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.65 E-value=0.00032 Score=59.51 Aligned_cols=98 Identities=9% Similarity=-0.082 Sum_probs=82.5
Q ss_pred hhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 003946 254 NTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLL 333 (784)
Q Consensus 254 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li 333 (784)
..+..+-..+.+.|++++|+..|+...+.. +.+...+..+..++.+.|++++|...|+...+.++.+.. .|..+.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~----~~~~la 92 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA----VHAALA 92 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHH
Confidence 346666778889999999999999998854 336678888999999999999999999999987665554 599999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHH
Q 003946 334 SCHLKFGDLNSASKMVLEMLQRA 356 (784)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~ 356 (784)
.+|.+.|++++|+..|++..+.+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999887643
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.64 E-value=0.00046 Score=57.00 Aligned_cols=100 Identities=14% Similarity=0.012 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRA--SSSVYA 527 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~ 527 (784)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 44567788888999999999999999998876 5677888899999999999999999999999864 33 588899
Q ss_pred HHHHHHHHc-CChHHHHHHHHHHHHcC
Q 003946 528 SLLKAYIEA-NRPREVTALLRDARSAG 553 (784)
Q Consensus 528 ~li~~~~~~-g~~~~A~~~~~~m~~~g 553 (784)
.+...|.+. |++++|.+.+++..+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999999 99999999999998764
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=0.0017 Score=56.79 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD----DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASS 523 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 523 (784)
..+...|..+...+...|++++|...|++..+.. |+ ...+..+...|...|++++|...++...+.. +.+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 99 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDV 99 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCH
Confidence 4477899999999999999999999999998764 55 5778888889999999999999999988864 3368
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
..+..+..+|...|++++|...|++..+.
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88889999999999999999999999876
No 174
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.61 E-value=0.0011 Score=59.76 Aligned_cols=99 Identities=9% Similarity=-0.002 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+.+.|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|...|+...+.. +.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45677778888888888888888888888765 4567778888888888888888888888888764 2357778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc
Q 003946 530 LKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
..+|...|++++|...|++..+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 88888888888888888887654
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.60 E-value=9.6e-05 Score=62.35 Aligned_cols=59 Identities=8% Similarity=-0.129 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003946 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 621 (784)
|..+...|...|++++|+..|++..+.. |.+...+..+..++.+.|++++|...|+...
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444444332 3333333334444444444444444443333
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.58 E-value=0.0034 Score=55.63 Aligned_cols=67 Identities=12% Similarity=-0.027 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003946 289 NLLIIMAHIYERNGRREELRKLQRHIDEAV--NLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
.++..+...|...|++++|.+.+++..+.. ..+......++..+...|...|++++|.+.+++..+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 78 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL 78 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455666666777777777777776655431 1111111125777888888888888888888877663
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.57 E-value=0.00085 Score=56.83 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=5.6
Q ss_pred HcCChHHHHHHHHHH
Q 003946 535 EANRPREVTALLRDA 549 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m 549 (784)
+.|++++|...|++.
T Consensus 29 ~~g~~~~A~~~~~~a 43 (121)
T 1hxi_A 29 KLANLAEAALAFEAV 43 (121)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 333333333333333
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.48 E-value=0.00065 Score=73.31 Aligned_cols=89 Identities=10% Similarity=-0.053 Sum_probs=45.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
.|.+.|++++|...|++..+.. ..+...|..+..+|.+.|++++|++.+++..+.. |.+..++..+..+|.+.|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 3445555666666666555442 1234555555555555555555555555555543 444444444444444455555
Q ss_pred HHHHHHHHHHhc
Q 003946 612 LMAKLLQEVKEG 623 (784)
Q Consensus 612 ~a~~~~~~~~~~ 623 (784)
+|.+.|++..+.
T Consensus 92 eA~~~~~~al~~ 103 (477)
T 1wao_1 92 AALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555544444443
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.43 E-value=0.00049 Score=74.28 Aligned_cols=120 Identities=8% Similarity=-0.056 Sum_probs=90.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003946 495 ITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDT 574 (784)
Q Consensus 495 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 574 (784)
...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...+++..+.. ..+...|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 345667899999999999999874 3368899999999999999999999999998874 33678899999999999999
Q ss_pred hHHHHHHHHhHhcCCCCCcHHHHHHHHHH--HHhcCcHHHHHHHHH
Q 003946 575 PGALHLFKEMKESKIPRSGHQEFEMLVKG--CAQNHEAGLMAKLLQ 618 (784)
Q Consensus 575 ~~A~~~~~~m~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 618 (784)
++|++.|++..+.. |.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999998865 4444344444333 455555555555544
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.43 E-value=0.0018 Score=69.49 Aligned_cols=88 Identities=7% Similarity=-0.053 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
..|..+..+|.+.|++++|+..+++..+.. |.+...|..+..+|...|++++|...|+...+..+- +...|..+..
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~l~~ 393 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--NKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Confidence 344444555555555555555555554433 344444444444444444444444444444443211 2223444555
Q ss_pred HHHhcCCHHHHH
Q 003946 639 FFCKKRLMQDAE 650 (784)
Q Consensus 639 ~~~~~g~~~~A~ 650 (784)
++.+.|+.+++.
T Consensus 394 ~~~~~~~~~~a~ 405 (457)
T 1kt0_A 394 CQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.42 E-value=0.0025 Score=54.24 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=21.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 497 LCISLGWLDQAHDLLDEMHLAGVRASS---SVYASLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 497 ~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
.+...|++++|...|+...+.... +. ..+..+..+|.+.|++++|...|++..+
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444444444444433211 11 2333344444444444444444444433
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.37 E-value=0.0064 Score=51.60 Aligned_cols=94 Identities=10% Similarity=0.017 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD---AALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS---SSVYAS 528 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ 528 (784)
..+...+.+.|++++|...|.+..+.. +.+. ..+..+..++.+.|++++|...|+...+.... + ...+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 345667889999999999999998865 2233 46777888999999999999999999986422 3 677888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 003946 529 LLKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+..+|.+.|++++|...|++..+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 899999999999999999999876
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.32 E-value=0.0032 Score=67.53 Aligned_cols=139 Identities=8% Similarity=-0.031 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
....|..+...+.+.|++++|+..|.+..+... -.++. .-+... +.... ...+|..+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~--------------~~~~~~----~~~~~----~~~~~~nl 323 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE-MEYGL--------------SEKESK----ASESF----LLAAFLNL 323 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TCCSC--------------CHHHHH----HHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccC--------------ChHHHH----HHHHH----HHHHHHHH
Confidence 345777788888888888888888888876541 11110 000000 00000 13445555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..+|.+.|++++|+..+++..+.. ..+...|..+-.+|...|++++|+..|++..+.. |.+...+..+...+.+.++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence 555555566666665555555442 2244555555555666666666666666555533 4444555555555555555
Q ss_pred HHHHH
Q 003946 610 AGLMA 614 (784)
Q Consensus 610 ~~~a~ 614 (784)
.+++.
T Consensus 401 ~~~a~ 405 (457)
T 1kt0_A 401 HNERD 405 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.28 E-value=0.0038 Score=55.87 Aligned_cols=62 Identities=10% Similarity=-0.008 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 595 QEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 595 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
..|..+..+|.+.|++++|...++...+.++ .+...|..+..+|...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3444444444444555555544444444321 1334455555555555555555555555544
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.25 E-value=0.00074 Score=56.75 Aligned_cols=88 Identities=7% Similarity=0.094 Sum_probs=70.5
Q ss_pred hcCChhHHHHHHHhhhhCCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCCh
Q 003946 265 LFETTRKAEQLLDIMPRIGV--KADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDL 342 (784)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 342 (784)
..|++++|+..|++.++.+. +-+...+..+..+|.+.|++++|.+.|++..+..+.+.. ++..+..+|.+.|++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA----LRVFYAMVLYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH----HHHHHHHHHHHcCCH
Confidence 46889999999999988641 223477888999999999999999999999987555544 689999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 003946 343 NSASKMVLEMLQRA 356 (784)
Q Consensus 343 ~~A~~~~~~m~~~~ 356 (784)
++|...|++.....
T Consensus 78 ~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 78 EQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988764
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.23 E-value=0.0031 Score=65.33 Aligned_cols=87 Identities=17% Similarity=0.075 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
..|..+..+|.+.|++++|+..+++..+.. |.+...+..+..+|...|++++|.+.|+...+..+ .+...+..+..
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--~~~~~~~~l~~ 349 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 445555555555555555555555555432 44444444444444445555555544444444321 12333444444
Q ss_pred HHHhcCCHHHH
Q 003946 639 FFCKKRLMQDA 649 (784)
Q Consensus 639 ~~~~~g~~~~A 649 (784)
.+...++.+++
T Consensus 350 ~~~~~~~~~~a 360 (370)
T 1ihg_A 350 VKQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.19 E-value=0.0064 Score=54.33 Aligned_cols=101 Identities=13% Similarity=0.017 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKE-------NLQV--------SHDDAALGHVITLCISLGWLDQAHDLLDEMH 515 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 515 (784)
...+......+.+.|++++|+..|.+.... ..+. +.+...|..+..+|.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 356778888999999999999999998765 1000 1223456666677777777777777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 516 LAGVRASSSVYASLLKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 516 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 235667777777777777777777777776654
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.16 E-value=0.0047 Score=64.01 Aligned_cols=138 Identities=9% Similarity=-0.078 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|..+...+.+.|++++|+..|++..+.- +... .....+.+.. . -+.+..+|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~----~~~~----------~~~~~~~~~~-------~-~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV----EGSR----------AAAEDADGAK-------L-QPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHH----------HHSCHHHHGG-------G-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hcCc----------cccChHHHHH-------H-HHHHHHHHHHHH
Confidence 3457777778888888888888888776521 0000 0000000000 0 001234555555
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcH
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEA 610 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 610 (784)
.+|.+.|++++|...+++..+.. ..+...|..+..+|...|++++|+..|++..+.. |.+...+..+...+...++.
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665542 1244555556666666666666666666655543 44455555555555555444
Q ss_pred HHH
Q 003946 611 GLM 613 (784)
Q Consensus 611 ~~a 613 (784)
+++
T Consensus 358 ~~a 360 (370)
T 1ihg_A 358 KDK 360 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.13 E-value=0.0076 Score=52.91 Aligned_cols=92 Identities=14% Similarity=0.020 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHHcCChhHHHHHHHHhHhc-----C
Q 003946 527 ASLLKAYIEANRPREVTALLRDARSAGIQLD-------------ASCYEALLQSKIVQKDTPGALHLFKEMKES-----K 588 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 588 (784)
......+.+.|++++|...|++..+. .|+ ...|+.+-.++.+.|++++|+..+++..+. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 33444455556666666666655443 222 125555555666666666666665555543 1
Q ss_pred CCCCcHHHH----HHHHHHHHhcCcHHHHHHHHHHH
Q 003946 589 IPRSGHQEF----EMLVKGCAQNHEAGLMAKLLQEV 620 (784)
Q Consensus 589 ~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~ 620 (784)
+.|++...| .....++...|++++|...|+..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 124444444 44444444444444444444443
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.12 E-value=0.041 Score=60.43 Aligned_cols=177 Identities=8% Similarity=-0.045 Sum_probs=135.2
Q ss_pred HHcCCh-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 462 LEAGKT-KELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW----------LDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 462 ~~~g~~-~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
.+.|.+ ++|++.++++.... +-+...|+.--..+.+.|+ ++++.+.++.+.+... -+..+|+.-.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~ 114 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRC 114 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344444 67899999999876 5566678777777777777 8999999999998764 3788898888
Q ss_pred HHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 531 KAYIEAN--RPREVTALLRDARSAGIQLDASCYEALLQSKIVQK-DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 531 ~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
..+.+.| +++++...++++.+.. ..|...|+.--..+.+.| ..+++++.++++.+.. |.+..+|+.....+.+.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhh
Confidence 8888888 6699999999998876 348888988888888888 8899999999988765 77788888877777664
Q ss_pred --------------CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 608 --------------HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 608 --------------~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
+.++++.+.++.....++ -|...|+-+-..+.+.++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P--~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDP--NDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS--SCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCCcc
Confidence 456777777777766543 25566777777776666633
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.08 E-value=0.0015 Score=66.86 Aligned_cols=61 Identities=10% Similarity=0.004 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 560 CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 560 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
.|..+..+|.+.|++++|+..+++..+.. |.+...|..+..+|...|++++|...|+...+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555556666666666666666655543 44455555555555555555555555555544
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.01 E-value=0.0036 Score=67.15 Aligned_cols=102 Identities=9% Similarity=-0.033 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCC
Q 003946 630 VHDWNNVIHFFCKKRLMQDAEKALKRMRSL-----G-HLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMN 702 (784)
Q Consensus 630 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~ 702 (784)
..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|...|...| ++++|..++++..+.... -+.
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G-~~~eA~~~~~~Al~i~~~-~lG 428 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAG-HIEVGHGMICKAYAILLV-THG 428 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH-HhC
Confidence 457888888999999999998888887653 2 2232 457888888899989 999999988877653221 122
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 703 FD----EELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 703 p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
|+ ..+.+.+-.++...|++++|..++.++.+
T Consensus 429 ~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 429 PSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 34566777888888999999999999875
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.99 E-value=0.0033 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=8.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRD 548 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~ 548 (784)
+..+...|...|++++|...|++
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~ 44 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRA 44 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHH
Confidence 33333333333333333333333
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.97 E-value=0.048 Score=59.87 Aligned_cols=155 Identities=11% Similarity=-0.039 Sum_probs=126.2
Q ss_pred CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc
Q 003946 450 TEKIYIKLVKAFLEAGK----------TKELTHFLIKAEKENLQVSHDDAALGHVITLCISLG--WLDQAHDLLDEMHLA 517 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~ 517 (784)
+...|+.--.++...|+ ++++++.++++.+.. +-+..+|..-...+.+.| +++++.+.++.+.+.
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 34566666566666666 899999999999887 677888998888888999 779999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------------CChhHHHHHHH
Q 003946 518 GVRASSSVYASLLKAYIEAN-RPREVTALLRDARSAGIQLDASCYEALLQSKIVQ--------------KDTPGALHLFK 582 (784)
Q Consensus 518 g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~--------------g~~~~A~~~~~ 582 (784)
... |..+|+.-...+.+.| ..+++.+.++++.+..+ -|...|+.....+... +.++++++.++
T Consensus 139 d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~ 216 (567)
T 1dce_A 139 DER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ 216 (567)
T ss_dssp CTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHH
T ss_pred ccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHH
Confidence 644 8999999888888889 89999999999987753 4788888887777763 45688999999
Q ss_pred HhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 583 EMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 583 ~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
+..... |.+...|..+-..+.+.++.+
T Consensus 217 ~ai~~~--P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 217 NAFFTD--PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHC--SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHhhC--CCCccHHHHHHHHHhcCCCcc
Confidence 888765 888889999888888877633
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.94 E-value=0.016 Score=62.02 Aligned_cols=93 Identities=11% Similarity=-0.011 Sum_probs=73.0
Q ss_pred hhhcCChhHHHHHHHhhhhC---CCCC---Ch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCChhhHHHHHHH
Q 003946 263 CLLFETTRKAEQLLDIMPRI---GVKA---DS-NLLIIMAHIYERNGRREELRKLQRHIDEA----VNLSDIQFRQFYNC 331 (784)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~---g~~p---d~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~~~~~~~~~~~~ 331 (784)
+-..|++++|+.++++.++. -+.| +. .+++.|..+|...|++++|..++++..+. -+++.+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44689999999999887642 1223 22 67899999999999999999999886543 34444444458999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
|...|...|++++|+.++++..+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988874
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.88 E-value=0.014 Score=51.12 Aligned_cols=75 Identities=8% Similarity=0.057 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-HHHH----HHHHHHHHHcCCCHHHHHHHHHHHHhcccC-CC
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRSL-----GHLPN-AQTF----HSMVTGYAAIGGKYTEVTELWGEMKSFASS-TS 700 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~----~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~-~~ 700 (784)
.|+.+..++.+.|++++|+..+++.++. .+.|+ ...| ...-.++...| ++++|+..|++..+..+. .+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lg-r~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHH
Confidence 6788888888888888888888877763 12675 4566 77777888888 888888888887765432 34
Q ss_pred CCCCHHH
Q 003946 701 MNFDEEL 707 (784)
Q Consensus 701 ~~p~~~~ 707 (784)
+.+....
T Consensus 138 ~~~~~~~ 144 (159)
T 2hr2_A 138 ETPGKER 144 (159)
T ss_dssp CCTTHHH
T ss_pred HHHHHHH
Confidence 4444433
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.84 E-value=0.032 Score=48.20 Aligned_cols=111 Identities=14% Similarity=0.036 Sum_probs=78.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChH
Q 003946 465 GKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE----ANRPR 540 (784)
Q Consensus 465 g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~ 540 (784)
+++++|.+.|++..+.+ .|+.. +-..|...+.+++|.+.|+...+.| +...+..|-..|.. .++.+
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 45677888888877776 45543 4455556667777888888877765 66777777777777 67788
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHhcC
Q 003946 541 EVTALLRDARSAGIQLDASCYEALLQSKIV----QKDTPGALHLFKEMKESK 588 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 588 (784)
+|...|++..+.| +...+..|-..|.. .++.++|+..|++..+.|
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888888777654 55666666666666 677777777777777665
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.83 E-value=0.0031 Score=64.51 Aligned_cols=148 Identities=9% Similarity=-0.053 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
....|..+...+.+.|++++|...|.+..... |+... +...|+.+++...+ . ..+|..+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nl 236 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM----GDDFM-------FQLYGKYQDMALAV---K-------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS----CHHHH-------HTCCHHHHHHHHHH---H-------THHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----ccchh-------hhhcccHHHHHHHH---H-------HHHHHHH
Confidence 34567778888889999999999999987654 44432 12223333333222 1 1377788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH-hcC
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA-QNH 608 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~-~~~ 608 (784)
..+|.+.|++++|...+++..+.. ..+...|..+..+|...|++++|+..|++..+.. |.+...+..+..... ..+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
Confidence 888889999999999999887763 2367788888889999999999999998876643 544444443333311 223
Q ss_pred cHHHHHHHHHHHH
Q 003946 609 EAGLMAKLLQEVK 621 (784)
Q Consensus 609 ~~~~a~~~~~~~~ 621 (784)
..+.+.++|..+.
T Consensus 314 ~~~~a~~~~~~~l 326 (338)
T 2if4_A 314 LYQKQKEMYKGIF 326 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhh
Confidence 3344444444443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.81 E-value=0.013 Score=50.71 Aligned_cols=109 Identities=9% Similarity=-0.025 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh----cCcHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ----NHEAGLMA 614 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 614 (784)
+++|...|++..+.| .|+.. |-..|...+.+++|++.|++..+.| +...+..|...|.. .+++++|.
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 444444444444443 22222 2233333334444444444444433 12334444444443 34444444
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 003946 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCK----KRLMQDAEKALKRMRSLG 660 (784)
Q Consensus 615 ~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~g 660 (784)
++|+...+.+ +...+..|-..|.. .++.++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 4444444432 33445555555555 555555555555555544
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.72 E-value=0.018 Score=47.71 Aligned_cols=82 Identities=15% Similarity=0.066 Sum_probs=66.8
Q ss_pred hHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHH
Q 003946 270 RKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMV 349 (784)
Q Consensus 270 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 349 (784)
+.|+..|+...+.. +.+...+..+...|.+.|++++|...|+...+..+.... .|..+..+|.+.|++++|...|
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV----AWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH----HHHHHHHHHHHcCCHHHHHHHH
Confidence 35677788877653 335678888999999999999999999999887555444 5899999999999999999999
Q ss_pred HHHHHHH
Q 003946 350 LEMLQRA 356 (784)
Q Consensus 350 ~~m~~~~ 356 (784)
++..+..
T Consensus 77 ~~al~~~ 83 (115)
T 2kat_A 77 ESGLAAA 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9887743
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0014 Score=53.99 Aligned_cols=24 Identities=13% Similarity=-0.083 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 634 NNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 634 ~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
..+..+|.+.|++++|++.+++..
T Consensus 42 ~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 42 SNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333333333333333333333333
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.65 E-value=0.021 Score=44.54 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
+..+...|...|++++|...|++..+.. ..+...|..+...+...|++++|+..+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333444444444444444444443321 11333344444444444444444444444433
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.58 E-value=0.033 Score=43.44 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|..+...+...|++++|...|.+..+.. +.+..++..+...+.+.|++++|...|++..+.. +.+...+..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4566677777777888888888887777665 4456667777777777777777777777777653 22455555555
Q ss_pred HHHHH
Q 003946 531 KAYIE 535 (784)
Q Consensus 531 ~~~~~ 535 (784)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.57 E-value=0.0082 Score=48.49 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
.+..+...|.+.|++++|...|++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al 34 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELV 34 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333334444444444444444333
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.012 Score=48.26 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA 517 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 517 (784)
..|..+...+...|++++|...|.+..+.. +.+...+..+..++.+.|++++|...++...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 445555566666666666666666665554 344555555666666666666666666666554
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.50 E-value=0.033 Score=56.16 Aligned_cols=63 Identities=10% Similarity=-0.069 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 629 GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 629 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+..+|..+...+...|++++|...+++.+..+ |+...|..+-..+.-.| ++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G-~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKG-MNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHh
Confidence 44555555555555566666666666666643 55555555555555556 66666666666554
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.41 E-value=0.0092 Score=52.25 Aligned_cols=58 Identities=5% Similarity=-0.068 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 611 GLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK-----------RLMQDAEKALKRMRSLGHLPNAQTFHSMV 672 (784)
Q Consensus 611 ~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 672 (784)
++|+..|++..+.++- +...|..+..+|... |++++|++.|++.++ +.|+...|...+
T Consensus 63 ~eAi~~le~AL~ldP~--~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 63 QEAITKFEEALLIDPK--KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 3555555555543321 234455555555544 367777777777776 456655554433
No 208
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.38 E-value=0.22 Score=41.28 Aligned_cols=139 Identities=11% Similarity=0.078 Sum_probs=93.5
Q ss_pred HcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003946 570 VQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDA 649 (784)
Q Consensus 570 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 649 (784)
-.|.+++..++..+.... .+..-|+-++--....-+.+-..+.++.+-.-..+ ..+|++...
T Consensus 19 ldG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 346677777777766653 33445666665555566666666666666655432 334455544
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003946 650 EKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVA 729 (784)
Q Consensus 650 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 729 (784)
...+-.+- .+..-+...++.+...| +-|.-.++...+.. +.+|++...-.+..+|.+-|+..+|.+++.
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~-KkDqLdki~~~~l~-----n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQG-KRDKLEEIGREILK-----NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTT-CHHHHHHHHHHHC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhc-cHhHHHHHHHHHhc-----cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 44443332 24455667778888888 88888888888643 466788888889999999999999999999
Q ss_pred HHHhCCCC
Q 003946 730 MMEEGKMF 737 (784)
Q Consensus 730 ~m~~~g~~ 737 (784)
+..++|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99988874
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.23 E-value=0.023 Score=49.78 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=38.3
Q ss_pred hhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 003946 574 TPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN-----------HEAGLMAKLLQEVKEGQRIDCGVHDWNNVI 637 (784)
Q Consensus 574 ~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~~~~y~~li 637 (784)
+++|+..|++..+.. |....+|..+..+|... |++++|.+.|++..+. .|+-..|..-+
T Consensus 62 ~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al 131 (158)
T 1zu2_A 62 IQEAITKFEEALLID--PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 446677777666654 66666777777777665 3788888888888774 35554444333
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.22 E-value=0.053 Score=43.51 Aligned_cols=65 Identities=11% Similarity=-0.068 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003946 287 DSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 287 d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
+...+..+...|.+.|++++|.+.|+...+.++.... .|..+..+|.+.|++++|.+.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG----TYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455666666777777777777777776665444333 4677777777777777777777766653
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.90 E-value=0.05 Score=57.17 Aligned_cols=92 Identities=5% Similarity=0.034 Sum_probs=72.5
Q ss_pred hcCChhHHHHHHHhhhhC---CCCCC---h-hHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCChhhHHHHHHHHH
Q 003946 265 LFETTRKAEQLLDIMPRI---GVKAD---S-NLLIIMAHIYERNGRREELRKLQRHIDEA----VNLSDIQFRQFYNCLL 333 (784)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~---g~~pd---~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~~~~~~~~~~~~li 333 (784)
..|++++|+.++++.++. -+.|+ . .+++.|..+|...|++++|..++++..+. .+++.+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999887642 22233 2 77899999999999999999999886543 3444444445899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHH
Q 003946 334 SCHLKFGDLNSASKMVLEMLQRA 356 (784)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~ 356 (784)
..|...|++++|+.++++..+.-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999999999988753
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.70 E-value=0.14 Score=51.63 Aligned_cols=74 Identities=8% Similarity=0.003 Sum_probs=58.6
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 591 RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 591 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
|.+..+|..+...+...|++++|...++.....+ |+...|..+-..+.-.|++++|.+.|++... +.|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 6667777777777777788888888888888754 6777787888888889999999999988887 468777764
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.56 E-value=0.093 Score=55.19 Aligned_cols=96 Identities=8% Similarity=-0.063 Sum_probs=70.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC--CCCCCC-HH
Q 003946 637 IHFFCKKRLMQDAEKALKRMRSLG---HLPN----AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS--TSMNFD-EE 706 (784)
Q Consensus 637 i~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~--~~~~p~-~~ 706 (784)
+..+.+.|++++|++++++.++.. +.|+ ..+++.+..+|...| ++++|+.++++....... ..-.|+ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g-~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG-LLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 344566788888888888887642 2232 457888888899999 999999999887653221 112233 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 707 LLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 707 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
+++.|...|...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 689999999999999999999988764
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.54 E-value=0.093 Score=55.19 Aligned_cols=98 Identities=10% Similarity=-0.128 Sum_probs=77.0
Q ss_pred HHHHhhhcCChhHHHHHHHhhhhC---CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCChhhHHH
Q 003946 259 ALAGCLLFETTRKAEQLLDIMPRI---GVKADS----NLLIIMAHIYERNGRREELRKLQRHIDEA----VNLSDIQFRQ 327 (784)
Q Consensus 259 ll~~~~~~g~~~~A~~l~~~m~~~---g~~pd~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~~~~~~~~ 327 (784)
.+..+.+.|++++|+.++++.++. -+.|+. .+++.|..+|...|++++|..++++..+. .++..+....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345566789999999999988743 122332 67889999999999999999999886543 3444444455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 003946 328 FYNCLLSCHLKFGDLNSASKMVLEMLQRA 356 (784)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 356 (784)
+++.|...|...|++++|+.++++..+.-
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988753
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.53 E-value=0.076 Score=55.79 Aligned_cols=90 Identities=2% Similarity=-0.127 Sum_probs=64.1
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC-C-CCCCC-HHHHHHHH
Q 003946 643 KRLMQDAEKALKRMRSL---GHLPN----AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS-T-SMNFD-EELLDSVL 712 (784)
Q Consensus 643 ~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~-~-~~~p~-~~~~~~li 712 (784)
.|++++|+.++++.++. -+-|+ ..+++.|..+|...| ++++|..++++..+...+ . .-.|+ ..+|+.|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46778888887776652 12232 457788888888888 888888888877653221 1 12233 34689999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 003946 713 YTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 713 ~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.39 E-value=0.98 Score=37.52 Aligned_cols=66 Identities=20% Similarity=0.127 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR 520 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 520 (784)
......++.+...|.-++..+++..+.... +|++...-.+-.||.+.|+..+|.+++.+..+.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~---~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNN---EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccC---CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 445566777778888888777777754433 677777777778888888888888888888887764
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.27 E-value=0.93 Score=52.26 Aligned_cols=49 Identities=6% Similarity=0.046 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003946 595 QEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKAL 653 (784)
Q Consensus 595 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 653 (784)
..|..+...|.+.++++.|++.|..+.. |..+...|...|+.+...++-
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHH
Confidence 3444455555555555555444444432 344444444455554444333
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.63 E-value=0.21 Score=57.81 Aligned_cols=154 Identities=12% Similarity=0.149 Sum_probs=94.9
Q ss_pred HHHHcCChHHHHH-HHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 460 AFLEAGKTKELTH-FLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR 538 (784)
Q Consensus 460 ~~~~~g~~~~a~~-~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 538 (784)
.....+++++|.+ ++.. .++......++..+.+.|.++.|.++.+.-. .-.......|+
T Consensus 608 ~~~~~~~~~~a~~~~l~~--------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~ 667 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN--------VEGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQ 667 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG--------CCCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHhc--------CCchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCC
Confidence 3456788888866 4421 2212223677788888888888887663211 11334567899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 618 (784)
+++|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...++.+...++-+
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHH
Confidence 99998876543 4678899999999999999999999987642 3344444555665555544444
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRM 656 (784)
Q Consensus 619 ~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 656 (784)
.....+. ++.-..+|.+.|++++|++++.++
T Consensus 732 ~a~~~~~-------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 732 DAETTGK-------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCc-------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4443321 344444455556666555555433
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.54 E-value=2.1 Score=37.87 Aligned_cols=23 Identities=0% Similarity=0.042 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKR 655 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~ 655 (784)
+|.-...+...|+++++.+++.+
T Consensus 92 ~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 92 FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555556666666666543
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.51 E-value=0.25 Score=39.05 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=25.2
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDAS-CYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
.+.+.|++++|...|++..+.. ..+.. .|..+-.+|...|++++|+..|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444455555555555544432 11233 4444444444455555555555544443
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.29 E-value=2.7 Score=37.24 Aligned_cols=128 Identities=15% Similarity=0.112 Sum_probs=89.4
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
..+.|+++.|.++.+++ ++...|..|.......|+++-|++.|..... |..+.-.|.-.|+.+
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 34568888888887765 3366888888888888888888888888774 678888888899988
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003946 648 DAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEV 727 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 727 (784)
+-.++-+.....| + ++.-...+.-.| +++++.+++.+..+ -| --.-.....|-.+.|.++
T Consensus 78 ~L~kla~iA~~~g---~---~n~af~~~l~lG-dv~~~i~lL~~~~r-------~~------eA~~~A~t~g~~~~a~~~ 137 (177)
T 3mkq_B 78 KLSKMQNIAQTRE---D---FGSMLLNTFYNN-STKERSSIFAEGGS-------LP------LAYAVAKANGDEAAASAF 137 (177)
T ss_dssp HHHHHHHHHHHTT---C---HHHHHHHHHHHT-CHHHHHHHHHHTTC-------HH------HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCc---c---HHHHHHHHHHcC-CHHHHHHHHHHCCC-------hH------HHHHHHHHcCcHHHHHHH
Confidence 8777766555543 1 344555566678 99999999866544 11 111122235667788888
Q ss_pred HHHHH
Q 003946 728 VAMME 732 (784)
Q Consensus 728 ~~~m~ 732 (784)
.+++.
T Consensus 138 ~~~~~ 142 (177)
T 3mkq_B 138 LEQAE 142 (177)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 77663
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.21 E-value=0.36 Score=38.05 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=29.5
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDA-ALGHVITLCISLGWLDQAHDLLDEMHLA 517 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 517 (784)
.+.+.|++++|...|++..+.. +.+.. .+..+..++...|++++|...|+...+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE---PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC---SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4445555555555555555543 33344 4555555555555555555555555544
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.07 E-value=0.87 Score=35.69 Aligned_cols=46 Identities=2% Similarity=-0.049 Sum_probs=18.5
Q ss_pred hHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 575 PGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 575 ~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
++|..++++..+.. |.+......+...+.+.|++++|...|+.+.+
T Consensus 26 ~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444332 33333333333444444444444444444333
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.42 E-value=0.59 Score=40.34 Aligned_cols=81 Identities=9% Similarity=-0.018 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHH
Q 003946 468 KELTHFLIKAEKENLQVSHDDAALGHVITLCISLG---WLDQAHDLLDEMHLAGVRA--SSSVYASLLKAYIEANRPREV 542 (784)
Q Consensus 468 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A 542 (784)
..+.+.|.+....+ .++..+...+-.++++++ +++++..++++..+.+ .| +...+-.|.-+|.+.|++++|
T Consensus 15 ~~~~~~y~~e~~~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHTT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34445555555555 456666666666677666 4557777777777654 12 233334455566777777777
Q ss_pred HHHHHHHHHc
Q 003946 543 TALLRDARSA 552 (784)
Q Consensus 543 ~~~~~~m~~~ 552 (784)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777664
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.48 E-value=0.77 Score=36.85 Aligned_cols=77 Identities=12% Similarity=0.019 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003946 664 NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASST--SMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKY 741 (784)
Q Consensus 664 ~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 741 (784)
+..-+..+...+...+ +++.|...+++..+..... .-.+...++..|..+|.+.|++++|...+++..+ +.|+..
T Consensus 4 sa~dc~~lG~~~~~~~-~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CHHHHHHHHHHHHHcc-chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 4455567777888888 9999999888876643222 1234567888999999999999999999998887 466654
Q ss_pred HH
Q 003946 742 KY 743 (784)
Q Consensus 742 ~~ 743 (784)
..
T Consensus 81 ~~ 82 (104)
T 2v5f_A 81 RA 82 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.31 E-value=0.93 Score=39.09 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH
Q 003946 505 DQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN---RPREVTALLRDARS 551 (784)
Q Consensus 505 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 551 (784)
..+++.|.+..+.|. ++..+.-.+..++++++ +++++..++++..+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~ 63 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP 63 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 334444444433332 34444444444444444 33344444444443
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.08 E-value=2.9 Score=32.64 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 522 SSSVYASLLKAYIEANR---PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 522 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
|...+..+..++...++ .++|..++++..+.. +-+......+-..+.+.|++++|+..|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44444444444433332 455555555554442 1233444444445555555555555555555443
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.56 E-value=10 Score=36.58 Aligned_cols=83 Identities=11% Similarity=0.040 Sum_probs=45.1
Q ss_pred hHHHHHHHHhHhcCCCCC--cHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhc-C
Q 003946 575 PGALHLFKEMKESKIPRS--GHQEFEMLVKGCAQN-----HEAGLMAKLLQEVKEGQRIDC--GVHDWNNVIHFFCKK-R 644 (784)
Q Consensus 575 ~~A~~~~~~m~~~~~~~~--~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p--~~~~y~~li~~~~~~-g 644 (784)
..|...+++..+.. |. +...|..+...|.+. |+.+.|.+.|++..+.+ | +..++......+++. |
T Consensus 180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln---P~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC---SAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC---CTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhcC
Confidence 44555555555543 33 334566666666653 56666666666665533 3 244455555555553 6
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 003946 645 LMQDAEKALKRMRSLGHL 662 (784)
Q Consensus 645 ~~~~A~~~~~~m~~~g~~ 662 (784)
+.+++.+.+++.+.....
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 666666666666655433
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.29 E-value=2.9 Score=33.29 Aligned_cols=61 Identities=8% Similarity=-0.107 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAG------VRASSSVYASLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
+..+...+.+.|+++.|...|+...+.- -.+...++..|..+|.+.|+++.|...+++..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455555555555555555444320 012334444444444555555555555444443
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=89.63 E-value=1.8 Score=41.72 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhcccCCCCCC--CHHHHHHHHHHH
Q 003946 646 MQDAEKALKRMRSLGHLPN---AQTFHSMVTGYAAI-----GGKYTEVTELWGEMKSFASSTSMNF--DEELLDSVLYTF 715 (784)
Q Consensus 646 ~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~-----g~~~~~a~~~~~~m~~~~~~~~~~p--~~~~~~~li~~~ 715 (784)
..+|..++++..+ +.|+ ...|..+...|... | +.++|.+.|++..+ +.| +..++..+.+.|
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gG-d~ekA~~~ferAL~------LnP~~~id~~v~YA~~l 249 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGG-GMEKAHTAFEHLTR------YCSAHDPDHHITYADAL 249 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTC-CHHHHHHHHHHHHH------HCCTTCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCC-CHHHHHHHHHHHHH------hCCCCCchHHHHHHHHH
Confidence 3455555666655 3454 44566666666663 4 77777777777666 333 255566666666
Q ss_pred Hhc-CChHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 003946 716 VRG-GFFARANEVVAMMEEGKMF--IDKYKYRTL 746 (784)
Q Consensus 716 ~~~-g~~~~A~~l~~~m~~~g~~--pd~~~~~~l 746 (784)
++. |+.+++.+.+++..+.... |+....+.+
T Consensus 250 ~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 250 CIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 663 6777777777777766555 554444443
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.29 E-value=2.8 Score=34.72 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=6.8
Q ss_pred HHhcCcHHHHHHHHHHHH
Q 003946 604 CAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~ 621 (784)
+.+.|+++.|.+.++.+.
T Consensus 84 ~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 333333333333333333
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.27 E-value=13 Score=31.71 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003946 449 PTEKIYIKLVKAFLEAGKT------KELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS 522 (784)
Q Consensus 449 p~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 522 (784)
-|..+|-..+....+.|+. ++..++|++.... ++|+.. +.++.=.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~---~Pp~k~------------~~wrrYI-------------- 61 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA---LPPDKY------------GQNESFA-------------- 61 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH---SCGGGG------------TTCHHHH--------------
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc---CCcccc------------ccHHHHH--------------
Confidence 3677777777777777777 6666777766654 355421 0110000
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
..|--.. .+...+++++|.++|+.+++..-.. ...|......-.+.|++.+|.+++......+
T Consensus 62 -~LWIrYA-~~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 62 -RIQVRFA-ELKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp -HHHHHHH-HHHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -HHHHHHH-HHHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 0000000 0112256666666666665432222 4455555555556667777777776666655
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.01 E-value=2.9 Score=34.57 Aligned_cols=82 Identities=10% Similarity=0.028 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHH
Q 003946 468 KELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQ---AHDLLDEMHLAGVR-ASSSVYASLLKAYIEANRPREVT 543 (784)
Q Consensus 468 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~ 543 (784)
..+.+-|.+....| .|+..+-..+-.++.++.+... +..+++++.+.+-+ -.....-.|.-++.+.|++++|.
T Consensus 18 ~~~~~~y~~e~~~~---~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444444444 3444444445555555554443 66666665554311 01222223445556666666666
Q ss_pred HHHHHHHHc
Q 003946 544 ALLRDARSA 552 (784)
Q Consensus 544 ~~~~~m~~~ 552 (784)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 234
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.62 E-value=6.9 Score=30.61 Aligned_cols=63 Identities=3% Similarity=0.083 Sum_probs=51.4
Q ss_pred ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 268 TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 268 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
|.-+..+-++.+....+.|++.+..+.+.+|-|.+++..|.++|+.++.+...... +|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~----iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKE----IYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTT----HHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchh----hHHHHHH
Confidence 45567777888888889999999999999999999999999999999887544432 4666654
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.48 E-value=22 Score=37.08 Aligned_cols=194 Identities=7% Similarity=0.037 Sum_probs=125.4
Q ss_pred CChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH----hc
Q 003946 537 NRPREVTALLRDARSA-----GIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA----QN 607 (784)
Q Consensus 537 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~----~~ 607 (784)
|+++.|.+.+-.+.+. ...........++..|...++++...+.+.-+.+..... ......++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 6788888887766542 234456778889999999999999988887766543222 233444444332 22
Q ss_pred CcHHH--HHHHHHHHHh--cCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHH
Q 003946 608 HEAGL--MAKLLQEVKE--GQRIDC---GVHDWNNVIHFFCKKRLMQDAEKALKRMRSL--GHLPN---AQTFHSMVTGY 675 (784)
Q Consensus 608 ~~~~~--a~~~~~~~~~--~~~~~p---~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~a~ 675 (784)
...+. -..+.+.+.. .+.+-- .......|...|-..|++.+|.+++.++... |..+. ...|..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32221 1122221111 111111 1233467889999999999999999998643 22222 34667778889
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFD--EELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
...+ ++..|..+..++..........|+ ...|..++..+...+++.+|.+.|.+.-+
T Consensus 188 l~~~-d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKG-DYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCC-CHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999 999999999987542222222232 34578889999999999999998888764
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.18 E-value=19 Score=40.19 Aligned_cols=57 Identities=9% Similarity=-0.059 Sum_probs=47.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003946 456 KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMH 515 (784)
Q Consensus 456 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 515 (784)
.-..-|...|+++.|+++-++....- +.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34455667899999999999988775 6678899999999999999999999888774
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.51 E-value=4.5 Score=41.57 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL-----AGVRASSSVY 526 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~ 526 (784)
....++.++...|++++|...+..+.... +.+...|..+|.++.+.|+..+|.+.|+...+ .|+.|+..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34556777888889998888888888776 67888888899999999999998888887653 4788876553
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.50 E-value=0.0013 Score=67.55 Aligned_cols=121 Identities=14% Similarity=0.168 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
++.||--+-.+|...+.+..|.-.--.+. +.||. ...++.-|-..|.+++-+.+++.-... -......|+-|
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 55678888888888888877665555544 22332 334677777888888877777765522 13467778888
Q ss_pred HHHHHHcCChHHHHHHHHHHH-HcCCCC------CHHHHHHHHHHHHHcCChhHHHH
Q 003946 530 LKAYIEANRPREVTALLRDAR-SAGIQL------DASCYEALLQSKIVQKDTPGALH 579 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~-~~g~~p------~~~t~~~li~~~~~~g~~~~A~~ 579 (784)
.-.|+|-. .++..+-++.-. +-++.. ....|.-++-.|.+..+++.|..
T Consensus 270 aILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 270 AILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 88887753 333222222111 111111 22447777777777777776643
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.91 E-value=48 Score=34.51 Aligned_cols=100 Identities=13% Similarity=0.052 Sum_probs=71.0
Q ss_pred HHHHHHHhhhcCChhHHHHHHHhhhhC--CCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCCChhhHHH
Q 003946 256 FNIALAGCLLFETTRKAEQLLDIMPRI--GVKAD---SNLLIIMAHIYERNGRREELRKLQRHIDEA---VNLSDIQFRQ 327 (784)
Q Consensus 256 ~~~ll~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~~~~~~~ 327 (784)
...+...+...|++.+|..++..+... |.... ...+...+..|...+++..|..++..+... ..+....-..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345667788899999999999988632 32222 146677788899999999999998887542 2222222223
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003946 328 FYNCLLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
.+..++..+...+++.+|...|.+..+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4777888888889999998888877663
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=81.73 E-value=0.064 Score=55.28 Aligned_cols=81 Identities=20% Similarity=0.076 Sum_probs=52.6
Q ss_pred CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHH
Q 003946 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFY 329 (784)
Q Consensus 250 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~ 329 (784)
..++.||-.+-.+|...+.+..|...--.++-+ ||. ...++.-|-+.|.+++...+++.-......... ++
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmG----mF 266 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---ADE--LEELINYYQDRGYFEELITMLEAALGLERAHMG----MF 266 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH----HH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH----HH
Confidence 456678999999999999888876554444422 221 113455677888888888877776543333333 57
Q ss_pred HHHHHHHHhc
Q 003946 330 NCLLSCHLKF 339 (784)
Q Consensus 330 ~~li~~~~~~ 339 (784)
+-|.-.|+|-
T Consensus 267 TELaILYsKY 276 (624)
T 3lvg_A 267 TELAILYSKF 276 (624)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhc
Confidence 7777777765
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=81.27 E-value=9.2 Score=32.61 Aligned_cols=112 Identities=16% Similarity=0.085 Sum_probs=72.3
Q ss_pred cccCCChHHHHHHHHHHHhccch------hhHHHHHHHhcccCCCCCc----hhHHHHHHHHHhccChhhHHHHHHHHHH
Q 003946 84 LVQARDPAKLSAEIENAINEHRY------GDAWKLYEQHMQMDGFPRK----TLVNKILTSFVESLDSKWLEKAYGLVEQ 153 (784)
Q Consensus 84 ~~~~~~~~~~~~li~~~~~~~~~------~~A~~l~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 153 (784)
...+.|+.+|-..+...-+.|++ +..+++|++... ..+|+. ..|-.+.--|+......+.++|.+++..
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45678999999999888888999 888899998776 334433 2233333333332222344445556666
Q ss_pred HHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCC
Q 003946 154 AFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPP 199 (784)
Q Consensus 154 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 199 (784)
+....+. . ..++..-...-.+.|+++.|++++......+.+|.
T Consensus 86 a~~~hKk--F-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 86 ARANCKK--F-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHCTT--B-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHhHH--H-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 5544122 2 55555566667789999999999999998877654
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.23 E-value=6.2 Score=40.57 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-ccCCCCCCCHHHH
Q 003946 635 NVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSF-ASSTSMNFDEELL 708 (784)
Q Consensus 635 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~-~~~~~~~p~~~~~ 708 (784)
.++..+...|++++|...+...... ..-+...|..+|.++...| +..+|.+.|+...+. ..+.|+.|++.+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~G-r~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSD-RQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444444455555555444444432 1124444555555555555 555555555444331 1123455554443
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.23 E-value=15 Score=30.52 Aligned_cols=63 Identities=3% Similarity=0.083 Sum_probs=50.7
Q ss_pred ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 268 TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 268 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
|.-+..+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+-++.+...... +|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~----iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKE----IYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTT----HHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchh----hHHHHHH
Confidence 44466677778888889999999999999999999999999999999987544433 4666554
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=79.88 E-value=91 Score=35.71 Aligned_cols=275 Identities=12% Similarity=0.042 Sum_probs=149.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHH
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVI--TLCISLGWLDQAHDLLDEMHLAGV-------RASSSVYASLL 530 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~g~-------~~~~~~~~~li 530 (784)
+....|+.++++.++..-...+ ...+..+-..-+ -+....|..+++..++.......- .+.+..-.++-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~--~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGS--RASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTS--CCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhcccc--CCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 4567788888877776644321 022333333333 334455665677777776654321 11233334444
Q ss_pred HHHHHcCC-hHHHHHHHHHHHHcCCCCCHHH--HHHHHHH--HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 531 KAYIEANR-PREVTALLRDARSAGIQLDASC--YEALLQS--KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 531 ~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t--~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
-+++-.|. -+++.+.+..+... .+... ..++.-+ +.-.|+.+....++..+.+.. .++..-+..+.-++.
T Consensus 461 LGla~~GS~~eev~e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll 535 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhh
Confidence 44443443 24566666666542 23222 2222223 335567777777777766532 222222333333444
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCH
Q 003946 606 QNHEAGLMAKLLQEVKEGQRIDCGVHDWN---NVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKY 682 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~p~~~~y~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~ 682 (784)
..|+.+.+..+++.+..... | ..-|. ++.-+|+..|+.....+++..+.+. ...+......+--++...| +.
T Consensus 536 ~~g~~e~~~~li~~L~~~~d--p-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g-~~ 610 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDE--S-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLR-DY 610 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSC--H-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSS-SC
T ss_pred hCCChHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccC-CH
Confidence 67888889999888887432 2 33344 3345677888987777799988864 1222332223333444467 66
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHH-HHHH-HHHhccc
Q 003946 683 TEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFF-ARANEVVAMMEEGKMFIDKYKY-RTLF-LKYHKTL 754 (784)
Q Consensus 683 ~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~~~-~~li-~~~~~~~ 754 (784)
+.+.++++.+.+ ...|....-..+.-+....|.. .+|..++..+.. .+|..+- ++++ .+..+.+
T Consensus 611 e~v~rlv~~L~~-----~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 611 TTVPRIVQLLSK-----SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp SSHHHHTTTGGG-----CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcC
Confidence 667777766654 2345555555555556656654 688889999985 3455444 3443 3444433
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.73 E-value=48 Score=32.42 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCCHHHHH
Q 003946 594 HQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEK----ALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 594 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~~~~ 669 (784)
+..|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-+ +++-..+.+++++.....
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~ 96 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVA 96 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 44555666666666666666665433221 1233344333333 344444455666655555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcccCCC--CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003946 670 SMVTGYAAIGGKYTEVTELWGEMKSFASSTS--MNFDEELLDSVLYTFVRGGFFARANEVV 728 (784)
Q Consensus 670 ~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~ 728 (784)
-++..+..-...-..=.++.+++.+--.+.+ ..-++.....+...|.+.|++.+|..-|
T Consensus 97 rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 97 RLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5554443322000011222222222111111 1235666666677777777766666544
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.63 E-value=58 Score=32.15 Aligned_cols=158 Identities=11% Similarity=0.056 Sum_probs=87.1
Q ss_pred hhHHHHHHHHhHhcCCC---CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003946 574 TPGALHLFKEMKESKIP---RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAE 650 (784)
Q Consensus 574 ~~~A~~~~~~m~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 650 (784)
+++.+.=+++-++.|-. =..+.+|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~----------------~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQ----------------TLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH----------------HHHHCCCcchHH
Confidence 33444444444444422 12345677777778888888888877543321 133445544433
Q ss_pred H----HHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHhcccCC--CCCCCHHHHHHHHHHHHhcCChHH
Q 003946 651 K----ALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYT-EVTELWGEMKSFASST--SMNFDEELLDSVLYTFVRGGFFAR 723 (784)
Q Consensus 651 ~----~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~-~a~~~~~~m~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~ 723 (784)
+ +++-+.+.++++|.....-|+..+..-. .-+ .=..+.+++.+--.+. ...-|+.....+...|.+.|++.+
T Consensus 76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~-~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~ 154 (336)
T 3lpz_A 76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ-PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEA 154 (336)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 3 3355555667777776666666655444 211 1122333332221111 233467777888899999999988
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 003946 724 ANEVVAMMEEGKMFIDKYKYRTLFLKYHK 752 (784)
Q Consensus 724 A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 752 (784)
|..-|- .|-.+...++..++..+..
T Consensus 155 Ae~H~i----lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 155 AEKHLV----LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HHHHHT----TSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHH----hcCCchHHHHHHHHHHHHH
Confidence 887762 2444444677666654444
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.30 E-value=9.9 Score=29.74 Aligned_cols=49 Identities=6% Similarity=0.203 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 645 LMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 645 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+.-+..+-++.+....+.|++....+.+.||.+.+ ++-.|.++++-++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvN-D~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLN-DFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Confidence 34455555555666666777777777777777777 77777777776665
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.64 E-value=44 Score=39.89 Aligned_cols=53 Identities=13% Similarity=-0.011 Sum_probs=30.4
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhc
Q 003946 167 PLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQ 232 (784)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~ 232 (784)
....++..+.+.|..+-|.++..-..+ +..+ ..+.|.+- ...|++++|.+.|.
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~--~yl~g~~~------L~~ge~~~A~~~F~ 866 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-----DPIA--VYLKALIY------LKSKEAVKAVRCFK 866 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-----CHHH--HHHHHHHH------HHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-----CcHH--HHHHHHHH------HhcCCHHHHHHHHH
Confidence 344466666667777776665544332 3333 34433322 22388999999998
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.12 E-value=12 Score=31.15 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=58.8
Q ss_pred CCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCC
Q 003946 120 DGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPP 199 (784)
Q Consensus 120 ~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 199 (784)
+..|+..+--..--++.++.+.....+++.+++.+... .+. ...+..-+|..++.|.|+++.|++..+.+.+. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~-~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-Ccc-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 44566666555666778888888999999999999876 111 13344555888999999999999999999974 566
Q ss_pred hHH
Q 003946 200 VTA 202 (784)
Q Consensus 200 ~~~ 202 (784)
-.-
T Consensus 111 N~Q 113 (134)
T 3o48_A 111 NKQ 113 (134)
T ss_dssp CHH
T ss_pred CHH
Confidence 443
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=75.64 E-value=38 Score=37.79 Aligned_cols=52 Identities=10% Similarity=0.002 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccc
Q 003946 701 MNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTL 754 (784)
Q Consensus 701 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~~ 754 (784)
.+-+..-|..|.....|.+.++||.+.|...... +-+...+..|+..|....
T Consensus 609 ~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 609 EKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 3345667899999999999999999999999975 579999999998887654
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=74.31 E-value=1.3e+02 Score=34.53 Aligned_cols=237 Identities=10% Similarity=0.039 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCChHHHH
Q 003946 468 KELTHFLIKAEKENLQVSHDDAALGH--VITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI--EANRPREVT 543 (784)
Q Consensus 468 ~~a~~~~~~m~~~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A~ 543 (784)
+++.+.+..+.... .+......+ +...+...|+-+....++..+.+.. +..+...+.-+++ -.|+.+.+.
T Consensus 471 eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~ 544 (963)
T 4ady_A 471 IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELAD 544 (963)
T ss_dssp HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHH
Confidence 45666676666543 111111222 2233445678888888888777642 4444444555544 678889999
Q ss_pred HHHHHHHHcCCCCCHH-HHHH---HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003946 544 ALLRDARSAGIQLDAS-CYEA---LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE 619 (784)
Q Consensus 544 ~~~~~m~~~g~~p~~~-t~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 619 (784)
.+.+.+... .|.. -|.. +.-+|+..|+.....++++.+.... .++......+.-+....|+.+.+.++++.
T Consensus 545 ~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 545 DLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp HHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 898888763 3333 2332 2335667788877777888887643 22222222333344446666667777766
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-CHH----HHHHHHHHHH
Q 003946 620 VKEGQRIDCGVHDWNNVIHFFCKKRLM-QDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGG-KYT----EVTELWGEMK 693 (784)
Q Consensus 620 ~~~~~~~~p~~~~y~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~-~~~----~a~~~~~~m~ 693 (784)
+.+.. .|.+..-.++.-+....|.. .+|.+++..+.. .+|..+-..-+.++...|. ..+ ....+.+.+.
T Consensus 620 L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 620 LSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694 (963)
T ss_dssp GGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred HHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 66543 24454444444555555543 678888888875 3555544444444444331 212 2333333333
Q ss_pred hcccCCCCCCCHHHHHHHHHHHHhcCC
Q 003946 694 SFASSTSMNFDEELLDSVLYTFVRGGF 720 (784)
Q Consensus 694 ~~~~~~~~~p~~~~~~~li~~~~~~g~ 720 (784)
+...+..-.++...-..+..+...+|.
T Consensus 695 ~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 695 SVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 221112223344445555555555553
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.25 E-value=79 Score=37.67 Aligned_cols=84 Identities=11% Similarity=0.071 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHH
Q 003946 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA----QTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEE 706 (784)
Q Consensus 631 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~ 706 (784)
.-|..++..+-+.|.++.+.++-...++..-.-+. ..|..++.++...| ++++|...+-.+.. .. --..
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~-~ye~Ay~aL~~~pd----~~--~r~~ 972 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG-KFDAAHVALMVLST----TP--LKKS 972 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC-CSGGGGHHHHHHHH----SS--SCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC-CHHHHHHHHHhCCC----HH--HHHH
Confidence 45788889999999999998888776654211121 25788899999999 99999988877765 22 2356
Q ss_pred HHHHHHHHHHhcCCh
Q 003946 707 LLDSVLYTFVRGGFF 721 (784)
Q Consensus 707 ~~~~li~~~~~~g~~ 721 (784)
....|+..++..|..
T Consensus 973 cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhCCCh
Confidence 677777777766553
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.45 E-value=27 Score=29.41 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=57.3
Q ss_pred CCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChH
Q 003946 122 FPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVT 201 (784)
Q Consensus 122 ~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 201 (784)
.|+..+--..--++.++.+.....+.+.+++.+... .+. ...+..-+|..+|.|.|+++.|++..+.+++. .|+-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-Ccc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcH
Confidence 356655555666778888899999999999999886 211 12333444788999999999999999999985 56544
Q ss_pred H
Q 003946 202 A 202 (784)
Q Consensus 202 ~ 202 (784)
-
T Consensus 112 Q 112 (144)
T 1y8m_A 112 Q 112 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=68.29 E-value=35 Score=28.35 Aligned_cols=48 Identities=6% Similarity=0.234 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 646 MQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 646 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
.-+..+-++.+....+.|++....+.+.+|.+.+ ++-.|.++++-++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvN-DfalAVR~lE~vK~ 116 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLN-DFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Confidence 3445555555555667777777777777777777 77777777777765
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=67.61 E-value=55 Score=27.56 Aligned_cols=90 Identities=14% Similarity=0.036 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003946 662 LPNAQTFHSMVTGYAAIGGKY---TEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFI 738 (784)
Q Consensus 662 ~p~~~~~~~ll~a~~~~g~~~---~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 738 (784)
.|+..+--.+.+++.++. +. .+++.+++.+.+. +..-.....--|.-++.+.|++++|.+..+.+.+ +.|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~-~~~di~~GI~LLe~l~~~----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHH----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCC
T ss_pred CCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhc----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCC
Confidence 566666666777787776 54 4567777777651 1112345555677888899999999999999988 478
Q ss_pred CHHHHHHH---H-HHHhcccccCC
Q 003946 739 DKYKYRTL---F-LKYHKTLYKGK 758 (784)
Q Consensus 739 d~~~~~~l---i-~~~~~~~~~~~ 758 (784)
+..--..| | ..+.+++-.|.
T Consensus 109 ~n~QA~~Lk~~Ie~~i~kdGliG~ 132 (144)
T 1y8m_A 109 NNKQVGALKSMVEDKIQKETLKGV 132 (144)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTTC
T ss_pred CcHHHHHHHHHHHHHHHHhchhhh
Confidence 76444444 4 56666666663
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.02 E-value=92 Score=29.53 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=59.2
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQR-IDCGVHDWNNVIHFFCKKRLM 646 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~y~~li~~~~~~g~~ 646 (784)
..+.|++++|++....-++.. |.+...-..++..+|-.|+++.|.+-++...+.++ ..|....|..+|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~-------- 76 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK-------- 76 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH--------
T ss_pred HHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH--------
Confidence 345566666666666655554 56666666666666666666666666665555331 1112233444443
Q ss_pred HHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHh
Q 003946 647 QDAEKALKRMRSLGHLP-----NAQTFHSMVTGYAA--IGGKYTEVTELWGEMKS 694 (784)
Q Consensus 647 ~~A~~~~~~m~~~g~~p-----~~~~~~~ll~a~~~--~g~~~~~a~~~~~~m~~ 694 (784)
|+..-.+...-+-.| ...-...++.+... .| +.++|..+-.++.+
T Consensus 77 --aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G-~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 77 --AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ-DYEQVSELALQIEE 128 (273)
T ss_dssp --HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHh
Confidence 233333333333222 12223344544433 46 77777777777755
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=64.14 E-value=60 Score=26.95 Aligned_cols=81 Identities=12% Similarity=0.025 Sum_probs=51.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003946 660 GHLPNAQTFHSMVTGYAAIGGKY---TEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKM 736 (784)
Q Consensus 660 g~~p~~~~~~~ll~a~~~~g~~~---~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 736 (784)
+-.|+..|--.+.+++.+.. +. .+++.+++++.+ .+..-.....--|.-++.+.|++++|.+..+.+.+ +
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~----~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYK----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--H 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--T
T ss_pred CCCCChhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHh----cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--h
Confidence 34566666555666777766 44 356667776665 12111355566677788888888888888888876 4
Q ss_pred CCCHHHHHHHH
Q 003946 737 FIDKYKYRTLF 747 (784)
Q Consensus 737 ~pd~~~~~~li 747 (784)
.|+..--..|-
T Consensus 108 eP~N~QA~~Lk 118 (134)
T 3o48_A 108 ERNNKQVGALK 118 (134)
T ss_dssp CTTCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 67765555443
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=63.55 E-value=51 Score=31.24 Aligned_cols=116 Identities=20% Similarity=0.180 Sum_probs=77.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHc
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV--RASSSVYASLLKAYIEA 536 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~ 536 (784)
....+.|.+++|++....-.+.. +-|...-..++.-+|-.|++++|.+-++...+..- .|....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH----
Confidence 34568899999999999988887 78888899999999999999999999998887641 1223344444433
Q ss_pred CChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHH--HcCChhHHHHHHHHhHhc
Q 003946 537 NRPREVTALLRDARSAGIQL-----DASCYEALLQSKI--VQKDTPGALHLFKEMKES 587 (784)
Q Consensus 537 g~~~~A~~~~~~m~~~g~~p-----~~~t~~~li~~~~--~~g~~~~A~~~~~~m~~~ 587 (784)
+..=.+....+-.| ...-...++.+.. ..|+.++|..+-.+..+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11112222222122 2223445555554 458999999988887654
No 259
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.78 E-value=1.4e+02 Score=29.81 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW--LDQAHDLLDEMHLAGVRAS 522 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~ 522 (784)
...+.++.-|...|+.++|.+.++++.... .. ...+...+..+.-+.++ .+...+++..+.+.|+-+.
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~--fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPH--FH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTT--CH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCc--ch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 456788889999999999999999885322 12 23345555555554433 4567777888877765433
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.74 E-value=64 Score=33.35 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHH--H
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP--NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEE--L 707 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~--~ 707 (784)
++..+...|.+.|++++|.+.+.++...-..+ -...+-.++..+...+ ++..+.....++...... +-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~-d~~~~~~~~~ka~~~~~~-~~d~~~~~~l 210 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN-DQLYVKEKLEAVNSMIEK-GGDWERRNRY 210 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTT-CCCTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhc-CCCHHHHHHH
Confidence 56778888899999999999999888652222 2556777888888888 999999988888764332 2223222 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 708 LDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 708 ~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
...-...+...+++.+|.+.|-+...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 11222334456889998888877654
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=54.94 E-value=51 Score=25.69 Aligned_cols=78 Identities=8% Similarity=-0.018 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 466 KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTAL 545 (784)
Q Consensus 466 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 545 (784)
..++|..+-+.+...+ . ...+--+-+..+...|++++|..+.+.+. .||...|-+|.. .+.|..+++..-
T Consensus 22 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 4456666666665554 2 22222222344556777777776665443 567777766543 366666666666
Q ss_pred HHHHHHcC
Q 003946 546 LRDARSAG 553 (784)
Q Consensus 546 ~~~m~~~g 553 (784)
+.++..+|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 66665544
No 262
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.75 E-value=27 Score=29.05 Aligned_cols=73 Identities=7% Similarity=0.110 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHHHHHHHHHhch
Q 003946 292 IIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGD--LNSASKMVLEMLQRAKEARNSLAAAML 368 (784)
Q Consensus 292 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~~~ 368 (784)
..++.-|...|+.++|.+.++++... ... ..++...+..++-+.++ .+....++..+...++++.+++..|+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p---~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~ 85 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVP---HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 85 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG---GGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC---ccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 34555555556666665555555321 110 01134444444444321 344555555555555555555555543
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.36 E-value=1e+02 Score=31.76 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHH----H
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA---GVRASSS----V 525 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~----~ 525 (784)
++..+..-|.+.|++++|.+.|.++........--...+..+|..+...+++..+...++..... +-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45678888999999999999999998653212333456778889999999999999998887642 2222221 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
|..+ .+...+++..|...|-+....
T Consensus 213 ~~gl--~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGI--HCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHH--GGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHhChHHHHHHHHHHHhcc
Confidence 2222 233467888888888776543
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=49.86 E-value=81 Score=27.36 Aligned_cols=29 Identities=7% Similarity=-0.115 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 706 ELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 706 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
+.---+...|.+.|++++|..+++..+.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 44334778888999999999999887543
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=49.78 E-value=50 Score=25.72 Aligned_cols=78 Identities=13% Similarity=0.000 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 466 KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTAL 545 (784)
Q Consensus 466 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 545 (784)
..++|..+-+.+...+ . ...+--+-+..+...|++++|..+.+.+. .||...|-+|.. .+.|..+++..-
T Consensus 21 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 4456666666665554 2 22222222344556777777766655443 467777666543 366666666666
Q ss_pred HHHHHHcC
Q 003946 546 LRDARSAG 553 (784)
Q Consensus 546 ~~~m~~~g 553 (784)
+.++..+|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 66666554
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.05 E-value=1.4e+02 Score=26.89 Aligned_cols=71 Identities=8% Similarity=-0.020 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 003946 301 NGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAV 373 (784)
Q Consensus 301 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 373 (784)
++...++..+|..|...+....... .|......+...|++.+|.++|+.=.+++..|...+...+..|...
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~Al--fYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSL--FYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 3446677788888777633322221 5777777777888888888888777777666777777777666554
No 267
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.86 E-value=2.1e+02 Score=27.77 Aligned_cols=67 Identities=22% Similarity=0.246 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW--LDQAHDLLDEMHLAGVRA 521 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~ 521 (784)
...+.++.-|...|+.++|.+.++++.... .. ...++..+..+.-+.++ .+....++..+.+.|+-+
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~p~--f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEVPH--FH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCGG--GH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCc--ch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 356678888999999999999999985322 12 23345555555555433 456778888888776543
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=44.85 E-value=89 Score=27.12 Aligned_cols=56 Identities=7% Similarity=-0.034 Sum_probs=28.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003946 494 VITLCISLGWLDQAHDLLDEMHLAG-VRAS-------SSVYASLLKAYIEANRPREVTALLRDA 549 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~~g-~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m 549 (784)
-+..+...|.++.|+-+.+.+.... ..|+ ..+...+.+++...|++..|...|++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3445555566666665555544221 1222 123444555566666666666666654
No 269
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.74 E-value=26 Score=30.12 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=12.0
Q ss_pred HHHHHHHhhhcCChhHHHHHHHhh
Q 003946 256 FNIALAGCLLFETTRKAEQLLDIM 279 (784)
Q Consensus 256 ~~~ll~~~~~~g~~~~A~~l~~~m 279 (784)
.+.+|.-|...|+.++|.+.++++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 344455555555555555555544
No 270
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=38.78 E-value=4.2e+02 Score=28.94 Aligned_cols=347 Identities=13% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHH-------hcCCHHHHHHHHHHHHhhcCCChhhHHHHHH
Q 003946 258 IALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYE-------RNGRREELRKLQRHIDEAVNLSDIQFRQFYN 330 (784)
Q Consensus 258 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~-------~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~ 330 (784)
.+|-.|.|+|++++|.++.++.... +.--...+...+..|+ ....-+....-|++..+.....++--..+|.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 235 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYK 235 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC------------------------------CHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccc----ccccch
Q 003946 331 CLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIE----NHILSY 406 (784)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 406 (784)
.+..+=....+..+...-.+....-.. ..+..............+. ..+..|
T Consensus 236 Iig~cD~~~~~~~~v~~siED~LWl~L------------------------~lvre~~~~~~~~~e~ytL~~LQ~~I~~y 291 (661)
T 2qx5_A 236 LIGRCDLSRKNIPAVTLSIEDWLWMHL------------------------MLIKEKDAENDPVYERYSLEDFQNIIISY 291 (661)
T ss_dssp HHHTCCGGGCCCGGGCCSHHHHHHHHH------------------------HTCCC----------CCCHHHHHHHHHHH
T ss_pred HHhcccccccchHHHhccHHHHHHHHH------------------------HhccCCCcccccccccccHHHHHHHHHHh
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC
Q 003946 407 EDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSH 486 (784)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p 486 (784)
|..- +.+ ....++.-.|+++.|++.+... . ..
T Consensus 292 Ge~~------------------------------------F~~------lYf~vLlLtgqFE~AI~~L~~~---~---~v 323 (661)
T 2qx5_A 292 GPSR------------------------------------FSN------YYLQTLLLSGLYGLAIDYTYTF---S---EM 323 (661)
T ss_dssp CGGG------------------------------------GTT------CHHHHHHHTTCHHHHHHHHHTT---C---HH
T ss_pred hhhh------------------------------------hhh------HHHHHHHHHhhHHHHHHHHHhc---C---ch
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCC-----H
Q 003946 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA---NRPREVTALLRDARSAGIQLD-----A 558 (784)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~-----~ 558 (784)
|.+++...+.-|.-.+- -+.+......--..-+..||..|.+. .+..+|.++|--+. .++ .
T Consensus 324 dAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al~Y~~li~----l~~g~~~~~ 392 (661)
T 2qx5_A 324 DAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAVEYLVLIT----LNEGPTDVE 392 (661)
T ss_dssp HHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHHHHHHHHHGGG----GSCCHHHHH
T ss_pred hHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHHHHHHHHh----ccCCchHHH
Q ss_pred HHHHHHHHHHHHcCChhHHH-----------HHHHHhHhcCCCCC----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003946 559 SCYEALLQSKIVQKDTPGAL-----------HLFKEMKESKIPRS----GHQEFEMLVKGCAQNHEAGLMAKLLQEVKEG 623 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~-----------~~~~~m~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 623 (784)
..+..+-......++++.-+ .++++-...=-..+ ..........-+...|++++|..+|+...+
T Consensus 393 ~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~- 471 (661)
T 2qx5_A 393 LCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEE- 471 (661)
T ss_dssp HHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcC-
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC----------------HHHHHHHHHHHHhC-----CCCC-CHHHHHHHHH-----HHH
Q 003946 624 QRIDCGVHDWNNVIHFFCKKRL----------------MQDAEKALKRMRSL-----GHLP-NAQTFHSMVT-----GYA 676 (784)
Q Consensus 624 ~~~~p~~~~y~~li~~~~~~g~----------------~~~A~~~~~~m~~~-----g~~p-~~~~~~~ll~-----a~~ 676 (784)
..--+...|.++.-....-. ...|.++.+..... .+.+ +..|+..|+. .+.
T Consensus 472 --~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~ 549 (661)
T 2qx5_A 472 --YDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELY 549 (661)
T ss_dssp --HHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HcCCCHHHHHHHHHHH
Q 003946 677 AIGGKYTEVTELWGEM 692 (784)
Q Consensus 677 ~~g~~~~~a~~~~~~m 692 (784)
+.| +++.|.+.++++
T Consensus 550 ~~g-~~~~AL~~i~~L 564 (661)
T 2qx5_A 550 FNK-QWQETLSQMELL 564 (661)
T ss_dssp HTT-CHHHHHHHHHHT
T ss_pred HcC-CHHHHHHHHHhC
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=35.46 E-value=3.6e+02 Score=27.21 Aligned_cols=224 Identities=14% Similarity=0.069 Sum_probs=110.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHH-
Q 003946 493 HVITLCISLGWLDQAHDLLDEMHLAGVRAS-----SSVYASLLKAYIEANRPREVTALLRDARSA--GIQLDASCYEAL- 564 (784)
Q Consensus 493 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~l- 564 (784)
-+...|...|++.+|.+++..+.+.--+.| ..++-.-+.+|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 577788888888888888887775311111 445666677788888888888888776432 222444332221
Q ss_pred -HH--HHH-HcCChhHHHHHHHHhHhcCCCCCcH-----HHHHHHHHHHHhcCcHHHHHHHHH-HHHhcCCCCCCHHHHH
Q 003946 565 -LQ--SKI-VQKDTPGALHLFKEMKESKIPRSGH-----QEFEMLVKGCAQNHEAGLMAKLLQ-EVKEGQRIDCGVHDWN 634 (784)
Q Consensus 565 -i~--~~~-~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~p~~~~y~ 634 (784)
.. .+. ..+++..|...|-+..+.-....++ ..|. ++.+..... ..+...++. ...... ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYl-vL~aLl~~~-r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYM-LLCKIMLGQ-SDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHTTC-GGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHcCC-HHHHHHHhcccccccc-CCccHHHHH
Confidence 11 223 5678888877776654221111111 1222 222222222 112222221 211112 345666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHH
Q 003946 635 NVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYT 714 (784)
Q Consensus 635 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~ 714 (784)
.++.+| ..+++.+..++++..... +..|......+ ..+.+ . -. ...+.++.+ +-+..+...|...
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~-~~L~~-~-Ir---~~~L~~i~~-------pYsrIsl~~iA~~ 325 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAHL-GTLYD-T-ML---EQNLCRIIE-------PYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHHH-HHHHH-H-HH---HHHHHHHHT-------TCSEEEHHHHHHH
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHHH-HHHHH-H-HH---HHHHHHHhH-------hhceeeHHHHHHH
Confidence 666654 445676666666655432 45555422111 11110 0 00 111112221 0123344445444
Q ss_pred HHhcCChHHHHHHHHHHHhCCC
Q 003946 715 FVRGGFFARANEVVAMMEEGKM 736 (784)
Q Consensus 715 ~~~~g~~~~A~~l~~~m~~~g~ 736 (784)
+.- ..+++...+-+|...|.
T Consensus 326 l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HTC--CHHHHHHHHHHHHHTTS
T ss_pred HCc--CHHHHHHHHHHHHHCCC
Confidence 433 56888888888886653
No 272
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.67 E-value=1.9e+02 Score=23.73 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCC
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW--LDQAHDLLDEMHLAGVRA 521 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~ 521 (784)
..+.++.-|...|+.++|.+.++++.... .-...+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~---f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH---FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG---GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc---cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45678889999999999999999985322 2233445555566655442 456777888887776543
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=33.92 E-value=1.7e+02 Score=22.86 Aligned_cols=85 Identities=13% Similarity=-0.003 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003946 645 LMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARA 724 (784)
Q Consensus 645 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 724 (784)
..++|.-+-+-+...|. ....-.+=+..+...| +|++|..+.+.. .-||.+.|-+|- -.|.|..+++
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG-~Yq~Al~l~~~~--------c~pdlepw~ALc--e~rlGl~s~l 87 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQG-RYQEALAFAHGN--------PWPALEPWFALC--EWHLGLGAAL 87 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTT-CHHHHHGGGTTC--------CCGGGHHHHHHH--HHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcch-hHHHHHHhcCCC--------CCchHHHHHHHH--HHhcccHHHH
Confidence 46777777776665432 1111112234566778 999988765443 257888777663 3578888888
Q ss_pred HHHHHHHHhCCCCCCHHHH
Q 003946 725 NEVVAMMEEGKMFIDKYKY 743 (784)
Q Consensus 725 ~~l~~~m~~~g~~pd~~~~ 743 (784)
...+.++...| .|....|
T Consensus 88 e~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 88 DRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHH
Confidence 88888888775 3433333
No 274
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.84 E-value=1.8e+02 Score=24.79 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCC
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW--LDQAHDLLDEMHLAGVRA 521 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~ 521 (784)
..+.++.-|...|+.++|.+.++++.... .....+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~---f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH---FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG---GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc---chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45678999999999999999999985322 2233445555566655433 456777787777766543
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=32.82 E-value=2.7e+02 Score=24.96 Aligned_cols=71 Identities=13% Similarity=-0.050 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC
Q 003946 521 ASSSVYASLLKAYIE--ANRPREVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR 591 (784)
Q Consensus 521 ~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 591 (784)
-|..-....|..--. ++...++..+|..|..+|+-- -+.-|......+...|++.+|.++|+.-++.+-.|
T Consensus 75 ND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 75 NDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 354444444433222 344556777777776665533 23445556666666677777777777666665544
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.53 E-value=2.5e+02 Score=23.86 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 003946 305 EELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNA 372 (784)
Q Consensus 305 ~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 372 (784)
+++..+|..|...+....... .|......+...|++++|.++|+.=.+++-.|...+...+..|..
T Consensus 82 ~dp~~if~~L~~~~IG~~~Al--fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~ 147 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSP--LYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQT 147 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 347778888877633322221 577777888888888888888887777666666666666666554
No 277
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.50 E-value=1.9e+02 Score=26.73 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=53.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 456 KLVKAFLEAGKTKELTHFLIKAEKENLQVSH----DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 456 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
--++.+....++++|..++++..+.-..+++ +.......+..-.....-.-+..+.+++.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3567888899999999999987643110221 112222333333333333344455555533 345666666777
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 003946 532 AYIEANRPREVTALLRDAR 550 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~ 550 (784)
.+.+.|+.++|..+|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 7788888888887776654
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=30.40 E-value=2e+02 Score=22.54 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 003946 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLF 581 (784)
Q Consensus 502 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 581 (784)
...++|..+-+.+...+. ...+--+=+..+...|++++|..+.+.+. .||...|.+|-.. +.|..+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 356788888887777653 22222233455778899999998877765 7898888887543 557777777777
Q ss_pred HHhHhcC
Q 003946 582 KEMKESK 588 (784)
Q Consensus 582 ~~m~~~~ 588 (784)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6776665
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=29.55 E-value=4.3e+02 Score=26.24 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=59.9
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCC--HHHHHHHHHHHHhhcCCChhhHHHHHHHH
Q 003946 255 TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGR--REELRKLQRHIDEAVNLSDIQFRQFYNCL 332 (784)
Q Consensus 255 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~--~~~A~~l~~~~~~~~~~~~~~~~~~~~~l 332 (784)
..+.+|.-|...|+.++|.+.++++..-.+. ...+...+..+.-+.++ .+...+++..+...+..+... ....+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q---~~~Gf 294 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ---MKRGY 294 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH---HHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH---HHHHH
Confidence 4688899999999999999999998642222 23445555556655443 456777888877766665443 22222
Q ss_pred HHHHHhcC----ChhHHHHHHHHHHHHHH
Q 003946 333 LSCHLKFG----DLNSASKMVLEMLQRAK 357 (784)
Q Consensus 333 i~~~~~~g----~~~~A~~~~~~m~~~~~ 357 (784)
...+.... +...|..++.++..+-+
T Consensus 295 ~~vl~~ldDl~lDiP~A~~~la~~varai 323 (358)
T 3eiq_C 295 ERIYNEIPDINLDVPHSYSVLERFVEECF 323 (358)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHhccHhhcccccHHHHHHHHHHHHH
Confidence 22222222 34566666666666543
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.37 E-value=2.3e+02 Score=26.26 Aligned_cols=93 Identities=13% Similarity=0.017 Sum_probs=59.2
Q ss_pred HHHHHhhhcCChhHHHHHHHhhhhC--CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 258 IALAGCLLFETTRKAEQLLDIMPRI--GVKA----DSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 258 ~ll~~~~~~g~~~~A~~l~~~m~~~--g~~p----d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
--|..+....++++|..++++..+. ++++ +.......+..-.....-..+..+.+++.. ..... .-..
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~~~----~~r~ 96 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNEIV----HLKS 96 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSHH----HHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHH----HHHH
Confidence 3467888899999999998876642 2222 112333334444444444455556666633 22222 3667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHH
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQRA 356 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~ 356 (784)
.+..+.+.|+.++|.++|=+....-
T Consensus 97 ~v~~L~rLg~~~~A~~lfL~~rs~~ 121 (235)
T 2d2s_A 97 GTENMIKLGLPEQALDLFLQNRSNF 121 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHHHHHH
Confidence 7799999999999999998877654
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.10 E-value=1.9e+02 Score=24.96 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 003946 507 AHDLLDEMHLAGVRA-SSSVYASLLKAYIEANRPREVTALLRDARSAGIQLD 557 (784)
Q Consensus 507 a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 557 (784)
+.++|..|...|+-- -...|......+-..|++.+|.++|..-.+.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 445555555555432 234455555555555666666666665555554553
No 282
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=27.01 E-value=73 Score=23.37 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH--HHHhcccccC--CchhhHHHHHHHHHHHHHhhHhhhCCC
Q 003946 722 ARANEVVAMMEEGKMFIDKYKYRTLF--LKYHKTLYKG--KTPKFQTEAQLKKREAALGFKKWLGLC 784 (784)
Q Consensus 722 ~~A~~l~~~m~~~g~~pd~~~~~~li--~~~~~~~~~~--~a~~~~~~~~~~~~e~~~~~~~~~~~~ 784 (784)
.++...+++.++. + .+..+|+.++ ..+.+..-++ .-.+.+.....+..|..++|+.++|.|
T Consensus 9 ~de~~Ff~kVK~~-l-~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~lg~~pdL~~~Fk~Fl~~~ 73 (75)
T 2ld7_B 9 GTESLFFDKVRKA-L-RSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLGYK 73 (75)
T ss_dssp SHHHHHHHHHHHH-H-CSHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHhhhcCcCHHHHHHHHHHHHccCHHHHHHHHHHcCCC
Confidence 4667777777763 2 5678888888 3444444444 445555566667788899999988865
No 283
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=26.16 E-value=7.8e+02 Score=28.14 Aligned_cols=94 Identities=3% Similarity=-0.094 Sum_probs=49.1
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHhhhhCC-CCCChhHHHHHHHHHHhcC-CHHHHHHHHHH----HHhhcCCChhhHHHH
Q 003946 255 TFNIALAGCLLFETTRKAEQLLDIMPRIG-VKADSNLLIIMAHIYERNG-RREELRKLQRH----IDEAVNLSDIQFRQF 328 (784)
Q Consensus 255 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~li~~~~~~g-~~~~A~~l~~~----~~~~~~~~~~~~~~~ 328 (784)
--..++.+++...+.....++++...... +++.. .. .++.+.+... ..+.|.+.+.. +.++-..... .
T Consensus 760 ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~----~ 833 (909)
T 4fke_A 760 EADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQD-AT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSF----S 833 (909)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGGG-HH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCC----C
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchhh-HH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCch----H
Confidence 34667888888888888888888776543 33322 22 2333333322 23344444333 2222111111 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 329 YNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
+..+|...+..-.-++-++-++.+.+
T Consensus 834 ~~~~i~~~~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 834 FSNLIQGVTRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 67777777665555555555555544
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=25.82 E-value=1.8e+02 Score=24.73 Aligned_cols=51 Identities=12% Similarity=0.054 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC
Q 003946 541 EVTALLRDARSAGIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR 591 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 591 (784)
++..+|..|..+|+-.. +.-|......+-..|++++|.++|+.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 36666676666654332 3345555555666666666666666666655444
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.47 E-value=37 Score=31.37 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=48.0
Q ss_pred HHHHhhhcCChhHHHHHHHhhhhCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 003946 259 ALAGCLLFETTRKAEQLLDIMPRIGVKADSN--LLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCH 336 (784)
Q Consensus 259 ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (784)
.|...++.|+.+....+++.+.+.|..++.. .-.+.+...+..|+.+-+..+++.-......+.. ..+.+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-----g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRH-----GQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCC-----CCCHHHHH
Confidence 3455667899998888888777666555432 1224456667788887666665532111111111 22334445
Q ss_pred HhcCChhHHHHHH
Q 003946 337 LKFGDLNSASKMV 349 (784)
Q Consensus 337 ~~~g~~~~A~~~~ 349 (784)
++.|+.+-+..++
T Consensus 87 ~~~~~~~~~~~Ll 99 (241)
T 1k1a_A 87 CEHRSPTCLRALL 99 (241)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 5677765444433
No 286
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.00 E-value=2.1e+02 Score=25.56 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhcCCChhh--HHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003946 304 REELRKLQRHIDEAVNLSDIQ--FRQFYNCLLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 304 ~~~A~~l~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
++.|..+++.+.+... .... -..+--..+..|.+.|.+++|.++|++.-..
T Consensus 94 LESAl~v~~~I~~e~~-~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHD-KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 6778888877765421 1111 0113456677899999999999999996654
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.74 E-value=2.1e+02 Score=24.72 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC
Q 003946 521 ASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR 591 (784)
Q Consensus 521 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 591 (784)
-|..-....|..--.+ +.+..+|..|..+|+-.. +.-|......+-..|++.+|.++|+.-++.+-.|
T Consensus 61 nD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp TCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3555555444322223 335667777776665433 3345555666666677777777777766666544
No 288
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.33 E-value=1.4e+02 Score=26.14 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=9.5
Q ss_pred HHhccchhhHHHHHHH
Q 003946 100 AINEHRYGDAWKLYEQ 115 (784)
Q Consensus 100 ~~~~~~~~~A~~l~~~ 115 (784)
.+..|+.+....++..
T Consensus 12 A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 12 AANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHTTCHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHc
Confidence 3456776666666653
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=22.09 E-value=91 Score=28.50 Aligned_cols=18 Identities=17% Similarity=0.001 Sum_probs=9.2
Q ss_pred HhhhcCChhHHHHHHHhh
Q 003946 262 GCLLFETTRKAEQLLDIM 279 (784)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m 279 (784)
..+..|+.+-...+++..
T Consensus 85 ~A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHHTTCHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHcC
Confidence 334556665555555443
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.91 E-value=5.5e+02 Score=24.81 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=57.4
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCC--HHHHHHHHHHHHhhcCCChhhHHHHHHHH
Q 003946 255 TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGR--REELRKLQRHIDEAVNLSDIQFRQFYNCL 332 (784)
Q Consensus 255 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~--~~~A~~l~~~~~~~~~~~~~~~~~~~~~l 332 (784)
..+.+|.-|...|+.++|.+.++++....+. ...+...+..+.-+.++ .+...+++..+.+.+..+... ....+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q---~~~Gf 243 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ---MKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH---HHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH---HHHHH
Confidence 4567888888889999999999888632221 12445555555555433 455667888887766665443 12222
Q ss_pred HHHHHhcC----ChhHHHHHHHHHHHHHH
Q 003946 333 LSCHLKFG----DLNSASKMVLEMLQRAK 357 (784)
Q Consensus 333 i~~~~~~g----~~~~A~~~~~~m~~~~~ 357 (784)
-..+.... |...|..++.++..+.+
T Consensus 244 ~~vl~~l~Dl~lDiP~A~~~la~~v~~ai 272 (307)
T 2zu6_B 244 ERIYNEIPDINLDVPHSYSVLERFVEECF 272 (307)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHhccHhhcccccHHHHHHHHHHHHH
Confidence 22222222 34466666666665543
No 291
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.58 E-value=2.8e+02 Score=21.41 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCCCCHHHHHHHH
Q 003946 685 VTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMME-----EGKMFIDKYKYRTLF 747 (784)
Q Consensus 685 a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~~~~~~li 747 (784)
+..+.+++.. .|+.|+..+..-++..|...+- .+.++.++.. ..|..|+..+.+.+=
T Consensus 28 ae~L~eEfde----fGi~~~d~VldKc~ELC~~y~l--da~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 28 AQQLAEELQI----FGLDCEEALIEKLVELCVQYGQ--NEEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp HHHHHHHHHH----HTCBCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 4455555555 4677777777777777766654 1444333332 346677776666553
No 292
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.25 E-value=1.4e+02 Score=29.56 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=11.0
Q ss_pred HHHHHHhhhcCChhHHHHHHHhh
Q 003946 257 NIALAGCLLFETTRKAEQLLDIM 279 (784)
Q Consensus 257 ~~ll~~~~~~g~~~~A~~l~~~m 279 (784)
..++.-|...|+.++|...++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34444444445555554444444
No 293
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.53 E-value=88 Score=28.59 Aligned_cols=86 Identities=14% Similarity=0.005 Sum_probs=48.4
Q ss_pred HHHhhhcCChhHHHHHHHhhhhCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHH
Q 003946 260 LAGCLLFETTRKAEQLLDIMPRIGVKADSN--LLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHL 337 (784)
Q Consensus 260 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~ 337 (784)
+...++.|+.+-+ +.+.+.|..++.. .-.+.+...++.|+.+-+.-+++.-......+.. ..+-+...+
T Consensus 148 L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~-----g~t~l~~A~ 218 (237)
T 3b7b_A 148 LHWAAFSGCVDIA----EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKE-----GETPLQCAS 218 (237)
T ss_dssp HHHHHHHCCHHHH----HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT-----SCCHHHHSC
T ss_pred HHHHHHCCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCC-----CCCHHHHHH
Confidence 4444556776544 4444555555432 1224456667788887666665432211122211 345556667
Q ss_pred hcCChhHHHHHHHHHHH
Q 003946 338 KFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 338 ~~g~~~~A~~~~~~m~~ 354 (784)
+.|+.+.++++.+.+++
T Consensus 219 ~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQD 235 (237)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 78888888888887765
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.26 E-value=2.6e+02 Score=25.56 Aligned_cols=50 Identities=6% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 507 AHDLLDEMHLAGVRAS-SSVYASLLKAYIEANRPREVTALLRDARSAGIQL 556 (784)
Q Consensus 507 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 556 (784)
+..+|..|...|+--. ...|......+-..|++.+|..+|+.-.+.+-.|
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
No 295
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.14 E-value=4.7e+02 Score=23.38 Aligned_cols=92 Identities=9% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHhHhcCCCCCcHHHHHHH
Q 003946 529 LLKAYIEA---NRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD-----TPGALHLFKEMKESKIPRSGHQEFEML 600 (784)
Q Consensus 529 li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~~~~~~~~~~l 600 (784)
+|+++-|+ .+.+.|+-.+-+|.+.| .|..+.-..++-+.-..|. +..|...++.....|. |.......-.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~-PE~~i~Laqa 94 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL-PEARIPLADV 94 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT-TTTHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC-CHHHHHHHHH
Q ss_pred HHHHHhcCcHHHHHHHHHHHHh
Q 003946 601 VKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 601 l~~~~~~~~~~~a~~~~~~~~~ 622 (784)
+--++..-+-..+...++...+
T Consensus 95 viyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 95 VVDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHHHHH
Done!