Query 003947
Match_columns 784
No_of_seqs 374 out of 3517
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 100.0 2E-176 5E-181 1577.0 67.1 783 1-784 14-808 (816)
2 2r60_A Glycosyl transferase, g 100.0 9.2E-46 3.2E-50 423.3 37.0 434 251-745 4-459 (499)
3 3fro_A GLGA glycogen synthase; 100.0 2E-43 6.8E-48 393.2 35.9 401 254-744 2-429 (439)
4 3c48_A Predicted glycosyltrans 100.0 2E-43 7E-48 395.4 35.5 404 253-744 19-424 (438)
5 3vue_A GBSS-I, granule-bound s 100.0 4.3E-42 1.5E-46 398.4 33.0 329 382-746 152-512 (536)
6 3okp_A GDP-mannose-dependent a 100.0 2.8E-40 9.7E-45 363.0 33.2 368 253-744 3-378 (394)
7 2qzs_A Glycogen synthase; glyc 100.0 4.8E-40 1.6E-44 374.0 32.2 426 255-744 1-475 (485)
8 1rzu_A Glycogen synthase 1; gl 100.0 1E-39 3.5E-44 371.3 32.8 432 255-744 1-474 (485)
9 2jjm_A Glycosyl transferase, g 100.0 4.8E-39 1.6E-43 355.7 34.6 358 275-744 24-384 (394)
10 2iw1_A Lipopolysaccharide core 100.0 5.1E-40 1.8E-44 358.8 16.8 367 255-745 1-371 (374)
11 2gek_A Phosphatidylinositol ma 100.0 5.6E-39 1.9E-43 354.5 24.7 363 252-744 18-382 (406)
12 2x6q_A Trehalose-synthase TRET 100.0 6E-38 2.1E-42 349.4 30.4 287 382-744 125-413 (416)
13 3oy2_A Glycosyltransferase B73 100.0 7.4E-37 2.5E-41 339.9 25.8 359 255-744 1-389 (413)
14 2iuy_A Avigt4, glycosyltransfe 100.0 4.3E-36 1.5E-40 325.7 24.5 311 254-744 3-334 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 3.2E-33 1.1E-37 314.1 14.5 346 252-737 44-402 (413)
16 1f0k_A MURG, UDP-N-acetylgluco 100.0 8.7E-31 3E-35 285.7 27.0 337 254-744 6-356 (364)
17 3nb0_A Glycogen [starch] synth 100.0 3.7E-30 1.3E-34 297.7 26.4 335 382-744 180-632 (725)
18 2hy7_A Glucuronosyltransferase 100.0 2E-31 7E-36 298.3 9.2 245 383-744 124-378 (406)
19 2vsy_A XCC0866; transferase, g 100.0 3E-28 1E-32 282.4 29.6 173 537-744 368-558 (568)
20 1uqt_A Alpha, alpha-trehalose- 100.0 4.3E-28 1.5E-32 277.2 26.7 316 382-744 122-453 (482)
21 3beo_A UDP-N-acetylglucosamine 100.0 7.2E-29 2.5E-33 271.3 18.7 275 383-742 95-373 (375)
22 1vgv_A UDP-N-acetylglucosamine 100.0 2.6E-28 9E-33 268.0 16.7 285 383-746 86-377 (384)
23 2bfw_A GLGA glycogen synthase; 99.9 6.6E-27 2.3E-31 233.9 20.4 190 500-730 2-200 (200)
24 3t5t_A Putative glycosyltransf 99.9 5.7E-25 2E-29 250.0 25.3 327 367-744 132-472 (496)
25 3qhp_A Type 1 capsular polysac 99.9 2.1E-25 7.1E-30 216.5 18.0 163 548-737 2-166 (166)
26 1v4v_A UDP-N-acetylglucosamine 99.9 7.6E-24 2.6E-28 232.3 19.7 270 381-743 89-362 (376)
27 2f9f_A First mannosyl transfer 99.9 4.8E-23 1.6E-27 203.4 12.7 151 545-720 20-173 (177)
28 2xci_A KDO-transferase, 3-deox 99.9 1.1E-22 3.8E-27 225.2 16.3 206 446-730 149-365 (374)
29 3otg_A CALG1; calicheamicin, T 99.8 6.9E-19 2.3E-23 195.0 24.1 162 546-743 241-408 (412)
30 3rhz_A GTF3, nucleotide sugar 99.8 2.3E-19 8E-24 196.1 18.7 247 381-739 72-330 (339)
31 3s2u_A UDP-N-acetylglucosamine 99.8 1.3E-17 4.5E-22 183.9 23.9 345 253-744 1-357 (365)
32 2iyf_A OLED, oleandomycin glyc 99.8 8.8E-17 3E-21 179.6 28.8 162 546-743 231-399 (430)
33 3dzc_A UDP-N-acetylglucosamine 99.7 1.3E-17 4.4E-22 186.1 15.9 277 382-741 110-393 (396)
34 3tsa_A SPNG, NDP-rhamnosyltran 99.7 1.5E-17 5E-22 183.4 13.9 162 547-743 218-388 (391)
35 4fzr_A SSFS6; structural genom 99.7 1.1E-17 3.8E-22 185.2 11.3 156 546-740 226-397 (398)
36 3ot5_A UDP-N-acetylglucosamine 99.7 7.3E-17 2.5E-21 180.4 16.9 274 382-740 113-390 (403)
37 3oti_A CALG3; calicheamicin, T 99.7 4.3E-16 1.5E-20 172.5 19.2 157 546-742 231-396 (398)
38 3ia7_A CALG4; glycosysltransfe 99.7 3.3E-15 1.1E-19 164.4 26.0 161 546-743 230-398 (402)
39 3rsc_A CALG2; TDP, enediyne, s 99.6 4.4E-14 1.5E-18 156.8 28.3 161 546-743 246-413 (415)
40 2p6p_A Glycosyl transferase; X 99.6 3.6E-14 1.2E-18 155.9 22.6 156 547-742 210-378 (384)
41 2yjn_A ERYCIII, glycosyltransf 99.5 5.7E-13 1.9E-17 149.8 18.9 157 548-743 268-435 (441)
42 4hwg_A UDP-N-acetylglucosamine 99.5 1.8E-13 6.2E-18 152.0 12.8 272 382-741 93-373 (385)
43 2c4m_A Glycogen phosphorylase; 99.4 3.7E-13 1.3E-17 158.5 14.3 332 383-745 289-719 (796)
44 3h4t_A Glycosyltransferase GTF 99.4 6.9E-12 2.4E-16 139.6 22.5 156 546-743 220-382 (404)
45 2iya_A OLEI, oleandomycin glyc 99.4 5E-11 1.7E-15 132.9 29.3 161 546-743 254-421 (424)
46 2gj4_A Glycogen phosphorylase, 99.4 1.5E-11 5E-16 145.4 23.8 230 444-700 431-710 (824)
47 1l5w_A Maltodextrin phosphoryl 99.4 3.2E-12 1.1E-16 150.5 17.6 333 383-745 299-730 (796)
48 1iir_A Glycosyltransferase GTF 99.3 4.5E-11 1.6E-15 133.2 19.8 154 547-742 238-399 (415)
49 3q3e_A HMW1C-like glycosyltran 99.3 2.9E-11 1E-15 139.9 15.2 187 540-749 433-628 (631)
50 1rrv_A Glycosyltransferase GTF 99.3 1.6E-10 5.3E-15 128.8 20.1 152 547-741 237-399 (416)
51 4amg_A Snogd; transferase, pol 99.2 4.8E-11 1.7E-15 131.3 14.9 158 546-741 236-398 (400)
52 2o6l_A UDP-glucuronosyltransfe 98.9 2.1E-09 7.3E-14 104.5 9.8 133 547-718 21-162 (170)
53 4gyw_A UDP-N-acetylglucosamine 98.0 9.6E-05 3.3E-09 88.3 17.9 183 536-744 513-704 (723)
54 2pq6_A UDP-glucuronosyl/UDP-gl 97.9 0.0034 1.2E-07 71.1 27.7 152 547-725 295-453 (482)
55 2vch_A Hydroquinone glucosyltr 97.8 0.009 3.1E-07 67.7 29.3 70 627-704 346-427 (480)
56 2c1x_A UDP-glucose flavonoid 3 97.8 0.003 1E-07 71.1 24.6 148 546-724 270-425 (456)
57 2acv_A Triterpene UDP-glucosyl 97.7 0.007 2.4E-07 68.3 25.6 134 547-704 276-423 (463)
58 1ygp_A Yeast glycogen phosphor 97.5 0.0019 6.4E-08 76.6 18.0 145 538-690 584-761 (879)
59 3hbf_A Flavonoid 3-O-glucosylt 97.5 0.0071 2.4E-07 68.2 21.3 145 547-724 273-427 (454)
60 3hbm_A UDP-sugar hydrolase; PS 97.1 0.015 5.2E-07 61.3 18.4 94 548-671 158-251 (282)
61 1psw_A ADP-heptose LPS heptosy 94.3 0.13 4.3E-06 54.9 9.6 100 548-670 181-286 (348)
62 3tov_A Glycosyl transferase fa 91.5 0.69 2.4E-05 49.8 10.3 102 545-670 182-286 (349)
63 2gt1_A Lipopolysaccharide hept 88.0 1.6 5.5E-05 45.9 9.6 98 548-670 179-278 (326)
64 3l7i_A Teichoic acid biosynthe 83.1 3.6 0.00012 48.7 10.3 134 537-703 529-680 (729)
65 2jzc_A UDP-N-acetylglucosamine 80.7 2.5 8.6E-05 42.7 6.6 63 632-702 124-195 (224)
66 2dvz_A BUGE, putative exported 72.2 51 0.0018 34.6 14.3 149 549-722 116-281 (314)
67 2f5x_A BUGD; periplasmic bindi 71.0 54 0.0018 34.4 14.1 149 549-722 112-277 (312)
68 2qpq_A Protein BUG27; alpha/be 64.9 37 0.0013 35.4 11.3 149 549-722 103-268 (301)
69 3heb_A Response regulator rece 63.7 72 0.0025 28.3 11.8 108 580-703 5-132 (152)
70 1k68_A Phytochrome response re 62.8 74 0.0025 27.3 12.3 109 580-704 3-129 (140)
71 3kht_A Response regulator; PSI 61.1 62 0.0021 28.4 10.7 111 579-705 5-127 (144)
72 1k66_A Phytochrome response re 59.2 90 0.0031 27.1 11.7 111 579-705 6-137 (149)
73 4b4o_A Epimerase family protei 52.8 6.6 0.00022 40.4 2.8 33 255-316 1-33 (298)
74 3ius_A Uncharacterized conserv 51.6 5.7 0.0002 40.4 2.0 35 252-316 3-37 (286)
75 2pln_A HP1043, response regula 51.2 91 0.0031 27.0 10.0 106 578-704 17-131 (137)
76 2zay_A Response regulator rece 50.1 95 0.0032 27.2 10.0 109 579-705 8-127 (147)
77 2qvg_A Two component response 49.6 1.1E+02 0.0039 26.4 10.4 107 579-701 7-130 (143)
78 1xv5_A AGT, DNA alpha-glucosyl 49.4 2.1E+02 0.007 28.4 30.2 165 550-736 199-393 (401)
79 3gt7_A Sensor protein; structu 45.0 1.4E+02 0.0049 26.5 10.5 111 579-707 7-128 (154)
80 3grc_A Sensor protein, kinase; 42.7 1.6E+02 0.0056 25.3 12.5 109 579-705 6-126 (140)
81 3cg4_A Response regulator rece 41.5 1.7E+02 0.0058 25.2 12.5 108 579-704 7-125 (142)
82 4e7p_A Response regulator; DNA 41.2 1.5E+02 0.005 26.2 9.8 75 630-704 55-138 (150)
83 2vzf_A NADH-dependent FMN redu 40.8 20 0.00068 34.7 4.0 37 253-307 1-38 (197)
84 2phj_A 5'-nucleotidase SURE; S 40.5 2E+02 0.0068 29.2 11.5 38 254-318 1-38 (251)
85 3eul_A Possible nitrate/nitrit 40.2 1.9E+02 0.0064 25.4 10.4 112 578-705 14-134 (152)
86 1i3c_A Response regulator RCP1 37.9 2.1E+02 0.0071 25.1 12.1 110 579-704 8-135 (149)
87 3ilh_A Two component response 37.8 2E+02 0.0067 24.8 10.5 111 578-704 8-137 (146)
88 3h5i_A Response regulator/sens 37.7 2E+02 0.0068 24.9 14.1 107 580-704 6-122 (140)
89 3h1g_A Chemotaxis protein CHEY 37.5 1.9E+02 0.0065 24.6 11.4 108 580-704 6-125 (129)
90 4fle_A Esterase; structural ge 37.0 2.5E+02 0.0086 25.8 11.3 32 381-413 60-91 (202)
91 1uan_A Hypothetical protein TT 36.6 1.3E+02 0.0044 29.8 9.3 41 254-317 1-41 (227)
92 4dad_A Putative pilus assembly 35.8 1.3E+02 0.0043 26.3 8.4 66 640-705 67-140 (146)
93 3lkv_A Uncharacterized conserv 35.0 3.4E+02 0.012 27.4 12.7 114 563-691 126-244 (302)
94 4gi5_A Quinone reductase; prot 34.2 33 0.0011 35.6 4.6 36 254-307 22-57 (280)
95 1jwq_A N-acetylmuramoyl-L-alan 33.7 36 0.0012 32.8 4.5 26 286-316 28-54 (179)
96 1d4a_A DT-diaphorase, quinone 33.3 42 0.0014 34.4 5.1 37 253-307 1-37 (273)
97 3p0r_A Azoreductase; structura 32.7 31 0.001 33.9 3.8 37 253-307 3-43 (211)
98 3m2p_A UDP-N-acetylglucosamine 32.5 21 0.00072 36.7 2.8 35 253-316 1-35 (311)
99 1j9j_A Stationary phase surviV 32.3 3.4E+02 0.012 27.4 11.7 35 380-414 83-128 (247)
100 4egb_A DTDP-glucose 4,6-dehydr 31.6 1.8E+02 0.0061 29.9 9.9 14 294-307 39-52 (346)
101 2qr3_A Two-component system re 31.6 2.4E+02 0.0083 24.0 9.8 107 580-704 4-124 (140)
102 3n53_A Response regulator rece 31.5 2.5E+02 0.0085 24.1 11.4 75 630-704 35-120 (140)
103 3hzh_A Chemotaxis response reg 31.3 2.8E+02 0.0094 24.6 10.2 74 630-703 70-154 (157)
104 3l4b_C TRKA K+ channel protien 31.3 1E+02 0.0034 29.9 7.4 29 382-410 64-95 (218)
105 2j48_A Two-component sensor ki 30.9 2.1E+02 0.0073 23.1 9.3 103 581-701 3-113 (119)
106 1psw_A ADP-heptose LPS heptosy 30.3 81 0.0028 32.6 7.0 28 381-411 78-106 (348)
107 3jte_A Response regulator rece 30.3 2.6E+02 0.009 24.0 11.8 107 580-704 4-121 (143)
108 3to5_A CHEY homolog; alpha(5)b 28.6 49 0.0017 30.1 4.2 109 579-704 12-131 (134)
109 2fzv_A Putative arsenical resi 28.4 48 0.0017 34.4 4.6 52 234-307 42-93 (279)
110 2qsj_A DNA-binding response re 27.5 3.1E+02 0.01 23.9 9.6 109 579-704 3-122 (154)
111 3lua_A Response regulator rece 27.4 1.7E+02 0.0058 25.2 7.7 107 580-704 5-125 (140)
112 3ew7_A LMO0794 protein; Q8Y8U8 26.9 31 0.0011 33.0 2.7 19 294-316 15-33 (221)
113 2qzj_A Two-component response 26.1 3.1E+02 0.011 23.5 10.6 108 579-704 4-119 (136)
114 3hdv_A Response regulator; PSI 26.0 3E+02 0.01 23.3 11.3 108 579-704 7-125 (136)
115 2qxy_A Response regulator; reg 25.5 2.6E+02 0.0089 24.0 8.6 108 579-704 4-119 (142)
116 1qkk_A DCTD, C4-dicarboxylate 25.4 3.4E+02 0.012 23.7 10.5 107 580-704 4-119 (155)
117 2cp8_A NEXT to BRCA1 gene 1 pr 25.4 70 0.0024 24.8 3.8 20 195-214 2-21 (54)
118 3lte_A Response regulator; str 25.4 3E+02 0.01 23.1 10.8 108 579-704 6-123 (132)
119 3h2s_A Putative NADH-flavin re 25.3 35 0.0012 32.9 2.7 19 294-316 15-33 (224)
120 1rcu_A Conserved hypothetical 25.2 36 0.0012 33.4 2.7 67 632-701 110-190 (195)
121 3ikm_A DNA polymerase subunit 25.1 43 0.0015 41.0 3.9 79 134-220 6-108 (1172)
122 3dhn_A NAD-dependent epimerase 25.1 28 0.00096 33.7 2.0 19 294-316 19-37 (227)
123 3hdg_A Uncharacterized protein 24.9 3.2E+02 0.011 23.2 9.8 108 579-704 7-123 (137)
124 3t6k_A Response regulator rece 24.6 3.3E+02 0.011 23.3 11.4 107 580-704 5-122 (136)
125 4had_A Probable oxidoreductase 24.6 1.8E+02 0.006 30.3 8.3 69 578-670 47-116 (350)
126 2x4g_A Nucleoside-diphosphate- 24.5 41 0.0014 34.8 3.2 20 294-317 28-47 (342)
127 3lcr_A Tautomycetin biosynthet 24.2 3.9E+02 0.013 27.2 10.9 39 366-405 131-169 (319)
128 2q62_A ARSH; alpha/beta, flavo 24.1 79 0.0027 32.0 5.2 44 246-307 25-69 (247)
129 3ph3_A Ribose-5-phosphate isom 23.6 41 0.0014 32.2 2.7 36 249-307 15-50 (169)
130 1jbe_A Chemotaxis protein CHEY 23.4 3.2E+02 0.011 22.7 11.1 109 579-704 4-123 (128)
131 3kcn_A Adenylate cyclase homol 23.2 3.7E+02 0.013 23.3 13.8 106 580-704 5-121 (151)
132 2r6j_A Eugenol synthase 1; phe 23.0 52 0.0018 33.7 3.7 20 294-317 26-45 (318)
133 3c24_A Putative oxidoreductase 22.9 41 0.0014 34.4 2.8 19 294-316 26-44 (286)
134 1ydw_A AX110P-like protein; st 22.3 2E+02 0.0067 30.2 8.2 82 565-671 20-102 (362)
135 3cg0_A Response regulator rece 22.0 3.6E+02 0.012 22.8 10.8 109 578-704 8-126 (140)
136 2rjn_A Response regulator rece 22.0 3.9E+02 0.013 23.2 10.4 108 579-704 7-124 (154)
137 3uqz_A DNA processing protein 21.7 1.8E+02 0.0063 30.2 7.4 124 560-698 143-278 (288)
138 3i42_A Response regulator rece 21.6 3.5E+02 0.012 22.5 10.8 106 580-703 4-119 (127)
139 3cnb_A DNA-binding response re 21.6 3.7E+02 0.013 22.7 11.4 109 579-704 8-128 (143)
140 3ors_A N5-carboxyaminoimidazol 21.4 5.1E+02 0.018 24.5 9.8 111 600-719 17-146 (163)
141 2rdm_A Response regulator rece 21.2 3.6E+02 0.012 22.5 11.8 106 579-704 5-121 (132)
142 4h3v_A Oxidoreductase domain p 21.2 1.2E+02 0.0042 31.8 6.3 82 566-671 21-106 (390)
143 3vps_A TUNA, NAD-dependent epi 21.1 49 0.0017 33.7 2.9 20 294-317 22-41 (321)
144 2l2q_A PTS system, cellobiose- 21.1 1.2E+02 0.004 26.4 5.1 35 252-307 2-36 (109)
145 1p6q_A CHEY2; chemotaxis, sign 21.1 3.6E+02 0.012 22.4 8.6 108 580-704 7-125 (129)
146 4fb5_A Probable oxidoreductase 20.6 1.7E+02 0.0057 30.7 7.2 71 576-670 53-124 (393)
147 2nx2_A Hypothetical protein YP 20.3 3E+02 0.01 26.3 8.3 122 549-681 45-178 (181)
148 3bfv_A CAPA1, CAPB2, membrane 20.3 1E+02 0.0036 31.3 5.3 34 163-198 6-39 (271)
149 3eod_A Protein HNR; response r 20.2 3.8E+02 0.013 22.4 9.8 108 579-704 7-124 (130)
150 3c1o_A Eugenol synthase; pheny 20.1 60 0.0021 33.2 3.4 20 294-317 19-38 (321)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=1.6e-176 Score=1576.98 Aligned_cols=783 Identities=77% Similarity=1.251 Sum_probs=744.8
Q ss_pred ChhhHHHHHHHH----HHHHHHHHhcCCCccchhhHHHHHHhc-cC------CCcHHHHHhhcceeeecCCcEEEEEecC
Q 003947 1 MAQQFIETLSKS----LTLLSSIERLGCGIYKRQQILSLVDAE-SN------GAAIADVLNATQEAAVSSPWVALALRTS 69 (784)
Q Consensus 1 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (784)
|+|+|+++|++| ++||++|+++||++|++|||+++|+++ +. +|+||++|++||||||.|||||||||||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 93 (816)
T 3s28_A 14 QRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPEQTRKKLEGGPFFDLLKSTQEAIVLPPWVALAVRPR 93 (816)
T ss_dssp -------------CTTHHHHHHHHHHHTCSEEEEHHHHHHTTTTTSCGGGCCCSTHHHHHHTEEEEEECSSEEEEEEEEE
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhhcccccCcHHHHHHhhhheeecCCeEEEEEcCC
Confidence 689999999999 999999999999999999999999999 32 8999999999999999999999999999
Q ss_pred CceEEEEEEeeCcceeeecChhhhhhhhcccccCCCCCCCCceeeeCccCcC-CCCCCCCCCCCchhhhhhhhhhhcccC
Q 003947 70 PGVWCYIRVNVQTVDVEEISVSKYLLFKEEIVDGRKSNGNFAFEVDFEPFRA-LPHPTLSNSIGHGMEFLNRHMSAKLFN 148 (784)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (784)
||+|||||||++||+||+|||+|||+|||+|||++ ++++++||+||+|||+ ||+|++|+||||||+|||||||||||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (816)
T 3s28_A 94 PGVWEYLRVNLHALVVEELQPAEFLHFKEELVDGV-KNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFH 172 (816)
T ss_dssp TTEEEEEEEETTSSCEEEECHHHHHHHHHHHHHSS-CCCTTSCEEECGGGGTTSCCCCCGGGTTBHHHHHHHHHHHHTTT
T ss_pred CcceEEEEEEhhhCceeeecHHHHHHhHHHhcCCC-CCCCCceEEeccccccCCCCCCCcccccCcHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999 8999999999999999 999999999999999999999999999
Q ss_pred CccchHHHHHHHHhccCCCceeeccccCCCHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhcCcccccCCchHHHHHH
Q 003947 149 DKESMQSLLEFLRVHSHMGKNMMLNEKIQDLGTLQSSLRMAEKYLSMLAPDTSYAEFEQKFQEIGLERGWGDNAEHVLGM 228 (784)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 228 (784)
|++++++||+||+.|+|+|++|||||||+|+++|++||++|++||+++|+||||++|+++||+|||||||||||+||+||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (816)
T 3s28_A 173 DKESLLPLLKFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWGDNAERVLDM 252 (816)
T ss_dssp CHHHHHHHHHHHHHCEETTEEBSBCTTCCSHHHHHHHHHHHHHHHHHSCTTCBHHHHHHHHHHTTBCBCSCSBHHHHHHH
T ss_pred ChhhhHHHHHHHHHcccCCeeeeccCCcCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcchHhHHhcCCCcceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCccc
Q 003947 229 IQLLLDLLQAPESSTLETFLGKIPRVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITP 308 (784)
Q Consensus 229 ~~~~~~~~~~p~~~~~~~~~~~~p~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~ 308 (784)
|++|+++|++|||++||+|++|+||+|||+|||+||+|+|.+++|+||||||++||+|||||||++|+++|+++||+|+|
T Consensus 253 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~ 332 (816)
T 3s28_A 253 IRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKP 332 (816)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHSCCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHhcCCCcccHHHHhccCCceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCCCCcCcceeeecCcCCeEEEEccCCCCcccccccccccCChhhHHHHHHHHHHHHHHHcCCCceEEE
Q 003947 309 RILIITRLLPDAVGTTCGQRVEKVYGTKYSDILRVPFRTEEGIVRKWISRFEVWPYLETFTEDVATEIIQELQCKPDLII 388 (784)
Q Consensus 309 ~i~VvTr~~~~~~g~~~~~~~e~v~~~~~v~IlrvP~~~~~~~~~~~isr~~l~~yl~~f~~~~~~~i~~~~~~~pDIIh 388 (784)
+|+|+|+.+++..|+.|.++.+.+.+++|++|+|+|+++.+|++++|++++.+|+|+..|...+...+.....++|||||
T Consensus 333 ~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIH 412 (816)
T 3s28_A 333 RILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLII 412 (816)
T ss_dssp EEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEE
T ss_pred eeEEEeCCCCCCCCCccCCcceeecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 99999999999999999999999999999999999999988889999999999999999998888888877677999999
Q ss_pred EcCCChhHHHHHHHHhCCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHhHhhcccc
Q 003947 389 GNYSDGNIVASLLAHKLDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDT 468 (784)
Q Consensus 389 ~~~~~~~lva~llar~~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~ 468 (784)
+|++.+++++.++++.+|+|+|+|+|++...++..++..|..+...|++++++.+|+.+++.||.|||+|+++++.+.+.
T Consensus 413 sH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~ 492 (816)
T 3s28_A 413 GNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKET 492 (816)
T ss_dssp EEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSS
T ss_pred eCCchHHHHHHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHH
Confidence 99999999999999999999999999999888888888898889999999999999999999999999999999999999
Q ss_pred ccccccccccccccceeeecCCCCCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhccccCCCC
Q 003947 469 VGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSK 548 (784)
Q Consensus 469 vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k 548 (784)
+++|.++.+|++|++|++++|++++++|+.|||||+|.+.|.|......++...++.++..++++.+.++.+|++.++++
T Consensus 493 ~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~ 572 (816)
T 3s28_A 493 VGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKK 572 (816)
T ss_dssp CCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTS
T ss_pred HHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCC
Confidence 99999999999999999999999999999999999999999998877777888889999999999999999999888899
Q ss_pred CEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcC
Q 003947 549 PILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRV 628 (784)
Q Consensus 549 ~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v 628 (784)
++|+++||+++.||++.+++|++++.+.+++++|+|+|+|++..+.+.++.++.+.++++++++++.++|+|+|++++.+
T Consensus 573 ~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v 652 (816)
T 3s28_A 573 PILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRV 652 (816)
T ss_dssp CEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHH
T ss_pred eEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccC
Confidence 99999999999999999999999998877899999999998656678888889999999999999999999999888888
Q ss_pred ChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhc
Q 003947 629 RNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCK 708 (784)
Q Consensus 629 ~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~ll 708 (784)
+.+++++++++++|+||+||.+|+||++++||||||+|||+|+.||+.|++.++.+|++++|+|++++|++|.+++++++
T Consensus 653 ~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll 732 (816)
T 3s28_A 653 RNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCK 732 (816)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHHHHHHHHHHHhc
Confidence 88999999997689999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhhHHHHhhHHHHHHHhhccccccccCcccCC
Q 003947 709 VDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGVYGFWKHLSKLDCREKNRYLEMFYSLMYRKQVQTVPLAVDE 784 (784)
Q Consensus 709 ~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 784 (784)
.||+.+++|+++|++++.++|||+.++++++++|+.||||+++++++|++++||+||||+|+|||||++||+++||
T Consensus 733 ~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g~wk~vs~~~r~~~~ryle~~~~l~~~~~~~~~~~~~~~ 808 (816)
T 3s28_A 733 EDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFYALKYRPLAQAVPLAQDD 808 (816)
T ss_dssp HCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHTHHHHHHHSCCCCC-
T ss_pred cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHhhhcchhhhHHHHHHHHHHHHHhhhhHHhcCCCccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=9.2e-46 Score=423.28 Aligned_cols=434 Identities=27% Similarity=0.453 Sum_probs=314.5
Q ss_pred CCcceEEEEEccCccccccC--ccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCCcCcc
Q 003947 251 IPRVFNVVIFTPHGYFAQDN--VLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTTCGQR 328 (784)
Q Consensus 251 ~p~~mkI~ivs~h~~~~~~~--~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~~~~~ 328 (784)
+.+.|||++++++++|.+.. +.+.|..||.+.++. +|++.|+++||+|+ |+|..........+...
T Consensus 4 m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~ 71 (499)
T 2r60_A 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVK--------EVSLALAEMGVQVD----IITRRIKDENWPEFSGE 71 (499)
T ss_dssp ---CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCCBTTBGGGCCS
T ss_pred ccccceEEEEecCCCccccccccCCCCCCCCeeehHH--------HHHHHHHhcCCeEE----EEeCCCCcccccchhhh
Confidence 34568999999998865322 245678899999999 56666799999999 88865332110112222
Q ss_pred eeeecCcCCeEEEEccCCCCcccccccccccCChhhHHHHHHHHHHHHHHHcCCCceEEEEcCCChhHHHHHHHHhCCCc
Q 003947 329 VEKVYGTKYSDILRVPFRTEEGIVRKWISRFEVWPYLETFTEDVATEIIQELQCKPDLIIGNYSDGNIVASLLAHKLDVT 408 (784)
Q Consensus 329 ~e~v~~~~~v~IlrvP~~~~~~~~~~~isr~~l~~yl~~f~~~~~~~i~~~~~~~pDIIh~~~~~~~lva~llar~~gvp 408 (784)
.+......+++++++|..... +..+..+|.++..+...+.+.+.+. ..+|||||+|++..++++.++++..++|
T Consensus 72 ~~~~~~~~gv~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~Divh~~~~~~~~~~~~~~~~~~~p 145 (499)
T 2r60_A 72 IDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKIINFYREE-GKFPQVVTTHYGDGGLAGVLLKNIKGLP 145 (499)
T ss_dssp EEECTTCSSEEEEEECCSCSS-----CCCGGGCGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHCCC
T ss_pred HHhccCCCCeEEEEecCCCcC-----CcCHHHHHHHHHHHHHHHHHHHHhc-CCCCCEEEEcCCcchHHHHHHHHhcCCc
Confidence 333322357999999875432 1233456666665555555544432 3589999999877777888888889999
Q ss_pred EEEEecCCcccCCC---CCcchhhhccccccccchhhhhHHHhcccCEEEecChHhHhhcccccccccccccccccccee
Q 003947 409 QCTIAHALELTKYP---DSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYR 485 (784)
Q Consensus 409 ~V~t~H~l~~~k~~---~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~ 485 (784)
+|.+.|+....... ........+...+++......++..++.||.||++|...++...+..
T Consensus 146 ~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~---------------- 209 (499)
T 2r60_A 146 FTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHD---------------- 209 (499)
T ss_dssp EEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSG----------------
T ss_pred EEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhh----------------
Confidence 99999997432110 00000011111222222333466789999999999988776322210
Q ss_pred eecC-C-CC-CCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhc-----cccCCCCCEEEEEecc
Q 003947 486 VVNG-I-DA-FDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLC-----VLKDSSKPILFTMARL 557 (784)
Q Consensus 486 ~~~g-i-~~-f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~g-----ll~~~~k~iIl~vGRL 557 (784)
..| + +. ...++.|||||+|.+.|.+......+ ...++++| + ++++++|+++||+
T Consensus 210 -~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~---------------~~~r~~~~~~~~~~--~~~~~~i~~vGrl 271 (499)
T 2r60_A 210 -LYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIK---------------AKITKYLERDLGSE--RMELPAIIASSRL 271 (499)
T ss_dssp -GGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHH---------------HHHHHHHHHHSCGG--GTTSCEEEECSCC
T ss_pred -cccccccccCCCCeEEECCCcChhhcCccchhhhH---------------HHHHHHhccccccc--CCCCcEEEEeecC
Confidence 012 2 00 15689999999999988876432111 01234455 4 5678899999999
Q ss_pred cCCCChHHHHHHHHHhHccCCC-eEEEEEeCCCCC----CcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhH
Q 003947 558 DRVKNLTGLVEWYGKNAKLREL-VNLVVVGGDRRK----ESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGE 632 (784)
Q Consensus 558 ~~~Kgi~~LieA~~~l~~~~~~-v~LvIVG~g~~~----~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~e 632 (784)
.+.||++.+++|+.++.+..++ +.|+|+|+++.. ...+.++.++.+.++++++++++.++|.|+| .++.++
T Consensus 272 ~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G----~v~~~~ 347 (499)
T 2r60_A 272 DQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFP----LNSQQE 347 (499)
T ss_dssp CGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEE----CCSHHH
T ss_pred ccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECC----CCCHHH
Confidence 9999999999999998765444 589999983220 0001234445678999999999999999999 777889
Q ss_pred HHHHHHccc----cEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhc
Q 003947 633 LYRYICDTK----GAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCK 708 (784)
Q Consensus 633 l~~~la~aa----dvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~ll 708 (784)
+..+|+. + |++|+||.+|+||++++||||||+|||+|+.||..|++.++.+|++++|+|+++++++|.+ ++
T Consensus 348 ~~~~~~~-a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~----ll 422 (499)
T 2r60_A 348 LAGCYAY-LASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLK----AF 422 (499)
T ss_dssp HHHHHHH-HHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHH----HH
T ss_pred HHHHHHh-cCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHH----HH
Confidence 9999995 9 9999999999999999999999999999999999999999999999999999999999974 45
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 003947 709 VDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGVY 745 (784)
Q Consensus 709 ~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~~ 745 (784)
+|++.+++|+++|++++.++|||+.++++++++|+..
T Consensus 423 ~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~ 459 (499)
T 2r60_A 423 ESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEI 459 (499)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7999999999999999988899999999999999853
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=2e-43 Score=393.20 Aligned_cols=401 Identities=14% Similarity=0.152 Sum_probs=297.5
Q ss_pred ceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCC------cC-
Q 003947 254 VFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTT------CG- 326 (784)
Q Consensus 254 ~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~------~~- 326 (784)
.|||++++++.++ +..||.+.++. +|++.|+++||+|+ |+|...+...... ++
T Consensus 2 ~MkIl~v~~~~~p--------~~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~~~ 61 (439)
T 3fro_A 2 HMKVLLLGFEFLP--------VKVGGLAEALT--------AISEALASLGHEVL----VFTPSHGRFQGEEIGKIRVFGE 61 (439)
T ss_dssp CCEEEEECSCCTT--------SCSSSHHHHHH--------HHHHHHHHTTCEEE----EEEECTTCSCCEEEEEEEETTE
T ss_pred ceEEEEEecccCC--------cccCCHHHHHH--------HHHHHHHHCCCeEE----EEecCCCCchhhhhccccccCc
Confidence 4899999988763 36799999999 56666799999999 9997654432110 00
Q ss_pred -cceee-ecCcCCeEEEEccCCCCcccccccccccCChh-hHH-------HHHHHHHHHHHHHc--CCCceEEEEcCCCh
Q 003947 327 -QRVEK-VYGTKYSDILRVPFRTEEGIVRKWISRFEVWP-YLE-------TFTEDVATEIIQEL--QCKPDLIIGNYSDG 394 (784)
Q Consensus 327 -~~~e~-v~~~~~v~IlrvP~~~~~~~~~~~isr~~l~~-yl~-------~f~~~~~~~i~~~~--~~~pDIIh~~~~~~ 394 (784)
..... .....|++++++|. .. ..+..++. +.. .|...+.+.+...+ ..+|||||+|++..
T Consensus 62 ~~~~~~~~~~~~gv~v~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~ 133 (439)
T 3fro_A 62 EVQVKVSYEERGNLRIYRIGG-GL-------LDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHT 133 (439)
T ss_dssp EEEEEEEEEEETTEEEEEEES-GG-------GGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGG
T ss_pred ccceeeeeccCCCceEEEecc-hh-------ccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhh
Confidence 00000 01235788888876 21 12233333 222 23333333333331 56999999999888
Q ss_pred hHHHHHHHHhCCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHhHhhcccccccccc
Q 003947 395 NIVASLLAHKLDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYES 474 (784)
Q Consensus 395 ~lva~llar~~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~vgqYe~ 474 (784)
++++.++++..++|+|++.|+.....++........+.. .........++..++.||.|+++|....+. ..+.|
T Consensus 134 ~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~---~~~~~-- 207 (439)
T 3fro_A 134 VFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSE-LAPYPDIDPEHTGGYIADIVTTVSRGYLID---EWGFF-- 207 (439)
T ss_dssp HHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGG-GCCSSEECHHHHHHHHCSEEEESCHHHHHH---THHHH--
T ss_pred hhhHHHHhhccCCCEEEEecccccccCchHHhCcccccc-ccccceeeHhhhhhhhccEEEecCHHHHHH---Hhhhh--
Confidence 888888989999999999999864332111000001100 001112234667899999999999887662 11100
Q ss_pred ccccccccceeeecCCCCCCCceEEecCCCCCCCCCCCc----HHHHhhhcchhhhHHhhcCchhhhhhhccccCCCCCE
Q 003947 475 HTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIYFPYM----EEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPI 550 (784)
Q Consensus 475 ~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f~p~~----~~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k~i 550 (784)
++. ..++.+||||+|.+.|.|.. ....+ ...++++|+ +++ ++
T Consensus 208 --------------~~~--~~~i~vi~ngvd~~~~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~-~~ 253 (439)
T 3fro_A 208 --------------RNF--EGKITYVFNGIDCSFWNESYLTGSRDERK---------------KSLLSKFGM--DEG-VT 253 (439)
T ss_dssp --------------GGG--TTSEEECCCCCCTTTSCGGGSCSCHHHHH---------------HHHHHHHTC--CSC-EE
T ss_pred --------------hhc--CCceeecCCCCCchhcCcccccchhhhhH---------------HHHHHHcCC--CCC-cE
Confidence 122 77999999999999998762 11111 134456776 455 99
Q ss_pred EEEEeccc-CCCChHHHHHHHHHhHccC--CCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCc
Q 003947 551 LFTMARLD-RVKNLTGLVEWYGKNAKLR--ELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNR 627 (784)
Q Consensus 551 Il~vGRL~-~~Kgi~~LieA~~~l~~~~--~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~ 627 (784)
|+++||+. +.||++.+++|++++.+.. ++++|+|+|+|+. .+.+.+++++++++ +.+.|.| .
T Consensus 254 i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~---------~~~~~l~~~~~~~~--~~~~~~g----~ 318 (439)
T 3fro_A 254 FMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP---------ELEGWARSLEEKHG--NVKVITE----M 318 (439)
T ss_dssp EEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH---------HHHHHHHHHHHHCT--TEEEECS----C
T ss_pred EEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCCh---------hHHHHHHHHHhhcC--CEEEEcC----C
Confidence 99999999 9999999999999998866 8999999999853 34477888899988 7788888 7
Q ss_pred CChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHh
Q 003947 628 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKC 707 (784)
Q Consensus 628 v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~l 707 (784)
++.+++..+++. +|++|+||.+|+||++++||||||+|||+|+.||..|++.++ +|++++|+|+++++++|.+++
T Consensus 319 ~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll--- 393 (439)
T 3fro_A 319 LSREFVRELYGS-VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKAL--- 393 (439)
T ss_dssp CCHHHHHHHHTT-CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHH-CCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHH---
Confidence 788999999995 999999999999999999999999999999999999999888 999999999999999998654
Q ss_pred cC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003947 708 KV-DPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 708 l~-dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~ 744 (784)
+ ||+.+++|++++++++ ++|||+.++++++++|+.
T Consensus 394 -~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~ 429 (439)
T 3fro_A 394 -ELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTG 429 (439)
T ss_dssp -HHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred -hcCHHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHH
Confidence 5 8999999999999999 889999999999999975
No 4
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=2e-43 Score=395.40 Aligned_cols=404 Identities=20% Similarity=0.277 Sum_probs=294.9
Q ss_pred cceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCCcCcceeee
Q 003947 253 RVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTTCGQRVEKV 332 (784)
Q Consensus 253 ~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~~~~~~e~v 332 (784)
.+|||++++.+++|. ..+|.+..||.+.++. +|++.|+++||+|+ |+|....... ......
T Consensus 19 ~mmkIl~i~~~~~p~--~~~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~-----~~~~~~ 79 (438)
T 3c48_A 19 SHMRVAMISMHTSPL--QQPGTGDSGGMNVYIL--------STATELAKQGIEVD----IYTRATRPSQ-----GEIVRV 79 (438)
T ss_dssp CCCEEEEECTTSCTT--CC-------CHHHHHH--------HHHHHHHHTTCEEE----EEEECCCGGG-----CSEEEE
T ss_pred chheeeeEEeecccc--ccCCCCCCCCHHHHHH--------HHHHHHHhcCCEEE----EEecCCCCCC-----cccccc
Confidence 358999999887743 2345557899999999 56666799999999 8886532110 111111
Q ss_pred cCcCCeEEEEccCCCCcccccccccccCChhhHHHHHHHHHHHHHHHcCCCceEEEEcCCChhHHHHHHHHhCCCcEEEE
Q 003947 333 YGTKYSDILRVPFRTEEGIVRKWISRFEVWPYLETFTEDVATEIIQELQCKPDLIIGNYSDGNIVASLLAHKLDVTQCTI 412 (784)
Q Consensus 333 ~~~~~v~IlrvP~~~~~~~~~~~isr~~l~~yl~~f~~~~~~~i~~~~~~~pDIIh~~~~~~~lva~llar~~gvp~V~t 412 (784)
.++++++++|.....+ .++..++.++..|...+.+...+. ..+|||||+|++..++++.++++..++|+|.+
T Consensus 80 --~~~v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~ 151 (438)
T 3c48_A 80 --AENLRVINIAAGPYEG-----LSKEELPTQLAAFTGGMLSFTRRE-KVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHT 151 (438)
T ss_dssp --ETTEEEEEECCSCSSS-----CCGGGGGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEE
T ss_pred --cCCeEEEEecCCCccc-----cchhHHHHHHHHHHHHHHHHHHhc-cCCCCEEEeCCccHHHHHHHHHHHcCCCEEEE
Confidence 2468899888654322 222344555555555544442322 22499999998777777888888889999999
Q ss_pred ecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHhHhhccccccccccccccccccceeeecCCCC
Q 003947 413 AHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGIDA 492 (784)
Q Consensus 413 ~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~ 492 (784)
.|+......... .... ..........++..++.+|.||++|....+...+. .|++
T Consensus 152 ~h~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~g~~- 206 (438)
T 3c48_A 152 AHTLAAVKNSYR----DDSD-TPESEARRICEQQLVDNADVLAVNTQEEMQDLMHH-------------------YDAD- 206 (438)
T ss_dssp CSSCHHHHSCC--------C-CHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHH-------------------HCCC-
T ss_pred ecCCcccccccc----cccC-CcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHHH-------------------hCCC-
Confidence 999753221100 0000 00001112245667899999999998877632221 2333
Q ss_pred CCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhccccCCCCCEEEEEecccCCCChHHHHHHHHH
Q 003947 493 FDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPILFTMARLDRVKNLTGLVEWYGK 572 (784)
Q Consensus 493 f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~ 572 (784)
..++.+||||+|.+.|.+...... ...++.+|+ ++++++|+++||+.+.||++.+++|+..
T Consensus 207 -~~k~~vi~ngvd~~~~~~~~~~~~----------------~~~r~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~ 267 (438)
T 3c48_A 207 -PDRISVVSPGADVELYSPGNDRAT----------------ERSRRELGI--PLHTKVVAFVGRLQPFKGPQVLIKAVAA 267 (438)
T ss_dssp -GGGEEECCCCCCTTTSCCC----C----------------HHHHHHTTC--CSSSEEEEEESCBSGGGCHHHHHHHHHH
T ss_pred -hhheEEecCCccccccCCcccchh----------------hhhHHhcCC--CCCCcEEEEEeeecccCCHHHHHHHHHH
Confidence 668999999999998877543210 012345666 5678899999999999999999999999
Q ss_pred hHccCC--CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHccccEEEeCCCC
Q 003947 573 NAKLRE--LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALY 650 (784)
Q Consensus 573 l~~~~~--~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~ 650 (784)
+.+..| +++|+|+|+.... . .+.+.++++++++++.++|.|+| .++.+++..+++. +|++|+||.+
T Consensus 268 l~~~~p~~~~~l~i~G~~~~~----g---~~~~~l~~~~~~~~l~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~~ 335 (438)
T 3c48_A 268 LFDRDPDRNLRVIICGGPSGP----N---ATPDTYRHMAEELGVEKRIRFLD----PRPPSELVAVYRA-ADIVAVPSFN 335 (438)
T ss_dssp HHHHCTTCSEEEEEECCBC-------------CHHHHHHHHTTCTTTEEEEC----CCCHHHHHHHHHH-CSEEEECCSC
T ss_pred HHhhCCCcceEEEEEeCCCCC----C---cHHHHHHHHHHHcCCCCcEEEcC----CCChHHHHHHHHh-CCEEEECccc
Confidence 988766 8999999982110 0 22467888999999999999999 6778899999995 9999999999
Q ss_pred CCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC
Q 003947 651 EAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYT 730 (784)
Q Consensus 651 E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~yt 730 (784)
|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++ +|++.+++|++++++++.+ |+
T Consensus 336 e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~-~s 410 (438)
T 3c48_A 336 ESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLL----DDDETRIRMGEDAVEHART-FS 410 (438)
T ss_dssp CSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHH-HH
T ss_pred cCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHh-CC
Confidence 999999999999999999999999999999999999999999999999998554 6999999999999999977 99
Q ss_pred HHHHHHHHHHHHHH
Q 003947 731 WKIYSERLLNLSGV 744 (784)
Q Consensus 731 w~~~a~~ll~ly~~ 744 (784)
|+.++++++++|+.
T Consensus 411 ~~~~~~~~~~~~~~ 424 (438)
T 3c48_A 411 WAATAAQLSSLYND 424 (438)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999975
No 5
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=4.3e-42 Score=398.36 Aligned_cols=329 Identities=16% Similarity=0.190 Sum_probs=236.9
Q ss_pred CCceEEEEcCCChhHHHHHHHHhC-------CCcEEEEecCCcccCC-CCCc-----chh---hh--cc---ccccccch
Q 003947 382 CKPDLIIGNYSDGNIVASLLAHKL-------DVTQCTIAHALELTKY-PDSD-----INW---KK--LD---DKYHFSCQ 440 (784)
Q Consensus 382 ~~pDIIh~~~~~~~lva~llar~~-------gvp~V~t~H~l~~~k~-~~s~-----~~~---~~--~~---~~y~~~~~ 440 (784)
..+||+|+|+|.+++++.+++... ++|+|+|+|++..... +... ..+ .. +. ....+...
T Consensus 152 ~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (536)
T 3vue_A 152 GEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRK 231 (536)
T ss_dssp CSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEE
T ss_pred CCCEEEEECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccc
Confidence 457899999999988888877553 6899999999754321 0000 000 00 00 00011112
Q ss_pred hhhhHHHhcccCEEEecChHhHhhccccccccccccccccccceeeecCCCCCCCceEEecCCCCCCCCCCCcHHHHhhh
Q 003947 441 FTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIYFPYMEEKRRLK 520 (784)
Q Consensus 441 ~~~e~~a~~~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~ 520 (784)
....+.++..||.|+|+|+..++.+....+.- ..+. .... ..++.+|+||||.+.|.|.++......
T Consensus 232 ~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g-----~~l~------~~~~--~~~i~~I~NGiD~~~~~p~~d~~~~~~ 298 (536)
T 3vue_A 232 INWMKAGILEADRVLTVSPYYAEELISGIARG-----CELD------NIMR--LTGITGIVNGMDVSEWDPSKDKYITAK 298 (536)
T ss_dssp EEHHHHHHHHCSEEEESCHHHHHHHHTTCCCC-----SSSC------CCSC--CCSCEECCCCCCTTTSCTTTCSSSSCC
T ss_pred hhHHHHHHHhccEEEEcCHHHhhhhhcccccc-----cccc------cccc--cCCeEEEECCcchhhcCCCCccccccc
Confidence 33456788999999999998876443321100 0000 0111 568999999999999998643211000
Q ss_pred cc-hhhhHHhhcCchhhhhhhccccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHH
Q 003947 521 HF-HSEIEELLYSPVENKEHLCVLKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQ 599 (784)
Q Consensus 521 ~~-~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~ 599 (784)
.. ...++....++...++.+|+..+++.|+|+++||+.+.||++.|++|+.++.+ .+.+|+|+|.|..
T Consensus 299 ~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~--~~~~l~l~G~G~~--------- 367 (536)
T 3vue_A 299 YDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ--EDVQIVLLGTGKK--------- 367 (536)
T ss_dssp CCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT--SSCEEEEECCBCH---------
T ss_pred cchhhhhhhhHHHHHHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHh--hCCeEEEEeccCc---------
Confidence 00 00011112233455677888778899999999999999999999999999976 4689999998854
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcccccccc
Q 003947 600 AEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEII 679 (784)
Q Consensus 600 ~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~~EiI 679 (784)
.....++.....+ .+++.+.+ ..+.+++..+++. +|+||+||.+|+||++++|||+||+|||+|+.||++|+|
T Consensus 368 ~~~~~~~~~~~~~--~~~v~~~~----~~~~~~~~~~~~~-aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V 440 (536)
T 3vue_A 368 KFEKLLKSMEEKY--PGKVRAVV----KFNAPLAHLIMAG-ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTV 440 (536)
T ss_dssp HHHHHHHHHHHHS--TTTEEEEC----SCCHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHC
T ss_pred hHHHHHHHHHhhc--CCceEEEE----eccHHHHHHHHHh-hheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchhee
Confidence 2233445555544 46899998 6677888888885 999999999999999999999999999999999999999
Q ss_pred ccCceEE----------EECCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Q 003947 680 VHGKSGF----------HIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGVYG 746 (784)
Q Consensus 680 ~dg~~G~----------li~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~~~ 746 (784)
.||++|+ +++|.|+++++++|.+++ .+.+++. |++|+++|. .++|||++.|++|+++|+..+
T Consensus 441 ~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral-~~~~~~~-~~~~~~~am---~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 441 IEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAI-KVVGTPA-YEEMVRNCM---NQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp CBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHH-HHTTSHH-HHHHHHHHH---HSCCSSHHHHHHHHHHHHTTC
T ss_pred eCCCCccccccCCCceeEECCCCHHHHHHHHHHHH-HhcCcHH-HHHHHHHHH---HhcCCHHHHHHHHHHHHHHhh
Confidence 9999999 677889999999999887 4556664 778887774 468999999999999998764
No 6
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=2.8e-40 Score=362.98 Aligned_cols=368 Identities=18% Similarity=0.272 Sum_probs=280.1
Q ss_pred cceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCCcCcceeee
Q 003947 253 RVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTTCGQRVEKV 332 (784)
Q Consensus 253 ~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~~~~~~e~v 332 (784)
++|||++++++.. |..||.+.++. .|++.| +||+|+ |+|...+.. .....
T Consensus 3 ~~mkIl~v~~~~~---------p~~gG~~~~~~--------~l~~~L--~g~~v~----v~~~~~~~~-------~~~~~ 52 (394)
T 3okp_A 3 ASRKTLVVTNDFP---------PRIGGIQSYLR--------DFIATQ--DPESIV----VFASTQNAE-------EAHAY 52 (394)
T ss_dssp -CCCEEEEESCCT---------TSCSHHHHHHH--------HHHTTS--CGGGEE----EEEECSSHH-------HHHHH
T ss_pred CCceEEEEeCccC---------CccchHHHHHH--------HHHHHh--cCCeEE----EEECCCCcc-------chhhh
Confidence 4589999997755 45799999999 555566 699999 888653221 00112
Q ss_pred cCcCCeEEEEccCCCCcccccccccccCChhhHHHHHHHHHHHHHHHcCCCceEEEEcCCChhHHHHHHHHhCCCc-EEE
Q 003947 333 YGTKYSDILRVPFRTEEGIVRKWISRFEVWPYLETFTEDVATEIIQELQCKPDLIIGNYSDGNIVASLLAHKLDVT-QCT 411 (784)
Q Consensus 333 ~~~~~v~IlrvP~~~~~~~~~~~isr~~l~~yl~~f~~~~~~~i~~~~~~~pDIIh~~~~~~~lva~llar~~gvp-~V~ 411 (784)
....++.++++|..... +.. .+...+.+.+.+ .+||+||+|...+......++++.++| +|.
T Consensus 53 ~~~~~~~~~~~~~~~~~-------------~~~-~~~~~l~~~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~ 115 (394)
T 3okp_A 53 DKTLDYEVIRWPRSVML-------------PTP-TTAHAMAEIIRE---REIDNVWFGAAAPLALMAGTAKQAGASKVIA 115 (394)
T ss_dssp HTTCSSEEEEESSSSCC-------------SCH-HHHHHHHHHHHH---TTCSEEEESSCTTGGGGHHHHHHTTCSEEEE
T ss_pred ccccceEEEEccccccc-------------cch-hhHHHHHHHHHh---cCCCEEEECCcchHHHHHHHHHhcCCCcEEE
Confidence 23346888888864321 111 122233333333 389999999877654445557778887 888
Q ss_pred EecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHhHhhccccccccccccccccccceeeecCCC
Q 003947 412 IAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGID 491 (784)
Q Consensus 412 t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~ 491 (784)
+.|+... .|.. ... .....+..++.+|.|+++|....+...+. .+.
T Consensus 116 ~~h~~~~--------~~~~-~~~-----~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~~~- 161 (394)
T 3okp_A 116 STHGHEV--------GWSM-LPG-----SRQSLRKIGTEVDVLTYISQYTLRRFKSA-------------------FGS- 161 (394)
T ss_dssp ECCSTHH--------HHTT-SHH-----HHHHHHHHHHHCSEEEESCHHHHHHHHHH-------------------HCS-
T ss_pred Eeccchh--------hhhh-cch-----hhHHHHHHHHhCCEEEEcCHHHHHHHHHh-------------------cCC-
Confidence 9997532 1110 000 11123456889999999998877632221 111
Q ss_pred CCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhccccCCCCCEEEEEecccCCCChHHHHHHHH
Q 003947 492 AFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPILFTMARLDRVKNLTGLVEWYG 571 (784)
Q Consensus 492 ~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~ 571 (784)
..++.+||||+|.+.|.|...... ...++.+|+ ++++++|+++||+.+.||++.+++|+.
T Consensus 162 --~~~~~vi~ngv~~~~~~~~~~~~~----------------~~~~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~ 221 (394)
T 3okp_A 162 --HPTFEHLPSGVDVKRFTPATPEDK----------------SATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMP 221 (394)
T ss_dssp --SSEEEECCCCBCTTTSCCCCHHHH----------------HHHHHHTTC--CTTCCEEEEESCSCGGGCHHHHHHHHH
T ss_pred --CCCeEEecCCcCHHHcCCCCchhh----------------HHHHHhcCC--CcCceEEEEEeccccccCHHHHHHHHH
Confidence 569999999999999988433321 123455676 667799999999999999999999999
Q ss_pred HhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHccccEEEeCCCC-
Q 003947 572 KNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALY- 650 (784)
Q Consensus 572 ~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~- 650 (784)
++.+..++++|+|+|+|+. .+.+++++ .++.++|.|+| .++.+++..+++. +|++|+||..
T Consensus 222 ~l~~~~~~~~l~i~G~g~~-----------~~~l~~~~--~~~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~ps~~~ 283 (394)
T 3okp_A 222 QVIAARPDAQLLIVGSGRY-----------ESTLRRLA--TDVSQNVKFLG----RLEYQDMINTLAA-ADIFAMPARTR 283 (394)
T ss_dssp HHHHHSTTCEEEEECCCTT-----------HHHHHHHT--GGGGGGEEEEE----SCCHHHHHHHHHH-CSEEEECCCCB
T ss_pred HHHhhCCCeEEEEEcCchH-----------HHHHHHHH--hcccCeEEEcC----CCCHHHHHHHHHh-CCEEEecCccc
Confidence 9988889999999999864 24555665 56778999999 7778999999995 9999999999
Q ss_pred ------CCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 003947 651 ------EAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKR 724 (784)
Q Consensus 651 ------E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~ 724 (784)
|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+ +++|++.+++|+++++++
T Consensus 284 ~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~----l~~~~~~~~~~~~~~~~~ 358 (394)
T 3okp_A 284 GGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIE----LLDDPIRRAAMGAAGRAH 358 (394)
T ss_dssp GGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHH----HHTCHHHHHHHHHHHHHH
T ss_pred cccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHH----HHhCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999974 457999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHH
Q 003947 725 IQEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 725 v~~~ytw~~~a~~ll~ly~~ 744 (784)
+.++|||+.++++++++|+.
T Consensus 359 ~~~~~s~~~~~~~~~~~~~~ 378 (394)
T 3okp_A 359 VEAEWSWEIMGERLTNILQS 378 (394)
T ss_dssp HHHHTBHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 98999999999999999875
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=4.8e-40 Score=373.99 Aligned_cols=426 Identities=15% Similarity=0.146 Sum_probs=280.8
Q ss_pred eEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCC----------
Q 003947 255 FNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTT---------- 324 (784)
Q Consensus 255 mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~---------- 324 (784)
|||++++.+.+|. +..||.+.++. +|+++|+++||+|+ |+|...+......
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~~~~~~~~~~~~~ 61 (485)
T 2qzs_A 1 MQVLHVCSEMFPL-------LKTGGLADVIG--------ALPAAQIADGVDAR----VLLPAFPDIRRGVTDAQVVSRRD 61 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCHHHHHHCTTCEEEEEEC
T ss_pred CeEEEEeeecccc-------ccCCcHHHHHH--------HHHHHHHHcCCEEE----EEecCccccccccccceeEEEec
Confidence 7999999776531 24699999999 56666799999999 8886532110000
Q ss_pred -cCcceeee-cCcCCeEEEEccCCC---Ccc-ccc-----ccccccCChhhHHHHHHHHHHHHHHHcC--CCceEEEEcC
Q 003947 325 -CGQRVEKV-YGTKYSDILRVPFRT---EEG-IVR-----KWISRFEVWPYLETFTEDVATEIIQELQ--CKPDLIIGNY 391 (784)
Q Consensus 325 -~~~~~e~v-~~~~~v~IlrvP~~~---~~~-~~~-----~~isr~~l~~yl~~f~~~~~~~i~~~~~--~~pDIIh~~~ 391 (784)
.+...+.. ...+++.+++++... ..+ ... .|.. .+..+..+...+. .+.+.+. .+|||||+|.
T Consensus 62 ~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~Divh~~~ 137 (485)
T 2qzs_A 62 TFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTD---NVLRFALLGWVGA-EMASGLDPFWRPDVVHAHD 137 (485)
T ss_dssp CTTCCEEEEEEEETTEEEEEEECHHHHCCSSCSSBCTTSCBCTT---HHHHHHHHHHHHH-HHTTTSSTTCCCSEEEEET
T ss_pred ccCCcEEEEEEEECCcEEEEEeChhhccCCCCccCCcccCCCCc---hHHHHHHHHHHHH-HHHHHhccCCCCCEEEeec
Confidence 00000000 012468888876321 000 000 0000 0001111222222 2222222 6899999999
Q ss_pred CChhHHHHHHH-HhCCCcEEEEecCCcccCC-CCCcchhhhcccc------ccccchhhhhHHHhcccCEEEecChHhHh
Q 003947 392 SDGNIVASLLA-HKLDVTQCTIAHALELTKY-PDSDINWKKLDDK------YHFSCQFTADLFAMNRTDFIITSTFQEIA 463 (784)
Q Consensus 392 ~~~~lva~lla-r~~gvp~V~t~H~l~~~k~-~~s~~~~~~~~~~------y~~~~~~~~e~~a~~~AD~IIt~S~~~~~ 463 (784)
+.+++++.+++ +..++|+|+|.|+...... .........+... ..+......++..++.||.||++|+..++
T Consensus 138 ~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 217 (485)
T 2qzs_A 138 WHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAR 217 (485)
T ss_dssp GGGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHH
T ss_pred cchhHHHHHHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHH
Confidence 77777777777 6789999999999743211 0000000000000 00111123456778999999999988776
Q ss_pred hccccccccccccccccccceeeecCCCC------CC--CceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchh
Q 003947 464 GSKDTVGQYESHTAFSLPGLYRVVNGIDA------FD--PKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVE 535 (784)
Q Consensus 464 ~~~~~vgqYe~~~~f~~p~l~~~~~gi~~------f~--~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~ 535 (784)
.+.+. ..|++. .. .++.+||||+|.+.|.|.........-....+....-....
T Consensus 218 ~~~~~------------------~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (485)
T 2qzs_A 218 EITEP------------------QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQ 279 (485)
T ss_dssp HTTSH------------------HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHH
T ss_pred HHhcc------------------ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHH
Confidence 33221 001110 02 68999999999998877532100000000000000000123
Q ss_pred hhhhhccccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCC
Q 003947 536 NKEHLCVLKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLN 615 (784)
Q Consensus 536 ~~~~~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~ 615 (784)
.++++|+..++++++|+++||+.+.||++.+++|++.+.+ ++++|+|+|+|+. .+.+.+++++++++
T Consensus 280 ~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~---------~~~~~l~~~~~~~~-- 346 (485)
T 2qzs_A 280 LQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDP---------VLQEGFLAAAAEYP-- 346 (485)
T ss_dssp HHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECH---------HHHHHHHHHHHHST--
T ss_pred HHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCch---------HHHHHHHHHHHhCC--
Confidence 4456777333378999999999999999999999999976 4899999999852 24567788888876
Q ss_pred CcEE-EccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC---------ceE
Q 003947 616 GQFR-WISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHG---------KSG 685 (784)
Q Consensus 616 ~~V~-flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg---------~~G 685 (784)
++|. |.| . +.+++..+|+. +|++|+||.+|+||++++||||||+|||+|+.||+.|++.++ .+|
T Consensus 347 ~~v~~~~g----~-~~~~~~~~~~~-adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G 420 (485)
T 2qzs_A 347 GQVGVQIG----Y-HEAFSHRIMGG-ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASG 420 (485)
T ss_dssp TTEEEEES----C-CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCB
T ss_pred CcEEEeCC----C-CHHHHHHHHHh-CCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccce
Confidence 6886 787 3 45677899995 999999999999999999999999999999999999999998 899
Q ss_pred EEECCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003947 686 FHIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 686 ~li~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~ 744 (784)
++++++|++++|++|.+++ .+..|++.+++|++++++ ++|||+.++++++++|+.
T Consensus 421 ~l~~~~d~~~la~~i~~ll-~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~ly~~ 475 (485)
T 2qzs_A 421 FVFEDSNAWSLLRAIRRAF-VLWSRPSLWRFVQRQAMA---MDFSWQVAAKSYRELYYR 475 (485)
T ss_dssp EEECSSSHHHHHHHHHHHH-HHHTSHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHH
Confidence 9999999999999998654 233799999999999974 799999999999999975
No 8
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=1e-39 Score=371.31 Aligned_cols=432 Identities=14% Similarity=0.173 Sum_probs=280.5
Q ss_pred eEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCC--C--------
Q 003947 255 FNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGT--T-------- 324 (784)
Q Consensus 255 mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~--~-------- 324 (784)
|||++++.+.+|. +..||.+.++. +|+++|+++||+|+ |+|...+..... .
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~~~~~~~~~~~~~ 61 (485)
T 1rzu_A 1 MNVLSVSSEIYPL-------IKTGGLADVVG--------ALPIALEAHGVRTR----TLIPGYPAVKAAVTDPVKCFEFT 61 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCHHHHHHCCSCEEEEEES
T ss_pred CeEEEEeeeeccc-------cccccHHHHHH--------HHHHHHHHcCCeEE----EEecccccccccccccceeEEEE
Confidence 7999999877631 24699999999 66666799999999 888653211000 0
Q ss_pred --cCcceeee-cCcCCeEEEEccCCCC---c-ccccccccccCChh---hHHHHHHHHHHHHHHHc--CCCceEEEEcCC
Q 003947 325 --CGQRVEKV-YGTKYSDILRVPFRTE---E-GIVRKWISRFEVWP---YLETFTEDVATEIIQEL--QCKPDLIIGNYS 392 (784)
Q Consensus 325 --~~~~~e~v-~~~~~v~IlrvP~~~~---~-~~~~~~isr~~l~~---yl~~f~~~~~~~i~~~~--~~~pDIIh~~~~ 392 (784)
.+...... ....++++++++.... . ++... ........ .+..|...+. .+.+.+ ..+|||||+|.+
T Consensus 62 ~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~DiIh~~~~ 139 (485)
T 1rzu_A 62 DLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLG-QTGKDYPDNWKRFAALSLAAA-RIGAGVLPGWRPDMVHAHDW 139 (485)
T ss_dssp CSSSCCEEEEEEEETTEEEEEEECHHHHCSSSCSSBC-TTSSBCTTHHHHHHHHHHHHH-HHHTTCSSSCCCSEEEEEHH
T ss_pred EecCCeEEEEEEEecCceEEEEeChHHhCCCccccCC-cccccccchHHHHHHHHHHHH-HHHHHhccCCCCCEEEeccc
Confidence 00000000 0124688888764210 0 00000 00000000 1111222222 333322 568999999987
Q ss_pred ChhHHHHHHHHh--CCCcEEEEecCCcccCC-CCCcc-----hhhhcc-ccccccchhhhhHHHhcccCEEEecChHhHh
Q 003947 393 DGNIVASLLAHK--LDVTQCTIAHALELTKY-PDSDI-----NWKKLD-DKYHFSCQFTADLFAMNRTDFIITSTFQEIA 463 (784)
Q Consensus 393 ~~~lva~llar~--~gvp~V~t~H~l~~~k~-~~s~~-----~~~~~~-~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~ 463 (784)
.+++++.++++. .++|+|++.|+...... ..... .+..+. ....+......++..++.||.||++|+..++
T Consensus 140 ~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 219 (485)
T 1rzu_A 140 QAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAE 219 (485)
T ss_dssp HHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHH
T ss_pred chhHHHHHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHH
Confidence 666677777765 89999999999753211 00000 000000 0000111113456778999999999998776
Q ss_pred hccccccccccccccccccceeeecCCCCCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhccc
Q 003947 464 GSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVL 543 (784)
Q Consensus 464 ~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gll 543 (784)
.+.+.. |. +.++.+ +.....++.+||||+|.+.|.|..............++...-+....++++|+
T Consensus 220 ~~~~~~--~g----~~~~~~------~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~- 286 (485)
T 1rzu_A 220 EILTAE--FG----MGLEGV------IGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRI- 286 (485)
T ss_dssp HTTSHH--HH----TTCHHH------HHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTC-
T ss_pred HHhccc--cC----cchHHH------HHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCC-
Confidence 332210 00 000000 00125689999999999988875421000000000000000001133456776
Q ss_pred cCCC-CCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEE-Ec
Q 003947 544 KDSS-KPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFR-WI 621 (784)
Q Consensus 544 ~~~~-k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~-fl 621 (784)
+++ +++|+++||+.+.||++.+++|+.++.+ ++++|+|+|+|+. .+.+.+++++++++ ++|. |.
T Consensus 287 -~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~---------~~~~~l~~~~~~~~--~~v~~~~ 352 (485)
T 1rzu_A 287 -DDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDV---------ALEGALLAAASRHH--GRVGVAI 352 (485)
T ss_dssp -CCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCH---------HHHHHHHHHHHHTT--TTEEEEE
T ss_pred -CCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCch---------HHHHHHHHHHHhCC--CcEEEec
Confidence 333 6799999999999999999999999976 4899999999852 23467788888875 6887 78
Q ss_pred cCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC---------ceEEEECCCC
Q 003947 622 SSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHG---------KSGFHIDPYK 692 (784)
Q Consensus 622 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg---------~~G~li~p~d 692 (784)
| . +.+++..+++. +|++|+||.+|+||++++||||||+|||+|+.||+.|++.++ .+|++++++|
T Consensus 353 g----~-~~~~~~~~~~~-adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d 426 (485)
T 1rzu_A 353 G----Y-NEPLSHLMQAG-CDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVT 426 (485)
T ss_dssp S----C-CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCS
T ss_pred C----C-CHHHHHHHHhc-CCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCC
Confidence 7 3 45677899995 999999999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003947 693 GDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 693 ~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~ 744 (784)
+++++++|.+++ .+.+|++.+++|++++++ ++|||+.++++++++|+.
T Consensus 427 ~~~la~~i~~ll-~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~~y~~ 474 (485)
T 1rzu_A 427 LDGLKQAIRRTV-RYYHDPKLWTQMQKLGMK---SDVSWEKSAGLYAALYSQ 474 (485)
T ss_dssp HHHHHHHHHHHH-HHHTCHHHHHHHHHHHHT---CCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhCCHHHHHHHHHHHHH---HhCChHHHHHHHHHHHHH
Confidence 999999998654 233799999999999974 789999999999999974
No 9
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=4.8e-39 Score=355.67 Aligned_cols=358 Identities=18% Similarity=0.258 Sum_probs=262.5
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCCcCcceeeecCcCCeEEEEccCCCCcccccc
Q 003947 275 PDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTTCGQRVEKVYGTKYSDILRVPFRTEEGIVRK 354 (784)
Q Consensus 275 p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~~~~~~e~v~~~~~v~IlrvP~~~~~~~~~~ 354 (784)
|..||.+.++. +|++.|+++||+|+ |+|...+... . ...+++.+..++......
T Consensus 24 p~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~--------~--~~~~~i~~~~~~~~~~~~---- 77 (394)
T 2jjm_A 24 PSVGGSGVVGT--------ELGKQLAERGHEIH----FITSGLPFRL--------N--KVYPNIYFHEVTVNQYSV---- 77 (394)
T ss_dssp C--CHHHHHHH--------HHHHHHHHTTCEEE----EECSSCC--------------CCCTTEEEECCCCC--------
T ss_pred CCCCCHHHHHH--------HHHHHHHhCCCEEE----EEeCCCCCcc--------c--ccCCceEEEecccccccc----
Confidence 55799999999 56666799999999 8886532110 0 112356666555432110
Q ss_pred cccccCChhhHHHHHHHHHHHHHHHcCCCceEEEEcCCChh-HHHHHHHHhC--CCcEEEEecCCcccCCCCCcchhhhc
Q 003947 355 WISRFEVWPYLETFTEDVATEIIQELQCKPDLIIGNYSDGN-IVASLLAHKL--DVTQCTIAHALELTKYPDSDINWKKL 431 (784)
Q Consensus 355 ~isr~~l~~yl~~f~~~~~~~i~~~~~~~pDIIh~~~~~~~-lva~llar~~--gvp~V~t~H~l~~~k~~~s~~~~~~~ 431 (784)
+....+...+...+.+.+.+ .+||+||+|+..+. +.+.++++.. ++|+|.+.|+........
T Consensus 78 ----~~~~~~~~~~~~~l~~~l~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~-------- 142 (394)
T 2jjm_A 78 ----FQYPPYDLALASKMAEVAQR---ENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGS-------- 142 (394)
T ss_dssp ----CCSCCHHHHHHHHHHHHHHH---HTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTT--------
T ss_pred ----cccccccHHHHHHHHHHHHH---cCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccCC--------
Confidence 11111222233334444443 38999999987654 3444444444 599999999853211100
Q ss_pred cccccccchhhhhHHHhcccCEEEecChHhHhhccccccccccccccccccceeeecCCCCCCCceEEecCCCCCCCCCC
Q 003947 432 DDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIYFP 511 (784)
Q Consensus 432 ~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f~p 511 (784)
...+ ...++..++.+|.||++|+...+...+. .+. ..++.+||||+|.+.|.+
T Consensus 143 ~~~~-----~~~~~~~~~~ad~ii~~s~~~~~~~~~~-------------------~~~---~~~~~vi~ngv~~~~~~~ 195 (394)
T 2jjm_A 143 DPSL-----NNLIRFGIEQSDVVTAVSHSLINETHEL-------------------VKP---NKDIQTVYNFIDERVYFK 195 (394)
T ss_dssp CTTT-----HHHHHHHHHHSSEEEESCHHHHHHHHHH-------------------TCC---SSCEEECCCCCCTTTCCC
T ss_pred CHHH-----HHHHHHHHhhCCEEEECCHHHHHHHHHh-------------------hCC---cccEEEecCCccHHhcCC
Confidence 0001 1124457889999999998877632221 111 468999999999998877
Q ss_pred CcHHHHhhhcchhhhHHhhcCchhhhhhhccccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 003947 512 YMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRK 591 (784)
Q Consensus 512 ~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~ 591 (784)
..... .++.+|+ ++++++|+++||+.+.||++.+++|+..+.+. ++++|+|+|+|+.
T Consensus 196 ~~~~~-------------------~~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~- 252 (394)
T 2jjm_A 196 RDMTQ-------------------LKKEYGI--SESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPE- 252 (394)
T ss_dssp CCCHH-------------------HHHHTTC--C---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEECCCTT-
T ss_pred cchHH-------------------HHHHcCC--CCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCEEEEECCchH-
Confidence 53322 1234555 46788999999999999999999999999875 5799999998854
Q ss_pred CcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcC
Q 003947 592 ESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATC 671 (784)
Q Consensus 592 ~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~ 671 (784)
.+.++++++++++.++|.|+|. .+++..+++. +|++|+||..|+||++++|||+||+|||+|+
T Consensus 253 ----------~~~l~~~~~~~~l~~~v~~~g~------~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~PvI~~~ 315 (394)
T 2jjm_A 253 ----------FCTILQLVKNLHIEDRVLFLGK------QDNVAELLAM-SDLMLLLSEKESFGLVLLEAMACGVPCIGTR 315 (394)
T ss_dssp ----------HHHHHHHHHTTTCGGGBCCCBS------CSCTHHHHHT-CSEEEECCSCCSCCHHHHHHHHTTCCEEEEC
T ss_pred ----------HHHHHHHHHHcCCCCeEEEeCc------hhhHHHHHHh-CCEEEeccccCCCchHHHHHHhcCCCEEEec
Confidence 3668889999999999999994 2468888885 9999999999999999999999999999999
Q ss_pred ccccccccccCceEEEECCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003947 672 NGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 672 ~GG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~ 744 (784)
.||..|++.++.+|++++++|+++++++|.+++ +|++.+++|++++++++.++|||+.++++++++|+.
T Consensus 316 ~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 384 (394)
T 2jjm_A 316 VGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLL----KDEELHRNMGERARESVYEQFRSEKIVSQYETIYYD 384 (394)
T ss_dssp CTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCChHHHhhcCCceEEeCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998554 699999999999999999999999999999999975
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=5.1e-40 Score=358.84 Aligned_cols=367 Identities=15% Similarity=0.212 Sum_probs=262.6
Q ss_pred eEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCCcCcceeeecC
Q 003947 255 FNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTTCGQRVEKVYG 334 (784)
Q Consensus 255 mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~~~~~~e~v~~ 334 (784)
|||++++++.. | .||.+.++. +|++.|+++||+|+ |+|...+.. .
T Consensus 1 MkIl~i~~~~~---------~-~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~-------------~ 45 (374)
T 2iw1_A 1 MIVAFCLYKYF---------P-FGGLQRDFM--------RIASTVAARGHHVR----VYTQSWEGD-------------C 45 (374)
T ss_dssp -CEEEECSEEC---------T-TCHHHHHHH--------HHHHHHHHTTCCEE----EEESEECSC-------------C
T ss_pred CeEEEEEeecC---------C-CcchhhHHH--------HHHHHHHhCCCeEE----EEecCCCCC-------------C
Confidence 79999987654 2 499999999 56666799999999 888652211 0
Q ss_pred cCCeEEEEccCCCCcccccccccccCChhhHHHHHHHHHHHHHHHcCCCceEEEEcCCChhHHHHHHHHhCCCcEEEEec
Q 003947 335 TKYSDILRVPFRTEEGIVRKWISRFEVWPYLETFTEDVATEIIQELQCKPDLIIGNYSDGNIVASLLAHKLDVTQCTIAH 414 (784)
Q Consensus 335 ~~~v~IlrvP~~~~~~~~~~~isr~~l~~yl~~f~~~~~~~i~~~~~~~pDIIh~~~~~~~lva~llar~~gvp~V~t~H 414 (784)
.+++++.++|...... ......+...+.+.+. ..+||+||+|...+++.+..+++..+++.+.+.|
T Consensus 46 ~~~~~v~~~~~~~~~~-----------~~~~~~~~~~l~~~i~---~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (374)
T 2iw1_A 46 PKAFELIQVPVKSHTN-----------HGRNAEYYAWVQNHLK---EHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEK 111 (374)
T ss_dssp CTTCEEEECCCCCSSH-----------HHHHHHHHHHHHHHHH---HSCCSEEEESSCCTTCSEEECCSCCHHHHHHHHC
T ss_pred CCCcEEEEEccCcccc-----------hhhHHHHHHHHHHHHh---ccCCCEEEEecCCCCceeeeccccccceeeeecc
Confidence 1367888888653211 0111222233333333 3489999998865432221112222222222223
Q ss_pred CCcccCCCCCcchhhhccccccccchhhhhHHHhc--ccCEEEecChHhHhhccccccccccccccccccceeeecCCCC
Q 003947 415 ALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMN--RTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGIDA 492 (784)
Q Consensus 415 ~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~--~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~ 492 (784)
+... .....+.+.. ..++..+. .+|.|+++|+...+...+ ..|++
T Consensus 112 ~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~d~ii~~s~~~~~~~~~-------------------~~~~~- 158 (374)
T 2iw1_A 112 GFLY-----------RLTSRYRHYA--AFERATFEQGKSTKLMMLTDKQIADFQK-------------------HYQTE- 158 (374)
T ss_dssp CHHH-----------HTSHHHHHHH--HHHHHHHSTTCCCEEEESCHHHHHHHHH-------------------HHCCC-
T ss_pred cchh-----------hhcHHHHHHH--HHHHHHhhccCCcEEEEcCHHHHHHHHH-------------------HhCCC-
Confidence 2110 0111111111 12333343 799999999887763221 12333
Q ss_pred CCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhccccCCCCCEEEEEecccCCCChHHHHHHHHH
Q 003947 493 FDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPILFTMARLDRVKNLTGLVEWYGK 572 (784)
Q Consensus 493 f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~ 572 (784)
..++.+||||+|.+.|.|......+ ...++++|+ ++++++|+++||+.+.||++.+++|+..
T Consensus 159 -~~~~~vi~ngv~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~i~~~G~~~~~K~~~~li~a~~~ 220 (374)
T 2iw1_A 159 -PERFQILPPGIYPDRKYSEQIPNSR---------------EIYRQKNGI--KEQQNLLLQVGSDFGRKGVDRSIEALAS 220 (374)
T ss_dssp -GGGEEECCCCCCGGGSGGGSCTTHH---------------HHHHHHTTC--CTTCEEEEEECSCTTTTTHHHHHHHHHT
T ss_pred -hhheEEecCCcCHHhcCcccchhHH---------------HHHHHHhCC--CCCCeEEEEeccchhhcCHHHHHHHHHH
Confidence 5689999999999888764321110 123355676 5678899999999999999999999999
Q ss_pred hHcc-CCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHccccEEEeCCCCC
Q 003947 573 NAKL-RELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYE 651 (784)
Q Consensus 573 l~~~-~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E 651 (784)
+.+. .++++|+|+|+|+. +.++++++++++.++|.|+|. .+++..+++. +|++|+||.+|
T Consensus 221 l~~~~~~~~~l~i~G~g~~------------~~~~~~~~~~~~~~~v~~~g~------~~~~~~~~~~-ad~~v~ps~~e 281 (374)
T 2iw1_A 221 LPESLRHNTLLFVVGQDKP------------RKFEALAEKLGVRSNVHFFSG------RNDVSELMAA-ADLLLHPAYQE 281 (374)
T ss_dssp SCHHHHHTEEEEEESSSCC------------HHHHHHHHHHTCGGGEEEESC------CSCHHHHHHH-CSEEEECCSCC
T ss_pred hHhccCCceEEEEEcCCCH------------HHHHHHHHHcCCCCcEEECCC------cccHHHHHHh-cCEEEeccccC
Confidence 8765 57899999999854 457788899999999999994 2468889995 99999999999
Q ss_pred CCcHHHHHHHHcCCcEEEcCccccccccccCceEEEEC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC
Q 003947 652 AFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHID-PYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYT 730 (784)
Q Consensus 652 ~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~-p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~yt 730 (784)
+||++++|||+||+|||+|+.||..|++.++.+|++++ |+|+++++++|.+++ +|++.+++|++++++++ ++|+
T Consensus 282 ~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~-~~~~ 356 (374)
T 2iw1_A 282 AAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKAL----TQSPLRMAWAENARHYA-DTQD 356 (374)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH-HHSC
T ss_pred CcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHH----cChHHHHHHHHHHHHHH-HHhh
Confidence 99999999999999999999999999999999999998 899999999998554 69999999999999998 5789
Q ss_pred HHHHHHHHHHHHHHh
Q 003947 731 WKIYSERLLNLSGVY 745 (784)
Q Consensus 731 w~~~a~~ll~ly~~~ 745 (784)
|...++++.++++.+
T Consensus 357 ~~~~~~~~~~~l~~~ 371 (374)
T 2iw1_A 357 LYSLPEKAADIITGG 371 (374)
T ss_dssp CSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988743
No 11
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=5.6e-39 Score=354.52 Aligned_cols=363 Identities=13% Similarity=0.168 Sum_probs=264.3
Q ss_pred CcceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCCcCcceee
Q 003947 252 PRVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTTCGQRVEK 331 (784)
Q Consensus 252 p~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~~~~~~e~ 331 (784)
.++|||++++++.. +..||.+.++. .+++.|+++||+|+ +++........ .....
T Consensus 18 ~~~MkIl~i~~~~~---------~~~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~~----~~~~~ 72 (406)
T 2gek_A 18 GSHMRIGMVCPYSF---------DVPGGVQSHVL--------QLAEVLRDAGHEVS----VLAPASPHVKL----PDYVV 72 (406)
T ss_dssp ---CEEEEECSSCT---------TSCCHHHHHHH--------HHHHHHHHTTCEEE----EEESCCTTSCC----CTTEE
T ss_pred CCcceEEEEeccCC---------CCCCcHHHHHH--------HHHHHHHHCCCeEE----EEecCCccccC----Ccccc
Confidence 45699999996443 34589999999 56666799999999 88876433210 01111
Q ss_pred ecCcCCeEEEEccCCCCcccccccccccCChhhHHHHHHHHHHHHHHHcCCCceEEEEcCCChhHHHHHHHHhCCCcEEE
Q 003947 332 VYGTKYSDILRVPFRTEEGIVRKWISRFEVWPYLETFTEDVATEIIQELQCKPDLIIGNYSDGNIVASLLAHKLDVTQCT 411 (784)
Q Consensus 332 v~~~~~v~IlrvP~~~~~~~~~~~isr~~l~~yl~~f~~~~~~~i~~~~~~~pDIIh~~~~~~~lva~llar~~gvp~V~ 411 (784)
.. + +++++|..... .+... ...+...+.+.+.+. +||+||+|.......+.++++..++|+|.
T Consensus 73 ~~---~-~~~~~~~~~~~-------~~~~~---~~~~~~~l~~~l~~~---~~Dii~~~~~~~~~~~~~~~~~~~~~~i~ 135 (406)
T 2gek_A 73 SG---G-KAVPIPYNGSV-------ARLRF---GPATHRKVKKWIAEG---DFDVLHIHEPNAPSLSMLALQAAEGPIVA 135 (406)
T ss_dssp EC---C-CCC-------------------C---CHHHHHHHHHHHHHH---CCSEEEEECCCSSSHHHHHHHHEESSEEE
T ss_pred cC---C-cEEeccccCCc-------ccccc---cHHHHHHHHHHHHhc---CCCEEEECCccchHHHHHHHHhcCCCEEE
Confidence 11 1 34445532210 01111 011222333333333 89999999887755577778888999999
Q ss_pred EecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHhHhhccccccccccccccccccceeeecCCC
Q 003947 412 IAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGID 491 (784)
Q Consensus 412 t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~ 491 (784)
+.|+..... ..+.. .++ . .+ ..++.+|.+|++|....+...+ +++
T Consensus 136 ~~h~~~~~~-----~~~~~---~~~----~-~~-~~~~~~d~ii~~s~~~~~~~~~---------------------~~~ 180 (406)
T 2gek_A 136 TFHTSTTKS-----LTLSV---FQG----I-LR-PYHEKIIGRIAVSDLARRWQME---------------------ALG 180 (406)
T ss_dssp EECCCCCSH-----HHHHH---HHS----T-TH-HHHTTCSEEEESSHHHHHHHHH---------------------HHS
T ss_pred EEcCcchhh-----hhHHH---HHH----H-HH-HHHhhCCEEEECCHHHHHHHHH---------------------hcC
Confidence 999853211 01111 111 1 11 4688999999999887663221 112
Q ss_pred CCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhccccCCCCCEEEEEecc-cCCCChHHHHHHH
Q 003947 492 AFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPILFTMARL-DRVKNLTGLVEWY 570 (784)
Q Consensus 492 ~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL-~~~Kgi~~LieA~ 570 (784)
..++ +||||+|.+.|.+.... .++ ++++++|+++||+ .+.||++.+++++
T Consensus 181 --~~~~-vi~~~v~~~~~~~~~~~------------------------~~~--~~~~~~i~~~G~~~~~~Kg~~~li~a~ 231 (406)
T 2gek_A 181 --SDAV-EIPNGVDVASFADAPLL------------------------DGY--PREGRTVLFLGRYDEPRKGMAVLLAAL 231 (406)
T ss_dssp --SCEE-ECCCCBCHHHHHTCCCC------------------------TTC--SCSSCEEEEESCTTSGGGCHHHHHHHH
T ss_pred --CCcE-EecCCCChhhcCCCchh------------------------hhc--cCCCeEEEEEeeeCccccCHHHHHHHH
Confidence 4578 99999998766543210 111 2356899999999 9999999999999
Q ss_pred HHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHccccEEEeCCC-
Q 003947 571 GKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPAL- 649 (784)
Q Consensus 571 ~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~- 649 (784)
.++.+..++++|+|+|+++ . +.++++++++ .++|.|+| .++..++..+++. +|++|+||.
T Consensus 232 ~~l~~~~~~~~l~i~G~~~-----------~-~~l~~~~~~~--~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~~ 292 (406)
T 2gek_A 232 PKLVARFPDVEILIVGRGD-----------E-DELREQAGDL--AGHLRFLG----QVDDATKASAMRS-ADVYCAPHLG 292 (406)
T ss_dssp HHHHTTSTTCEEEEESCSC-----------H-HHHHHHTGGG--GGGEEECC----SCCHHHHHHHHHH-SSEEEECCCS
T ss_pred HHHHHHCCCeEEEEEcCCc-----------H-HHHHHHHHhc--cCcEEEEe----cCCHHHHHHHHHH-CCEEEecCCC
Confidence 9998888899999999984 1 5567777776 68999999 7778899999995 999999996
Q ss_pred CCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC
Q 003947 650 YEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKY 729 (784)
Q Consensus 650 ~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~y 729 (784)
.|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++ +|++.+.+|++++++++. +|
T Consensus 293 ~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~-~~ 367 (406)
T 2gek_A 293 GESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGIL----EDDQLRAGYVARASERVH-RY 367 (406)
T ss_dssp CCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHGG-GG
T ss_pred CCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHH-hC
Confidence 9999999999999999999999999999999999999999999999999998554 699999999999999997 99
Q ss_pred CHHHHHHHHHHHHHH
Q 003947 730 TWKIYSERLLNLSGV 744 (784)
Q Consensus 730 tw~~~a~~ll~ly~~ 744 (784)
+|+.++++++++|+.
T Consensus 368 s~~~~~~~~~~~~~~ 382 (406)
T 2gek_A 368 DWSVVSAQIMRVYET 382 (406)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999985
No 12
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=6e-38 Score=349.37 Aligned_cols=287 Identities=20% Similarity=0.235 Sum_probs=222.4
Q ss_pred CCceEEEEcCCChhHHHHHHHHhCCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHh
Q 003947 382 CKPDLIIGNYSDGNIVASLLAHKLDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQE 461 (784)
Q Consensus 382 ~~pDIIh~~~~~~~lva~llar~~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~ 461 (784)
.+|||||+|.+.+...+.++++ ++|+|.+.|+..... ....| ++ .+ ..+..+|.+|+++...
T Consensus 125 ~~~Dvv~~~~~~~~~~~~~~~~--~~p~v~~~h~~~~~~---~~~~~-------~~-----~~-~~~~~~~~~i~~~s~~ 186 (416)
T 2x6q_A 125 SSFDYVLVHDPQPAALIEFYEK--KSPWLWRCHIDLSSP---NREFW-------EF-----LR-RFVEKYDRYIFHLPEY 186 (416)
T ss_dssp GGSSEEEEESSTTGGGGGGSCC--CSCEEEECCSCCSSC---CHHHH-------HH-----HH-HHHTTSSEEEESSGGG
T ss_pred cCCCEEEEeccchhhHHHHHHh--cCCEEEEEccccCCc---cHHHH-------HH-----HH-HHHHhCCEEEEechHH
Confidence 4899999998876544443332 389999999854211 00011 11 11 2356777776444322
Q ss_pred HhhccccccccccccccccccceeeecCCCCCCCceEEecCCCCCCCCCCCc--HHHHhhhcchhhhHHhhcCchhhhhh
Q 003947 462 IAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIYFPYM--EEKRRLKHFHSEIEELLYSPVENKEH 539 (784)
Q Consensus 462 ~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f~p~~--~~~~rl~~~~~~~~~~l~~~~~~~~~ 539 (784)
.. + +++ ..++.+||||+|...|.+.. .... ...+++
T Consensus 187 ~~---~---------------------~~~--~~~~~vi~ngvd~~~~~~~~~~~~~~----------------~~~r~~ 224 (416)
T 2x6q_A 187 VQ---P---------------------ELD--RNKAVIMPPSIDPLSEKNVELKQTEI----------------LRILER 224 (416)
T ss_dssp SC---T---------------------TSC--TTTEEECCCCBCTTSTTTSCCCHHHH----------------HHHHHH
T ss_pred HH---h---------------------hCC--ccceEEeCCCCChhhhcccccChhhH----------------HHHHHH
Confidence 11 0 122 46899999999987775421 1111 122355
Q ss_pred hccccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEE
Q 003947 540 LCVLKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFR 619 (784)
Q Consensus 540 ~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~ 619 (784)
+|+ ++++++|+++||+.+.||++.+++|+..+.+..|+++|+|+|+|+.. +. ...+.++++++++++.++|.
T Consensus 225 ~~~--~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~---~~---~~~~~l~~~~~~~~~~~~V~ 296 (416)
T 2x6q_A 225 FDV--DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHD---DP---EGWIYFEKTLRKIGEDYDVK 296 (416)
T ss_dssp TTC--CTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTT---CH---HHHHHHHHHHHHHTTCTTEE
T ss_pred hCC--CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCccc---ch---hHHHHHHHHHHHhCCCCcEE
Confidence 676 66789999999999999999999999999888899999999999641 11 23456778889999999999
Q ss_pred EccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHH
Q 003947 620 WISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGI 699 (784)
Q Consensus 620 flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lAe~ 699 (784)
|+|+.+ .++.+++..+++. +|++|+||..|+||++++||||||+|||+|+.||..|++.++.+|++++ |+++++++
T Consensus 297 ~~G~~~-~~~~~~~~~~~~~-ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d~~~la~~ 372 (416)
T 2x6q_A 297 VLTNLI-GVHAREVNAFQRA-SDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--DANEAVEV 372 (416)
T ss_dssp EEEGGG-TCCHHHHHHHHHH-CSEEEECCSSCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--SHHHHHHH
T ss_pred EecccC-CCCHHHHHHHHHh-CCEEEECCCcCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--CHHHHHHH
Confidence 999554 3457799999995 9999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003947 700 LVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 700 I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~ 744 (784)
|.+++ +||+.+++|+++|++++.++|||+.++++++++|+.
T Consensus 373 i~~ll----~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 413 (416)
T 2x6q_A 373 VLYLL----KHPEVSKEMGAKAKERVRKNFIITKHMERYLDILNS 413 (416)
T ss_dssp HHHHH----HCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHT
T ss_pred HHHHH----hCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 98554 699999999999999998899999999999999874
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=7.4e-37 Score=339.88 Aligned_cols=359 Identities=13% Similarity=0.108 Sum_probs=261.1
Q ss_pred eEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCCcCcceeeecC
Q 003947 255 FNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTTCGQRVEKVYG 334 (784)
Q Consensus 255 mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~~~~~~e~v~~ 334 (784)
|||++++++. |..||.+.++. +|+++|+++ |+|+ |+|.... |......
T Consensus 1 MkI~~v~~~~----------p~~gG~~~~~~--------~l~~~L~~~-~~V~----v~~~~~~---g~~~~~~------ 48 (413)
T 3oy2_A 1 MKLIIVGAHS----------SVPSGYGRVMR--------AIVPRISKA-HEVI----VFGIHAF---GRSVHAN------ 48 (413)
T ss_dssp CEEEEEEECT----------TCCSHHHHHHH--------HHHHHHTTT-SEEE----EEEESCC---SCCSCSS------
T ss_pred CeEEEecCCC----------CCCCCHHHHHH--------HHHHHHHhc-CCeE----EEeecCC---Ccccccc------
Confidence 8999999764 34599999999 666667999 9999 8875432 1100000
Q ss_pred cCCeEEEEccCCCCcccccccccccCChhhHHHHHHHHHHHHHHHcCCCceEEEEcCCChhHHHHHHHHhCCCc----EE
Q 003947 335 TKYSDILRVPFRTEEGIVRKWISRFEVWPYLETFTEDVATEIIQELQCKPDLIIGNYSDGNIVASLLAHKLDVT----QC 410 (784)
Q Consensus 335 ~~~v~IlrvP~~~~~~~~~~~isr~~l~~yl~~f~~~~~~~i~~~~~~~pDIIh~~~~~~~lva~llar~~gvp----~V 410 (784)
.......... .. .+.+.. .+.+ ..+.+.+... +||+||+|++ ....+..+++..++| .+
T Consensus 49 ---~~~~~~~~~~---~~-~~~~~~-~~~~-----~~l~~~l~~~---~~Div~~~~~-~~~~~~~~~~~~~~~~~~~~~ 111 (413)
T 3oy2_A 49 ---IEEFDAQTAE---HV-RGLNEQ-GFYY-----SGLSEFIDVH---KPDIVMIYND-PIVIGNYLLAMGKCSHRTKIV 111 (413)
T ss_dssp ---SEEEEHHHHH---HH-TTCCST-TCCH-----HHHHHHHHHH---CCSEEEEEEC-HHHHHHHHHHGGGCCSCCEEE
T ss_pred ---cccCCccccc---cc-cccccc-cchH-----HHHHHHHHhc---CCCEEEEcch-HHHHHHHHHHhccCCCCCcee
Confidence 1110100000 00 011100 0111 1123333333 8999999954 445566666666655 34
Q ss_pred EEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccC--EEEecChHhHhhccccccccccccccccccceeeec
Q 003947 411 TIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTD--FIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVN 488 (784)
Q Consensus 411 ~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD--~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~ 488 (784)
...|...... ... .+..++.+| .||++|....+...+ .
T Consensus 112 ~~~~~~~~~~--------~~~------------~~~~~~~~~~~~ii~~S~~~~~~~~~--------------------~ 151 (413)
T 3oy2_A 112 LYVDLVSKNI--------REN------------LWWIFSHPKVVGVMAMSKCWISDICN--------------------Y 151 (413)
T ss_dssp EEECCCSBSC--------CGG------------GGGGGGCTTEEEEEESSTHHHHHHHH--------------------T
T ss_pred eeccccchhh--------HHH------------HHHHHhccCCceEEEcCHHHHHHHHH--------------------c
Confidence 4444332110 000 123578888 999999887763222 1
Q ss_pred CCCCCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhccccCCCCCEEEEEecccCCCChHHHHH
Q 003947 489 GIDAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPILFTMARLDRVKNLTGLVE 568 (784)
Q Consensus 489 gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgi~~Lie 568 (784)
|+ +.++.+||||+|.+.|.. . ++.+++....++++|+++||+.+.||++.+++
T Consensus 152 ~~---~~~~~vi~ngvd~~~~~~---~---------------------~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~ 204 (413)
T 3oy2_A 152 GC---KVPINIVSHFVDTKTIYD---A---------------------RKLVGLSEYNDDVLFLNMNRNTARKRLDIYVL 204 (413)
T ss_dssp TC---CSCEEECCCCCCCCCCTT---H---------------------HHHTTCGGGTTSEEEECCSCSSGGGTHHHHHH
T ss_pred CC---CCceEEeCCCCCHHHHHH---H---------------------HHhcCCCcccCceEEEEcCCCchhcCcHHHHH
Confidence 22 568999999999987711 1 12345522237899999999999999999999
Q ss_pred HHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCc-------EEEccCcCCcCChhHHHHHHHccc
Q 003947 569 WYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQ-------FRWISSQMNRVRNGELYRYICDTK 641 (784)
Q Consensus 569 A~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~-------V~flG~~~~~v~~~el~~~la~aa 641 (784)
|+.++.+..++++|+|+|+|+..... ...+.++++++++++.++ |.+.| .++.+++..+|+. +
T Consensus 205 a~~~l~~~~~~~~l~ivG~g~~~~~~-----~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g----~~~~~~~~~~~~~-a 274 (413)
T 3oy2_A 205 AAARFISKYPDAKVRFLCNSHHESKF-----DLHSIALRELVASGVDNVFTHLNKIMINRT----VLTDERVDMMYNA-C 274 (413)
T ss_dssp HHHHHHHHCTTCCEEEEEECCTTCSC-----CHHHHHHHHHHHHTCSCHHHHHTTEEEECS----CCCHHHHHHHHHH-C
T ss_pred HHHHHHHhCCCcEEEEEeCCcccchh-----hHHHHHHHHHHHcCcccccccccceeeccC----cCCHHHHHHHHHh-C
Confidence 99999888899999999999752111 123667888999999987 78888 7888999999995 9
Q ss_pred cEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCce---------------EE--EECCCCHHHHHHHHHHHH
Q 003947 642 GAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKS---------------GF--HIDPYKGDQATGILVDFF 704 (784)
Q Consensus 642 dvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~---------------G~--li~p~d~e~lAe~I~~~l 704 (784)
|++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+ |+ +++++|+++++++| +++
T Consensus 275 dv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~ 353 (413)
T 3oy2_A 275 DVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFF 353 (413)
T ss_dssp SEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHT
T ss_pred CEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHh
Confidence 9999999999999999999999999999999999999999887 99 99999999999999 765
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003947 705 EKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 705 ~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~ 744 (784)
+||+.+++|++++++++.++|||+.++++++++|+.
T Consensus 354 ----~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 389 (413)
T 3oy2_A 354 ----KDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNS 389 (413)
T ss_dssp ----TSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 699999999999999998999999999999999985
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=4.3e-36 Score=325.69 Aligned_cols=311 Identities=14% Similarity=0.068 Sum_probs=240.7
Q ss_pred ceEEEEEccC--------ccccccCccCCC-CcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCC
Q 003947 254 VFNVVIFTPH--------GYFAQDNVLGYP-DTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTT 324 (784)
Q Consensus 254 ~mkI~ivs~h--------~~~~~~~~lg~p-~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~ 324 (784)
+|||++++++ .+|. .| ..||.+.++. +|++.|+++||+|+ ++|...+...
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~------~p~~~gG~~~~~~--------~l~~~L~~~G~~v~----v~~~~~~~~~--- 61 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISV------PPQGYGGIQWVVA--------NLMDGLLELGHEVF----LLGAPGSPAG--- 61 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCS------SCSSSCHHHHHHH--------HHHHHHHHTTCEEE----EESCTTSCCC---
T ss_pred ccEEEEEeccccccCccccccc------CcccCChHHHHHH--------HHHHHHHHcCCeEE----EEecCCCCCC---
Confidence 3899999987 2211 12 3599999999 55666789999999 8886532210
Q ss_pred cCcceeeecCcCCeEEEEccCCCCcccccccccccCChhhHHHHHHHHHHHHHHHcCCCceEEEEcCCChhHHHHHHHHh
Q 003947 325 CGQRVEKVYGTKYSDILRVPFRTEEGIVRKWISRFEVWPYLETFTEDVATEIIQELQCKPDLIIGNYSDGNIVASLLAHK 404 (784)
Q Consensus 325 ~~~~~e~v~~~~~v~IlrvP~~~~~~~~~~~isr~~l~~yl~~f~~~~~~~i~~~~~~~pDIIh~~~~~~~lva~llar~ 404 (784)
.+++.+++.+ .+. .+.+.+. ..+||+||+|.+.....+ ++.
T Consensus 62 ----------~~~~~~~~~~----------------~~~-------~l~~~l~---~~~~Dvi~~~~~~~~~~~---~~~ 102 (342)
T 2iuy_A 62 ----------RPGLTVVPAG----------------EPE-------EIERWLR---TADVDVVHDHSGGVIGPA---GLP 102 (342)
T ss_dssp ----------STTEEECSCC----------------SHH-------HHHHHHH---HCCCSEEEECSSSSSCST---TCC
T ss_pred ----------CCcceeccCC----------------cHH-------HHHHHHH---hcCCCEEEECCchhhHHH---Hhh
Confidence 1233332211 010 2222333 238999999987764332 567
Q ss_pred CCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHhHhhccccccccccccccccccce
Q 003947 405 LDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLY 484 (784)
Q Consensus 405 ~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~ 484 (784)
.++| |.+.|+..... ..+|.||++|+..++...
T Consensus 103 ~~~p-v~~~h~~~~~~----------------------------~~~d~ii~~S~~~~~~~~------------------ 135 (342)
T 2iuy_A 103 PGTA-FISSHHFTTRP----------------------------VNPVGCTYSSRAQRAHCG------------------ 135 (342)
T ss_dssp TTCE-EEEEECSSSBC----------------------------SCCTTEEESCHHHHHHTT------------------
T ss_pred cCCC-EEEecCCCCCc----------------------------ccceEEEEcCHHHHHHHh------------------
Confidence 8999 99999864311 018999999988776211
Q ss_pred eeecCCCCCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhccccCCCCCEEEEEecccCCCChH
Q 003947 485 RVVNGIDAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPILFTMARLDRVKNLT 564 (784)
Q Consensus 485 ~~~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgi~ 564 (784)
. ..++.+||||+|.+.|.+... . .+++++|+++||+.+.||++
T Consensus 136 ------~--~~~~~vi~ngvd~~~~~~~~~--------------------------~---~~~~~~i~~vG~~~~~Kg~~ 178 (342)
T 2iuy_A 136 ------G--GDDAPVIPIPVDPARYRSAAD--------------------------Q---VAKEDFLLFMGRVSPHKGAL 178 (342)
T ss_dssp ------C--CTTSCBCCCCBCGGGSCCSTT--------------------------C---CCCCSCEEEESCCCGGGTHH
T ss_pred ------c--CCceEEEcCCCChhhcCcccc--------------------------c---CCCCCEEEEEeccccccCHH
Confidence 1 457889999999988766431 0 23567899999999999999
Q ss_pred HHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHccccEE
Q 003947 565 GLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAF 644 (784)
Q Consensus 565 ~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~aadvf 644 (784)
.+++|++++ +++|+|+|+|+. .+.+++++++++ ++|+|+| .++..++..+++. +|++
T Consensus 179 ~li~a~~~~-----~~~l~i~G~g~~-----------~~~l~~~~~~~~--~~v~~~g----~~~~~~l~~~~~~-adv~ 235 (342)
T 2iuy_A 179 EAAAFAHAC-----GRRLVLAGPAWE-----------PEYFDEITRRYG--STVEPIG----EVGGERRLDLLAS-AHAV 235 (342)
T ss_dssp HHHHHHHHH-----TCCEEEESCCCC-----------HHHHHHHHHHHT--TTEEECC----CCCHHHHHHHHHH-CSEE
T ss_pred HHHHHHHhc-----CcEEEEEeCccc-----------HHHHHHHHHHhC--CCEEEec----cCCHHHHHHHHHh-CCEE
Confidence 999999986 689999999864 245666777777 7999999 7778899999995 9999
Q ss_pred EeCCC----------CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CceEEEECCCCHHHHHHHHHHHHHHhcCCHH
Q 003947 645 VQPAL----------YEAFGLTVVEAMTCGLPTFATCNGGPAEIIVH--GKSGFHIDPYKGDQATGILVDFFEKCKVDPG 712 (784)
Q Consensus 645 V~PS~----------~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~d--g~~G~li~p~d~e~lAe~I~~~l~~ll~dp~ 712 (784)
|+||. .|+||++++|||+||+|||+|+.||..|++.+ +.+|+++++ |+++++++|.+ +++
T Consensus 236 v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~----l~~--- 307 (342)
T 2iuy_A 236 LAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-APDEARRTLAG----LPA--- 307 (342)
T ss_dssp EECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-CHHHHHHHHHT----SCC---
T ss_pred EECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-CHHHHHHHHHH----HHH---
Confidence 99999 89999999999999999999999999999999 999999999 99999999974 444
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003947 713 HWDEISQGGLKRIQEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 713 ~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~ 744 (784)
++++++++.++|||+.++++++++|+.
T Consensus 308 -----~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (342)
T 2iuy_A 308 -----SDEVRRAAVRLWGHVTIAERYVEQYRR 334 (342)
T ss_dssp -----HHHHHHHHHHHHBHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 678899999999999999999999975
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=3.2e-33 Score=314.07 Aligned_cols=346 Identities=10% Similarity=0.028 Sum_probs=225.8
Q ss_pred CcceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCCcCcceee
Q 003947 252 PRVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTTCGQRVEK 331 (784)
Q Consensus 252 p~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~~~~~~e~ 331 (784)
+..|||++++++..++ ...||.. .+. +|+++|+++||+|+ |+|+.... . ......
T Consensus 44 ~~~mrI~~v~~~~~p~-------~~~GG~~-~v~--------~la~~L~~~GheV~----Vvt~~~~~-~----~~~~~~ 98 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQE-------HMFGGIS-TAL--------KLFEQFDNKKFKKR----IILTDATP-N----PKDLQS 98 (413)
T ss_dssp CCSCEEEEEESCCCGG-------GCSHHHH-HHH--------HHHTTSCTTTCEEE----EEESSCCC-C----HHHHGG
T ss_pred CCCceEEEEeCCCCcc-------ccccHHH-HHH--------HHHHHHHHcCCceE----EEEecCCC-C----hHHHHh
Confidence 3469999999888743 1347764 466 67777899999999 99976321 0 000000
Q ss_pred ecCcCCeEEEEccCCCCcccccccccccCChhhHHHHHHHHHHHHHHHcCCCceEEEEcCCChhHHHHHHHH-------h
Q 003947 332 VYGTKYSDILRVPFRTEEGIVRKWISRFEVWPYLETFTEDVATEIIQELQCKPDLIIGNYSDGNIVASLLAH-------K 404 (784)
Q Consensus 332 v~~~~~v~IlrvP~~~~~~~~~~~isr~~l~~yl~~f~~~~~~~i~~~~~~~pDIIh~~~~~~~lva~llar-------~ 404 (784)
+ .+.... |+.....+.. .+..+... ..... ...+||+||++++.++..+..+.+ .
T Consensus 99 ~---~~~~~~--~~~~~~~~~~------~i~~~~~~-----~~~~~--~~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~ 160 (413)
T 2x0d_A 99 F---KSFKYV--MPEEDKDFAL------QIVPFNDR-----YNRTI--PVAKHDIFIATAWWTAYAAQRIVSWQSDTYGI 160 (413)
T ss_dssp G---TTSEEC--CTTCCCCCSE------EEEECSCC-----TTCCE--EECTTEEEEECSHHHHHHHHHHHHHHHHHHTC
T ss_pred h---hcccee--eccCCccccc------eeeecccc-----ccccc--cCCCCCEEEEehHHHHHHHHHhhhhhhhhccc
Confidence 1 111111 1111100000 00000000 00000 023699999998766555544421 1
Q ss_pred CCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccC--EEEecChHhHhhcccccccccccccccccc
Q 003947 405 LDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTD--FIITSTFQEIAGSKDTVGQYESHTAFSLPG 482 (784)
Q Consensus 405 ~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD--~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~ 482 (784)
.+.+.+..+|+.++..+.... . .......+..++ .+|++|...++.+.+
T Consensus 161 ~~~~~~~~v~~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~vi~~S~~~~~~l~~--------------- 211 (413)
T 2x0d_A 161 PPNKILYIIQDFEPGFYQWSS--------Q------YVLAESTYKYRGPQIAVFNSELLKQYFNN--------------- 211 (413)
T ss_dssp CCCCEEEEECSCGGGGSCSSH--------H------HHHHHHTTSCCSCEEEEEESHHHHHHHHH---------------
T ss_pred ccCcEEEEEeechhhcCccCh--------H------HHHHHHHhccCCceEEEEcCHHHHHHHHH---------------
Confidence 256778888886542211110 0 011223455555 588899887763221
Q ss_pred ceeeecCCCCCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhccccCCCCCEEEEEecc-cCCC
Q 003947 483 LYRVVNGIDAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPILFTMARL-DRVK 561 (784)
Q Consensus 483 l~~~~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL-~~~K 561 (784)
.|++ .+++.++|||+|.+.|.+.. .+ .++++.|+++||+ .+.|
T Consensus 212 -----~g~~--~~~~~~i~~g~d~~~~~~~~--------------------------~~---~~~~~~il~~gr~~~~~K 255 (413)
T 2x0d_A 212 -----KGYN--FTDEYFFQPKINTTLKNYIN--------------------------DK---RQKEKIILVYGRPSVKRN 255 (413)
T ss_dssp -----HTCC--CSEEEEECCCCCHHHHTTTT--------------------------SC---CCCCSEEEEEECTTCGGG
T ss_pred -----cCCC--CCceEEeCCCcCchhhcccc--------------------------cc---cCCCCEEEEEecCchhcc
Confidence 1333 35789999999976554310 01 2456788899997 6889
Q ss_pred ChHHHHHHHHHhHccCCC---eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH
Q 003947 562 NLTGLVEWYGKNAKLREL---VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC 638 (784)
Q Consensus 562 gi~~LieA~~~l~~~~~~---v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la 638 (784)
|++.+++|++.+.+..|+ ++|+++|+++.. .++++.++|+|+| .++.+++.++|+
T Consensus 256 g~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~------------------~~l~~~~~v~f~G----~~~~~~l~~~~~ 313 (413)
T 2x0d_A 256 AFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD------------------IALGKGIHLNSLG----KLTLEDYADLLK 313 (413)
T ss_dssp CHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC------------------EEEETTEEEEEEE----SCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh------------------hhcCCcCcEEEcC----CCCHHHHHHHHH
Confidence 999999999999877675 899999998651 3467778999999 677899999999
Q ss_pred ccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 003947 639 DTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHWDEIS 718 (784)
Q Consensus 639 ~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~ 718 (784)
. +|+||+||.+|+||++++||||||+|||++ .||..|++.+|.+|++++|.|++++|++|.+++ +||+.+++
T Consensus 314 ~-adv~v~pS~~E~~g~~~lEAmA~G~PVV~~-~~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll----~~~~~~~~-- 385 (413)
T 2x0d_A 314 R-SSIGISLMISPHPSYPPLEMAHFGLRVITN-KYENKDLSNWHSNIVSLEQLNPENIAETLVELC----MSFNNRDV-- 385 (413)
T ss_dssp H-CCEEECCCSSSSCCSHHHHHHHTTCEEEEE-CBTTBCGGGTBTTEEEESSCSHHHHHHHHHHHH----HHTC------
T ss_pred h-CCEEEEecCCCCCCcHHHHHHhCCCcEEEe-CCCcchhhhcCCCEEEeCCCCHHHHHHHHHHHH----cCHHHHHH--
Confidence 5 999999999999999999999999999995 467789999999999999999999999998554 57877776
Q ss_pred HHHHHHHHHhCCHHHHHHH
Q 003947 719 QGGLKRIQEKYTWKIYSER 737 (784)
Q Consensus 719 ~~a~~~v~~~ytw~~~a~~ 737 (784)
++++++ ++|||+..+++
T Consensus 386 -~~~~~~-~~~~W~~~~~~ 402 (413)
T 2x0d_A 386 -DKKESS-NMMFYINEFNE 402 (413)
T ss_dssp ----CCB-SCGGGCCCC--
T ss_pred -hHHHHH-HhCCHHHHHHH
Confidence 566665 68999999877
No 16
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.97 E-value=8.7e-31 Score=285.74 Aligned_cols=337 Identities=11% Similarity=0.027 Sum_probs=237.2
Q ss_pred ceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCCcCcceeeec
Q 003947 254 VFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTTCGQRVEKVY 333 (784)
Q Consensus 254 ~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~~~~~~e~v~ 333 (784)
.|||++++ . .+||.+..+. .|+++|+++||+|+ ++|...+. .. ...
T Consensus 6 ~mkIl~~~-~------------~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~--------~~-~~~ 51 (364)
T 1f0k_A 6 GKRLMVMA-G------------GTGGHVFPGL--------AVAHHLMAQGWQVR----WLGTADRM--------EA-DLV 51 (364)
T ss_dssp -CEEEEEC-C------------SSHHHHHHHH--------HHHHHHHTTTCEEE----EEECTTST--------HH-HHG
T ss_pred CcEEEEEe-C------------CCccchhHHH--------HHHHHHHHcCCEEE----EEecCCcc--------hh-hhc
Confidence 48999997 1 2378887777 56667799999999 88865211 00 011
Q ss_pred CcCCeEEEEccCCCCcc--cccccccccCChhhHHHHHHHHHHHHHHHcCCCceEEEEcCCChhHHHHHHHHhCCCcEEE
Q 003947 334 GTKYSDILRVPFRTEEG--IVRKWISRFEVWPYLETFTEDVATEIIQELQCKPDLIIGNYSDGNIVASLLAHKLDVTQCT 411 (784)
Q Consensus 334 ~~~~v~IlrvP~~~~~~--~~~~~isr~~l~~yl~~f~~~~~~~i~~~~~~~pDIIh~~~~~~~lva~llar~~gvp~V~ 411 (784)
...++.+.+++.....+ .... + ...+..+ .....+.+.+.+ .+||+||++....++.+.++++..++|+|.
T Consensus 52 ~~~g~~~~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~l~~~l~~---~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~ 124 (364)
T 1f0k_A 52 PKHGIEIDFIRISGLRGKGIKAL-I--AAPLRIF-NAWRQARAIMKA---YKPDVVLGMGGYVSGPGGLAAWSLGIPVVL 124 (364)
T ss_dssp GGGTCEEEECCCCCCTTCCHHHH-H--TCHHHHH-HHHHHHHHHHHH---HCCSEEEECSSTTHHHHHHHHHHTTCCEEE
T ss_pred cccCCceEEecCCccCcCccHHH-H--HHHHHHH-HHHHHHHHHHHh---cCCCEEEEeCCcCchHHHHHHHHcCCCEEE
Confidence 11357777776542111 0000 0 0011111 112223333333 389999999877667777888889999999
Q ss_pred EecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHhHhhccccccccccccccccccceeeecCCC
Q 003947 412 IAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGID 491 (784)
Q Consensus 412 t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~ 491 (784)
+.|+.... + ..+...+.+|.+++++...
T Consensus 125 ~~~~~~~~--------~--------------~~~~~~~~~d~v~~~~~~~------------------------------ 152 (364)
T 1f0k_A 125 HEQNGIAG--------L--------------TNKWLAKIATKVMQAFPGA------------------------------ 152 (364)
T ss_dssp EECSSSCC--------H--------------HHHHHTTTCSEEEESSTTS------------------------------
T ss_pred EecCCCCc--------H--------------HHHHHHHhCCEEEecChhh------------------------------
Confidence 99874210 0 1224567899999877321
Q ss_pred CCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhccccCCCCC-EEEEEecccCCCChHHHHHHH
Q 003947 492 AFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKP-ILFTMARLDRVKNLTGLVEWY 570 (784)
Q Consensus 492 ~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k~-iIl~vGRL~~~Kgi~~LieA~ 570 (784)
++ ++.+|+||+|.+.|.+.... +.+++ +++++ ++++.|++.+.||.+.+++|+
T Consensus 153 -~~-~~~~i~n~v~~~~~~~~~~~----------------------~~~~~--~~~~~~il~~~g~~~~~k~~~~li~a~ 206 (364)
T 1f0k_A 153 -FP-NAEVVGNPVRTDVLALPLPQ----------------------QRLAG--REGPVRVLVVGGSQGARILNQTMPQVA 206 (364)
T ss_dssp -SS-SCEECCCCCCHHHHTSCCHH----------------------HHHTT--CCSSEEEEEECTTTCCHHHHHHHHHHH
T ss_pred -cC-CceEeCCccchhhcccchhh----------------------hhccc--CCCCcEEEEEcCchHhHHHHHHHHHHH
Confidence 12 57799999998766543211 22343 34555 455667999999999999999
Q ss_pred HHhHccCCCeE-EEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHccccEEEeCCC
Q 003947 571 GKNAKLRELVN-LVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPAL 649 (784)
Q Consensus 571 ~~l~~~~~~v~-LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~ 649 (784)
.++.+ +++ ++++|+++. +.+.++++++++. +|+|+|++ +++..+++. +|++|+||.
T Consensus 207 ~~l~~---~~~~l~i~G~~~~------------~~l~~~~~~~~~~-~v~~~g~~------~~~~~~~~~-ad~~v~~sg 263 (364)
T 1f0k_A 207 AKLGD---SVTIWHQSGKGSQ------------QSVEQAYAEAGQP-QHKVTEFI------DDMAAAYAW-ADVVVCRSG 263 (364)
T ss_dssp HHHGG---GEEEEEECCTTCH------------HHHHHHHHHTTCT-TSEEESCC------SCHHHHHHH-CSEEEECCC
T ss_pred HHhcC---CcEEEEEcCCchH------------HHHHHHHhhcCCC-ceEEecch------hhHHHHHHh-CCEEEECCc
Confidence 99865 678 566777731 4567778888874 79999954 368888885 999999983
Q ss_pred CCCCcHHHHHHHHcCCcEEEcCccccc--------cccccCceEEEECCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003947 650 YEAFGLTVVEAMTCGLPTFATCNGGPA--------EIIVHGKSGFHIDPYK--GDQATGILVDFFEKCKVDPGHWDEISQ 719 (784)
Q Consensus 650 ~E~fGltvlEAMA~GlPVIaT~~GG~~--------EiI~dg~~G~li~p~d--~e~lAe~I~~~l~~ll~dp~~~~~m~~ 719 (784)
|++++|||+||+|||+|+.||.. +++.+| .|++++++| +++++++|. ++ ||+.+++|++
T Consensus 264 ----~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~----~l--~~~~~~~~~~ 332 (364)
T 1f0k_A 264 ----ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLA----GW--SRETLLTMAE 332 (364)
T ss_dssp ----HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHH----TC--CHHHHHHHHH
T ss_pred ----hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHH----hc--CHHHHHHHHH
Confidence 99999999999999999999864 466666 599999988 999999996 45 9999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Q 003947 720 GGLKRIQEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 720 ~a~~~v~~~ytw~~~a~~ll~ly~~ 744 (784)
++++.+ +.|+|+.++++++++|+.
T Consensus 333 ~~~~~~-~~~~~~~~~~~~~~~y~~ 356 (364)
T 1f0k_A 333 RARAAS-IPDATERVANEVSRVARA 356 (364)
T ss_dssp HHHHTC-CTTHHHHHHHHHHHHHTT
T ss_pred HHHHhh-ccCHHHHHHHHHHHHHHH
Confidence 999987 699999999999999874
No 17
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.97 E-value=3.7e-30 Score=297.67 Aligned_cols=335 Identities=14% Similarity=0.147 Sum_probs=224.9
Q ss_pred CCceEEEEcCCChhHHHHHHHH-hCCCcEEEEecCCcccCC----CCCcchhh--hcc-----ccccccchhhhhHHHhc
Q 003947 382 CKPDLIIGNYSDGNIVASLLAH-KLDVTQCTIAHALELTKY----PDSDINWK--KLD-----DKYHFSCQFTADLFAMN 449 (784)
Q Consensus 382 ~~pDIIh~~~~~~~lva~llar-~~gvp~V~t~H~l~~~k~----~~s~~~~~--~~~-----~~y~~~~~~~~e~~a~~ 449 (784)
.+|||+|+|+|..++.+.++++ ..++|.|+|+|++....+ ...+.++. .+. ....+......|+.+..
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKaga~ 259 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAH 259 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHHHHH
Confidence 6799999999999888888875 458999999999853222 11111211 000 00112223456778899
Q ss_pred ccCEEEecChHhHhhccccccccccccccccccceeeecCCCCCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHh
Q 003947 450 RTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEEL 529 (784)
Q Consensus 450 ~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~ 529 (784)
.||.|+|+|+..+..++... +. .+.. +||||+|.+.|.|..........-..++.+.
T Consensus 260 ~AD~ITTVS~~yA~Ei~~Ll-------------------~r---~~d~-iIpNGID~~~f~p~~~~~~~k~~aK~klq~~ 316 (725)
T 3nb0_A 260 SADVFTTVSQITAFEAEHLL-------------------KR---KPDG-ILPNGLNVIKFQAFHEFQNLHALKKEKINDF 316 (725)
T ss_dssp HSSEEEESSHHHHHHHHHHT-------------------SS---CCSE-ECCCCBCCCCCSSTTHHHHHHHHHHHHHHHH
T ss_pred hCCEEEECCHHHHHHHHHHh-------------------cC---CCCE-EEcCCccccccCcchhhHHHHHHHHHHHHHH
Confidence 99999999998887544321 11 2232 3999999999999632211111111122221
Q ss_pred hcCchhhhhhhccccCCCCCEEEEEeccc-CCCChHHHHHHHHHhHcc-------CCCeEEEEEeCCCCCCc--------
Q 003947 530 LYSPVENKEHLCVLKDSSKPILFTMARLD-RVKNLTGLVEWYGKNAKL-------RELVNLVVVGGDRRKES-------- 593 (784)
Q Consensus 530 l~~~~~~~~~~gll~~~~k~iIl~vGRL~-~~Kgi~~LieA~~~l~~~-------~~~v~LvIVG~g~~~~s-------- 593 (784)
+.+ .....+++ .++++++|+.+||++ +.||++.+++|+.++... ..-+.|+|+.++.....
T Consensus 317 l~~--~~~~~l~l-~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~ 393 (725)
T 3nb0_A 317 VRG--HFHGCFDF-DLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQA 393 (725)
T ss_dssp HHH--HTTTCCCS-CGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHH
T ss_pred HHh--hcccCCCC-CCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchh
Confidence 100 00011233 124567778899999 789999999999988642 23478888887744210
Q ss_pred -------------------------------------ccHHHHH---------------------------------HHH
Q 003947 594 -------------------------------------KDLEEQA---------------------------------EMK 603 (784)
Q Consensus 594 -------------------------------------~d~ee~~---------------------------------~~~ 603 (784)
.|.++.- .-+
T Consensus 394 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D 473 (725)
T 3nb0_A 394 EVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDAND 473 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCcc
Confidence 0111100 112
Q ss_pred HHHHHHHhcCCCCc------EEEcc-CcCC--cCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc
Q 003947 604 KMYGLIDTYKLNGQ------FRWIS-SQMN--RVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGG 674 (784)
Q Consensus 604 ~l~~li~~l~L~~~------V~flG-~~~~--~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG 674 (784)
.+...++++++.++ |.|++ +.++ .+-..++..+++. +|+||+||++|+||++++||||||+|||+|+.||
T Consensus 474 ~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~-advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG 552 (725)
T 3nb0_A 474 LILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRG-CHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSG 552 (725)
T ss_dssp HHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHH-CSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBH
T ss_pred HHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhh-ceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCC
Confidence 23344566777665 67765 2211 1112257888885 9999999999999999999999999999999999
Q ss_pred cccccccC-------ceEEEE---CCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003947 675 PAEIIVHG-------KSGFHI---DPYKGDQATGILVDFFEKCK-VDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSG 743 (784)
Q Consensus 675 ~~EiI~dg-------~~G~li---~p~d~e~lAe~I~~~l~~ll-~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~ 743 (784)
+.|+|.++ .+|+++ ++.|+++++++|.+++..+. .++..+.+|+++|++.+ ++|+|+.++++|+++|+
T Consensus 553 ~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Ye 631 (725)
T 3nb0_A 553 FGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKARQ 631 (725)
T ss_dssp HHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHHH
T ss_pred hhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Confidence 99999876 369988 35688888888888876655 47888999999998776 79999999999999998
Q ss_pred H
Q 003947 744 V 744 (784)
Q Consensus 744 ~ 744 (784)
.
T Consensus 632 ~ 632 (725)
T 3nb0_A 632 L 632 (725)
T ss_dssp H
T ss_pred H
Confidence 5
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.97 E-value=2e-31 Score=298.33 Aligned_cols=245 Identities=13% Similarity=0.068 Sum_probs=182.9
Q ss_pred CceEEEEcCCChhHHHHHHHHhCCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHhH
Q 003947 383 KPDLIIGNYSDGNIVASLLAHKLDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQEI 462 (784)
Q Consensus 383 ~pDIIh~~~~~~~lva~llar~~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~ 462 (784)
+|||||.+....... ..+++..++|++.+.|+..... ... .... ....++..++.||.||++|+..+
T Consensus 124 ~~DvIh~~~~~~~~~-~~~~~~~~~p~v~~~h~~~~~~---------~~~-~~~~--~~~~~~~~~~~ad~vi~~S~~~~ 190 (406)
T 2hy7_A 124 ESDVIVFESGIAVAF-IELAKRVNPAAKLVYRASDGLS---------TIN-VASY--IEREFDRVAPTLDVIALVSPAMA 190 (406)
T ss_dssp HCSEEEEESSGGGGG-HHHHHHHCTTSEEEEEESSCHH---------HHT-CCHH--HHHHHHHHGGGCSEEEESCGGGG
T ss_pred CCCEEEECCchHHHH-HHHHHHhCCCEEEEEeccchhh---------ccc-ccHH--HHHHHHHHHHhCCEEEEcCHHHH
Confidence 699999443322221 2456678999999999743200 000 0001 11235567899999999998766
Q ss_pred hhccccccccccccccccccceeeecCCCCCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhcc
Q 003947 463 AGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCV 542 (784)
Q Consensus 463 ~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gl 542 (784)
+...+ .. ++.+||||+|.+.|.+....
T Consensus 191 ~~~~~-------------------------~~-~i~vipngvd~~~f~~~~~~--------------------------- 217 (406)
T 2hy7_A 191 AEVVS-------------------------RD-NVFHVGHGVDHNLDQLGDPS--------------------------- 217 (406)
T ss_dssp GGCSC-------------------------ST-TEEECCCCBCTTHHHHHCSC---------------------------
T ss_pred HHHHh-------------------------cC-CEEEEcCCcChHhcCccccc---------------------------
Confidence 52110 02 89999999998766432100
Q ss_pred ccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEcc
Q 003947 543 LKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWIS 622 (784)
Q Consensus 543 l~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG 622 (784)
..+++++|+|+||+.+.||+ +..+.+..++++|+|+|+|+ ++++++.++|+|+|
T Consensus 218 -~~~~~~~i~~vGrl~~~Kg~------~~~l~~~~~~~~l~ivG~g~-------------------~~~~~l~~~V~f~G 271 (406)
T 2hy7_A 218 -PYAEGIHAVAVGSMLFDPEF------FVVASKAFPQVTFHVIGSGM-------------------GRHPGYGDNVIVYG 271 (406)
T ss_dssp -SCCSSEEEEEECCTTBCHHH------HHHHHHHCTTEEEEEESCSS-------------------CCCTTCCTTEEEEC
T ss_pred -ccCCCcEEEEEeccccccCH------HHHHHHhCCCeEEEEEeCch-------------------HHhcCCCCCEEEcC
Confidence 02234889999999999998 33344456899999999883 45678889999999
Q ss_pred CcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHH-------HcCCcEEEcCccccccccccCceEEE-ECCCCHH
Q 003947 623 SQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAM-------TCGLPTFATCNGGPAEIIVHGKSGFH-IDPYKGD 694 (784)
Q Consensus 623 ~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAM-------A~GlPVIaT~~GG~~EiI~dg~~G~l-i~p~d~e 694 (784)
.++.+++..+++. +|++|+||..|+||++++||| |||+|||+|+. +.++.+|++ ++|+|++
T Consensus 272 ----~~~~~~l~~~~~~-adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d~~ 340 (406)
T 2hy7_A 272 ----EMKHAQTIGYIKH-ARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGNAD 340 (406)
T ss_dssp ----CCCHHHHHHHHHT-CSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTCHH
T ss_pred ----CCCHHHHHHHHHh-cCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEeCCCCHH
Confidence 7778999999995 999999999999999999999 99999999987 677889999 9999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH--HHH
Q 003947 695 QATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNL--SGV 744 (784)
Q Consensus 695 ~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~l--y~~ 744 (784)
++|++|.+++ +|++ + .+.++|||+.++++++++ |..
T Consensus 341 ~la~ai~~ll----~~~~---------~-~~~~~~sw~~~a~~~~~~~~y~~ 378 (406)
T 2hy7_A 341 SVIAAITQAL----EAPR---------V-RYRQCLNWSDTTDRVLDPRAYPE 378 (406)
T ss_dssp HHHHHHHHHH----HCCC---------C-CCSCCCBHHHHHHHHHCGGGSGG
T ss_pred HHHHHHHHHH----hCcc---------h-hhhhcCCHHHHHHHHHHhhcccc
Confidence 9999998655 4655 1 234789999999999998 664
No 19
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.96 E-value=3e-28 Score=282.45 Aligned_cols=173 Identities=9% Similarity=0.059 Sum_probs=153.2
Q ss_pred hhhhccccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEe-CCCCCCcccHHHHHHHHHHHHHHHhcCCC
Q 003947 537 KEHLCVLKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVG-GDRRKESKDLEEQAEMKKMYGLIDTYKLN 615 (784)
Q Consensus 537 ~~~~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG-~g~~~~s~d~ee~~~~~~l~~li~~l~L~ 615 (784)
++.+|+ ++ .++++++||+.+ ||++.+++++.++.+..|+++|+|+| +|+ ..+.+++.++++|+.
T Consensus 368 r~~~~~--~~-~~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~-----------~~~~l~~~~~~~~l~ 432 (568)
T 2vsy_A 368 RTQCGL--PE-QGVVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWLLSGPGE-----------ADARLRAFAHAQGVD 432 (568)
T ss_dssp TGGGTC--CT-TSCEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTT-----------HHHHHHHHHHHTTCC
T ss_pred ccccCC--CC-CCEEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHH-----------HHHHHHHHHHHcCCC
Confidence 455776 33 445669999999 99999999999998888999999999 663 246788899999998
Q ss_pred -CcEEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEE-------cCcc-------ccccccc
Q 003947 616 -GQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-------TCNG-------GPAEIIV 680 (784)
Q Consensus 616 -~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIa-------T~~G-------G~~EiI~ 680 (784)
++|+|+| .++.+++..+++. +|+||+||.+ +||++++|||+||+|||+ |+.| |+.|+|.
T Consensus 433 ~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~ 506 (568)
T 2vsy_A 433 AQRLVFMP----KLPHPQYLARYRH-ADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNV 506 (568)
T ss_dssp GGGEEEEC----CCCHHHHHHHGGG-CSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBC
T ss_pred hhHEEeeC----CCCHHHHHHHHhc-CCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhc
Confidence 9999999 6777899999995 9999999999 999999999999999999 9999 9999985
Q ss_pred cCceEEEECCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHH
Q 003947 681 HGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRI--QEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 681 dg~~G~li~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v--~~~ytw~~~a~~ll~ly~~ 744 (784)
+ |+++++++|.++ ++||+.+++|++++++++ .+.|||+.++++++++|+.
T Consensus 507 ~----------~~~~la~~i~~l----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~ 558 (568)
T 2vsy_A 507 A----------DDAAFVAKAVAL----ASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQA 558 (568)
T ss_dssp S----------SHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHH
T ss_pred C----------CHHHHHHHHHHH----hcCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Confidence 5 889999999754 469999999999999998 6889999999999999974
No 20
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.96 E-value=4.3e-28 Score=277.24 Aligned_cols=316 Identities=13% Similarity=0.037 Sum_probs=211.8
Q ss_pred CCceEEEEcCCChhHHHHHHHHhC-CCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChH
Q 003947 382 CKPDLIIGNYSDGNIVASLLAHKL-DVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQ 460 (784)
Q Consensus 382 ~~pDIIh~~~~~~~lva~llar~~-gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~ 460 (784)
..+|+||+|++...+++..+++.. ++|++++.|...+ .+.. +..+ .....-...+..+|.+...+..
T Consensus 122 ~~~DiV~vHdyhl~~l~~~lr~~~~~~~i~~~~H~pfp----~~~~-~~~l-------p~~~~il~~ll~~d~i~f~~~~ 189 (482)
T 1uqt_A 122 QDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFP----TPEI-FNAL-------PTYDTLLEQLCDYDLLGFQTEN 189 (482)
T ss_dssp CTTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCC----CHHH-HTTS-------TTHHHHHHHHTTSSEEEESSHH
T ss_pred CCCCEEEEECchHHHHHHHHHHhCCCCcEEEEEcCCCC----CHHH-HhhC-------ccHHHHHHhhhccCeEEEECHH
Confidence 367999999987767777766654 7999999998532 1111 1110 0000112235567887777654
Q ss_pred hHhhccccccccccccccccccceeeecCCCCCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhh
Q 003947 461 EIAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHL 540 (784)
Q Consensus 461 ~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~ 540 (784)
............-.... ...+. ....| . ..++.+||||||.+.|.+...... .. . ....++++
T Consensus 190 ~~~~f~~~~~~~l~~~~-~~~~~-~~~~g-~--~~~v~vip~GID~~~f~~~~~~~~-~~---~--------~~~lr~~~ 252 (482)
T 1uqt_A 190 DRLAFLDCLSNLTRVTT-RSAKS-HTAWG-K--AFRTEVYPIGIEPKEIAKQAAGPL-PP---K--------LAQLKAEL 252 (482)
T ss_dssp HHHHHHHHHHHHSCEEE-ETTTE-EEETT-E--EEEEEECCCCCCHHHHHHHHHSCC-CH---H--------HHHHHHHT
T ss_pred HHHHHHHHHHHHhCCcc-ccCCe-EEECC-e--EEEEEEEeccCCHHHHHHHhcCcc-hH---H--------HHHHHHHh
Confidence 43321111000000000 00010 11112 1 357899999999987754211000 00 0 00122333
Q ss_pred ccccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCC----CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcC---
Q 003947 541 CVLKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRE----LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYK--- 613 (784)
Q Consensus 541 gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~----~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~--- 613 (784)
+ ++++|+++||+++.||++.+++|++++.+.+| ++.|++||+.... ...+..+..+.+.+++.+++
T Consensus 253 ~-----~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~--~~~~~~~l~~~l~~l~~~in~~~ 325 (482)
T 1uqt_A 253 K-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRG--DVQAYQDIRHQLENEAGRINGKY 325 (482)
T ss_dssp T-----TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCST--TSHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-----CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCcc--chHHHHHHHHHHHHHHHHHhhhc
Confidence 3 57899999999999999999999999877665 4789999974321 11233334455666665543
Q ss_pred -CC--CcEEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCC-----cEEEcCccccccccccCceE
Q 003947 614 -LN--GQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGL-----PTFATCNGGPAEIIVHGKSG 685 (784)
Q Consensus 614 -L~--~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~Gl-----PVIaT~~GG~~EiI~dg~~G 685 (784)
.. ..|++++ +.++.+++..+|+. +|+||+||..||||++++||||||+ |+|+|+.+|..+.+. +|
T Consensus 326 g~~~~~~v~~~~---g~v~~~el~~ly~~-ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l~---~g 398 (482)
T 1uqt_A 326 GQLGWTPLYYLN---QHFDRKLLMKIFRY-SDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SA 398 (482)
T ss_dssp CBTTBCSEEEEC---SCCCHHHHHHHHHH-CSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCT---TS
T ss_pred ccCCCceEEEeC---CCCCHHHHHHHHHH-ccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHhC---Ce
Confidence 22 2367543 27788999999995 9999999999999999999999997 999999888888882 79
Q ss_pred EEECCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003947 686 FHIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 686 ~li~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~ 744 (784)
++++|.|++++|++|.+++ ..+++.++++++++++++ ++|||+.+++++++.|+.
T Consensus 399 ~lv~p~d~~~lA~ai~~lL---~~~~~~r~~~~~~~~~~v-~~~s~~~~a~~~l~~l~~ 453 (482)
T 1uqt_A 399 LIVNPYDRDEVAAALDRAL---TMSLAERISRHAEMLDVI-VKNDINHWQECFISDLKQ 453 (482)
T ss_dssp EEECTTCHHHHHHHHHHHH---TCCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHh
Confidence 9999999999999998654 236788999999999998 669999999999999875
No 21
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.96 E-value=7.2e-29 Score=271.32 Aligned_cols=275 Identities=13% Similarity=0.102 Sum_probs=196.8
Q ss_pred CceEEEEcCCC-hhHHHHHHHHhCCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHh
Q 003947 383 KPDLIIGNYSD-GNIVASLLAHKLDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQE 461 (784)
Q Consensus 383 ~pDIIh~~~~~-~~lva~llar~~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~ 461 (784)
+||+||+|... .++.+.++++..++|++.+.|+... + . .+..+ . .........+.+|.++++|+..
T Consensus 95 ~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~--~---~-~~~~~------~-~~~~~~~~~~~~d~ii~~s~~~ 161 (375)
T 3beo_A 95 KPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRT--W---D-KYSPY------P-EEMNRQLTGVMADLHFSPTAKS 161 (375)
T ss_dssp CCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCC--S---C-TTSST------T-HHHHHHHHHHHCSEEEESSHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccc--c---c-ccCCC------h-hHhhhhHHhhhhheeeCCCHHH
Confidence 89999998753 4566677888899999987776521 0 0 01000 0 0011222344599999999887
Q ss_pred HhhccccccccccccccccccceeeecCCCCCCCceEEecCC-CCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhh
Q 003947 462 IAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPG-ADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHL 540 (784)
Q Consensus 462 ~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnG-vD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~ 540 (784)
.+... ..|++ ..++.+|+|| +|...+.+..... .+.++.+
T Consensus 162 ~~~~~--------------------~~g~~--~~~i~vi~n~~~d~~~~~~~~~~~-----------------~~~~~~~ 202 (375)
T 3beo_A 162 ATNLQ--------------------KENKD--ESRIFITGNTAIDALKTTVKETYS-----------------HPVLEKL 202 (375)
T ss_dssp HHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHCCSSCC-----------------CHHHHTT
T ss_pred HHHHH--------------------HcCCC--cccEEEECChhHhhhhhhhhhhhh-----------------HHHHHhc
Confidence 65211 12443 5689999999 7865543321000 0011111
Q ss_pred ccccCCCCCEEEEEecccCC-CChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEE
Q 003947 541 CVLKDSSKPILFTMARLDRV-KNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFR 619 (784)
Q Consensus 541 gll~~~~k~iIl~vGRL~~~-Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~ 619 (784)
++++.+++++||+.+. ||++.+++|+.++.+..+++++++ |+++. . ...+.+++++ +..++|.
T Consensus 203 ----~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~~-----~---~~~~~~~~~~---~~~~~v~ 266 (375)
T 3beo_A 203 ----GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHMN-----P---VVRETANDIL---GDYGRIH 266 (375)
T ss_dssp ----TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCSC-----H---HHHHHHHHHH---TTCTTEE
T ss_pred ----cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eCCCC-----H---HHHHHHHHHh---hccCCEE
Confidence 2344577899999876 999999999999987778899654 65543 1 1122223322 3346899
Q ss_pred EccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcC-ccccccccccCceEEEECCCCHHHHHH
Q 003947 620 WISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATC-NGGPAEIIVHGKSGFHIDPYKGDQATG 698 (784)
Q Consensus 620 flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~-~GG~~EiI~dg~~G~li~p~d~e~lAe 698 (784)
|+| .++..++..+++. +|++|+|| |.+++|||+||+|||+|+ .||..|++.+| +|+++++ |++++++
T Consensus 267 ~~g----~~~~~~~~~~~~~-ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d~~~la~ 334 (375)
T 3beo_A 267 LIE----PLDVIDFHNVAAR-SYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLAGT-DEETIFS 334 (375)
T ss_dssp EEC----CCCHHHHHHHHHT-CSEEEECC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEECCS-CHHHHHH
T ss_pred EeC----CCCHHHHHHHHHh-CcEEEECC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEcCC-CHHHHHH
Confidence 998 5666799999995 99999998 778999999999999996 59999999988 9999987 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003947 699 ILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLS 742 (784)
Q Consensus 699 ~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly 742 (784)
+|.++ ++||+.+++|+++++++. +.|+|+.+++.+.+++
T Consensus 335 ~i~~l----l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 335 LADEL----LSDKEAHDKMSKASNPYG-DGRASERIVEAILKHF 373 (375)
T ss_dssp HHHHH----HHCHHHHHHHCCCCCTTC-CSCHHHHHHHHHHHHT
T ss_pred HHHHH----HhChHhHhhhhhcCCCCC-CCcHHHHHHHHHHHHh
Confidence 99854 469999999999998876 7899999999998875
No 22
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.95 E-value=2.6e-28 Score=268.02 Aligned_cols=285 Identities=12% Similarity=0.077 Sum_probs=200.1
Q ss_pred CceEEEEcCC-ChhHHHHHHHHhCCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHh
Q 003947 383 KPDLIIGNYS-DGNIVASLLAHKLDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQE 461 (784)
Q Consensus 383 ~pDIIh~~~~-~~~lva~llar~~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~ 461 (784)
+||+||+|.. ..++.+.++++..++|++.+.|++.... .|..+. .........+.+|.++++|+..
T Consensus 86 ~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~------~~~~~~-------~~~~~~~~~~~~d~ii~~s~~~ 152 (384)
T 1vgv_A 86 KPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD------LYSPWP-------EEANRTLTGHLAMYHFSPTETS 152 (384)
T ss_dssp CCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSC------TTSSTT-------HHHHHHHHHTTCSEEEESSHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccccc------ccCCCc-------hHhhHHHHHhhccEEEcCcHHH
Confidence 8999999976 4466667788889999999988763211 010000 0011112345699999999877
Q ss_pred HhhccccccccccccccccccceeeecCCCCCCCceEEecCCC-CCCCCCCCcHHH-HhhhcchhhhHHhhcCchhhhhh
Q 003947 462 IAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGA-DMTIYFPYMEEK-RRLKHFHSEIEELLYSPVENKEH 539 (784)
Q Consensus 462 ~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGv-D~~~f~p~~~~~-~rl~~~~~~~~~~l~~~~~~~~~ 539 (784)
.+... ..|++ ..++.+++||+ |...+.+..... ... ..+.++.
T Consensus 153 ~~~l~--------------------~~g~~--~~~i~vi~n~~~d~~~~~~~~~~~~~~~-------------~~~~~~~ 197 (384)
T 1vgv_A 153 RQNLL--------------------RENVA--DSRIFITGNTVIDALLWVRDQVMSSDKL-------------RSELAAN 197 (384)
T ss_dssp HHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHHHHTTTCHHH-------------HHHHHTT
T ss_pred HHHHH--------------------HcCCC--hhhEEEeCChHHHHHHhhhhccccchhh-------------hHHHHHh
Confidence 65211 12443 56899999995 432111100000 000 0012234
Q ss_pred hc-cccCCC-CCEEEEEecccCC-CChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCC
Q 003947 540 LC-VLKDSS-KPILFTMARLDRV-KNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNG 616 (784)
Q Consensus 540 ~g-ll~~~~-k~iIl~vGRL~~~-Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~ 616 (784)
+| + +++ +.+++++||+.+. ||++.+++|+.++.+..++++|+++++.. . ...+.+++++. ..+
T Consensus 198 ~~~~--~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~------~---~~~~~l~~~~~---~~~ 263 (384)
T 1vgv_A 198 YPFI--DPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLN------P---NVREPVNRILG---HVK 263 (384)
T ss_dssp CTTC--CTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBC------H---HHHHHHHHHHT---TCT
T ss_pred cccc--CCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCC------H---HHHHHHHHHhh---cCC
Confidence 45 4 233 3578899999876 99999999999998877899999864421 0 12233444432 246
Q ss_pred cEEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCc-cccccccccCceEEEECCCCHHH
Q 003947 617 QFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCN-GGPAEIIVHGKSGFHIDPYKGDQ 695 (784)
Q Consensus 617 ~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~-GG~~EiI~dg~~G~li~p~d~e~ 695 (784)
+|+|+| .++.+++..+|+. +|++|.|| |.+++|||+||+|||+|+. ||..|++.+| +|+++++ |+++
T Consensus 264 ~v~~~g----~~~~~~~~~~~~~-ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d~~~ 331 (384)
T 1vgv_A 264 NVILID----PQEYLPFVWLMNH-AWLILTDS-----GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGT-DKQR 331 (384)
T ss_dssp TEEEEC----CCCHHHHHHHHHH-CSEEEESS-----STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEECS-SHHH
T ss_pred CEEEeC----CCCHHHHHHHHHh-CcEEEECC-----cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEeCC-CHHH
Confidence 899988 5556799999995 99999999 4458999999999999986 9999999888 9999988 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Q 003947 696 ATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGVYG 746 (784)
Q Consensus 696 lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~~~ 746 (784)
++++|.++ ++||+.+++|+++++++. +.|+|+.+++.++++|...|
T Consensus 332 la~~i~~l----l~d~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 377 (384)
T 1vgv_A 332 IVEEVTRL----LKDENEYQAMSRAHNPYG-DGQACSRILEALKNNRISLG 377 (384)
T ss_dssp HHHHHHHH----HHCHHHHHHHHSSCCTTC-CSCHHHHHHHHHHHTCCCC-
T ss_pred HHHHHHHH----HhChHHHhhhhhccCCCc-CCCHHHHHHHHHHHHHHhhc
Confidence 99999854 469999999999998876 78999999999999876544
No 23
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.95 E-value=6.6e-27 Score=233.86 Aligned_cols=190 Identities=14% Similarity=0.197 Sum_probs=160.1
Q ss_pred ecCCCCCCCCC--CCcH--HHHhhhcchhhhHHhhcCchhhhhhhccccCCCCCEEEEEeccc-CCCChHHHHHHHHHhH
Q 003947 500 VSPGADMTIYF--PYME--EKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPILFTMARLD-RVKNLTGLVEWYGKNA 574 (784)
Q Consensus 500 IpnGvD~~~f~--p~~~--~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~-~~Kgi~~LieA~~~l~ 574 (784)
||||+|.+.|. |... .+.+ ...++++|+ +++++|+++||+. +.||++.+++++..+.
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~---------------~~~r~~~~~---~~~~~i~~~G~~~~~~K~~~~li~a~~~l~ 63 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERK---------------KSLLSKFGM---DEGVTFMFIGRFDRGQKGVDVLLKAIEILS 63 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHH---------------HHHHHHTTC---CSCEEEEEESCBCSSSSCHHHHHHHHHHHT
T ss_pred CCCccChhhccccccccchhhHH---------------HHHHHHcCC---CCCCEEEEeeccccccCCHHHHHHHHHHHH
Confidence 79999999998 7642 0000 122355675 3556999999999 9999999999999997
Q ss_pred --ccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEE-ccCcCCcCChhHHHHHHHccccEEEeCCCCC
Q 003947 575 --KLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRW-ISSQMNRVRNGELYRYICDTKGAFVQPALYE 651 (784)
Q Consensus 575 --~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~f-lG~~~~~v~~~el~~~la~aadvfV~PS~~E 651 (784)
+..++++|+|+|+++. +..+.+++++++++ +|+| +| .++.+++..+++. +|++|+||..|
T Consensus 64 ~~~~~~~~~l~i~G~~~~---------~~~~~l~~~~~~~~---~v~~~~g----~~~~~~~~~~~~~-ad~~l~ps~~e 126 (200)
T 2bfw_A 64 SKKEFQEMRFIIIGKGDP---------ELEGWARSLEEKHG---NVKVITE----MLSREFVRELYGS-VDFVIIPSYFE 126 (200)
T ss_dssp TSGGGGGEEEEEECCBCH---------HHHHHHHHHHHHCT---TEEEECS----CCCHHHHHHHHTT-CSEEEECCSCC
T ss_pred hhccCCCeEEEEECCCCh---------HHHHHHHHHHHhcC---CEEEEec----cCCHHHHHHHHHH-CCEEEECCCCC
Confidence 6678999999999852 23467788888887 8999 99 7778899999995 99999999999
Q ss_pred CCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhCC
Q 003947 652 AFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKV-DPGHWDEISQGGLKRIQEKYT 730 (784)
Q Consensus 652 ~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~ll~-dp~~~~~m~~~a~~~v~~~yt 730 (784)
+||++++|||+||+|||+|+.||..|++ ++.+|++++++|+++++++|.++ ++ |++.+++|++++++++.+ ||
T Consensus 127 ~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l----~~~~~~~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 127 PFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKA----LELSRSDLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp SSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEEECTTCHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred CccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEEecCCCHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHh-cC
Confidence 9999999999999999999999999999 99999999999999999999854 46 999999999999999977 86
No 24
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.93 E-value=5.7e-25 Score=250.05 Aligned_cols=327 Identities=13% Similarity=0.047 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHHcC-CCceEEEEcCCChhHHHHHHHHh-CCCcEEEEecCCcccCCCCCcchhhhccccccccch--hh
Q 003947 367 TFTEDVATEIIQELQ-CKPDLIIGNYSDGNIVASLLAHK-LDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQ--FT 442 (784)
Q Consensus 367 ~f~~~~~~~i~~~~~-~~pDIIh~~~~~~~lva~llar~-~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~--~~ 442 (784)
......+..+....+ ..-|+|..|+....+++..+.++ .+.++.+-.|..+ +.+.+ ++.+.. ..
T Consensus 132 ~vN~~fA~~i~~~~~~~~~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPf----Ps~e~--------f~~Lp~~~r~ 199 (496)
T 3t5t_A 132 RFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPW----PSADY--------WRILPKEIRT 199 (496)
T ss_dssp HHHHHHHHHHHHHTTTCSSCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCC----CCHHH--------HTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCC----CCHHH--------HhhCcHhHHH
Confidence 344445555555443 35789999999987777777654 5688999999753 22221 111111 11
Q ss_pred hhHHHhcccCEEEecChHhHhhccccccccc-cccccccccceeeecCCCCCCCceEEecCCCCCCCCCCCcHHHHhhhc
Q 003947 443 ADLFAMNRTDFIITSTFQEIAGSKDTVGQYE-SHTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIYFPYMEEKRRLKH 521 (784)
Q Consensus 443 ~e~~a~~~AD~IIt~S~~~~~~~~~~vgqYe-~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~ 521 (784)
.-+..|..||.|.+.|+..+....+.....- ....-...+ .....|. ..++.++|+|||.+.|.+..... +
T Consensus 200 ell~gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~-~v~~~gr---~v~v~viP~GID~~~f~~~~~~~-~--- 271 (496)
T 3t5t_A 200 GILHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAM-TVEWRGH---RTRLRTMPLGYSPLTLDGRNPQL-P--- 271 (496)
T ss_dssp HHHHHHTTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTT-EEEETTE---EEEEEECCCCBCGGGC----CCC-C---
T ss_pred HHHHHHHhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCC-eEEECCE---EEEEEEeccEeCHHHhchhhHHH-H---
Confidence 1234788999999999877653222111000 000000000 0011111 23788999999999997753200 0
Q ss_pred chhhhHHhhcCchhhhhhhccccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCCC---eEEEEEeCCCCCCcccHHH
Q 003947 522 FHSEIEELLYSPVENKEHLCVLKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLREL---VNLVVVGGDRRKESKDLEE 598 (784)
Q Consensus 522 ~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~---v~LvIVG~g~~~~s~d~ee 598 (784)
...++++| ++++|+++||+++.||++.+++|+ ++.+.+|+ +.|++||.... +...++
T Consensus 272 ------------~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr--~~~~~y 331 (496)
T 3t5t_A 272 ------------EGIEEWAD-----GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNR--LYVPAN 331 (496)
T ss_dssp ------------TTHHHHHT-----TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCC--TTSHHH
T ss_pred ------------HHHHHHhC-----CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCC--CCchHH
Confidence 12223333 578999999999999999999999 88776665 67888885432 112344
Q ss_pred HHHHHHHHHHHHhcCCC---CcEEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcC---CcEEEcCc
Q 003947 599 QAEMKKMYGLIDTYKLN---GQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCG---LPTFATCN 672 (784)
Q Consensus 599 ~~~~~~l~~li~~l~L~---~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~G---lPVIaT~~ 672 (784)
.+..+++.+++.+.+.. ..|+|+| .++.+++..+|+. ||+||+||..||||++++|||||| .|+|+|..
T Consensus 332 ~~l~~~l~~lv~~in~~~g~~~V~f~g----~v~~~el~aly~~-ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~ 406 (496)
T 3t5t_A 332 ADYVHRVETAVAEANAELGSDTVRIDN----DNDVNHTIACFRR-ADLLIFNSTVDGQNLSTFEAPLVNERDADVILSET 406 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSEEEEE----CCCHHHHHHHHHH-CSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETT
T ss_pred HHHHHHHHHHHHHhccccCCcCEEEeC----CCCHHHHHHHHHh-ccEEEECcccccCChhHHHHHHhCCCCCCEEEeCC
Confidence 44556666666655321 1699998 6788999999994 999999999999999999999997 89999999
Q ss_pred cccccccccCceEEEECCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003947 673 GGPAEIIVHGKSGFHIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 673 GG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~ 744 (784)
+|..+.+ +.+|++++|.|++++|++|.++++ .+++.++++.++.++++ .++|+...++.+++-...
T Consensus 407 aGa~~~l--~~~allVnP~D~~~lA~AI~~aL~---m~~~er~~r~~~~~~~V-~~~d~~~W~~~fl~~L~~ 472 (496)
T 3t5t_A 407 CGAAEVL--GEYCRSVNPFDLVEQAEAISAALA---AGPRQRAEAAARRRDAA-RPWTLEAWVQAQLDGLAA 472 (496)
T ss_dssp BTTHHHH--GGGSEEECTTBHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHH-TTCBHHHHHHHHHHHHHH
T ss_pred CCCHHHh--CCCEEEECCCCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHhh
Confidence 9999888 347999999999999999997653 57788999999999998 889999999999877653
No 25
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.93 E-value=2.1e-25 Score=216.54 Aligned_cols=163 Identities=15% Similarity=0.176 Sum_probs=139.9
Q ss_pred CCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCc
Q 003947 548 KPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNR 627 (784)
Q Consensus 548 k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~ 627 (784)
+++|+++||+.+.||++.+++|+.++++ .++++|+|+|+|+. .+.++++++++++ +|.| | .
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~-~~~~~l~i~G~g~~-----------~~~~~~~~~~~~~--~v~~-g----~ 62 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKY-KQDIVLLLKGKGPD-----------EKKIKLLAQKLGV--KAEF-G----F 62 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTT-GGGEEEEEECCSTT-----------HHHHHHHHHHHTC--EEEC-C----C
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhcc-CCCeEEEEEeCCcc-----------HHHHHHHHHHcCC--eEEE-e----e
Confidence 5789999999999999999999999853 48999999999864 3667888888887 8898 9 6
Q ss_pred CChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCC-cEEE-cCccccccccccCceEEEECCCCHHHHHHHHHHHHH
Q 003947 628 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGL-PTFA-TCNGGPAEIIVHGKSGFHIDPYKGDQATGILVDFFE 705 (784)
Q Consensus 628 v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~Gl-PVIa-T~~GG~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~ 705 (784)
++.+++..+++. +|++|+||.+|+||++++|||+||+ |||+ ++.||..+++.++.+ +++++|+++++++|.+++
T Consensus 63 ~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~i~~l~- 138 (166)
T 3qhp_A 63 VNSNELLEILKT-CTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LFEPNNAKDLSAKIDWWL- 138 (166)
T ss_dssp CCHHHHHHHHTT-CSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EECTTCHHHHHHHHHHHH-
T ss_pred cCHHHHHHHHHh-CCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EEcCCCHHHHHHHHHHHH-
Confidence 778999999995 9999999999999999999999998 9999 578899999988755 788999999999998554
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Q 003947 706 KCKVDPGHWDEISQGGLKRIQEKYTWKIYSER 737 (784)
Q Consensus 706 ~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ 737 (784)
+|++.+++|++++++++ ++|||+.++++
T Consensus 139 ---~~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 139 ---ENKLERERMQNEYAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp ---HCHHHHHHHHHHHHHHH-HHHC-------
T ss_pred ---hCHHHHHHHHHHHHHHH-HHCChhhhhcC
Confidence 69999999999999998 99999998864
No 26
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.91 E-value=7.6e-24 Score=232.31 Aligned_cols=270 Identities=11% Similarity=0.037 Sum_probs=181.2
Q ss_pred CCCceEEEEcCCCh-hHHHHHHHHhCCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecCh
Q 003947 381 QCKPDLIIGNYSDG-NIVASLLAHKLDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTF 459 (784)
Q Consensus 381 ~~~pDIIh~~~~~~-~lva~llar~~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~ 459 (784)
..+||+||+|.... ++.+.++++..++|++++.|+... +. .+..+ . .........+.+|.++++|+
T Consensus 89 ~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~--~~----~~~~~------~-~~~~~~~~~~~~~~~~~~s~ 155 (376)
T 1v4v_A 89 EMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRS--GN----LKEPF------P-EEANRRLTDVLTDLDFAPTP 155 (376)
T ss_dssp HTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCC--SC----TTSST------T-HHHHHHHHHHHCSEEEESSH
T ss_pred HcCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCcc--cc----ccCCC------c-hHHHHHHHHHHhceeeCCCH
Confidence 34899999987644 455677888899998754443311 00 00000 0 00112334567999999998
Q ss_pred HhHhhccccccccccccccccccceeeecCCCCCCCceEEecCCC-CCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhh
Q 003947 460 QEIAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGA-DMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKE 538 (784)
Q Consensus 460 ~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGv-D~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~ 538 (784)
...+... ..|++ ..|+.+++|++ |...+.+ .+ . ..++
T Consensus 156 ~~~~~l~--------------------~~g~~--~~ki~vi~n~~~d~~~~~~-----~~-~--------------~~~~ 193 (376)
T 1v4v_A 156 LAKANLL--------------------KEGKR--EEGILVTGQTGVDAVLLAA-----KL-G--------------RLPE 193 (376)
T ss_dssp HHHHHHH--------------------TTTCC--GGGEEECCCHHHHHHHHHH-----HH-C--------------CCCT
T ss_pred HHHHHHH--------------------HcCCC--cceEEEECCchHHHHhhhh-----hh-h--------------HHHH
Confidence 7665211 12444 56899999964 4211100 00 0 0111
Q ss_pred hhccccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEE-eCCCCCCcccHHHHHHHHHHHHHHHhcCCCCc
Q 003947 539 HLCVLKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVV-GGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQ 617 (784)
Q Consensus 539 ~~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIV-G~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~ 617 (784)
.+ ++++++++++||+...||++.+++|+.++.+..++++++++ |+++ ...+.+++++. ..++
T Consensus 194 ~~----~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~----------~~~~~l~~~~~---~~~~ 256 (376)
T 1v4v_A 194 GL----PEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNP----------VVREAVFPVLK---GVRN 256 (376)
T ss_dssp TC----CSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCH----------HHHHHHHHHHT---TCTT
T ss_pred hc----CCCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCH----------HHHHHHHHHhc---cCCC
Confidence 11 23445678899998888999999999999877788999887 5441 12344444443 2468
Q ss_pred EEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc-CccccccccccCceEEEECCCCHHHH
Q 003947 618 FRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT-CNGGPAEIIVHGKSGFHIDPYKGDQA 696 (784)
Q Consensus 618 V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT-~~GG~~EiI~dg~~G~li~p~d~e~l 696 (784)
|+|+| .+...++..+|+. +|++|.|| + |+ ++|||+||+|||++ +.||..+++.+| +|++++ .|++++
T Consensus 257 v~~~g----~~g~~~~~~~~~~-ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~-~d~~~l 324 (376)
T 1v4v_A 257 FVLLD----PLEYGSMAALMRA-SLLLVTDS--G--GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAG-TDPEGV 324 (376)
T ss_dssp EEEEC----CCCHHHHHHHHHT-EEEEEESC--H--HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECC-SCHHHH
T ss_pred EEEEC----CCCHHHHHHHHHh-CcEEEECC--c--CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEECC-CCHHHH
Confidence 99997 4555688999995 99999998 3 44 88999999999997 678999988766 899986 499999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003947 697 TGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSG 743 (784)
Q Consensus 697 Ae~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~ 743 (784)
+++|.+ +++||+.+++|++++ +.|.|...++++.+++.
T Consensus 325 a~~i~~----ll~d~~~~~~~~~~~-----~~~~~~~~~~~i~~~i~ 362 (376)
T 1v4v_A 325 YRVVKG----LLENPEELSRMRKAK-----NPYGDGKAGLMVARGVA 362 (376)
T ss_dssp HHHHHH----HHTCHHHHHHHHHSC-----CSSCCSCHHHHHHHHHH
T ss_pred HHHHHH----HHhChHhhhhhcccC-----CCCCCChHHHHHHHHHH
Confidence 999974 557999999998643 45666666666666554
No 27
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.89 E-value=4.8e-23 Score=203.40 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=132.2
Q ss_pred CCCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHH--hcCCCCcEEEcc
Q 003947 545 DSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLID--TYKLNGQFRWIS 622 (784)
Q Consensus 545 ~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~--~l~L~~~V~flG 622 (784)
+.++++|+|+||+.+.||++.+++++.++ ++++|+|+|+++.. +.++++++ ++++.++|+|+|
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~~-----------~~l~~~~~~~~~~l~~~v~~~g 84 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSKG-----------DHAERYARKIMKIAPDNVKFLG 84 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCTT-----------STHHHHHHHHHHHSCTTEEEEE
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCccH-----------HHHHHHHHhhhcccCCcEEEeC
Confidence 56789999999999999999999999987 57999999998652 34667777 778899999999
Q ss_pred CcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHH
Q 003947 623 SQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYKGDQATGILVD 702 (784)
Q Consensus 623 ~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lAe~I~~ 702 (784)
.++.+++..+++. +|++|+||..|+||++++|||+||+|||+|+.|+..|++.++.+|+++ +.|+++++++|.+
T Consensus 85 ----~~~~~e~~~~~~~-adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~ 158 (177)
T 2f9f_A 85 ----SVSEEELIDLYSR-CKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NADVNEIIDAMKK 158 (177)
T ss_dssp ----SCCHHHHHHHHHH-CSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSCHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHh-CCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCCHHHHHHHHHH
Confidence 7778899999995 999999999999999999999999999999999999999999999999 9999999999985
Q ss_pred HHHHhcCCHHH-HHHHHHH
Q 003947 703 FFEKCKVDPGH-WDEISQG 720 (784)
Q Consensus 703 ~l~~ll~dp~~-~~~m~~~ 720 (784)
++ +|++. +++++++
T Consensus 159 l~----~~~~~~~~~~~~~ 173 (177)
T 2f9f_A 159 VS----KNPDKFKKDCFRR 173 (177)
T ss_dssp HH----HCTTTTHHHHHHH
T ss_pred HH----hCHHHHHHHHHHH
Confidence 54 57764 4444433
No 28
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.88 E-value=1.1e-22 Score=225.22 Aligned_cols=206 Identities=10% Similarity=0.048 Sum_probs=157.5
Q ss_pred HHhcccCEEEecChHhHhhccccccccccccccccccceeeecCCCCCCCceEEecCCCCCCCCCCCcHHHHhhhcchhh
Q 003947 446 FAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSE 525 (784)
Q Consensus 446 ~a~~~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~ 525 (784)
..++.+|.|++.|+..++...+ .|+ + ++.+++||. |.+.... +
T Consensus 149 ~~~~~~d~ii~~S~~~~~~l~~--------------------~g~---~-ki~vi~n~~----f~~~~~~--~------- 191 (374)
T 2xci_A 149 ILSKKFDLIIMRTQEDVEKFKT--------------------FGA---K-RVFSCGNLK----FICQKGK--G------- 191 (374)
T ss_dssp HHHTTCSEEEESCHHHHHHHHT--------------------TTC---C-SEEECCCGG----GCCCCCS--C-------
T ss_pred HHHHhCCEEEECCHHHHHHHHH--------------------cCC---C-eEEEcCCCc----cCCCcCh--h-------
Confidence 4678999999999887763221 233 3 899999973 2221100 0
Q ss_pred hHHhhcCchhhhhhhccccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHH
Q 003947 526 IEELLYSPVENKEHLCVLKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKM 605 (784)
Q Consensus 526 ~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l 605 (784)
+ .-.++++++.|+ ..||++.+++|++++.+..|+++|+|+|+|+. ..+++
T Consensus 192 ------------~------~l~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~----------~~~~l 241 (374)
T 2xci_A 192 ------------I------KLKGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIE----------NAKIF 241 (374)
T ss_dssp ------------C------CCSSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGG----------GHHHH
T ss_pred ------------h------hhcCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHH----------HHHHH
Confidence 0 012267776665 46899999999999988889999999998853 12457
Q ss_pred HHHHHhcCCC--------CcEEEccCcCCcCChhHHHHHHHccccEEEeCCC-CCCCcHHHHHHHHcCCcEEEc-Ccccc
Q 003947 606 YGLIDTYKLN--------GQFRWISSQMNRVRNGELYRYICDTKGAFVQPAL-YEAFGLTVVEAMTCGLPTFAT-CNGGP 675 (784)
Q Consensus 606 ~~li~~l~L~--------~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~-~E~fGltvlEAMA~GlPVIaT-~~GG~ 675 (784)
+++++++++. ++|.+.|.+ +++..+|+. +|++++||. .|++|++++||||||+|||++ +.+|+
T Consensus 242 ~~~~~~~gl~~~~~~~~~~~v~~~~~~------~dl~~~y~~-aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~ 314 (374)
T 2xci_A 242 EKKARDFGFKTSFFENLEGDVILVDRF------GILKELYPV-GKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKV 314 (374)
T ss_dssp HHHHHHTTCCEEETTCCCSSEEECCSS------SCHHHHGGG-EEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTS
T ss_pred HHHHHHCCCceEEecCCCCcEEEECCH------HHHHHHHHh-CCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccCh
Confidence 7888888886 568887732 478899995 999888765 577899999999999999985 78999
Q ss_pred ccccccC-ceEEEECCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC
Q 003947 676 AEIIVHG-KSGFHIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYT 730 (784)
Q Consensus 676 ~EiI~dg-~~G~li~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~yt 730 (784)
.|++.+. .+|++++++|+++++++|.+++ +| +.+++|+++|++++++++.
T Consensus 315 ~e~~~~~~~~G~l~~~~d~~~La~ai~~ll----~d-~~r~~mg~~ar~~~~~~~g 365 (374)
T 2xci_A 315 NDLKEFLEKEGAGFEVKNETELVTKLTELL----SV-KKEIKVEEKSREIKGCYLE 365 (374)
T ss_dssp HHHHHHHHHTTCEEECCSHHHHHHHHHHHH----HS-CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEeCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHhccc
Confidence 9988763 5788888999999999998554 58 8899999999999977554
No 29
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.82 E-value=6.9e-19 Score=195.02 Aligned_cols=162 Identities=13% Similarity=0.064 Sum_probs=125.5
Q ss_pred CCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcC
Q 003947 546 SSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQM 625 (784)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~ 625 (784)
+++.++++.|++. .|+.+.+.+++..+.+. ++++++++++... . +.+ -++.++|++.|
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~g~~~~----~------~~l------~~~~~~v~~~~--- 298 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAGL--DADVLVASGPSLD----V------SGL------GEVPANVRLES--- 298 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHTS--SSEEEEECCSSCC----C------TTC------CCCCTTEEEES---
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHcC--CCEEEEEECCCCC----h------hhh------ccCCCcEEEeC---
Confidence 3455678889986 78888888888887663 5677777765430 0 001 03568999999
Q ss_pred CcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCceEEEECCC--CHHHHHHH
Q 003947 626 NRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNG----GPAEIIVHGKSGFHIDPY--KGDQATGI 699 (784)
Q Consensus 626 ~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~G----G~~EiI~dg~~G~li~p~--d~e~lAe~ 699 (784)
+++ +..+++ .+|++|.++ .+.+++|||+||+|+|++..+ +..+.+.++..|++++++ |+++++++
T Consensus 299 -~~~---~~~~l~-~ad~~v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~a 369 (412)
T 3otg_A 299 -WVP---QAALLP-HVDLVVHHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGA 369 (412)
T ss_dssp -CCC---HHHHGG-GCSEEEESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHH
T ss_pred -CCC---HHHHHh-cCcEEEECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHH
Confidence 443 566777 499999875 248999999999999996554 477888888899999987 89999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003947 700 LVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSG 743 (784)
Q Consensus 700 I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~ 743 (784)
|.++ ++||+.+++|++.+++.. +.++|+.+++.+++++.
T Consensus 370 i~~l----l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 408 (412)
T 3otg_A 370 AKRL----LAEESYRAGARAVAAEIA-AMPGPDEVVRLLPGFAS 408 (412)
T ss_dssp HHHH----HHCHHHHHHHHHHHHHHH-HSCCHHHHHTTHHHHHC
T ss_pred HHHH----HhCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhc
Confidence 9754 579999999999998876 78899999999999875
No 30
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.81 E-value=2.3e-19 Score=196.09 Aligned_cols=247 Identities=12% Similarity=0.076 Sum_probs=173.6
Q ss_pred CCCceEEEEcCCCh---hHHHHHHHH--hCCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEE
Q 003947 381 QCKPDLIIGNYSDG---NIVASLLAH--KLDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFII 455 (784)
Q Consensus 381 ~~~pDIIh~~~~~~---~lva~llar--~~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~II 455 (784)
-.++|+|+.+++.. .+.+.++.+ +.++|+|+.+|++++..+. ...+ .. ..|+..+++||.||
T Consensus 72 ~~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~---------~~~~--~~--~~E~~~y~~aD~Ii 138 (339)
T 3rhz_A 72 LRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFS---------GNFY--LM--DRTIAYYNKADVVV 138 (339)
T ss_dssp CCTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCG---------GGGG--GH--HHHHHHHTTCSEEE
T ss_pred CCCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCc---------cchh--hH--HHHHHHHHHCCEEE
Confidence 45899999988764 233445554 3489999999999764321 0111 11 25788999999999
Q ss_pred ecChHhHhhccccccccccccccccccceeeecCCCCCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchh
Q 003947 456 TSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVE 535 (784)
Q Consensus 456 t~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~ 535 (784)
+.|+...+.+. ..|++ ..++.++++. |... +..
T Consensus 139 ~~S~~~~~~l~--------------------~~G~~--~~ki~~~~~~-~~~~--~~~---------------------- 171 (339)
T 3rhz_A 139 APSQKMIDKLR--------------------DFGMN--VSKTVVQGMW-DHPT--QAP---------------------- 171 (339)
T ss_dssp ESCHHHHHHHH--------------------HTTCC--CSEEEECCSC-CCCC--CCC----------------------
T ss_pred ECCHHHHHHHH--------------------HcCCC--cCceeecCCC-CccC--ccc----------------------
Confidence 99998876322 23443 4566444432 2110 100
Q ss_pred hhhhhccccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCC
Q 003947 536 NKEHLCVLKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLN 615 (784)
Q Consensus 536 ~~~~~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~ 615 (784)
.. .+.++++|+|+|++++...+. +..++++|+|+|+|+.. .+.
T Consensus 172 ----~~--~~~~~~~i~yaG~l~k~~~L~----------~l~~~~~f~ivG~G~~~---------------------~l~ 214 (339)
T 3rhz_A 172 ----MF--PAGLKREIHFPGNPERFSFVK----------EWKYDIPLKVYTWQNVE---------------------LPQ 214 (339)
T ss_dssp ----CC--CCEEEEEEEECSCTTTCGGGG----------GCCCSSCEEEEESCCCC---------------------CCT
T ss_pred ----cc--ccCCCcEEEEeCCcchhhHHH----------hCCCCCeEEEEeCCccc---------------------CcC
Confidence 00 023568899999999633322 22478999999999751 244
Q ss_pred CcEEEccCcCCcCChhHHHHHHHccccEEEeCCC-------CCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEE
Q 003947 616 GQFRWISSQMNRVRNGELYRYICDTKGAFVQPAL-------YEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHI 688 (784)
Q Consensus 616 ~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~-------~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~G~li 688 (784)
+|.|+| +++.+++..+++. +|+.+++.. ...+|.+++||||||+|||+++.|+..++|.++.+|+.+
T Consensus 215 -nV~f~G----~~~~~el~~~l~~-~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~ 288 (339)
T 3rhz_A 215 -NVHKIN----YRPDEQLLMEMSQ-GGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWIV 288 (339)
T ss_dssp -TEEEEE----CCCHHHHHHHHHT-EEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEE
T ss_pred -CEEEeC----CCCHHHHHHHHHh-CCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEe
Confidence 899999 7889999999975 666666511 135699999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003947 689 DPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLL 739 (784)
Q Consensus 689 ~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll 739 (784)
+ +.++++++|.. + +++.+++|+++|++.. ++++|..++++.+
T Consensus 289 ~--~~~e~~~~i~~----l--~~~~~~~m~~na~~~a-~~~~~~~f~k~~l 330 (339)
T 3rhz_A 289 K--DVEEAIMKVKN----V--NEDEYIELVKNVRSFN-PILRKGFFTRRLL 330 (339)
T ss_dssp S--SHHHHHHHHHH----C--CHHHHHHHHHHHHHHT-HHHHTTHHHHHHH
T ss_pred C--CHHHHHHHHHH----h--CHHHHHHHHHHHHHHH-HHhhccHHHHHHH
Confidence 6 57888888863 2 5778999999999876 5666666665554
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.78 E-value=1.3e-17 Score=183.86 Aligned_cols=345 Identities=13% Similarity=0.031 Sum_probs=202.1
Q ss_pred cceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCCCCCCCCcCcceeee
Q 003947 253 RVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLPDAVGTTCGQRVEKV 332 (784)
Q Consensus 253 ~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~~~~g~~~~~~~e~v 332 (784)
|..||+|.+ ..|||-..-.+ .++++|+++||+|. .+|... | .+.+ .
T Consensus 1 M~~~i~i~~-------------GGTgGHi~pal--------ala~~L~~~g~~V~----~vg~~~----g----~e~~-~ 46 (365)
T 3s2u_A 1 MKGNVLIMA-------------GGTGGHVFPAL--------ACAREFQARGYAVH----WLGTPR----G----IEND-L 46 (365)
T ss_dssp --CEEEEEC-------------CSSHHHHHHHH--------HHHHHHHHTTCEEE----EEECSS----S----THHH-H
T ss_pred CCCcEEEEc-------------CCCHHHHHHHH--------HHHHHHHhCCCEEE----EEECCc----h----Hhhc-h
Confidence 566888763 13678554444 67788899999998 777431 1 0000 1
Q ss_pred cCcCCeEEEEccCCCCcc-cccccccccCChhhHHHHHHHHHHHHHHHcCCCceEEEEcCCChhHHHHHHHHhCCCcEEE
Q 003947 333 YGTKYSDILRVPFRTEEG-IVRKWISRFEVWPYLETFTEDVATEIIQELQCKPDLIIGNYSDGNIVASLLAHKLDVTQCT 411 (784)
Q Consensus 333 ~~~~~v~IlrvP~~~~~~-~~~~~isr~~l~~yl~~f~~~~~~~i~~~~~~~pDIIh~~~~~~~lva~llar~~gvp~V~ 411 (784)
....|+.+..+|..+..+ ...+++ ...+..+..+ ..+.+.+.+ .+||+|++.....+..+.++++.+++|++.
T Consensus 47 v~~~g~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~~---~~PDvVi~~g~~~s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 47 VPKAGLPLHLIQVSGLRGKGLKSLV--KAPLELLKSL-FQALRVIRQ---LRPVCVLGLGGYVTGPGGLAARLNGVPLVI 120 (365)
T ss_dssp TGGGTCCEEECC----------------CHHHHHHHH-HHHHHHHHH---HCCSEEEECSSSTHHHHHHHHHHTTCCEEE
T ss_pred hhhcCCcEEEEECCCcCCCCHHHHH--HHHHHHHHHH-HHHHHHHHh---cCCCEEEEcCCcchHHHHHHHHHcCCCEEE
Confidence 111245555665433221 000000 0112222211 122333333 389999998888888888899999999884
Q ss_pred EecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHhHhhccccccccccccccccccceeeecCCC
Q 003947 412 IAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGID 491 (784)
Q Consensus 412 t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~ 491 (784)
.-.+.. + . ...++..+.|+.|.+..+....
T Consensus 121 he~n~~----~--G----------------~~nr~l~~~a~~v~~~~~~~~~---------------------------- 150 (365)
T 3s2u_A 121 HEQNAV----A--G----------------TANRSLAPIARRVCEAFPDTFP---------------------------- 150 (365)
T ss_dssp EECSSS----C--C----------------HHHHHHGGGCSEEEESSTTSSC----------------------------
T ss_pred Eecchh----h--h----------------hHHHhhccccceeeeccccccc----------------------------
Confidence 322211 0 0 0122345678887665532100
Q ss_pred CCCCceEEecCCCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhhccccCCCCCE-EEEEecccCCCChHHHHHHH
Q 003947 492 AFDPKFNIVSPGADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHLCVLKDSSKPI-LFTMARLDRVKNLTGLVEWY 570 (784)
Q Consensus 492 ~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~gll~~~~k~i-Il~vGRL~~~Kgi~~LieA~ 570 (784)
...|..++.|.+..+.+.+.. ...++ +++++. +++.|+++..+..+.+.+++
T Consensus 151 -~~~k~~~~g~pvr~~~~~~~~------------------------~~~~~--~~~~~~ilv~gGs~g~~~~~~~~~~al 203 (365)
T 3s2u_A 151 -ASDKRLTTGNPVRGELFLDAH------------------------ARAPL--TGRRVNLLVLGGSLGAEPLNKLLPEAL 203 (365)
T ss_dssp -C---CEECCCCCCGGGCCCTT------------------------SSCCC--TTSCCEEEECCTTTTCSHHHHHHHHHH
T ss_pred -CcCcEEEECCCCchhhccchh------------------------hhccc--CCCCcEEEEECCcCCccccchhhHHHH
Confidence 144677788887766543321 11222 344555 45557888877778888998
Q ss_pred HHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHccccEEEeCCCC
Q 003947 571 GKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALY 650 (784)
Q Consensus 571 ~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~ 650 (784)
..+... .++.+++++|..+ .+.+.+..++.+. ++++.|+.+ ++..+|+. +|++|.-+
T Consensus 204 ~~l~~~-~~~~vi~~~G~~~-----------~~~~~~~~~~~~~--~~~v~~f~~------dm~~~l~~-aDlvI~ra-- 260 (365)
T 3s2u_A 204 AQVPLE-IRPAIRHQAGRQH-----------AEITAERYRTVAV--EADVAPFIS------DMAAAYAW-ADLVICRA-- 260 (365)
T ss_dssp HTSCTT-TCCEEEEECCTTT-----------HHHHHHHHHHTTC--CCEEESCCS------CHHHHHHH-CSEEEECC--
T ss_pred Hhcccc-cceEEEEecCccc-----------cccccceeccccc--ccccccchh------hhhhhhcc-ceEEEecC--
Confidence 887543 3455554444322 2334444555554 567778544 57788885 99999754
Q ss_pred CCCcHHHHHHHHcCCcEEEcCcccc--------ccccccCceEEEECCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003947 651 EAFGLTVVEAMTCGLPTFATCNGGP--------AEIIVHGKSGFHIDPY--KGDQATGILVDFFEKCKVDPGHWDEISQG 720 (784)
Q Consensus 651 E~fGltvlEAMA~GlPVIaT~~GG~--------~EiI~dg~~G~li~p~--d~e~lAe~I~~~l~~ll~dp~~~~~m~~~ 720 (784)
-++|+.|+|++|+|+|....++. ++.+.+...|.+++.. +++.++++|.+ +++||+.+++|+++
T Consensus 261 --G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~----ll~d~~~~~~m~~~ 334 (365)
T 3s2u_A 261 --GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSE----VLMHPETLRSMADQ 334 (365)
T ss_dssp --CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHH----HHHCTHHHHHHHHH
T ss_pred --CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHH----HHCCHHHHHHHHHH
Confidence 37899999999999998766543 2345555589988765 47888888875 45799999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Q 003947 721 GLKRIQEKYTWKIYSERLLNLSGV 744 (784)
Q Consensus 721 a~~~v~~~ytw~~~a~~ll~ly~~ 744 (784)
+++.. .....+.+++.++++.+-
T Consensus 335 a~~~~-~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 335 ARSLA-KPEATRTVVDACLEVARG 357 (365)
T ss_dssp HHHTC-CTTHHHHHHHHHHHHC--
T ss_pred HHhcC-CccHHHHHHHHHHHHHcc
Confidence 98875 556677888888877553
No 32
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.77 E-value=8.8e-17 Score=179.61 Aligned_cols=162 Identities=12% Similarity=0.018 Sum_probs=117.5
Q ss_pred CCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEE-EEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCc
Q 003947 546 SSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNL-VVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQ 624 (784)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~L-vIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~ 624 (784)
+++++++++|++. .++.+.+.+++..+.+. +++++ +++|.+... +.+ + .+.++|.++|
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~G~~~~~-----------~~l----~--~~~~~v~~~~-- 289 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFGNL-PGWHLVLQIGRKVTP-----------AEL----G--ELPDNVEVHD-- 289 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHTTC-TTEEEEEECC---CG-----------GGG----C--SCCTTEEEES--
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHhcC-CCeEEEEEeCCCCCh-----------HHh----c--cCCCCeEEEe--
Confidence 3456788999998 56666665555555443 46787 467776431 111 1 2467899999
Q ss_pred CCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECCC--CHHHHHH
Q 003947 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGG----PAEIIVHGKSGFHIDPY--KGDQATG 698 (784)
Q Consensus 625 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG----~~EiI~dg~~G~li~p~--d~e~lAe 698 (784)
+++.. .+++ .+|++|..+- +++++|||++|+|+|++..++ ..+.+.+...|+.++++ |++++++
T Consensus 290 --~~~~~---~~l~-~ad~~v~~~G----~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ 359 (430)
T 2iyf_A 290 --WVPQL---AILR-QADLFVTHAG----AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRE 359 (430)
T ss_dssp --SCCHH---HHHT-TCSEEEECCC----HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHH
T ss_pred --cCCHH---HHhh-ccCEEEECCC----ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHH
Confidence 44443 5667 5999998752 379999999999999997765 46667777789999877 7899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003947 699 ILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSG 743 (784)
Q Consensus 699 ~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~ 743 (784)
+|.++ ++|++.++++++.+++.. +.++++.+++.++++++
T Consensus 360 ~i~~l----l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 399 (430)
T 2iyf_A 360 TALAL----VDDPEVARRLRRIQAEMA-QEGGTRRAADLIEAELP 399 (430)
T ss_dssp HHHHH----HHCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHTTSC
T ss_pred HHHHH----HcCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHhh
Confidence 99754 469999999999988876 66899999999988765
No 33
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.74 E-value=1.3e-17 Score=186.05 Aligned_cols=277 Identities=14% Similarity=0.105 Sum_probs=176.6
Q ss_pred CCceEEEEcCCCh-hHHHHHHHHhCCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChH
Q 003947 382 CKPDLIIGNYSDG-NIVASLLAHKLDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQ 460 (784)
Q Consensus 382 ~~pDIIh~~~~~~-~lva~llar~~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~ 460 (784)
.+||+||++.... .+.+.++++..++|++...+++.. + +.+ ..+... ......-+.+|.+++.|+.
T Consensus 110 ~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~rs--~---~~~-~~~~~~-------~~r~~~~~~a~~~~~~se~ 176 (396)
T 3dzc_A 110 EQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLRT--G---NIY-SPWPEE-------GNRKLTAALTQYHFAPTDT 176 (396)
T ss_dssp HCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCCC--S---CTT-SSTTHH-------HHHHHHHHTCSEEEESSHH
T ss_pred cCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCccc--c---ccc-cCCcHH-------HHHHHHHHhcCEEECCCHH
Confidence 3899999987665 466678899999997654433311 1 000 000000 0111234678999999987
Q ss_pred hHhhccccccccccccccccccceeeecCCCCCCCceEEecCC-CCCCCCCCCcHHH-HhhhcchhhhHHhhcCchhhhh
Q 003947 461 EIAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPG-ADMTIYFPYMEEK-RRLKHFHSEIEELLYSPVENKE 538 (784)
Q Consensus 461 ~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnG-vD~~~f~p~~~~~-~rl~~~~~~~~~~l~~~~~~~~ 538 (784)
..+.. ...|++ +.++.+++|. +|...+.+..... ..+ ..+.++
T Consensus 177 ~~~~l--------------------~~~G~~--~~ki~vvGn~~~d~~~~~~~~~~~~~~~-------------~~~~r~ 221 (396)
T 3dzc_A 177 SRANL--------------------LQENYN--AENIFVTGNTVIDALLAVREKIHTDMDL-------------QATLES 221 (396)
T ss_dssp HHHHH--------------------HHTTCC--GGGEEECCCHHHHHHHHHHHHHHHCHHH-------------HHHHHH
T ss_pred HHHHH--------------------HHcCCC--cCcEEEECCcHHHHHHHhhhhcccchhh-------------HHHHHH
Confidence 66521 123554 6789999884 4432211110000 000 012345
Q ss_pred hhccccCCCCCE-EEEEeccc-CCCChHHHHHHHHHhHccCCCeEEEEE-eCCCCCCcccHHHHHHHHHHHHHHHhcCCC
Q 003947 539 HLCVLKDSSKPI-LFTMARLD-RVKNLTGLVEWYGKNAKLRELVNLVVV-GGDRRKESKDLEEQAEMKKMYGLIDTYKLN 615 (784)
Q Consensus 539 ~~gll~~~~k~i-Il~vGRL~-~~Kgi~~LieA~~~l~~~~~~v~LvIV-G~g~~~~s~d~ee~~~~~~l~~li~~l~L~ 615 (784)
++|++ ++++++ +++.+|.. ..|+++.+++|+.++.+.+|++++++. |.++ ...+.++++ ++..
T Consensus 222 ~lg~l-~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~----------~~~~~l~~~---~~~~ 287 (396)
T 3dzc_A 222 QFPML-DASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNP----------NVREPVNKL---LKGV 287 (396)
T ss_dssp TCTTC-CTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCH----------HHHHHHHHH---TTTC
T ss_pred HhCcc-CCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCCh----------HHHHHHHHH---HcCC
Confidence 56622 344455 44555654 347899999999999887889999986 4331 112222222 3455
Q ss_pred CcEEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc-CccccccccccCceEEEECCCCHH
Q 003947 616 GQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT-CNGGPAEIIVHGKSGFHIDPYKGD 694 (784)
Q Consensus 616 ~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT-~~GG~~EiI~dg~~G~li~p~d~e 694 (784)
++|.+++ .+...++..+|+. +|++|.+| | |++ +|||+||+|+|++ +.++..|++++| +++++++ |++
T Consensus 288 ~~v~~~~----~lg~~~~~~l~~~-ad~vv~~S---G-g~~-~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv~~-d~~ 355 (396)
T 3dzc_A 288 SNIVLIE----PQQYLPFVYLMDR-AHIILTDS---G-GIQ-EEAPSLGKPVLVMRETTERPEAVAAG-TVKLVGT-NQQ 355 (396)
T ss_dssp TTEEEEC----CCCHHHHHHHHHH-CSEEEESC---S-GGG-TTGGGGTCCEEECCSSCSCHHHHHHT-SEEECTT-CHH
T ss_pred CCEEEeC----CCCHHHHHHHHHh-cCEEEECC---c-cHH-HHHHHcCCCEEEccCCCcchHHHHcC-ceEEcCC-CHH
Confidence 7899987 5666788888985 99999998 3 444 8999999999999 888888999888 5777764 899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003947 695 QATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNL 741 (784)
Q Consensus 695 ~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~l 741 (784)
++++++.+ +++||+.+++|++++. .|.....++++.++
T Consensus 356 ~l~~ai~~----ll~d~~~~~~m~~~~~-----~~~~~~aa~ri~~~ 393 (396)
T 3dzc_A 356 QICDALSL----LLTDPQAYQAMSQAHN-----PYGDGKACQRIADI 393 (396)
T ss_dssp HHHHHHHH----HHHCHHHHHHHHTSCC-----TTCCSCHHHHHHHH
T ss_pred HHHHHHHH----HHcCHHHHHHHhhccC-----CCcCChHHHHHHHH
Confidence 99999874 4579999999987653 35555555555544
No 34
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.73 E-value=1.5e-17 Score=183.43 Aligned_cols=162 Identities=13% Similarity=0.007 Sum_probs=123.0
Q ss_pred CCCEEEEEecccCCCCh-HHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcC
Q 003947 547 SKPILFTMARLDRVKNL-TGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQM 625 (784)
Q Consensus 547 ~k~iIl~vGRL~~~Kgi-~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~ 625 (784)
.+.+++++|++...|+. ..+++++.+. +..|+++++++|++... +.+ -++.++|++.|
T Consensus 218 ~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~~-----------~~l------~~~~~~v~~~~--- 276 (391)
T 3tsa_A 218 ARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEHR-----------ALL------TDLPDNARIAE--- 276 (391)
T ss_dssp SEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGGG-----------GGC------TTCCTTEEECC---
T ss_pred CCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcch-----------hhc------ccCCCCEEEec---
Confidence 44567778998775555 7777777666 66678999999987430 111 13568899999
Q ss_pred CcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc----CccccccccccCceEEEECC----CCHHHHH
Q 003947 626 NRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT----CNGGPAEIIVHGKSGFHIDP----YKGDQAT 697 (784)
Q Consensus 626 ~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT----~~GG~~EiI~dg~~G~li~p----~d~e~lA 697 (784)
+++..++. + ++|++|.. +-+.+++|||++|+|+|+. +..+..+.+.+...|..+++ .|+++++
T Consensus 277 -~~~~~~ll---~-~ad~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~ 347 (391)
T 3tsa_A 277 -SVPLNLFL---R-TCELVICA----GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFT 347 (391)
T ss_dssp -SCCGGGTG---G-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHH
T ss_pred -cCCHHHHH---h-hCCEEEeC----CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHH
Confidence 45555554 4 69999975 4457999999999999994 55567778888889999998 6888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003947 698 GILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSG 743 (784)
Q Consensus 698 e~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~ 743 (784)
+++. ++++||+.+++|++.+++.. +..+|+..++.++++..
T Consensus 348 ~ai~----~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 348 DSIA----TVLGDTGFAAAAIKLSDEIT-AMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHH----HHHTCTHHHHHHHHHHHHHH-TSCCHHHHHHHHHHC--
T ss_pred HHHH----HHHcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 8887 45689999999998887775 88999999998887643
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.72 E-value=1.1e-17 Score=185.18 Aligned_cols=156 Identities=11% Similarity=-0.005 Sum_probs=104.3
Q ss_pred CCCCEEEEEecccCCC----------ChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCC
Q 003947 546 SSKPILFTMARLDRVK----------NLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLN 615 (784)
Q Consensus 546 ~~k~iIl~vGRL~~~K----------gi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~ 615 (784)
+.+++++++|++...| .+..+++++.++ ++++++++++.+ .+.+. .+.
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~-----------~~~l~------~~~ 283 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-----GFEVVVAVSDKL-----------AQTLQ------PLP 283 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGGG-----TCEEEECCCC-------------------------CC
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-----CCEEEEEeCCcc-----------hhhhc------cCC
Confidence 3456788899997555 345555554432 588999888743 11111 356
Q ss_pred CcEEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEE----cCccccccccccCceEEEECCC
Q 003947 616 GQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFA----TCNGGPAEIIVHGKSGFHIDPY 691 (784)
Q Consensus 616 ~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIa----T~~GG~~EiI~dg~~G~li~p~ 691 (784)
++|++.| +++ +..+++ .+|++|.. +-+.+++|||+||+|+|+ ++..+..+.+.+...|+++++.
T Consensus 284 ~~v~~~~----~~~---~~~ll~-~ad~~v~~----gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~ 351 (398)
T 4fzr_A 284 EGVLAAG----QFP---LSAIMP-ACDVVVHH----GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWE 351 (398)
T ss_dssp TTEEEES----CCC---HHHHGG-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC--
T ss_pred CcEEEeC----cCC---HHHHHh-hCCEEEec----CCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcc
Confidence 8999999 454 345555 59999964 446899999999999999 4555778888888899999877
Q ss_pred --CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003947 692 --KGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLN 740 (784)
Q Consensus 692 --d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ 740 (784)
|+++++++|.+ +++||+.+++|++.+++.. +..+|+.+++.+++
T Consensus 352 ~~~~~~l~~ai~~----ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 352 QAGVESVLAACAR----IRDDSSYVGNARRLAAEMA-TLPTPADIVRLIEQ 397 (398)
T ss_dssp -----CHHHHHHH----HHHCTHHHHHHHHHHHHHT-TSCCHHHHHHHHTC
T ss_pred cCCHHHHHHHHHH----HHhCHHHHHHHHHHHHHHH-cCCCHHHHHHHHhc
Confidence 67788888874 4579999999999888876 78999999887653
No 36
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.71 E-value=7.3e-17 Score=180.42 Aligned_cols=274 Identities=14% Similarity=0.085 Sum_probs=175.1
Q ss_pred CCceEEEEcCCCh-hHHHHHHHHhCCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChH
Q 003947 382 CKPDLIIGNYSDG-NIVASLLAHKLDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQ 460 (784)
Q Consensus 382 ~~pDIIh~~~~~~-~lva~llar~~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~ 460 (784)
.+||+||++.... .+.+.+++++.++|++....++.. + +.++ .+... ......-+.+|.+++.|+.
T Consensus 113 ~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~aglrs--~---~~~~-~~p~~-------~~r~~~~~~a~~~~~~se~ 179 (403)
T 3ot5_A 113 ENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGLRT--W---NKYS-PFPEE-------MNRQLTGVMADIHFSPTKQ 179 (403)
T ss_dssp HCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCCC--S---CTTS-STTHH-------HHHHHHHHHCSEEEESSHH
T ss_pred cCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCccc--c---cccc-CCcHH-------HHHHHHHHhcCEEECCCHH
Confidence 3999999987654 556678889999997644333211 0 0000 00000 0111233458999999987
Q ss_pred hHhhccccccccccccccccccceeeecCCCCCCCceEEecC-CCCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhh
Q 003947 461 EIAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSP-GADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEH 539 (784)
Q Consensus 461 ~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpn-GvD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~ 539 (784)
..+.. ...|++ +.++.+++| ++|...+.+.... ..+.++.
T Consensus 180 ~~~~l--------------------~~~Gi~--~~~i~vvGn~~~D~~~~~~~~~~-----------------~~~~~~~ 220 (403)
T 3ot5_A 180 AKENL--------------------LAEGKD--PATIFVTGNTAIDALKTTVQKDY-----------------HHPILEN 220 (403)
T ss_dssp HHHHH--------------------HHTTCC--GGGEEECCCHHHHHHHHHSCTTC-----------------CCHHHHS
T ss_pred HHHHH--------------------HHcCCC--cccEEEeCCchHHHHHhhhhhhc-----------------chHHHHh
Confidence 66521 123554 678999987 4554322221100 0011111
Q ss_pred hccccCCCCCEEEEEecccC-CCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcE
Q 003947 540 LCVLKDSSKPILFTMARLDR-VKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQF 618 (784)
Q Consensus 540 ~gll~~~~k~iIl~vGRL~~-~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V 618 (784)
+ ++++.++++.||... .|++..+++|+.++.+.+++++++++++..+ ...+.+++. ++..++|
T Consensus 221 l----~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~---------~~~~~l~~~---~~~~~~v 284 (403)
T 3ot5_A 221 L----GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNP---------AVREKAMAI---LGGHERI 284 (403)
T ss_dssp C----TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCH---------HHHHHHHHH---HTTCTTE
T ss_pred c----cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCH---------HHHHHHHHH---hCCCCCE
Confidence 1 223345666777643 4789999999999988788999998853211 111222222 3445789
Q ss_pred EEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc-CccccccccccCceEEEECCCCHHHHH
Q 003947 619 RWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT-CNGGPAEIIVHGKSGFHIDPYKGDQAT 697 (784)
Q Consensus 619 ~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT-~~GG~~EiI~dg~~G~li~p~d~e~lA 697 (784)
.++| .+...++..+++. +|++|.+| |...+|||+||+|+|++ +.|+..|.++.| +|+++++ |+++++
T Consensus 285 ~l~~----~l~~~~~~~l~~~-ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d~~~l~ 352 (403)
T 3ot5_A 285 HLIE----PLDAIDFHNFLRK-SYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGT-NKENLI 352 (403)
T ss_dssp EEEC----CCCHHHHHHHHHH-EEEEEECC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCS-CHHHHH
T ss_pred EEeC----CCCHHHHHHHHHh-cCEEEECC-----ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCC-CHHHHH
Confidence 9998 6666789999995 99999887 44448999999999999 788888988777 8999876 899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003947 698 GILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLN 740 (784)
Q Consensus 698 e~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ 740 (784)
+++.+ +++|++.+++|++++..+. ...+++++++.+.+
T Consensus 353 ~ai~~----ll~~~~~~~~m~~~~~~~g-~~~aa~rI~~~l~~ 390 (403)
T 3ot5_A 353 KEALD----LLDNKESHDKMAQAANPYG-DGFAANRILAAIKS 390 (403)
T ss_dssp HHHHH----HHHCHHHHHHHHHSCCTTC-CSCHHHHHHHHHHH
T ss_pred HHHHH----HHcCHHHHHHHHhhcCccc-CCcHHHHHHHHHHH
Confidence 99975 4579999999987654432 34445555554444
No 37
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.69 E-value=4.3e-16 Score=172.55 Aligned_cols=157 Identities=14% Similarity=0.075 Sum_probs=117.0
Q ss_pred CCCCEEEEEecccCC-CChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCc
Q 003947 546 SSKPILFTMARLDRV-KNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQ 624 (784)
Q Consensus 546 ~~k~iIl~vGRL~~~-Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~ 624 (784)
+.+++++++|++... ++...+.+++..+.+. +++++++|++.+. +.+ -++.++|++.|
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~g~~~~-----------~~l------~~~~~~v~~~~-- 289 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGEV--DADFVLALGDLDI-----------SPL------GTLPRNVRAVG-- 289 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS--SSEEEEECTTSCC-----------GGG------CSCCTTEEEES--
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHcC--CCEEEEEECCcCh-----------hhh------ccCCCcEEEEc--
Confidence 345678889999654 4666666666666553 6899999988541 011 13578999999
Q ss_pred CCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEE----cCccccc--cccccCceEEEECCC--CHHHH
Q 003947 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFA----TCNGGPA--EIIVHGKSGFHIDPY--KGDQA 696 (784)
Q Consensus 625 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIa----T~~GG~~--EiI~dg~~G~li~p~--d~e~l 696 (784)
+++.. .+++ .+|++|.. +-+.+++|||++|+|+|+ .+.++.. +.+++...|+.+++. +.+.+
T Consensus 290 --~~~~~---~ll~-~ad~~v~~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l 359 (398)
T 3oti_A 290 --WTPLH---TLLR-TCTAVVHH----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLL 359 (398)
T ss_dssp --SCCHH---HHHT-TCSEEEEC----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHH
T ss_pred --cCCHH---HHHh-hCCEEEEC----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHH
Confidence 44444 4555 59999975 445799999999999999 5667788 899888899999876 45555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003947 697 TGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLS 742 (784)
Q Consensus 697 Ae~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly 742 (784)
+ ++++||+++++|++.+.+.. +..+|+.+++.++++.
T Consensus 360 ~--------~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 360 R--------RLIGDESLRTAAREVREEMV-ALPTPAETVRRIVERI 396 (398)
T ss_dssp H--------HHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred H--------HHHcCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 4 23469999999998888765 8899999999998875
No 38
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.69 E-value=3.3e-15 Score=164.40 Aligned_cols=161 Identities=11% Similarity=0.048 Sum_probs=113.4
Q ss_pred CCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEE-EeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCc
Q 003947 546 SSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVV-VGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQ 624 (784)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvI-VG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~ 624 (784)
+.+.++++.|+....++ +.+.+++..+.+. + +++++ +|++.+. +.+ + .+.++|++.|
T Consensus 230 ~~~~v~v~~G~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~g~~~~~-----------~~~----~--~~~~~v~~~~-- 287 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEHP-EFFRACAQAFADT-P-WHVVMAIGGFLDP-----------AVL----G--PLPPNVEAHQ-- 287 (402)
T ss_dssp TCCEEEEECCSCSSCCH-HHHHHHHHHHTTS-S-CEEEEECCTTSCG-----------GGG----C--SCCTTEEEES--
T ss_pred CCCEEEEECCCCCcchH-HHHHHHHHHHhcC-C-cEEEEEeCCcCCh-----------hhh----C--CCCCcEEEec--
Confidence 34567788999876552 3344444444332 2 66666 4544320 011 1 2567899998
Q ss_pred CCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc-----CccccccccccCceEEEECCC--CHHHHH
Q 003947 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT-----CNGGPAEIIVHGKSGFHIDPY--KGDQAT 697 (784)
Q Consensus 625 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT-----~~GG~~EiI~dg~~G~li~p~--d~e~lA 697 (784)
+++.. .+++ .+|++|..+- ..|++|||++|+|+|+. +..+..+.+.+...|..++++ ++++++
T Consensus 288 --~~~~~---~ll~-~ad~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~ 357 (402)
T 3ia7_A 288 --WIPFH---SVLA-HARACLTHGT----TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIR 357 (402)
T ss_dssp --CCCHH---HHHT-TEEEEEECCC----HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHH
T ss_pred --CCCHH---HHHh-hCCEEEECCC----HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHH
Confidence 44443 6666 4999998752 37899999999999954 445677788888899999876 788888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003947 698 GILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSG 743 (784)
Q Consensus 698 e~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~ 743 (784)
+++.+ +++||+.++++++.+.+.. +..+++..++.++++++
T Consensus 358 ~~~~~----ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 398 (402)
T 3ia7_A 358 EAVER----LAADSAVRERVRRMQRDIL-SSGGPARAADEVEAYLG 398 (402)
T ss_dssp HHHHH----HHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHH----HHcCHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHh
Confidence 88874 4579999999988887765 77899999999988764
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.64 E-value=4.4e-14 Score=156.81 Aligned_cols=161 Identities=11% Similarity=-0.023 Sum_probs=111.8
Q ss_pred CCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEE-eCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCc
Q 003947 546 SSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVV-GGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQ 624 (784)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIV-G~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~ 624 (784)
+.+.++++.|++...++ ..+..++..+.+. + ++++++ |.+.+. +.+ -.+.++|++.|
T Consensus 246 ~~~~v~v~~Gs~~~~~~-~~~~~~~~al~~~-~-~~~v~~~g~~~~~-----------~~l------~~~~~~v~~~~-- 303 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRP-GFFRDCARAFDGQ-P-WHVVMTLGGQVDP-----------AAL------GDLPPNVEAHR-- 303 (415)
T ss_dssp CCCEEEEECTTTSCCCH-HHHHHHHHHHTTS-S-CEEEEECTTTSCG-----------GGG------CCCCTTEEEES--
T ss_pred CCCEEEEECCCCCCChH-HHHHHHHHHHhcC-C-cEEEEEeCCCCCh-----------HHh------cCCCCcEEEEe--
Confidence 34566778898865432 3333333334332 3 777774 444320 011 13567899998
Q ss_pred CCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc----CccccccccccCceEEEECCC--CHHHHHH
Q 003947 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT----CNGGPAEIIVHGKSGFHIDPY--KGDQATG 698 (784)
Q Consensus 625 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT----~~GG~~EiI~dg~~G~li~p~--d~e~lAe 698 (784)
+++.. .+++ .+|++|..+- ..|++|||++|+|+|+. +.....+.+.+...|..++++ +++++++
T Consensus 304 --~~~~~---~ll~-~ad~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~ 373 (415)
T 3rsc_A 304 --WVPHV---KVLE-QATVCVTHGG----MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLA 373 (415)
T ss_dssp --CCCHH---HHHH-HEEEEEESCC----HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHH
T ss_pred --cCCHH---HHHh-hCCEEEECCc----HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHH
Confidence 44444 5566 4999998752 36899999999999994 445567777777789999876 7888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003947 699 ILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSG 743 (784)
Q Consensus 699 ~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~ 743 (784)
+|. ++++||+.++++++.+.+.. +...++..++.+++++.
T Consensus 374 ~i~----~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 374 AVG----AVAADPALLARVEAMRGHVR-RAGGAARAADAVEAYLA 413 (415)
T ss_dssp HHH----HHHTCHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHH
T ss_pred HHH----HHHcCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhh
Confidence 887 55689999999988777765 77899999998888764
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.60 E-value=3.6e-14 Score=155.95 Aligned_cols=156 Identities=15% Similarity=0.070 Sum_probs=112.2
Q ss_pred CCCEEEEEecccCC-------CChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEE
Q 003947 547 SKPILFTMARLDRV-------KNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFR 619 (784)
Q Consensus 547 ~k~iIl~vGRL~~~-------Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~ 619 (784)
...++++.|++... +.+..+++++.++ ++++++++++.+ .+.+. . ++++|.
T Consensus 210 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~-----------~~~l~----~--~~~~v~ 267 (384)
T 2p6p_A 210 RQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-----DVELIVAAPDTV-----------AEALR----A--EVPQAR 267 (384)
T ss_dssp SCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-----TCEEEEECCHHH-----------HHHHH----H--HCTTSE
T ss_pred CCEEEEECCCCCccccccccHHHHHHHHHHHhcC-----CcEEEEEeCCCC-----------HHhhC----C--CCCceE
Confidence 34578899999875 5667777776543 578888776411 12222 1 356889
Q ss_pred EccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECCC--CH
Q 003947 620 WISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGG----PAEIIVHGKSGFHIDPY--KG 693 (784)
Q Consensus 620 flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG----~~EiI~dg~~G~li~p~--d~ 693 (784)
+ | +++..+ +++ ++|+||..+ -+.+++|||++|+|+|++..++ ..+.+.+...|+.+++. +.
T Consensus 268 ~-~----~~~~~~---~l~-~~d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~ 334 (384)
T 2p6p_A 268 V-G----WTPLDV---VAP-TCDLLVHHA----GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDST 334 (384)
T ss_dssp E-E----CCCHHH---HGG-GCSEEEECS----CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCH
T ss_pred E-c----CCCHHH---HHh-hCCEEEeCC----cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCH
Confidence 9 9 555444 455 599999873 3569999999999999997654 66767777789999875 68
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003947 694 DQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLS 742 (784)
Q Consensus 694 e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly 742 (784)
++++++|.++ +.||++++++++.+.+.. ..-.-+..++.+.++.
T Consensus 335 ~~l~~~i~~l----l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 335 EAIADSCQEL----QAKDTYARRAQDLSREIS-GMPLPATVVTALEQLA 378 (384)
T ss_dssp HHHHHHHHHH----HHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HcCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 8888888754 469999999988877665 5557777777776654
No 41
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.48 E-value=5.7e-13 Score=149.81 Aligned_cols=157 Identities=14% Similarity=0.052 Sum_probs=114.5
Q ss_pred CCEEEEEecccCC-----CChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEcc
Q 003947 548 KPILFTMARLDRV-----KNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWIS 622 (784)
Q Consensus 548 k~iIl~vGRL~~~-----Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG 622 (784)
..++++.|++... |.+..++++++.+ ++++++++++... +.+ + +++++|++.|
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~-----------~~l----~--~~~~~v~~~~ 325 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV-----DAEIIATFDAQQL-----------EGV----A--NIPDNVRTVG 325 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS-----SSEEEECCCTTTT-----------SSC----S--SCCSSEEECC
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC-----CCEEEEEECCcch-----------hhh----c--cCCCCEEEec
Confidence 4578889998753 8888888888653 5788888776431 001 1 3567899998
Q ss_pred CcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECCC--CHHHH
Q 003947 623 SQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGG----PAEIIVHGKSGFHIDPY--KGDQA 696 (784)
Q Consensus 623 ~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG----~~EiI~dg~~G~li~p~--d~e~l 696 (784)
+++..++ +. ++|++|.. +-+.|+.|||++|+|+|+...++ .++.+.+...|+.+++. +++++
T Consensus 326 ----~~~~~~l---l~-~ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l 393 (441)
T 2yjn_A 326 ----FVPMHAL---LP-TCAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQL 393 (441)
T ss_dssp ----SCCHHHH---GG-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHH
T ss_pred ----CCCHHHH---Hh-hCCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHH
Confidence 5555444 45 59999985 33579999999999999997743 56667777789999876 78888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003947 697 TGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSG 743 (784)
Q Consensus 697 Ae~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~ 743 (784)
+++|.++ ++|+++++++++.+.+.. +...++.+++.+++++.
T Consensus 394 ~~~i~~l----l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 394 RESVKRV----LDDPAHRAGAARMRDDML-AEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHH----HHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHH
T ss_pred HHHHHHH----hcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 8888754 469999999988887765 78899999999888754
No 42
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.46 E-value=1.8e-13 Score=152.02 Aligned_cols=272 Identities=11% Similarity=0.038 Sum_probs=166.8
Q ss_pred CCceEEEEcCCChhHHHHHHHHhCCCcEEEEecCCcccCCCCCcchhhhccccccccchhhhhHHHhcccCEEEecChHh
Q 003947 382 CKPDLIIGNYSDGNIVASLLAHKLDVTQCTIAHALELTKYPDSDINWKKLDDKYHFSCQFTADLFAMNRTDFIITSTFQE 461 (784)
Q Consensus 382 ~~pDIIh~~~~~~~lva~llar~~gvp~V~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~ 461 (784)
.+||+|+++.......+.++|++.++|++..-.++.. .+..+. +. ......-..+|.+++.|+..
T Consensus 93 ~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eaglrs-----~~~~~p--ee--------~nR~~~~~~a~~~~~~te~~ 157 (385)
T 4hwg_A 93 EKPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGNRC-----FDQRVP--EE--------INRKIIDHISDVNITLTEHA 157 (385)
T ss_dssp HCCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCCCC-----SCTTST--HH--------HHHHHHHHHCSEEEESSHHH
T ss_pred cCCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCCcc-----ccccCc--HH--------HHHHHHHhhhceeecCCHHH
Confidence 3899999987654333377888999997644433311 000000 00 01112335689999999876
Q ss_pred HhhccccccccccccccccccceeeecCCCCCCCceEEecCC-CCCCCCCCCcHHHHhhhcchhhhHHhhcCchhhhhhh
Q 003947 462 IAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPG-ADMTIYFPYMEEKRRLKHFHSEIEELLYSPVENKEHL 540 (784)
Q Consensus 462 ~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnG-vD~~~f~p~~~~~~rl~~~~~~~~~~l~~~~~~~~~~ 540 (784)
.+.. ...|++ +.++.++.|. +|...+.. ... +..+.++++
T Consensus 158 ~~~l--------------------~~~G~~--~~~I~vtGnp~~D~~~~~~--~~~---------------~~~~~~~~l 198 (385)
T 4hwg_A 158 RRYL--------------------IAEGLP--AELTFKSGSHMPEVLDRFM--PKI---------------LKSDILDKL 198 (385)
T ss_dssp HHHH--------------------HHTTCC--GGGEEECCCSHHHHHHHHH--HHH---------------HHCCHHHHT
T ss_pred HHHH--------------------HHcCCC--cCcEEEECCchHHHHHHhh--hhc---------------chhHHHHHc
Confidence 6521 123554 6789999873 34211100 000 012345667
Q ss_pred ccccCCCCCEEEEEeccc---CCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhc-C-C-
Q 003947 541 CVLKDSSKPILFTMARLD---RVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTY-K-L- 614 (784)
Q Consensus 541 gll~~~~k~iIl~vGRL~---~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l-~-L- 614 (784)
|+ ++++.++++.+|.. ..|++..+++|+.++.+.. ++.+++..+. .+.+.++++ + +
T Consensus 199 gl--~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~-~~~vv~p~~p---------------~~~~~l~~~~~~~~ 260 (385)
T 4hwg_A 199 SL--TPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY-NFLIIFSTHP---------------RTKKRLEDLEGFKE 260 (385)
T ss_dssp TC--CTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH-CCEEEEEECH---------------HHHHHHHTSGGGGG
T ss_pred CC--CcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC-CeEEEEECCh---------------HHHHHHHHHHHHhc
Confidence 76 44445566666643 4478999999999987644 6777775531 134445554 3 2
Q ss_pred -CCcEEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcc-ccccccccCceEEEECCCC
Q 003947 615 -NGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNG-GPAEIIVHGKSGFHIDPYK 692 (784)
Q Consensus 615 -~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~G-G~~EiI~dg~~G~li~p~d 692 (784)
.++|.+++ .+...++..+++. +|+++.+| |....||+++|+|+|+.+.. +..|.+..| ++.++++ |
T Consensus 261 ~~~~v~l~~----~lg~~~~~~l~~~-adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~~-d 328 (385)
T 4hwg_A 261 LGDKIRFLP----AFSFTDYVKLQMN-AFCILSDS-----GTITEEASILNLPALNIREAHERPEGMDAG-TLIMSGF-K 328 (385)
T ss_dssp TGGGEEECC----CCCHHHHHHHHHH-CSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEECCS-S
T ss_pred CCCCEEEEc----CCCHHHHHHHHHh-CcEEEECC-----ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEcCC-C
Confidence 46899987 5666788888885 99999877 55679999999999998554 357777777 6777754 8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003947 693 GDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNL 741 (784)
Q Consensus 693 ~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~l 741 (784)
.+++++++. .+++|+..+++|++++..++-...+-+++++.+.+.
T Consensus 329 ~~~i~~ai~----~ll~d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~~~ 373 (385)
T 4hwg_A 329 AERVLQAVK----TITEEHDNNKRTQGLVPDYNEAGLVSKKILRIVLSY 373 (385)
T ss_dssp HHHHHHHHH----HHHTTCBTTBCCSCCCHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHhChHHHHHhhccCCCCCCCChHHHHHHHHHHHH
Confidence 999998887 455788777666654443201233444445444443
No 43
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.44 E-value=3.7e-13 Score=158.45 Aligned_cols=332 Identities=12% Similarity=0.019 Sum_probs=206.2
Q ss_pred CceEEEEcCCChhHHHH-HHHHh--------------CCCcEEEEecCCcccCC---CCCc--------------chhhh
Q 003947 383 KPDLIIGNYSDGNIVAS-LLAHK--------------LDVTQCTIAHALELTKY---PDSD--------------INWKK 430 (784)
Q Consensus 383 ~pDIIh~~~~~~~lva~-llar~--------------~gvp~V~t~H~l~~~k~---~~s~--------------~~~~~ 430 (784)
+||+||+|.++++++.. ++... .+.++++|.|++.+.-. +..- +.+.-
T Consensus 289 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~~ 368 (796)
T 2c4m_A 289 EFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQIFQQLFWRVWEIIAEIDRRF 368 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCHHHHHHHhHHHHHHHcCcCHHH
Confidence 69999999999877555 33221 24578999999865331 1000 00000
Q ss_pred cc-------------c-cccccchhhhhHHHhcccCEEEecChHhHhhcccc-ccccccccccccccceeeecCCCCCCC
Q 003947 431 LD-------------D-KYHFSCQFTADLFAMNRTDFIITSTFQEIAGSKDT-VGQYESHTAFSLPGLYRVVNGIDAFDP 495 (784)
Q Consensus 431 ~~-------------~-~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~-vgqYe~~~~f~~p~l~~~~~gi~~f~~ 495 (784)
+. . ....-.++..-..++..|+.|.+||+.-.+.++.. .+ ++++ ..+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~~f~-----------~~~~------~~p~ 431 (796)
T 2c4m_A 369 RLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAETLA-----------DWYA------LWPE 431 (796)
T ss_dssp HHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHTTTH-----------HHHH------HCGG
T ss_pred HHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhhhhh-----------hHHH------cCcc
Confidence 00 0 00000122223467899999999998777655532 11 1111 2367
Q ss_pred ceEEecCCCCCCCC----CCCcHHH--Hhhh------------cchh---------hh-HHhhcCchh----hhhhhccc
Q 003947 496 KFNIVSPGADMTIY----FPYMEEK--RRLK------------HFHS---------EI-EELLYSPVE----NKEHLCVL 543 (784)
Q Consensus 496 k~~VIpnGvD~~~f----~p~~~~~--~rl~------------~~~~---------~~-~~~l~~~~~----~~~~~gll 543 (784)
|++-|.||||...| .|..+.- ..+. ++.+ ++ +...-++.. .+++.|+.
T Consensus 432 kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~ 511 (796)
T 2c4m_A 432 KFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIE 511 (796)
T ss_dssp GEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 89999999999998 3432111 0000 0000 00 111122333 35677887
Q ss_pred cCCCCCEEEEEecccCCCChHH-HHHHHHHhHc--cC-----CCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHH----h
Q 003947 544 KDSSKPILFTMARLDRVKNLTG-LVEWYGKNAK--LR-----ELVNLVVVGGDRRKESKDLEEQAEMKKMYGLID----T 611 (784)
Q Consensus 544 ~~~~k~iIl~vGRL~~~Kgi~~-LieA~~~l~~--~~-----~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~----~ 611 (784)
.+++.+.++++.|+...|+.+. ++..+.++.+ .. ..+.+++.|.+.+. +...+..++.+..+++ .
T Consensus 512 vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~---y~~aK~iIk~i~~va~~in~d 588 (796)
T 2c4m_A 512 IDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPG---YVRAKAIIKLINSIADLVNND 588 (796)
T ss_dssp CCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTT---CHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHh---HHHHHHHHHHHHHHHHHhccc
Confidence 7889999999999999999999 7888777653 22 35899999988653 3344445555555555 2
Q ss_pred cCCCC--cEEEccCcCCcCChhHHHHHHHccccEEEeCCC--CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CceE
Q 003947 612 YKLNG--QFRWISSQMNRVRNGELYRYICDTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCNGGPAEIIVH--GKSG 685 (784)
Q Consensus 612 l~L~~--~V~flG~~~~~v~~~el~~~la~aadvfV~PS~--~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~d--g~~G 685 (784)
...++ +|.|+. ..+. .+.+.+..++|++.+||. +|++|+.-+=||..|.++|+|-.|...|+.++ ..||
T Consensus 589 p~~~~~lKVvFl~----nY~v-slA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~Ng 663 (796)
T 2c4m_A 589 PEVSPLLKVVFVE----NYNV-SPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENA 663 (796)
T ss_dssp TTTTTTEEEEEET----TCCH-HHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGGS
T ss_pred cccCCceEEEEEC----CCCH-HHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCcE
Confidence 34567 788885 3333 555555557999999999 99999999999999999999999999888765 4699
Q ss_pred EEECC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 003947 686 FHIDP--YKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGVY 745 (784)
Q Consensus 686 ~li~p--~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~~ 745 (784)
|+|.. .++.++-.. .+..+....+| .++++-+++.. ..|+|..- +.+..+|...
T Consensus 664 F~FG~~~~ev~~l~~~-y~a~~~y~~~~-~~~~vvd~~~~---g~fs~~~~-~~y~~Ly~~L 719 (796)
T 2c4m_A 664 YIFGARVEELPALRES-YKPYELYETVP-GLKRALDALDN---GTLNDNNS-GLFYDLKHSL 719 (796)
T ss_dssp EEESCCTTTHHHHHHT-CCHHHHHHHST-THHHHHHTTTS---SSSCCTTC-CHHHHHHHHH
T ss_pred EEecCchhhHHHHHHh-hChHHHhhcCH-HHHHHHHHHHc---CCCCCCCH-HHHHHHHHHH
Confidence 99976 566655443 22222223445 34444333332 45777654 4555565543
No 44
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.43 E-value=6.9e-12 Score=139.56 Aligned_cols=156 Identities=13% Similarity=0.039 Sum_probs=108.6
Q ss_pred CCCCEEEEEeccc-CCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCc
Q 003947 546 SSKPILFTMARLD-RVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQ 624 (784)
Q Consensus 546 ~~k~iIl~vGRL~-~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~ 624 (784)
..++++++.|++. ..+.+..+++++.++ +++++++++.... +..+..++|++.+
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~-----~~~vv~~~g~~~~------------------~~~~~~~~v~~~~-- 274 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ-----GRRVVLSSGWAGL------------------GRIDEGDDCLVVG-- 274 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT-----TCCEEEECTTTTC------------------CCSSCCTTEEEES--
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC-----CCEEEEEeCCccc------------------ccccCCCCEEEec--
Confidence 4567888999998 666677777777664 4677777665331 1124468899998
Q ss_pred CCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcccc----ccccccCceEEEECCC--CHHHHHH
Q 003947 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGP----AEIIVHGKSGFHIDPY--KGDQATG 698 (784)
Q Consensus 625 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~----~EiI~dg~~G~li~p~--d~e~lAe 698 (784)
+++..++. . .+|++|..+- ..|+.|||++|+|+|+...++- .+.+++...|..+++. +.+++++
T Consensus 275 --~~~~~~ll---~-~~d~~v~~gG----~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ 344 (404)
T 3h4t_A 275 --EVNHQVLF---G-RVAAVVHHGG----AGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSA 344 (404)
T ss_dssp --SCCHHHHG---G-GSSEEEECCC----HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHH
T ss_pred --CCCHHHHH---h-hCcEEEECCc----HHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHH
Confidence 56555544 4 5999998641 2689999999999999865543 3445555688888754 6788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003947 699 ILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSG 743 (784)
Q Consensus 699 ~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~ 743 (784)
+|. ++++ |++++++.+.+.+.. . -.++..++.++++++
T Consensus 345 ai~----~ll~-~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 345 ALA----TALT-PGIRARAAAVAGTIR-T-DGTTVAAKLLLEAIS 382 (404)
T ss_dssp HHH----HHTS-HHHHHHHHHHHTTCC-C-CHHHHHHHHHHHHHH
T ss_pred HHH----HHhC-HHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHh
Confidence 886 5567 888888777665543 3 567777777777654
No 45
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.43 E-value=5e-11 Score=132.89 Aligned_cols=161 Identities=16% Similarity=0.083 Sum_probs=108.6
Q ss_pred CCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEE-EeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCc
Q 003947 546 SSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVV-VGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQ 624 (784)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvI-VG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~ 624 (784)
+.+.++++.|++. .+....+.+++..+.+ .++++++ +|.+.+. +.+ + .++++|++.|
T Consensus 254 ~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~--~~~~~~~~~g~~~~~-----------~~~----~--~~~~~v~~~~-- 311 (424)
T 2iya_A 254 GRPVLLIALGSAF-TDHLDFYRTCLSAVDG--LDWHVVLSVGRFVDP-----------ADL----G--EVPPNVEVHQ-- 311 (424)
T ss_dssp SCCEEEEECCSSS-CCCHHHHHHHHHHHTT--CSSEEEEECCTTSCG-----------GGG----C--SCCTTEEEES--
T ss_pred CCCEEEEEcCCCC-cchHHHHHHHHHHHhc--CCcEEEEEECCcCCh-----------HHh----c--cCCCCeEEec--
Confidence 3456778889987 3444444455555544 4567754 5655320 111 1 2567899998
Q ss_pred CCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECCC--CHHHHHH
Q 003947 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGG----PAEIIVHGKSGFHIDPY--KGDQATG 698 (784)
Q Consensus 625 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG----~~EiI~dg~~G~li~p~--d~e~lAe 698 (784)
+++.. .+++ .+|++|..+ -..+++|||++|+|+|+....+ ..+.+.+...|+.+++. +.+++++
T Consensus 312 --~~~~~---~~l~-~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~ 381 (424)
T 2iya_A 312 --WVPQL---DILT-KASAFITHA----GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLRE 381 (424)
T ss_dssp --SCCHH---HHHT-TCSEEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHH
T ss_pred --CCCHH---HHHh-hCCEEEECC----chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHH
Confidence 45443 4666 499999753 2479999999999999986643 34556666789998765 7888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003947 699 ILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSG 743 (784)
Q Consensus 699 ~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~ 743 (784)
+|.+ +++|++.++++++.+.+.. +....+..++.++++.+
T Consensus 382 ~i~~----ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 382 AVLA----VASDPGVAERLAAVRQEIR-EAGGARAAADILEGILA 421 (424)
T ss_dssp HHHH----HHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHH----HHcCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHh
Confidence 8875 4469998888877766643 55677777777777654
No 46
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.40 E-value=1.5e-11 Score=145.43 Aligned_cols=230 Identities=13% Similarity=0.066 Sum_probs=157.9
Q ss_pred hHHHhcccCEEEecChHhHhhcccc-ccccccccccccccceeeecCCCCCCCceEEecCCCCCCCC----CCCcHHHH-
Q 003947 444 DLFAMNRTDFIITSTFQEIAGSKDT-VGQYESHTAFSLPGLYRVVNGIDAFDPKFNIVSPGADMTIY----FPYMEEKR- 517 (784)
Q Consensus 444 e~~a~~~AD~IIt~S~~~~~~~~~~-vgqYe~~~~f~~p~l~~~~~gi~~f~~k~~VIpnGvD~~~f----~p~~~~~~- 517 (784)
-..++..|+.|.+||+.-.+.++.. ++. ++. ..+.|++-|.||||...| .|..+..-
T Consensus 431 a~lai~~S~~VNgVS~lH~e~ik~~~f~~-----------~~~------~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~ 493 (824)
T 2gj4_A 431 AHLCIAGSHAVNGVARIHSEILKKTIFKD-----------FYE------LEPHKFQNKTNGITPRRWLVLCNPGLAEIIA 493 (824)
T ss_dssp HHHHHHTCSCEEESSHHHHHHHHHTTTHH-----------HHH------HCGGGEEECCCCBCTCCCCCCTCHHHHHHHH
T ss_pred HHHHHHhcCceeeEcHHHHHHHhhHHhHH-----------HHH------cChhhcccccCCcChhhhcccCCHhHHHHHH
Confidence 3468999999999998877655432 221 121 126799999999999998 45322110
Q ss_pred -h-----------hhc---ch--hhh-----HHhhcCchh----hhhhhccccCCCCCEEEEEecccCCCChHHH-HHHH
Q 003947 518 -R-----------LKH---FH--SEI-----EELLYSPVE----NKEHLCVLKDSSKPILFTMARLDRVKNLTGL-VEWY 570 (784)
Q Consensus 518 -r-----------l~~---~~--~~~-----~~~l~~~~~----~~~~~gll~~~~k~iIl~vGRL~~~Kgi~~L-ieA~ 570 (784)
. +.+ +. ..+ +...-++.. ..++.|+..+++.+.++++.|+...|+.+.+ +..+
T Consensus 494 ~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i 573 (824)
T 2gj4_A 494 ERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVI 573 (824)
T ss_dssp HHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHH
T ss_pred HhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHH
Confidence 1 000 00 111 111122222 4556788778899999999999999999997 7777
Q ss_pred HHhHc--cCC-----CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcC----CCC--cEEEccCcCCcCChhHHHHHH
Q 003947 571 GKNAK--LRE-----LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYK----LNG--QFRWISSQMNRVRNGELYRYI 637 (784)
Q Consensus 571 ~~l~~--~~~-----~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~----L~~--~V~flG~~~~~v~~~el~~~l 637 (784)
.++.+ ..| .+.+++.|.+.+. +...+..++.+..+++.++ +.+ +|.|+. ..+. .+.+.+
T Consensus 574 ~~~~~i~~~~~~~~~p~q~If~GKA~P~---y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~----nYdv-slA~~I 645 (824)
T 2gj4_A 574 TLYNRIKKEPNKFVVPRTVMIGGKAAPG---YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLE----NYRV-SLAEKV 645 (824)
T ss_dssp HHHHHHHHCTTSCCCCEEEEEECCCCTT---CHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEET----TCCH-HHHHHH
T ss_pred HHHHHHHhCCCCCCCCEEEEEEEeCCHh---HHHHHHHHHHHHHHHHHhccCcccCCceEEEEEC----CCCH-HHHHHH
Confidence 66631 122 5789999988653 4445556666777776553 456 788885 3333 555555
Q ss_pred HccccEEEeCCC--CCCCcHHHHHHHHcCCcEEEcCccccccccc--cCceEEEECCCCHHHHHHHH
Q 003947 638 CDTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCNGGPAEIIV--HGKSGFHIDPYKGDQATGIL 700 (784)
Q Consensus 638 a~aadvfV~PS~--~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~--dg~~G~li~p~d~e~lAe~I 700 (784)
..++|++.+||. +|++|+.-+=||..|.++|+|-.|...|+.+ ...|||+|... ++++ ..+
T Consensus 646 ~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~-~~ev-~~l 710 (824)
T 2gj4_A 646 IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMR-VEDV-DRL 710 (824)
T ss_dssp GGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCC-HHHH-HHH
T ss_pred hhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCc-HHHH-HHH
Confidence 557999999999 9999999999999999999999888888865 45689999875 6666 444
No 47
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.39 E-value=3.2e-12 Score=150.51 Aligned_cols=333 Identities=13% Similarity=0.029 Sum_probs=209.9
Q ss_pred CceEEEEcCCChhHHHH-HHHHh--------------CCCcEEEEecCCcccC---CCCCcc------hhh---hccc--
Q 003947 383 KPDLIIGNYSDGNIVAS-LLAHK--------------LDVTQCTIAHALELTK---YPDSDI------NWK---KLDD-- 433 (784)
Q Consensus 383 ~pDIIh~~~~~~~lva~-llar~--------------~gvp~V~t~H~l~~~k---~~~s~~------~~~---~~~~-- 433 (784)
+||+||+|.++++++.. ++... .+.++++|.|++.+.- |+..-+ ... .+..
T Consensus 299 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~f 378 (796)
T 1l5w_A 299 DYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRF 378 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccEEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhhhhcCCHHHHHHHhHHHHHHHhccCHHH
Confidence 69999999999877555 33221 3678999999986533 110000 000 0000
Q ss_pred -------------cc-c----ccchhhhhHHHhcccCEEEecChHhHhhccccccccccccccccccceeeecCCCCCCC
Q 003947 434 -------------KY-H----FSCQFTADLFAMNRTDFIITSTFQEIAGSKDTVGQYESHTAFSLPGLYRVVNGIDAFDP 495 (784)
Q Consensus 434 -------------~y-~----~~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~vgqYe~~~~f~~p~l~~~~~gi~~f~~ 495 (784)
.+ + .-.++..-..++..|+.|.+||+.-.+.++...- ++++ ..++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~f----------~~~~------~~~p~ 442 (796)
T 1l5w_A 379 KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLF----------PEYH------QLWPN 442 (796)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEETTEEEHHHHHHHHSSEEEESSHHHHHHHHHTTS----------HHHH------HHCGG
T ss_pred HHHHHHhcCCcHHHHhhhhcccCCcccHHHHHHHhcCccccccHHHHHHHHhHHh----------hHHH------HhCcc
Confidence 00 0 0001222346789999999999877765543210 0111 12367
Q ss_pred ceEEecCCCCCCCC----CCCcHHH--Hh-----------hhcchh---------hh-HHhhcCchh----hhhhhcccc
Q 003947 496 KFNIVSPGADMTIY----FPYMEEK--RR-----------LKHFHS---------EI-EELLYSPVE----NKEHLCVLK 544 (784)
Q Consensus 496 k~~VIpnGvD~~~f----~p~~~~~--~r-----------l~~~~~---------~~-~~~l~~~~~----~~~~~gll~ 544 (784)
|++-|.||||...| .|..+.- .. +.++.+ ++ +...-++.. .+++.|+..
T Consensus 443 k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~v 522 (796)
T 1l5w_A 443 KFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEI 522 (796)
T ss_dssp GEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 89999999998887 3432111 00 001000 00 111122223 356678877
Q ss_pred CCCCCEEEEEecccCCCChHH-HHHHHHHhHcc--C-----CCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHH----hc
Q 003947 545 DSSKPILFTMARLDRVKNLTG-LVEWYGKNAKL--R-----ELVNLVVVGGDRRKESKDLEEQAEMKKMYGLID----TY 612 (784)
Q Consensus 545 ~~~k~iIl~vGRL~~~Kgi~~-LieA~~~l~~~--~-----~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~----~l 612 (784)
+++.+.++++.|+...|+.+. ++..+.++.+. . ..+.+++.|.+.+. +...+..++.+..+++ ..
T Consensus 523 dpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~---y~~aK~iIk~i~~va~~in~Dp 599 (796)
T 1l5w_A 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPG---YYLAKNIIFAINKVADVINNDP 599 (796)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTT---CHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChh---HHHHHHHHHHHHHHHHHhcccc
Confidence 889999999999999999999 78877766431 2 35899999988653 3334445555555555 23
Q ss_pred CCCC--cEEEccCcCCcCChhHHHHHHHccccEEEeCCC--CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CceEE
Q 003947 613 KLNG--QFRWISSQMNRVRNGELYRYICDTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCNGGPAEIIVH--GKSGF 686 (784)
Q Consensus 613 ~L~~--~V~flG~~~~~v~~~el~~~la~aadvfV~PS~--~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~d--g~~G~ 686 (784)
..++ +|.|+. ..+. .+.+.+..++|++.+||. +|++|+.-+=||..|.++|+|-.|...|+.++ ..|||
T Consensus 600 ~~~~~lKVvfl~----nY~v-slA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF 674 (796)
T 1l5w_A 600 LVGDKLKVVFLP----DYCV-SAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIF 674 (796)
T ss_dssp TTGGGEEEEECS----SCCH-HHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSE
T ss_pred ccCCceEEEEEC----CCCH-HHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcEE
Confidence 4567 788885 3333 555555557999999999 99999999999999999999999999888765 46999
Q ss_pred EECCCCHHHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 003947 687 HIDPYKGDQATGI---LVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSGVY 745 (784)
Q Consensus 687 li~p~d~e~lAe~---I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~~~ 745 (784)
+|.. +++++.+. ..+..+....+| .++++-+++.. ..|+|..- +.+..+|...
T Consensus 675 ~FG~-~~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~~---g~fs~~~~-~~y~~Ly~~L 730 (796)
T 1l5w_A 675 IFGH-TVEQVKAILAKGYDPVKWRKKDK-VLDAVLKELES---GKYSDGDK-HAFDQMLHSI 730 (796)
T ss_dssp ECSC-CHHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHHH---TTTTTTCT-TTTHHHHHHT
T ss_pred EecC-CHHHHHHHHHcccCHHHHhhcCH-HHHHHHHHHHc---CCCCCCcH-HHHHHHHHHH
Confidence 9976 77776532 111222223466 35555555543 57999774 6788888764
No 48
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.31 E-value=4.5e-11 Score=133.16 Aligned_cols=154 Identities=12% Similarity=0.016 Sum_probs=104.3
Q ss_pred CCCEEEEEecc-cCCCChHHHHHHHHHhHccCCCeEEEEE-eCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCc
Q 003947 547 SKPILFTMARL-DRVKNLTGLVEWYGKNAKLRELVNLVVV-GGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQ 624 (784)
Q Consensus 547 ~k~iIl~vGRL-~~~Kgi~~LieA~~~l~~~~~~v~LvIV-G~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~ 624 (784)
+..++++.|++ ...+..+.++++++++. .+++++ |.+... ...++++|++.|
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~~-----~~~v~~~g~~~~~-------------------~~~~~~~v~~~~-- 291 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAHG-----RRVILSRGWADLV-------------------LPDDGADCFAIG-- 291 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHTT-----CCEEECTTCTTCC-------------------CSSCGGGEEECS--
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHCC-----CeEEEEeCCCccc-------------------ccCCCCCEEEeC--
Confidence 45788899999 57788888888887652 456555 544220 013457899998
Q ss_pred CCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECCC--CHHHHHH
Q 003947 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGG----PAEIIVHGKSGFHIDPY--KGDQATG 698 (784)
Q Consensus 625 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG----~~EiI~dg~~G~li~p~--d~e~lAe 698 (784)
+++..++ ++ ++|+||..+ | ..+++|||++|+|+|+....+ ..+.+++...|..+++. +.+++++
T Consensus 292 --~~~~~~~---l~-~~d~~v~~~---G-~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~ 361 (415)
T 1iir_A 292 --EVNHQVL---FG-RVAAVIHHG---G-AGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSA 361 (415)
T ss_dssp --SCCHHHH---GG-GSSEEEECC---C-HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHH
T ss_pred --cCChHHH---Hh-hCCEEEeCC---C-hhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHH
Confidence 6666555 45 699999863 2 369999999999999986654 45666666789998764 6778888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003947 699 ILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLS 742 (784)
Q Consensus 699 ~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly 742 (784)
+|. ++ .|++.++++++.+.+.. ..-..+.+++.++++.
T Consensus 362 ~i~----~l-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 399 (415)
T 1iir_A 362 ALA----TA-LTPETHARATAVAGTIR-TDGAAVAARLLLDAVS 399 (415)
T ss_dssp HHH----HH-TSHHHHHHHHHHHHHSC-SCHHHHHHHHHHHHHH
T ss_pred HHH----HH-cCHHHHHHHHHHHHHHh-hcChHHHHHHHHHHHH
Confidence 775 66 78988887766655432 3344555555555543
No 49
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.27 E-value=2.9e-11 Score=139.85 Aligned_cols=187 Identities=9% Similarity=-0.031 Sum_probs=128.5
Q ss_pred hccccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEE--EEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCc
Q 003947 540 LCVLKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLV--VVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQ 617 (784)
Q Consensus 540 ~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~Lv--IVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~ 617 (784)
+|++.+++.+++++.+++ .|..+.+++++.++.+..|+..++ ++|.+.. .+ +.+.+.+.+.|+.++
T Consensus 433 ~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g------~~----~~~~~~~~~~GI~~R 500 (631)
T 3q3e_A 433 YLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRDRAKVKVHFHFALGQSNG------IT----HPYVERFIKSYLGDS 500 (631)
T ss_dssp CCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCG------GG----HHHHHHHHHHHHGGG
T ss_pred ccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCch------hh----HHHHHHHHHcCCCcc
Confidence 455222335667777764 799999999999998888887765 3564321 01 122233456678789
Q ss_pred EEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccc------cCceEEEECCC
Q 003947 618 FRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIV------HGKSGFHIDPY 691 (784)
Q Consensus 618 V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~------dg~~G~li~p~ 691 (784)
+.|+| +++..+..+.++. +|+++-|+.+.+ |+|.+|||+||+|||+...+++..-+. -|..+++|. .
T Consensus 501 v~F~g----~~p~~e~la~y~~-aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA-~ 573 (631)
T 3q3e_A 501 ATAHP----HSPYHQYLRILHN-CDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIA-N 573 (631)
T ss_dssp EEEEC----CCCHHHHHHHHHT-CSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEE-S
T ss_pred EEEcC----CCCHHHHHHHHhc-CcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceec-C
Confidence 99999 7778888888885 999999998766 999999999999999966555544432 244443232 3
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-Hhhhhh
Q 003947 692 KGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNLSG-VYGFWK 749 (784)
Q Consensus 692 d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~ly~-~~~~~~ 749 (784)
|.++.+++.. ++.+|++.+++++++.+++.....-|+..++++.++|+ .+.-|.
T Consensus 574 d~eeYv~~Av----~La~D~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~w~ 628 (631)
T 3q3e_A 574 TVDEYVERAV----RLAENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNAFL 628 (631)
T ss_dssp SHHHHHHHHH----HHHHCHHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH----HHhCCHHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHH
Confidence 6788887776 55689999999999999886553222244555555554 234454
No 50
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.26 E-value=1.6e-10 Score=128.75 Aligned_cols=152 Identities=12% Similarity=-0.007 Sum_probs=101.0
Q ss_pred CCCEEEEEeccc---CCCChHHHHHHHHHhHccCCCeEEEEE-eCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEcc
Q 003947 547 SKPILFTMARLD---RVKNLTGLVEWYGKNAKLRELVNLVVV-GGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWIS 622 (784)
Q Consensus 547 ~k~iIl~vGRL~---~~Kgi~~LieA~~~l~~~~~~v~LvIV-G~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG 622 (784)
++.++++.|++. ..+.+..++++++.+ +++++++ |.+... ...+++++.+.+
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~-------------------~~~~~~~v~~~~ 292 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ-----GRRVILSRGWTELV-------------------LPDDRDDCFAID 292 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT-----TCCEEEECTTTTCC-------------------CSCCCTTEEEES
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC-----CCeEEEEeCCcccc-------------------ccCCCCCEEEec
Confidence 456788899985 456677777777664 3566665 544210 023567899998
Q ss_pred CcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECC--CCHHHH
Q 003947 623 SQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGG----PAEIIVHGKSGFHIDP--YKGDQA 696 (784)
Q Consensus 623 ~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG----~~EiI~dg~~G~li~p--~d~e~l 696 (784)
+++..++ +. ++|++|.-+ -..|+.|||++|+|+|+....+ ..+.+++...|..++. .+.+++
T Consensus 293 ----~~~~~~l---l~-~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l 360 (416)
T 1rrv_A 293 ----EVNFQAL---FR-RVAAVIHHG----SAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESL 360 (416)
T ss_dssp ----SCCHHHH---GG-GSSEEEECC----CHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHH
T ss_pred ----cCChHHH---hc-cCCEEEecC----ChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHH
Confidence 6665554 45 699999842 2469999999999999975543 4555666668998875 367777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHH
Q 003947 697 TGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERL-LNL 741 (784)
Q Consensus 697 Ae~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~l-l~l 741 (784)
+++|. ++ .|+++++++++.+.+.. ..-.+ ..++.+ +.+
T Consensus 361 ~~~i~----~l-~~~~~~~~~~~~~~~~~-~~~~~-~~~~~i~e~~ 399 (416)
T 1rrv_A 361 SAALT----TV-LAPETRARAEAVAGMVL-TDGAA-AAADLVLAAV 399 (416)
T ss_dssp HHHHH----HH-TSHHHHHHHHHHTTTCC-CCHHH-HHHHHHHHHH
T ss_pred HHHHH----Hh-hCHHHHHHHHHHHHHHh-hcCcH-HHHHHHHHHH
Confidence 77775 67 79988888776554433 22333 445544 444
No 51
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.24 E-value=4.8e-11 Score=131.26 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=102.2
Q ss_pred CCCCEEEEEecccCCCC-hHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCc
Q 003947 546 SSKPILFTMARLDRVKN-LTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQ 624 (784)
Q Consensus 546 ~~k~iIl~vGRL~~~Kg-i~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~ 624 (784)
+..+++++.|++...++ ...+.+++..+.+ .+..+++++++.+. .....+++++.+.+
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~~~~-----------------~~~~~~~~~v~~~~-- 294 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVAD--VDAEFVLTLGGGDL-----------------ALLGELPANVRVVE-- 294 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGG--SSSEEEEECCTTCC-----------------CCCCCCCTTEEEEC--
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhc--cCceEEEEecCccc-----------------cccccCCCCEEEEe--
Confidence 34456778888876543 4455555555554 35666766655431 01124678899988
Q ss_pred CCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECCCCHHHHHHHH
Q 003947 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGG----PAEIIVHGKSGFHIDPYKGDQATGIL 700 (784)
Q Consensus 625 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG----~~EiI~dg~~G~li~p~d~e~lAe~I 700 (784)
+++..++ ++ .+|+||.- +-..++.|||++|+|+|+....+ ..+.+++...|..+++.+ ..+++|
T Consensus 295 --~~p~~~l---L~-~~~~~v~h----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~~--~~~~al 362 (400)
T 4amg_A 295 --WIPLGAL---LE-TCDAIIHH----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAGS--LGAEQC 362 (400)
T ss_dssp --CCCHHHH---HT-TCSEEEEC----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTTT--CSHHHH
T ss_pred --ecCHHHH---hh-hhhheecc----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCCC--chHHHH
Confidence 6666554 45 58999864 34568999999999999965443 455566656788887544 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003947 701 VDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSERLLNL 741 (784)
Q Consensus 701 ~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~~ll~l 741 (784)
.+ +++||+++++..+-+.+ +...-+....++.++++
T Consensus 363 ~~----lL~d~~~r~~a~~l~~~-~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 363 RR----LLDDAGLREAALRVRQE-MSEMPPPAETAAXLVAL 398 (400)
T ss_dssp HH----HHHCHHHHHHHHHHHHH-HHTSCCHHHHHHHHHHH
T ss_pred HH----HHcCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHh
Confidence 64 45799988776654444 44556888888888776
No 52
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.94 E-value=2.1e-09 Score=104.45 Aligned_cols=133 Identities=11% Similarity=0.066 Sum_probs=97.3
Q ss_pred CCCEEEEEeccc---CCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccC
Q 003947 547 SKPILFTMARLD---RVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISS 623 (784)
Q Consensus 547 ~k~iIl~vGRL~---~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~ 623 (784)
.+.++++.|++. +.|++..+++++.++ +.++++++++... -.+.++|++.|
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~--------------------~~~~~~v~~~~- 74 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQI-----PQKVLWRFDGNKP--------------------DTLGLNTRLYK- 74 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTS-----SSEEEEECCSSCC--------------------TTCCTTEEEES-
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhC-----CCeEEEEECCcCc--------------------ccCCCcEEEec-
Confidence 456788999986 567777777777543 3688888876431 03467899998
Q ss_pred cCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCceEEEECCC--CHHHHH
Q 003947 624 QMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNG----GPAEIIVHGKSGFHIDPY--KGDQAT 697 (784)
Q Consensus 624 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~G----G~~EiI~dg~~G~li~p~--d~e~lA 697 (784)
+++..++..+ + ++|++|.. +-+.|++|||++|+|+|+.... +..+.+.+...|+.+++. +.++++
T Consensus 75 ---~~~~~~~l~~-~-~ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~ 145 (170)
T 2o6l_A 75 ---WIPQNDLLGH-P-KTRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLL 145 (170)
T ss_dssp ---SCCHHHHHTS-T-TEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHH
T ss_pred ---CCCHHHHhcC-C-CcCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHH
Confidence 5666565533 5 59999985 3468999999999999999764 346677777899999877 788899
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 003947 698 GILVDFFEKCKVDPGHWDEIS 718 (784)
Q Consensus 698 e~I~~~l~~ll~dp~~~~~m~ 718 (784)
++|.++ +.|++.++++.
T Consensus 146 ~~i~~l----l~~~~~~~~a~ 162 (170)
T 2o6l_A 146 NALKRV----INDPSYKENVM 162 (170)
T ss_dssp HHHHHH----HHCHHHHHHHH
T ss_pred HHHHHH----HcCHHHHHHHH
Confidence 988754 46887555443
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.00 E-value=9.6e-05 Score=88.31 Aligned_cols=183 Identities=12% Similarity=0.028 Sum_probs=133.5
Q ss_pred hhhhhccccCCCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCC
Q 003947 536 NKEHLCVLKDSSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLN 615 (784)
Q Consensus 536 ~~~~~gll~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~ 615 (784)
.|..+|+ +.+.+++++..++ .|=-+..++++.++.+.-|+.+|++...... ..+.+.+.+++.|+.
T Consensus 513 ~R~~~gL--p~~~v~f~~fN~~--~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~----------~~~~l~~~~~~~gi~ 578 (723)
T 4gyw_A 513 TRSQYGL--PEDAIVYCNFNQL--YKIDPSTLQMWANILKRVPNSVLWLLRFPAV----------GEPNIQQYAQNMGLP 578 (723)
T ss_dssp EGGGGTC--CTTSEEEECCSCG--GGCCHHHHHHHHHHHHHCSSEEEEEEETTGG----------GHHHHHHHHHHTTCC
T ss_pred chhhcCC--CCCCEEEEeCCcc--ccCCHHHHHHHHHHHHhCCCCeEEEEeCcHH----------HHHHHHHHHHhcCCC
Confidence 4566787 5666666666555 4666788888888888889999999886532 124577788888885
Q ss_pred -CcEEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcccccccc-----cc-CceEEEE
Q 003947 616 -GQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEII-----VH-GKSGFHI 688 (784)
Q Consensus 616 -~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~~EiI-----~d-g~~G~li 688 (784)
++|.|.+ +.+..+-...+.. +|+++=|--|-| |.|..||+.||+|||+-....+..-+ .. |-.-++.
T Consensus 579 ~~r~~f~~----~~~~~~~l~~~~~-~Di~LDt~p~~g-~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia 652 (723)
T 4gyw_A 579 QNRIIFSP----VAPKEEHVRRGQL-ADVCLDTPLCNG-HTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIA 652 (723)
T ss_dssp GGGEEEEE----CCCHHHHHHHGGG-CSEEECCSSSCC-SHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBC
T ss_pred cCeEEECC----CCCHHHHHHHhCC-CeEEeCCCCcCC-HHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCccccc
Confidence 7899998 6677888887885 999998876655 88999999999999975322222111 10 1112222
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHH
Q 003947 689 DPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQE--KYTWKIYSERLLNLSGV 744 (784)
Q Consensus 689 ~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~--~ytw~~~a~~ll~ly~~ 744 (784)
.|.++..+... ++.+|++.+.++.++-++.... -|+-+.+++.+++.|+.
T Consensus 653 --~~~~~Y~~~a~----~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~ 704 (723)
T 4gyw_A 653 --KNRQEYEDIAV----KLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQ 704 (723)
T ss_dssp --SSHHHHHHHHH----HHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHH----HHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHH
Confidence 46677666655 4557999999999988888755 48999999999999985
No 54
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.90 E-value=0.0034 Score=71.12 Aligned_cols=152 Identities=10% Similarity=0.036 Sum_probs=83.8
Q ss_pred CCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCC
Q 003947 547 SKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMN 626 (784)
Q Consensus 547 ~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~ 626 (784)
...++++.|.+.. .....+.+++..+.+ .+.+++++-+.......+ . ...+.+. +.. .+++...+
T Consensus 295 ~~vv~vs~GS~~~-~~~~~~~~~~~~l~~--~~~~~l~~~~~~~~~~~~-~--~l~~~~~---~~~--~~~~~v~~---- 359 (482)
T 2pq6_A 295 GSVVYVNFGSTTV-MTPEQLLEFAWGLAN--CKKSFLWIIRPDLVIGGS-V--IFSSEFT---NEI--ADRGLIAS---- 359 (482)
T ss_dssp TCEEEEECCSSSC-CCHHHHHHHHHHHHH--TTCEEEEECCGGGSTTTG-G--GSCHHHH---HHH--TTTEEEES----
T ss_pred CceEEEecCCccc-CCHHHHHHHHHHHHh--cCCcEEEEEcCCcccccc-c--cCcHhHH---Hhc--CCCEEEEe----
Confidence 3456677787653 344445555555544 246766664432100000 0 0001111 111 46788887
Q ss_pred cCChhHHHHHHHc-cccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccc-cCceEEEECC-CCHHHHHHH
Q 003947 627 RVRNGELYRYICD-TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGG----PAEIIV-HGKSGFHIDP-YKGDQATGI 699 (784)
Q Consensus 627 ~v~~~el~~~la~-aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG----~~EiI~-dg~~G~li~p-~d~e~lAe~ 699 (784)
+++..+ +++. ++++||.= +=..+++||+++|+|+|+-...+ .+..+. +-..|..++. -+.++++++
T Consensus 360 ~~pq~~---~L~h~~~~~~vth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~~ 432 (482)
T 2pq6_A 360 WCPQDK---VLNHPSIGGFLTH----CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKL 432 (482)
T ss_dssp CCCHHH---HHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCHHHHHHH
T ss_pred ecCHHH---HhcCCCCCEEEec----CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCHHHHHHH
Confidence 565544 5542 24457753 22468999999999999975543 234343 4457888762 266777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHH
Q 003947 700 LVDFFEKCKVDPGHWDEISQGGLKRI 725 (784)
Q Consensus 700 I~~~l~~ll~dp~~~~~m~~~a~~~v 725 (784)
|. +++.|++ .++|.+++++..
T Consensus 433 i~----~ll~~~~-~~~~r~~a~~l~ 453 (482)
T 2pq6_A 433 IN----EVIAGDK-GKKMKQKAMELK 453 (482)
T ss_dssp HH----HHHTSHH-HHHHHHHHHHHH
T ss_pred HH----HHHcCCc-HHHHHHHHHHHH
Confidence 76 4557886 356666665543
No 55
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.82 E-value=0.009 Score=67.73 Aligned_cols=70 Identities=9% Similarity=0.138 Sum_probs=44.9
Q ss_pred cCChhHHHHHHHcccc--EEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----ccccc-ccCceEEEECCC-----CHH
Q 003947 627 RVRNGELYRYICDTKG--AFVQPALYEAFGLTVVEAMTCGLPTFATCNGG----PAEII-VHGKSGFHIDPY-----KGD 694 (784)
Q Consensus 627 ~v~~~el~~~la~aad--vfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG----~~EiI-~dg~~G~li~p~-----d~e 694 (784)
+++.. .+++ .++ +||.= -| -.+++||+++|+|+|+-...+ .+..+ +.-..|..++.. +.+
T Consensus 346 w~Pq~---~vL~-h~~v~~fvtH---gG-~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~ 417 (480)
T 2vch_A 346 WAPQA---QVLA-HPSTGGFLTH---CG-WNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRRE 417 (480)
T ss_dssp CCCHH---HHHH-STTEEEEEEC---CC-HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHH
T ss_pred ccCHH---HHhC-CCCcCeEEec---cc-chhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHH
Confidence 44444 4554 366 56643 22 358999999999999975433 34443 455678877653 577
Q ss_pred HHHHHHHHHH
Q 003947 695 QATGILVDFF 704 (784)
Q Consensus 695 ~lAe~I~~~l 704 (784)
+++++|.+++
T Consensus 418 ~l~~av~~vl 427 (480)
T 2vch_A 418 EVARVVKGLM 427 (480)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887544
No 56
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.78 E-value=0.003 Score=71.15 Aligned_cols=148 Identities=10% Similarity=0.054 Sum_probs=83.6
Q ss_pred CCCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcC
Q 003947 546 SSKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQM 625 (784)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~ 625 (784)
+...++++.|.+... ..+.+.+++..+.+. +++++++-+.... ..-++ .+. ++ ..+++...+
T Consensus 270 ~~~vv~vs~GS~~~~-~~~~~~~~~~~l~~~--~~~~lw~~~~~~~-~~l~~------~~~---~~--~~~~~~v~~--- 331 (456)
T 2c1x_A 270 PTSVVYISFGTVTTP-PPAEVVALSEALEAS--RVPFIWSLRDKAR-VHLPE------GFL---EK--TRGYGMVVP--- 331 (456)
T ss_dssp TTCEEEEECCSSCCC-CHHHHHHHHHHHHHH--TCCEEEECCGGGG-GGSCT------THH---HH--HTTTEEEES---
T ss_pred CcceEEEecCccccC-CHHHHHHHHHHHHhc--CCeEEEEECCcch-hhCCH------HHH---hh--cCCceEEec---
Confidence 344567778887643 334555555444432 3455554433110 00000 011 11 135777777
Q ss_pred CcCChhHHHHHHHc-cccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccC-ceEEEECCC--CHHHHH
Q 003947 626 NRVRNGELYRYICD-TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGG----PAEIIVHG-KSGFHIDPY--KGDQAT 697 (784)
Q Consensus 626 ~~v~~~el~~~la~-aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG----~~EiI~dg-~~G~li~p~--d~e~lA 697 (784)
+++.. .+++. ++|+||.= +=.++++||+++|+|+|+-...+ .+..+.+. ..|..++.. +.++++
T Consensus 332 -w~pq~---~vL~h~~~~~fvth----~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l~ 403 (456)
T 2c1x_A 332 -WAPQA---EVLAHEAVGAFVTH----CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLM 403 (456)
T ss_dssp -CCCHH---HHHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHH
T ss_pred -CCCHH---HHhcCCcCCEEEec----CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcCHHHHH
Confidence 55553 45553 36788863 22468999999999999975432 34455555 678887643 567788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 003947 698 GILVDFFEKCKVDPGHWDEISQGGLKR 724 (784)
Q Consensus 698 e~I~~~l~~ll~dp~~~~~m~~~a~~~ 724 (784)
++|.++ +.|++ .++|.+++++.
T Consensus 404 ~~i~~l----l~~~~-~~~~r~~a~~l 425 (456)
T 2c1x_A 404 SCFDQI----LSQEK-GKKLRENLRAL 425 (456)
T ss_dssp HHHHHH----HHSHH-HHHHHHHHHHH
T ss_pred HHHHHH----HCCCc-HHHHHHHHHHH
Confidence 887654 46775 45666666554
No 57
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.68 E-value=0.007 Score=68.27 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=74.7
Q ss_pred CCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCC
Q 003947 547 SKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMN 626 (784)
Q Consensus 547 ~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~ 626 (784)
...++++.|.+...-+.+.+.+++..+.+. +.+++++-+.... ..++ .+.+.... .+++...+
T Consensus 276 ~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~--~l~~------~~~~~~~~---~~~~~v~~---- 338 (463)
T 2acv_A 276 KSVVFLCFGSMGVSFGPSQIREIALGLKHS--GVRFLWSNSAEKK--VFPE------GFLEWMEL---EGKGMICG---- 338 (463)
T ss_dssp TCEEEEECCSSCCCCCHHHHHHHHHHHHHH--TCEEEEECCCCGG--GSCT------THHHHHHH---HCSEEEES----
T ss_pred CceEEEEeccccccCCHHHHHHHHHHHHhC--CCcEEEEECCCcc--cCCh------hHHHhhcc---CCCEEEEc----
Confidence 445667788876323434455555545442 4566666543200 0001 11111100 24677776
Q ss_pred cCChhHHHHHHH-ccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccc-cccCceEEEE-C---CC----C
Q 003947 627 RVRNGELYRYIC-DTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGG----PAEI-IVHGKSGFHI-D---PY----K 692 (784)
Q Consensus 627 ~v~~~el~~~la-~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG----~~Ei-I~dg~~G~li-~---p~----d 692 (784)
+++..+ +++ .++|+||.=. =.++++||+++|+|+|+-...+ .+.. ++.-..|..+ + .. +
T Consensus 339 w~pq~~---vL~h~~~~~fvth~----G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~ 411 (463)
T 2acv_A 339 WAPQVE---VLAHKAIGGFVSHC----GWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVA 411 (463)
T ss_dssp SCCHHH---HHHSTTEEEEEECC----CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCC
T ss_pred cCCHHH---HhCCCccCeEEecC----CchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCcccc
Confidence 555544 454 2477888642 2468999999999999975433 2444 4555688888 2 22 6
Q ss_pred HHHHHHHHHHHH
Q 003947 693 GDQATGILVDFF 704 (784)
Q Consensus 693 ~e~lAe~I~~~l 704 (784)
.++++++|.+++
T Consensus 412 ~~~l~~ai~~ll 423 (463)
T 2acv_A 412 AEEIEKGLKDLM 423 (463)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 778888886443
No 58
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=97.52 E-value=0.0019 Score=76.64 Aligned_cols=145 Identities=11% Similarity=0.009 Sum_probs=105.1
Q ss_pred hhh-ccccC-----CCCCEEEEEecccCCCChHH-HHHHHH---HhHcc-------------CCCeEEEEEeCCCCCCcc
Q 003947 538 EHL-CVLKD-----SSKPILFTMARLDRVKNLTG-LVEWYG---KNAKL-------------RELVNLVVVGGDRRKESK 594 (784)
Q Consensus 538 ~~~-gll~~-----~~k~iIl~vGRL~~~Kgi~~-LieA~~---~l~~~-------------~~~v~LvIVG~g~~~~s~ 594 (784)
++. |+.-+ |+...++++-|+..+|.... ++..+. ++++. .....+++.|...+.
T Consensus 584 ~~~~g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~--- 660 (879)
T 1ygp_A 584 KENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPG--- 660 (879)
T ss_dssp HTTTTCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTT---
T ss_pred HHcCCcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCC---
Confidence 344 66557 78899999999999999988 555433 33332 134777777765442
Q ss_pred cHHHHHHHHHHHHHHH----hcCCCC--cEEEccCcCCcCChhHHHHHHHccccEEEeCCC--CCCCcHHHHHHHHcCCc
Q 003947 595 DLEEQAEMKKMYGLID----TYKLNG--QFRWISSQMNRVRNGELYRYICDTKGAFVQPAL--YEAFGLTVVEAMTCGLP 666 (784)
Q Consensus 595 d~ee~~~~~~l~~li~----~l~L~~--~V~flG~~~~~v~~~el~~~la~aadvfV~PS~--~E~fGltvlEAMA~GlP 666 (784)
+...+..++.+...++ ...+.+ +|.|+. ..+. .+.+.+-.++|+-.+-|. .|+.|..-+=+|.-|.+
T Consensus 661 y~~aK~iIklI~~va~~iN~Dp~v~~~LKVVFle----nY~V-slAe~iipaaDvseqistag~EASGTsnMKfalNGaL 735 (879)
T 1ygp_A 661 YYMAKLIIKLINCVADIVNNDESIEHLLKVVFVA----DYNV-SKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGL 735 (879)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGTTSEEEEEET----TCCH-HHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCE
T ss_pred cHHHHHHHHHHHHHHHHhccChhhCCceEEEEeC----CCCH-HHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCe
Confidence 4445555666666665 334566 789986 3444 455555557999999887 89999999999999999
Q ss_pred EEEcCcccccccccc--CceEEEECC
Q 003947 667 TFATCNGGPAEIIVH--GKSGFHIDP 690 (784)
Q Consensus 667 VIaT~~GG~~EiI~d--g~~G~li~p 690 (784)
+++|-.|...|+.++ .+|+|+|-.
T Consensus 736 tlgtlDGanvEi~e~vG~eN~fiFG~ 761 (879)
T 1ygp_A 736 IIGTVDGANVEITREIGEDNVFLFGN 761 (879)
T ss_dssp EEEESCTHHHHHHHHHCGGGSEEESC
T ss_pred eeecccchhHHHHHHcCcccEEEccC
Confidence 999999999999876 458999864
No 59
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.45 E-value=0.0071 Score=68.20 Aligned_cols=145 Identities=11% Similarity=0.052 Sum_probs=82.2
Q ss_pred CCCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHH-HHHHHhcCCCCcEEEccCcC
Q 003947 547 SKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKM-YGLIDTYKLNGQFRWISSQM 625 (784)
Q Consensus 547 ~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l-~~li~~l~L~~~V~flG~~~ 625 (784)
...++++.|.+... ..+.+.+.+..+.+. +.+++++-+... .+.+ ....++ ..+++...+
T Consensus 273 ~~vVyvsfGS~~~~-~~~~~~el~~~l~~~--~~~flw~~~~~~-----------~~~lp~~~~~~--~~~~~~vv~--- 333 (454)
T 3hbf_A 273 SSVVYISFGSVVTP-PPHELTALAESLEEC--GFPFIWSFRGDP-----------KEKLPKGFLER--TKTKGKIVA--- 333 (454)
T ss_dssp TCEEEEECCSSCCC-CHHHHHHHHHHHHHH--CCCEEEECCSCH-----------HHHSCTTHHHH--TTTTEEEES---
T ss_pred CceEEEecCCCCcC-CHHHHHHHHHHHHhC--CCeEEEEeCCcc-----------hhcCCHhHHhh--cCCceEEEe---
Confidence 34456777887643 344555555555442 355665544321 0000 011111 246788877
Q ss_pred CcCChhHHHHHHHcccc--EEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccC-ceEEEECC--CCHHHH
Q 003947 626 NRVRNGELYRYICDTKG--AFVQPALYEAFGLTVVEAMTCGLPTFATCNGG----PAEIIVHG-KSGFHIDP--YKGDQA 696 (784)
Q Consensus 626 ~~v~~~el~~~la~aad--vfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG----~~EiI~dg-~~G~li~p--~d~e~l 696 (784)
+++..++. + .++ +||.=. | -.+++||+++|+|+|+-...+ .+..+.+. ..|..++. -+.+++
T Consensus 334 -w~Pq~~vL---~-h~~v~~fvtH~---G-~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l 404 (454)
T 3hbf_A 334 -WAPQVEIL---K-HSSVGVFLTHS---G-WNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESI 404 (454)
T ss_dssp -SCCHHHHH---H-STTEEEEEECC---C-HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHHH
T ss_pred -eCCHHHHH---h-hcCcCeEEecC---C-cchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHHH
Confidence 66665444 4 466 666532 2 358999999999999975433 34445553 68888864 357778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 003947 697 TGILVDFFEKCKVDPGHWDEISQGGLKR 724 (784)
Q Consensus 697 Ae~I~~~l~~ll~dp~~~~~m~~~a~~~ 724 (784)
+++|.++ +.+++ .++|++++++.
T Consensus 405 ~~av~~l----l~~~~-~~~~r~~a~~l 427 (454)
T 3hbf_A 405 KKALELT----MSSEK-GGIMRQKIVKL 427 (454)
T ss_dssp HHHHHHH----HSSHH-HHHHHHHHHHH
T ss_pred HHHHHHH----HCCCh-HHHHHHHHHHH
Confidence 8888754 46652 34555555543
No 60
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.15 E-value=0.015 Score=61.30 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=60.6
Q ss_pred CCEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCc
Q 003947 548 KPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNR 627 (784)
Q Consensus 548 k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~ 627 (784)
+.+++++|.-+...-...+++++. +. .. -.+|.|.+.. ..+++++..++. ++++..++..
T Consensus 158 ~~ILv~~GG~d~~~l~~~vl~~L~---~~-~~-i~vv~G~~~~----------~~~~l~~~~~~~---~~v~v~~~~~-- 217 (282)
T 3hbm_A 158 YDFFICMGGTDIKNLSLQIASELP---KT-KI-ISIATSSSNP----------NLKKLQKFAKLH---NNIRLFIDHE-- 217 (282)
T ss_dssp EEEEEECCSCCTTCHHHHHHHHSC---TT-SC-EEEEECTTCT----------THHHHHHHHHTC---SSEEEEESCS--
T ss_pred CeEEEEECCCchhhHHHHHHHHhh---cC-CC-EEEEECCCch----------HHHHHHHHHhhC---CCEEEEeCHH--
Confidence 356678888775443334444443 22 22 3455666633 134455555432 4799988544
Q ss_pred CChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcC
Q 003947 628 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATC 671 (784)
Q Consensus 628 v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~ 671 (784)
++..+|+. +|++|.+. |.|+.|++++|+|.|.-.
T Consensus 218 ----~m~~~m~~-aDlvI~~g-----G~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 218 ----NIAKLMNE-SNKLIISA-----SSLVNEALLLKANFKAIC 251 (282)
T ss_dssp ----CHHHHHHT-EEEEEEES-----SHHHHHHHHTTCCEEEEC
T ss_pred ----HHHHHHHH-CCEEEECC-----cHHHHHHHHcCCCEEEEe
Confidence 58888885 99999852 689999999999999864
No 61
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=94.29 E-value=0.13 Score=54.91 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=65.4
Q ss_pred CCEEEEEec-ccCCCChH--HHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcC--C-CCcEEEc
Q 003947 548 KPILFTMAR-LDRVKNLT--GLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYK--L-NGQFRWI 621 (784)
Q Consensus 548 k~iIl~vGR-L~~~Kgi~--~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~--L-~~~V~fl 621 (784)
+.+++..|. ..+.|... .+.+++..+.+. +++++++|+..+ . +...++.+..+ . ...+.+.
T Consensus 181 ~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e--------~---~~~~~i~~~~~~~~~~~~~~l~ 247 (348)
T 1psw_A 181 PMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKD--------H---EAGNEILAALNTEQQAWCRNLA 247 (348)
T ss_dssp CEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGG--------H---HHHHHHHTTSCHHHHTTEEECT
T ss_pred cEEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhh--------H---HHHHHHHHhhhhccccceEecc
Confidence 345666776 55667765 888888888764 689999876522 1 22223333222 0 1234566
Q ss_pred cCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc
Q 003947 622 SSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT 670 (784)
Q Consensus 622 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT 670 (784)
| ..+..++..+++. +|++|... .|..-+ |.|+|+|+|+-
T Consensus 248 g----~~sl~e~~ali~~-a~l~I~~D----sg~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 248 G----ETQLDQAVILIAA-CKAIVTND----SGLMHV-AAALNRPLVAL 286 (348)
T ss_dssp T----TSCHHHHHHHHHT-SSEEEEES----SHHHHH-HHHTTCCEEEE
T ss_pred C----cCCHHHHHHHHHh-CCEEEecC----CHHHHH-HHHcCCCEEEE
Confidence 6 6678899999996 99999874 244434 99999999984
No 62
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=91.45 E-value=0.69 Score=49.79 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=67.2
Q ss_pred CCCCCE-EEEEecccCCCCh--HHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEc
Q 003947 545 DSSKPI-LFTMARLDRVKNL--TGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWI 621 (784)
Q Consensus 545 ~~~k~i-Il~vGRL~~~Kgi--~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~fl 621 (784)
++++++ ++..|.=.+.|.. +.+.+.+..+.+. +.+++++|+..+ .+..+++.+..+ ...+.+.
T Consensus 182 ~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e-----------~~~~~~i~~~~~-~~~~~l~ 247 (349)
T 3tov_A 182 TDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMD-----------LEMVQPVVEQME-TKPIVAT 247 (349)
T ss_dssp CTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTT-----------HHHHHHHHHTCS-SCCEECT
T ss_pred CCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcch-----------HHHHHHHHHhcc-cccEEee
Confidence 334454 4556654455655 4777887777664 578888876532 122334444444 2346666
Q ss_pred cCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc
Q 003947 622 SSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT 670 (784)
Q Consensus 622 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT 670 (784)
| ..+..++..+++. +|++|.. + .|..-+ |.|+|+|+|+-
T Consensus 248 g----~~sl~e~~ali~~-a~~~i~~---D-sG~~Hl-Aaa~g~P~v~l 286 (349)
T 3tov_A 248 G----KFQLGPLAAAMNR-CNLLITN---D-SGPMHV-GISQGVPIVAL 286 (349)
T ss_dssp T----CCCHHHHHHHHHT-CSEEEEE---S-SHHHHH-HHTTTCCEEEE
T ss_pred C----CCCHHHHHHHHHh-CCEEEEC---C-CCHHHH-HHhcCCCEEEE
Confidence 6 6778899999996 9999987 2 255555 99999999995
No 63
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=88.02 E-value=1.6 Score=45.88 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=63.6
Q ss_pred CCEEEEEecccCCCChH--HHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcC
Q 003947 548 KPILFTMARLDRVKNLT--GLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQM 625 (784)
Q Consensus 548 k~iIl~vGRL~~~Kgi~--~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~ 625 (784)
+.+++..|.=.+.|... .+.+.+..+.+ .+++++++++++ +| .+...++.+.. +++.+.|
T Consensus 179 ~~i~l~pga~~~~k~wp~~~~~~l~~~L~~--~~~~vvl~~g~~-------~e---~~~~~~i~~~~---~~~~l~g--- 240 (326)
T 2gt1_A 179 EYAVFLHATTRDDKHWPEEHWRELIGLLAD--SGIRIKLPWGAP-------HE---EERAKRLAEGF---AYVEVLP--- 240 (326)
T ss_dssp SEEEEECCCSSGGGSCCHHHHHHHHHHTTT--TCCEEEECCSSH-------HH---HHHHHHHHTTC---TTEEECC---
T ss_pred CEEEEEeCCCCccccCCHHHHHHHHHHHHH--CCCcEEEecCCH-------HH---HHHHHHHHhhC---CcccccC---
Confidence 34556666545556655 77777777755 368888875442 12 22233333332 2466777
Q ss_pred CcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc
Q 003947 626 NRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT 670 (784)
Q Consensus 626 ~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT 670 (784)
..+..++..+++. +|++|..- .|..=+ |.|+|+|+|+-
T Consensus 241 -~~sl~el~ali~~-a~l~I~~D----SG~~Hl-Aaa~g~P~v~l 278 (326)
T 2gt1_A 241 -KMSLEGVARVLAG-AKFVVSVD----TGLSHL-TAALDRPNITV 278 (326)
T ss_dssp -CCCHHHHHHHHHT-CSEEEEES----SHHHHH-HHHTTCCEEEE
T ss_pred -CCCHHHHHHHHHh-CCEEEecC----CcHHHH-HHHcCCCEEEE
Confidence 6778999999996 99999872 255555 77799999984
No 64
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=83.13 E-value=3.6 Score=48.73 Aligned_cols=134 Identities=10% Similarity=0.026 Sum_probs=73.0
Q ss_pred hhhhccccCCCCCEEEEEecccCCC----C-----hHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHH
Q 003947 537 KEHLCVLKDSSKPILFTMARLDRVK----N-----LTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYG 607 (784)
Q Consensus 537 ~~~~gll~~~~k~iIl~vGRL~~~K----g-----i~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~ 607 (784)
++.+|+ ++++++|+|+-...... | +..-++.+.+. ..+++.+++-..- .+..
T Consensus 529 ~~~~~~--~~~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~li~r~Hp---------------~~~~ 589 (729)
T 3l7i_A 529 RTHLNL--PSDKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKE--LGDDYVILLRMHY---------------LISN 589 (729)
T ss_dssp HHHTTC--CSSCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHH--HTTTEEEEECCCH---------------HHHT
T ss_pred HHHhCC--CCCCeEEEEeeeeeCCccccccccccchhhHHHHHHHH--cCCCeEEEEecCc---------------chhc
Confidence 355676 67899999998765431 1 11112333222 1246776664321 0111
Q ss_pred HHHhcCCCCcEEEccCcCCcCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCc---------cccccc
Q 003947 608 LIDTYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCN---------GGPAEI 678 (784)
Q Consensus 608 li~~l~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~---------GG~~Ei 678 (784)
.....+..+.+.-.. +..++..++. .+|++|. -++-++.|++..++|||.... .|.---
T Consensus 590 ~~~~~~~~~~~~~~~------~~~di~~ll~-~aD~lIT-----DySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d 657 (729)
T 3l7i_A 590 ALDLSGYENFAIDVS------NYNDVSELFL-ISDCLIT-----DYSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMN 657 (729)
T ss_dssp TCCCTTCTTTEEECT------TCSCHHHHHH-TCSEEEE-----SSCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSC
T ss_pred cccccccCCcEEeCC------CCcCHHHHHH-HhCEEEe-----echHHHHhHHhhCCCEEEecCCHHHHhhccCCcccC
Confidence 111112345555443 1236777777 4999995 356699999999999998622 111111
Q ss_pred cccCceEEEECCCCHHHHHHHHHHH
Q 003947 679 IVHGKSGFHIDPYKGDQATGILVDF 703 (784)
Q Consensus 679 I~dg~~G~li~p~d~e~lAe~I~~~ 703 (784)
..+...|-++ .+.+++.++|.+.
T Consensus 658 ~~~~~pg~~~--~~~~eL~~~i~~~ 680 (729)
T 3l7i_A 658 YMEDLPGPIY--TEPYGLAKELKNL 680 (729)
T ss_dssp TTSSSSSCEE--SSHHHHHHHHTTH
T ss_pred hhHhCCCCeE--CCHHHHHHHHhhh
Confidence 1112234444 4778888888643
No 65
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=80.75 E-value=2.5 Score=42.72 Aligned_cols=63 Identities=11% Similarity=0.011 Sum_probs=40.8
Q ss_pred HHHHHHH-ccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcccc--------ccccccCceEEEECCCCHHHHHHHHHH
Q 003947 632 ELYRYIC-DTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGP--------AEIIVHGKSGFHIDPYKGDQATGILVD 702 (784)
Q Consensus 632 el~~~la-~aadvfV~PS~~E~fGltvlEAMA~GlPVIaT~~GG~--------~EiI~dg~~G~li~p~d~e~lAe~I~~ 702 (784)
++..+|+ . +|++|.=+ =..|+.|++++|+|.|.-..... ++.+.+...++.++ ++.++++|.+
T Consensus 124 ~m~~~l~~~-AdlvIsha----GagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~~---~~~L~~~i~~ 195 (224)
T 2jzc_A 124 KMQSIIRDY-SDLVISHA----GTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCA---PTETGLIAGL 195 (224)
T ss_dssp SHHHHHHHH-CSCEEESS----CHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEEC---SCTTTHHHHH
T ss_pred hHHHHHHhc-CCEEEECC----cHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEcC---HHHHHHHHHH
Confidence 5778888 7 99999743 35699999999999999754321 22333323456664 3455555553
No 66
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=72.17 E-value=51 Score=34.60 Aligned_cols=149 Identities=10% Similarity=-0.040 Sum_probs=89.4
Q ss_pred CEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCC-cEEEccCcCCc
Q 003947 549 PILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNG-QFRWISSQMNR 627 (784)
Q Consensus 549 ~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~-~V~flG~~~~~ 627 (784)
+.++.+..=.+.|.+..|+++.++.+. .+++-..|.|.. .+ -....+.+..|+.- .|-|-|
T Consensus 116 ~~~lvv~~ds~~~tl~dL~~~ak~~p~---~~~~g~~g~Gs~---------~h-l~~~~l~~~~Gi~~~~Vpy~G----- 177 (314)
T 2dvz_A 116 ANVVAVNPKFPAKDFKGFLEELKKNPG---KYSYGSSGTCGV---------LH-LMGESFKMATGTDIVHVPYKG----- 177 (314)
T ss_dssp CEEEEECTTSSCSSHHHHHHHHHTSTT---TCEEEESCTTSH---------HH-HHHHHHHHHHTCCCEEEECSS-----
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHhCCC---cEEEeCCCCCcH---------HH-HHHHHHHHHhCCCeEEcccCC-----
Confidence 455555555678999999987765432 355554443321 01 11233445567642 344444
Q ss_pred CChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCc-EEEc----------Ccc-----ccccccccCceEEEECCC
Q 003947 628 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLP-TFAT----------CNG-----GPAEIIVHGKSGFHIDPY 691 (784)
Q Consensus 628 v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlP-VIaT----------~~G-----G~~EiI~dg~~G~li~p~ 691 (784)
..+.+..++....|+.+... -.+.+....|.- +++. +++ |.+.+....-.|++.+++
T Consensus 178 -~~~a~~al~~G~vD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g 250 (314)
T 2dvz_A 178 -SGPAVADAVGGQIELIFDNL------PSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKG 250 (314)
T ss_dssp -HHHHHHHHHHTSSSEEEEEH------HHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETT
T ss_pred -HHHHHHHHHcCCceEEEEcH------HHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCC
Confidence 23567777877788887652 256667777742 3332 111 111221122468889888
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003947 692 KGDQATGILVDFFEKCKVDPGHWDEISQGGL 722 (784)
Q Consensus 692 d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~ 722 (784)
.++++.++|.+.+.+.+.||+..+.+.+.+.
T Consensus 251 ~p~~vv~~l~~al~~~~~~p~~~~~~~~~g~ 281 (314)
T 2dvz_A 251 TPMDVVNKLRDAAVVALKDPKVIKALDDQGS 281 (314)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTE
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 8999999999999999999998877765543
No 67
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=70.97 E-value=54 Score=34.42 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=89.5
Q ss_pred CEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCC-cEEEccCcCCc
Q 003947 549 PILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNG-QFRWISSQMNR 627 (784)
Q Consensus 549 ~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~-~V~flG~~~~~ 627 (784)
+.++.+..=.+.|.+..|+++.++.+. .+++-..|.|.. .+ -....+.+..|+.- .|.|-|
T Consensus 112 ~~~lvv~~ds~~~sl~dL~~~ak~~p~---~~~~g~~g~Gs~---------~h-l~~~~l~~~~Gi~~~~Vpy~G----- 173 (312)
T 2f5x_A 112 PMTIIARGDFPPNNIKELAEYVKKNAD---KISLANAGIGAA---------SH-LCGTMLVEALGVNLLTIPYKG----- 173 (312)
T ss_dssp EEEEEECTTCSCCSHHHHHHHHHHHGG---GCEEEESSTTSH---------HH-HHHHHHHHHHTCCCEEEECSS-----
T ss_pred cEEEEEeCCCCCCCHHHHHHHHHhCCC---ceEEeCCCCCcH---------HH-HHHHHHHHHHCCCeEEeccCC-----
Confidence 445555544578999999998877654 245544443321 01 11233445567642 344444
Q ss_pred CChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCC-cEEEc----------Cccc-----cccccccCceEEEECCC
Q 003947 628 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGL-PTFAT----------CNGG-----PAEIIVHGKSGFHIDPY 691 (784)
Q Consensus 628 v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~Gl-PVIaT----------~~GG-----~~EiI~dg~~G~li~p~ 691 (784)
..+.+..++....|+.+... -++.+.+..|. -+++. +++- .+.+....-.|++.+.+
T Consensus 174 -~~~a~~aL~~G~VD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g 246 (312)
T 2f5x_A 174 -TAPAMNDLLGKQVDLMCDQT------TNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKG 246 (312)
T ss_dssp -HHHHHHHHHTTSSCEEEEEH------HHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETT
T ss_pred -hHHHHHHHHcCCccEEEech------HHHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCC
Confidence 23567777777788877642 24566677774 23332 1111 11121122368888888
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003947 692 KGDQATGILVDFFEKCKVDPGHWDEISQGGL 722 (784)
Q Consensus 692 d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~ 722 (784)
.++++.++|.+.+.+.+.||+..+.+.+.+.
T Consensus 247 ~p~~vv~~l~~al~~~~~~p~~~~~~~~~g~ 277 (312)
T 2f5x_A 247 TPKPVVDKLVKSLQAGLADPKFQERMKQLGA 277 (312)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 8899999999999999999998877755443
No 68
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=64.93 E-value=37 Score=35.37 Aligned_cols=149 Identities=15% Similarity=0.063 Sum_probs=86.6
Q ss_pred CEEEEEecccCCCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCC-CcEEEccCcCCc
Q 003947 549 PILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLN-GQFRWISSQMNR 627 (784)
Q Consensus 549 ~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~-~~V~flG~~~~~ 627 (784)
+.++.+..=.+.|.+..|+++.++.+. .+++-..|.|.. .+ -....+.+..|+. .+|.|-|
T Consensus 103 ~~~lvv~~~s~~~sl~dL~~~ak~~p~---~~~~g~~g~Gs~---------~h-l~~~~l~~~~G~~~~~Vpy~g----- 164 (301)
T 2qpq_A 103 PSVFVVPAGSKYKTLGELMAAAKQTNT---QVTYGSCGNGTP---------QH-LAGELLNVSAKTHMVHVPYKG----- 164 (301)
T ss_dssp EEEEEEETTCSCCSHHHHHHHTCSSSC---CCEEEESSTTSH---------HH-HHHHHHHHHHTCCCEEEECSS-----
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCC---ceEEecCCCCcH---------HH-HHHHHHHHHhCCCeEEeccCC-----
Confidence 344555444578999998877644321 344444443321 11 1122344456764 2344444
Q ss_pred CChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCc-EEE-c---------Ccc-----ccccccccCceEEEECCC
Q 003947 628 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLP-TFA-T---------CNG-----GPAEIIVHGKSGFHIDPY 691 (784)
Q Consensus 628 v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMA~GlP-VIa-T---------~~G-----G~~EiI~dg~~G~li~p~ 691 (784)
..+.+..++....|+.+... -++.+.+..|.- +++ + +++ |...+....-.|++.+.+
T Consensus 165 -~~~a~~al~~G~vD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g 237 (301)
T 2qpq_A 165 -CGPALNDVLGSQIGLAVVTA------SSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGA 237 (301)
T ss_dssp -HHHHHHHHHTTSSSCEEEEH------HHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETT
T ss_pred -hHHHHHHHHCCCccEEEEcH------HHHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCC
Confidence 23467777777788777642 245667777752 232 2 111 111121122468888888
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003947 692 KGDQATGILVDFFEKCKVDPGHWDEISQGGL 722 (784)
Q Consensus 692 d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~ 722 (784)
.++++.++|.+.+.+.+.||+..+.+.+.+.
T Consensus 238 ~p~~vv~~l~~al~~~~~~~~~~~~~~~~g~ 268 (301)
T 2qpq_A 238 TPMAVRQKLYDGIAKVMQRDDVQKKLADLGY 268 (301)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 7899999999999999999998887765543
No 69
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=63.74 E-value=72 Score=28.32 Aligned_cols=108 Identities=10% Similarity=0.140 Sum_probs=71.2
Q ss_pred eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH----------ccccEEEeCC-
Q 003947 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC----------DTKGAFVQPA- 648 (784)
Q Consensus 580 v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la----------~aadvfV~PS- 648 (784)
.+++||.+.+ ...+.+....++.+..-.|.... +..+..+.+. ...|++++-.
T Consensus 5 ~~ILivddd~----------~~~~~l~~~L~~~g~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~~~dliilD~~ 68 (152)
T 3heb_A 5 VTIVMIEDDL----------GHARLIEKNIRRAGVNNEIIAFT------DGTSALNYLFGDDKSGRVSAGRAQLVLLDLN 68 (152)
T ss_dssp CEEEEECCCH----------HHHHHHHHHHHHTTCCCCEEEES------SHHHHHHHHHCTTSSSGGGTTCBEEEEECSB
T ss_pred ceEEEEeCCH----------HHHHHHHHHHHhCCCcceEEEeC------CHHHHHHHHhccccccccccCCCCEEEEeCC
Confidence 5778887652 33456777777777654566653 3456666663 2356776643
Q ss_pred CCCCCcHHHHHHHHc-----CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHH
Q 003947 649 LYEAFGLTVVEAMTC-----GLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDF 703 (784)
Q Consensus 649 ~~E~fGltvlEAMA~-----GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~ 703 (784)
..+.-|+.+++.+.. ++|+|+. .... ..+.+..|..+++..|.+.+++.++|.++
T Consensus 69 l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 69 LPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQL 132 (152)
T ss_dssp CSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 245567788877654 6788774 3333 23455678899999999999999988754
No 70
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=62.80 E-value=74 Score=27.32 Aligned_cols=109 Identities=8% Similarity=0.035 Sum_probs=70.2
Q ss_pred eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc--------cccEEEeCCC-C
Q 003947 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD--------TKGAFVQPAL-Y 650 (784)
Q Consensus 580 v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~--------aadvfV~PS~-~ 650 (784)
.+++|+.+.+ ...+.+....++.|....|.... +..+....+.. ..|++++-.. .
T Consensus 3 ~~ilivdd~~----------~~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~ 66 (140)
T 1k68_A 3 KKIFLVEDNK----------ADIRLIQEALANSTVPHEVVTVR------DGMEAMAYLRQEGEYANASRPDLILLXLNLP 66 (140)
T ss_dssp CEEEEECCCH----------HHHHHHHHHHHTCSSCCEEEEEC------SHHHHHHHHTTCGGGGSCCCCSEEEECSSCS
T ss_pred CeEEEEeCCH----------HHHHHHHHHHHhcCCCceEEEEC------CHHHHHHHHHcccccccCCCCcEEEEecCCC
Confidence 4677777652 33455667777666543555543 34566666653 4677776443 3
Q ss_pred CCCcHHHHHHHH-----cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 651 EAFGLTVVEAMT-----CGLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 651 E~fGltvlEAMA-----~GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
+.-|+.+++.+. .++|+|+. .... ..+....|..+++..|-+.+++...|..++
T Consensus 67 ~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 67 KKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp SSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHH
Confidence 445777777665 46788764 3332 244455688999999999999999997655
No 71
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=61.12 E-value=62 Score=28.40 Aligned_cols=111 Identities=13% Similarity=0.137 Sum_probs=71.5
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCC-CCCCcHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGlt 656 (784)
..+++||.+.+ ...+.+....++.+..-.|.... +..+..+.+.. ..|++++-.. .+.-|+.
T Consensus 5 ~~~ILivdd~~----------~~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~ 68 (144)
T 3kht_A 5 SKRVLVVEDNP----------DDIALIRRVLDRKDIHCQLEFVD------NGAKALYQVQQAKYDLIILDIGLPIANGFE 68 (144)
T ss_dssp CEEEEEECCCH----------HHHHHHHHHHHHTTCCEEEEEES------SHHHHHHHHTTCCCSEEEECTTCGGGCHHH
T ss_pred CCEEEEEeCCH----------HHHHHHHHHHHhcCCCeeEEEEC------CHHHHHHHhhcCCCCEEEEeCCCCCCCHHH
Confidence 46788887652 33456677777776543354443 34456665543 3467766433 3445777
Q ss_pred HHHHHHc-----CCcEEEc-Cccc---cccccccCceEEEECCC-CHHHHHHHHHHHHH
Q 003947 657 VVEAMTC-----GLPTFAT-CNGG---PAEIIVHGKSGFHIDPY-KGDQATGILVDFFE 705 (784)
Q Consensus 657 vlEAMA~-----GlPVIaT-~~GG---~~EiI~dg~~G~li~p~-d~e~lAe~I~~~l~ 705 (784)
+++.+.. ++|+|+. .... ..+.+..|..+++..|. +.+++.++|..+++
T Consensus 69 ~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 69 VMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp HHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 8877764 6788874 3322 23455678899999999 99999999987664
No 72
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=59.21 E-value=90 Score=27.14 Aligned_cols=111 Identities=11% Similarity=0.130 Sum_probs=70.8
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH-----------ccccEEEeC
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC-----------DTKGAFVQP 647 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la-----------~aadvfV~P 647 (784)
..+++|+.+.+ ...+.+....++.+....|.... +..+....+. ...|++++=
T Consensus 6 ~~~iLivdd~~----------~~~~~l~~~L~~~g~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~~~~dlvi~D 69 (149)
T 1k66_A 6 TQPLLVVEDSD----------EDFSTFQRLLQREGVVNPIYRCI------TGDQALDFLYQTGSYCNPDIAPRPAVILLD 69 (149)
T ss_dssp TSCEEEECCCH----------HHHHHHHHHHHHTTBCSCEEEEC------SHHHHHHHHHTCCSSSCGGGCCCCSEEEEC
T ss_pred CccEEEEECCH----------HHHHHHHHHHHHcCCCceEEEEC------CHHHHHHHHHhcccccCcccCCCCcEEEEE
Confidence 35677777652 23455666677766533455543 3456666665 346777764
Q ss_pred CC-CCCCcHHHHHHHH-----cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHHH
Q 003947 648 AL-YEAFGLTVVEAMT-----CGLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFFE 705 (784)
Q Consensus 648 S~-~E~fGltvlEAMA-----~GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~ 705 (784)
.. .+.-|+.+++.+. ..+|+|+. .... ..+.+..|..+++..|.+.+++.+.|..+++
T Consensus 70 ~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 70 LNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp SCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 33 3445777777775 45787774 3332 2344557889999999999999999876553
No 73
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=52.80 E-value=6.6 Score=40.39 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=25.8
Q ss_pred eEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecC
Q 003947 255 FNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRL 316 (784)
Q Consensus 255 mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~ 316 (784)
|||+|..-.|+.|. .|+++|.++||+|. +++|.
T Consensus 1 MkILVTGatGfIG~-------------------------~L~~~L~~~G~~V~----~l~R~ 33 (298)
T 4b4o_A 1 MRVLVGGGTGFIGT-------------------------ALTQLLNARGHEVT----LVSRK 33 (298)
T ss_dssp CEEEEETTTSHHHH-------------------------HHHHHHHHTTCEEE----EEESS
T ss_pred CEEEEECCCCHHHH-------------------------HHHHHHHHCCCEEE----EEECC
Confidence 79998876666431 56778899999998 88875
No 74
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=51.58 E-value=5.7 Score=40.41 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=25.1
Q ss_pred CcceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecC
Q 003947 252 PRVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRL 316 (784)
Q Consensus 252 p~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~ 316 (784)
+|+|||+|... |+.|. .++++|.++||+|. +++|.
T Consensus 3 ~m~~~ilVtGa-G~iG~-------------------------~l~~~L~~~g~~V~----~~~r~ 37 (286)
T 3ius_A 3 AMTGTLLSFGH-GYTAR-------------------------VLSRALAPQGWRII----GTSRN 37 (286)
T ss_dssp --CCEEEEETC-CHHHH-------------------------HHHHHHGGGTCEEE----EEESC
T ss_pred CCcCcEEEECC-cHHHH-------------------------HHHHHHHHCCCEEE----EEEcC
Confidence 57899999875 66331 56677889999998 88875
No 75
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=51.19 E-value=91 Score=26.97 Aligned_cols=106 Identities=6% Similarity=0.030 Sum_probs=63.6
Q ss_pred CCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH-ccccEEEeCCCCCCCcHH
Q 003947 578 ELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPALYEAFGLT 656 (784)
Q Consensus 578 ~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS~~E~fGlt 656 (784)
...+++|+.+.+ ...+.+....+..|. .|.... +..+....+. ...|++++| +.-|+.
T Consensus 17 ~~~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlvi~~---~~~g~~ 75 (137)
T 2pln_A 17 GSMRVLLIEKNS----------VLGGEIEKGLNVKGF--MADVTE------SLEDGEYLMDIRNYDLVMVS---DKNALS 75 (137)
T ss_dssp TCSEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------CHHHHHHHHHHSCCSEEEEC---STTHHH
T ss_pred CCCeEEEEeCCH----------HHHHHHHHHHHHcCc--EEEEeC------CHHHHHHHHHcCCCCEEEEc---CccHHH
Confidence 345777777652 233455566666554 344332 2344555443 235777733 344666
Q ss_pred HHHHHH--c-CCcEEEc-Cccc---cccccccCceEEEECCC-CHHHHHHHHHHHH
Q 003947 657 VVEAMT--C-GLPTFAT-CNGG---PAEIIVHGKSGFHIDPY-KGDQATGILVDFF 704 (784)
Q Consensus 657 vlEAMA--~-GlPVIaT-~~GG---~~EiI~dg~~G~li~p~-d~e~lAe~I~~~l 704 (784)
+++.+. . .+|+|+. .... ..+.+..|..+++..|. +.+++..+|..++
T Consensus 76 ~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 76 FVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARL 131 (137)
T ss_dssp HHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHH
Confidence 666554 3 7888774 3332 34455678899999999 9999999887543
No 76
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=50.11 E-value=95 Score=27.17 Aligned_cols=109 Identities=9% Similarity=0.110 Sum_probs=67.9
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCC-CCCCcHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGlt 656 (784)
..+++|+.+.+. ..+.+....+..|. .|.... +..+....+.. ..|++++-.. .+.-|+.
T Consensus 8 ~~~iLivd~~~~----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~ 69 (147)
T 2zay_A 8 WWRIMLVDTQLP----------ALAASISALSQEGF--DIIQCG------NAIEAVPVAVKTHPHLIITEANMPKISGMD 69 (147)
T ss_dssp CEEEEEECTTGG----------GGHHHHHHHHHHTE--EEEEES------SHHHHHHHHHHHCCSEEEEESCCSSSCHHH
T ss_pred CceEEEEeCCHH----------HHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHHcCCCCEEEEcCCCCCCCHHH
Confidence 467888877643 22445555555553 344332 23455555432 3577776433 3455778
Q ss_pred HHHHHHc-----CCcEEE-cCcccc---ccccccCceEEEECCCCHHHHHHHHHHHHH
Q 003947 657 VVEAMTC-----GLPTFA-TCNGGP---AEIIVHGKSGFHIDPYKGDQATGILVDFFE 705 (784)
Q Consensus 657 vlEAMA~-----GlPVIa-T~~GG~---~EiI~dg~~G~li~p~d~e~lAe~I~~~l~ 705 (784)
+++.+.. ++|+|+ |..... .+.+..|..+++..|.+.+++..+|..++.
T Consensus 70 ~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 70 LFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp HHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 8887764 678876 443332 334467889999999999999999987664
No 77
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=49.63 E-value=1.1e+02 Score=26.42 Aligned_cols=107 Identities=7% Similarity=0.083 Sum_probs=68.8
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH-------ccccEEEeCCC-C
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC-------DTKGAFVQPAL-Y 650 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la-------~aadvfV~PS~-~ 650 (784)
..+++|+.+.+ ...+.+....++.+....|.... +..+....+. ...|++++-.. .
T Consensus 7 ~~~ILivdd~~----------~~~~~l~~~L~~~g~~~~v~~~~------~~~~a~~~l~~~~~~~~~~~dlii~D~~l~ 70 (143)
T 2qvg_A 7 KVDILYLEDDE----------VDIQSVERVFHKISSLIKIEIAK------SGNQALDMLYGRNKENKIHPKLILLDINIP 70 (143)
T ss_dssp CCSEEEECCCH----------HHHHHHHHHHHHHCTTCCEEEES------SHHHHHHHHHTCTTCCCCCCSEEEEETTCT
T ss_pred CCeEEEEeCCH----------HHHHHHHHHHHHhCCCceEEEEC------CHHHHHHHHHhcccccCCCCCEEEEecCCC
Confidence 35677777652 33455667777776544566554 3456666665 24677776433 3
Q ss_pred CCCcHHHHHHHH-----cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHH
Q 003947 651 EAFGLTVVEAMT-----CGLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILV 701 (784)
Q Consensus 651 E~fGltvlEAMA-----~GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~ 701 (784)
+.-|+.+++.+. ..+|+|+. .... ..+....|..+++..|.+.+++.+++.
T Consensus 71 ~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~ 130 (143)
T 2qvg_A 71 KMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFW 130 (143)
T ss_dssp TSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHH
Confidence 445777777775 46787774 3332 344556788999999999999888865
No 78
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=49.38 E-value=2.1e+02 Score=28.35 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=100.7
Q ss_pred EEEEEecccCCCChHHHHHHHHHhHccCCCe-EEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCc----
Q 003947 550 ILFTMARLDRVKNLTGLVEWYGKNAKLRELV-NLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQ---- 624 (784)
Q Consensus 550 iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v-~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~---- 624 (784)
+=-++||-..+||.-.+.+.-.+..+ |.- .-|+-|-. .+ + -.-.+++-|++ ..+.|.+
T Consensus 199 inrwigrtttwkgfyqmfdfhekflk--pagkstvmegle-rs----p--------afiaikekgip--yeyygnreidk 261 (401)
T 1xv5_A 199 INRWIGRTTTWKGFYQMFDFHEKFLK--PAGKSTVMEGLE-RS----P--------AFIAIKEKGIP--YEYYGNREIDK 261 (401)
T ss_dssp EEEEECCSCGGGCHHHHHHHHHHTTT--TTTCEEEEECCC-CS----H--------HHHHHHHTTCC--EEEECGGGGGG
T ss_pred hhhhhcccchhHhHHHHhhHHHHhcC--ccchhhhhhhhh-cC----C--------ceEEEcccCCc--hhhcCcchhhh
Confidence 44589999999999999988777654 322 33343322 11 1 11123344442 2222211
Q ss_pred -----------CCcCChhHHHHHHHccccEEEeCCC------CCCCcHHHHHHHHcCC-cEEEcCccccccccc------
Q 003947 625 -----------MNRVRNGELYRYICDTKGAFVQPAL------YEAFGLTVVEAMTCGL-PTFATCNGGPAEIIV------ 680 (784)
Q Consensus 625 -----------~~~v~~~el~~~la~aadvfV~PS~------~E~fGltvlEAMA~Gl-PVIaT~~GG~~EiI~------ 680 (784)
.+-.-+.++..-+.. ++..-+-|. ..+.-.+-+|--|||+ ||+--..|....+-.
T Consensus 262 mnlapnqpaqildcyinsemlermsk-sgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntplt 340 (401)
T 1xv5_A 262 MNLAPNQPAQILDCYINSEMLERMSK-SGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLT 340 (401)
T ss_dssp CCCSSSCCEEEESCCCHHHHHHHHHT-EEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGG
T ss_pred hcCCCCCcchhhhheecHHHHHHhhh-cCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCccc
Confidence 012335678887885 666666654 3456788999999997 666544443222211
Q ss_pred cCceEE-EECCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Q 003947 681 HGKSGF-HIDPYKGDQATGILVDFFEKCKVDPGHWDEISQGGLKRIQEKYTWKIYSE 736 (784)
Q Consensus 681 dg~~G~-li~p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~~a~~~v~~~ytw~~~a~ 736 (784)
...+|+ .++.+|.+..-+.|. .+.+|..++.+-.+.|.+...++-+-.-..+
T Consensus 341 shdsgiiwfdendmestferik----elssdralydrerekayeflyqhqdssfcfk 393 (401)
T 1xv5_A 341 SHDSGIIWFDENDMESTFERIK----ELSSDRALYDREREKAYEFLYQHQDSSFCFK 393 (401)
T ss_dssp GSCCSCEEECTTCHHHHHHHHH----HHHTCHHHHHHHHHHHHHHHHHHHBHHHHHH
T ss_pred ccCCceEEecCCchHHHHHHHH----HhccchhhhhHHHHHHHHHHHhcccccchhH
Confidence 123454 589999999999997 4668999988888888887766554443333
No 79
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=44.98 E-value=1.4e+02 Score=26.49 Aligned_cols=111 Identities=11% Similarity=0.162 Sum_probs=70.2
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCC-CCCCcHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGlt 656 (784)
..+++||.+.+ ...+.+....++.|. .|.... +..+..+.+.. ..|++++-.. ...-|+.
T Consensus 7 ~~~ILivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlii~D~~l~~~~g~~ 68 (154)
T 3gt7_A 7 AGEILIVEDSP----------TQAEHLKHILEETGY--QTEHVR------NGREAVRFLSLTRPDLIISDVLMPEMDGYA 68 (154)
T ss_dssp CCEEEEECSCH----------HHHHHHHHHHHTTTC--EEEEES------SHHHHHHHHTTCCCSEEEEESCCSSSCHHH
T ss_pred CCcEEEEeCCH----------HHHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 45778887652 234556666666653 344332 34556666542 3467666433 4455777
Q ss_pred HHHHHH-----cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHHHHh
Q 003947 657 VVEAMT-----CGLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFFEKC 707 (784)
Q Consensus 657 vlEAMA-----~GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~~l 707 (784)
+++.+- ..+|+|+. .... ..+.+..|..+++..|.+.+++..+|..++...
T Consensus 69 ~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 69 LCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp HHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 777765 46788774 3333 234456788999999999999999998777543
No 80
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=42.65 E-value=1.6e+02 Score=25.27 Aligned_cols=109 Identities=8% Similarity=0.064 Sum_probs=69.1
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH-ccccEEEeCCC-CCCCcHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPAL-YEAFGLT 656 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS~-~E~fGlt 656 (784)
..+++|+.+.+ ...+.+....++.|. .|.... +..+..+.+. ...|++++-.. .+.-|+.
T Consensus 6 ~~~iLivdd~~----------~~~~~l~~~l~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~ 67 (140)
T 3grc_A 6 RPRILICEDDP----------DIARLLNLMLEKGGF--DSDMVH------SAAQALEQVARRPYAAMTVDLNLPDQDGVS 67 (140)
T ss_dssp CSEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEEC------SHHHHHHHHHHSCCSEEEECSCCSSSCHHH
T ss_pred CCCEEEEcCCH----------HHHHHHHHHHHHCCC--eEEEEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 35777777652 234556666666654 244432 2345555553 33577776433 4556777
Q ss_pred HHHHHHc-----CCcEEEc-Ccccc---c-cccccCceEEEECCCCHHHHHHHHHHHHH
Q 003947 657 VVEAMTC-----GLPTFAT-CNGGP---A-EIIVHGKSGFHIDPYKGDQATGILVDFFE 705 (784)
Q Consensus 657 vlEAMA~-----GlPVIaT-~~GG~---~-EiI~dg~~G~li~p~d~e~lAe~I~~~l~ 705 (784)
+++.+.. .+|+|.. ..... . +.+..|..+++..|.+.+++..+|...++
T Consensus 68 ~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 68 LIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp HHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 8877664 6788874 33322 2 55667889999999999999999987664
No 81
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=41.54 E-value=1.7e+02 Score=25.16 Aligned_cols=108 Identities=8% Similarity=0.098 Sum_probs=67.9
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCC-CCCCcHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGlt 656 (784)
..+++|+.+.+ ...+.+....+..|. +|.... +..+....+.. ..|++++-.. .+.-|+.
T Consensus 7 ~~~iLivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~ 68 (142)
T 3cg4_A 7 KGDVMIVDDDA----------HVRIAVKTILSDAGF--HIISAD------SGGQCIDLLKKGFSGVVLLDIMMPGMDGWD 68 (142)
T ss_dssp CCEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTCCCEEEEEESCCSSSCHHH
T ss_pred CCeEEEEcCCH----------HHHHHHHHHHHHCCe--EEEEeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 46788887652 234556666666654 344432 34456665543 2466665433 3456777
Q ss_pred HHHHHHc-----CCcEEEc-Ccc---ccccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 657 VVEAMTC-----GLPTFAT-CNG---GPAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 657 vlEAMA~-----GlPVIaT-~~G---G~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
+++.+.. .+|+|+. ... ...+.+..|..+++..|.+.+++.+.|..++
T Consensus 69 ~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 69 TIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp HHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 7777754 5677763 332 2345556788899999999999999997655
No 82
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=41.17 E-value=1.5e+02 Score=26.17 Aligned_cols=75 Identities=9% Similarity=0.004 Sum_probs=47.7
Q ss_pred hhHHHHHHHc-cccEEEeCCC-CCCCcHHHHHHHHc---CCcEEEc-Ccc---ccccccccCceEEEECCCCHHHHHHHH
Q 003947 630 NGELYRYICD-TKGAFVQPAL-YEAFGLTVVEAMTC---GLPTFAT-CNG---GPAEIIVHGKSGFHIDPYKGDQATGIL 700 (784)
Q Consensus 630 ~~el~~~la~-aadvfV~PS~-~E~fGltvlEAMA~---GlPVIaT-~~G---G~~EiI~dg~~G~li~p~d~e~lAe~I 700 (784)
..+..+.+.. ..|++++-.. .+.-|+.+++.+.. .+|+|+. ... ...+.+..|..+++..|.+.+++.++|
T Consensus 55 ~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 134 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTL 134 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHH
Confidence 3455555432 2466665432 34456666666543 5777763 333 234556678899999999999999999
Q ss_pred HHHH
Q 003947 701 VDFF 704 (784)
Q Consensus 701 ~~~l 704 (784)
...+
T Consensus 135 ~~~~ 138 (150)
T 4e7p_A 135 HTVL 138 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 83
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=40.76 E-value=20 Score=34.66 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=23.6
Q ss_pred cceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHH-HHHcCCCcc
Q 003947 253 RVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLR-IKQQGLDIT 307 (784)
Q Consensus 253 ~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~-L~~~GheV~ 307 (784)
|||||++|+ |+|..+|.... +.+.+++. +.+.|++|+
T Consensus 1 mMmkilii~-----------gS~r~~g~t~~-------la~~i~~~~l~~~g~~v~ 38 (197)
T 2vzf_A 1 MTYSIVAIS-----------GSPSRNSTTAK-------LAEYALAHVLARSDSQGR 38 (197)
T ss_dssp CCEEEEEEE-----------CCSSTTCHHHH-------HHHHHHHHHHHHSSEEEE
T ss_pred CCceEEEEE-----------CCCCCCChHHH-------HHHHHHHHHHHHCCCeEE
Confidence 568999985 33444453333 23356677 788898887
No 84
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=40.46 E-value=2e+02 Score=29.24 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=26.1
Q ss_pred ceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCCC
Q 003947 254 VFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLLP 318 (784)
Q Consensus 254 ~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~~ 318 (784)
+|||++....|+..+ .+. .|++.|++.| +|. |+++...
T Consensus 1 ~M~ILlTNDDGi~ap--------------Gi~--------aL~~~l~~~g-~V~----VVAP~~~ 38 (251)
T 2phj_A 1 MPTFLLVNDDGYFSP--------------GIN--------ALREALKSLG-RVV----VVAPDRN 38 (251)
T ss_dssp -CEEEEECSSCTTCH--------------HHH--------HHHHHHTTTS-EEE----EEEESSC
T ss_pred CCEEEEECCCCCCCH--------------HHH--------HHHHHHHhcC-CEE----EEecCCC
Confidence 389999998887432 255 4455667788 887 8887643
No 85
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=40.25 E-value=1.9e+02 Score=25.42 Aligned_cols=112 Identities=11% Similarity=0.040 Sum_probs=64.5
Q ss_pred CCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH-ccccEEEeCC-CCCCCcH
Q 003947 578 ELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPA-LYEAFGL 655 (784)
Q Consensus 578 ~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fGl 655 (784)
...+++|+.+.+ ...+.+....++.+....|.... +..+..+.+. ...|++++-. ..+.-|+
T Consensus 14 ~~~~iLivdd~~----------~~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 77 (152)
T 3eul_A 14 EKVRVVVGDDHP----------LFREGVVRALSLSGSVNVVGEAD------DGAAALELIKAHLPDVALLDYRMPGMDGA 77 (152)
T ss_dssp CCEEEEEECSSH----------HHHHHHHHHHHHHSSEEEEEEES------SHHHHHHHHHHHCCSEEEEETTCSSSCHH
T ss_pred ceEEEEEEcCCH----------HHHHHHHHHHhhCCCeEEEEEeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 356777777652 23344555555554211122221 2334444442 2356666543 3445567
Q ss_pred HHHHHHH---cCCcEEE-cCccc---cccccccCceEEEECCCCHHHHHHHHHHHHH
Q 003947 656 TVVEAMT---CGLPTFA-TCNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFFE 705 (784)
Q Consensus 656 tvlEAMA---~GlPVIa-T~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~ 705 (784)
.+++.+. ..+|+|+ |.... ..+.+..|..|++..|.+.+++.++|...+.
T Consensus 78 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 78 QVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp HHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHc
Confidence 7766654 3567776 33333 2345567889999999999999999986653
No 86
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=37.94 E-value=2.1e+02 Score=25.11 Aligned_cols=110 Identities=6% Similarity=0.038 Sum_probs=66.8
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc--------cccEEEeCCC-
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD--------TKGAFVQPAL- 649 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~--------aadvfV~PS~- 649 (784)
..+++||.+.+ ...+.+....+..+..-.|.... +..+..+.+.. ..|++++=..
T Consensus 8 ~~~ILivdd~~----------~~~~~l~~~L~~~~~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~dlillD~~l 71 (149)
T 1i3c_A 8 PKVILLVEDSK----------ADSRLVQEVLKTSTIDHELIILR------DGLAAMAFLQQQGEYENSPRPNLILLDLNL 71 (149)
T ss_dssp CEEEEEECCCH----------HHHHHHHHHHHSCCSCEEEEEEC------SHHHHHHHHTTCGGGTTCCCCSEEEECSCC
T ss_pred CCeEEEEECCH----------HHHHHHHHHHHhcCCCccEEEeC------CHHHHHHHHHhccccccCCCCCEEEEeCCC
Confidence 46777877652 23344555666554322344332 24566666652 3577776433
Q ss_pred CCCCcHHHHHHHH-----cCCcEEE-cCccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 650 YEAFGLTVVEAMT-----CGLPTFA-TCNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 650 ~E~fGltvlEAMA-----~GlPVIa-T~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
...-|+.+++.+. ..+|+|+ |..+. ..+.+..|..|++..|.+.+++.++|..+.
T Consensus 72 p~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 72 PKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp SSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 2345777777764 3568776 44333 244456788999999999999999887554
No 87
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=37.76 E-value=2e+02 Score=24.77 Aligned_cols=111 Identities=5% Similarity=-0.018 Sum_probs=67.4
Q ss_pred CCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH------ccccEEEeCCC-C
Q 003947 578 ELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC------DTKGAFVQPAL-Y 650 (784)
Q Consensus 578 ~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la------~aadvfV~PS~-~ 650 (784)
...+++||.+.+ ...+.+....+..+....|.... +..+..+.+. ...|++++-.. .
T Consensus 8 ~~~~iLivdd~~----------~~~~~l~~~l~~~~~~~~v~~~~------~~~~a~~~l~~~~~~~~~~dlvi~D~~l~ 71 (146)
T 3ilh_A 8 KIDSVLLIDDDD----------IVNFLNTTIIRMTHRVEEIQSVT------SGNAAINKLNELYAAGRWPSIICIDINMP 71 (146)
T ss_dssp CEEEEEEECSCH----------HHHHHHHHHHHTTCCEEEEEEES------SHHHHHHHHHHHHTSSCCCSEEEEESSCS
T ss_pred ccceEEEEeCCH----------HHHHHHHHHHHhcCCCeeeeecC------CHHHHHHHHHHhhccCCCCCEEEEcCCCC
Confidence 346788887652 23345566666555322344432 3455666654 23677776433 4
Q ss_pred CCCcHHHHHHHHc-------CCcEEEc-Cccc---cccccccC-ceEEEECCCCHHHHHHHHHHHH
Q 003947 651 EAFGLTVVEAMTC-------GLPTFAT-CNGG---PAEIIVHG-KSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 651 E~fGltvlEAMA~-------GlPVIaT-~~GG---~~EiI~dg-~~G~li~p~d~e~lAe~I~~~l 704 (784)
+.-|+.+++.+.. .+|+|.. .... ..+....| ..+++..|-+.+++.++|....
T Consensus 72 ~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~ 137 (146)
T 3ilh_A 72 GINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVL 137 (146)
T ss_dssp SSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHH
Confidence 5567777776654 6777764 3332 23344566 8899999999999999997543
No 88
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=37.73 E-value=2e+02 Score=24.85 Aligned_cols=107 Identities=10% Similarity=0.116 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc--cccEEEeCCCC-C-CCcH
Q 003947 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD--TKGAFVQPALY-E-AFGL 655 (784)
Q Consensus 580 v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~~-E-~fGl 655 (784)
.+++|+.+.+ ...+.+....++.|. .|.... +..+....+.. ..|++++-... + .-|+
T Consensus 6 ~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~ 67 (140)
T 3h5i_A 6 KKILIVEDSK----------FQAKTIANILNKYGY--TVEIAL------TGEAAVEKVSGGWYPDLILMDIELGEGMDGV 67 (140)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTTCCCSEEEEESSCSSSCCHH
T ss_pred cEEEEEeCCH----------HHHHHHHHHHHHcCC--EEEEec------ChHHHHHHHhcCCCCCEEEEeccCCCCCCHH
Confidence 5777887652 234556666776664 344332 34566666643 35777765432 3 4567
Q ss_pred HHHHHHH--cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 656 TVVEAMT--CGLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 656 tvlEAMA--~GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
.+++.+. ..+|+|+. .... ..+.+..|..+++..|.+.+++.++|...+
T Consensus 68 ~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 68 QTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp HHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 7666654 47888873 3332 345566788999999999999999997655
No 89
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=37.50 E-value=1.9e+02 Score=24.56 Aligned_cols=108 Identities=14% Similarity=0.237 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH-c-cccEEEeCC-CCCCCcHH
Q 003947 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC-D-TKGAFVQPA-LYEAFGLT 656 (784)
Q Consensus 580 v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la-~-aadvfV~PS-~~E~fGlt 656 (784)
.+++||.+.+ ...+.+....++.|.. .+.... +..+....+. . ..|+++.-. ..+.-|+.
T Consensus 6 ~~iLivdd~~----------~~~~~l~~~L~~~g~~-~v~~~~------~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~ 68 (129)
T 3h1g_A 6 MKLLVVDDSS----------TMRRIIKNTLSRLGYE-DVLEAE------HGVEAWEKLDANADTKVLITDWNMPEMNGLD 68 (129)
T ss_dssp CCEEEECSCH----------HHHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHHHCTTCCEEEECSCCSSSCHHH
T ss_pred cEEEEEeCCH----------HHHHHHHHHHHHcCCc-EEEEeC------CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHH
Confidence 4677777652 3345566667776653 243332 2344444443 2 257777533 24455788
Q ss_pred HHHHHHc-----CCcEEE-cCcccc---ccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 657 VVEAMTC-----GLPTFA-TCNGGP---AEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 657 vlEAMA~-----GlPVIa-T~~GG~---~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
+++.+-. .+|+|+ |..+.. .+.+..|..+++..|-+.+++.++|...+
T Consensus 69 ~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 69 LVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp HHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHh
Confidence 8887753 578877 444333 34556788999999999999999997544
No 90
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=36.99 E-value=2.5e+02 Score=25.81 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=21.1
Q ss_pred CCCceEEEEcCCChhHHHHHHHHhCCCcEEEEe
Q 003947 381 QCKPDLIIGNYSDGNIVASLLAHKLDVTQCTIA 413 (784)
Q Consensus 381 ~~~pDIIh~~~~~~~lva~llar~~gvp~V~t~ 413 (784)
..++-+|+|+ |.|+.+|..++.+........+
T Consensus 60 ~~~~i~l~G~-SmGG~~a~~~a~~~~~~~~~~~ 91 (202)
T 4fle_A 60 AGQSIGIVGS-SLGGYFATWLSQRFSIPAVVVN 91 (202)
T ss_dssp TTSCEEEEEE-THHHHHHHHHHHHTTCCEEEES
T ss_pred CCCcEEEEEE-ChhhHHHHHHHHHhcccchhee
Confidence 4456666675 5677888888887776655443
No 91
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=36.62 E-value=1.3e+02 Score=29.84 Aligned_cols=41 Identities=39% Similarity=0.624 Sum_probs=24.4
Q ss_pred ceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecCC
Q 003947 254 VFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRLL 317 (784)
Q Consensus 254 ~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~~ 317 (784)
|++|++|++|.- ..++| .||. ...++++|++|. |+++|...
T Consensus 1 m~~vL~v~aHPD---De~l~---~ggt---------------ia~~~~~G~~v~--vv~lT~G~ 41 (227)
T 1uan_A 1 MLDLLVVAPHPD---DGELG---CGGT---------------LARAKAEGLSTG--ILDLTRGE 41 (227)
T ss_dssp CEEEEEEESSTT---HHHHH---HHHH---------------HHHHHHTTCCEE--EEEEECCT
T ss_pred CceEEEEEeCCC---cHHHh---HHHH---------------HHHHHhCCCcEE--EEEEcCCC
Confidence 478999999963 11221 2331 123568999997 55555543
No 92
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=35.81 E-value=1.3e+02 Score=26.31 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=42.9
Q ss_pred cccEEEeCCC-CCCCcHHHHHHHH---cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHHH
Q 003947 640 TKGAFVQPAL-YEAFGLTVVEAMT---CGLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFFE 705 (784)
Q Consensus 640 aadvfV~PS~-~E~fGltvlEAMA---~GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l~ 705 (784)
..|++++-.. .+.-|+.+++.+. ..+|+|+. .... ..+.+..|..+++..|.+.+++..+|..+++
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 4566666432 2334555555543 36788773 3332 3445567889999999999999999986653
No 93
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=34.96 E-value=3.4e+02 Score=27.44 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhHccCCCe-EEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHccc
Q 003947 563 LTGLVEWYGKNAKLRELV-NLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDTK 641 (784)
Q Consensus 563 i~~LieA~~~l~~~~~~v-~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~aa 641 (784)
+..-++.+.++ .|+. ++.++++... .......+.+++.++++|+. +....... .....+....+....
T Consensus 126 ~~~~l~l~~~l---~P~~k~vgvi~~~~~-----~~s~~~~~~~~~~~~~~g~~--~v~~~~~~-~~~~~~~~~~l~~~~ 194 (302)
T 3lkv_A 126 VEQHVELIKEI---LPNVKSIGVVYNPGE-----ANAVSLMELLKLSAAKHGIK--LVEATALK-SADVQSATQAIAEKS 194 (302)
T ss_dssp HHHHHHHHHHH---STTCCEEEEEECTTC-----HHHHHHHHHHHHHHHHTTCE--EEEEECSS-GGGHHHHHHHHHTTC
T ss_pred HHHHHHHHHHh---CCCCCEEEEEeCCCc-----ccHHHHHHHHHHHHHHcCCE--EEEEecCC-hHHHHHHHHhccCCe
Confidence 44445555444 3433 5666665432 12234566778888888863 43333222 122233334444457
Q ss_pred cEEEeCCC---CCCCcHHHHHHHHcCCcEEEcCccccccccccCce-EEEECCC
Q 003947 642 GAFVQPAL---YEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKS-GFHIDPY 691 (784)
Q Consensus 642 dvfV~PS~---~E~fGltvlEAMA~GlPVIaT~~GG~~EiI~dg~~-G~li~p~ 691 (784)
|++..|.. ..+......-+..+++||++.... .+..|.- |+.+++.
T Consensus 195 d~i~~~~d~~~~~~~~~i~~~~~~~~iPv~~~~~~----~v~~G~l~~~~~~~~ 244 (302)
T 3lkv_A 195 DVIYALIDNTVASAIEGMIVAANQAKTPVFGAATS----YVERGAIASLGFDYY 244 (302)
T ss_dssp SEEEECSCHHHHHTHHHHHHHHHHTTCCEEESSHH----HHHTTCSEEEECCHH
T ss_pred eEEEEeCCcchhhHHHHHHHHHhhcCCceeecccc----cccCCceEEEecCHH
Confidence 88877754 222233345577899999987543 3444433 4555443
No 94
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=34.25 E-value=33 Score=35.59 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=25.0
Q ss_pred ceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcc
Q 003947 254 VFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDIT 307 (784)
Q Consensus 254 ~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~ 307 (784)
.|||+||..|. +.++ ...+|.+...+.+.++||+|+
T Consensus 22 ~MKiLII~aHP-----------~~~S-------~n~aL~~~~~~~l~~~G~eV~ 57 (280)
T 4gi5_A 22 SMKVLLIYAHP-----------EPRS-------LNGALKNFAIRHLQQAGHEVQ 57 (280)
T ss_dssp CCEEEEEECCS-----------CTTS-------HHHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEeCC-----------CCcc-------HHHHHHHHHHHHHHHCCCeEE
Confidence 37999997553 3333 234455567788999999998
No 95
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=33.71 E-value=36 Score=32.75 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHc-CCCcccceEEEecC
Q 003947 286 DQVRALENEMLLRIKQQ-GLDITPRILIITRL 316 (784)
Q Consensus 286 d~~raLe~eLa~~L~~~-GheV~~~i~VvTr~ 316 (784)
+...+++..|.+.|.+. |++| ++||.
T Consensus 28 ~~~l~ia~~l~~~L~~~~G~~V-----~ltR~ 54 (179)
T 1jwq_A 28 TFNLAMALKVESILKQNPKLEV-----VLTRS 54 (179)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEE-----EESCS
T ss_pred HHHHHHHHHHHHHHHhCCCCEE-----EEeCC
Confidence 44556666888899999 9988 67876
No 96
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=33.32 E-value=42 Score=34.45 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=24.4
Q ss_pred cceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcc
Q 003947 253 RVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDIT 307 (784)
Q Consensus 253 ~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~ 307 (784)
|||||++|..|. ..+|. .++|.+.+++.+.+.|++|+
T Consensus 1 ~MmkiLiI~gSp-----------r~~s~-------t~~la~~~~~~l~~~g~eV~ 37 (273)
T 1d4a_A 1 VGRRALIVLAHS-----------ERTSF-------NYAMKEAAAAALKKKGWEVV 37 (273)
T ss_dssp CCCEEEEEECCS-----------CTTSH-------HHHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEEEeCC-----------CCccH-------HHHHHHHHHHHHHhCCCeEE
Confidence 358999997443 33332 33444566777888999997
No 97
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=32.68 E-value=31 Score=33.94 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=23.1
Q ss_pred cceEEEEEccCccccccCccCCCC--cccchhhhHHHHHHHHHHHHHHHHHc--CCCcc
Q 003947 253 RVFNVVIFTPHGYFAQDNVLGYPD--TGGQVVYILDQVRALENEMLLRIKQQ--GLDIT 307 (784)
Q Consensus 253 ~~mkI~ivs~h~~~~~~~~lg~p~--tGG~~vyv~d~~raLe~eLa~~L~~~--GheV~ 307 (784)
|||||++|+-| |. .+|.. ++|.+.+.+.+.++ |++|+
T Consensus 3 mM~kiLiI~gS-----------pr~~~~S~s-------~~l~~~~~~~~~~~~~g~ev~ 43 (211)
T 3p0r_A 3 AMTKVLFVKAN-----------NRPAEQAVS-------VKLYEAFLASYKEAHPNDTVV 43 (211)
T ss_dssp -CCEEEEEECC-----------CSCTTTCHH-------HHHHHHHHHHHHHHCTTSEEE
T ss_pred ccCEEEEEEeC-----------CCCCCCCHH-------HHHHHHHHHHHHHhCCCCeEE
Confidence 67899999744 33 34433 33334566677777 88887
No 98
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=32.55 E-value=21 Score=36.65 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=25.2
Q ss_pred cceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEecC
Q 003947 253 RVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPRILIITRL 316 (784)
Q Consensus 253 ~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~~~i~VvTr~ 316 (784)
|+|||+|....|+.| ..++++|.++|++|. +++|.
T Consensus 1 M~~~vlVtGatG~iG-------------------------~~l~~~L~~~g~~V~----~~~r~ 35 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLG-------------------------QYVVESIKNDGNTPI----ILTRS 35 (311)
T ss_dssp -CCEEEEETTTSHHH-------------------------HHHHHHHHHTTCEEE----EEESC
T ss_pred CCCEEEEECCCcHHH-------------------------HHHHHHHHhCCCEEE----EEeCC
Confidence 668998886555532 156677899999988 88876
No 99
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=32.34 E-value=3.4e+02 Score=27.38 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=22.9
Q ss_pred cCCCceEEEE--cC-C--------ChhHHHHHHHHhCCCcEEEEec
Q 003947 380 LQCKPDLIIG--NY-S--------DGNIVASLLAHKLDVTQCTIAH 414 (784)
Q Consensus 380 ~~~~pDIIh~--~~-~--------~~~lva~llar~~gvp~V~t~H 414 (784)
+..+||+|++ |. . .|-..|.+-+..+|+|-|..-.
T Consensus 83 ~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 83 MDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp STTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 3568999994 21 1 1245666777788999886543
No 100
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=31.61 E-value=1.8e+02 Score=29.86 Aligned_cols=14 Identities=7% Similarity=-0.081 Sum_probs=10.5
Q ss_pred HHHHHHHHcCCCcc
Q 003947 294 EMLLRIKQQGLDIT 307 (784)
Q Consensus 294 eLa~~L~~~GheV~ 307 (784)
.++++|.++|+++.
T Consensus 39 ~l~~~L~~~g~~~~ 52 (346)
T 4egb_A 39 NFVHYMLQSYETYK 52 (346)
T ss_dssp HHHHHHHHHCTTEE
T ss_pred HHHHHHHhhCCCcE
Confidence 46677899997665
No 101
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=31.59 E-value=2.4e+02 Score=23.98 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=64.1
Q ss_pred eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCC-C-----CC
Q 003947 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-Y-----EA 652 (784)
Q Consensus 580 v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~-----E~ 652 (784)
.+++|+.+.+ ...+.+....++.|. .|.... +..+....+.. ..|++++-.. . +.
T Consensus 4 ~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~ 65 (140)
T 2qr3_A 4 GTIIIVDDNK----------GVLTAVQLLLKNHFS--KVITLS------SPVSLSTVLREENPEVVLLDMNFTSGINNGN 65 (140)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHTTTSS--EEEEEC------CHHHHHHHHHHSCEEEEEEETTTTC-----C
T ss_pred ceEEEEeCCH----------HHHHHHHHHHHhCCc--EEEEeC------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCc
Confidence 5677777652 233455566665543 344332 23455555543 3466666433 2 44
Q ss_pred CcHHHHHHHH---cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 653 FGLTVVEAMT---CGLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 653 fGltvlEAMA---~GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
-|+.+++.+. ..+|+|+. .... ..+.+..|..+++..|.+.+++.++|...+
T Consensus 66 ~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 66 EGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp CHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHH
Confidence 5666666554 47888874 3332 244455788999999999999999997554
No 102
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=31.45 E-value=2.5e+02 Score=24.08 Aligned_cols=75 Identities=7% Similarity=0.052 Sum_probs=45.0
Q ss_pred hhHHHHHHH-ccccEEEeCCC-CCCCcHHHHHHHH-----cCCcEEEc-Ccc---ccccccccCceEEEECCCCHHHHHH
Q 003947 630 NGELYRYIC-DTKGAFVQPAL-YEAFGLTVVEAMT-----CGLPTFAT-CNG---GPAEIIVHGKSGFHIDPYKGDQATG 698 (784)
Q Consensus 630 ~~el~~~la-~aadvfV~PS~-~E~fGltvlEAMA-----~GlPVIaT-~~G---G~~EiI~dg~~G~li~p~d~e~lAe 698 (784)
..+..+.+. ...|++++-.. .+.-|+.+++.+. .++|+|+. ... ...+.+..|..+++..|.+.+++.+
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~ 114 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLS 114 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHH
Confidence 345555543 23577666432 3444666666654 56788873 332 2344556788999999999999999
Q ss_pred HHHHHH
Q 003947 699 ILVDFF 704 (784)
Q Consensus 699 ~I~~~l 704 (784)
+|..++
T Consensus 115 ~i~~~~ 120 (140)
T 3n53_A 115 RIEIHL 120 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997654
No 103
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=31.33 E-value=2.8e+02 Score=24.56 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=46.1
Q ss_pred hhHHHHHHHc---cccEEEeCCC-CCCCcHHHHHHHH---cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHH
Q 003947 630 NGELYRYICD---TKGAFVQPAL-YEAFGLTVVEAMT---CGLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATG 698 (784)
Q Consensus 630 ~~el~~~la~---aadvfV~PS~-~E~fGltvlEAMA---~GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe 698 (784)
..+..+.+.. ..|++++-.. .+.-|+.+++.+. ..+|+|+. .... ..+.+..|..+++..|.+.+++.+
T Consensus 70 ~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~ 149 (157)
T 3hzh_A 70 GEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQ 149 (157)
T ss_dssp HHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHH
Confidence 3455555543 2366666433 3445666665543 46788774 3322 334556788999999999999998
Q ss_pred HHHHH
Q 003947 699 ILVDF 703 (784)
Q Consensus 699 ~I~~~ 703 (784)
+|..+
T Consensus 150 ~i~~~ 154 (157)
T 3hzh_A 150 RVMSV 154 (157)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88643
No 104
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=31.27 E-value=1e+02 Score=29.89 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=18.5
Q ss_pred CCceEEEEcCCCh--hHHHHHHHHh-CCCcEE
Q 003947 382 CKPDLIIGNYSDG--NIVASLLAHK-LDVTQC 410 (784)
Q Consensus 382 ~~pDIIh~~~~~~--~lva~llar~-~gvp~V 410 (784)
.+.|+|++-..+. +..+...++. .+.+.+
T Consensus 64 ~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~i 95 (218)
T 3l4b_C 64 SKNDVVVILTPRDEVNLFIAQLVMKDFGVKRV 95 (218)
T ss_dssp CTTCEEEECCSCHHHHHHHHHHHHHTSCCCEE
T ss_pred ccCCEEEEecCCcHHHHHHHHHHHHHcCCCeE
Confidence 4789888766554 6666666665 565544
No 105
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=30.95 E-value=2.1e+02 Score=23.14 Aligned_cols=103 Identities=6% Similarity=0.048 Sum_probs=61.9
Q ss_pred EEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCC-CCCCcHHHH
Q 003947 581 NLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLTVV 658 (784)
Q Consensus 581 ~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGltvl 658 (784)
+++|+.+.+ ...+.+....+..|. +|.... +..+....+.. ..|++++-.. .+.-|..++
T Consensus 3 ~iliv~~~~----------~~~~~l~~~l~~~g~--~v~~~~------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~ 64 (119)
T 2j48_A 3 HILLLEEED----------EAATVVCEMLTAAGF--KVIWLV------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLL 64 (119)
T ss_dssp EEEEECCCH----------HHHHHHHHHHHHTTC--EEEEES------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHH
T ss_pred EEEEEeCCH----------HHHHHHHHHHHhCCc--EEEEec------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 566676552 233455666666554 344432 23444444432 3577666433 344567777
Q ss_pred HHHH-----cCCcEEEc-CccccccccccCceEEEECCCCHHHHHHHHH
Q 003947 659 EAMT-----CGLPTFAT-CNGGPAEIIVHGKSGFHIDPYKGDQATGILV 701 (784)
Q Consensus 659 EAMA-----~GlPVIaT-~~GG~~EiI~dg~~G~li~p~d~e~lAe~I~ 701 (784)
+.+. ..+|+|+. ..+...+....|..+++..|.+.+++...|.
T Consensus 65 ~~l~~~~~~~~~~ii~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~ 113 (119)
T 2j48_A 65 QHLREHQADPHPPLVLFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQ 113 (119)
T ss_dssp HHHHHTCCCSSCCCEEEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHH
T ss_pred HHHHhccccCCCCEEEEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHH
Confidence 7775 46788763 3333225566678899999999999888886
No 106
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=30.30 E-value=81 Score=32.64 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=16.4
Q ss_pred CCCceEEEE-cCCChhHHHHHHHHhCCCcEEE
Q 003947 381 QCKPDLIIG-NYSDGNIVASLLAHKLDVTQCT 411 (784)
Q Consensus 381 ~~~pDIIh~-~~~~~~lva~llar~~gvp~V~ 411 (784)
..+||+++. +. ++...++++..++|...
T Consensus 78 ~~~~D~vid~~~---~~~sa~~~~~~~~~~~i 106 (348)
T 1psw_A 78 EKRYDRAYVLPN---SFKSALVPLFAGIPHRT 106 (348)
T ss_dssp TTTCSEEEECSC---CSGGGHHHHHTTCSEEE
T ss_pred hcCCCEEEECCC---ChHHHHHHHHhCCCEEe
Confidence 458998883 32 22333455667777643
No 107
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=30.28 E-value=2.6e+02 Score=23.97 Aligned_cols=107 Identities=8% Similarity=0.137 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH---ccccEEEeCC-CCCCCcH
Q 003947 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC---DTKGAFVQPA-LYEAFGL 655 (784)
Q Consensus 580 v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la---~aadvfV~PS-~~E~fGl 655 (784)
.+++|+.+.+ ...+.+....++.+. .|.... +..+....+. ...|++++-. ..+.-|+
T Consensus 4 ~~ilivdd~~----------~~~~~l~~~l~~~g~--~v~~~~------~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~ 65 (143)
T 3jte_A 4 AKILVIDDES----------TILQNIKFLLEIDGN--EVLTAS------SSTEGLRIFTENCNSIDVVITDMKMPKLSGM 65 (143)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHTTTTCCEEEEESCCSSSCHH
T ss_pred CEEEEEcCCH----------HHHHHHHHHHHhCCc--eEEEeC------CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHH
Confidence 5677777652 234556666666653 344332 3445666664 2367777643 3455577
Q ss_pred HHHHHHH---cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 656 TVVEAMT---CGLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 656 tvlEAMA---~GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
.+++.+. ..+|+|+. .... ..+.+..|..+++..|.+.+++..+|...+
T Consensus 66 ~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 66 DILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp HHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 7666554 36788773 3333 344566788999999999999999997655
No 108
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=28.63 E-value=49 Score=30.07 Aligned_cols=109 Identities=13% Similarity=0.177 Sum_probs=65.5
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH-ccccEEEeCC-CCCCCcHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPA-LYEAFGLT 656 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fGlt 656 (784)
+.+++||-+.+ ...+-+....+..|.. .|.... +..+..+.+. ..-|++++=- ..+--|+.
T Consensus 12 ~~rILiVDD~~----------~~r~~l~~~L~~~G~~-~v~~a~------~g~~al~~~~~~~~DlillD~~MP~mdG~e 74 (134)
T 3to5_A 12 NMKILIVDDFS----------TMRRIVKNLLRDLGFN-NTQEAD------DGLTALPMLKKGDFDFVVTDWNMPGMQGID 74 (134)
T ss_dssp TCCEEEECSCH----------HHHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHHHHCCSEEEEESCCSSSCHHH
T ss_pred CCEEEEEeCCH----------HHHHHHHHHHHHcCCc-EEEEEC------CHHHHHHHHHhCCCCEEEEcCCCCCCCHHH
Confidence 46777776542 2344556666666653 233321 1233333333 2346666532 23455777
Q ss_pred HHHHHH-----cCCcEEE-cCccccc---cccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 657 VVEAMT-----CGLPTFA-TCNGGPA---EIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 657 vlEAMA-----~GlPVIa-T~~GG~~---EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
+++.+- ..+|||. |..+... +..+.|.++|+..|-+++++.++|.+++
T Consensus 75 l~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 75 LLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp HHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 877763 4688887 5554443 3445788999999999999999997654
No 109
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=28.41 E-value=48 Score=34.35 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=31.3
Q ss_pred HhhcCCCcchHhHHhcCCCcceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcc
Q 003947 234 DLLQAPESSTLETFLGKIPRVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDIT 307 (784)
Q Consensus 234 ~~~~~p~~~~~~~~~~~~p~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~ 307 (784)
+.++.|+...|.. ..++|||++|+ |+|..+|....+. +.+++.+.+.|++|+
T Consensus 42 ~~~~~~~~~~~~~----~~~~mKILiI~-----------GS~R~~S~T~~La-------~~~~~~l~~~G~eve 93 (279)
T 2fzv_A 42 SFAIERPALGLAP----DAPPVRILLLY-----------GSLRARSFSRLAV-------EEAARLLQFFGAETR 93 (279)
T ss_dssp TTCCSCTTTTTSC----CCSCCEEEEEE-----------SCCSSSCHHHHHH-------HHHHHHHHHTTCEEE
T ss_pred HHcCCCChhhccC----CCCCCEEEEEE-----------eCCCCCCHHHHHH-------HHHHHHHhhCCCEEE
Confidence 3455555555532 14568999996 4455555443333 355666778899987
No 110
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=27.50 E-value=3.1e+02 Score=23.92 Aligned_cols=109 Identities=7% Similarity=-0.018 Sum_probs=64.0
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCcEEEccCcCCcCChhHHHHHHHc--cccEEEeCCC-CCCCc
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTY-KLNGQFRWISSQMNRVRNGELYRYICD--TKGAFVQPAL-YEAFG 654 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l-~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~-~E~fG 654 (784)
..+++|+.+.+ ...+.+....++. +. ..|.... +..+....+.. ..|++++-.. .+.-|
T Consensus 3 ~~~iLivdd~~----------~~~~~l~~~L~~~~g~-~~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~g 65 (154)
T 2qsj_A 3 LTVVLIVDDHH----------LIRAGAKNLLEGAFSG-MRVEGAE------TVSDALAFLEADNTVDLILLDVNLPDAEA 65 (154)
T ss_dssp CEEEEEECSCH----------HHHHHHHHHHHHHCTT-EEEEEES------SHHHHHHHHHTTCCCSEEEECC------C
T ss_pred ccEEEEEcCCH----------HHHHHHHHHHHhCCCc-eEEEEec------CHHHHHHHHhccCCCCEEEEeCCCCCCch
Confidence 35778887652 2345566666665 32 1243332 34566666653 3677776443 23346
Q ss_pred HHHHHHHH---cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 655 LTVVEAMT---CGLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 655 ltvlEAMA---~GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
+.+++.+. .++|+|+. .... ..+.+..|..|++..|.+.+++.++|..++
T Consensus 66 ~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~ 122 (154)
T 2qsj_A 66 IDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLIL 122 (154)
T ss_dssp HHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHH
Confidence 66666654 46888874 3322 244456788899999999999999997655
No 111
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=27.41 E-value=1.7e+02 Score=25.21 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=65.7
Q ss_pred eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHh-cCCCCcEEEccCcCCcCChhHHHHHHHc--cccEEEeCCCC--CCCc
Q 003947 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDT-YKLNGQFRWISSQMNRVRNGELYRYICD--TKGAFVQPALY--EAFG 654 (784)
Q Consensus 580 v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~-l~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~~--E~fG 654 (784)
.+++||.+.+ ...+.+....++ .+. .|.... +..+..+.+.. ..|++++-... +.-|
T Consensus 5 ~~ilivdd~~----------~~~~~l~~~L~~~~~~--~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g 66 (140)
T 3lua_A 5 GTVLLIDYFE----------YEREKTKIIFDNIGEY--DFIEVE------NLKKFYSIFKDLDSITLIIMDIAFPVEKEG 66 (140)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHHHHCCC--EEEEEC------SHHHHHTTTTTCCCCSEEEECSCSSSHHHH
T ss_pred CeEEEEeCCH----------HHHHHHHHHHHhccCc--cEEEEC------CHHHHHHHHhcCCCCcEEEEeCCCCCCCcH
Confidence 5677777652 234456666666 554 344332 23455555532 35777765432 2346
Q ss_pred HHHHHHHHc-----CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 655 LTVVEAMTC-----GLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 655 ltvlEAMA~-----GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
+.+++.+.. .+|+|+. .... ..+.+..|..+++..|.+.+++.++|..++
T Consensus 67 ~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (140)
T 3lua_A 67 LEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVL 125 (140)
T ss_dssp HHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 666666544 7888874 3332 234456788999999999999999997654
No 112
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=26.92 E-value=31 Score=33.00 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCCcccceEEEecC
Q 003947 294 EMLLRIKQQGLDITPRILIITRL 316 (784)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvTr~ 316 (784)
.++++|.++|++|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (221)
T 3ew7_A 15 RILEEAKNRGHEVT----AIVRN 33 (221)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHhCCCEEE----EEEcC
Confidence 45677899999998 88876
No 113
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=26.10 E-value=3.1e+02 Score=23.48 Aligned_cols=108 Identities=11% Similarity=0.186 Sum_probs=64.9
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH-ccccEEEeCCC-CCCCcHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPAL-YEAFGLT 656 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS~-~E~fGlt 656 (784)
..+++|+.+.+ ...+.+....+..|. .|.... +..+....+. ...|++++-.. ...-|+.
T Consensus 4 ~~~Ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvllD~~l~~~~g~~ 65 (136)
T 2qzj_A 4 QTKILIIDGDK----------DNCQKLKGFLEEKGI--SIDLAY------NCEEAIGKIFSNKYDLIFLEIILSDGDGWT 65 (136)
T ss_dssp CCEEEEECSCH----------HHHHHHHHHHHTTTC--EEEEES------SHHHHHHHHHHCCCSEEEEESEETTEEHHH
T ss_pred CCeEEEEcCCH----------HHHHHHHHHHHHCCC--EEEEEC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 35777777652 233455666665543 344332 2345555543 23577776332 2335677
Q ss_pred HHHHHHc--CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 657 VVEAMTC--GLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 657 vlEAMA~--GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
+++.+.. .+|+|.. .... ..+.+..|..+++..|.+.+++.++|...+
T Consensus 66 l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 119 (136)
T 2qzj_A 66 LCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAIL 119 (136)
T ss_dssp HHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 7776643 5787763 3332 344556788999999999999999987655
No 114
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=26.02 E-value=3e+02 Score=23.30 Aligned_cols=108 Identities=10% Similarity=0.156 Sum_probs=67.5
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-c-ccEEEeCC-CCCCCcH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-T-KGAFVQPA-LYEAFGL 655 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-a-advfV~PS-~~E~fGl 655 (784)
..+++|+.+.+ ...+.+....++.|. .|.... +..+....+.. . .|++++-. ..+.-|+
T Consensus 7 ~~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~ 68 (136)
T 3hdv_A 7 RPLVLVVDDNA----------VNREALILYLKSRGI--DAVGAD------GAEEARLYLHYQKRIGLMITDLRMQPESGL 68 (136)
T ss_dssp CCEEEEECSCH----------HHHHHHHHHHHHTTC--CEEEES------SHHHHHHHHHHCTTEEEEEECSCCSSSCHH
T ss_pred CCeEEEECCCH----------HHHHHHHHHHHHcCc--eEEEeC------CHHHHHHHHHhCCCCcEEEEeccCCCCCHH
Confidence 45788887652 234556666776664 344432 23455555543 2 46666643 3455677
Q ss_pred HHHHHHHc----CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 656 TVVEAMTC----GLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 656 tvlEAMA~----GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
.+++.+-. .+|+|+. .... ..+.+..|..+++..|.+.+++.++|.+..
T Consensus 69 ~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (136)
T 3hdv_A 69 DLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp HHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHh
Confidence 88877653 4688774 3332 344556788999999999999999997544
No 115
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.52 E-value=2.6e+02 Score=23.97 Aligned_cols=108 Identities=8% Similarity=0.142 Sum_probs=63.9
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCCCCCCcHHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPALYEAFGLTV 657 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGltv 657 (784)
..+++|+.+.+ ...+.+....++.|. .|.... +..+....+.. ..|++++-...+.-|+.+
T Consensus 4 ~~~iLivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~ 65 (142)
T 2qxy_A 4 TPTVMVVDESR----------ITFLAVKNALEKDGF--NVIWAK------NEQEAFTFLRREKIDLVFVDVFEGEESLNL 65 (142)
T ss_dssp CCEEEEECSCH----------HHHHHHHHHHGGGTC--EEEEES------SHHHHHHHHTTSCCSEEEEECTTTHHHHHH
T ss_pred CCeEEEEeCCH----------HHHHHHHHHHHhCCC--EEEEEC------CHHHHHHHHhccCCCEEEEeCCCCCcHHHH
Confidence 34677777652 234556666666554 344332 23455555542 346666644222235555
Q ss_pred HHHHH---cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 658 VEAMT---CGLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 658 lEAMA---~GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
++.+. ..+|+|+. .... ..+.+..|..+++..|.+.+++.+.|..++
T Consensus 66 ~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 119 (142)
T 2qxy_A 66 IRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp HHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHH
Confidence 55543 36888774 3333 234455688899999999999999998655
No 116
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=25.43 E-value=3.4e+02 Score=23.69 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=64.4
Q ss_pred eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCC-CCCCcHHH
Q 003947 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLTV 657 (784)
Q Consensus 580 v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGltv 657 (784)
.+++|+.+.+ ...+.+.......|. .|.... +..+....+.. ..|++++-.. .+.-|+.+
T Consensus 4 ~~ILivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dliild~~l~~~~g~~~ 65 (155)
T 1qkk_A 4 PSVFLIDDDR----------DLRKAMQQTLELAGF--TVSSFA------SATEALAGLSADFAGIVISDIRMPGMDGLAL 65 (155)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------CHHHHHHTCCTTCCSEEEEESCCSSSCHHHH
T ss_pred CEEEEEeCCH----------HHHHHHHHHHHHcCc--EEEEEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHH
Confidence 4677777652 233455666666554 344332 23444444432 2466665432 34456666
Q ss_pred HHHHH---cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 658 VEAMT---CGLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 658 lEAMA---~GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
++.+. .++|+|+. .... ..+.+..|..+++..|.+.+++...|...+
T Consensus 66 ~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 119 (155)
T 1qkk_A 66 FRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119 (155)
T ss_dssp HHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Confidence 66653 47888874 3333 344456788999999999999999997655
No 117
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.39 E-value=70 Score=24.77 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=17.0
Q ss_pred cCCCCCChHHHHHHHHhcCc
Q 003947 195 MLAPDTSYAEFEQKFQEIGL 214 (784)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~ 214 (784)
..++++-|+.--..|++|||
T Consensus 2 ~~~~ee~~a~~L~~L~eMGF 21 (54)
T 2cp8_A 2 SSGSSGQTAALMAHLFEMGF 21 (54)
T ss_dssp CCSSCTTHHHHHHHHHHHTC
T ss_pred CCCHHHhhHHHHHHHHHcCC
Confidence 46788889877779999999
No 118
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=25.38 E-value=3e+02 Score=23.09 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=64.4
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH-ccccEEEeCCC-CCCCcHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPAL-YEAFGLT 656 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS~-~E~fGlt 656 (784)
..+++|+.+.+ ...+.+....++.|. .|.... +..+..+.+. ...|++++-.. .+.-|+.
T Consensus 6 ~~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~ 67 (132)
T 3lte_A 6 SKRILVVDDDQ----------AMAAAIERVLKRDHW--QVEIAH------NGFDAGIKLSTFEPAIMTLDLSMPKLDGLD 67 (132)
T ss_dssp -CEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHTCCSEEEEESCBTTBCHHH
T ss_pred CccEEEEECCH----------HHHHHHHHHHHHCCc--EEEEeC------CHHHHHHHHHhcCCCEEEEecCCCCCCHHH
Confidence 35777777652 233455666666553 344432 2345555443 33577666433 4455778
Q ss_pred HHHHHHc-----CCcEEEcCccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 657 VVEAMTC-----GLPTFATCNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 657 vlEAMA~-----GlPVIaT~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
+++.+-. ..|++.+.... ..+.+..|..+++..|.+.+++.++|....
T Consensus 68 ~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (132)
T 3lte_A 68 VIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLV 123 (132)
T ss_dssp HHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHc
Confidence 8877753 34555543322 234456788999999999999999997543
No 119
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=25.32 E-value=35 Score=32.87 Aligned_cols=19 Identities=11% Similarity=0.363 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCCcccceEEEecC
Q 003947 294 EMLLRIKQQGLDITPRILIITRL 316 (784)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvTr~ 316 (784)
.++++|.++|++|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (224)
T 3h2s_A 15 AIVAEARRRGHEVL----AVVRD 33 (224)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHHCCCEEE----EEEec
Confidence 46677889999988 88775
No 120
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=25.23 E-value=36 Score=33.44 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=39.4
Q ss_pred HHHHHHHccccEEEeCCCCCCCcH--HHHHHHHcCCcEEEcCccc-ccccc----ccC-------ceEEEECCCCHHHHH
Q 003947 632 ELYRYICDTKGAFVQPALYEAFGL--TVVEAMTCGLPTFATCNGG-PAEII----VHG-------KSGFHIDPYKGDQAT 697 (784)
Q Consensus 632 el~~~la~aadvfV~PS~~E~fGl--tvlEAMA~GlPVIaT~~GG-~~EiI----~dg-------~~G~li~p~d~e~lA 697 (784)
+=-+.+...+|+||.-. -++|. .+.||+..|+||++-+..| ..+.+ .+| ...+.+ .+|++++.
T Consensus 110 ~Rk~~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~-~~~~ee~~ 186 (195)
T 1rcu_A 110 MRSFVLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQ-AWTVEEAV 186 (195)
T ss_dssp HHHHHHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEE-ESSHHHHH
T ss_pred HHHHHHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEE-eCCHHHHH
Confidence 34455655677766532 34664 3789999999999986443 32222 222 112333 35788877
Q ss_pred HHHH
Q 003947 698 GILV 701 (784)
Q Consensus 698 e~I~ 701 (784)
+.|.
T Consensus 187 ~~l~ 190 (195)
T 1rcu_A 187 QIIE 190 (195)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 121
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=25.14 E-value=43 Score=40.96 Aligned_cols=79 Identities=18% Similarity=0.342 Sum_probs=54.5
Q ss_pred hhhhhhhhhhhcccCCc------cchHHHHHHHHhccCCCceeeccccCC---------CH---------HHHHHHHHHH
Q 003947 134 GMEFLNRHMSAKLFNDK------ESMQSLLEFLRVHSHMGKNMMLNEKIQ---------DL---------GTLQSSLRMA 189 (784)
Q Consensus 134 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---------~~~~~~~~~~ 189 (784)
|||.|.++|-+|+|.+. +.++.-.+.|+.|.+.|+.--+..-|. |+ .+...-+..|
T Consensus 6 giQmLS~~Lh~QiF~~~~~~~~~~~v~~s~~hL~~H~L~gk~t~~~p~v~~~LP~L~G~nldEHF~~lg~~~s~PYl~~a 85 (1172)
T 3ikm_A 6 DIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQPAVPLPDVELRLPPLYGDNLDQHFRLLAQKQSLPYLEAA 85 (1172)
T ss_dssp SSSCCCSSHHHHSCSSCCCCCTHHHHHHHHHTTTTTTCCSSSCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCHHHHHhhCCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcCCCcCCCCHHHHHHHHHHHHhHHHHHHH
Confidence 89999999999999653 224556689999999998754443332 11 2333456777
Q ss_pred HHHhhcCCCCCChHHHHHHHHhcCcccccCC
Q 003947 190 EKYLSMLAPDTSYAEFEQKFQEIGLERGWGD 220 (784)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 220 (784)
.+++..-.|..| ++|=|.+||-.
T Consensus 86 ~~~~~~~lP~~P--------~~W~~~~GWTr 108 (1172)
T 3ikm_A 86 NLLLQAQLPPKP--------PAWAWAEGWTR 108 (1172)
T ss_dssp HHHHHCCCCCCC--------CSCCCSSCCCC
T ss_pred HHHHhcCCCCCC--------cCccccCCeee
Confidence 777765455556 68999999943
No 122
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=25.13 E-value=28 Score=33.72 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCcccceEEEecC
Q 003947 294 EMLLRIKQQGLDITPRILIITRL 316 (784)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvTr~ 316 (784)
.+++.|.++|++|. +++|.
T Consensus 19 ~l~~~L~~~g~~V~----~~~r~ 37 (227)
T 3dhn_A 19 ALLNEALNRGFEVT----AVVRH 37 (227)
T ss_dssp HHHHHHHTTTCEEE----EECSC
T ss_pred HHHHHHHHCCCEEE----EEEcC
Confidence 45677899999887 88776
No 123
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=24.93 E-value=3.2e+02 Score=23.18 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=66.4
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH-ccccEEEeCCC-CCCCcHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPAL-YEAFGLT 656 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS~-~E~fGlt 656 (784)
..+++|+.+.+ ...+.+....++.+. .+.... +..+..+.+. ...|++++-.. .+.-|+.
T Consensus 7 ~~~ilivdd~~----------~~~~~l~~~L~~~~~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~ 68 (137)
T 3hdg_A 7 ALKILIVEDDT----------DAREWLSTIISNHFP--EVWSAG------DGEEGERLFGLHAPDVIITDIRMPKLGGLE 68 (137)
T ss_dssp CCCEEEECSCH----------HHHHHHHHHHHTTCS--CEEEES------SHHHHHHHHHHHCCSEEEECSSCSSSCHHH
T ss_pred ccEEEEEeCCH----------HHHHHHHHHHHhcCc--EEEEEC------CHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Confidence 46778887652 233455566655332 354443 2345555543 23577776543 4455777
Q ss_pred HHHHHHc---CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 657 VVEAMTC---GLPTFAT-CNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 657 vlEAMA~---GlPVIaT-~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
+++.+.. .+|+|+. .... ..+.+..|..+++..|.+.+++.++|.+++
T Consensus 69 ~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 69 MLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp HHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 7766543 6788874 3332 234556788999999999999999997655
No 124
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=24.57 E-value=3.3e+02 Score=23.29 Aligned_cols=107 Identities=15% Similarity=0.201 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH-ccccEEEeCCC-CCCCcHHH
Q 003947 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPAL-YEAFGLTV 657 (784)
Q Consensus 580 v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS~-~E~fGltv 657 (784)
.+++|+.+.+ ...+.+....++.|. .|.... +..+..+.+. ...|++++=.. .+.-|+.+
T Consensus 5 ~~iLivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~ 66 (136)
T 3t6k_A 5 HTLLIVDDDD----------TVAEMLELVLRGAGY--EVRRAA------SGEEALQQIYKNLPDALICDVLLPGIDGYTL 66 (136)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHH
T ss_pred CEEEEEeCCH----------HHHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHH
Confidence 4677776552 233455666666553 344332 2345555543 33577776432 34457777
Q ss_pred HHHHHc-----CCcEEE-cCcccc---ccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 658 VEAMTC-----GLPTFA-TCNGGP---AEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 658 lEAMA~-----GlPVIa-T~~GG~---~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
++.+-. .+|+|. |..+.. .+.+..|..+|+..|.+.+++..+|...+
T Consensus 67 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l 122 (136)
T 3t6k_A 67 CKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNIL 122 (136)
T ss_dssp HHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 777643 678876 443333 34456788999999999999999998665
No 125
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=24.55 E-value=1.8e+02 Score=30.33 Aligned_cols=69 Identities=9% Similarity=0.059 Sum_probs=46.2
Q ss_pred CCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCCCCCCcHH
Q 003947 578 ELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPALYEAFGLT 656 (784)
Q Consensus 578 ~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGlt 656 (784)
++++++-|.+... ++.++.+++++.+ +... ++.+++++ ..|+++..+-.....-.
T Consensus 47 ~~~~lvav~d~~~------------~~a~~~a~~~g~~---~~y~---------d~~ell~~~~iDaV~I~tP~~~H~~~ 102 (350)
T 4had_A 47 ENCVVTAIASRDL------------TRAREMADRFSVP---HAFG---------SYEEMLASDVIDAVYIPLPTSQHIEW 102 (350)
T ss_dssp SSEEEEEEECSSH------------HHHHHHHHHHTCS---EEES---------SHHHHHHCSSCSEEEECSCGGGHHHH
T ss_pred CCeEEEEEECCCH------------HHHHHHHHHcCCC---eeeC---------CHHHHhcCCCCCEEEEeCCCchhHHH
Confidence 6788887776532 4556778888864 2221 34445543 36888887665555556
Q ss_pred HHHHHHcCCcEEEc
Q 003947 657 VVEAMTCGLPTFAT 670 (784)
Q Consensus 657 vlEAMA~GlPVIaT 670 (784)
+.+|+.+|++|++=
T Consensus 103 ~~~al~aGkhVl~E 116 (350)
T 4had_A 103 SIKAADAGKHVVCE 116 (350)
T ss_dssp HHHHHHTTCEEEEC
T ss_pred HHHHHhcCCEEEEe
Confidence 88999999999985
No 126
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=24.52 E-value=41 Score=34.76 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCCcccceEEEecCC
Q 003947 294 EMLLRIKQQGLDITPRILIITRLL 317 (784)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvTr~~ 317 (784)
.+++.|.++||+|. +++|..
T Consensus 28 ~l~~~L~~~g~~V~----~~~r~~ 47 (342)
T 2x4g_A 28 HAARAIRAAGHDLV----LIHRPS 47 (342)
T ss_dssp HHHHHHHHTTCEEE----EEECTT
T ss_pred HHHHHHHHCCCEEE----EEecCh
Confidence 45677888999988 888753
No 127
>3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP}
Probab=24.17 E-value=3.9e+02 Score=27.15 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEcCCChhHHHHHHHHhC
Q 003947 366 ETFTEDVATEIIQELQCKPDLIIGNYSDGNIVASLLAHKL 405 (784)
Q Consensus 366 ~~f~~~~~~~i~~~~~~~pDIIh~~~~~~~lva~llar~~ 405 (784)
+.++.++...+.......|-++.+|+ .|+.+|..++..+
T Consensus 131 ~~~~~~~~~~l~~~~~~~~~~lvGhS-~Gg~vA~~~A~~~ 169 (319)
T 3lcr_A 131 TVLVRSLADVVQAEVADGEFALAGHS-SGGVVAYEVAREL 169 (319)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEEET-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEC-HHHHHHHHHHHHH
Confidence 34455555555554344666677765 5667777776654
No 128
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=24.06 E-value=79 Score=31.97 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=26.4
Q ss_pred HHhcCCC-cceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcc
Q 003947 246 TFLGKIP-RVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDIT 307 (784)
Q Consensus 246 ~~~~~~p-~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~ 307 (784)
.|-...+ ++|||++|+ |+|..+|....+ .+.+++.+.+.|++|+
T Consensus 25 ~~~~~~~~~~mkIliI~-----------GS~r~~s~t~~L-------a~~~~~~l~~~g~eve 69 (247)
T 2q62_A 25 SLRPAFSTHRPRILILY-----------GSLRTVSYSRLL-------AEEARRLLEFFGAEVK 69 (247)
T ss_dssp GGCCCCCCSCCEEEEEE-----------CCCCSSCHHHHH-------HHHHHHHHHHTTCEEE
T ss_pred hhhhhccCCCCeEEEEE-----------ccCCCCCHHHHH-------HHHHHHHHhhCCCEEE
Confidence 3334444 358999996 445545543332 2345666778899887
No 129
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=23.62 E-value=41 Score=32.24 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=22.7
Q ss_pred cCCCcceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcc
Q 003947 249 GKIPRVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDIT 307 (784)
Q Consensus 249 ~~~p~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~ 307 (784)
.++++.|||+|=|.|+-|. |-+.|.+.|.++||+|.
T Consensus 15 ~~~~~~MkIaIgsDhaG~~-----------------------lK~~i~~~L~~~G~eV~ 50 (169)
T 3ph3_A 15 VPRGSHMKIGIGSDHGGYN-----------------------LKREIADFLKKRGYEVI 50 (169)
T ss_dssp ------CEEEEEECGGGHH-----------------------HHHHHHHHHHHTTCEEE
T ss_pred cccCCCCEEEEEeCchHHH-----------------------HHHHHHHHHHHCCCEEE
Confidence 4566779999999887421 22356778899999986
No 130
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=23.39 E-value=3.2e+02 Score=22.73 Aligned_cols=109 Identities=15% Similarity=0.207 Sum_probs=66.0
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCC-CCCCcHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGlt 656 (784)
..+++|+.+.+ ...+.+....+..|.. .|.... +..+..+.+.. ..|++++-.. ...-|+.
T Consensus 4 ~~~ilivdd~~----------~~~~~l~~~l~~~~~~-~v~~~~------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~ 66 (128)
T 1jbe_A 4 ELKFLVVDDFS----------TMRRIVRNLLKELGFN-NVEEAE------DGVDALNKLQAGGYGFVISDWNMPNMDGLE 66 (128)
T ss_dssp TCCEEEECSCH----------HHHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHTTCCCCEEEEESCCSSSCHHH
T ss_pred ccEEEEECCCH----------HHHHHHHHHHHHcCCc-EEEeeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 35677776652 2334555666665542 344432 23455555542 2477766432 3445777
Q ss_pred HHHHHHc-----CCcEEE-cCccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 657 VVEAMTC-----GLPTFA-TCNGG---PAEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 657 vlEAMA~-----GlPVIa-T~~GG---~~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
+++.+.. .+|+|. |.... ..+.+..|..+++..|.+.+++.++|...+
T Consensus 67 l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 67 LLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp HHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHH
Confidence 8887754 567776 33332 244556788999999999999999987654
No 131
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=23.17 E-value=3.7e+02 Score=23.35 Aligned_cols=106 Identities=11% Similarity=0.059 Sum_probs=64.1
Q ss_pred eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHcc-c-cEEEeCC-CCCCCcHH
Q 003947 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICDT-K-GAFVQPA-LYEAFGLT 656 (784)
Q Consensus 580 v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~a-a-dvfV~PS-~~E~fGlt 656 (784)
.+++|+.+.+ ...+.+....+. + -.|.... +..+....+... . |++++-. ..+.-|+.
T Consensus 5 ~~ILivdd~~----------~~~~~l~~~L~~-~--~~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~ 65 (151)
T 3kcn_A 5 ERILLVDDDY----------SLLNTLKRNLSF-D--FEVTTCE------SGPEALACIKKSDPFSVIMVDMRMPGMEGTE 65 (151)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHTT-T--SEEEEES------SHHHHHHHHHHSCCCSEEEEESCCSSSCHHH
T ss_pred CeEEEEeCCH----------HHHHHHHHHhcc-C--ceEEEeC------CHHHHHHHHHcCCCCCEEEEeCCCCCCcHHH
Confidence 5778887652 223344444432 2 2344332 345666666543 3 7777643 34555777
Q ss_pred HHHHHH---cCCcEEE-cCccc---cccccccC-ceEEEECCCCHHHHHHHHHHHH
Q 003947 657 VVEAMT---CGLPTFA-TCNGG---PAEIIVHG-KSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 657 vlEAMA---~GlPVIa-T~~GG---~~EiI~dg-~~G~li~p~d~e~lAe~I~~~l 704 (784)
+++.+. ..+|+|+ |.... ..+.+..| ..+++..|.+.+++..+|...+
T Consensus 66 ~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l 121 (151)
T 3kcn_A 66 VIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGI 121 (151)
T ss_dssp HHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHH
Confidence 766554 4677776 33333 34445567 7899999999999999998665
No 132
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=23.03 E-value=52 Score=33.73 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCCcccceEEEecCC
Q 003947 294 EMLLRIKQQGLDITPRILIITRLL 317 (784)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvTr~~ 317 (784)
.++++|.++||+|. +++|..
T Consensus 26 ~l~~~L~~~g~~V~----~l~R~~ 45 (318)
T 2r6j_A 26 HMVKGSLKLGHPTY----VFTRPN 45 (318)
T ss_dssp HHHHHHHHTTCCEE----EEECTT
T ss_pred HHHHHHHHCCCcEE----EEECCC
Confidence 45567788999988 888764
No 133
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=22.87 E-value=41 Score=34.39 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=13.9
Q ss_pred HHHHHHHHcCCCcccceEEEecC
Q 003947 294 EMLLRIKQQGLDITPRILIITRL 316 (784)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvTr~ 316 (784)
.+++.|.+.||+|. ++.+.
T Consensus 26 ~la~~l~~~g~~V~----~~~r~ 44 (286)
T 3c24_A 26 RITRKIHDSAHHLA----AIEIA 44 (286)
T ss_dssp HHHHHHHHSSSEEE----EECCS
T ss_pred HHHHHHHhCCCEEE----EEECC
Confidence 46777899999886 66543
No 134
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=22.30 E-value=2e+02 Score=30.24 Aligned_cols=82 Identities=9% Similarity=-0.060 Sum_probs=49.5
Q ss_pred HHHHHHHHhHccCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccE
Q 003947 565 GLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGA 643 (784)
Q Consensus 565 ~LieA~~~l~~~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadv 643 (784)
.++.++.+ .+++.++.+.+... ++.++.++++++...+.... ++.+++++ ..|+
T Consensus 20 ~~~~~l~~----~~~~~lv~v~d~~~------------~~~~~~a~~~~~~~~~~~~~---------~~~~ll~~~~~D~ 74 (362)
T 1ydw_A 20 KVSRAIHL----APNATISGVASRSL------------EKAKAFATANNYPESTKIHG---------SYESLLEDPEIDA 74 (362)
T ss_dssp HHHHHHHH----CTTEEEEEEECSSH------------HHHHHHHHHTTCCTTCEEES---------SHHHHHHCTTCCE
T ss_pred HHHHHHhh----CCCcEEEEEEcCCH------------HHHHHHHHHhCCCCCCeeeC---------CHHHHhcCCCCCE
Confidence 34555543 35688876665421 34456677777643233332 24445542 3788
Q ss_pred EEeCCCCCCCcHHHHHHHHcCCcEEEcC
Q 003947 644 FVQPALYEAFGLTVVEAMTCGLPTFATC 671 (784)
Q Consensus 644 fV~PS~~E~fGltvlEAMA~GlPVIaT~ 671 (784)
++..+-.....-.+.+|+..|++|++-.
T Consensus 75 V~i~tp~~~h~~~~~~al~aGk~V~~EK 102 (362)
T 1ydw_A 75 LYVPLPTSLHVEWAIKAAEKGKHILLEK 102 (362)
T ss_dssp EEECCCGGGHHHHHHHHHTTTCEEEECS
T ss_pred EEEcCChHHHHHHHHHHHHCCCeEEEec
Confidence 8887655555556778999999999853
No 135
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=21.97 E-value=3.6e+02 Score=22.78 Aligned_cols=109 Identities=11% Similarity=0.118 Sum_probs=65.8
Q ss_pred CCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEE-ccCcCCcCChhHHHHHHH-ccccEEEeCCCC--CCC
Q 003947 578 ELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRW-ISSQMNRVRNGELYRYIC-DTKGAFVQPALY--EAF 653 (784)
Q Consensus 578 ~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~f-lG~~~~~v~~~el~~~la-~aadvfV~PS~~--E~f 653 (784)
...+++|+.+.+ ...+.+....++.|. .+.. .. +..+....+. ...|++++-... +.-
T Consensus 8 ~~~~iLivdd~~----------~~~~~l~~~L~~~g~--~v~~~~~------~~~~a~~~~~~~~~dlii~d~~~~~~~~ 69 (140)
T 3cg0_A 8 DLPGVLIVEDGR----------LAAATLRIQLESLGY--DVLGVFD------NGEEAVRCAPDLRPDIALVDIMLCGALD 69 (140)
T ss_dssp CCCEEEEECCBH----------HHHHHHHHHHHHHTC--EEEEEES------SHHHHHHHHHHHCCSEEEEESSCCSSSC
T ss_pred CCceEEEEECCH----------HHHHHHHHHHHHCCC--eeEEEEC------CHHHHHHHHHhCCCCEEEEecCCCCCCC
Confidence 346788887652 234455666666554 3442 22 2345555443 235777765432 345
Q ss_pred cHHHHHHHH--cCCcEEEc-Ccccc---ccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 654 GLTVVEAMT--CGLPTFAT-CNGGP---AEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 654 GltvlEAMA--~GlPVIaT-~~GG~---~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
|+.+++.+. ..+|+|+- ..... .+.+..|..+++..|.+.+++...|..++
T Consensus 70 g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 70 GVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp HHHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 666665554 57888874 33332 34456788999999999999999987654
No 136
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=21.97 E-value=3.9e+02 Score=23.21 Aligned_cols=108 Identities=9% Similarity=0.121 Sum_probs=64.6
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCC-CCCCcHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGlt 656 (784)
..+++||.+.+ ...+.+....+..|. .|.... +..+....+.. ..|++++-.. .+.-|+.
T Consensus 7 ~~~iLivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~ 68 (154)
T 2rjn_A 7 NYTVMLVDDEQ----------PILNSLKRLIKRLGC--NIITFT------SPLDALEALKGTSVQLVISDMRMPEMGGEV 68 (154)
T ss_dssp CCEEEEECSCH----------HHHHHHHHHHHTTTC--EEEEES------CHHHHHHHHTTSCCSEEEEESSCSSSCHHH
T ss_pred CCeEEEEcCCH----------HHHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHhcCCCCEEEEecCCCCCCHHH
Confidence 46778887652 234455666665553 344332 24455565543 3477766432 3445666
Q ss_pred HHHHHH---cCCcEEEc-Ccccc---ccccccC-ceEEEECCCCHHHHHHHHHHHH
Q 003947 657 VVEAMT---CGLPTFAT-CNGGP---AEIIVHG-KSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 657 vlEAMA---~GlPVIaT-~~GG~---~EiI~dg-~~G~li~p~d~e~lAe~I~~~l 704 (784)
+++.+. ..+|+|+. ..... .+.+..| ..+++..|.+.+++...|...+
T Consensus 69 ~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 69 FLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp HHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHH
Confidence 666553 46788774 33332 3334455 7899999999999999987654
No 137
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}
Probab=21.69 E-value=1.8e+02 Score=30.17 Aligned_cols=124 Identities=17% Similarity=0.107 Sum_probs=66.7
Q ss_pred CCChHHHHHHHHHhHccCCCeEEEEEeCCCCC-CcccHHHHHHHHHHHHHHHhcCCCCcE--EEccCcCCcCChhHHHHH
Q 003947 560 VKNLTGLVEWYGKNAKLRELVNLVVVGGDRRK-ESKDLEEQAEMKKMYGLIDTYKLNGQF--RWISSQMNRVRNGELYRY 636 (784)
Q Consensus 560 ~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~-~s~d~ee~~~~~~l~~li~~l~L~~~V--~flG~~~~~v~~~el~~~ 636 (784)
.+|+|....-.+. .. ..-.+.|.|.|.+. +.... .++.+.+.+-|+- | ...|..+.+-....--++
T Consensus 143 A~GID~~AH~~aL-~~--~g~TIaVl~~Gld~~YP~~n------~~L~~~i~~~Gll--iSE~ppg~~p~~~~Fp~RNRi 211 (288)
T 3uqz_A 143 AKGIDTAAHMAAL-QN--GGKTIAVIGTGLDVFYPKAN------KRLQDYIGNDHLV--LSEYGPGEQPLKFHFPARNRI 211 (288)
T ss_dssp CTTHHHHHHHHHH-HH--TCCEEEECSSCTTCCSSGGG------HHHHHHHHHHSEE--EESSCTTCCCCTTHHHHHHHH
T ss_pred ccCHHHHHHHHHH-hc--CCCEEEEecccccccCchhh------HHHHHHhcccCcE--eeccCCCCCccccccHHHHHH
Confidence 5899988865443 22 23578888888772 22111 2233444443420 0 011222222222334455
Q ss_pred HHccccEEEeCCCCCCCcH--HHHHHHHcCCcEEEc-------CccccccccccCceEEEECCCCHHHHHH
Q 003947 637 ICDTKGAFVQPALYEAFGL--TVVEAMTCGLPTFAT-------CNGGPAEIIVHGKSGFHIDPYKGDQATG 698 (784)
Q Consensus 637 la~aadvfV~PS~~E~fGl--tvlEAMA~GlPVIaT-------~~GG~~EiI~dg~~G~li~p~d~e~lAe 698 (784)
++.-++..|+..-.+.-|- |.-.|+..|+||+|- ...|+..+|.+| . .++ .+++++.+
T Consensus 212 IagLS~~~vVvEA~~~SGsliTA~~Ale~gR~VfavPG~i~~~~s~G~n~LI~~G-A-~lv--~~~~Dil~ 278 (288)
T 3uqz_A 212 IAGLCRGVIVAEAKMRSGSLITCERAMEEGRDVFAIPGSILDGLSDGCHHLIQEG-A-KLV--TSGQDVLA 278 (288)
T ss_dssp HHHHCSEEEEESCCTTCHHHHHHHHHHHTTCEEEECCCCSSSSTTHHHHHHHHTT-C-EEC--SSHHHHHH
T ss_pred HHHcCCeEEEEecCCCChHHHHHHHHHHcCCeEEEECCCCCCccchHHHHHHHCC-C-EEE--CCHHHHHH
Confidence 6555555554433344443 788999999999984 234677788877 3 333 35655443
No 138
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=21.64 E-value=3.5e+02 Score=22.50 Aligned_cols=106 Identities=12% Similarity=0.072 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHH-ccccEEEeCC-CCCCCcHHH
Q 003947 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPA-LYEAFGLTV 657 (784)
Q Consensus 580 v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fGltv 657 (784)
.+++|+.+.+ ...+.+....++.|. .|.... +..+..+.+. ...|++++-. ..+.-|+.+
T Consensus 4 ~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~ 65 (127)
T 3i42_A 4 QQALIVEDYQ----------AAAETFKELLEMLGF--QADYVM------SGTDALHAMSTRGYDAVFIDLNLPDTSGLAL 65 (127)
T ss_dssp EEEEEECSCH----------HHHHHHHHHHHHTTE--EEEEES------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHH
T ss_pred ceEEEEcCCH----------HHHHHHHHHHHHcCC--CEEEEC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 5677777652 234556666776654 344432 2445555554 3356666643 345567777
Q ss_pred HHHHH-----cCCcEEEc-Ccccc--ccccccCceEEEECCCCHHHHHHHHHHH
Q 003947 658 VEAMT-----CGLPTFAT-CNGGP--AEIIVHGKSGFHIDPYKGDQATGILVDF 703 (784)
Q Consensus 658 lEAMA-----~GlPVIaT-~~GG~--~EiI~dg~~G~li~p~d~e~lAe~I~~~ 703 (784)
++.+. ..+|+|+. ..... .+.+..|..+++..|-+.+++.+++...
T Consensus 66 ~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~ 119 (127)
T 3i42_A 66 VKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSI 119 (127)
T ss_dssp HHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHh
Confidence 77764 35788774 33222 3445567889999999999999999743
No 139
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=21.60 E-value=3.7e+02 Score=22.75 Aligned_cols=109 Identities=6% Similarity=0.091 Sum_probs=66.8
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHh-cCCCCcEEEccCcCCcCChhHHHHHHH-ccccEEEeCCC-CCCCcH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDT-YKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPAL-YEAFGL 655 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~-l~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS~-~E~fGl 655 (784)
..+++|+.+.+ ...+.+....++ .|.. .|.... +..+....+. ...|++++-.. .+.-|+
T Consensus 8 ~~~iLivdd~~----------~~~~~l~~~L~~~~~~~-~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 70 (143)
T 3cnb_A 8 DFSILIIEDDK----------EFADMLTQFLENLFPYA-KIKIAY------NPFDAGDLLHTVKPDVVMLDLMMVGMDGF 70 (143)
T ss_dssp -CEEEEECSCH----------HHHHHHHHHHHHHCTTC-EEEEEC------SHHHHHHHHHHTCCSEEEEETTCTTSCHH
T ss_pred CceEEEEECCH----------HHHHHHHHHHHhccCcc-EEEEEC------CHHHHHHHHHhcCCCEEEEecccCCCcHH
Confidence 46778887652 234456666666 5542 144433 2345555543 23577776443 344577
Q ss_pred HHHHHHHc-----CCcEEE-cCcccc---ccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 656 TVVEAMTC-----GLPTFA-TCNGGP---AEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 656 tvlEAMA~-----GlPVIa-T~~GG~---~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
.+++.+.. .+|+|+ |..... .+.+..|..+++..|.+.+++.++|...+
T Consensus 71 ~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 128 (143)
T 3cnb_A 71 SICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLV 128 (143)
T ss_dssp HHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 77777654 578876 333332 34456788999999999999999997665
No 140
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=21.38 E-value=5.1e+02 Score=24.48 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc----cccEEEeCCCCCCCcHHHHHHHHcCCcEEEc-----
Q 003947 600 AEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD----TKGAFVQPALYEAFGLTVVEAMTCGLPTFAT----- 670 (784)
Q Consensus 600 ~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~----aadvfV~PS~~E~fGltvlEAMA~GlPVIaT----- 670 (784)
...++.....+++|++-.++..+. +-..+.+.++... ..++++.-+-.++ .|.-+=|-..-+|||+-
T Consensus 17 ~v~~~a~~~l~~~gi~~ev~V~Sa---HR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t~~PVIgVP~~~~ 92 (163)
T 3ors_A 17 KIMQESCNMLDYFEIPYEKQVVSA---HRTPKMMVQFASEARERGINIIIAGAGGAA-HLPGMVASLTTLPVIGVPIETK 92 (163)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCT---TTSHHHHHHHHHHTTTTTCCEEEEEEESSC-CHHHHHHHHCSSCEEEEEECCT
T ss_pred HHHHHHHHHHHHcCCCEEEEEECC---cCCHHHHHHHHHHHHhCCCcEEEEECCchh-hhHHHHHhccCCCEEEeeCCCC
Confidence 344556667788888877888874 3345677776641 2567777655444 44444455677888873
Q ss_pred Cccccc---cccc--cCc--eEEEEC---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003947 671 CNGGPA---EIIV--HGK--SGFHID---PYKGDQATGILVDFFEKCKVDPGHWDEISQ 719 (784)
Q Consensus 671 ~~GG~~---EiI~--dg~--~G~li~---p~d~e~lAe~I~~~l~~ll~dp~~~~~m~~ 719 (784)
..+|.. .+++ .|. .-+.++ +.+..-+|..|.. +.|+++|+++.+
T Consensus 93 ~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~-----~~d~~l~~kl~~ 146 (163)
T 3ors_A 93 SLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLS-----IQNPSLVEKLNQ 146 (163)
T ss_dssp TTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHH-----TTCTHHHHHHHH
T ss_pred CCCCHHHHHHHhhCCCCCceEEEEcCCcccHHHHHHHHHHHh-----CCCHHHHHHHHH
Confidence 233443 2222 222 122233 3344455555542 478888887744
No 141
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=21.20 E-value=3.6e+02 Score=22.49 Aligned_cols=106 Identities=8% Similarity=0.090 Sum_probs=63.0
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc--cccEEEeCCC-CC-CCc
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD--TKGAFVQPAL-YE-AFG 654 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~-~E-~fG 654 (784)
..+++|+.+.+ ...+.+....+..|. +|.... +..+....+.. ..|++++-.. .+ .-|
T Consensus 5 ~~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g 66 (132)
T 2rdm_A 5 AVTILLADDEA----------ILLLDFESTLTDAGF--LVTAVS------SGAKAIEMLKSGAAIDGVVTDIRFCQPPDG 66 (132)
T ss_dssp SCEEEEECSSH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTTCCCCEEEEESCCSSSSCH
T ss_pred CceEEEEcCcH----------HHHHHHHHHHHHcCC--EEEEEC------CHHHHHHHHHcCCCCCEEEEeeeCCCCCCH
Confidence 35778887652 233455666665554 344332 34566666654 3577776433 33 456
Q ss_pred HHHHHHHH---cCCcEEEc-Ccccc---ccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 655 LTVVEAMT---CGLPTFAT-CNGGP---AEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 655 ltvlEAMA---~GlPVIaT-~~GG~---~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
+.+++.+. ..+|+|.. ..... .+.+.. .|++..|.+.+++..+|..++
T Consensus 67 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~--~~~l~kP~~~~~l~~~i~~~~ 121 (132)
T 2rdm_A 67 WQVARVAREIDPNMPIVYISGHAALEWASNGVPD--SIILEKPFTSAQLITAVSQLL 121 (132)
T ss_dssp HHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT--CEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC--cceEeCCCCHHHHHHHHHHHH
Confidence 77766654 36888774 33322 222223 279999999999999997655
No 142
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=21.20 E-value=1.2e+02 Score=31.75 Aligned_cols=82 Identities=7% Similarity=-0.002 Sum_probs=51.1
Q ss_pred HHHHHHHhHc---cCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cc
Q 003947 566 LVEWYGKNAK---LRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TK 641 (784)
Q Consensus 566 LieA~~~l~~---~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aa 641 (784)
-++++..++. ....+.++-|.+... ++.++.+++++.. .+.. +..+++++ ..
T Consensus 21 h~~~~~~~~~~~~~~~~~~l~av~d~~~------------~~a~~~a~~~g~~---~~~~---------d~~~ll~~~~i 76 (390)
T 4h3v_A 21 HSQAWRSAPRFFDLPLHPDLNVLCGRDA------------EAVRAAAGKLGWS---TTET---------DWRTLLERDDV 76 (390)
T ss_dssp HHHHHHHHHHHSCCSSEEEEEEEECSSH------------HHHHHHHHHHTCS---EEES---------CHHHHTTCTTC
T ss_pred HHHHHHhCccccccccCceEEEEEcCCH------------HHHHHHHHHcCCC---cccC---------CHHHHhcCCCC
Confidence 3555555543 234567777776532 4556778888764 2222 23444543 36
Q ss_pred cEEEeCCCCCCCcHHHHHHHHcCCcEEEcC
Q 003947 642 GAFVQPALYEAFGLTVVEAMTCGLPTFATC 671 (784)
Q Consensus 642 dvfV~PS~~E~fGltvlEAMA~GlPVIaT~ 671 (784)
|+++..+-.....-.+++|+.+|++|++=.
T Consensus 77 DaV~I~tP~~~H~~~~~~al~aGkhVl~EK 106 (390)
T 4h3v_A 77 QLVDVCTPGDSHAEIAIAALEAGKHVLCEK 106 (390)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CEEEEeCChHHHHHHHHHHHHcCCCceeec
Confidence 778877665555567899999999999853
No 143
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=21.08 E-value=49 Score=33.68 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=15.5
Q ss_pred HHHHHHHHcCCCcccceEEEecCC
Q 003947 294 EMLLRIKQQGLDITPRILIITRLL 317 (784)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvTr~~ 317 (784)
.++++|.++||+|. +++|..
T Consensus 22 ~l~~~L~~~g~~V~----~~~r~~ 41 (321)
T 3vps_A 22 HLARALVASGEEVT----VLDDLR 41 (321)
T ss_dssp HHHHHHHHTTCCEE----EECCCS
T ss_pred HHHHHHHHCCCEEE----EEecCC
Confidence 45677889999998 887764
No 144
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=21.07 E-value=1.2e+02 Score=26.42 Aligned_cols=35 Identities=14% Similarity=0.344 Sum_probs=22.9
Q ss_pred CcceEEEEEccCccccccCccCCCCcccchhhhHHHHHHHHHHHHHHHHHcCCCcc
Q 003947 252 PRVFNVVIFTPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDIT 307 (784)
Q Consensus 252 p~~mkI~ivs~h~~~~~~~~lg~p~tGG~~vyv~d~~raLe~eLa~~L~~~GheV~ 307 (784)
|..|||+++|..|. |... +. +.|.+.+.+.|+++.
T Consensus 2 ~~~mkIlvvC~~G~-------------~TSl-l~-------~kl~~~~~~~gi~~~ 36 (109)
T 2l2q_A 2 PGSMNILLVCGAGM-------------STSM-LV-------QRIEKYAKSKNINAT 36 (109)
T ss_dssp CCCEEEEEESSSSC-------------SSCH-HH-------HHHHHHHHHHTCSEE
T ss_pred CCceEEEEECCChH-------------hHHH-HH-------HHHHHHHHHCCCCeE
Confidence 33489999997775 2221 11 245567888999876
No 145
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=21.06 E-value=3.6e+02 Score=22.43 Aligned_cols=108 Identities=8% Similarity=0.123 Sum_probs=64.6
Q ss_pred eEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCC-CCCCcHHH
Q 003947 580 VNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLTV 657 (784)
Q Consensus 580 v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGltv 657 (784)
.+++|+.+.+ ...+.+....+..|. ..|.... +..+....+.. ..|++++-.. .+.-|..+
T Consensus 7 ~~ilivdd~~----------~~~~~l~~~L~~~g~-~~v~~~~------~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~ 69 (129)
T 1p6q_A 7 IKVLIVDDQV----------TSRLLLGDALQQLGF-KQITAAG------DGEQGMKIMAQNPHHLVISDFNMPKMDGLGL 69 (129)
T ss_dssp CCEEEECSSH----------HHHHHHHHHHHTTTC-SCEECCS------SHHHHHHHHHTSCCSEEEECSSSCSSCHHHH
T ss_pred CeEEEEcCCH----------HHHHHHHHHHHHCCC-cEEEecC------CHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Confidence 4677777652 233455566665543 2344332 23455555543 3577776433 34457777
Q ss_pred HHHHH-----cCCcEEEc-Ccccc---ccccccCceEEEECCCCHHHHHHHHHHHH
Q 003947 658 VEAMT-----CGLPTFAT-CNGGP---AEIIVHGKSGFHIDPYKGDQATGILVDFF 704 (784)
Q Consensus 658 lEAMA-----~GlPVIaT-~~GG~---~EiI~dg~~G~li~p~d~e~lAe~I~~~l 704 (784)
++.+. ..+|+|.. ..+.. .+.+..|..+++..|.+.+++..+|...+
T Consensus 70 ~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (129)
T 1p6q_A 70 LQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVF 125 (129)
T ss_dssp HHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHH
T ss_pred HHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 87774 35777764 33332 34455688899999999999999887554
No 146
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=20.57 E-value=1.7e+02 Score=30.73 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=46.3
Q ss_pred cCCCeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCCCCCCc
Q 003947 576 LRELVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPALYEAFG 654 (784)
Q Consensus 576 ~~~~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fG 654 (784)
..++++++=|.+... ++.++.+++++.+ .+.. +..+++++ ..|+++..+-.....
T Consensus 53 ~~~~~~lvav~d~~~------------~~a~~~a~~~g~~---~~y~---------d~~ell~~~~iDaV~IatP~~~H~ 108 (393)
T 4fb5_A 53 DVERPRLVHLAEANA------------GLAEARAGEFGFE---KATA---------DWRALIADPEVDVVSVTTPNQFHA 108 (393)
T ss_dssp SSCCCEEEEEECC--------------TTHHHHHHHHTCS---EEES---------CHHHHHHCTTCCEEEECSCGGGHH
T ss_pred cCCCcEEEEEECCCH------------HHHHHHHHHhCCC---eecC---------CHHHHhcCCCCcEEEECCChHHHH
Confidence 346788888876543 3456677788764 2222 34455553 357888776655555
Q ss_pred HHHHHHHHcCCcEEEc
Q 003947 655 LTVVEAMTCGLPTFAT 670 (784)
Q Consensus 655 ltvlEAMA~GlPVIaT 670 (784)
-.+..|+.+|++|++=
T Consensus 109 ~~a~~al~aGkhVl~E 124 (393)
T 4fb5_A 109 EMAIAALEAGKHVWCE 124 (393)
T ss_dssp HHHHHHHHTTCEEEEC
T ss_pred HHHHHHHhcCCeEEEc
Confidence 5689999999999985
No 147
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=20.34 E-value=3e+02 Score=26.27 Aligned_cols=122 Identities=6% Similarity=-0.071 Sum_probs=71.5
Q ss_pred CEEEEEecccCCCChHHHH-HHHHHhHccCCCeEEEEEeCCCC-CCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCC
Q 003947 549 PILFTMARLDRVKNLTGLV-EWYGKNAKLRELVNLVVVGGDRR-KESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMN 626 (784)
Q Consensus 549 ~iIl~vGRL~~~Kgi~~Li-eA~~~l~~~~~~v~LvIVG~g~~-~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~ 626 (784)
..+++-| ..|++.+. +++-.+++.+|+++|.++=.... ....+.+.+ +.+..++++ .+.|..+...+
T Consensus 45 ~~~isgg----a~G~D~~aae~vl~lk~~y~~i~L~~v~Pf~~~~~~w~~~~~---~~y~~ll~~---aD~v~~l~~~~- 113 (181)
T 2nx2_A 45 EWILISG----QLGVELWAAEAAYDLQEEYPDLKVAVITPFYEQEKNWKEPNK---EQYEAVLAQ---ADYEASLTHRP- 113 (181)
T ss_dssp CEEEECC----CTTHHHHHHHHHHTTTTTCTTCEEEEEESSBCTTTTSCHHHH---HHHHHHHHH---CSEEEESSSSB-
T ss_pred cEEEECC----CccHHHHHHHHHHHhccccCCceEEEEecccchhhCCCHHHH---HHHHHHHHh---CCeEEecccCC-
Confidence 3455544 67888766 55556677788999999988766 333344443 344444444 24566665322
Q ss_pred cCChh---HHHHHHHccccEEEeCCCCCC---CcHHHHHHHHc----CCcEEEcCcccccccccc
Q 003947 627 RVRNG---ELYRYICDTKGAFVQPALYEA---FGLTVVEAMTC----GLPTFATCNGGPAEIIVH 681 (784)
Q Consensus 627 ~v~~~---el~~~la~aadvfV~PS~~E~---fGltvlEAMA~----GlPVIaT~~GG~~EiI~d 681 (784)
....+ .--+++-+.+|..+.--..|. -..++--|... |.|+..-+..++.+++++
T Consensus 114 y~~~~~~~~rn~~mvd~sD~liavyDg~~~GgT~~~v~~A~~~~~~~~~pv~~I~~~~l~~~~~~ 178 (181)
T 2nx2_A 114 YESPLQFKQKNQFFIDKSDGLLLLYDPEKEGSPKYMLGTAEKRREQDGYPIYFITMDDLRVTVEE 178 (181)
T ss_dssp CCCHHHHHHHHHHHHHHSSEEEEECCTTTCCTTHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHCCEEEEEEcCCCCCCHHHHHHHHHHhccccCCeEEEEcHHHHHHHHhc
Confidence 11122 333455556887776544333 23334445454 799998888888887765
No 148
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=20.30 E-value=1e+02 Score=31.28 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=18.0
Q ss_pred ccCCCceeeccccCCCHHHHHHHHHHHHHHhhcCCC
Q 003947 163 HSHMGKNMMLNEKIQDLGTLQSSLRMAEKYLSMLAP 198 (784)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (784)
|+|+.-..+++++|.|.++++..+. .-.|..+|.
T Consensus 6 ~~~~~~~~~~~~~i~~~~~ie~~~~--~p~lg~iP~ 39 (271)
T 3bfv_A 6 HHHHHGSVIFDKRIKDEEDVEKELG--LPVLGSIQK 39 (271)
T ss_dssp ----------CCCCCSHHHHHHHHC--CCEEEEEEC
T ss_pred cccccccEEeeCcCCCHHHHHHHhC--CCeEEEecc
Confidence 4445557899999999998887653 445666665
No 149
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=20.25 E-value=3.8e+02 Score=22.38 Aligned_cols=108 Identities=8% Similarity=0.099 Sum_probs=63.5
Q ss_pred CeEEEEEeCCCCCCcccHHHHHHHHHHHHHHHhcCCCCcEEEccCcCCcCChhHHHHHHHc-cccEEEeCCC-CCCCcHH
Q 003947 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYGLIDTYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (784)
Q Consensus 579 ~v~LvIVG~g~~~~s~d~ee~~~~~~l~~li~~l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGlt 656 (784)
..+++|+.+.+ ...+.+....++.|. .+.... +..+..+.+.. ..|+++.-.. .+.-|+.
T Consensus 7 ~~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~ 68 (130)
T 3eod_A 7 GKQILIVEDEQ----------VFRSLLDSWFSSLGA--TTVLAA------DGVDALELLGGFTPDLMICDIAMPRMNGLK 68 (130)
T ss_dssp TCEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------CHHHHHHHHTTCCCSEEEECCC-----CHH
T ss_pred CCeEEEEeCCH----------HHHHHHHHHHHhCCc--eEEEeC------CHHHHHHHHhcCCCCEEEEecCCCCCCHHH
Confidence 46788887652 234556666676654 344332 34566666643 2577776433 3445777
Q ss_pred HHHHHHc---CCcEEEc-Ccccc---ccccccCceEEEECCC-CHHHHHHHHHHHH
Q 003947 657 VVEAMTC---GLPTFAT-CNGGP---AEIIVHGKSGFHIDPY-KGDQATGILVDFF 704 (784)
Q Consensus 657 vlEAMA~---GlPVIaT-~~GG~---~EiI~dg~~G~li~p~-d~e~lAe~I~~~l 704 (784)
+++.+.. .+|+|+. ..... .+.+..|..+++..|. +.+.+.+.+...+
T Consensus 69 ~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l 124 (130)
T 3eod_A 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 (130)
T ss_dssp HHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHh
Confidence 7766543 5788774 33322 3455678899999998 8888888887554
No 150
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=20.13 E-value=60 Score=33.24 Aligned_cols=20 Identities=20% Similarity=-0.024 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCCcccceEEEecCC
Q 003947 294 EMLLRIKQQGLDITPRILIITRLL 317 (784)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvTr~~ 317 (784)
.++++|.++||+|. +++|..
T Consensus 19 ~l~~~L~~~g~~V~----~~~R~~ 38 (321)
T 3c1o_A 19 FMVRASLSFSHPTF----IYARPL 38 (321)
T ss_dssp HHHHHHHHTTCCEE----EEECCC
T ss_pred HHHHHHHhCCCcEE----EEECCc
Confidence 34566788999998 888763
Done!