BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003948
(784 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 501 bits (1290), Expect = e-142, Method: Compositional matrix adjust.
Identities = 277/636 (43%), Positives = 383/636 (60%), Gaps = 26/636 (4%)
Query: 141 PLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFN 200
P L ++ ++ L E L +L ELR +++SVS++ GH ++ LG VELT+ALH V+N
Sbjct: 9 PTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYN 68
Query: 201 TPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSIS 260
TP D++IWDVGHQAY HKILTGRR ++ T+R+ GL FP R ES +D GHSSTSIS
Sbjct: 69 TPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSIS 128
Query: 261 AGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPT 320
AG+G+AVA + GKN + VIGDGA+TAG A+EA N+AG + + +V+LNDN+
Sbjct: 129 AGIGIAVAAEKEGKNRRTVCVIGDGAITAGXAFEAXNHAGDIRPDXLVILNDNEX----- 183
Query: 321 ATLDGPATPVGXXXXXXXXXXXXTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLIS 380
+ VG + LRE K + + E+ + +E+ +G +
Sbjct: 184 ----SISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVP-PIKELLKRTEEHIKGXVV 238
Query: 381 ASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAA 440
T FEELG YIGPVDGH+V L+T + +++ GP +H+ T+KG+GY PAE
Sbjct: 239 PG--TLFEELGFNYIGPVDGHDVLGLITTLKNXRDLK--GPQFLHIXTKKGRGYEPAEKD 294
Query: 441 ADRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNY 500
H V KFDP +G K+ +Y++ F + L + A D+K+ AI A G+G
Sbjct: 295 PITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAAKDNKLXAITPAXREGSGXVE 354
Query: 501 FQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPV 560
F ++FPDR FDV IAEQHAVTFAAGLA G KP AIYS+FLQR YDQV+HDV +QKLPV
Sbjct: 355 FSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPV 414
Query: 561 RFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCF 620
FA+DRAG+VGADG TH GAFD++++ C+P V+ PSDE E + T +D PS
Sbjct: 415 LFAIDRAGIVGADGQTHQGAFDLSYLRCIPEXVIXTPSDENECRQXLYTGYHYNDGPSAV 474
Query: 621 RFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDIS 680
R+PRGN +G L P K L IGKG + G+++AIL +G++ + A + ++
Sbjct: 475 RYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLXPEAAKVA-----ESLN 526
Query: 681 VTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLR 739
T+ D RF KPLD LI + A HE L+TVEE ++ GG GS V L P+ +
Sbjct: 527 ATLVDXRFVKPLDEALILEXAASHEALVTVEENAIXGGAGSGVNEVLXAH---RKPVPVL 583
Query: 740 SMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 775
++ LPD +I G+ + E GL + A + + L
Sbjct: 584 NIGLPDFFIPQGTQEEXRAELGLDAAGXEAKIKAWL 619
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 253/638 (39%), Positives = 365/638 (57%), Gaps = 26/638 (4%)
Query: 140 TPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVF 199
TPLLD I+ P +K LS E L L ELR +IV S+ G HL+++LG V++ ALH V
Sbjct: 10 TPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVL 69
Query: 200 NTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSI 259
++P D+I++DVGHQAY HKILTGRR +M ++K G++GF K ES HDA GH+STS+
Sbjct: 70 DSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSL 129
Query: 260 SAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLP 319
+ LGMA+ARD GK+ +V +VIGDG++T G A A+N G + +++VLNDN ++S+
Sbjct: 130 TNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDN-EMSI- 187
Query: 320 TATLDGPATPVGXXXXXXXXXXXXTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI 379
+ VG F++ A K + + + ++ R
Sbjct: 188 -------SENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFF 240
Query: 380 SASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEA 439
+ F +G+ Y+GPVDGHNV++LV + +R+ ++ GP ++H+VT KGKG AEA
Sbjct: 241 DPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDL--DGPTILHIVTTKGKGLSYAEA 298
Query: 440 AADRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLN 499
HG KFDP TG+ S +++ F E++ + A+TD + + AM G+GL
Sbjct: 299 DPIYWHGPAKFDPATGEY--VPSSAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLV 356
Query: 500 YFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLP 559
F + P R DVGIAE+ AVT AAG+A +G++P AIYS+FLQR YDQV+HDV ++ L
Sbjct: 357 EFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAYDQVLHDVAIEHLN 416
Query: 560 VRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSC 619
V F +DRAG+VGADG TH G FD++F+ +P + + P D AEL M+ A D P
Sbjct: 417 VTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDGPFA 475
Query: 620 FRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDI 679
R+PRGN P L+ G+ L GD V IL G + + AA L
Sbjct: 476 IRYPRGN---TAQVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP---- 528
Query: 680 SVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKL 738
V V +ARF KPLD +++R++ LITVE+ + VGGFG V L + +
Sbjct: 529 GVGVVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMNLHP---TV 585
Query: 739 RSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776
R + +PD + +H + +G+ + I TVL+ LG
Sbjct: 586 RVLGIPDEFQEHATAESVHARAGIDAPAIR-TVLAELG 622
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 148/647 (22%), Positives = 265/647 (40%), Gaps = 72/647 (11%)
Query: 160 LEQLAAELRADIVNSVSKTG-GHLSANLGVVEL--TLALHRVF-------NTPDDKIIWD 209
L+ A LR + + + G GH ++ E+ L H + N +D+ +
Sbjct: 11 LKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLS 70
Query: 210 VGHQA------YVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263
GH A + +N + +S L G P +++ D ++ S+ GL
Sbjct: 71 KGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDV-----ATGSLGQGL 125
Query: 264 GMAVARDILGK-----NNNVISVIGDGAMTAGQAYEAMNNAGF--LDANLIVVLNDNKQV 316
G A GK + V ++GDG ++ G +EAM A LD NL+ +L+ N+
Sbjct: 126 GAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLD-NLVAILDINRLG 184
Query: 317 SLPTATLDGPATPVGXXXXXXXXXXXXTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376
A L + + E + K G H+ A + + +
Sbjct: 185 QSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEE----LCKAFGQAKHQPTAIIAKTFK 240
Query: 377 GLISASGSTFFEELGLYYIGPVDGHNVEDLVT-IFQRVKEMPAPGPVLIHVVTEKGKGYP 435
G G T E+ ++ P+ + E ++ I+ +++ + T + P
Sbjct: 241 G----RGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKKI------LATPPQEDAP 290
Query: 436 PAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGG 495
+ A RM + + K G + T+ + + ++L K D+I+A+
Sbjct: 291 SVDIANIRMPSLPSY--KVGDKIATR-------KAYGQALAKLGHASDRIIALDGDTKNS 341
Query: 496 TGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIYSSFLQRGYDQVVHDVD 554
T F+K PDR + IAEQ+ V+ A G A+ PFC+ +++F R +DQ+
Sbjct: 342 TFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQI-RMAA 400
Query: 555 LQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613
+ + + G+ +G DGP+ D+ +P V PSD V AA
Sbjct: 401 ISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAA-- 458
Query: 614 DDRPSCF-RFPRGNGIGAVLPPNNKGTPLEIGKGRILMEG--DRVAILGYGSIVQQCVLA 670
+ + CF R R A++ NN+ ++G+ +++++ D+V ++G G + + + A
Sbjct: 459 NTKGICFIRTSRPEN--AIIYNNNED--FQVGQAKVVLKSKDDQVTVIGAGVTLHEALAA 514
Query: 671 ANMLKSQDISVTVADARFCKPLDTDLI--RQLANEHEILITVEEGSVGGFGSHVCHFLTL 728
A +LK + I++ V D KPLD LI A + IL + GG G V
Sbjct: 515 AELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVS----- 569
Query: 729 SGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 775
S ++ P + + +R G PA+ L+ G+ I+ V L+
Sbjct: 570 SAVVGEPGITVTHLAVNRVPRSGKPAELLKMFGIDRDAIAQAVRGLI 616
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 147/643 (22%), Positives = 263/643 (40%), Gaps = 72/643 (11%)
Query: 160 LEQLAAELRADIVNSVSKTG-GHLSANLGVVEL--TLALHRVF-------NTPDDKIIWD 209
L+ A LR + + + G GH ++ E+ L H + N +D+ +
Sbjct: 13 LKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLS 72
Query: 210 VGHQA------YVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263
GH A + +N + +S L G P +++ D ++ S+ GL
Sbjct: 73 KGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDV-----ATGSLGQGL 127
Query: 264 GMAVARDILGK-----NNNVISVIGDGAMTAGQAYEAMNNAGF--LDANLIVVLNDNKQV 316
G A GK + V ++GDG ++ G +EAM A LD NL+ +L+ N+
Sbjct: 128 GAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLD-NLVAILDINRLG 186
Query: 317 SLPTATLDGPATPVGXXXXXXXXXXXXTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376
A L + + E + K G H+ A + + +
Sbjct: 187 QSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEE----LCKAFGQAKHQPTAIIAKTFK 242
Query: 377 GLISASGSTFFEELGLYYIGPVDGHNVEDLVT-IFQRVKEMPAPGPVLIHVVTEKGKGYP 435
G G T E+ ++ P+ + E ++ I+ +++ + T + P
Sbjct: 243 G----RGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKKI------LATPPQEDAP 292
Query: 436 PAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGG 495
+ A RM + + K G + T+ + + ++L K D+I+A+
Sbjct: 293 SVDIANIRMPSLPSY--KVGDKIATR-------KAYGQALAKLGHASDRIIALDGDTKNS 343
Query: 496 TGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIYSSFLQRGYDQVVHDVD 554
T F+K PDR + IAEQ+ V+ A G A+ PFC+ +++F R +DQ+
Sbjct: 344 TFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQI-RMAA 402
Query: 555 LQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613
+ + + G+ +G DGP+ D+ +P V PSD V AA
Sbjct: 403 ISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAA-- 460
Query: 614 DDRPSCF-RFPRGNGIGAVLPPNNKGTPLEIGKGRILMEG--DRVAILGYGSIVQQCVLA 670
+ + CF R R A++ NN+ ++G+ +++++ D+V ++G G + + + A
Sbjct: 461 NTKGICFIRTSRPEN--AIIYNNNED--FQVGQAKVVLKSKDDQVTVIGAGVTLHEALAA 516
Query: 671 ANMLKSQDISVTVADARFCKPLDTDLI--RQLANEHEILITVEEGSVGGFGSHVCHFLTL 728
A +LK + I++ V D KPLD LI A + IL + GG G V
Sbjct: 517 AELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVS----- 571
Query: 729 SGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 771
S ++ P + + +R G PA+ L+ G+ I+ V
Sbjct: 572 SAVVGEPGITVTHLAVNRVPRSGKPAELLKMFGIDRDAIAQAV 614
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 129/272 (47%), Gaps = 37/272 (13%)
Query: 474 SLIKEAETDDKIVAIHAAMG--GGTGL---NYFQKRFPDRCFDVGIAEQHAVTFAAGLAS 528
+L +E E D+++V + +G GG L +++ P+R D + E + FA G+A
Sbjct: 60 ALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAM 119
Query: 529 EGVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMD-RAGLV--------GADGPTHC 578
G+KP I + F+ G D++++ + KL R + +A LV G H
Sbjct: 120 AGLKPVAEIQFVDFIWLGADELLNHI--AKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHS 177
Query: 579 GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCF-------RFPRGNGIGAV 631
+ + F+ P +VV+ PS ++ AA+ D P F R PR
Sbjct: 178 NSPEAIFVHT-PGLVVVMPSTPYNAKGLL-KAAIRGDDPVVFLEPKILYRAPREE----- 230
Query: 632 LPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKP 691
+P + +EIGK R+ EGD V ++ YG++V + + AA +K+ SV V D + P
Sbjct: 231 VPEGD--YVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVKA---SVEVVDLQTLNP 285
Query: 692 LDTD-LIRQLANEHEILITVEEGSVGGFGSHV 722
LD D +++ ++ ++I + GG G+ V
Sbjct: 286 LDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEV 317
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 119/291 (40%), Gaps = 24/291 (8%)
Query: 462 SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKRFPDRCFDVGIAE 516
S +T + + +E E D+K+ + + G ++K R D I+E
Sbjct: 12 SLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISE 71
Query: 517 QHAVTFAAGLASEGVKPFCAIYS-SFLQRGYDQVVHDV--------DLQKLPVRFAMDRA 567
A G A G++P C + +F + DQV++ LQ +P+ F
Sbjct: 72 MGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNG 131
Query: 568 GLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNG 627
G H F + C P + V++P + + ++ +A ++ G
Sbjct: 132 ASAGV-AAQHSQCFAAWYGHC-PGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYG 189
Query: 628 IGAVLPP--NNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVAD 685
+ PP +K + IGK +I +G + ++ + V C+ AA +L + + V +
Sbjct: 190 VPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVIN 249
Query: 686 ARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGP 735
R +P+D + I + L+TVE G G G+ +C + I++GP
Sbjct: 250 MRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEIC-----ARIMEGP 295
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 105/246 (42%), Gaps = 20/246 (8%)
Query: 503 KRFPD-RCFDVGIAEQHAVTFAAGLASEGVKPFCAIYS-SFLQRGYDQVVHDV------- 553
K++ D R D I+E A G A G++P C + +F + DQV++
Sbjct: 45 KKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMS 104
Query: 554 -DLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV 612
LQ +P+ F G H F + C P + V++P + + ++ +A
Sbjct: 105 GGLQPVPIVFRGPNGASAGV-AAQHSQCFAAWYGHC-PGLKVVSPWNSEDAKGLIKSAIR 162
Query: 613 IDDRPSCFRFPRGNGIGAVLPP--NNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLA 670
++ G+ PP +K + IGK +I +G + ++ + V C+ A
Sbjct: 163 DNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEA 222
Query: 671 ANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLS 729
A +L + + V + R +P+D + I + L+TVE G G G+ +C +
Sbjct: 223 AAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEIC-----A 277
Query: 730 GILDGP 735
I++GP
Sbjct: 278 RIMEGP 283
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 125/306 (40%), Gaps = 31/306 (10%)
Query: 465 LTYTQYFAESLIKEAETDDKIVAIHAAMG--GGTGL---NYFQKRFPDRCFDVGIAEQHA 519
+T Q +L +E D ++V + +G GG L QK PDR D ++E
Sbjct: 4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 63
Query: 520 VTFAAGLASEGVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC 578
V A G+A+ G++P I ++ ++ G+DQ+V V KL R + P+
Sbjct: 64 VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQV--AKLRYRSGGQFTAPLVVRMPSGG 121
Query: 579 GAFDVTFMSCLPN-----------MVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRG-- 625
G S P + V P D L+ AA+ D+ P F P+
Sbjct: 122 GVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLK----AAIRDEDPVVFLEPKRLY 177
Query: 626 NGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVAD 685
+ +P + P IGK + EG + ++ YG+++ + + AA L +S V D
Sbjct: 178 RSVKEEVPEEDYTLP--IGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLD 235
Query: 686 ARFCKPLDTD-LIRQLANEHEILITVEEGSVGGFGSHVCHFLT---LSGILDGPLKLRSM 741
R P D + ++ +A +++ + F S V + L +L P+++
Sbjct: 236 LRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGF 295
Query: 742 VLPDRY 747
P Y
Sbjct: 296 DTPYPY 301
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase
pdb|1NI4|D Chain D, Human Pyruvate Dehydrogenase
Length = 341
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 112/276 (40%), Gaps = 24/276 (8%)
Query: 477 KEAETDDKIVAIHAAMGGGTGL-----NYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGV 531
+E E D+K+ + + G ++K R D I+E A G A G+
Sbjct: 27 EELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEXGFAGIAVGAAXAGL 86
Query: 532 KPFCAIYS-SFLQRGYDQVVHDV--------DLQKLPVRFAMDRAGLVGADGPTHCGAFD 582
+P C + +F + DQV++ LQ +P+ F G H F
Sbjct: 87 RPICEFXTFNFSXQAIDQVINSAAKTYYXSGGLQPVPIVFRGPNGASAGV-AAQHSQCFA 145
Query: 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPP--NNKGTP 640
+ C P + V++P + + ++ +A ++ G+ PP +K
Sbjct: 146 AWYGHC-PGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELXYGVPFEFPPEAQSKDFL 204
Query: 641 LEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQL 700
+ IGK +I +G + ++ + V C+ AA +L + + V + R +P D + I
Sbjct: 205 IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINXRTIRPXDXETIEAS 264
Query: 701 ANEHEILITVEEGSVG-GFGSHVCHFLTLSGILDGP 735
+ L+TVE G G G+ +C + I +GP
Sbjct: 265 VXKTNHLVTVEGGWPQFGVGAEIC-----ARIXEGP 295
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 324
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 23/250 (9%)
Query: 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL----NYFQKRF-PDRCFDVGIAEQHA 519
+T Q ++L E + D ++ +G G+ Q F DR FD +AE
Sbjct: 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGI 62
Query: 520 VTFAAGLASEGVKPFCAI-YSSFLQRGYDQVVHDVDLQK--------LPVRFAMDRAGLV 570
A GLA +G +P I + F+ D + + + +P+ G
Sbjct: 63 GGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGG-- 120
Query: 571 GADGPT-HCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCF--RFPRGNG 627
G P H + + ++ P + V+ PS + ++ +A+ D+ P F
Sbjct: 121 GVHTPELHSDSLE-GLVAQQPGLKVVIPSTPYDAKGLL-ISAIRDNDPVIFLEHLKLYRS 178
Query: 628 IGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687
+P P IGK I EG + I+ YG++V + + AA L+ + IS V D R
Sbjct: 179 FRQEVPEGEYTIP--IGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLR 236
Query: 688 FCKPLDTDLI 697
+PLD + I
Sbjct: 237 TVQPLDIETI 246
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 325
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 23/250 (9%)
Query: 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL----NYFQKRF-PDRCFDVGIAEQHA 519
+T Q ++L E + D ++ +G G+ Q F DR FD +AE
Sbjct: 4 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGI 63
Query: 520 VTFAAGLASEGVKPFCAI-YSSFLQRGYDQVVHDVDLQK--------LPVRFAMDRAGLV 570
A GLA +G +P I + F+ D + + + +P+ G
Sbjct: 64 GGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGG-- 121
Query: 571 GADGPT-HCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCF--RFPRGNG 627
G P H + + ++ P + V+ PS + ++ +A+ D+ P F
Sbjct: 122 GVHTPELHSDSLE-GLVAQQPGLKVVIPSTPYDAKGLL-ISAIRDNDPVIFLEHLKLYRS 179
Query: 628 IGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687
+P P IGK I EG + I+ YG++V + + AA L+ + IS V D R
Sbjct: 180 FRQEVPEGEYTIP--IGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLR 237
Query: 688 FCKPLDTDLI 697
+PLD + I
Sbjct: 238 TVQPLDIETI 247
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Query: 530 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM--DRAGLVGADGPTHCGAFDVTFMS 587
G KPF + +F + + L K+P F D GL G DGPTH V +
Sbjct: 472 GYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASLR 529
Query: 588 CLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGR 647
+PN+ V P+D E + T AV PSC F R N + + + +E G G
Sbjct: 530 LIPNLDVWRPADTVETA-VAWTYAVAHQHPSCLIFSRQN-LAFNARTDAQLANVEKG-GY 586
Query: 648 ILMEGD------RVAILGYGSIVQQCVLAANMLKSQDISVTV 683
+L + D ++ ++ GS V+ + A L Q I+ V
Sbjct: 587 VLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARV 628
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 29/209 (13%)
Query: 138 PPTP-LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLAL 195
PP P LD+ + + M S +A +RA +++V + GH +G+ E+ +AL
Sbjct: 23 PPVPRFLDSFS-GLDMTTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVAL 81
Query: 196 ---HRVFNTPD------DKIIWDVGHQA---YVHKILTGRRSRMNTMRKTSGL----AGF 239
H N + D+ + GH + Y LTG + ++ L G
Sbjct: 82 WSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGH 141
Query: 240 PKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNN----------VISVIGDGAMTA 289
P+ + G ++ +GMA+ +L N +GDG +
Sbjct: 142 PEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGXLME 201
Query: 290 GQAYEAMNNAGFLDANLIVVLNDNKQVSL 318
G ++EA + AG L N ++ L D+ +S+
Sbjct: 202 GISHEACSLAGTLKLNKLIALYDDNGISI 230
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Query: 530 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM--DRAGLVGADGPTHCGAFDVTFMS 587
G KPF + +F + + L K+P F D GL G DGPTH V +
Sbjct: 472 GYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASLR 529
Query: 588 CLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGR 647
+PN+ V P+D E + T AV PSC F R N + + + +E G G
Sbjct: 530 LIPNLDVWRPADTVETA-VAWTYAVAHQHPSCLIFSRQN-LAFNARTDAQLANVEKG-GY 586
Query: 648 ILMEGD------RVAILGYGSIVQQCVLAANMLKSQDISVTV 683
+L + D ++ ++ GS V+ + A L Q I+ V
Sbjct: 587 VLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARV 628
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 29/209 (13%)
Query: 138 PPTP-LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLAL 195
PP P LD+ + + M S +A +RA +++V + GH +G+ E+ +AL
Sbjct: 23 PPVPRFLDSFS-GLDMTTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVAL 81
Query: 196 ---HRVFNTPD------DKIIWDVGHQA---YVHKILTGRRSRMNTMRKTSGL----AGF 239
H N + D+ + GH + Y LTG + ++ L G
Sbjct: 82 WSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGH 141
Query: 240 PKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNN----------VISVIGDGAMTA 289
P+ + G ++ +GMA+ +L N +GDG +
Sbjct: 142 PEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLME 201
Query: 290 GQAYEAMNNAGFLDANLIVVLNDNKQVSL 318
G ++EA + AG L N ++ L D+ +S+
Sbjct: 202 GISHEACSLAGTLKLNKLIALYDDNGISI 230
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 10/160 (6%)
Query: 530 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRF--AMDRAGLVGADGPTHCGAFDVTFMS 587
G+KP+ + F + + L K PV + D GL G DGPTH V +
Sbjct: 427 GIKPYGGTFLVFSDYSRNAIRXSA-LXKQPVVHVXSHDSIGL-GEDGPTHQPIEHVPSLR 484
Query: 588 CLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGR 647
+PN+ V P+D E A D PS R N V + I +G
Sbjct: 485 LIPNLSVWRPADTIETXIAWKEAVKSKDTPSVXVLTRQNLXPVV---QTQHQVANIARGG 541
Query: 648 ILMEGD---RVAILGYGSIVQQCVLAANMLKSQDISVTVA 684
L++ + ++ I+ GS V+ V AN + + I + VA
Sbjct: 542 YLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNVA 581
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 38/245 (15%)
Query: 501 FQK-RFPDRCFDVGIAEQHAVTFAAGLA--SEGVKPFCAIYSSF--LQRGYDQVVHDVDL 555
FQK +R G+ E G+A S G P+CA + F RG ++ L
Sbjct: 407 FQKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISA---L 463
Query: 556 QKLPVRFAM--DRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613
+ V + M D GL G DGPTH + +PN++++ P+D E A +
Sbjct: 464 SEAGVIYVMTHDSIGL-GEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLN 522
Query: 614 DDRPSCFRFPRGNGIGAVLPPNNKGTPLE-IGKGRILMEGDRVA------ILGYGSIVQQ 666
RPS R P+ GT +E + KG + + ++G GS ++
Sbjct: 523 RKRPSILALSRQK------LPHLPGTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEI 576
Query: 667 CVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE---------ILITVEEGSVGG 717
AA+ L+ + +V R + +L + ++E++ I++E GS G
Sbjct: 577 AAKAADELRKEGKTV-----RVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLG 631
Query: 718 FGSHV 722
+ +V
Sbjct: 632 WQKYV 636
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL 310
G G + G G+A+A GK+ +++ GDGA GQ +EA N A I +
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFIC 197
Query: 311 NDNK 314
+N+
Sbjct: 198 ENNR 201
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 562 FAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621
F D G VG DGPTH ++ PN + P+D E + A+ D PS F
Sbjct: 439 FTHDSIG-VGEDGPTHQPIEQLSTFRAXPNFLTFRPADGVENV-KAWQIALNADIPSAFV 496
Query: 622 FPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVA---ILGYGSIVQQCVLAANMLKSQD 678
R L N+ ++ G L++ + A +L GS V C+ +AN L+ Q
Sbjct: 497 LSRQK-----LKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQG 551
Query: 679 ISVTV 683
+ V
Sbjct: 552 FACNV 556
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 22/181 (12%)
Query: 160 LEQLAAELRADIVNSVSK-TGGHLSANLGVVEL--TLALHRVFNTPD------DKIIWDV 210
L++ A LR + V K GH A LG+ ++ L+ H N + D++++
Sbjct: 6 LQEQANTLRFLSADXVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSG 65
Query: 211 GHQA---YVHKILTGRRSRMNTMRKTSGL----AGFPKREE-SVHDAFGAGHSSTSISAG 262
GH + Y L+G + ++ L G P+ V A G + + G
Sbjct: 66 GHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVG 125
Query: 263 LGMAV--ARDILGKN---NNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVS 317
A A+++LG + + + + GDG + G +YEA + AG + +++ D+ +S
Sbjct: 126 FAXAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNIS 185
Query: 318 L 318
+
Sbjct: 186 I 186
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 562 FAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621
F D G VG DGPTH ++ PN + P+D E + A+ D PS F
Sbjct: 442 FTHDSIG-VGEDGPTHQPIEQLSTFRAXPNFLTFRPADGVENV-KAWQIALNADIPSAFV 499
Query: 622 FPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVA---ILGYGSIVQQCVLAANMLKSQD 678
R L N+ ++ G L++ + A +L GS V C+ +AN L+ Q
Sbjct: 500 LSRQK-----LKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQG 554
Query: 679 ISVTV 683
+ V
Sbjct: 555 FACNV 559
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 22/181 (12%)
Query: 160 LEQLAAELRADIVNSVSK-TGGHLSANLGVVEL--TLALHRVFNTPD------DKIIWDV 210
L++ A LR + V K GH A LG+ ++ L+ H N + D++++
Sbjct: 9 LQEQANTLRFLSADXVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSG 68
Query: 211 GHQA---YVHKILTGRRSRMNTMRKTSGL----AGFPKREE-SVHDAFGAGHSSTSISAG 262
GH + Y L+G + ++ L G P+ V A G + + G
Sbjct: 69 GHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVG 128
Query: 263 LGMAV--ARDILGKN---NNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVS 317
A A+++LG + + + + GDG + G +YEA + AG + +++ D+ +S
Sbjct: 129 FAXAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNIS 188
Query: 318 L 318
+
Sbjct: 189 I 189
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL 310
G G + G G+A+A GK+ +++ GDGA GQ +EA N A I +
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 197
Query: 311 NDNK 314
+N+
Sbjct: 198 ENNR 201
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL 310
G G + G G+A+A GK+ +++ GDGA GQ +EA N A I +
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 311 NDNK 314
+N+
Sbjct: 215 ENNR 218
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL 310
G G + G G+A+A GK+ +++ GDGA GQ +EA N A I +
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 311 NDNK 314
+N+
Sbjct: 215 ENNR 218
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL 310
G G + G G+A+A GK+ +++ GDGA GQ +EA N A I +
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 311 NDNK 314
+N+
Sbjct: 215 ENNR 218
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL 310
G G + G G+A+A GK+ +++ GDGA GQ +EA N A I +
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 311 NDNK 314
+N+
Sbjct: 215 ENNR 218
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 508 RCFDVGIAEQHAVTFAAGL-ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDR 566
R G+ E GL A +G+ PF + +F+ V + A
Sbjct: 403 RYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHD 462
Query: 567 AGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGN 626
+ VG DGPTH V + +PN+ V+ PSD+ E A A P+ R N
Sbjct: 463 SIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQN 522
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 28/193 (14%)
Query: 156 STEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHR---VFNTPD------DKI 206
S E + L ADIV GH +G+ ++ L +N+ D D+
Sbjct: 5 SIEKVANCIRCLAADIVQG--GKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRF 62
Query: 207 IWDVGHQAYVHKILTGRRSRMNTMRKTSGL-------AGFPKREESVHDAFGAGHSSTSI 259
+ GH + L TM G G P+R + G I
Sbjct: 63 VMSNGHGCALQYALLHMAGYNLTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGI 122
Query: 260 SAGLGMAVARDILGKNNN----------VISVIGDGAMTAGQAYEAMNNAGFLDANLIVV 309
+ +G+A+A L N GDG + G EA++ AG L ++V
Sbjct: 123 ANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIV 182
Query: 310 LNDNKQVSLPTAT 322
+ D+ +S+ +T
Sbjct: 183 IYDSNYISIDGST 195
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 14/187 (7%)
Query: 504 RFPDRCFDVGIAEQHAVTFAAGLASEGV--KPFCAIYSSFLQRGYDQVVHDVDLQKLPVR 561
+ R GI E G+++ G KP+ + +F+ V L PV
Sbjct: 404 NYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVI 462
Query: 562 FAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCF 620
+ + VG DGPTH + LPN+ V P+D E+ + PS
Sbjct: 463 WVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSII 522
Query: 621 RFPRGNGIGAVLPPNNKGTPLE-IGKGRILME---GDRVAILGYGSIVQQCVLAANMLKS 676
R N P +G+ +E KG +++ + ++ GS V V AA L +
Sbjct: 523 ALSRQN------LPQLEGSSIESASKGGYVLQDVANPDIILVATGSEVSLSVEAAKTLAA 576
Query: 677 QDISVTV 683
++I V
Sbjct: 577 KNIKARV 583
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 14/187 (7%)
Query: 504 RFPDRCFDVGIAEQHAVTFAAGLASEGV--KPFCAIYSSFLQRGYDQVVHDVDLQKLPVR 561
+ R GI E G+++ G KP+ + +F+ V L PV
Sbjct: 406 NYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVI 464
Query: 562 FAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCF 620
+ + VG DGPTH + LPN+ V P+D E+ + PS
Sbjct: 465 WVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSII 524
Query: 621 RFPRGNGIGAVLPPNNKGTPLE-IGKGRILME---GDRVAILGYGSIVQQCVLAANMLKS 676
R N P +G+ +E KG +++ + ++ GS V V AA L +
Sbjct: 525 ALSRQN------LPQLEGSSIESASKGGYVLQDVANPDIILVATGSEVSLSVEAAKTLAA 578
Query: 677 QDISVTV 683
++I V
Sbjct: 579 KNIKARV 585
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 14/187 (7%)
Query: 504 RFPDRCFDVGIAEQHAVTFAAGLASEGV--KPFCAIYSSFLQRGYDQVVHDVDLQKLPVR 561
+ R GI E G+++ G KP+ + +F+ V L PV
Sbjct: 406 NYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVI 464
Query: 562 FAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCF 620
+ + VG DGPTH + LPN+ V P+D E+ + PS
Sbjct: 465 WVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSII 524
Query: 621 RFPRGNGIGAVLPPNNKGTPLE-IGKGRILME---GDRVAILGYGSIVQQCVLAANMLKS 676
R N P +G+ +E KG +++ + ++ GS V V AA L +
Sbjct: 525 ALSRQN------LPQLEGSSIESASKGGYVLQDVANPDIILVATGSEVSLSVEAAKTLAA 578
Query: 677 QDISVTV 683
++I V
Sbjct: 579 KNIKARV 585
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314
G+A+ + GK I+ GDG + G YE +N AG A I V+ +N+
Sbjct: 154 GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 204
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314
G+A+ + GK I+ GDG + G YE +N AG A I V+ +N+
Sbjct: 153 GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 203
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314
G+A+ + GK I+ GDG + G YE +N AG A I V+ +N+
Sbjct: 154 GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 204
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 27/185 (14%)
Query: 161 EQLAAELRADIVNSVSKT-GGHLSANLGVVELTLALHRVF--NTPD-------DKIIWDV 210
++LA +RA +++V K GH A +G+ ++ L R F + P D+ +
Sbjct: 4 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSN 63
Query: 211 GHQA---YVHKILTGRRSRMNTMRKTSGL----AGFPKREESVHDAFGAGHSSTSISAGL 263
GH + Y LTG M ++ L G P+ ++ G I+ +
Sbjct: 64 GHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGKTAGVETTTGPLGQGIANAV 123
Query: 264 GMAVARDILGKNNN----------VISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDN 313
GMA+A L N + +GDG M G ++E + AG L ++ D+
Sbjct: 124 GMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDD 183
Query: 314 KQVSL 318
+S+
Sbjct: 184 NGISI 188
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 530 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVR-FAMDRAGLVGADGPTHCGAFDVTFMSC 588
G P+ + + F++ + V +++ V + D GL G DGPTH V +
Sbjct: 425 GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL-GEDGPTHQPVEQVASLRV 483
Query: 589 LPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGN 626
PNM P D+ E D P+ R N
Sbjct: 484 TPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQN 521
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314
G+A+ + GK I+ GDG + G Y+ +N AG A I V+ +N+
Sbjct: 153 GVALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNR 203
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 37/190 (19%)
Query: 161 EQLAAELRADIVNSVSKT-GGHLSANLGVVELTLALHRVF--NTPD-------DKIIWDV 210
++LA +RA +++V K GH A +G+ ++ L R F + P D+ +
Sbjct: 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSN 64
Query: 211 GHQA---YVHKILTGRRSRMNTMR-------KTSG--LAGFPKREESVHDAFGAGHSSTS 258
GH + Y LTG M ++ KT G G+ E+ G G
Sbjct: 65 GHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQG----- 119
Query: 259 ISAGLGMAVARDILGKNNN----------VISVIGDGAMTAGQAYEAMNNAGFLDANLIV 308
I+ +GMA+A L N + +GDG M G ++E + AG L ++
Sbjct: 120 IANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLI 179
Query: 309 VLNDNKQVSL 318
D+ +S+
Sbjct: 180 AFYDDNGISI 189
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 530 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVR-FAMDRAGLVGADGPTHCGAFDVTFMSC 588
G P+ + + F++ + V +++ V + D GL G DGPTH V +
Sbjct: 426 GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL-GEDGPTHQPVEQVASLRV 484
Query: 589 LPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGN 626
PNM P D+ E D P+ R N
Sbjct: 485 TPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQN 522
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 8/135 (5%)
Query: 555 LQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613
L +LPV + + VG DGPTH + + PN+ V+ P+D E + A
Sbjct: 475 LXQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAXPNVSVIRPADGNESVAAWRLALES 534
Query: 614 DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR-----VAILGYGSIVQQCV 668
++P+ R + L T ++ KG ++ + V +L GS V V
Sbjct: 535 TNKPTALVLTRQD--LPTLEGAKDDTYEKVAKGAYVVSASKKETADVILLATGSEVSLAV 592
Query: 669 LAANMLKSQDISVTV 683
A L + +V
Sbjct: 593 EAQKALAVDGVDASV 607
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 570 VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIG 629
+G DGPTH + + PN+ V+ P+D E + A + P+ R +
Sbjct: 461 LGEDGPTHQPVEHLXSLRAXPNLFVIRPADAYETFYAWLVALRRKEGPTALVLTR-QAVP 519
Query: 630 AVLPPNNKGTPLEIGKGRIL--MEGDRVAILGYGSIVQQCVLAANMLKSQDISVTV 683
+ P +G + G +L +E + ++ GS V + A +L+ + + V V
Sbjct: 520 LLSPEKARGL---LRGGYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRVRV 572
>pdb|4HPZ|A Chain A, Crystal Structure Of A Tale Protein Reveals An Extended
N-terminal Dna Binding Region
Length = 463
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAA 524
T D++VAI + +GG L Q+ P C D G+ Q V A+
Sbjct: 143 TPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPQQVVAIAS 186
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASE 529
T D++VAI + GG L Q+ P C D G+ Q V A+ + +
Sbjct: 211 TPDQVVAIASHDGGKQALETVQRLLPVLCQDHGLTPQQVVAIASNIGGK 259
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFA 523
T D++VAI + GG L Q+ P C D G+ AV A
Sbjct: 347 TPDQVVAIASHDGGKQALETVQRLLPVLCQDHGLTPAQAVAIA 389
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAA 524
T D++VAI + GG L Q+ P C D G+ + V A+
Sbjct: 279 TPDQVVAIASNDGGKQALETVQRLLPVLCQDHGLTPEQVVAIAS 322
>pdb|3UGM|A Chain A, Structure Of Tal Effector Pthxo1 Bound To Its Dna Target
Length = 1047
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGL----ASEGVKPFCA 536
T D++VAI + +GG L Q+ P C D G+ V A+ + A E V+
Sbjct: 833 TQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLP 892
Query: 537 IYSSFLQRGYDQVV 550
+ DQVV
Sbjct: 893 VLCQDHGLTLDQVV 906
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYS 539
T D++VAI + GG L Q+ P C D G+ V A+ + ++ A S
Sbjct: 934 TPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLS 992
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 481 TDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAA 524
T D++VAI + +GG L Q+ P C D G+ V A+
Sbjct: 867 TPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIAS 910
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 77/205 (37%), Gaps = 37/205 (18%)
Query: 501 FQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQ-----RGYDQVVHDVDL 555
+ + R G+ E +G+ G P A +FLQ R ++ +D+
Sbjct: 426 YTAHWYGRTLHFGVREHAMGAILSGIVLHG--PTRAYGGTFLQFSDYMRPAVRLAALMDI 483
Query: 556 QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDD 615
+ V + D GL G DGPTH ++ + +P + V+ P+D E + T
Sbjct: 484 DTIYV-WTHDSIGL-GEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTI----- 536
Query: 616 RPSCFRFPRGNGIGAV-LPPNNKGTPLEIGK--------GRILM--------EGDRVAIL 658
R NG G V L +G P+ G G +L E V ++
Sbjct: 537 ------LARRNGSGPVGLILTRQGVPVLDGTDAEGVARGGYVLSDAGGLQPGEEPDVILI 590
Query: 659 GYGSIVQQCVLAANMLKSQDISVTV 683
GS VQ V A +L DI V
Sbjct: 591 ATGSEVQLAVAAQTLLADNDILARV 615
>pdb|1FDR|A Chain A, Flavodoxin Reductase From E. Coli
Length = 248
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 590 PNMVVMAPSDEAELMHMVATAAVIDDRPSC---FRFPRGNGIGAVLPPNNKGTPLEIGKG 646
P + + P DE +++ A V+D+ P C + G IG L G L+ K
Sbjct: 77 PRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDRFKN 136
Query: 647 RILMEGDRVAI-LGYGSIVQQ 666
+L+ R A L Y ++Q+
Sbjct: 137 LVLVHAARYAADLSYLPLMQE 157
>pdb|2XNJ|A Chain A, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
pdb|2XNJ|B Chain B, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
Length = 266
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 590 PNMVVMAPSDEAELMHMVATAAVIDDRPSC---FRFPRGNGIGAVLPPNNKGTPLEIGKG 646
P + + P DE +++ A V+D+ P C + G IG L G L+ K
Sbjct: 96 PRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDRFKN 155
Query: 647 RILMEGDRVAI-LGYGSIVQQ 666
+L+ R A L Y ++Q+
Sbjct: 156 LVLVHAARYAADLSYLPLMQE 176
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 167 LRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILT 221
+R D ++SV +TG HL+ H FN P +I W AY ++L
Sbjct: 127 IRLDDLDSVGRTGRHLTL------FEXXAHHAFNYPGKEIYWKNETVAYCTELLN 175
>pdb|3BZG|A Chain A, Uvde Ph4.4
Length = 301
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 744 PDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776
P +Y++ GSP ++ E L+ SA +LSLLG
Sbjct: 123 PGQYVNPGSPDPEVVERSLAELRYSARLLSLLG 155
>pdb|3C0Q|A Chain A, Uvde E175a
Length = 301
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 744 PDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776
P +Y++ GSP ++ E L+ SA +LSLLG
Sbjct: 123 PGQYVNPGSPDPEVVERSLAELRYSARLLSLLG 155
>pdb|2J6V|B Chain B, Crystal Structure Of The Dna Repair Enzyme Uv Damage
Endonuclease
Length = 279
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 744 PDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776
P +Y++ GSP ++ E L+ SA +LSLLG
Sbjct: 102 PGQYVNPGSPDPEVVERSLAELRYSARLLSLLG 134
>pdb|3C0S|A Chain A, Uvde 3 Metals
Length = 301
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 744 PDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776
P +Y++ GSP ++ E L+ SA +LSLLG
Sbjct: 123 PGQYVNPGSPDPEVVERSLAELRYSARLLSLLG 155
>pdb|3BZJ|A Chain A, Uvde K229l
Length = 301
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 744 PDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776
P +Y++ GSP ++ E L+ SA +LSLLG
Sbjct: 123 PGQYVNPGSPDPEVVERSLAELRYSARLLSLLG 155
>pdb|2J6V|A Chain A, Crystal Structure Of The Dna Repair Enzyme Uv Damage
Endonuclease
Length = 282
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 744 PDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776
P +Y++ GSP ++ E L+ SA +LSLLG
Sbjct: 105 PGQYVNPGSPDPEVVERSLAELRYSARLLSLLG 137
>pdb|3UNB|M Chain M, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|AA Chain a, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|OO Chain o, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|3 Chain 3, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|M Chain M, Mouse Constitutive 20s Proteasome
pdb|3UNE|AA Chain a, Mouse Constitutive 20s Proteasome
pdb|3UNE|OO Chain o, Mouse Constitutive 20s Proteasome
pdb|3UNE|3 Chain 3, Mouse Constitutive 20s Proteasome
pdb|3UNF|M Chain M, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|AA Chain a, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|M Chain M, Mouse 20s Immunoproteasome
pdb|3UNH|AA Chain a, Mouse 20s Immunoproteasome
Length = 219
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 213 QAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVH--DAFGAGHSSTSISAGLGMAVARD 270
+++ + + RRS+MN + T + G+ E + D G + + S++ G G +A+
Sbjct: 89 HSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQP 148
Query: 271 IL 272
+L
Sbjct: 149 LL 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,004,811
Number of Sequences: 62578
Number of extensions: 967060
Number of successful extensions: 2226
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2134
Number of HSP's gapped (non-prelim): 80
length of query: 784
length of database: 14,973,337
effective HSP length: 107
effective length of query: 677
effective length of database: 8,277,491
effective search space: 5603861407
effective search space used: 5603861407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)