BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003947
(784 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 1179 bits (3050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/774 (74%), Positives = 645/774 (83%), Gaps = 9/774 (1%)
Query: 19 IERLGCGIYKRQQILSLVDA-------ESNGAAIADVLNATQEAAVSSPWVALALRTSPG 71
+E G GI ++ QI++ +A + G D+L +TQEA V PWVALA+R PG
Sbjct: 36 VEAKGKGILQQNQIIAEFEALPEQTRKKLEGGPFFDLLKSTQEAIVLPPWVALAVRPRPG 95
Query: 72 VWCYIRVNVQTVDVEEISVSKYLLFKEEIVDGRKSNGNFAFEVDFEPFRA-LPHPTLSNS 130
VW Y+RVN+ + VEE+ +++L FKEE+VDG K NGNF E+DFEPF A +P PTL
Sbjct: 96 VWEYLRVNLHALVVEELQPAEFLHFKEELVDGVK-NGNFTLELDFEPFNASIPRPTLHKY 154
Query: 131 IGHGMEFLNRHMSAKLFNDKESMQSLLEFLRVHSHMGKNMMLNEKIQDLGTLQSSLRMAE 190
IG+G++FLNRH+SAKLF+DKES+ LL+FLR+HSH GKN+ML+EKIQ+L TLQ +LR AE
Sbjct: 155 IGNGVDFLNRHLSAKLFHDKESLLPLLKFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAE 214
Query: 191 KYLSMLAPDTSYAEFEQKFQEIGLERGWGDNAEHVLGMIQXXXXXXQAPESSTLETFLGK 250
+YL+ L +T Y EFE KF+EIGLERGWGDNAE VL MI+ +AP+ TLETFLG+
Sbjct: 215 EYLAELKSETLYEEFEAKFEEIGLERGWGDNAERVLDMIRLLLDLLEAPDPCTLETFLGR 274
Query: 251 IPRVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGXXXXXXX 310
+P VFNVVI +PHGYFAQDNVLGYPDTGGQVVYILDQVRALE EML RIKQQG
Sbjct: 275 VPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRI 334
Query: 311 XXXXXXXXXAVGTTCGQRVEKVYGTKYSDILRVPFRTEEGIVRKWISRFEVWPYLETFTE 370
AVGTTCG+R+E+VY ++Y DILRVPFRTE+GIVRKWISRFEVWPYLET+TE
Sbjct: 335 LILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTE 394
Query: 371 DVATEIIQELQCKPDLIIGNYSDGNIVASLLAHKLDVTQCTIAHALELTKYPDSDINWKK 430
D A E+ +EL KPDLIIGNYSDGN+VASLLAHKL VTQCTIAHALE TKYPDSDI WKK
Sbjct: 395 DAAVELSKELNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKK 454
Query: 431 LDDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGI 490
LDDKYHFSCQFTAD+FAMN TDFIITSTFQEIAGSK+TVGQYESHTAF+LPGLYRVV+GI
Sbjct: 455 LDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGI 514
Query: 491 DAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPI 550
D FDPKFNIVSPGADM+IYFPY EEKRRL FHSEIEELLYS VENKEHLCVLKD KPI
Sbjct: 515 DVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPI 574
Query: 551 LFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLID 610
LFTMARLDRVKNL+GLVEWYGKN +LREL NLVVVGGDRRKESKD EE+AEMKKMY LI+
Sbjct: 575 LFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIE 634
Query: 611 TYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT 670
YKLNGQFRWISSQM+RVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT
Sbjct: 635 EYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT 694
Query: 671 CNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYT 730
C GGPAEIIVHGKSGFHIDPY GDQA L DFF KCK DP HWDEIS+GGL+RI+EKYT
Sbjct: 695 CKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYT 754
Query: 731 WKIYSERLLNLSGVYGFWKHLSKLDCREKNRYLEMFYSLMYRKQVQTVPLAVDE 784
W+IYS+RLL L+GVYGFWKH+S LD E RYLEMFY+L YR Q VPLA D+
Sbjct: 755 WQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFYALKYRPLAQAVPLAQDD 808
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 1144 bits (2958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/774 (72%), Positives = 634/774 (81%), Gaps = 9/774 (1%)
Query: 19 IERLGCGIYKRQQILSLVDA-------ESNGAAIADVLNATQEAAVSSPWVALALRTSPG 71
+E G GI ++ QI++ +A + G D+L +TQEA V PWVALA+R PG
Sbjct: 36 VEAKGKGILQQNQIIAEFEALPEQTRKKLEGGPFFDLLKSTQEAIVLPPWVALAVRPRPG 95
Query: 72 VWCYIRVNVQTVDVEEISVSKYLLFKEEIVDGRKSNGNFAFEVDFEPFRA-LPHPTLSNS 130
VW Y+RVN+ + VEE+ +++L FKEE+VDG K NGNF E+DFEPF A +P PTL
Sbjct: 96 VWEYLRVNLHALVVEELQPAEFLHFKEELVDGVK-NGNFTLELDFEPFNASIPRPTLHKY 154
Query: 131 IGHGMEFLNRHMSAKLFNDKESMQSLLEFLRVHSHMGKNMMLNEKIQDLGTLQSSLRMAE 190
IG+G++FLNRH+SAKLF+DKES+ LL+FLR+HSH GKN+ L+EKIQ+L TLQ +LR AE
Sbjct: 155 IGNGVDFLNRHLSAKLFHDKESLLPLLKFLRLHSHQGKNLXLSEKIQNLNTLQHTLRKAE 214
Query: 191 KYLSMLAPDTSYAEFEQKFQEIGLERGWGDNAEHVLGMIQXXXXXXQAPESSTLETFLGK 250
+YL+ L +T Y EFE KF+EIGLERGWGDNAE VL I+ +AP+ TLETFLG+
Sbjct: 215 EYLAELKSETLYEEFEAKFEEIGLERGWGDNAERVLDXIRLLLDLLEAPDPCTLETFLGR 274
Query: 251 IPRVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGXXXXXXX 310
+P VFNVVI +PHGYFAQDNVLGYPDTGGQVVYILDQVRALE E L RIKQQG
Sbjct: 275 VPXVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEXLQRIKQQGLNIKPRI 334
Query: 311 XXXXXXXXXAVGTTCGQRVEKVYGTKYSDILRVPFRTEEGIVRKWISRFEVWPYLETFTE 370
AVGTTCG+R+E+VY ++Y DILRVPFRTE+GIVRKWISRFEVWPYLET+TE
Sbjct: 335 LILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTE 394
Query: 371 DVATEIIQELQCKPDLIIGNYSDGNIVASLLAHKLDVTQCTIAHALELTKYPDSDINWKK 430
D A E+ +EL KPDLIIGNYSDGN+VASLLAHKL VTQCTIAHALE TKYPDSDI WKK
Sbjct: 395 DAAVELSKELNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKK 454
Query: 431 LDDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGI 490
LDDKYHFSCQFTAD+FA N TDFIITSTFQEIAGSK+TVGQYESHTAF+LPGLYRVV+GI
Sbjct: 455 LDDKYHFSCQFTADIFAXNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGI 514
Query: 491 DAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPI 550
D FDPKFNIVSPGAD +IYFPY EEKRRL FHSEIEELLYS VENKEHLCVLKD KPI
Sbjct: 515 DVFDPKFNIVSPGADXSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPI 574
Query: 551 LFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLID 610
LFT ARLDRVKNL+GLVEWYGKN +LREL NLVVVGGDRRKESKD EE+AE KK Y LI+
Sbjct: 575 LFTXARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEXKKXYDLIE 634
Query: 611 TYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT 670
YKLNGQFRWISSQ +RVRNGELYRYICDTKGAFVQPALYEAFGLTVVEA TCGLPTFAT
Sbjct: 635 EYKLNGQFRWISSQXDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAXTCGLPTFAT 694
Query: 671 CNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYT 730
C GGPAEIIVHGKSGFHIDPY GDQA L DFF KCK DP HWDEIS+GGL+RI+EKYT
Sbjct: 695 CKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYT 754
Query: 731 WKIYSERLLNLSGVYGFWKHLSKLDCREKNRYLEMFYSLMYRKQVQTVPLAVDE 784
W+IYS+RLL L+GVYGFWKH+S LD E RYLE FY+L YR Q VPLA D+
Sbjct: 755 WQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEXFYALKYRPLAQAVPLAQDD 808
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 136/494 (27%), Positives = 213/494 (43%), Gaps = 61/494 (12%)
Query: 250 KIPRVFNVVIFTPHGYF--AQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGXXXX 307
++ R+ +V P G F A +PD GGQ+VY+ E+ L + + G
Sbjct: 3 EMTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYV--------KEVSLALAEMGVQVD 54
Query: 308 XXXXXXXXXXXXAVGTTCGQRVEKVYGTKYSDILRVPFRTEEGIVRKWISRFEVWPYLET 367
E T I+R+PF + K++ + E+WPYL
Sbjct: 55 IITRRIKDENWPEFSGEIDYYQE----TNKVRIVRIPFGGD-----KFLPKEELWPYLHE 105
Query: 368 FTEDVATEIIQELQCKPDLIIGNYSDGNIVASLLAHKLDVTQCTIAHALELTKYPDSDIN 427
+ + +E + P ++ +Y DG + LL + + H+L K ++N
Sbjct: 106 YVNKIINFYREEGKF-PQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVN 164
Query: 428 ---WKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLY 484
+K++D+++ F + A+ M+ D II ST QE GQY SH LY
Sbjct: 165 TSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQE------RFGQY-SHD------LY 211
Query: 485 R-VVNGIDAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVL 543
R VN D D KF+++ PG + ++ +K + K +E L S E + +
Sbjct: 212 RGAVNVED--DDKFSVIPPGVNTRVFDGEYGDKIKAK-ITKYLERDLGS-----ERMEL- 262
Query: 544 KDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDL-----EE 598
P + +RLD+ KN GLVE Y +N +L++ NLV+ +D EE
Sbjct: 263 -----PAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEE 317
Query: 599 QAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVV 658
+ + K+ LID G+ + G Y Y+ F + YE FGL V
Sbjct: 318 KEILGKIIELIDNNDCRGKVSMFPLNSQQELAG-CYAYLASKGSVFALTSFYEPFGLAPV 376
Query: 659 EAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHWDEIS 718
EAM GLP T NGGPAEI+ GK G +DP + L+ FE + W
Sbjct: 377 EAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEET----WSAYQ 432
Query: 719 QGGLKRIQEKYTWK 732
+ G +R++E+YTW+
Sbjct: 433 EKGKQRVEERYTWQ 446
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/232 (18%), Positives = 95/232 (40%), Gaps = 30/232 (12%)
Query: 519 LKHFHSEIEELLYSPVENKEHLCVLKD----SSKPILFTMARLDRVKNLTGLVEWYGKNA 574
+H S ++ ++P ++ K + P++ +RL K L++ +
Sbjct: 165 FEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVI 224
Query: 575 KLRELVNLVVVGGDR-----RKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVR 629
R L++VG R R+ + D+ + K G+ + +N +
Sbjct: 225 AARPDAQLLIVGSGRYESTLRRLATDVSQN------------VKFLGRLEY-QDMINTLA 271
Query: 630 NGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHID 689
+++ T+G + E G+ +EA CG+P A +GG E + +G ++
Sbjct: 272 AADIFAMPARTRGGGLD---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVE 327
Query: 690 PYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNL 741
D+ + +L++ + DP + G ++ +++W+I ERL N+
Sbjct: 328 GSDVDKLSELLIELLD----DPIRRAAMGAAGRAHVEAEWSWEIMGERLTNI 375
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/232 (18%), Positives = 95/232 (40%), Gaps = 30/232 (12%)
Query: 519 LKHFHSEIEELLYSPVENKEHLCVLKD----SSKPILFTMARLDRVKNLTGLVEWYGKNA 574
+H S ++ ++P ++ K + P++ +RL K L++ +
Sbjct: 165 FEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVI 224
Query: 575 KLRELVNLVVVGGDR-----RKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVR 629
R L++VG R R+ + D+ + K G+ + +N +
Sbjct: 225 AARPDAQLLIVGSGRYESTLRRLATDVSQN------------VKFLGRLEY-QDMINTLA 271
Query: 630 NGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHID 689
+++ T+G + E G+ +EA CG+P A +GG E + +G ++
Sbjct: 272 AADIFAMPARTRGGGLD---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVE 327
Query: 690 PYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNL 741
D+ + +L++ + DP + G ++ +++W+I ERL N+
Sbjct: 328 GSDVDKLSELLIELLD----DPIRRAAMGAAGRAHVEAEWSWEIMGERLTNI 375
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 651 EAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGF 686
E+FGL ++EAM CG+P T GG E+I HG +G+
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGY 330
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 651 EAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGF 686
E+FGL ++EAM CG+P T GG E+I HG +G+
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGY 350
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 34/212 (16%)
Query: 545 DSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRR----------KESK 594
D KPI+ ++R D K + ++E Y K + V L++VG K +
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLR 287
Query: 595 DLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFG 654
+ E ++K + LI + R ++ D +Q ++ E FG
Sbjct: 288 KIGEDYDVKVLTNLIGVH---------------AREVNAFQRASDV---ILQMSIREGFG 329
Query: 655 LTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHW 714
LTV EAM G P GG IV G++GF + ++A +++ + +V
Sbjct: 330 LTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--DANEAVEVVLYLLKHPEVS---- 383
Query: 715 DEISQGGLKRIQEKYTWKIYSERLLNLSGVYG 746
E+ +R+++ + + ER L++ G
Sbjct: 384 KEMGAKAKERVRKNFIITKHMERYLDILNSLG 415
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 34/212 (16%)
Query: 545 DSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRR----------KESK 594
D KPI+ ++R D K + ++E Y K + V L++VG K +
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVXAHDDPEGWIYFEKTLR 287
Query: 595 DLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFG 654
+ E ++K + LI + R ++ D +Q ++ E FG
Sbjct: 288 KIGEDYDVKVLTNLIGVH---------------AREVNAFQRASDV---ILQXSIREGFG 329
Query: 655 LTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHW 714
LTV EA G P GG IV G++GF + ++A +++ + +V
Sbjct: 330 LTVTEAXWKGKPVIGRAVGGIKFQIVDGETGFLV--RDANEAVEVVLYLLKHPEVS---- 383
Query: 715 DEISQGGLKRIQEKYTWKIYSERLLNLSGVYG 746
E +R+++ + + ER L++ G
Sbjct: 384 KEXGAKAKERVRKNFIITKHXERYLDILNSLG 415
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 34/212 (16%)
Query: 545 DSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRR----------KESK 594
D KPI+ ++R D K + ++E Y K + V L++VG K +
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLR 287
Query: 595 DLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFG 654
+ E ++K + LI + R ++ D +Q ++ FG
Sbjct: 288 KIGEDYDVKVLTNLIGVH---------------AREVNAFQRASDV---ILQMSIRAGFG 329
Query: 655 LTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHW 714
LTV EAM G P GG IV G++GF + ++A +++ + +V
Sbjct: 330 LTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--DANEAVEVVLYLLKHPEVS---- 383
Query: 715 DEISQGGLKRIQEKYTWKIYSERLLNLSGVYG 746
E+ +R+++ + + ER L++ G
Sbjct: 384 KEMGAKAKERVRKNFIITKHMERYLDILNSLG 415
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 576 LRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYR 635
++E V +V++G ++K K L+ E K G+ R + N L
Sbjct: 353 MQEDVQIVLLGTGKKKFEKLLKSMEE-----------KYPGKVRAVVK-----FNAPLAH 396
Query: 636 YICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHI 688
I P+ +E GL ++ M G P GG + ++ GK+GFH+
Sbjct: 397 LIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHM 449
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 644 FVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHI-DPYKGDQATGIL 700
+ PA EA G+ ++EA+T GLP T G A I G I +P+ +Q +L
Sbjct: 274 LLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVL 331
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 647 PALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHID---PYKGDQATGILVD 702
P+ E+FGL +EA G P A GG + G++G +D P+ A L+D
Sbjct: 312 PSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLD 370
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 58/204 (28%)
Query: 554 MARLDR----VKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKE--SKDLEEQAEMKKMYG 607
+ R DR V L +E + +E+ +++ GD E ++ LEE+
Sbjct: 257 IGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-------- 308
Query: 608 LIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPT 667
+G + I+ ++R E R + + + P+ +E FGL +EAM G
Sbjct: 309 -------HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP 357
Query: 668 FATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHWD-------EISQG 720
A+ GG +II + TGILV DPG E+S+
Sbjct: 358 IASAVGGLRDIITN--------------ETGILVK-----AGDPGELANAILKALELSRS 398
Query: 721 GLKRIQE-------KYTWKIYSER 737
L + +E ++W+ +ER
Sbjct: 399 DLSKFRENCKKRAMSFSWEKSAER 422
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 58/204 (28%)
Query: 554 MARLDR----VKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKE--SKDLEEQAEMKKMYG 607
+ R DR V L +E + +E+ +++ GD E ++ LEE+
Sbjct: 258 IGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-------- 309
Query: 608 LIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPT 667
+G + I+ ++R E R + + + P+ +E FGL +EAM G
Sbjct: 310 -------HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP 358
Query: 668 FATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHWD-------EISQG 720
A+ GG +II + TGILV DPG E+S+
Sbjct: 359 IASAVGGLRDIITN--------------ETGILVK-----AGDPGELANAILKALELSRS 399
Query: 721 GLKRIQE-------KYTWKIYSER 737
L + +E ++W+ +ER
Sbjct: 400 DLSKFRENCKKRAMSFSWEKSAER 423
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 646 QPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHI-DPYKGDQATGIL 700
PA EA G+ ++EA+T GLP T G A I G I +P+ +Q +L
Sbjct: 276 HPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVL 331
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 647 PALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHID---PYKGDQATGILVD 702
P+ E+FGL +EA G P A GG + G++G +D P+ A L+D
Sbjct: 332 PSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLD 390
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 36/193 (18%)
Query: 554 MARLDR----VKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKE--SKDLEEQAEMKKMYG 607
+ R DR V L +E + +E+ +++ GD E ++ LEE+
Sbjct: 257 IGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-------- 308
Query: 608 LIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPT 667
+G + I+ ++R E R + + + P+ +E FGL +EAM G
Sbjct: 309 -------HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP 357
Query: 668 FATCNGGPAEIIVHGKSGFHI---DPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKR 724
A+ GG +II + ++G + DP G+ A IL E + D + E K+
Sbjct: 358 IASAVGGLRDIITN-ETGILVKAGDP--GELANAIL-KALELSRSDLSKFRE----NCKK 409
Query: 725 IQEKYTWKIYSER 737
++W+ +ER
Sbjct: 410 RAMSFSWEKSAER 422
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 31/156 (19%)
Query: 554 MARLDR----VKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKE--SKDLEEQAEMKKMYG 607
+ R DR V L +E + +E+ +++ GD E ++ LEE+
Sbjct: 42 IGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-------- 93
Query: 608 LIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPT 667
+G + I+ ++R E R + + + P+ +E FGL +EAM G
Sbjct: 94 -------HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP 142
Query: 668 FATCNGGPAEIIVHGKSGFHI---DPYKGDQATGIL 700
A+ GG +II + ++G + DP G+ A IL
Sbjct: 143 IASAVGGLRDIITN-ETGILVKAGDP--GELANAIL 175
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 651 EAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVD 710
E FGLT +EA G P A GG E +++ K+G+ ++ + ++D +K +
Sbjct: 108 EDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYLVNADVNE-----IIDAXKKVSKN 162
Query: 711 PGHWDEISQGGLKRIQE 727
P D+ + +R +E
Sbjct: 163 P---DKFKKDCFRRAKE 176
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 41/171 (23%)
Query: 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWI-----SSQMNRVRNGELY 634
V +++VG R + +L EQA L G R++ +++ + +R+ ++Y
Sbjct: 241 VEILIVG---RGDEDELREQAG-----------DLAGHLRFLGQVDDATKASAMRSADVY 286
Query: 635 RYICDTKGAFVQPALY-EAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKG 693
C P L E+FG+ +VEAM G A+ ++ G +G +
Sbjct: 287 ---C-------APHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDA 336
Query: 694 DQATGILVDFFEKCKVDPGHWDEISQGGLKRIQE---KYTWKIYSERLLNL 741
D L+ E D++ G + R E +Y W + S +++ +
Sbjct: 337 DGMAAALIGILED--------DQLRAGYVARASERVHRYDWSVVSAQIMRV 379
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 337 YSDILRVPFRTEEGIVRKWISRFEVWPYLETFTE 370
Y+D R + TE+G+V + + EV PY++ FTE
Sbjct: 526 YTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTE 559
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 410 CTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAM 448
C +A+ + T +PD+ N+ LDD Y+F Q + A+
Sbjct: 410 CRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAI 448
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,926,842
Number of Sequences: 62578
Number of extensions: 966674
Number of successful extensions: 2047
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2005
Number of HSP's gapped (non-prelim): 31
length of query: 784
length of database: 14,973,337
effective HSP length: 107
effective length of query: 677
effective length of database: 8,277,491
effective search space: 5603861407
effective search space used: 5603861407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)