Query 003948
Match_columns 784
No_of_seqs 417 out of 2659
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 14:50:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1154 Dxs Deoxyxylulose-5-ph 100.0 1E-147 3E-152 1227.4 62.9 621 140-778 2-625 (627)
2 PLN02225 1-deoxy-D-xylulose-5- 100.0 6E-143 1E-147 1237.9 68.4 630 132-783 68-698 (701)
3 PLN02582 1-deoxy-D-xylulose-5- 100.0 3E-136 6E-141 1192.3 72.0 652 132-783 23-674 (677)
4 PLN02234 1-deoxy-D-xylulose-5- 100.0 1E-131 3E-136 1143.6 61.4 577 132-740 56-632 (641)
5 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 1E-124 2E-129 1099.1 69.2 615 143-775 1-616 (617)
6 PRK12571 1-deoxy-D-xylulose-5- 100.0 1E-123 3E-128 1093.1 69.5 629 137-780 3-632 (641)
7 PRK12315 1-deoxy-D-xylulose-5- 100.0 3E-116 7E-121 1022.2 63.4 577 142-775 2-580 (581)
8 PRK05444 1-deoxy-D-xylulose-5- 100.0 3E-111 7E-116 983.4 62.4 577 137-775 1-580 (580)
9 KOG0523 Transketolase [Carbohy 100.0 4E-101 8E-106 850.2 42.1 605 140-782 2-632 (632)
10 PTZ00089 transketolase; Provis 100.0 4.6E-96 1E-100 863.5 56.3 540 159-777 5-660 (661)
11 PRK12753 transketolase; Review 100.0 2E-95 4E-100 856.6 57.5 542 161-775 5-663 (663)
12 PLN02790 transketolase 100.0 4.5E-95 1E-99 854.2 58.1 535 167-775 1-654 (654)
13 PRK05899 transketolase; Review 100.0 1.1E-92 2.4E-97 834.6 56.4 546 155-775 3-624 (624)
14 PRK12754 transketolase; Review 100.0 7.2E-92 1.6E-96 821.5 56.8 543 161-775 5-663 (663)
15 TIGR00232 tktlase_bact transke 100.0 1.6E-91 3.5E-96 823.9 55.5 539 162-775 2-653 (653)
16 TIGR03186 AKGDH_not_PDH alpha- 100.0 8.1E-87 1.8E-91 785.1 56.2 615 137-778 51-861 (889)
17 COG0021 TktA Transketolase [Ca 100.0 5.3E-87 1.1E-91 746.4 51.8 546 157-776 3-663 (663)
18 PRK09405 aceE pyruvate dehydro 100.0 3.1E-85 6.6E-90 771.8 57.1 577 138-778 58-864 (891)
19 PRK13012 2-oxoacid dehydrogena 100.0 2.3E-83 5E-88 759.2 57.4 575 137-778 65-869 (896)
20 PF13292 DXP_synthase_N: 1-deo 100.0 1.9E-72 4E-77 578.1 15.1 270 143-428 1-270 (270)
21 TIGR00759 aceE pyruvate dehydr 100.0 1.2E-66 2.6E-71 606.4 50.8 613 137-778 51-858 (885)
22 COG3958 Transketolase, C-termi 100.0 7E-67 1.5E-71 537.8 33.7 304 464-775 6-312 (312)
23 CHL00144 odpB pyruvate dehydro 100.0 4.4E-57 9.6E-62 491.9 35.3 306 465-779 4-327 (327)
24 PRK09212 pyruvate dehydrogenas 100.0 7.2E-56 1.6E-60 483.1 35.8 306 464-777 3-325 (327)
25 PLN02683 pyruvate dehydrogenas 100.0 1.7E-55 3.7E-60 483.9 36.5 309 464-778 26-353 (356)
26 PRK11892 pyruvate dehydrogenas 100.0 2.5E-54 5.5E-59 487.2 36.4 302 463-775 140-462 (464)
27 PTZ00182 3-methyl-2-oxobutanat 100.0 5.3E-54 1.2E-58 471.9 34.8 308 462-775 32-355 (355)
28 COG2609 AceE Pyruvate dehydrog 100.0 1E-52 2.3E-57 467.8 41.3 611 137-778 54-860 (887)
29 COG0022 AcoB Pyruvate/2-oxoglu 100.0 1.3E-50 2.9E-55 420.2 28.9 305 465-776 2-323 (324)
30 PRK05261 putative phosphoketol 100.0 6.7E-47 1.5E-51 442.4 49.2 521 179-775 49-741 (785)
31 COG3959 Transketolase, N-termi 100.0 2.5E-46 5.4E-51 372.3 23.7 222 155-431 5-243 (243)
32 KOG0524 Pyruvate dehydrogenase 100.0 1.2E-42 2.6E-47 351.6 23.8 306 463-775 33-358 (359)
33 cd02007 TPP_DXS Thiamine pyrop 100.0 6E-43 1.3E-47 355.3 21.4 195 179-434 1-195 (195)
34 PF00456 Transketolase_N: Tran 100.0 8.8E-44 1.9E-48 386.5 15.8 232 161-448 2-261 (332)
35 PRK09404 sucA 2-oxoglutarate d 100.0 1.8E-40 4E-45 396.5 43.8 512 154-728 185-884 (924)
36 cd02017 TPP_E1_EcPDC_like Thia 100.0 1.6E-41 3.4E-46 369.5 24.8 230 161-446 5-334 (386)
37 cd02012 TPP_TK Thiamine pyroph 100.0 1.1E-38 2.4E-43 337.5 23.5 228 165-448 1-245 (255)
38 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 4.2E-37 9.1E-42 365.9 38.0 417 252-728 314-890 (929)
39 KOG0525 Branched chain alpha-k 100.0 1.3E-35 2.8E-40 296.2 16.5 304 463-776 39-361 (362)
40 cd07033 TPP_PYR_DXS_TK_like Py 100.0 1E-33 2.2E-38 278.1 19.4 154 470-624 2-156 (156)
41 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 4.4E-31 9.6E-36 261.5 17.0 153 469-624 1-167 (167)
42 PF02779 Transket_pyr: Transke 100.0 6.4E-31 1.4E-35 263.7 11.1 163 464-627 2-175 (178)
43 smart00861 Transket_pyr Transk 100.0 1.1E-27 2.5E-32 237.7 18.5 159 466-625 1-167 (168)
44 COG3957 Phosphoketolase [Carbo 99.9 9.7E-23 2.1E-27 230.2 32.6 470 179-709 60-693 (793)
45 COG1071 AcoA Pyruvate/2-oxoglu 99.9 5.6E-23 1.2E-27 222.6 21.3 225 154-437 23-269 (358)
46 CHL00149 odpA pyruvate dehydro 99.9 1.5E-22 3.2E-27 222.3 24.1 229 149-437 11-267 (341)
47 PLN02269 Pyruvate dehydrogenas 99.9 3.1E-22 6.6E-27 220.6 20.8 199 178-437 58-267 (362)
48 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 2.3E-21 4.9E-26 209.5 23.8 202 177-436 23-235 (293)
49 PLN02374 pyruvate dehydrogenas 99.9 1.2E-21 2.7E-26 219.8 20.8 200 178-437 114-333 (433)
50 TIGR03182 PDH_E1_alph_y pyruva 99.9 5.2E-21 1.1E-25 208.3 21.1 203 178-437 30-242 (315)
51 PF00676 E1_dh: Dehydrogenase 99.9 4.5E-21 9.7E-26 207.4 18.0 203 177-437 21-233 (300)
52 PF02780 Transketolase_C: Tran 99.9 1.1E-22 2.4E-27 192.1 4.4 123 644-767 1-124 (124)
53 TIGR03181 PDH_E1_alph_x pyruva 99.8 1.2E-19 2.7E-24 199.6 24.0 194 180-437 53-254 (341)
54 PRK07119 2-ketoisovalerate fer 99.8 1.6E-18 3.5E-23 191.3 26.2 253 500-776 42-350 (352)
55 TIGR03336 IOR_alpha indolepyru 99.8 7.9E-19 1.7E-23 206.8 24.8 245 507-774 46-335 (595)
56 cd02011 TPP_PK Thiamine pyroph 99.8 7.7E-19 1.7E-23 180.5 16.1 167 210-435 2-209 (227)
57 PRK08659 2-oxoglutarate ferred 99.8 3.8E-17 8.2E-22 181.9 26.0 247 504-774 46-375 (376)
58 KOG0225 Pyruvate dehydrogenase 99.8 2.5E-18 5.4E-23 180.1 14.5 199 178-437 87-295 (394)
59 PRK09622 porA pyruvate flavodo 99.8 3.2E-16 7E-21 176.3 29.7 254 507-776 57-382 (407)
60 PRK09627 oorA 2-oxoglutarate-a 99.7 2.1E-16 4.5E-21 175.6 24.6 244 505-774 46-375 (375)
61 PRK08366 vorA 2-ketoisovalerat 99.7 9E-15 2E-19 163.2 29.9 204 513-720 55-328 (390)
62 cd02016 TPP_E1_OGDC_like Thiam 99.7 3.8E-16 8.2E-21 164.5 15.1 203 178-436 11-253 (265)
63 PRK08367 porA pyruvate ferredo 99.7 3.3E-14 7E-19 159.1 27.9 246 513-776 56-374 (394)
64 TIGR03710 OAFO_sf 2-oxoacid:ac 99.6 6.4E-15 1.4E-19 172.2 21.8 218 507-726 237-537 (562)
65 cd00568 TPP_enzymes Thiamine p 99.6 2.9E-14 6.3E-19 140.7 15.4 164 194-428 5-168 (168)
66 KOG1182 Branched chain alpha-k 99.5 2.6E-14 5.6E-19 148.7 7.8 125 252-431 192-320 (432)
67 cd02013 TPP_Xsc_like Thiamine 99.5 2E-12 4.3E-17 131.9 17.3 132 251-433 51-183 (196)
68 PRK12270 kgd alpha-ketoglutara 99.4 7.7E-11 1.7E-15 138.9 31.7 424 259-749 625-1206(1228)
69 cd02004 TPP_BZL_OCoD_HPCL Thia 99.4 6.9E-13 1.5E-17 132.3 11.1 126 251-428 46-171 (172)
70 PF09364 XFP_N: XFP N-terminal 99.4 1.6E-12 3.4E-17 139.8 14.2 210 179-449 47-306 (379)
71 cd02008 TPP_IOR_alpha Thiamine 99.4 1.9E-12 4.2E-17 130.0 12.8 127 251-428 49-176 (178)
72 cd03371 TPP_PpyrDC Thiamine py 99.4 1.8E-12 3.9E-17 131.4 12.6 121 251-433 46-167 (188)
73 cd02015 TPP_AHAS Thiamine pyro 99.4 2.1E-12 4.6E-17 130.5 12.3 128 251-432 48-177 (186)
74 PRK06163 hypothetical protein; 99.4 9.6E-12 2.1E-16 127.3 17.2 164 184-435 11-179 (202)
75 cd02003 TPP_IolD Thiamine pyro 99.4 4.9E-12 1.1E-16 130.0 12.6 139 251-433 46-188 (205)
76 cd02002 TPP_BFDC Thiamine pyro 99.3 7E-12 1.5E-16 125.6 12.2 130 250-428 47-178 (178)
77 cd02006 TPP_Gcl Thiamine pyrop 99.3 8.7E-12 1.9E-16 127.8 13.0 140 251-432 55-197 (202)
78 cd03372 TPP_ComE Thiamine pyro 99.3 9.4E-12 2E-16 125.2 13.0 119 251-433 40-159 (179)
79 COG4231 Indolepyruvate ferredo 99.3 2.1E-10 4.5E-15 130.9 23.5 249 507-778 58-356 (640)
80 cd02010 TPP_ALS Thiamine pyrop 99.3 1.3E-11 2.7E-16 124.1 12.3 127 250-430 45-171 (177)
81 PF02775 TPP_enzyme_C: Thiamin 99.3 4.5E-12 9.7E-17 124.0 8.5 130 249-426 24-153 (153)
82 cd02014 TPP_POX Thiamine pyrop 99.3 1.5E-11 3.2E-16 123.6 11.9 126 251-430 49-174 (178)
83 cd02001 TPP_ComE_PpyrDC Thiami 99.3 1.4E-11 3.1E-16 121.4 11.4 116 252-431 41-157 (157)
84 TIGR03297 Ppyr-DeCO2ase phosph 99.3 1.3E-10 2.8E-15 129.0 20.3 168 186-433 172-340 (361)
85 TIGR02176 pyruv_ox_red pyruvat 99.3 5.3E-10 1.2E-14 140.1 27.2 250 509-776 54-380 (1165)
86 TIGR03846 sulfopy_beta sulfopy 99.3 3.8E-11 8.2E-16 121.1 12.5 118 252-432 41-159 (181)
87 cd02005 TPP_PDC_IPDC Thiamine 99.3 9.5E-11 2.1E-15 118.4 15.1 124 251-430 48-175 (183)
88 COG0674 PorA Pyruvate:ferredox 99.2 7.4E-10 1.6E-14 123.2 22.7 210 505-720 46-326 (365)
89 cd02009 TPP_SHCHC_synthase Thi 99.2 1.2E-11 2.7E-16 123.9 7.7 127 251-429 49-175 (175)
90 COG0028 IlvB Thiamine pyrophos 99.2 3.4E-11 7.4E-16 140.5 10.9 128 251-431 406-533 (550)
91 cd06586 TPP_enzyme_PYR Pyrimid 99.2 1.9E-10 4.1E-15 111.9 13.6 125 498-624 26-154 (154)
92 PRK06112 acetolactate synthase 99.2 2.5E-10 5.4E-15 134.9 16.1 128 251-431 435-562 (578)
93 TIGR02418 acolac_catab acetola 99.2 1.5E-10 3.2E-15 135.7 12.8 128 251-432 406-533 (539)
94 PRK08322 acetolactate synthase 99.2 1.2E-09 2.6E-14 128.3 20.0 129 251-433 404-532 (547)
95 PRK08266 hypothetical protein; 99.2 1.7E-10 3.7E-15 135.3 12.7 129 251-432 400-528 (542)
96 PRK06546 pyruvate dehydrogenas 99.2 1.6E-10 3.6E-15 136.3 12.4 128 251-432 406-533 (578)
97 cd03375 TPP_OGFOR Thiamine pyr 99.1 1.7E-10 3.7E-15 117.5 10.8 133 253-429 51-184 (193)
98 cd03376 TPP_PFOR_porB_like Thi 99.1 1.7E-10 3.7E-15 121.0 10.9 139 252-429 61-200 (235)
99 PRK07064 hypothetical protein; 99.1 1.6E-10 3.4E-15 135.6 11.6 125 253-430 405-529 (544)
100 PRK07524 hypothetical protein; 99.1 2.3E-10 5E-15 134.0 12.7 129 251-433 405-533 (535)
101 PRK08199 thiamine pyrophosphat 99.1 2.2E-10 4.7E-15 134.8 12.4 128 251-431 413-540 (557)
102 PRK06965 acetolactate synthase 99.1 2.4E-10 5.1E-15 135.3 12.7 129 251-432 435-565 (587)
103 PRK09124 pyruvate dehydrogenas 99.1 2E-10 4.4E-15 135.6 11.8 128 251-432 406-533 (574)
104 PRK11864 2-ketoisovalerate fer 99.1 5.9E-10 1.3E-14 119.9 13.9 140 251-429 67-207 (300)
105 PRK09107 acetolactate synthase 99.1 2.9E-10 6.4E-15 134.6 12.7 126 251-430 428-555 (595)
106 PRK08611 pyruvate oxidase; Pro 99.1 2.8E-10 6E-15 134.4 12.4 128 251-432 406-533 (576)
107 PRK06457 pyruvate dehydrogenas 99.1 2.7E-10 5.9E-15 133.8 12.0 127 251-430 394-520 (549)
108 PRK08978 acetolactate synthase 99.1 3.2E-10 6.9E-15 133.1 12.6 129 251-432 399-528 (548)
109 PRK05858 hypothetical protein; 99.1 4E-10 8.6E-15 132.2 13.3 128 251-432 405-533 (542)
110 PLN02470 acetolactate synthase 99.1 3.1E-10 6.7E-15 134.3 12.2 137 251-432 424-560 (585)
111 PRK06725 acetolactate synthase 99.1 3.9E-10 8.4E-15 133.0 12.6 127 251-430 420-546 (570)
112 PRK07979 acetolactate synthase 99.1 4E-10 8.7E-15 133.0 12.7 176 185-430 371-549 (574)
113 PRK06456 acetolactate synthase 99.1 3.8E-10 8.3E-15 133.1 12.5 127 251-430 419-546 (572)
114 PRK07418 acetolactate synthase 99.1 3.7E-10 8E-15 134.4 12.3 129 251-432 432-562 (616)
115 PRK08979 acetolactate synthase 99.1 4E-10 8.6E-15 133.0 12.4 175 185-430 371-547 (572)
116 TIGR01504 glyox_carbo_lig glyo 99.1 3.9E-10 8.6E-15 133.4 12.0 138 251-431 416-557 (588)
117 PRK06048 acetolactate synthase 99.1 4.8E-10 1E-14 132.0 12.6 127 251-431 412-540 (561)
118 PRK06466 acetolactate synthase 99.1 4.7E-10 1E-14 132.4 12.4 128 251-431 421-550 (574)
119 CHL00099 ilvB acetohydroxyacid 99.1 5.2E-10 1.1E-14 132.4 12.5 129 251-430 428-556 (585)
120 PRK08527 acetolactate synthase 99.1 5.2E-10 1.1E-14 131.8 12.4 129 251-432 412-541 (563)
121 PRK09259 putative oxalyl-CoA d 99.1 1.9E-09 4.2E-14 127.1 17.1 128 251-433 422-550 (569)
122 PRK06882 acetolactate synthase 99.1 5.9E-10 1.3E-14 131.6 12.7 130 251-432 419-549 (574)
123 PRK08617 acetolactate synthase 99.1 4.9E-10 1.1E-14 131.7 11.4 128 251-432 412-539 (552)
124 PRK07710 acetolactate synthase 99.1 7.2E-10 1.6E-14 130.8 12.7 128 251-432 422-551 (571)
125 PRK12474 hypothetical protein; 99.1 5.8E-10 1.3E-14 130.1 11.8 128 253-428 389-518 (518)
126 TIGR03457 sulphoacet_xsc sulfo 99.1 7.4E-10 1.6E-14 130.9 12.8 131 251-433 428-561 (579)
127 PRK06154 hypothetical protein; 99.1 3.6E-10 7.8E-15 133.1 10.0 129 251-432 429-558 (565)
128 PRK07092 benzoylformate decarb 99.1 7.4E-10 1.6E-14 129.6 12.5 124 252-428 406-529 (530)
129 PRK07789 acetolactate synthase 99.1 5.7E-10 1.2E-14 132.7 11.6 127 251-430 445-577 (612)
130 PRK07586 hypothetical protein; 99.1 6.8E-10 1.5E-14 129.4 12.0 127 253-428 385-514 (514)
131 PRK08273 thiamine pyrophosphat 99.1 7.2E-10 1.6E-14 131.4 12.2 131 251-432 413-549 (597)
132 TIGR02720 pyruv_oxi_spxB pyruv 99.1 7.6E-10 1.6E-14 130.7 12.3 129 251-431 406-534 (575)
133 PRK08155 acetolactate synthase 99.1 6.3E-10 1.4E-14 131.1 11.6 128 251-431 417-545 (564)
134 PRK11269 glyoxylate carboligas 99.0 7.4E-10 1.6E-14 131.2 11.7 140 251-431 417-558 (591)
135 PRK13030 2-oxoacid ferredoxin 99.0 2.7E-08 5.9E-13 123.2 25.4 298 465-777 20-396 (1159)
136 PRK07282 acetolactate synthase 99.0 7.3E-10 1.6E-14 130.6 11.3 126 251-430 416-542 (566)
137 TIGR03393 indolpyr_decarb indo 99.0 6.3E-10 1.4E-14 130.4 10.7 123 251-430 402-528 (539)
138 TIGR03254 oxalate_oxc oxalyl-C 99.0 5E-09 1.1E-13 123.3 18.2 126 251-432 415-541 (554)
139 TIGR00118 acolac_lg acetolacta 99.0 8.8E-10 1.9E-14 129.7 11.6 128 251-432 410-539 (558)
140 PRK06276 acetolactate synthase 99.0 1.3E-09 2.8E-14 129.0 12.1 126 251-430 417-544 (586)
141 PRK08327 acetolactate synthase 99.0 1.1E-09 2.4E-14 129.1 10.3 136 251-429 428-567 (569)
142 PRK07525 sulfoacetaldehyde ace 99.0 3.4E-09 7.3E-14 125.6 13.3 131 251-433 433-566 (588)
143 PRK09193 indolepyruvate ferred 99.0 5.5E-08 1.2E-12 120.2 23.8 292 465-777 28-404 (1165)
144 PLN02573 pyruvate decarboxylas 99.0 2E-09 4.3E-14 127.2 10.8 123 251-430 426-553 (578)
145 PRK11869 2-oxoacid ferredoxin 98.9 3E-09 6.5E-14 113.8 10.0 134 253-429 60-193 (280)
146 PRK05778 2-oxoglutarate ferred 98.9 4.7E-09 1E-13 113.6 10.8 134 253-429 70-203 (301)
147 cd02018 TPP_PFOR Thiamine pyro 98.9 4.8E-09 1E-13 110.3 10.6 140 251-429 62-203 (237)
148 PRK07449 2-succinyl-5-enolpyru 98.9 4.5E-09 9.8E-14 124.0 10.9 128 251-430 423-550 (568)
149 PRK09628 oorB 2-oxoglutarate-a 98.9 6.9E-09 1.5E-13 111.1 10.2 136 253-431 68-203 (277)
150 PRK11866 2-oxoacid ferredoxin 98.9 8.9E-09 1.9E-13 110.3 10.3 134 252-429 58-192 (279)
151 TIGR03394 indol_phenyl_DC indo 98.9 6.5E-09 1.4E-13 121.8 10.0 123 251-431 401-523 (535)
152 PRK13029 2-oxoacid ferredoxin 98.8 1.6E-07 3.5E-12 115.9 21.4 300 465-775 31-416 (1186)
153 PRK11865 pyruvate ferredoxin o 98.8 3.9E-08 8.5E-13 106.0 13.9 152 250-436 66-220 (299)
154 PRK11867 2-oxoglutarate ferred 98.8 2.2E-08 4.7E-13 107.9 10.5 134 253-430 69-203 (286)
155 TIGR02177 PorB_KorB 2-oxoacid: 98.7 5E-08 1.1E-12 104.8 10.0 134 253-429 53-186 (287)
156 KOG0451 Predicted 2-oxoglutara 98.7 7.5E-07 1.6E-11 99.5 19.1 247 465-719 564-867 (913)
157 TIGR03336 IOR_alpha indolepyru 98.7 5.8E-08 1.3E-12 115.1 10.6 127 252-428 402-529 (595)
158 COG3961 Pyruvate decarboxylase 98.6 6.8E-08 1.5E-12 108.3 8.4 124 253-430 411-536 (557)
159 PLN02980 2-oxoglutarate decarb 98.5 2.3E-07 4.9E-12 121.2 11.1 131 251-431 757-891 (1655)
160 PF03894 XFP: D-xylulose 5-pho 98.5 3.5E-06 7.5E-11 83.1 14.7 144 469-612 2-178 (179)
161 PF01855 POR_N: Pyruvate flavo 98.3 1.7E-06 3.6E-11 90.6 8.5 114 509-625 38-155 (230)
162 COG3962 Acetolactate synthase 98.3 3.3E-06 7.3E-11 93.3 9.7 136 246-430 437-576 (617)
163 KOG4166 Thiamine pyrophosphate 98.2 1.7E-05 3.6E-10 86.9 14.3 186 181-434 467-652 (675)
164 KOG0450 2-oxoglutarate dehydro 98.2 0.00017 3.7E-09 83.1 22.7 238 477-718 661-962 (1017)
165 KOG1184 Thiamine pyrophosphate 98.1 4.7E-06 1E-10 93.5 8.1 67 252-324 414-480 (561)
166 COG0567 SucA 2-oxoglutarate de 98.1 0.00027 5.9E-09 84.8 21.4 205 508-719 628-857 (906)
167 KOG1185 Thiamine pyrophosphate 97.9 3.3E-05 7.1E-10 86.3 9.6 133 253-432 430-563 (571)
168 COG1013 PorB Pyruvate:ferredox 97.7 0.00019 4.1E-09 77.8 11.1 131 256-429 73-204 (294)
169 cd07034 TPP_PYR_PFOR_IOR-alpha 97.5 0.0034 7.3E-08 61.7 16.0 114 506-623 41-159 (160)
170 COG4231 Indolepyruvate ferredo 97.5 0.00024 5.1E-09 82.3 8.2 124 255-428 430-553 (640)
171 COG3960 Glyoxylate carboligase 97.3 0.00032 7E-09 75.0 5.7 137 252-430 418-557 (592)
172 KOG0523 Transketolase [Carbohy 97.1 0.00064 1.4E-08 78.1 5.7 58 387-448 201-258 (632)
173 cd03377 TPP_PFOR_PNO Thiamine 97.0 0.0051 1.1E-07 68.2 11.2 114 276-429 152-267 (365)
174 cd07035 TPP_PYR_POX_like Pyrim 96.8 0.0099 2.1E-07 58.0 10.6 114 507-623 35-154 (155)
175 TIGR03297 Ppyr-DeCO2ase phosph 96.6 0.021 4.5E-07 64.0 12.7 124 502-627 21-155 (361)
176 PRK13030 2-oxoacid ferredoxin 96.5 0.0073 1.6E-07 76.1 9.5 72 252-333 467-538 (1159)
177 PRK09193 indolepyruvate ferred 96.4 0.011 2.4E-07 74.3 9.6 62 252-318 480-541 (1165)
178 PRK13029 2-oxoacid ferredoxin 95.9 0.026 5.7E-07 71.0 9.8 71 253-333 495-565 (1186)
179 TIGR03845 sulfopyru_alph sulfo 95.9 0.24 5.3E-06 49.0 14.5 110 513-625 40-155 (157)
180 COG1165 MenD 2-succinyl-6-hydr 95.9 0.21 4.5E-06 57.9 15.7 193 159-432 352-549 (566)
181 PF02776 TPP_enzyme_N: Thiamin 95.6 0.11 2.3E-06 51.9 10.9 124 499-625 32-162 (172)
182 PF09363 XFP_C: XFP C-terminal 95.0 0.33 7.1E-06 49.7 12.2 116 653-776 35-163 (203)
183 TIGR02176 pyruv_ox_red pyruvat 94.2 0.14 3.1E-06 65.5 9.1 114 276-429 952-1067(1165)
184 cd07039 TPP_PYR_POX Pyrimidine 93.8 0.64 1.4E-05 46.2 11.1 115 508-625 40-159 (164)
185 cd07037 TPP_PYR_MenD Pyrimidin 93.5 0.5 1.1E-05 47.0 9.8 113 508-623 37-161 (162)
186 cd02001 TPP_ComE_PpyrDC Thiami 93.4 0.89 1.9E-05 44.9 11.3 111 503-622 32-152 (157)
187 COG4032 Predicted thiamine-pyr 93.1 0.17 3.7E-06 48.5 5.4 110 514-624 49-163 (172)
188 cd02004 TPP_BZL_OCoD_HPCL Thia 92.9 0.73 1.6E-05 45.8 10.0 116 503-621 35-168 (172)
189 TIGR02418 acolac_catab acetola 92.8 1.1 2.5E-05 52.8 13.2 115 508-625 38-158 (539)
190 PRK07586 hypothetical protein; 92.8 5.1 0.00011 47.1 18.5 116 508-626 41-162 (514)
191 PRK07525 sulfoacetaldehyde ace 92.6 1.2 2.5E-05 53.4 13.0 117 507-626 44-165 (588)
192 PRK08199 thiamine pyrophosphat 92.2 5.8 0.00013 47.1 18.1 113 508-625 48-168 (557)
193 PRK07524 hypothetical protein; 92.0 1.7 3.7E-05 51.3 13.3 115 508-625 41-164 (535)
194 PRK07710 acetolactate synthase 91.9 1.9 4.1E-05 51.4 13.6 144 472-625 19-175 (571)
195 cd07038 TPP_PYR_PDC_IPDC_like 91.4 2 4.4E-05 42.5 11.1 116 506-624 34-162 (162)
196 TIGR03457 sulphoacet_xsc sulfo 91.4 2.1 4.6E-05 51.1 13.2 116 508-626 41-161 (579)
197 PRK12474 hypothetical protein; 91.3 9.4 0.0002 45.0 18.3 116 508-626 45-166 (518)
198 PRK07282 acetolactate synthase 91.2 3.2 7E-05 49.4 14.4 146 472-626 13-171 (566)
199 PRK11864 2-ketoisovalerate fer 90.7 2.8 6E-05 45.9 12.1 103 518-622 73-204 (300)
200 PRK06466 acetolactate synthase 90.4 4.7 0.0001 48.1 14.9 116 507-625 43-164 (574)
201 TIGR00118 acolac_lg acetolacta 90.2 6 0.00013 47.0 15.5 115 508-625 41-161 (558)
202 PRK11866 2-oxoacid ferredoxin 89.8 5 0.00011 43.5 13.1 148 467-622 18-189 (279)
203 PRK07979 acetolactate synthase 89.8 2.3 4.9E-05 50.8 11.6 114 508-626 44-165 (574)
204 cd03376 TPP_PFOR_porB_like Thi 89.8 7.6 0.00016 41.0 14.2 89 531-622 80-197 (235)
205 PRK08155 acetolactate synthase 89.5 6.2 0.00014 46.9 15.0 116 507-625 52-173 (564)
206 cd02014 TPP_POX Thiamine pyrop 89.3 5.1 0.00011 40.1 12.0 120 500-622 35-170 (178)
207 TIGR02177 PorB_KorB 2-oxoacid: 89.2 6.3 0.00014 42.9 13.4 144 468-622 13-183 (287)
208 PRK09107 acetolactate synthase 89.0 8.9 0.00019 46.0 15.8 146 472-626 14-172 (595)
209 PRK08611 pyruvate oxidase; Pro 88.9 9.1 0.0002 45.8 15.8 117 507-626 44-165 (576)
210 PRK07064 hypothetical protein; 88.9 8.8 0.00019 45.4 15.6 115 508-625 43-166 (544)
211 cd02009 TPP_SHCHC_synthase Thi 88.7 4.9 0.00011 40.2 11.4 114 504-621 39-171 (175)
212 PRK05858 hypothetical protein; 88.6 3 6.6E-05 49.3 11.4 117 506-625 42-164 (542)
213 PRK06965 acetolactate synthase 88.6 9.5 0.00021 45.7 15.7 114 507-625 60-181 (587)
214 PRK08322 acetolactate synthase 88.6 9 0.00019 45.3 15.4 113 508-625 40-160 (547)
215 PRK06163 hypothetical protein; 88.5 16 0.00035 37.7 15.2 116 504-623 48-171 (202)
216 PRK08527 acetolactate synthase 88.2 9.3 0.0002 45.5 15.2 115 508-625 43-163 (563)
217 PRK08979 acetolactate synthase 88.2 7.6 0.00017 46.3 14.5 114 507-625 43-164 (572)
218 PRK06457 pyruvate dehydrogenas 88.2 2.7 5.9E-05 49.8 10.6 116 507-625 40-160 (549)
219 PRK09124 pyruvate dehydrogenas 88.1 11 0.00023 45.1 15.6 113 508-625 43-162 (574)
220 cd02018 TPP_PFOR Thiamine pyro 87.6 18 0.00038 38.3 15.2 117 505-622 51-200 (237)
221 cd02015 TPP_AHAS Thiamine pyro 87.5 4.8 0.00011 40.5 10.6 115 504-622 38-171 (186)
222 PRK07789 acetolactate synthase 87.5 11 0.00023 45.4 15.3 116 507-625 70-191 (612)
223 PRK11269 glyoxylate carboligas 87.5 11 0.00024 45.1 15.3 116 507-625 43-165 (591)
224 cd02010 TPP_ALS Thiamine pyrop 87.2 9.7 0.00021 38.2 12.5 117 504-623 36-168 (177)
225 PLN02470 acetolactate synthase 87.0 11 0.00024 45.0 15.0 114 507-625 52-173 (585)
226 TIGR02720 pyruv_oxi_spxB pyruv 87.0 4.2 9E-05 48.6 11.3 117 507-626 39-160 (575)
227 PLN02573 pyruvate decarboxylas 86.7 11 0.00025 45.0 14.8 115 508-626 56-183 (578)
228 COG0028 IlvB Thiamine pyrophos 86.5 16 0.00034 43.6 15.6 121 499-625 33-161 (550)
229 PRK06725 acetolactate synthase 86.4 4.8 0.0001 48.1 11.4 115 507-626 53-175 (570)
230 TIGR01504 glyox_carbo_lig glyo 86.4 5.7 0.00012 47.6 12.0 116 508-626 43-165 (588)
231 PRK07092 benzoylformate decarb 86.3 4.8 0.0001 47.5 11.2 115 507-625 49-171 (530)
232 PRK08617 acetolactate synthase 86.0 4.3 9.3E-05 48.1 10.7 114 507-625 43-164 (552)
233 PRK06546 pyruvate dehydrogenas 86.0 14 0.00031 44.2 15.1 114 507-625 42-162 (578)
234 PRK06456 acetolactate synthase 86.0 4.8 0.0001 48.0 11.1 113 508-625 45-165 (572)
235 PRK09628 oorB 2-oxoglutarate-a 85.9 13 0.00028 40.4 13.2 144 470-622 30-198 (277)
236 PRK07418 acetolactate synthase 85.8 6.2 0.00014 47.5 12.1 116 507-625 61-182 (616)
237 PRK06112 acetolactate synthase 85.8 5.3 0.00011 47.7 11.4 116 507-625 50-171 (578)
238 cd06586 TPP_enzyme_PYR Pyrimid 85.8 4.6 0.0001 38.8 9.0 48 259-314 48-96 (154)
239 PRK08978 acetolactate synthase 85.7 5.1 0.00011 47.5 11.1 113 508-625 40-160 (548)
240 TIGR03846 sulfopy_beta sulfopy 85.6 11 0.00023 38.2 11.9 142 469-622 2-153 (181)
241 PRK06276 acetolactate synthase 85.4 5.6 0.00012 47.6 11.3 115 508-625 40-160 (586)
242 PRK06882 acetolactate synthase 85.4 5.9 0.00013 47.2 11.5 115 508-625 44-164 (574)
243 PRK08273 thiamine pyrophosphat 85.2 8.6 0.00019 46.2 12.8 146 472-626 6-165 (597)
244 PRK08266 hypothetical protein; 84.5 6.2 0.00013 46.7 11.0 116 507-625 44-168 (542)
245 PRK11865 pyruvate ferredoxin o 84.4 21 0.00046 39.1 14.1 103 518-622 73-208 (299)
246 cd03372 TPP_ComE Thiamine pyro 83.5 13 0.00029 37.3 11.5 110 505-622 34-152 (179)
247 PRK07449 2-succinyl-5-enolpyru 83.3 14 0.00031 43.9 13.5 149 470-625 10-174 (568)
248 cd01460 vWA_midasin VWA_Midasi 83.3 10 0.00023 40.8 11.0 62 253-314 135-205 (266)
249 PRK11867 2-oxoglutarate ferred 83.2 18 0.00039 39.4 13.0 145 467-622 28-199 (286)
250 PRK06048 acetolactate synthase 82.9 7.9 0.00017 46.0 11.1 114 507-625 46-167 (561)
251 TIGR03254 oxalate_oxc oxalyl-C 82.8 8.1 0.00018 45.9 11.1 115 508-625 42-164 (554)
252 TIGR00173 menD 2-succinyl-5-en 81.3 19 0.00042 41.3 13.1 115 508-626 40-167 (432)
253 CHL00099 ilvB acetohydroxyacid 81.1 11 0.00023 45.2 11.3 113 508-625 53-173 (585)
254 cd02007 TPP_DXS Thiamine pyrop 80.8 12 0.00026 38.3 10.0 99 518-623 79-188 (195)
255 PRK09259 putative oxalyl-CoA d 80.8 10 0.00022 45.3 10.9 116 507-625 48-171 (569)
256 cd02006 TPP_Gcl Thiamine pyrop 80.7 5 0.00011 41.1 7.3 120 501-622 42-191 (202)
257 cd02003 TPP_IolD Thiamine pyro 80.3 7.2 0.00016 40.1 8.3 114 504-622 36-181 (205)
258 cd02013 TPP_Xsc_like Thiamine 80.1 8.3 0.00018 39.3 8.7 116 504-622 41-176 (196)
259 TIGR03394 indol_phenyl_DC indo 79.8 31 0.00068 40.8 14.6 147 472-626 3-166 (535)
260 cd02012 TPP_TK Thiamine pyroph 78.8 20 0.00042 38.2 11.3 102 519-623 110-225 (255)
261 PRK11869 2-oxoacid ferredoxin 77.9 25 0.00055 38.2 11.9 149 466-622 18-190 (280)
262 COG1071 AcoA Pyruvate/2-oxoglu 77.8 13 0.00027 41.8 9.7 102 517-622 143-258 (358)
263 PRK08327 acetolactate synthase 77.4 16 0.00034 43.6 11.2 115 508-625 52-181 (569)
264 cd03371 TPP_PpyrDC Thiamine py 76.3 57 0.0012 33.1 13.4 112 505-622 40-160 (188)
265 cd00568 TPP_enzymes Thiamine p 75.9 10 0.00022 36.9 7.7 100 519-622 51-166 (168)
266 cd03375 TPP_OGFOR Thiamine pyr 73.1 39 0.00085 34.4 11.3 101 520-622 57-181 (193)
267 cd02002 TPP_BFDC Thiamine pyro 72.9 21 0.00046 35.4 9.2 114 504-621 38-175 (178)
268 cd03028 GRX_PICOT_like Glutare 72.8 8.6 0.00019 34.0 5.6 66 652-721 7-80 (90)
269 cd03027 GRX_DEP Glutaredoxin ( 71.0 10 0.00022 31.9 5.4 65 654-720 2-67 (73)
270 PRK05778 2-oxoglutarate ferred 70.9 21 0.00046 39.1 9.2 102 519-622 75-200 (301)
271 cd02008 TPP_IOR_alpha Thiamine 70.8 24 0.00053 35.2 9.1 100 521-622 58-174 (178)
272 PF02775 TPP_enzyme_C: Thiamin 68.9 26 0.00056 33.9 8.6 112 505-620 17-151 (153)
273 TIGR00365 monothiol glutaredox 68.1 14 0.0003 33.4 6.0 70 652-722 11-85 (97)
274 PRK06154 hypothetical protein; 67.2 42 0.00091 40.1 11.5 119 501-622 416-552 (565)
275 cd07036 TPP_PYR_E1-PDHc-beta_l 66.4 68 0.0015 32.0 11.1 34 387-425 130-164 (167)
276 PRK12315 1-deoxy-D-xylulose-5- 66.1 49 0.0011 39.7 11.7 110 510-623 110-241 (581)
277 PRK05444 1-deoxy-D-xylulose-5- 65.0 33 0.00072 41.1 10.1 101 519-623 122-240 (580)
278 KOG1185 Thiamine pyrophosphate 64.7 32 0.0007 39.8 9.1 151 465-620 380-555 (571)
279 TIGR00204 dxs 1-deoxy-D-xylulo 64.3 56 0.0012 39.5 11.8 50 258-315 364-414 (617)
280 PLN02980 2-oxoglutarate decarb 64.2 71 0.0015 43.3 13.8 113 508-624 341-466 (1655)
281 cd07033 TPP_PYR_DXS_TK_like Py 63.7 77 0.0017 31.0 10.8 48 259-314 52-100 (156)
282 cd07034 TPP_PYR_PFOR_IOR-alpha 63.1 62 0.0013 31.4 10.0 49 262-314 53-101 (160)
283 PF04273 DUF442: Putative phos 62.0 12 0.00025 34.9 4.3 41 387-428 53-95 (110)
284 TIGR02190 GlrX-dom Glutaredoxi 61.8 28 0.0006 29.8 6.5 72 651-726 6-78 (79)
285 PRK12571 1-deoxy-D-xylulose-5- 61.6 65 0.0014 39.2 11.7 49 259-315 374-423 (641)
286 cd07035 TPP_PYR_POX_like Pyrim 61.2 51 0.0011 31.8 9.0 50 258-314 46-96 (155)
287 KOG1145 Mitochondrial translat 59.5 1.2E+02 0.0025 36.1 12.4 40 274-314 225-264 (683)
288 cd02005 TPP_PDC_IPDC Thiamine 59.3 34 0.00074 34.4 7.6 117 504-622 38-171 (183)
289 TIGR03181 PDH_E1_alph_x pyruva 59.0 34 0.00074 38.2 8.2 101 518-622 130-243 (341)
290 PLN02790 transketolase 58.4 42 0.00091 40.9 9.4 77 544-623 153-236 (654)
291 cd03418 GRX_GRXb_1_3_like Glut 58.3 24 0.00052 29.4 5.4 65 655-721 2-68 (75)
292 TIGR03393 indolpyr_decarb indo 58.1 1.5E+02 0.0032 35.2 13.8 113 508-626 41-167 (539)
293 TIGR03845 sulfopyru_alph sulfo 57.6 1.3E+02 0.0027 29.8 11.1 50 257-314 45-95 (157)
294 cd07037 TPP_PYR_MenD Pyrimidin 56.4 59 0.0013 32.3 8.5 48 259-312 48-95 (162)
295 PF00676 E1_dh: Dehydrogenase 55.7 35 0.00075 37.4 7.4 101 520-622 107-222 (300)
296 PLN02582 1-deoxy-D-xylulose-5- 53.5 1.1E+02 0.0025 37.4 11.9 50 258-315 410-460 (677)
297 cd00860 ThrRS_anticodon ThrRS 53.3 59 0.0013 27.9 7.2 58 654-713 3-61 (91)
298 PLN02234 1-deoxy-D-xylulose-5- 52.4 1E+02 0.0022 37.5 11.2 49 259-315 412-461 (641)
299 TIGR02189 GlrX-like_plant Glut 51.3 64 0.0014 29.2 7.3 67 653-721 8-78 (99)
300 cd02000 TPP_E1_PDC_ADC_BCADC T 50.1 59 0.0013 35.3 8.1 88 532-622 127-225 (293)
301 PRK05899 transketolase; Review 49.9 1.4E+02 0.0031 36.1 12.0 88 532-623 151-246 (624)
302 COG2241 CobL Precorrin-6B meth 49.4 86 0.0019 32.7 8.6 93 653-756 95-191 (210)
303 cd07039 TPP_PYR_POX Pyrimidine 48.7 1.2E+02 0.0025 30.1 9.3 48 260-313 52-99 (164)
304 cd01481 vWA_collagen_alpha3-VI 48.0 44 0.00096 33.0 6.2 55 655-712 110-164 (165)
305 PTZ00089 transketolase; Provis 45.8 1.6E+02 0.0036 35.9 11.7 77 544-623 164-247 (661)
306 PF03358 FMN_red: NADPH-depend 44.6 58 0.0013 31.2 6.3 65 663-727 16-94 (152)
307 PF03129 HGTP_anticodon: Antic 44.3 63 0.0014 28.3 6.0 57 654-712 1-61 (94)
308 PRK10638 glutaredoxin 3; Provi 43.9 59 0.0013 28.0 5.6 65 654-720 3-68 (83)
309 cd00858 GlyRS_anticodon GlyRS 43.1 85 0.0018 29.2 7.0 58 653-713 27-87 (121)
310 COG3961 Pyruvate decarboxylase 42.9 1.1E+02 0.0024 35.9 9.0 147 472-625 7-170 (557)
311 PRK12754 transketolase; Review 41.6 1.7E+02 0.0038 35.8 10.9 76 545-623 163-244 (663)
312 TIGR02181 GRX_bact Glutaredoxi 41.1 51 0.0011 27.9 4.8 57 662-722 7-67 (79)
313 TIGR00232 tktlase_bact transke 39.0 1.9E+02 0.0041 35.4 10.8 49 259-314 409-457 (653)
314 PLN02225 1-deoxy-D-xylulose-5- 38.4 2.9E+02 0.0062 34.1 12.0 50 258-315 435-485 (701)
315 PRK11200 grxA glutaredoxin 1; 37.6 1.4E+02 0.0031 25.6 7.1 71 655-728 3-81 (85)
316 PLN02269 Pyruvate dehydrogenas 37.2 1.5E+02 0.0033 33.4 9.0 72 550-623 181-257 (362)
317 COG0075 Serine-pyruvate aminot 36.2 3.3E+02 0.0071 31.1 11.3 82 647-731 75-162 (383)
318 cd03029 GRX_hybridPRX5 Glutare 36.2 1.4E+02 0.003 24.7 6.6 69 654-726 2-71 (72)
319 cd00859 HisRS_anticodon HisRS 35.7 1.3E+02 0.0028 25.3 6.5 56 654-712 3-60 (91)
320 KOG0225 Pyruvate dehydrogenase 35.6 1.7E+02 0.0036 32.7 8.4 90 530-623 185-285 (394)
321 PRK03767 NAD(P)H:quinone oxido 35.3 2.3E+02 0.005 28.8 9.3 67 661-729 13-95 (200)
322 cd01080 NAD_bind_m-THF_DH_Cycl 35.2 90 0.002 31.2 6.1 53 651-711 43-95 (168)
323 cd00861 ProRS_anticodon_short 35.1 1.4E+02 0.003 25.9 6.7 58 654-713 3-64 (94)
324 CHL00149 odpA pyruvate dehydro 35.1 1.4E+02 0.0031 33.4 8.2 90 531-622 157-256 (341)
325 PF02779 Transket_pyr: Transke 34.8 4.7E+02 0.01 26.0 12.4 38 387-427 133-171 (178)
326 cd00738 HGTP_anticodon HGTP an 34.6 1.4E+02 0.003 25.7 6.6 58 654-713 3-64 (94)
327 PF02776 TPP_enzyme_N: Thiamin 34.6 3.3E+02 0.0072 26.8 10.1 48 259-314 52-101 (172)
328 cd03033 ArsC_15kD Arsenate Red 33.9 86 0.0019 29.2 5.4 40 664-704 10-49 (113)
329 PRK15473 cbiF cobalt-precorrin 33.8 2E+02 0.0044 30.6 8.9 61 695-758 155-217 (257)
330 PLN02683 pyruvate dehydrogenas 33.6 3.9E+02 0.0085 30.1 11.5 35 387-426 160-195 (356)
331 TIGR02194 GlrX_NrdH Glutaredox 33.5 74 0.0016 26.5 4.5 55 664-719 9-64 (72)
332 KOG3995 3-hydroxyanthranilate 32.6 26 0.00056 36.1 1.7 27 11-39 87-113 (279)
333 PRK10329 glutaredoxin-like pro 31.5 1.1E+02 0.0024 26.5 5.3 61 655-720 3-66 (81)
334 COG3962 Acetolactate synthase 30.6 3.9E+02 0.0085 31.3 10.5 155 464-624 6-188 (617)
335 PRK10824 glutaredoxin-4; Provi 30.5 1.1E+02 0.0024 28.7 5.5 69 652-721 14-87 (115)
336 TIGR01465 cobM_cbiF precorrin- 30.0 2.2E+02 0.0047 29.4 8.3 62 694-758 145-208 (229)
337 cd06063 H2MP_Cyano-H2up This g 29.8 1.7E+02 0.0036 28.4 6.9 55 655-713 1-61 (146)
338 cd02066 GRX_family Glutaredoxi 29.7 1.6E+02 0.0035 23.3 5.9 63 655-719 2-65 (72)
339 PF03960 ArsC: ArsC family; I 29.4 83 0.0018 28.8 4.5 39 664-703 6-44 (110)
340 cd02017 TPP_E1_EcPDC_like Thia 29.3 5E+02 0.011 29.7 11.3 50 545-597 164-218 (386)
341 PF00456 Transketolase_N: Tran 27.5 2.6E+02 0.0057 31.2 8.7 78 545-625 160-243 (332)
342 PRK12753 transketolase; Review 26.7 4.2E+02 0.0091 32.5 11.0 77 544-623 162-244 (663)
343 PRK10853 putative reductase; P 26.6 93 0.002 29.2 4.3 40 664-704 10-49 (118)
344 cd03035 ArsC_Yffb Arsenate Red 26.4 1.1E+02 0.0023 28.1 4.6 41 664-705 9-49 (105)
345 COG1393 ArsC Arsenate reductas 26.2 1.4E+02 0.0031 28.0 5.5 48 655-704 3-50 (117)
346 cd06068 H2MP_like-1 Putative [ 26.1 2E+02 0.0044 27.7 6.7 54 657-713 2-61 (144)
347 PF14097 SpoVAE: Stage V sporu 25.8 5E+02 0.011 26.3 9.1 73 654-729 1-80 (180)
348 COG0680 HyaD Ni,Fe-hydrogenase 25.4 1.6E+02 0.0034 29.4 5.8 56 653-712 2-64 (160)
349 TIGR03182 PDH_E1_alph_y pyruva 25.3 4.9E+02 0.011 28.6 10.3 88 532-622 133-231 (315)
350 PF00289 CPSase_L_chain: Carba 24.1 2.3E+02 0.0049 26.3 6.3 32 653-687 3-34 (110)
351 KOG2862 Alanine-glyoxylate ami 24.0 6.3E+02 0.014 28.2 10.3 127 647-779 87-230 (385)
352 KOG1184 Thiamine pyrophosphate 23.9 1.1E+02 0.0024 35.9 4.9 149 471-626 6-171 (561)
353 PF00590 TP_methylase: Tetrapy 23.9 1.1E+02 0.0024 30.9 4.7 60 694-756 148-209 (210)
354 PRK08366 vorA 2-ketoisovalerat 23.4 6.1E+02 0.013 29.0 10.8 48 258-314 61-108 (390)
355 COG0426 FpaA Uncharacterized f 23.4 3.5E+02 0.0075 30.9 8.6 48 659-709 256-303 (388)
356 cd06062 H2MP_MemB-H2up Endopep 22.9 2.6E+02 0.0057 26.9 6.8 54 655-712 1-61 (146)
357 cd07038 TPP_PYR_PDC_IPDC_like 22.8 6E+02 0.013 24.9 9.5 47 259-314 48-96 (162)
358 PRK10466 hybD hydrogenase 2 ma 22.6 3.2E+02 0.007 27.0 7.5 56 654-713 2-64 (164)
359 COG0695 GrxC Glutaredoxin and 22.3 2.1E+02 0.0045 24.8 5.4 54 664-717 11-66 (80)
360 PF10740 DUF2529: Protein of u 22.3 1.4E+02 0.003 30.1 4.7 120 600-724 24-157 (172)
361 PRK10026 arsenate reductase; P 22.3 1.4E+02 0.003 29.2 4.6 41 663-704 11-51 (141)
362 TIGR01616 nitro_assoc nitrogen 22.0 1.6E+02 0.0035 28.1 5.0 43 660-703 6-49 (126)
363 PF11823 DUF3343: Protein of u 21.7 1.5E+02 0.0032 25.2 4.2 25 663-687 10-34 (73)
364 PRK07119 2-ketoisovalerate fer 21.6 1.4E+02 0.0031 33.5 5.2 47 258-312 60-106 (352)
365 COG3958 Transketolase, C-termi 21.5 6.7E+02 0.014 27.7 9.9 59 250-315 52-112 (312)
366 cd01452 VWA_26S_proteasome_sub 21.3 1.8E+02 0.0039 29.7 5.4 35 276-310 108-143 (187)
367 COG0655 WrbA Multimeric flavod 21.3 3.4E+02 0.0074 27.7 7.6 69 660-728 13-100 (207)
368 PF00258 Flavodoxin_1: Flavodo 21.2 1.6E+02 0.0036 27.6 5.0 31 660-690 7-37 (143)
369 TIGR00014 arsC arsenate reduct 20.9 1.6E+02 0.0034 27.3 4.6 41 663-704 8-48 (114)
370 cd05125 Mth938_2P1-like Mth938 20.5 1.3E+02 0.0028 28.2 4.0 38 650-687 52-90 (114)
371 COG3105 Uncharacterized protei 20.4 17 0.00037 34.6 -1.9 21 59-79 3-23 (138)
372 PF04430 DUF498: Protein of un 20.1 77 0.0017 29.2 2.3 37 651-687 52-89 (110)
373 TIGR02691 arsC_pI258_fam arsen 20.1 1.8E+02 0.0039 27.6 4.9 88 668-773 41-128 (129)
374 cd03034 ArsC_ArsC Arsenate Red 20.0 1.7E+02 0.0037 27.0 4.7 40 664-704 9-48 (112)
375 cd00115 LMWPc Substituted upda 20.0 2.6E+02 0.0056 26.6 6.1 85 669-775 49-140 (141)
No 1
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=1.3e-147 Score=1227.43 Aligned_cols=621 Identities=56% Similarity=0.932 Sum_probs=594.5
Q ss_pred CCCccCCCCcccccCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHH
Q 003948 140 TPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKI 219 (784)
Q Consensus 140 ~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~ii~~v~~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~ 219 (784)
+|+|++|++|.|||.|+.+||++||+|||..+++.|+++|||+|++||+|||++|||++|+.|.|+||||+|||+|+||+
T Consensus 2 ~~~L~~i~~P~dLk~ls~~eL~~La~EiR~~li~~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 2 YPLLDKINSPADLKKLSIEELPQLADEIREFLLEVVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred cchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHH
Q 003948 220 LTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNA 299 (784)
Q Consensus 220 l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A 299 (784)
||||++.|.|+||.+||+|||+|.||+||.|++||+|+|||+|+|||.|++++|++++|||+||||+++.||+|||||+|
T Consensus 82 LTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~a 161 (627)
T COG1154 82 LTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNA 161 (627)
T ss_pred hcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhc
Q 003948 300 G-FLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL 378 (784)
Q Consensus 300 ~-~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~ 378 (784)
+ ..+.|+|||+|||+| | +++++|+++++|+++++++.|+.+|+..|.+++..|....+...|.++..|++
T Consensus 162 g~~~~~~~iVILNDNeM-S--------Is~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l 232 (627)
T COG1154 162 GADLKSNLIVILNDNEM-S--------ISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGL 232 (627)
T ss_pred hhccCCCEEEEEeCCCc-c--------cCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcc
Confidence 9 456999999999998 3 46899999999999999999999999999999888888899999999999998
Q ss_pred cCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccccccc-ccccc
Q 003948 379 ISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDP-KTGKQ 457 (784)
Q Consensus 379 ~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd~-~~g~~ 457 (784)
+.+. ++||+|||+|++|+||||+++|..+|+.+|+ .++|+++||+|.|||||++||.++.+||++.+||+ ++|..
T Consensus 233 ~~~~--~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd--~~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~~~tg~~ 308 (627)
T COG1154 233 LVPG--TLFEELGFNYIGPIDGHNLEELIPTLKNAKD--LKGPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDPIETGQS 308 (627)
T ss_pred cCch--hhHHHhCCeeECCcCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCChhhcChhhccCCCCCCccccCcc
Confidence 8764 8999999999999999999999999999998 58999999999999999999999999999999996 88887
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCCeeEEEe
Q 003948 458 FKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI 537 (784)
Q Consensus 458 ~~~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~t 537 (784)
.+.+....+|+++|++.|.+++++|++|++|+|+|..++||..|.++||+||||+||||||+|++|+|||++|+|||+++
T Consensus 309 ~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI 388 (627)
T COG1154 309 KKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI 388 (627)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEE
Confidence 76666778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCC
Q 003948 538 YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRP 617 (784)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~P 617 (784)
||+|+||||||++||+|+|++||+|+++|+|++|+||+|||+.+|++|+|+||||+|++|+|++|+..|+.+|+..+++|
T Consensus 389 YSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP 468 (627)
T COG1154 389 YSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGP 468 (627)
T ss_pred ecHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred eEEEcCCCCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHH
Q 003948 618 SCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLI 697 (784)
Q Consensus 618 v~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i 697 (784)
+.||+||++........ ....+++||++++++|.||+|+++|.++..|++|++.|.+.||+++|||+||+||+|++++
T Consensus 469 ~AiRyPrg~~~~~~~~~--~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll 546 (627)
T COG1154 469 VAIRYPRGNGVGVILTP--ELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALL 546 (627)
T ss_pred eEEEecCCCCCCCCccc--ccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHH
Confidence 99999999865543222 1356889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 003948 698 RQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 698 ~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll~ 776 (784)
+++++.++.+||+||+. .||+|+.|++++.+.++. .+++++|+||.|++||+++++++.+|||++.|+++|++++.
T Consensus 547 ~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~---~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l~ 623 (627)
T COG1154 547 LELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGIL---VPVLNLGLPDEFIDHGSPEELLAELGLDAEGIARRILEWLK 623 (627)
T ss_pred HHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCCC---CceEEecCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999998 799999999999998863 78999999999999999999999999999999999999986
Q ss_pred CC
Q 003948 777 RP 778 (784)
Q Consensus 777 ~~ 778 (784)
..
T Consensus 624 ~~ 625 (627)
T COG1154 624 AR 625 (627)
T ss_pred hc
Confidence 54
No 2
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=6.1e-143 Score=1237.86 Aligned_cols=630 Identities=55% Similarity=0.929 Sum_probs=585.2
Q ss_pred ccCCCCCCCCCccCCCCcccccCCCHHHHHHHHHHHHHHHHHHh-hccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCC
Q 003948 132 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSV-SKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDV 210 (784)
Q Consensus 132 ~~~~~~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~ii~~v-~~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~ 210 (784)
+|++++|++|+|++||+|.|||+|+.+||++||+|||.+|++.| +++|||+|++||+|||++|||++||.|+|+||||+
T Consensus 68 ~~~~~~~~~~~L~~i~~P~dlk~L~~~eL~~La~EiR~~li~~v~s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDv 147 (701)
T PLN02225 68 EYCDEKFETPILDSIETPLQLKNLSVKELKLLADEIRTELHSVLWKKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDA 147 (701)
T ss_pred cccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccCCCcCCCccHHHHHHHHHHHhCCCCCceeecc
Confidence 88889999999999999999999999999999999999999999 79999999999999999999999999999999999
Q ss_pred CchHHHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccch
Q 003948 211 GHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAG 290 (784)
Q Consensus 211 GH~~y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG 290 (784)
|||+|+||+||||++.|++ ||.+|++|||+|.||+||.|++||+|++||+|+|||.|++++|++++||+|||||+|+.|
T Consensus 148 gHQ~Y~HKiLTGR~~~f~~-Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgG 226 (701)
T PLN02225 148 VEQTYAHKVLTRRWSAIPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAG 226 (701)
T ss_pred ccccchhhHhcCChhhcCc-cccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhh
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHH
Q 003948 291 QAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (784)
Q Consensus 291 ~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k 370 (784)
|+|||||+|+..+.|+|||+|||+| |+......|...+||+++++|+++++++.|+++|+.+|.++++++.....+..|
T Consensus 227 ma~EaLN~~g~~~~~livILNDN~m-Si~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 305 (701)
T PLN02225 227 QAYEAMSNAGYLDSNMIVILNDSRH-SLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAK 305 (701)
T ss_pred hHHHHHhhhhccCCCEEEEEeCCCC-CCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999998 443222245566799999999999999999999999999999998778888899
Q ss_pred HHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccccc
Q 003948 371 VDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKF 450 (784)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~f 450 (784)
+++++|+++.+.+.++||+||++|++|+||||+++|+++|+++|+.+.++|++|||+|+||+
T Consensus 306 ~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGk------------------ 367 (701)
T PLN02225 306 VDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENR------------------ 367 (701)
T ss_pred HHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCC------------------
Confidence 99999999876545899999999999999999999999999999864459999999999998
Q ss_pred ccccccccCCCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcC
Q 003948 451 DPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG 530 (784)
Q Consensus 451 d~~~g~~~~~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G 530 (784)
|++||+ .+......+|+++|+++|.+++++|++|+++++||+.+++++.|+++||+||||+|||||+|+++|+|||+.|
T Consensus 368 d~~tg~-~~~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G 446 (701)
T PLN02225 368 DAETGK-NIMVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGG 446 (701)
T ss_pred CCCCCC-cCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCC
Confidence 456666 2222335689999999999999999999999999999899999999999999999999999999999999999
Q ss_pred CeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHH
Q 003948 531 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (784)
Q Consensus 531 ~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A 610 (784)
++||+++|++|++||||||++++|++++||+++++++|++|.||+|||+.+|+++||++|||+|++|+|+.|+..|+++|
T Consensus 447 ~kPvv~iystFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A 526 (701)
T PLN02225 447 LKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATA 526 (701)
T ss_pred CEEEEEeehhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEcCCCCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccC
Q 003948 611 AVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCK 690 (784)
Q Consensus 611 ~~~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slk 690 (784)
+..+++|++||+||+..+....+. ..++++++||++++++|+|++||++|+++++|++|+++|+++||+++|||+||+|
T Consensus 527 ~~~~~gPv~IR~pRg~~~~~~~~~-~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ik 605 (701)
T PLN02225 527 AYVTDRPVCFRFPRGSIVNMNYLV-PTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCK 605 (701)
T ss_pred HhcCCCCEEEEecccccCCCCcCC-CCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 876779999999998654322100 1236788999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHH
Q 003948 691 PLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISAT 770 (784)
Q Consensus 691 PlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~ 770 (784)
|||+++|.+++++++.|||||||..||||++|++++.++++.+.+.+++++|+||+|+++|+++++++++|||+++|+++
T Consensus 606 PLD~e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~~GLdae~I~~~ 685 (701)
T PLN02225 606 PLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTGHHIAAT 685 (701)
T ss_pred CCCHHHHHHHHhhcCeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHHhCcCHHHHHHH
Confidence 99999999999999999999999889999999999999875433468999999999999999999999999999999999
Q ss_pred HHHHhcCCccccC
Q 003948 771 VLSLLGRPKEALL 783 (784)
Q Consensus 771 i~~ll~~~~~~~~ 783 (784)
|++++++.+++|.
T Consensus 686 i~~~l~~~~~~~~ 698 (701)
T PLN02225 686 ALSLLGRTREALL 698 (701)
T ss_pred HHHHHhhcccceE
Confidence 9999977777665
No 3
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.9e-136 Score=1192.27 Aligned_cols=652 Identities=76% Similarity=1.231 Sum_probs=606.7
Q ss_pred ccCCCCCCCCCccCCCCcccccCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCC
Q 003948 132 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVG 211 (784)
Q Consensus 132 ~~~~~~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~ii~~v~~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~G 211 (784)
+|+..++++|+|++|+.|.|||+|+.++|+++|.+||+.+++|+++++||+|++||++||+++||++|++|+||||||+|
T Consensus 23 ~~~~~~~~~~~l~~i~~p~dlk~l~~~~l~~la~~iR~~ii~~~~~~~GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~G 102 (677)
T PLN02582 23 EYPSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDKILWDVG 102 (677)
T ss_pred cccCCCCCCchhhhCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCccccHHHHHHHHHHhhCCCCCeEEEECc
Confidence 45444456889999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred chHHHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchh
Q 003948 212 HQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQ 291 (784)
Q Consensus 212 H~~y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~ 291 (784)
||+|+||+++||+++|.+|||.||++|||++.|++++.|++||+|+++|.|+|+|+|+++++++++|||++|||++++|+
T Consensus 103 H~ay~~~~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~ 182 (677)
T PLN02582 103 HQSYPHKILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQ 182 (677)
T ss_pred chHHHHHHHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHH
Q 003948 292 AYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (784)
Q Consensus 292 ~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~ 371 (784)
+|||||+|+.+++|+++|||||+|+|+|+...||.++++|+++++|.+++.++.|..+|+..|.+++.++.....+..|+
T Consensus 183 ~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (677)
T PLN02582 183 AYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKV 262 (677)
T ss_pred HHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999998876678888899
Q ss_pred HHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCcccccc
Q 003948 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFD 451 (784)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd 451 (784)
++..++++.+.+.++||+|||.|+++|||||+++|.++|+++|+.+.++|++||++|+||+||+++|+++.+|||+.+||
T Consensus 263 ~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~~~~~~H~~~~f~ 342 (677)
T PLN02582 263 DEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFD 342 (677)
T ss_pred HHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhcChhhcCCCCCCC
Confidence 99999988765557999999999999999999999999999997422699999999999999999999999999999999
Q ss_pred cccccccCCCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCC
Q 003948 452 PKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGV 531 (784)
Q Consensus 452 ~~~g~~~~~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~ 531 (784)
+++|++.+......+|+++|+++|.+++++|++|+++++||++++++..|+++||+||||+||+||+|+++|+|||+.|+
T Consensus 343 ~~~g~~~~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~fP~R~fdvGIAEq~~vg~AaGLA~~G~ 422 (677)
T PLN02582 343 PATGKQFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQHAVTFAAGLACEGL 422 (677)
T ss_pred cccCCccCCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHcCccccccCcCHHHHHHHHHHHHHCCC
Confidence 99998754333456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHH
Q 003948 532 KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (784)
Q Consensus 532 ~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~ 611 (784)
+||+++|++|++||||||++++|++++||+++++++|++|.||+|||+.+|++++|++|||+|++|+|+.|++.++++|+
T Consensus 423 kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al 502 (677)
T PLN02582 423 KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAA 502 (677)
T ss_pred eEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCeEEEcCCCCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCC
Q 003948 612 VIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKP 691 (784)
Q Consensus 612 ~~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkP 691 (784)
...++|++||++|+..+...+|+....+.+++||++++++|+|++||++|++++.|++|++.|+++||+++|||++|++|
T Consensus 503 ~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkP 582 (677)
T PLN02582 503 AIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVADARFCKP 582 (677)
T ss_pred hCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCC
Confidence 76679999999998643333333222356789999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHH
Q 003948 692 LDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 771 (784)
Q Consensus 692 lD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i 771 (784)
||++++.+++++++.+||+||+..||||++|++++.+++..+.+.+++++|++|+|+++|+++++++++|||++.|+++|
T Consensus 583 lD~~~i~~~~k~~~~vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~~e~I~~~i 662 (677)
T PLN02582 583 LDRALIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLTPSHIAATV 662 (677)
T ss_pred CCHHHHHHHhhhCCEEEEECCCCCCcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHHHhCcCHHHHHHHH
Confidence 99999999999999999999998899999999999998753234689999999999999999999999999999999999
Q ss_pred HHHhcCCccccC
Q 003948 772 LSLLGRPKEALL 783 (784)
Q Consensus 772 ~~ll~~~~~~~~ 783 (784)
+++++.++..++
T Consensus 663 ~~~l~~~~~~~~ 674 (677)
T PLN02582 663 LNVLGQTREALQ 674 (677)
T ss_pred HHHHhccccccc
Confidence 999964444443
No 4
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.4e-131 Score=1143.63 Aligned_cols=577 Identities=71% Similarity=1.176 Sum_probs=542.2
Q ss_pred ccCCCCCCCCCccCCCCcccccCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCC
Q 003948 132 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVG 211 (784)
Q Consensus 132 ~~~~~~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~ii~~v~~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~G 211 (784)
+|+++||+||+||+||+|.|||+|++++|+++|++||+++++++++++||+|++||++||+++||++|+.|+||||||+|
T Consensus 56 ~~~~~~~~~~~l~~i~~p~~~k~l~~~~L~~la~eiR~~ii~~~~~~~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~G 135 (641)
T PLN02234 56 EYYSNRPPTPLLDTINHPMHMKNLSIKELKVLSDELRSDVIFNVSKTGGHLGSNLGVVELTVALHYIFNTPHDKILWDVG 135 (641)
T ss_pred cccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhhcCCCccccchHHHHHHHHHHhcCCCCCeEEEecc
Confidence 88899999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred chHHHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchh
Q 003948 212 HQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQ 291 (784)
Q Consensus 212 H~~y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~ 291 (784)
||+|+||+++||+++|.+|||.||++|||++.|++++.|++||+|+|||+|+|||+|+++++++++|||++||||++||+
T Consensus 136 Hqaya~~~ltgr~~~l~t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~ 215 (641)
T PLN02234 136 HQSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQ 215 (641)
T ss_pred hhHHHHHHHHhhhhhhcccccCCCcCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHH
Q 003948 292 AYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (784)
Q Consensus 292 ~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~ 371 (784)
+|||||+|++.++||++|+|||+++++||...||+++++++++++|+++++++.|.. +.+.
T Consensus 216 ~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~----------------~~~~--- 276 (641)
T PLN02234 216 AYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIR----------------ETSS--- 276 (641)
T ss_pred HHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhccccccc----------------CCHH---
Confidence 999999999888999999999999899998889999999999999999999987621 1222
Q ss_pred HHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCcccccc
Q 003948 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFD 451 (784)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd 451 (784)
++||+|||+|+++|||||+++|.++|+++++.+.++|++||++|+||+||+++|+++.+||++.+||
T Consensus 277 -------------~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~~~H~~~~~~ 343 (641)
T PLN02234 277 -------------TLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFD 343 (641)
T ss_pred -------------HHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCcccCCCCCCC
Confidence 3499999999999999999999999999987534689999999999999999999888999999999
Q ss_pred cccccccCCCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCC
Q 003948 452 PKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGV 531 (784)
Q Consensus 452 ~~~g~~~~~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~ 531 (784)
+++|++.+......+|+++|+++|.+++++||+|+++++||+++++++.|+++||+||||+|||||+|+++|+|||+.|+
T Consensus 344 ~~~g~~~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~ 423 (641)
T PLN02234 344 PETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGL 423 (641)
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcchHHHHHHccccccCCCcCHHHHHHHHHHHHHCCC
Confidence 99998876655567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHH
Q 003948 532 KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (784)
Q Consensus 532 ~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~ 611 (784)
|||+++|++|++||||||++++|++++||+++++++|++|.||+|||+.+|++++|++|||+|++|+|+.|++.++++|+
T Consensus 424 rPvv~~fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~ 503 (641)
T PLN02234 424 KPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAA 503 (641)
T ss_pred eEEEEehHHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred HhCCCCeEEEcCCCCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCC
Q 003948 612 VIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKP 691 (784)
Q Consensus 612 ~~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkP 691 (784)
..+++|++||++|+......+|++.+.+++++||++++++|+|++||++|++++.|++|+++|+++||+++|||++|++|
T Consensus 504 ~~~~~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikP 583 (641)
T PLN02234 504 AIDDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKP 583 (641)
T ss_pred hCCCCCEEEEeecccccccccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCC
Confidence 77779999999998754433443223456789999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEE
Q 003948 692 LDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRS 740 (784)
Q Consensus 692 lD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~ 740 (784)
||++.+.+++++++.+||+||+..||||++|++++.++++++...|+.|
T Consensus 584 lD~~~i~sl~k~~~~vVt~Ee~~~GG~Gs~Va~~l~e~~~~~~~~~~~~ 632 (641)
T PLN02234 584 LDVALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKVYR 632 (641)
T ss_pred CCHHHHHHHHHhCCEEEEECCCCCCcHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999999999999999999999889999999999999998877666654
No 5
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=1e-124 Score=1099.08 Aligned_cols=615 Identities=51% Similarity=0.848 Sum_probs=571.7
Q ss_pred ccCCCCcccccCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhC
Q 003948 143 LDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTG 222 (784)
Q Consensus 143 l~~i~~p~~~k~~~~~~L~~la~~iR~~ii~~v~~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G 222 (784)
|++|++|.|||+|+.++|+++|.+||+++++|+++++||+|++||++||+++||++|+.|+||||||+|||+|+|++++|
T Consensus 1 ~~~i~~p~dl~~l~~~~l~~la~~iR~~~i~~~~~~~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G 80 (617)
T TIGR00204 1 LSLINSPQELRLLSIDELEKLCDELRRYLLESVSASGGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTG 80 (617)
T ss_pred CCCCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred chHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhc
Q 003948 223 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL 302 (784)
Q Consensus 223 ~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~ 302 (784)
|.++|.+||+.||++|||++.|++++.|++||+|+++|.|+|||+|.++++++.+|||++|||+++||++|||||+|+.+
T Consensus 81 ~~~~l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~ 160 (617)
T TIGR00204 81 RREKFSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDL 160 (617)
T ss_pred cHHHhcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhc
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCC
Q 003948 303 DANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISAS 382 (784)
Q Consensus 303 ~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~ 382 (784)
++|+++|||||++ ++ ..+++.++++|+++|.++.|..++...+.+.+.++.....+++|+++.+|+++.+
T Consensus 161 ~l~~i~ii~~N~~-~i--------~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~- 230 (617)
T TIGR00204 161 KTDMIVILNDNEM-SI--------SENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP- 230 (617)
T ss_pred CCCEEEEEECCCc-cc--------CCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc-
Confidence 9999999999996 32 3457789999999999999999999998888766532344788999999998876
Q ss_pred chhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCcccccccccccccCCCC
Q 003948 383 GSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKS 462 (784)
Q Consensus 383 ~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd~~~g~~~~~~~ 462 (784)
.++||+|||+|+++|||||+++|.++|+++++ .++|++||++|+||+||+++|+++.+||+..+|++++++......
T Consensus 231 -~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~--~~~P~~i~~~T~KGkG~~~~e~~~~~~H~~~~~~~~~~~~~~~~~ 307 (617)
T TIGR00204 231 -GTFFEELGFNYIGPVDGHDLLELIETLKNAKK--LKGPVFLHIQTKKGKGYKPAEKDPIGWHGVGPFDLSTGCLPKSKS 307 (617)
T ss_pred -cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCchhhcChhhccCCCCCChhhCCcCCCCC
Confidence 48999999999989999999999999999987 468999999999999999999877789999999998886543333
Q ss_pred chhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHH
Q 003948 463 PTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFL 542 (784)
Q Consensus 463 ~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl 542 (784)
...+|+++|+++|.+++++|++|+++++||++++++++|+++||+||||+||+||+|+++|+|||+.|++||+++|++|+
T Consensus 308 ~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~Fl 387 (617)
T TIGR00204 308 ALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTFL 387 (617)
T ss_pred CCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHHH
Confidence 45689999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 543 QRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 543 ~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
+||+|||++++|++++||+++++++|++|.||+|||+++|+++||++|||+|++|+|+.|++.++++|++..++|+|||+
T Consensus 388 ~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~ 467 (617)
T TIGR00204 388 QRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVRY 467 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99999999999999999999999999889999999999999999999999999999999999999999975569999999
Q ss_pred CCCCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhc
Q 003948 623 PRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN 702 (784)
Q Consensus 623 ~r~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~ 702 (784)
+|+.......++ ..+.+++||++++++|+|++||++|.++++|++|+++|+++||+++|||++|++|||++++.++++
T Consensus 468 ~r~~~~~~~~~~--~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~ 545 (617)
T TIGR00204 468 PRGNAVGVELTP--EPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAA 545 (617)
T ss_pred ccCCcCCcccCC--ccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHh
Confidence 998653322222 236788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 003948 703 EHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 775 (784)
Q Consensus 703 ~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll 775 (784)
+++++|||||+. .||||++|++++.++++ +.+++++|++|.|+++|+++++++++|||+++|+++|++++
T Consensus 546 k~~~vvtvEE~~~~GGlGs~v~~~l~~~~~---~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I~~~i~~~~ 616 (617)
T TIGR00204 546 SHEKLVTVEENAIMGGAGSAVLEFLMDQNK---LVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGMEAKILAWL 616 (617)
T ss_pred hcCeEEEEECCCCccChHHHHHHHHHhcCC---CCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 999999999998 69999999999999863 46899999999999999999999999999999999999875
No 6
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.2e-123 Score=1093.13 Aligned_cols=629 Identities=57% Similarity=0.930 Sum_probs=582.3
Q ss_pred CCCCCCccCCCCcccccCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHH
Q 003948 137 KPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYV 216 (784)
Q Consensus 137 ~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~ii~~v~~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~ 216 (784)
+|-.++|++|++|.|||+|+.++|+++|++||+++++|+++++||+|++||++||+++||++|++|+||||||+|||+|+
T Consensus 3 ~~~~~~l~~i~~p~dl~~l~~~~l~~~a~~iR~~ii~~~~~~~GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~ 82 (641)
T PRK12571 3 RPKTPLLDRIKGPADLRALSDAELEQLADELRAEVISAVSETGGHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQCYP 82 (641)
T ss_pred CCCCChhhhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHHHH
Confidence 56678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHH
Q 003948 217 HKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM 296 (784)
Q Consensus 217 ~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAl 296 (784)
|++|+||+++|.+|||.||++|||++.|+++++++.||.|++++.|+|+|+|.++.+++++|||++|||++++|++|||+
T Consensus 83 ~~~l~g~~~~l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal 162 (641)
T PRK12571 83 HKILTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEAL 162 (641)
T ss_pred HHHHhCCHHHHhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhh
Q 003948 297 NNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376 (784)
Q Consensus 297 n~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r 376 (784)
++|+.+++|+++|+|||++ ++ ..+++.++++|+.++.++.|+.+|+..+.+.+.++..+..+..|+++.++
T Consensus 163 ~~a~~~~~~li~I~dnN~~-~i--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (641)
T PRK12571 163 NNAGAADRRLIVILNDNEM-SI--------APPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVT 233 (641)
T ss_pred HHHHHhCCCEEEEEECCCe-ee--------cCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Confidence 9999999999999999996 22 23578899999999999999999999999999998777878889999999
Q ss_pred hccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccccccccccc
Q 003948 377 GLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGK 456 (784)
Q Consensus 377 ~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd~~~g~ 456 (784)
.++.+ ..+|++|||+|+++|||||+++|.++|+++++. .++|++||++|+||+|++++|+++.+|||.++|++++++
T Consensus 234 ~~~~~--~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~-~~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~~f~~~~~~ 310 (641)
T PRK12571 234 GMIGG--GTLFEELGFTYVGPIDGHDMEALLSVLRAARAR-ADGPVLVHVVTEKGRGYAPAEADEDKYHAVGKFDVVTGL 310 (641)
T ss_pred hccch--hhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC-CCCCEEEEEEecCccCcchhhcCCCcccCCCCcCCCCCc
Confidence 88764 478999999999889999999999999999863 478999999999999999999988899999999999887
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCCeeEEE
Q 003948 457 QFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCA 536 (784)
Q Consensus 457 ~~~~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~ 536 (784)
+.+.+....+|+++|+++|.+++++||+|+++++|+.++++++.|+++||+||||+||+||+|+++|+|||+.|++||++
T Consensus 311 ~~~~~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~ 390 (641)
T PRK12571 311 QKKSAPSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA 390 (641)
T ss_pred ccCCCccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEEE
Confidence 54433345689999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCC
Q 003948 537 IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDR 616 (784)
Q Consensus 537 tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~ 616 (784)
+|++|++||+|||++++|++++||+++++++|++|+||+|||+++|+++||+|||++|++|+|+.|++.++++|++..++
T Consensus 391 ~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~ 470 (641)
T PRK12571 391 VYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDG 470 (641)
T ss_pred ehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999875689
Q ss_pred CeEEEcCCCCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHH
Q 003948 617 PSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL 696 (784)
Q Consensus 617 Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~ 696 (784)
|++||++|++.....+|. ..+.+++||+.++++|+|++||++|++++.|++|++.|+++||+++|||+++++|||+++
T Consensus 471 P~~ir~~r~~~~~~~~~~--~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~ 548 (641)
T PRK12571 471 PIAVRFPRGEGVGVEIPA--EGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEAL 548 (641)
T ss_pred cEEEEEecCcCCccccCC--CCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHH
Confidence 999999998654333332 235678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 003948 697 IRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 775 (784)
Q Consensus 697 i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll 775 (784)
+.++++++ +++++||+. .||||++|++++.++++.+.+.+++++|++|.|+++|+.+++++++|+|+++|+++|++++
T Consensus 549 i~sv~k~~-~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~~i~~~l 627 (641)
T PRK12571 549 TDLLVRHH-IVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVTGAL 627 (641)
T ss_pred HHHHhhhC-CEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 98888766 567777765 7999999999999988654457899999999999999999999999999999999999998
Q ss_pred cCCcc
Q 003948 776 GRPKE 780 (784)
Q Consensus 776 ~~~~~ 780 (784)
+..+.
T Consensus 628 ~~~~~ 632 (641)
T PRK12571 628 ARLSG 632 (641)
T ss_pred HhccC
Confidence 65543
No 7
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.1e-116 Score=1022.17 Aligned_cols=577 Identities=37% Similarity=0.632 Sum_probs=525.6
Q ss_pred CccCCCCcccccCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHh
Q 003948 142 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILT 221 (784)
Q Consensus 142 ~l~~i~~p~~~k~~~~~~L~~la~~iR~~ii~~v~~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~ 221 (784)
+|++|+.|.|||+|+.+||++||+|||.++++.+++++||++++||++|++++||++||.|+|+||||+|||+|+|++++
T Consensus 2 ~l~~~~~p~d~~~l~~~~l~~l~~~ir~~~~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~ 81 (581)
T PRK12315 2 YLEKINSPADLKKLSLDELEQLASEIRTALLEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred chhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchHHHHHHc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhh
Q 003948 222 GRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGF 301 (784)
Q Consensus 222 G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~ 301 (784)
||+..+.+.|+.|+++|||++.|++++.++.||+|+++|.|+|||+|+++++++++|||++|||++++|++|||||+|+.
T Consensus 82 G~~~~~~~~~~~g~~~G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~ 161 (581)
T PRK12315 82 GRKEAFLDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAE 161 (581)
T ss_pred CCccchhhHHHcCCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHh
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCC
Q 003948 302 LDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISA 381 (784)
Q Consensus 302 ~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~ 381 (784)
|++|+|+|||||++ ++ ..+++.++.+|.+++.++. .++
T Consensus 162 ~k~~li~Ii~dN~~-si--------~~~~~~~~~~l~~~~~~~~-------------------~~~-------------- 199 (581)
T PRK12315 162 LKSNLIIIVNDNQM-SI--------AENHGGLYKNLKELRDTNG-------------------QSE-------------- 199 (581)
T ss_pred hCCCEEEEEECCCC-cC--------CCCCchhhhhhhhhhhccc-------------------ccH--------------
Confidence 99999999999996 33 2234445444443322210 011
Q ss_pred CchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCcccccccccccccCCC
Q 003948 382 SGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTK 461 (784)
Q Consensus 382 ~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd~~~g~~~~~~ 461 (784)
..+|++|||.+++++||||++++.++++++++ .++|++||++|.||+||++++.++.+||+..+|+..+++..++.
T Consensus 200 --~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~~f~~~~~~~~~~~ 275 (581)
T PRK12315 200 --NNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD--IDHPIVLHIHTLKGKGYQPAEENKEAFHWHMPFDLETGQSKVPA 275 (581)
T ss_pred --HHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEeecCCCCChhhcCHHhcCCCCCCCcccCcccCCC
Confidence 23499999999987799999999999999987 57999999999999999887777789999989998888644332
Q ss_pred CchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhH
Q 003948 462 SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSF 541 (784)
Q Consensus 462 ~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~F 541 (784)
. ..+|+++|+++|.+++++|++++++++|++++++++.|+++||+||||+||+||+|+++|+|||+.|++||+.+|++|
T Consensus 276 ~-~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~F 354 (581)
T PRK12315 276 S-GESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTF 354 (581)
T ss_pred C-CcCHHHHHHHHHHHHhccCCCEEEEeCccccccCcHHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHH
Confidence 2 568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEE
Q 003948 542 LQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621 (784)
Q Consensus 542 l~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~ir 621 (784)
++||+|||++++|++++||+++++++|+++ ||+|||+++|+++||++|||+|++|+|+.|++.++++|++..++|++||
T Consensus 355 l~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir 433 (581)
T PRK12315 355 LQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIR 433 (581)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999999999999999999877 9999999999999999999999999999999999999987557999999
Q ss_pred cCCCCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcC-CCcEEEeeccccCCCcHHHHHHH
Q 003948 622 FPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQL 700 (784)
Q Consensus 622 l~r~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~-GI~v~VId~~slkPlD~e~i~~~ 700 (784)
++|+..+....+ ...++.+|++++++|+|++||++|+++++|++|++.|+++ ||+++|||++|++|||++.+.++
T Consensus 434 ~~r~~~~~~~~~----~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~ 509 (581)
T PRK12315 434 VPEHGVESGPTV----DTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKL 509 (581)
T ss_pred EcCCccCCCCCC----ccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHH
Confidence 999875432111 1234456889999999999999999999999999999998 99999999999999999999999
Q ss_pred hccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 003948 701 ANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 775 (784)
Q Consensus 701 ~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll 775 (784)
.++++.+||+|||. .||||++|++++.+++ .+++++|+||+|+++|+++++++++|||+++|+++|++++
T Consensus 510 ~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 510 KEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFNDRVPVEELYKRNHLTPEQIVEDILSVL 580 (581)
T ss_pred HhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEecCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 88889999999997 6999999999998763 4789999999999999999999999999999999999876
No 8
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.4e-111 Score=983.44 Aligned_cols=577 Identities=59% Similarity=0.960 Sum_probs=522.4
Q ss_pred CCCCCCccCCCCcccccCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHH
Q 003948 137 KPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYV 216 (784)
Q Consensus 137 ~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~ii~~v~~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~ 216 (784)
+|..|+|++|+.|.|||+|+.++|+++|++||+++++|+.+++||+|++||++|++++||++|+.+|||||||+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~y~ 80 (580)
T PRK05444 1 IPKYPLLDTINSPADLKKLSEEELPQLADEIREFLIDVVSKTGGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQAYP 80 (580)
T ss_pred CCCCchhhccCCHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHHHH
Confidence 46779999999999999999999999999999999999988899999999999999999999998999999999999999
Q ss_pred HHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHh-CCCCeEEEEEcCCcccchhhHHH
Q 003948 217 HKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDIL-GKNNNVISVIGDGAMTAGQAYEA 295 (784)
Q Consensus 217 ~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~-g~~~~Vv~viGDGal~eG~~~EA 295 (784)
|++++|++++|.+||+.|+++|||++.+++++.+++|++|+++|.|+|+|+|.+++ +++++|||++|||+++||++|||
T Consensus 81 ~~~~~g~~~~l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Ea 160 (580)
T PRK05444 81 HKILTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEA 160 (580)
T ss_pred HHHHhCcHHHhcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999 58899999999999999999999
Q ss_pred HHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh
Q 003948 296 MNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA 375 (784)
Q Consensus 296 ln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~ 375 (784)
+++|+++++|+++|+|||++ ++ ++++..+.. .+ ...++.
T Consensus 161 l~~A~~~~~nli~IvdnN~~-~i-----~~~~~~~~~---~~-------------------------~~~~~~------- 199 (580)
T PRK05444 161 LNNAGDLKSDLIVILNDNEM-SI-----SPNVGALSN---YL-------------------------ARLRSS------- 199 (580)
T ss_pred HHHHHhhCCCEEEEEECCCC-cC-----CCcchhhhh---hh-------------------------ccccHH-------
Confidence 99999999999999999996 22 122110000 00 001122
Q ss_pred hhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCcccccccccc
Q 003948 376 RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTG 455 (784)
Q Consensus 376 r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd~~~g 455 (784)
.+|++|||+++.++||||++++.++++++++ .++|++|+++|.||+||+++|+++.+||+.++|+...+
T Consensus 200 ---------~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~~ 268 (580)
T PRK05444 200 ---------TLFEELGFNYIGPIDGHDLDALIETLKNAKD--LKGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPETG 268 (580)
T ss_pred ---------HHHHHcCCCeeeeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEecCCcCCChhhcCccccCCCCCCCcccC
Confidence 3499999999877899999999999999987 47999999999999999999877778999999987766
Q ss_pred cccCCC-CchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCCeeE
Q 003948 456 KQFKTK-SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPF 534 (784)
Q Consensus 456 ~~~~~~-~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~ 534 (784)
+..+++ ....+|+++|+++|.+++++||+++++++|+.+++++..|+++||+||||+||+||+|+++|+|||+.|++||
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p~ 348 (580)
T PRK05444 269 EQPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPV 348 (580)
T ss_pred CccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCeeE
Confidence 543321 1236899999999999999999999999999888889889999999999999999999999999999999999
Q ss_pred EEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhC
Q 003948 535 CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVID 614 (784)
Q Consensus 535 ~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~ 614 (784)
+++|++|++|++|||++++|++++||+++++++|++|.||+|||+++|+++||++||++|++|+|++|++.++++|++..
T Consensus 349 ~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~ 428 (580)
T PRK05444 349 VAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYD 428 (580)
T ss_pred EEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999766
Q ss_pred CCCeEEEcCCCCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcH
Q 003948 615 DRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDT 694 (784)
Q Consensus 615 ~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~ 694 (784)
++|+|||++|+..+....+ +.+.+++||++++++|+|++||++|++++.|++|++.|+ +++|||++|++|||+
T Consensus 429 ~~P~~ir~~r~~~~~~~~~---~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D~ 501 (580)
T PRK05444 429 DGPIAIRYPRGNGVGVELP---ELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLDE 501 (580)
T ss_pred CCcEEEEecCCCCCCCCCC---CcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccCH
Confidence 8999999999875432222 146788999999999999999999999999999999996 899999999999999
Q ss_pred HHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 003948 695 DLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 773 (784)
Q Consensus 695 e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ 773 (784)
+++.+++++++++||+||+. .||||++|++++.++++ +.+++++|++|.|+++|+++++++++|||+++|+++|++
T Consensus 502 ~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 578 (580)
T PRK05444 502 ELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHGSREELLAELGLDAEGIARRILE 578 (580)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 99999999999999999998 49999999999998865 358999999999999999999999999999999999987
Q ss_pred Hh
Q 003948 774 LL 775 (784)
Q Consensus 774 ll 775 (784)
++
T Consensus 579 ~~ 580 (580)
T PRK05444 579 LL 580 (580)
T ss_pred hC
Confidence 63
No 9
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-101 Score=850.16 Aligned_cols=605 Identities=33% Similarity=0.464 Sum_probs=510.8
Q ss_pred CCCccCCCCcccccCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcHHHHHHHHhh-ccC----CC----CcEEEeCC
Q 003948 140 TPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHR-VFN----TP----DDKIIWDV 210 (784)
Q Consensus 140 ~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~ii~~v~~~gGH~gsslg~~el~vaL~~-~~~----~p----~D~~i~s~ 210 (784)
||.++++++|..++||.+.+++.++++ ++||+++++|.+++...||. +++ +| +||||||+
T Consensus 2 ~~~~~~~~~~~~~n~lri~si~~~~~a-----------~sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~ 70 (632)
T KOG0523|consen 2 TPSQDSQILKDAVNNLRILSIDATSAA-----------KSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSN 70 (632)
T ss_pred CchhhhhhhHHHhhhhhhhhHHHHHhh-----------hcCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEec
Confidence 566777777766666666555544443 56999999999999999975 332 23 79999999
Q ss_pred CchH---HHHHHHhC--chHHhHHHHhcCC-CCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCC-CCeEEEEEc
Q 003948 211 GHQA---YVHKILTG--RRSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK-NNNVISVIG 283 (784)
Q Consensus 211 GH~~---y~~~~l~G--~~~~l~~~r~~gg-l~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~-~~~Vv~viG 283 (784)
||+| |+|++|+| +.++|.+|||.+| .+|||.+ |++++.+++||+|++||+|+|||++++++++ +++|||++|
T Consensus 71 GHa~~llYa~~~l~G~~~~edl~~~Rq~~s~t~ghp~~-~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlG 149 (632)
T KOG0523|consen 71 GHACPLLYAHWHLAGYDREEDLKNFRQIGSDTPGHPEP-ELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLG 149 (632)
T ss_pred cccchHHHHHHHHhccCcHHHHHHHHhhCCCCCCCCcc-cCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEc
Confidence 9999 99999999 6899999999998 5789885 7999999999999999999999999999999 999999999
Q ss_pred CCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCc
Q 003948 284 DGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQ 363 (784)
Q Consensus 284 DGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~ 363 (784)
|||++||++||||++|++++++.+++++||+++++++.+..|...+|.+++-...++++. .+.|+.
T Consensus 150 DG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~--------------~V~~~d 215 (632)
T KOG0523|consen 150 DGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVI--------------IVDGGD 215 (632)
T ss_pred CchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEE--------------EEcCcC
Confidence 999999999999999999996666666666667888888888888887764444444433 233333
Q ss_pred hHHHHHHHHH--HhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhc-
Q 003948 364 THEVAAKVDE--YARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAA- 440 (784)
Q Consensus 364 ~~~~~~k~~~--~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~- 440 (784)
.+.+.+.+.+ +.+++...-..+.|+++|..+++++++|..+.....++++++..+- |+++++.+.|+++||..+..
T Consensus 216 ~d~i~ka~~~a~~~k~kpt~i~~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~~~-P~~~~~v~~~~~~~p~~~~~~ 294 (632)
T KOG0523|consen 216 VDEIRKAIGKAKSVKGKPTAIKATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIKGL-PVLIFVVPEKVKLYPEKPVED 294 (632)
T ss_pred HHHHHHHHhhhhhccCCceeeeeeeeeecCccccccccccCCcchhhHHHHHHhhcCC-cceeEEeccccccCCCccccc
Confidence 4444443332 4577766667788999999999999999999888888888876444 99999999999999876544
Q ss_pred -ccccCcccccccccccccCCCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHH
Q 003948 441 -ADRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHA 519 (784)
Q Consensus 441 -~~~~Hg~~~fd~~~g~~~~~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~ 519 (784)
....|.++++++++..+.+...+..+++++|.++|.++++.+|+|+++++|+.+|+.++-|+++||+|||++||+||+|
T Consensus 295 ~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~m 374 (632)
T KOG0523|consen 295 ARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQNM 374 (632)
T ss_pred ccccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhhh
Confidence 3567889999999998888888889999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHHhcCC-eeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEec
Q 003948 520 VTFAAGLASEGV-KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAP 597 (784)
Q Consensus 520 vg~AaGlA~~G~-~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~P 597 (784)
+++|+|+|+.|. +|||.||+.|++||+||++ +.++.+.++++++.|.|+ +|+||||||++||+++||++||++||+|
T Consensus 375 v~ia~G~a~~g~~~Pf~~tf~~F~trA~dqvr-~~a~s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~P 453 (632)
T KOG0523|consen 375 VGIANGIACRGRTIPFCGTFAAFFTRAFDQVR-MGALSQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRP 453 (632)
T ss_pred HHhhhchhcCCCccchhHHHHHHHHHhhhhee-ehhhccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEec
Confidence 999999999997 9999999999999999985 567777788888877665 8999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEcCCCCCccccCCCCCCCCCcccccee-EeeeCC-cEEEEEechhHHHHHHHHHHHh
Q 003948 598 SDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGR-ILMEGD-RVAILGYGSIVQQCVLAANMLK 675 (784)
Q Consensus 598 sd~~E~~~~l~~A~~~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~-vlreG~-dvtIva~Gs~v~~aleAae~L~ 675 (784)
+|.+|+..++..|++..+.|++++++|++.+.... ...+++||++ +++++. ||+||++|++|++|++||+.|+
T Consensus 454 aD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~-----~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~ 528 (632)
T KOG0523|consen 454 ADGNETENAVATAANTKGTPSIRTLSRQNLPIYNN-----TEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLS 528 (632)
T ss_pred CchHHHHHHHHHHHhcCCCeeEEEecCccccccCC-----CchhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHH
Confidence 99999999999999988889999999998654332 2357799985 888887 9999999999999999999999
Q ss_pred cCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEE-cCCCc-CCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCH
Q 003948 676 SQDISVTVADARFCKPLDTDLIRQLANEHEILITV-EEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 753 (784)
Q Consensus 676 ~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvv-Ee~~~-gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~ 753 (784)
++||+++|+|+++|||||..+|+++.+.++..++| |++.. ||++..+ +..-+.++. ..+..++ +|+|+.+|++
T Consensus 529 ~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~---~a~~g~~~~-~~~~~~~-~~~~~~sG~p 603 (632)
T KOG0523|consen 529 EDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAV---TAAWGKYPG-ILVPSLG-VDTFGRSGPP 603 (632)
T ss_pred hcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhhee---eehhcccCC-ccceeec-cccCCcCCCC
Confidence 99999999999999999999999999988755555 55553 4555443 333333322 2234455 6999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhcCCcccc
Q 003948 754 ADQLEESGLSSRHISATVLSLLGRPKEAL 782 (784)
Q Consensus 754 ~elle~~gl~~~~I~~~i~~ll~~~~~~~ 782 (784)
.++++.|||++++|++++++++++.|++|
T Consensus 604 ~ell~~fGit~~~Ia~~a~~~~~~~~~~~ 632 (632)
T KOG0523|consen 604 PELLKMFGITARHIAAAALSLIGKYREAL 632 (632)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999888865
No 10
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=4.6e-96 Score=863.50 Aligned_cols=540 Identities=23% Similarity=0.340 Sum_probs=457.8
Q ss_pred HHHHHHHHHHHHHHHHhh-ccCCCCCCCCcHHHHHHHHhh-c--cCC------CCcEEEeCCCchH---HHHHHHhCch-
Q 003948 159 DLEQLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHR-V--FNT------PDDKIIWDVGHQA---YVHKILTGRR- 224 (784)
Q Consensus 159 ~L~~la~~iR~~ii~~v~-~~gGH~gsslg~~el~vaL~~-~--~~~------p~D~~i~s~GH~~---y~~~~l~G~~- 224 (784)
.++++|++||.++++|++ .++||+|++||++|++++||+ + |+. +|||||||+||++ |+|++++|++
T Consensus 5 ~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~ 84 (661)
T PTZ00089 5 IDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDL 84 (661)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCC
Confidence 357789999999999996 589999999999999999996 5 432 4899999999999 9999999983
Q ss_pred --HHhHHHHhcCC-CCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCC----------CCeEEEEEcCCcccchh
Q 003948 225 --SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTAGQ 291 (784)
Q Consensus 225 --~~l~~~r~~gg-l~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~----------~~~Vv~viGDGal~eG~ 291 (784)
++|.+||+.++ ++|||++.+++++.+++||+|+++|.|+|||+|+|+++. +++|||++|||+++||+
T Consensus 85 ~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~ 164 (661)
T PTZ00089 85 SMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGV 164 (661)
T ss_pred CHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHH
Confidence 78999999988 589999989999999999999999999999999999864 78999999999999999
Q ss_pred hHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHH
Q 003948 292 AYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (784)
Q Consensus 292 ~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k 370 (784)
+|||+|+|+.++ .|||+|+|||++ ++ ++++... ..+++..+
T Consensus 165 ~~EAl~~A~~~~L~nLi~i~d~N~~-~i-----~~~~~~~--------------------------------~~~~~~~~ 206 (661)
T PTZ00089 165 SQEALSLAGHLGLEKLIVLYDDNKI-TI-----DGNTDLS--------------------------------FTEDVEKK 206 (661)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCc-cc-----ccCcccc--------------------------------cCccHHHH
Confidence 999999999999 579999999996 33 2222100 01233444
Q ss_pred HHHHhhhccCCCchhhhhhcCCeEEeecCCC-CHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc-
Q 003948 371 VDEYARGLISASGSTFFEELGLYYIGPVDGH-NVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV- 448 (784)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~i~~vDGh-d~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~- 448 (784)
|++|||+++.++||| |+++|.++++++++. .++|++||++|.||+|+ .+| +..+||+.+
T Consensus 207 ----------------f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~-~~~P~~I~~~T~kG~G~-~~e-~~~~~H~~~~ 267 (661)
T PTZ00089 207 ----------------YEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS-KGKPKLIIVKTTIGYGS-SKA-GTEKVHGAPL 267 (661)
T ss_pred ----------------HHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc-CCCcEEEEEEeeecCCC-CcC-CCCCccCCCC
Confidence 999999999766999 999999999999863 36899999999999994 444 456899875
Q ss_pred ------------------ccccc--cc----------cc------------------------------c----------
Q 003948 449 ------------------KFDPK--TG----------KQ------------------------------F---------- 458 (784)
Q Consensus 449 ------------------~fd~~--~g----------~~------------------------------~---------- 458 (784)
+|++. .. +. +
T Consensus 268 ~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (661)
T PTZ00089 268 GDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLPK 347 (661)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccCCchhhhhhhhh
Confidence 25542 00 00 0
Q ss_pred -CCCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh-----hhhHHhCC-CCeeeccccHHHHHHHHHHHHh-cC
Q 003948 459 -KTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKRFP-DRCFDVGIAEQHAVTFAAGLAS-EG 530 (784)
Q Consensus 459 -~~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl-----~~f~~~~p-~R~~d~GIaE~~~vg~AaGlA~-~G 530 (784)
..+.+..+++++++++|.++++.+|+++..++|+..++.+ ..|+++|| +||||+|||||+|+++|+|||+ .|
T Consensus 348 ~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G 427 (661)
T PTZ00089 348 YTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHGG 427 (661)
T ss_pred hcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccCCCCCeeeeeecHHHHHHHHHHHHHcCC
Confidence 0011234678889999999999999999999999888754 37999999 8999999999999999999999 78
Q ss_pred CeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHH
Q 003948 531 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (784)
Q Consensus 531 ~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~ 609 (784)
++||++||++|++|++||| +++|++++||++++++.|+ +|+||+|||+++|+++||+||||+|++|+|++|+..++++
T Consensus 428 ~~P~~~tf~~Fl~Ra~dqi-r~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~~ 506 (661)
T PTZ00089 428 FIPFGATFLNFYGYALGAV-RLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAYAL 506 (661)
T ss_pred CeEEEEehHHHHHHHHHHH-HHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHHH
Confidence 9999999999999999996 6779999999999988776 7999999999999999999999999999999999999999
Q ss_pred HHHhCCCCeEEEcCCCCCccccCCCCCCCCCccccceeEeeeC---CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeec
Q 003948 610 AAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEG---DRVAILGYGSIVQQCVLAANMLKSQDISVTVADA 686 (784)
Q Consensus 610 A~~~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG---~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~ 686 (784)
|+...++|+|||++|++.+.. +. ....+..+++++++++ .|++||++|+++.+|++|++.|++ ||+++|||+
T Consensus 507 al~~~~gP~~irl~R~~~~~~--~~--~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~~ 581 (661)
T PTZ00089 507 ALANAKTPTILCLSRQNTPPL--PG--SSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNVRVVSM 581 (661)
T ss_pred HHHcCCCCEEEEecCCCCCCc--CC--CccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc-CCCeEEEeC
Confidence 997678999999999975432 21 1223445667899975 799999999999999999999999 999999999
Q ss_pred cccCCCcHHHHHHH---hc-cCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCC
Q 003948 687 RFCKPLDTDLIRQL---AN-EHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL 762 (784)
Q Consensus 687 ~slkPlD~e~i~~~---~~-~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl 762 (784)
+|++|||.+.+... +. ++..+|++|++...||.. . ..+++|++| |+.+|+.+++++++||
T Consensus 582 ~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g~~~----------~-----~~~~igv~~-Fg~sg~~~~l~~~~Gl 645 (661)
T PTZ00089 582 PCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFGWEK----------Y-----SHVHVGISG-FGASAPANALYKHFGF 645 (661)
T ss_pred CCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHHHHh----------c-----CCeEEECCC-ccccCCHHHHHHHhCC
Confidence 99999999976533 44 455799999998655431 0 114789988 9999999999999999
Q ss_pred CHHHHHHHHHHHhcC
Q 003948 763 SSRHISATVLSLLGR 777 (784)
Q Consensus 763 ~~~~I~~~i~~ll~~ 777 (784)
|++.|+++|++++.+
T Consensus 646 ~~e~I~~~i~~~l~~ 660 (661)
T PTZ00089 646 TVENVVEKARALAAR 660 (661)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999998753
No 11
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=2e-95 Score=856.63 Aligned_cols=542 Identities=21% Similarity=0.296 Sum_probs=455.1
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCCCCCCcHHHHHHHHhhcc-C----C----CCcEEEeCCCchH---HHHHHHhCch---
Q 003948 161 EQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHRVF-N----T----PDDKIIWDVGHQA---YVHKILTGRR--- 224 (784)
Q Consensus 161 ~~la~~iR~~ii~~v~~-~gGH~gsslg~~el~vaL~~~~-~----~----p~D~~i~s~GH~~---y~~~~l~G~~--- 224 (784)
+++|.+||.++++|+++ ++||+|++||++|++++||+.+ + + +|||||||+||++ |++++++|+.
T Consensus 5 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12753 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPI 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCCCCH
Confidence 56799999999999985 8999999999999999999643 2 2 2799999999999 9999999973
Q ss_pred HHhHHHHhcCC-CCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCC----------CCeEEEEEcCCcccchhhH
Q 003948 225 SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTAGQAY 293 (784)
Q Consensus 225 ~~l~~~r~~gg-l~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~----------~~~Vv~viGDGal~eG~~~ 293 (784)
++|.+|||.|+ ++|||+...+++..+++|++|+++|.|+|||+|.|+++. +++|||++|||+++||++|
T Consensus 85 e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12753 85 EELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHH
Confidence 88999999998 699999877899999999999999999999999999863 6899999999999999999
Q ss_pred HHHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHH
Q 003948 294 EAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD 372 (784)
Q Consensus 294 EAln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~ 372 (784)
||+|+|+.+++ ||++|+|||++ ++ +|++..+ + .+++..+
T Consensus 165 EA~~~A~~~kL~nLi~ivd~N~~-~i-----~~~~~~~--~------------------------------~~~~~~~-- 204 (663)
T PRK12753 165 EVCSLAGTLGLGKLIGFYDHNGI-SI-----DGETEGW--F------------------------------TDDTAKR-- 204 (663)
T ss_pred HHHHHHHHHCCCCEEEEEECCCC-cC-----CCChhhh--c------------------------------ChhHHHH--
Confidence 99999999996 69999999995 33 3332210 0 1344444
Q ss_pred HHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc----
Q 003948 373 EYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV---- 448 (784)
Q Consensus 373 ~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~---- 448 (784)
|++|||+++.+|||||+++|.++++++++. .++|++|+++|+||+|++++|+. .+|||.+
T Consensus 205 --------------f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~-~~~P~~I~~~T~kG~G~~~~e~~-~~~H~~~l~~~ 268 (663)
T PRK12753 205 --------------FEAYHWHVIHEIDGHDPQAIKEAILEAQSV-KDKPSLIICRTIIGFGSPNKAGK-EESHGAPLGEE 268 (663)
T ss_pred --------------HHHcCCeEEceeCCCCHHHHHHHHHHHHHC-CCCeEEEEEEEeecCCCCcccCC-CCccCCCCCHH
Confidence 999999998668999999999999998863 47999999999999999998765 5789842
Q ss_pred --------------cccc-----------ccccc------------------------------cC--------------
Q 003948 449 --------------KFDP-----------KTGKQ------------------------------FK-------------- 459 (784)
Q Consensus 449 --------------~fd~-----------~~g~~------------------------------~~-------------- 459 (784)
+|+. ++++. ++
T Consensus 269 ~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (663)
T PRK12753 269 EVALTRQKLGWHHPPFEIPKEIYAAWDAREKGEKAEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINEL 348 (663)
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Confidence 3444 11210 00
Q ss_pred -CCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh-----hhhHHhCCCCeeeccccHHHHHHHHHHHHh-cCCe
Q 003948 460 -TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKRFPDRCFDVGIAEQHAVTFAAGLAS-EGVK 532 (784)
Q Consensus 460 -~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl-----~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~-~G~~ 532 (784)
.+.+...++++++++|.++++.+|+++++++|+.+++.+ ..|+++||+||||+||+||+|+++|+|||+ .|++
T Consensus 349 ~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G~~ 428 (663)
T PRK12753 349 QANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFV 428 (663)
T ss_pred hccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCCCe
Confidence 011234567789999999999999999999999988866 789999999999999999999999999999 7899
Q ss_pred eEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHH
Q 003948 533 PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (784)
Q Consensus 533 P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~ 611 (784)
||++||++|++|++|||+. .|++++||++++++.|+ +|+||+|||+++|+++||.||||+|++|+|++|+..+++.|+
T Consensus 429 P~~~tf~~F~~r~~~qir~-~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~al 507 (663)
T PRK12753 429 PYTATFLMFVEYARNAARM-AALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKLAI 507 (663)
T ss_pred EEEEehHHHHHHHHHHHHH-HHhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHHHH
Confidence 9999999999999999975 69999999999999988 799999999999999999999999999999999999999999
Q ss_pred HhCCCCeEEEcCCCCCccccCCCCCC-CCCccccceeEeeeCC---cEEEEEechhHHHHHHHHHHHhcCCCcEEEeecc
Q 003948 612 VIDDRPSCFRFPRGNGIGAVLPPNNK-GTPLEIGKGRILMEGD---RVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687 (784)
Q Consensus 612 ~~~~~Pv~irl~r~~~~~~~~p~~~~-~~~~~igk~~vlreG~---dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~ 687 (784)
+..++|+|||++|++.+... .... ...+..|+ ++++++. |++||++|++|++|++|++.|+++||+++|||++
T Consensus 508 ~~~~gP~~irl~R~~~~~~~--~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~~~ 584 (663)
T PRK12753 508 ERHNGPTALILSRQNLAQQE--RTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVSMP 584 (663)
T ss_pred hcCCCCEEEEecCCCCCCCC--CcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 76689999999998754321 1100 12344444 8899864 9999999999999999999999999999999999
Q ss_pred ccCCCcHHHH--HH-Hhcc-CCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCC
Q 003948 688 FCKPLDTDLI--RQ-LANE-HEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLS 763 (784)
Q Consensus 688 slkPlD~e~i--~~-~~~~-~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~ 763 (784)
|++|||++.+ ++ .+.. ....|++|++...+|. .+. +.+.+++|+ |+|+.+|+++++++++|||
T Consensus 585 ~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~~~~~----~~~--------~~~~~~iGv-d~Fg~sg~~~~l~~~~Glt 651 (663)
T PRK12753 585 STDIFDAQDEAYRESVLPSNVTARVAVEAGIADYWY----KYV--------GLKGAIIGM-TGFGESAPADKLFPFFGFT 651 (663)
T ss_pred cCCccchhHHHHHHhhcccccceEEEEccChHHHHH----HHc--------CCCCeEEEe-CCCcCcCCHHHHHHHhCCC
Confidence 9999999876 22 2222 2245999998432222 221 235678998 8999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 003948 764 SRHISATVLSLL 775 (784)
Q Consensus 764 ~~~I~~~i~~ll 775 (784)
++.|++++++++
T Consensus 652 ~~~Iv~~i~~~~ 663 (663)
T PRK12753 652 VENIVAKAKKLL 663 (663)
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
No 12
>PLN02790 transketolase
Probab=100.00 E-value=4.5e-95 Score=854.23 Aligned_cols=535 Identities=22% Similarity=0.345 Sum_probs=454.4
Q ss_pred HHHHHHHHhh-ccCCCCCCCCcHHHHHHHHhhc---cCC------CCcEEEeCCCchH---HHHHHHhCch----HHhHH
Q 003948 167 LRADIVNSVS-KTGGHLSANLGVVELTLALHRV---FNT------PDDKIIWDVGHQA---YVHKILTGRR----SRMNT 229 (784)
Q Consensus 167 iR~~ii~~v~-~~gGH~gsslg~~el~vaL~~~---~~~------p~D~~i~s~GH~~---y~~~~l~G~~----~~l~~ 229 (784)
||.++++|++ +++||+|++||++|++++||+. |+. +|||||||+||++ |+|++++|+. ++|++
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 6999999996 5899999999999999999975 442 4899999999999 9999999985 78999
Q ss_pred HHhcCCC-CCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHh-----CC-----CCeEEEEEcCCcccchhhHHHHHH
Q 003948 230 MRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDIL-----GK-----NNNVISVIGDGAMTAGQAYEAMNN 298 (784)
Q Consensus 230 ~r~~ggl-~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~-----g~-----~~~Vv~viGDGal~eG~~~EAln~ 298 (784)
|||.|++ +|||++.++|++.+++||+|+++|.|+|||+|.|++ ++ +++|||++|||+++||++|||+|+
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 9999985 699999899999999999999999999999999964 32 689999999999999999999999
Q ss_pred HhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhh
Q 003948 299 AGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARG 377 (784)
Q Consensus 299 A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~ 377 (784)
|+.+++ ||++|+|||++ ++ ++++.. . ..+++..+
T Consensus 161 A~~~~L~nli~i~d~N~~-~i-----~~~~~~---~-----------------------------~~~~~~~~------- 195 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHI-SI-----DGDTEI---A-----------------------------FTEDVDKR------- 195 (654)
T ss_pred HHHhCCCCEEEEEecCCc-cc-----cCCccc---c-----------------------------cchhHHHH-------
Confidence 999995 69999999996 33 222210 0 01344444
Q ss_pred ccCCCchhhhhhcCCeEEeecCC-CCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc--------
Q 003948 378 LISASGSTFFEELGLYYIGPVDG-HNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV-------- 448 (784)
Q Consensus 378 ~~~~~~~~lfea~G~~~i~~vDG-hd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~-------- 448 (784)
|++|||+++.+.|| ||+++|.+|++++++. .++|++||++|.||+|++++|+ ..+||+.+
T Consensus 196 ---------f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~-~~~P~lI~~~T~kG~G~~~~e~-~~~~H~~~~~~~~~~~ 264 (654)
T PLN02790 196 ---------YEALGWHTIWVKNGNTDYDEIRAAIKEAKAV-TDKPTLIKVTTTIGYGSPNKAN-SYSVHGAALGEKEVDA 264 (654)
T ss_pred ---------HHHcCCeEEEECCCCCCHHHHHHHHHHHHhc-CCCeEEEEEEEeecCCCccccC-CCCcCCCCCCHHHHHH
Confidence 99999999854444 8999999999999863 4799999999999999998665 46899876
Q ss_pred ----------cccccccc-c-----------c------------C-----------------------------CCCchh
Q 003948 449 ----------KFDPKTGK-Q-----------F------------K-----------------------------TKSPTL 465 (784)
Q Consensus 449 ----------~fd~~~g~-~-----------~------------~-----------------------------~~~~~~ 465 (784)
+|+..++. . . . .+.+..
T Consensus 265 ~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (654)
T PLN02790 265 TRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPAD 344 (654)
T ss_pred HHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCchhhhhhhhhhcccCcch
Confidence 56544210 0 0 0 011124
Q ss_pred hHHHHHHHHHHHHHhhCCCEEEEecCCCCCCC-----hhhhHHh-CCCCeeeccccHHHHHHHHHHHHhc--CCeeEEEe
Q 003948 466 TYTQYFAESLIKEAETDDKIVAIHAAMGGGTG-----LNYFQKR-FPDRCFDVGIAEQHAVTFAAGLASE--GVKPFCAI 537 (784)
Q Consensus 466 s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~g-----l~~f~~~-~p~R~~d~GIaE~~~vg~AaGlA~~--G~~P~~~t 537 (784)
++++++++.|.++++.+|++++.++|+.+++. ++.|+++ ||+||||+||+||+|+++|+|||++ |++||++|
T Consensus 345 a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~t 424 (654)
T PLN02790 345 ATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCAT 424 (654)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEEe
Confidence 67788889999999999999999999988764 6789998 5999999999999999999999996 59999999
Q ss_pred cHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCC
Q 003948 538 YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDR 616 (784)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~ 616 (784)
|+.|+.|+++|+ +++|++++||++++++.|+ +|+||+|||+++|+++||+||||+|++|+|++|+..++++|+...++
T Consensus 425 f~~F~~~~~~~i-r~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~~~g 503 (654)
T PLN02790 425 FFVFTDYMRAAM-RLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVTNRKR 503 (654)
T ss_pred cHHHHHHHHHHH-HHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHcCCC
Confidence 999999999998 6779999999999988776 79999999999999999999999999999999999999999886789
Q ss_pred CeEEEcCCCCCccccCCCCCCCCCccccceeEeeeC-----CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCC
Q 003948 617 PSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEG-----DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKP 691 (784)
Q Consensus 617 Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG-----~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkP 691 (784)
|++||++|++.+.. +.. ....++.|+ ++++++ .|++||++|+++++|++|++.|+++||+++|||++|++|
T Consensus 504 P~~irl~R~~~~~~--~~~-~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikp 579 (654)
T PLN02790 504 PTVLALSRQKVPNL--PGT-SIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWEL 579 (654)
T ss_pred CEEEEecCCCCCCC--CCC-cccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccch
Confidence 99999999875432 111 124566776 777774 799999999999999999999999999999999999999
Q ss_pred CcHHHHH---HHh-ccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHH
Q 003948 692 LDTDLIR---QLA-NEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 767 (784)
Q Consensus 692 lD~e~i~---~~~-~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I 767 (784)
||++... +.+ ++++.+|++|+++.+||++ ++. .+.+++|+ |+|+.+|+.+++++++|||+++|
T Consensus 580 ld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~----~~~--------~~~~~igv-d~Fg~sg~~~~l~~~~Glt~e~I 646 (654)
T PLN02790 580 FEEQSDEYKESVLPSSVTARVSVEAGSTFGWEK----YVG--------SKGKVIGV-DRFGASAPAGILYKEFGFTVENV 646 (654)
T ss_pred hhhhHHHHHHhhhccccceEEEecCccchhHHH----hcC--------CCceEEEe-CCCcCcCCHHHHHHHhCCCHHHH
Confidence 9998743 666 6677899999998888864 221 23467898 99999999999999999999999
Q ss_pred HHHHHHHh
Q 003948 768 SATVLSLL 775 (784)
Q Consensus 768 ~~~i~~ll 775 (784)
+++|++++
T Consensus 647 ~~~i~~~~ 654 (654)
T PLN02790 647 VAAAKSLL 654 (654)
T ss_pred HHHHHHhC
Confidence 99998764
No 13
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=1.1e-92 Score=834.57 Aligned_cols=546 Identities=24% Similarity=0.367 Sum_probs=466.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCcHHHHHHHHhh-ccC----C----CCcEEEeCCCchH---HHHHHHh
Q 003948 155 LSTEDLEQLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHR-VFN----T----PDDKIIWDVGHQA---YVHKILT 221 (784)
Q Consensus 155 ~~~~~L~~la~~iR~~ii~~v~-~~gGH~gsslg~~el~vaL~~-~~~----~----p~D~~i~s~GH~~---y~~~~l~ 221 (784)
|.+++|+++|+++|+++++|+. +++||+|++||++|++++||+ +|+ + ++||||||+||++ |++++++
T Consensus 3 ~~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~~ 82 (624)
T PRK05899 3 MDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHLA 82 (624)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHHc
Confidence 5688999999999999999996 589999999999999999996 543 2 3899999999999 9999999
Q ss_pred Cc---hHHhHHHHhcCC-CCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCC----------CCeEEEEEcCCcc
Q 003948 222 GR---RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAM 287 (784)
Q Consensus 222 G~---~~~l~~~r~~gg-l~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~----------~~~Vv~viGDGal 287 (784)
|+ ++++.+||++++ ++|||++.+++++.+++|++|+++|+|+|+|+|.+++++ +++|||++|||++
T Consensus 83 G~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~ 162 (624)
T PRK05899 83 GYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDL 162 (624)
T ss_pred CCCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchh
Confidence 99 899999999998 699999888899999999999999999999999998887 8999999999999
Q ss_pred cchhhHHHHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHH
Q 003948 288 TAGQAYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHE 366 (784)
Q Consensus 288 ~eG~~~EAln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~ 366 (784)
++|++||||++|+.+++ |+++|+|||++ ++. ++... . ...+
T Consensus 163 ~~g~~~Eal~~A~~~~L~~li~v~dnN~~-~~~-----~~~~~---~-----------------------------~~~~ 204 (624)
T PRK05899 163 MEGISHEACSLAGHLKLGNLIVIYDDNRI-SID-----GPTEG---W-----------------------------FTED 204 (624)
T ss_pred hchHHHHHHHHHHHhCCCCEEEEEECCCC-ccc-----ccccc---c-----------------------------cccc
Confidence 99999999999999995 59999999996 221 11110 0 0023
Q ss_pred HHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCc
Q 003948 367 VAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHG 446 (784)
Q Consensus 367 ~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg 446 (784)
+.. +|++|||+++ .|||||+++|.++++++++ .++|++|+++|.||+|++++|+ ..+||+
T Consensus 205 ~~~----------------~~~a~G~~~~-~VdG~d~~~l~~al~~a~~--~~~P~vI~v~t~kg~g~~~~e~-~~~~H~ 264 (624)
T PRK05899 205 VKK----------------RFEAYGWHVI-EVDGHDVEAIDAAIEEAKA--STKPTLIIAKTIIGKGAPNKEG-THKVHG 264 (624)
T ss_pred HHH----------------HhccCCCeEE-EECCCCHHHHHHHHHHHHh--cCCCEEEEEEeEeccCCccccC-CCcccC
Confidence 333 4999999988 5999999999999999986 4689999999999999999885 467998
Q ss_pred ccccccc--cc--------cccC---------------CCC-----------chhhHHHHHHHHHHHHHhhCCCEEEEec
Q 003948 447 VVKFDPK--TG--------KQFK---------------TKS-----------PTLTYTQYFAESLIKEAETDDKIVAIHA 490 (784)
Q Consensus 447 ~~~fd~~--~g--------~~~~---------------~~~-----------~~~s~~~af~~aL~~l~~~d~~iv~i~a 490 (784)
.++.+.+ .. +.+. ... ...+++++|+++|.+++++||+++++++
T Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~~~~v~vl~~ 344 (624)
T PRK05899 265 APLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAGEKVATRKASGKALNALAKALPELVGGSA 344 (624)
T ss_pred CCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 6542211 00 0000 000 1234589999999999999999999999
Q ss_pred CCCCCCChhhhH------HhCCCCeeeccccHHHHHHHHHHHHhcC-CeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEE
Q 003948 491 AMGGGTGLNYFQ------KRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFA 563 (784)
Q Consensus 491 D~ggs~gl~~f~------~~~p~R~~d~GIaE~~~vg~AaGlA~~G-~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v 563 (784)
|+++++++..|. ++||+||||+||+||+|+++|+|||+.| ++||+++|++|++|++||+++ .+++++||+++
T Consensus 345 D~~~~~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~-~~~~~~pv~~v 423 (624)
T PRK05899 345 DLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRL-AALMKLPVIYV 423 (624)
T ss_pred CCccccCcccccccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHH-HHhcCCCEEEE
Confidence 999888887776 6899999999999999999999999999 999999999999999999976 59999999999
Q ss_pred eeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEcCCCCCccccCCCCCCCCCcc
Q 003948 564 MDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLE 642 (784)
Q Consensus 564 ~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~ 642 (784)
++++|+ .|.+|+|||+++|+++||++|||+|++|+|++|++.++++|++..++|+|||++|+..+.. .+....+.++
T Consensus 424 ~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~--~~~~~~~~~~ 501 (624)
T PRK05899 424 FTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVL--ERTAQEEGVA 501 (624)
T ss_pred EECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCc--CCcccccccc
Confidence 999998 6889999999999999999999999999999999999999998558999999999764321 1100124577
Q ss_pred ccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHH---HHHHHh-ccCCeEEEEcCCCcCCc
Q 003948 643 IGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTD---LIRQLA-NEHEILITVEEGSVGGF 718 (784)
Q Consensus 643 igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e---~i~~~~-~~~~~vVvvEe~~~gG~ 718 (784)
.|+ +++++|.|++||++|+++++|++|++.|+++||+++|||++|++|||++ .+...+ +.+..+|++|++..+||
T Consensus 502 ~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~ 580 (624)
T PRK05899 502 KGG-YVLRDDPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGW 580 (624)
T ss_pred CCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccch
Confidence 786 8899999999999999999999999999999999999999999999998 355555 44567888888777777
Q ss_pred HHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 003948 719 GSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 775 (784)
Q Consensus 719 gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll 775 (784)
. .++ +.+++++|++| |+.+|+++++++++|||+++|+++|++++
T Consensus 581 ~----~~~--------~~~~~~iGv~~-f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 581 Y----KYV--------GLDGKVLGIDT-FGASAPADELFKEFGFTVENIVAAAKELL 624 (624)
T ss_pred h----hhc--------CCCceEEECCC-CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 2 332 23668999999 99999999999999999999999998764
No 14
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=7.2e-92 Score=821.52 Aligned_cols=543 Identities=21% Similarity=0.317 Sum_probs=456.9
Q ss_pred HHHHHHHHHHHHHHhh-ccCCCCCCCCcHHHHHHHHhh-ccC----CC----CcEEEeCCCchH---HHHHHHhCc---h
Q 003948 161 EQLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHR-VFN----TP----DDKIIWDVGHQA---YVHKILTGR---R 224 (784)
Q Consensus 161 ~~la~~iR~~ii~~v~-~~gGH~gsslg~~el~vaL~~-~~~----~p----~D~~i~s~GH~~---y~~~~l~G~---~ 224 (784)
+++|++||.++++|+. .++||+|++||++|++++||. +++ +| |||||+|+||++ |+.+++.|+ .
T Consensus 5 ~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12754 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPM 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCCH
Confidence 5678999999999997 588999999999999999985 333 23 799999999999 999999997 6
Q ss_pred HHhHHHHhcCC-CCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhC----------CCCeEEEEEcCCcccchhhH
Q 003948 225 SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQAY 293 (784)
Q Consensus 225 ~~l~~~r~~gg-l~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g----------~~~~Vv~viGDGal~eG~~~ 293 (784)
++|.+|||.|+ ++|||+...+++..+.+|++|++++.|+|||+|.|+++ .+++|||++|||+++||++|
T Consensus 85 e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12754 85 EELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHH
Confidence 89999999998 69999987789999999999999999999999999987 37899999999999999999
Q ss_pred HHHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHH
Q 003948 294 EAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD 372 (784)
Q Consensus 294 EAln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~ 372 (784)
||+++|+.+++ ||++|+|+|++ ++ ||+++.+. .+++.+|
T Consensus 165 EA~~~A~~~kL~nLi~ivD~N~~-~i-----dg~~~~~~--------------------------------~~~~~~r-- 204 (663)
T PRK12754 165 EVCSLAGTLKLGKLIAFYDDNGI-SI-----DGHVEGWF--------------------------------TDDTAMR-- 204 (663)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCC-cc-----Ccchhhcc--------------------------------CccHHHH--
Confidence 99999999996 58999999995 33 33322110 1355555
Q ss_pred HHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCcccc---
Q 003948 373 EYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVK--- 449 (784)
Q Consensus 373 ~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~--- 449 (784)
|++|||+++.+|||||+++|.+|+++++.. .++|++|+++|.||+|.+++|+. .++||.+.
T Consensus 205 --------------~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~-~~~Pt~I~~~T~~g~G~~~~e~~-~~~Hg~~l~~~ 268 (663)
T PRK12754 205 --------------FEAYGWHVIRGIDGHDADSIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAGT-HDSHGAPLGDA 268 (663)
T ss_pred --------------HHhcCCeEEeeECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeeeccCccccCCC-ccccCCCCCHH
Confidence 999999998448999999999999998853 57999999999999999988876 57898652
Q ss_pred ---------------ccccc-----------ccc--------------------------cCC-----------------
Q 003948 450 ---------------FDPKT-----------GKQ--------------------------FKT----------------- 460 (784)
Q Consensus 450 ---------------fd~~~-----------g~~--------------------------~~~----------------- 460 (784)
|.... +++ ++.
T Consensus 269 ~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (663)
T PRK12754 269 EIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKL 348 (663)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCchhHHHHHHHHhhhh
Confidence 11110 100 000
Q ss_pred --CCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCC-----hhhhHHhCCCCeeeccccHHHHHHHHHHHHh-cCCe
Q 003948 461 --KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG-----LNYFQKRFPDRCFDVGIAEQHAVTFAAGLAS-EGVK 532 (784)
Q Consensus 461 --~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~g-----l~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~-~G~~ 532 (784)
+.+...++++++++|.++++.+|+++++++|+.+++. ...|+++||+|||++||+||+|+++|+|||+ .|++
T Consensus 349 ~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~~ 428 (663)
T PRK12754 349 QANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGGFL 428 (663)
T ss_pred cccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCCCe
Confidence 0012467789999999999999999999999988875 5789899999999999999999999999999 6799
Q ss_pred eEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHH
Q 003948 533 PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (784)
Q Consensus 533 P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~ 611 (784)
||++||++|++|++|||+. .|++++||++++++.|+ +|+||+|||+++|+++||.||||+|++|+|+.|+..+++.++
T Consensus 429 Pf~~tf~~F~~r~~~qir~-~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~ 507 (663)
T PRK12754 429 PYTSTFLMFVEYARNAVRM-AALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGV 507 (663)
T ss_pred EEEEeeHHHHHHHHHHHHH-HHHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHH
Confidence 9999999999999999975 59999999999999998 799999999999999999999999999999999999999999
Q ss_pred HhCCCCeEEEcCCCCCccccCCCCCCCCCccccceeEeeeCC---cEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccc
Q 003948 612 VIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD---RVAILGYGSIVQQCVLAANMLKSQDISVTVADARF 688 (784)
Q Consensus 612 ~~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG~---dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~s 688 (784)
...++|+|||++|++.+...-.. .....+..|+ ++++++. |++||++|+++++|++|++.|+++||+++|||++|
T Consensus 508 ~~~~gP~yirl~R~~~p~~~~~~-~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s 585 (663)
T PRK12754 508 ERQDGPTALILSRQNLAQQERTE-EQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPS 585 (663)
T ss_pred hCCCCCEEEEeCCCCCCCCCCcc-chhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCc
Confidence 86689999999998764321111 0012344454 8899864 99999999999999999999999999999999999
Q ss_pred cCCCcHH---HHHHHhccC-CeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCH
Q 003948 689 CKPLDTD---LIRQLANEH-EILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSS 764 (784)
Q Consensus 689 lkPlD~e---~i~~~~~~~-~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~ 764 (784)
++|||++ +....+... ...|++|++...||.. ++..++. .+|+ |+|+.||+.++++++||||+
T Consensus 586 ~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~----~~~~~~~--------~igi-~~FG~Sg~~~~l~~~~G~t~ 652 (663)
T PRK12754 586 TDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYK----YVGLNGA--------IVGM-TTFGESAPAELLFEEFGFTV 652 (663)
T ss_pred cCcCCCCCHHHHHhcCccccccceEeecccccchhh----hccCCCC--------EEEe-CCCCCCCCHHHHHHHhCCCH
Confidence 9999986 444555433 2469999987788874 4443332 3677 89999999999999999999
Q ss_pred HHHHHHHHHHh
Q 003948 765 RHISATVLSLL 775 (784)
Q Consensus 765 ~~I~~~i~~ll 775 (784)
++|++++++++
T Consensus 653 e~I~~~~~~~~ 663 (663)
T PRK12754 653 DNVVAKAKALL 663 (663)
T ss_pred HHHHHHHHHhC
Confidence 99999998764
No 15
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=1.6e-91 Score=823.90 Aligned_cols=539 Identities=24% Similarity=0.360 Sum_probs=456.4
Q ss_pred HHHHHHHHHHHHHhh-ccCCCCCCCCcHHHHHHHHhh-ccC----CC----CcEEEeCCCchH---HHHHHHhCc---hH
Q 003948 162 QLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHR-VFN----TP----DDKIIWDVGHQA---YVHKILTGR---RS 225 (784)
Q Consensus 162 ~la~~iR~~ii~~v~-~~gGH~gsslg~~el~vaL~~-~~~----~p----~D~~i~s~GH~~---y~~~~l~G~---~~ 225 (784)
.+|++||.++++|+. .++||+|++||++|++++||+ +++ +| |||||+|+||.+ |+.+++.|+ .+
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~~~~e 81 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYDLSIE 81 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCCCCHH
Confidence 468899999999997 588999999999999999985 443 33 799999999999 999999997 47
Q ss_pred HhHHHHhcCC-CCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhC----------CCCeEEEEEcCCcccchhhHH
Q 003948 226 RMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQAYE 294 (784)
Q Consensus 226 ~l~~~r~~gg-l~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g----------~~~~Vv~viGDGal~eG~~~E 294 (784)
+|.+||+.|+ ++|||++..+++..+++|++|++++.|+|||+|.|+++ .+++|||++|||+++||.+||
T Consensus 82 ~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~E 161 (653)
T TIGR00232 82 DLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYE 161 (653)
T ss_pred HHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHH
Confidence 8999999997 79999987789999999999999999999999999874 478999999999999999999
Q ss_pred HHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHH
Q 003948 295 AMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDE 373 (784)
Q Consensus 295 Aln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~ 373 (784)
|+++|+.+++ ||++|+|+|++ ++ ++++..+. .+++..+
T Consensus 162 A~~~A~~~~L~nLi~ivd~N~~-~i-----~~~~~~~~--------------------------------~~~~~~~--- 200 (653)
T TIGR00232 162 VASLAGHLKLGKLIVLYDSNRI-SI-----DGAVDGSF--------------------------------TEDVAKR--- 200 (653)
T ss_pred HHHHHHHhCCCcEEEEEeCCCe-ee-----cccccccc--------------------------------CccHHHH---
Confidence 9999999995 59999999995 33 22222110 1344555
Q ss_pred HhhhccCCCchhhhhhcCCeEEeec-CCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCcccc---
Q 003948 374 YARGLISASGSTFFEELGLYYIGPV-DGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVK--- 449 (784)
Q Consensus 374 ~~r~~~~~~~~~lfea~G~~~i~~v-DGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~--- 449 (784)
|++|||+++ .| ||||+++|.+|++++++. .++|++|+++|.||+|++++|+. .++||.+.
T Consensus 201 -------------~~a~Gw~~~-~v~DG~D~~ai~~A~~~a~~~-~~~P~~I~~~T~~g~G~~~~e~~-~~~H~~~~~~~ 264 (653)
T TIGR00232 201 -------------FEAYGWEVL-EVEDGHDLAAIDAAIEEAKAS-KDKPTLIEVTTTIGFGSPNKAGT-HGVHGAPLGDE 264 (653)
T ss_pred -------------HHhcCCcEE-EeCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecccCcccCCC-CcccCCCCCHH
Confidence 999999998 57 999999999999999863 35899999999999999988875 57888641
Q ss_pred ---------------cccc-------------cccc--------------------------cC---------------C
Q 003948 450 ---------------FDPK-------------TGKQ--------------------------FK---------------T 460 (784)
Q Consensus 450 ---------------fd~~-------------~g~~--------------------------~~---------------~ 460 (784)
|+.. .+++ ++ .
T Consensus 265 ~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~ 344 (653)
T TIGR00232 265 DVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKA 344 (653)
T ss_pred HHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhhc
Confidence 2210 0100 00 0
Q ss_pred CCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhh-----hHHhCCCCeeeccccHHHHHHHHHHHHh-cCCeeE
Q 003948 461 KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNY-----FQKRFPDRCFDVGIAEQHAVTFAAGLAS-EGVKPF 534 (784)
Q Consensus 461 ~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~-----f~~~~p~R~~d~GIaE~~~vg~AaGlA~-~G~~P~ 534 (784)
..+..+++++|+++|.++++.+|+++++++|+.++++++. |+++||+||||+||+||+|+++|+|||+ .|++||
T Consensus 345 ~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~ 424 (653)
T TIGR00232 345 KLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPY 424 (653)
T ss_pred cCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEE
Confidence 1113467889999999999999999999999998887754 8899999999999999999999999999 679999
Q ss_pred EEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHh
Q 003948 535 CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613 (784)
Q Consensus 535 ~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~ 613 (784)
++||++|++|+++|| ++.|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|+.|+..++++|+..
T Consensus 425 ~~tf~~F~~r~~~~i-r~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~~ 503 (653)
T TIGR00232 425 GGTFLMFVDYARPAI-RLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALES 503 (653)
T ss_pred EEEhHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc
Confidence 999999999999998 5669999999999998887 79999999999999999999999999999999999999999966
Q ss_pred CCCCeEEEcCCCCCccccCCCCCCCCCccccceeEe--eeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCC
Q 003948 614 DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRIL--MEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKP 691 (784)
Q Consensus 614 ~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vl--reG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkP 691 (784)
.++|+|||++|++.+.. .+ .....+..|+ +++ ++|+|++||++|+++++|++|++.|+++||+++|||++|++|
T Consensus 504 ~~gP~~irl~r~~~~~~--~~-~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ikp 579 (653)
T TIGR00232 504 QDGPTALILSRQNLPQL--EE-SSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDL 579 (653)
T ss_pred CCCcEEEEEcCCccCCC--Cc-ccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCcc
Confidence 78999999999875422 11 1113455665 777 678999999999999999999999999999999999999999
Q ss_pred CcHH---HHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHH
Q 003948 692 LDTD---LIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHIS 768 (784)
Q Consensus 692 lD~e---~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~ 768 (784)
||++ ++.++++++..+||+|+|+.+||. .++ +...+++|+ |+|+.+|+++++++++|||+++|+
T Consensus 580 ld~~~~~~~~~~~~~~~~vvtvEe~~~~g~~----~~~--------~~~~~~igv-d~fg~sg~~~~L~~~~Glt~e~I~ 646 (653)
T TIGR00232 580 FDKQDEEYRESVLPANVTRLAVEAGAADEWY----KYA--------GLVGAILGM-DSFGESAPGDKLFEEFGFTVENVV 646 (653)
T ss_pred cccCCHHHHHHHhcccCceEEEecccHhHHH----Hhc--------CCcceEEEe-cCCcCCCCHHHHHHHhCCCHHHHH
Confidence 9764 488888888899999999876663 111 111257888 999999999999999999999999
Q ss_pred HHHHHHh
Q 003948 769 ATVLSLL 775 (784)
Q Consensus 769 ~~i~~ll 775 (784)
++|++++
T Consensus 647 ~~i~~~~ 653 (653)
T TIGR00232 647 AKAKKLL 653 (653)
T ss_pred HHHHHhC
Confidence 9998764
No 16
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=8.1e-87 Score=785.06 Aligned_cols=615 Identities=22% Similarity=0.252 Sum_probs=476.8
Q ss_pred CCCCCCccCCCCcccccCCCHHH-HHHHHHHHHHHHHHHhhc-c------CCCCCCCCcHHHHHHHHhh-ccCCC-----
Q 003948 137 KPPTPLLDTINYPIHMKNLSTED-LEQLAAELRADIVNSVSK-T------GGHLSANLGVVELTLALHR-VFNTP----- 202 (784)
Q Consensus 137 ~~~~~~l~~i~~p~~~k~~~~~~-L~~la~~iR~~ii~~v~~-~------gGH~gsslg~~el~vaL~~-~~~~p----- 202 (784)
...|||++||..-.........+ ++++++.||++++.|+.+ + +||+|+++|++||+.+||. +|+.|
T Consensus 51 ~~~t~y~nti~~~~~~~~pgd~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~ 130 (889)
T TIGR03186 51 AGATPYVNTIAVDQEPPYPGDLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAGDASG 130 (889)
T ss_pred CCCCCCccCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCC
Confidence 44589999998766665554333 466799999999999974 5 6999999999999999984 45422
Q ss_pred CcEEEeCCCchH---HHHHHHhCc--hHHhHHHHhc--C-CCCCCCCCCCCc-ccccCCcccchhHHHHHHHHHHHHHhC
Q 003948 203 DDKIIWDVGHQA---YVHKILTGR--RSRMNTMRKT--S-GLAGFPKREESV-HDAFGAGHSSTSISAGLGMAVARDILG 273 (784)
Q Consensus 203 ~D~~i~s~GH~~---y~~~~l~G~--~~~l~~~r~~--g-gl~g~~~~~e~~-~~~~g~G~~G~~ls~AvG~AlA~~~~g 273 (784)
+| +|+|+||.+ |+.+++.|+ +++|.+|||. + ++++||++...+ +..|.+|++|+|++.|+|||++.|+++
T Consensus 131 rD-~VlskGHasp~lYA~l~l~G~l~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~ 209 (889)
T TIGR03186 131 GD-LVYFQPHSAPGVYARAFLEGFLSDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQ 209 (889)
T ss_pred CC-EEEECCchHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHh
Confidence 56 799999999 899999998 7899999997 4 688988875534 588999999999999999999998543
Q ss_pred -------CCCeEEEEEcCCcccchhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhh
Q 003948 274 -------KNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTN 345 (784)
Q Consensus 274 -------~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~ 345 (784)
.+++|||++|||||+||++|||+.+|++++ +||++|+|+|++ ++ ||++..++.+...|
T Consensus 210 ~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~-ql-----DG~t~~~~~~~e~l-------- 275 (889)
T TIGR03186 210 NRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQ-RL-----DGPVRGNGRIIDEL-------- 275 (889)
T ss_pred hccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCC-cc-----CCccccccccchHH--------
Confidence 379999999999999999999999999988 899999999996 32 67766544321111
Q ss_pred HHHHHHHHHHhhhh-cCCchHHHHHH---------HH---------------HHhhh-ccCCCc--hhhhhhcC---CeE
Q 003948 346 FRKLREAAKSITKQ-IGGQTHEVAAK---------VD---------------EYARG-LISASG--STFFEELG---LYY 394 (784)
Q Consensus 346 ~~~lr~~~~~~~~~-~g~~~~~~~~k---------~~---------------~~~r~-~~~~~~--~~lfea~G---~~~ 394 (784)
-.+++..+|.+++. +|..++.+.+| ++ +|.|. |+...+ ..|.+.+- ++.
T Consensus 276 ~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~ 355 (889)
T TIGR03186 276 ESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDR 355 (889)
T ss_pred HHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhh
Confidence 11122233333322 12221111111 10 11111 110000 00111000 000
Q ss_pred EeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccccccc----------------------
Q 003948 395 IGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDP---------------------- 452 (784)
Q Consensus 395 i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd~---------------------- 452 (784)
. .-+|||+++|.+|+++|++. .++|++|.++|+||+|.+.++.+...+|+..+++.
T Consensus 356 l-~rgGHD~~~i~~A~~~A~~~-~~~PTvIla~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~ 433 (889)
T TIGR03186 356 L-RRGGHDARKLYAAYDRAVRH-EGRPTVILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQL 433 (889)
T ss_pred h-cCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcc
Confidence 0 01799999999999988864 47999999999999999876654567787433211
Q ss_pred -----ccc-------------------------c-c--cCC-----------CCchhhHHHHHHHHHHHHHhh---CCCE
Q 003948 453 -----KTG-------------------------K-Q--FKT-----------KSPTLTYTQYFAESLIKEAET---DDKI 485 (784)
Q Consensus 453 -----~~g-------------------------~-~--~~~-----------~~~~~s~~~af~~aL~~l~~~---d~~i 485 (784)
..+ . + .++ ..+..+.++||++.|..+++. .++|
T Consensus 434 ~~~~~~~~s~~~~~l~~~r~~l~g~~p~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~ri 513 (889)
T TIGR03186 434 KFYKPDEDSAEMRYLHARRAALGGYLPRRRTAATHALAVPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRI 513 (889)
T ss_pred cccCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCccccCCCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCE
Confidence 000 0 0 000 113467899999998887765 4789
Q ss_pred EEEecCCCCCCChhh-------------------------hHHhCCCCeeeccccHHHHHH--HHHHHHhc----CCeeE
Q 003948 486 VAIHAAMGGGTGLNY-------------------------FQKRFPDRCFDVGIAEQHAVT--FAAGLASE----GVKPF 534 (784)
Q Consensus 486 v~i~aD~ggs~gl~~-------------------------f~~~~p~R~~d~GIaE~~~vg--~AaGlA~~----G~~P~ 534 (784)
|.|.+|+..++|+++ |++.+|+|||++||+||+|++ +|+|+|++ |++||
T Consensus 514 V~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf 593 (889)
T TIGR03186 514 VPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPF 593 (889)
T ss_pred EEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEE
Confidence 999999999996643 456789999999999999999 99999988 78999
Q ss_pred EEecHhHH-HHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHH
Q 003948 535 CAIYSSFL-QRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (784)
Q Consensus 535 ~~tys~Fl-~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~ 611 (784)
+.+|++|. +|++|||++. |++++++++++.++|+ .|.+|+|||+.+|++++|.+|||+|+.|+|+.|+..+++.++
T Consensus 594 ~~tya~F~~~Ra~Dqir~a-~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~ 672 (889)
T TIGR03186 594 YIYYSMFGFQRIGDLIWAA-ADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGM 672 (889)
T ss_pred EEehHHhHhhhHHHHHHHH-hhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHH
Confidence 99999995 8999999766 9999999999999998 589999999999999999999999999999999999999876
Q ss_pred Hh-----CCCCeEEEcCCCCCccccCCCCCCC-CCcccc--ce-eEee----eCCcEEEEEechhHHHHHHHHHHHhcC-
Q 003948 612 VI-----DDRPSCFRFPRGNGIGAVLPPNNKG-TPLEIG--KG-RILM----EGDRVAILGYGSIVQQCVLAANMLKSQ- 677 (784)
Q Consensus 612 ~~-----~~~Pv~irl~r~~~~~~~~p~~~~~-~~~~ig--k~-~vlr----eG~dvtIva~Gs~v~~aleAae~L~~~- 677 (784)
.+ .++|+|||+.|.+.+...+++. + ..++.+ |+ ++++ +|.||+|+++|.++++|++|+++|+++
T Consensus 673 ~rm~~~~~~gp~YlRl~r~~~~~p~~~~~--~~~~~~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~ 750 (889)
T TIGR03186 673 REMLERQRDEFYYLTVTNENYAQPSLPED--RLDAVRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDW 750 (889)
T ss_pred HHHHhcCCCceEEEEeCCCCCCCCCcCCC--cccchhcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhh
Confidence 52 4689999999987532222321 1 223444 47 8888 578999999999999999999999987
Q ss_pred CCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCC---C-cCCcHH-------------HHHHHHHhcCCCCCCcceEE
Q 003948 678 DISVTVADARFCKPLDTDLIRQLANEHEILITVEEG---S-VGGFGS-------------HVCHFLTLSGILDGPLKLRS 740 (784)
Q Consensus 678 GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~---~-~gG~gs-------------~V~~~l~~~g~~~~~~~~~~ 740 (784)
||+++|||++|+||||++.+. +++++.++++|++ + .||+++ .|++++.+.. +.++++
T Consensus 751 GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~v~ggLg~~~~p~va~~D~~~avae~i~~~~----p~~~~~ 824 (889)
T TIGR03186 751 GIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYV----PRRYVT 824 (889)
T ss_pred CCCeEEEECCCCCHhHHHHHH--HHHhCCcccccccccccHhhhhCCCCCCeeeecchHHHHHHHHHhhC----CCCEEE
Confidence 999999999999999999986 6778899999997 5 699999 9999998752 568999
Q ss_pred eecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHhcCC
Q 003948 741 MVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP 778 (784)
Q Consensus 741 lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll~~~ 778 (784)
+|+ |+|+.+|++++|+++||+|+++|+.++++++.+.
T Consensus 825 LG~-D~FG~Sgtr~~Lr~~fglda~~Iv~aal~~L~~~ 861 (889)
T TIGR03186 825 LGT-DGFGRSDTRAALRAFFEVDRASIVIAALQALADD 861 (889)
T ss_pred ecc-CCCCCcCCHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999 9999999999999999999999999999998654
No 17
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-87 Score=746.41 Aligned_cols=546 Identities=23% Similarity=0.360 Sum_probs=465.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCcHHHHHHHHhhc---c--CCC----CcEEEeCCCchH---HHHHHHhCc
Q 003948 157 TEDLEQLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHRV---F--NTP----DDKIIWDVGHQA---YVHKILTGR 223 (784)
Q Consensus 157 ~~~L~~la~~iR~~ii~~v~-~~gGH~gsslg~~el~vaL~~~---~--~~p----~D~~i~s~GH~~---y~~~~l~G~ 223 (784)
.+..+++++.||-+.+++|+ +++||+|.+||++|+...||.. + ++| |||||+|.||.+ |++++|+|.
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 45578899999999999998 4999999999999999999853 2 244 899999999999 999999998
Q ss_pred ---hHHhHHHHhcCCC-CCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCC----------CCeEEEEEcCCcccc
Q 003948 224 ---RSRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTA 289 (784)
Q Consensus 224 ---~~~l~~~r~~ggl-~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~----------~~~Vv~viGDGal~e 289 (784)
.++|++|||+++. +|||.....+++...+|.+|+||+.|||||+|.++++. |+++||++|||+++|
T Consensus 83 ~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmE 162 (663)
T COG0021 83 DLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLME 162 (663)
T ss_pred CCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhc
Confidence 5899999999985 99999877899999999999999999999999998764 579999999999999
Q ss_pred hhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHH
Q 003948 290 GQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVA 368 (784)
Q Consensus 290 G~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~ 368 (784)
|+++||..+|++++ .|||+|.|+|+ +|+ ||.+..+ -.+++.
T Consensus 163 Gvs~EA~slAG~l~L~kLIvlyD~N~-Isi-----DG~~~~~--------------------------------f~ed~~ 204 (663)
T COG0021 163 GVSHEAASLAGHLKLGKLIVLYDSND-ISI-----DGDTSLS--------------------------------FTEDVA 204 (663)
T ss_pred ccHHHHHHHHhhcCCCcEEEEEeCCC-cee-----ccCcccc--------------------------------cchhHH
Confidence 99999999999998 88999999998 465 5554311 125677
Q ss_pred HHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc
Q 003948 369 AKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (784)
Q Consensus 369 ~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~ 448 (784)
.| ||++||+++..+||||+++|.+|+++||.. .++|++|+|+|+.|+|.+..|+. .+.||.+
T Consensus 205 ~R----------------feAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~-~dkPtlI~~kTiIG~Gsp~kegt-~~~HGap 266 (663)
T COG0021 205 KR----------------FEAYGWNVIRVIDGHDLEAIDKAIEEAKAS-TDKPTLIIVKTIIGKGSPNKEGT-HKVHGAP 266 (663)
T ss_pred HH----------------HHhcCCeEEEecCCCCHHHHHHHHHHHHhc-CCCCeEEEEEeeeecCCCCcCCC-ccccCCC
Confidence 76 999999999899999999999999999974 57999999999999999887754 6899976
Q ss_pred c------------------ccc------------ccccccC--------------C------------------------
Q 003948 449 K------------------FDP------------KTGKQFK--------------T------------------------ 460 (784)
Q Consensus 449 ~------------------fd~------------~~g~~~~--------------~------------------------ 460 (784)
. |.. +.++..+ +
T Consensus 267 Lg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~~ 346 (663)
T COG0021 267 LGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPK 346 (663)
T ss_pred CCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhhh
Confidence 2 111 0110000 0
Q ss_pred ---CCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh-----hhhH-HhCCCCeeeccccHHHHHHHHHHHHhcC-
Q 003948 461 ---KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQ-KRFPDRCFDVGIAEQHAVTFAAGLASEG- 530 (784)
Q Consensus 461 ---~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl-----~~f~-~~~p~R~~d~GIaE~~~vg~AaGlA~~G- 530 (784)
+.+....|.+..++|..+.+..|+++..+||+.+|+.. ..|. +.|++|++++||+|++|.++++|||++|
T Consensus 347 ~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg 426 (663)
T COG0021 347 FEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGG 426 (663)
T ss_pred hcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcC
Confidence 01124678899999999999999999999999999754 3444 6788999999999999999999999986
Q ss_pred CeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHH
Q 003948 531 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (784)
Q Consensus 531 ~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~ 609 (784)
++||..||..|+.++..++ +.+|+|++|+++|.+|.++ +|+||||||++++++.+|+|||+.|++|+|++|+..+|+.
T Consensus 427 ~~pyggTFlvFsdY~r~Ai-RlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~~ 505 (663)
T COG0021 427 FIPYGGTFLVFSDYARPAV-RLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWKY 505 (663)
T ss_pred ceeecceehhhHhhhhHHH-HHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHHHH
Confidence 6999999999999999997 6899999999999999988 8999999999999999999999999999999999999999
Q ss_pred HHHhCCCCeEEEcCCCCCccccCCCCCCCCCccccceeEeee----CCcEEEEEechhHHHHHHHHHHHhcCCCcEEEee
Q 003948 610 AAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME----GDRVAILGYGSIVQQCVLAANMLKSQDISVTVAD 685 (784)
Q Consensus 610 A~~~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlre----G~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId 685 (784)
|+.+.++|+++.++|++++..+ . . ........+|++++ +.|++||++||+|+.|++|++.|+++|++++||+
T Consensus 506 Al~~~~gPt~LiltRQnlp~l~--~-t-~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS 581 (663)
T COG0021 506 ALERKDGPTALILTRQNLPVLE--R-T-DLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVS 581 (663)
T ss_pred HHhcCCCCeEEEEecCCCCccC--C-C-ccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCCceEEEe
Confidence 9998899999999999976432 1 1 12222445699988 4799999999999999999999998899999999
Q ss_pred ccccCCCcH---HHHHHHhccC-CeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcC
Q 003948 686 ARFCKPLDT---DLIRQLANEH-EILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESG 761 (784)
Q Consensus 686 ~~slkPlD~---e~i~~~~~~~-~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~g 761 (784)
++|+..|+. ++..+++... ...|.||.+...||.. ++..+| ..+|+ ++|+.||+.++++++||
T Consensus 582 ~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~k----y~g~~g--------~~ig~-~~FG~Sap~~~l~~~fG 648 (663)
T COG0021 582 MPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYK----YVGLDG--------AVIGM-DSFGASAPGDELFKEFG 648 (663)
T ss_pred ccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhh----hcCCCC--------cEEee-ccCcCCCCHHHHHHHhC
Confidence 999998876 4555555543 3479999998899983 333222 35676 99999999999999999
Q ss_pred CCHHHHHHHHHHHhc
Q 003948 762 LSSRHISATVLSLLG 776 (784)
Q Consensus 762 l~~~~I~~~i~~ll~ 776 (784)
+|++.|++++++++.
T Consensus 649 ft~e~vv~~~~~~l~ 663 (663)
T COG0021 649 FTVENVVAKAKSLLN 663 (663)
T ss_pred CCHHHHHHHHHHhhC
Confidence 999999999999863
No 18
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=3.1e-85 Score=771.84 Aligned_cols=577 Identities=21% Similarity=0.249 Sum_probs=482.0
Q ss_pred CCCCCccCCCCcccccCCCHHHHHHH-HHHHHHHHHHHhh-cc------CCCCCCCCcHHHHHHHHhh-ccCCC-----C
Q 003948 138 PPTPLLDTINYPIHMKNLSTEDLEQL-AAELRADIVNSVS-KT------GGHLSANLGVVELTLALHR-VFNTP-----D 203 (784)
Q Consensus 138 ~~~~~l~~i~~p~~~k~~~~~~L~~l-a~~iR~~ii~~v~-~~------gGH~gsslg~~el~vaL~~-~~~~p-----~ 203 (784)
..|||++||..-.+.+.....++++. ++.||++++.||. ++ |||+++++|+++|+.+||. +|+.| +
T Consensus 58 ~~t~y~nti~~~~~~~~pg~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~ 137 (891)
T PRK09405 58 ATTPYINTIPVEEEPEYPGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGG 137 (891)
T ss_pred CCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 35999999988888777776666655 8999999999996 33 4999999999999999984 45532 5
Q ss_pred cEEEeCCCchH---HHHHHHhCc--hHHhHHHHhc--C-CCCCCCCCCCC-cccccCCcccchhHHHHHHHHHHHHH---
Q 003948 204 DKIIWDVGHQA---YVHKILTGR--RSRMNTMRKT--S-GLAGFPKREES-VHDAFGAGHSSTSISAGLGMAVARDI--- 271 (784)
Q Consensus 204 D~~i~s~GH~~---y~~~~l~G~--~~~l~~~r~~--g-gl~g~~~~~e~-~~~~~g~G~~G~~ls~AvG~AlA~~~--- 271 (784)
| ||+|+||.+ |+..++.|+ +++|.+|||. | +|++||++... ++..|.+|++|+|++.|+|+|++.|+
T Consensus 138 D-~V~skGHasp~lYA~~~l~G~l~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~ 216 (891)
T PRK09405 138 D-LVFFQGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLEN 216 (891)
T ss_pred C-EEEECchHHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccc
Confidence 6 899999999 899999998 7899999995 4 79999998654 46789999999999999999999994
Q ss_pred ----hCCCCeEEEEEcCCcccchhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhH
Q 003948 272 ----LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNF 346 (784)
Q Consensus 272 ----~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~ 346 (784)
.+.+++|||++|||||+||.+|||+..|++++ +||++|+|+|+| ++ ||++..++.+
T Consensus 217 ~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q-~l-----DG~v~~~~~~------------- 277 (891)
T PRK09405 217 RGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQ-RL-----DGPVRGNGKI------------- 277 (891)
T ss_pred cccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCc-cc-----CCcccccccc-------------
Confidence 45689999999999999999999999999988 899999999997 33 7777655442
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeec----------------------------
Q 003948 347 RKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPV---------------------------- 398 (784)
Q Consensus 347 ~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~v---------------------------- 398 (784)
.+++..+ |+++||+++..+
T Consensus 278 -----------------~~~l~~~----------------f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~ 324 (891)
T PRK09405 278 -----------------IQELEGI----------------FRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGD 324 (891)
T ss_pred -----------------chhHHHH----------------HhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHH
Confidence 1444444 777777766432
Q ss_pred ----------------------------------------CCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCC-Chh
Q 003948 399 ----------------------------------------DGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGY-PPA 437 (784)
Q Consensus 399 ----------------------------------------DGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~-~~a 437 (784)
+|||+++|.+|++++++. .++|++|.++|+||+|. +.+
T Consensus 325 yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~-~~~PtvIia~TvkG~G~~~~~ 403 (891)
T PRK09405 325 YQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH-KGQPTVILAKTIKGYGMGEAG 403 (891)
T ss_pred HHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC-CCCCEEEEEeceecCCCCccc
Confidence 399999999999988864 47899999999999999 555
Q ss_pred hhcccccCccccccc---------------------------ccc-------------------------cccC------
Q 003948 438 EAAADRMHGVVKFDP---------------------------KTG-------------------------KQFK------ 459 (784)
Q Consensus 438 e~~~~~~Hg~~~fd~---------------------------~~g-------------------------~~~~------ 459 (784)
|+. ..+|+..+.+. +.+ ..++
T Consensus 404 e~~-~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~ 482 (891)
T PRK09405 404 EGK-NIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRPKFEPLEVPALSA 482 (891)
T ss_pred CCC-ccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChhh
Confidence 554 56787422110 000 0000
Q ss_pred -------CCCchhhHHHHHHHHHHHHHhh---CCCEEEEecCCCCCCCh-------------------------hhhHHh
Q 003948 460 -------TKSPTLTYTQYFAESLIKEAET---DDKIVAIHAAMGGGTGL-------------------------NYFQKR 504 (784)
Q Consensus 460 -------~~~~~~s~~~af~~aL~~l~~~---d~~iv~i~aD~ggs~gl-------------------------~~f~~~ 504 (784)
...+..+.+++|++.|.+++++ .++||.+.+|+..++|+ ..|+++
T Consensus 483 ~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~ 562 (891)
T PRK09405 483 FEALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKES 562 (891)
T ss_pred HHHhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHc
Confidence 0023467899999999999996 89999999999998887 457889
Q ss_pred CCCCeeeccccHHHHHH--HHHHHHhc----CCeeEEEecHhH-HHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCC
Q 003948 505 FPDRCFDVGIAEQHAVT--FAAGLASE----GVKPFCAIYSSF-LQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPT 576 (784)
Q Consensus 505 ~p~R~~d~GIaE~~~vg--~AaGlA~~----G~~P~~~tys~F-l~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~T 576 (784)
||+|||++||+||+|++ +|+|+|++ |++||+.+|++| ++|++|||++.+++++.+|+++++++|+ .+.+|.|
T Consensus 563 ~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~q 642 (891)
T PRK09405 563 KDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQ 642 (891)
T ss_pred CCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCccc
Confidence 99999999999999999 99999988 789999999999 6899999999999999999999999998 5889999
Q ss_pred cCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHh---CCC--CeEEEcCCCCCccccCCCCCCCCCccccce-eEee
Q 003948 577 HCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDR--PSCFRFPRGNGIGAVLPPNNKGTPLEIGKG-RILM 650 (784)
Q Consensus 577 Hq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~---~~~--Pv~irl~r~~~~~~~~p~~~~~~~~~igk~-~vlr 650 (784)
||+.+|.+++|.+|||+||.|+|+.|+..+++.++.+ ..+ |.|+|+...+.. .|..++++.+.++|+ ++++
T Consensus 643 Hqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~---~~~~pe~~~~~igKg~y~Lr 719 (891)
T PRK09405 643 HEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYH---QPAMPEGAEEGILKGMYKLE 719 (891)
T ss_pred CCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCC---CCCCCcccccccceEEEEec
Confidence 9999999999999999999999999999999998762 334 677887522221 122223567889997 9999
Q ss_pred eCC------cEEEEEechhHHHHHHHHHHHhc-CCCcEEEeeccccCCCcHHHHHHHh---------ccCCeEEEEcCCC
Q 003948 651 EGD------RVAILGYGSIVQQCVLAANMLKS-QDISVTVADARFCKPLDTDLIRQLA---------NEHEILITVEEGS 714 (784)
Q Consensus 651 eG~------dvtIva~Gs~v~~aleAae~L~~-~GI~v~VId~~slkPlD~e~i~~~~---------~~~~~vVvvEe~~ 714 (784)
+|. ||+|+++|.++++|++||++|++ +||+++|||++|+||||++.+.... +++..|+++|++
T Consensus 720 ~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~- 798 (891)
T PRK09405 720 TAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKG- 798 (891)
T ss_pred cCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcc-
Confidence 976 89999999999999999999998 6999999999999999999987655 556678888888
Q ss_pred cCCcH-------HHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHhcCC
Q 003948 715 VGGFG-------SHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP 778 (784)
Q Consensus 715 ~gG~g-------s~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll~~~ 778 (784)
.||++ +.|++.+.+.. +.+++++|+ |+|+.+|++++|+++||||+++|++++++++.+.
T Consensus 799 ~gG~~Vtv~D~~~aVae~la~~~----p~~~~~LGv-D~FG~SGt~~~L~~~fglda~~Iv~aal~~La~~ 864 (891)
T PRK09405 799 AEGPVVAATDYMKLFAEQIRAFV----PGDYVVLGT-DGFGRSDTREALRRFFEVDAEYVVVAALKALADE 864 (891)
T ss_pred cCCcEEEecchHHHHHHHHHHhC----CCCEEEEec-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 67777 88999887742 568999999 9999999999999999999999999999998654
No 19
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=2.3e-83 Score=759.15 Aligned_cols=575 Identities=22% Similarity=0.265 Sum_probs=466.7
Q ss_pred CCCCCCccCCCCcccccCCCHHHHHH-HHHHHHHHHHHHhhc-cC------CCCCCCCcHHHHHHHHhh-ccC-C----C
Q 003948 137 KPPTPLLDTINYPIHMKNLSTEDLEQ-LAAELRADIVNSVSK-TG------GHLSANLGVVELTLALHR-VFN-T----P 202 (784)
Q Consensus 137 ~~~~~~l~~i~~p~~~k~~~~~~L~~-la~~iR~~ii~~v~~-~g------GH~gsslg~~el~vaL~~-~~~-~----p 202 (784)
...|||++||..-.+.+-....++++ ++..||++++.||.+ +. ||+|+++|+++|+.+||. +|+ + .
T Consensus 65 ~~~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~ 144 (896)
T PRK13012 65 LLTTPYVNTIPVDQQPPYPGDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGG 144 (896)
T ss_pred CCCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCC
Confidence 34599999998877777666555555 899999999999963 44 999999999999999984 454 1 3
Q ss_pred CcEEEeCCCchH---HHHHHHhCc--hHHhHHHHhc---CCCCCCCCCCCCc-ccccCCcccchhHHHHHHHHHHHHH--
Q 003948 203 DDKIIWDVGHQA---YVHKILTGR--RSRMNTMRKT---SGLAGFPKREESV-HDAFGAGHSSTSISAGLGMAVARDI-- 271 (784)
Q Consensus 203 ~D~~i~s~GH~~---y~~~~l~G~--~~~l~~~r~~---ggl~g~~~~~e~~-~~~~g~G~~G~~ls~AvG~AlA~~~-- 271 (784)
+| +|+|+||.+ |+.+++.|+ +++|.+|||. +|+++||++...| +..|.+|++|+|++.|+|+|++.|+
T Consensus 145 ~D-~V~skGHasp~lYA~~~l~G~l~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~ 223 (896)
T PRK13012 145 GD-LVYFQPHSAPGIYARAFLEGRLSEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQ 223 (896)
T ss_pred CC-EEEECcchHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhccccc
Confidence 79 699999999 899999998 7899999998 4699999986644 6889999999999999999999994
Q ss_pred -----hCCCCeEEEEEcCCcccchhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhh
Q 003948 272 -----LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTN 345 (784)
Q Consensus 272 -----~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~ 345 (784)
...+++|||++|||||+||.+|||+..|++++ +||++|+|+|++ ++ ||++..++.+
T Consensus 224 ~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~-~l-----DG~v~~~~~~------------ 285 (896)
T PRK13012 224 HRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQ-RL-----DGPVRGNGRI------------ 285 (896)
T ss_pred ccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCc-cc-----cCcccccccc------------
Confidence 45679999999999999999999999999988 899999999997 33 7777655432
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeec-------------------------C-
Q 003948 346 FRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPV-------------------------D- 399 (784)
Q Consensus 346 ~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~v-------------------------D- 399 (784)
.+++..+ |+++||+++..+ |
T Consensus 286 ------------------~~~l~~~----------------f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg 331 (896)
T PRK13012 286 ------------------IQELEAL----------------FRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDG 331 (896)
T ss_pred ------------------chHHHHH----------------HHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcH
Confidence 2455555 888888877432 7
Q ss_pred ------------------------------------------CCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChh
Q 003948 400 ------------------------------------------GHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPA 437 (784)
Q Consensus 400 ------------------------------------------Ghd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~a 437 (784)
|||+++|.+|++++++. .++|++|.++|+||+|.+.+
T Consensus 332 ~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~-~~~PtvIla~TvkG~G~~~~ 410 (896)
T PRK13012 332 QFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH-KGQPTVILAKTKKGYGMGEA 410 (896)
T ss_pred HHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcc
Confidence 99999999999988763 46899999999999999844
Q ss_pred -hhcccccCcccc--------------------------ccc-ccc-----------c--------------ccC-C---
Q 003948 438 -EAAADRMHGVVK--------------------------FDP-KTG-----------K--------------QFK-T--- 460 (784)
Q Consensus 438 -e~~~~~~Hg~~~--------------------------fd~-~~g-----------~--------------~~~-~--- 460 (784)
|+. ..+|+..+ |.. +.. + +++ +
T Consensus 411 ~e~~-~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~~~l~g~~P~r~~~~~~l~~p~~~ 489 (896)
T PRK13012 411 GEGR-MTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARRAALGGYLPRRRTAAPPLPVPPLS 489 (896)
T ss_pred cCCC-cccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccccHHHHHHHHHHHHhcCcCCcccccccccCCCchh
Confidence 543 56787321 110 000 0 000 0
Q ss_pred ---------CCchhhHHHHHHHHHHHHHhh---CCCEEEEecCCCCCCChh-------------------------hhHH
Q 003948 461 ---------KSPTLTYTQYFAESLIKEAET---DDKIVAIHAAMGGGTGLN-------------------------YFQK 503 (784)
Q Consensus 461 ---------~~~~~s~~~af~~aL~~l~~~---d~~iv~i~aD~ggs~gl~-------------------------~f~~ 503 (784)
..+..+.+++|++.|.++++. .++||++++|+..++|++ .|++
T Consensus 490 ~~~~~~~~~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke 569 (896)
T PRK13012 490 AFAQFALGAGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYRE 569 (896)
T ss_pred hHHHhhcccCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhh
Confidence 113457899999999999988 899999999999888662 3457
Q ss_pred hCCCCeeeccccHHHHHH--HHHHHHhc----CCeeEEEecHhH-HHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCC
Q 003948 504 RFPDRCFDVGIAEQHAVT--FAAGLASE----GVKPFCAIYSSF-LQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGP 575 (784)
Q Consensus 504 ~~p~R~~d~GIaE~~~vg--~AaGlA~~----G~~P~~~tys~F-l~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~ 575 (784)
++|+|||++||+||+|++ +|+|+|+. |++||+.+|++| .+|++||++..++++..+|+++++++|+ +|++|+
T Consensus 570 ~~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~ 649 (896)
T PRK13012 570 AKDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGL 649 (896)
T ss_pred CCCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCC
Confidence 899999999999999998 88888776 679999999999 6999999999888888889999999987 699999
Q ss_pred CcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHh-----CCCCeEEEcCCCCCccccCCCCCCCCCccccceeEee
Q 003948 576 THCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI-----DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILM 650 (784)
Q Consensus 576 THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~-----~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlr 650 (784)
|||+.++++++|++||++||.|+|+.|+..+++.++++ .+.|+|||+.|++.+...+|+. ....+..|+ ++++
T Consensus 650 THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~~~~-~~~~i~kG~-y~l~ 727 (896)
T PRK13012 650 QHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEG-AEEGILKGM-YRLA 727 (896)
T ss_pred CCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCCCCcc-chhccccCc-EEEe
Confidence 99999999999999999999999999999999998854 2679999999988642233332 112333444 7774
Q ss_pred ---eCCcEEEEEechhHHHHHHHHHHHhcC-CCcEEEeeccccCCCcHHHH-------------------HHHhcc-CCe
Q 003948 651 ---EGDRVAILGYGSIVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLI-------------------RQLANE-HEI 706 (784)
Q Consensus 651 ---eG~dvtIva~Gs~v~~aleAae~L~~~-GI~v~VId~~slkPlD~e~i-------------------~~~~~~-~~~ 706 (784)
+|.|++|+++|+++++|++|+++|+++ ||+++|||++|++|||++.+ .+++.. ..+
T Consensus 728 ~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p 807 (896)
T PRK13012 728 AAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAAERANLLGPAEEARVPYVTQCLAGTRGP 807 (896)
T ss_pred ccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHHHHHhhcCCCccccccHHHHhhcccCCC
Confidence 467999999999999999999999999 99999999999999999976 223322 245
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHhcCC
Q 003948 707 LITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP 778 (784)
Q Consensus 707 vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll~~~ 778 (784)
+|+++++.. .|++.+.+. .+.+++++|+ |+|+.||++++++++||+|+++|++++++++.+.
T Consensus 808 ~Va~~D~~~-----aVae~l~~~----~~~~~~~LGv-D~FG~Sg~~~~L~~~fGlda~~Iv~aal~~La~~ 869 (896)
T PRK13012 808 VVAATDYVR-----AVPEQIRAF----VPARYVTLGT-DGFGRSDTRAALRRFFEVDRHSIVLAALKALADD 869 (896)
T ss_pred eEEecchHH-----HHHHHHHHh----CCCCeEEEee-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 566555532 444555442 1458889998 9999999999999999999999999999998654
No 20
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=1.9e-72 Score=578.11 Aligned_cols=270 Identities=60% Similarity=0.969 Sum_probs=198.4
Q ss_pred ccCCCCcccccCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhC
Q 003948 143 LDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTG 222 (784)
Q Consensus 143 l~~i~~p~~~k~~~~~~L~~la~~iR~~ii~~v~~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G 222 (784)
|++|+.|.|||+|+.+||++||+|||.+|++.++++|||++|+||+|||++|||++||.|+|+||||+|||+|+||+|||
T Consensus 1 L~~I~~p~dlk~ls~~eL~~La~eiR~~ii~~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTG 80 (270)
T PF13292_consen 1 LDKINSPEDLKKLSIEELEQLAQEIREFIIETVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTG 80 (270)
T ss_dssp GGG-SSHHHHTTS-GGGHHHHHHHHHHHHHHHCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTT
T ss_pred CCCCCCHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhc
Q 003948 223 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL 302 (784)
Q Consensus 223 ~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~ 302 (784)
|++.|.|+||.||++|||+|.||+||.|++||+|++||+|+|||.|+++++++++||+|||||+|+.||+|||||+|+..
T Consensus 81 R~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~ 160 (270)
T PF13292_consen 81 RRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHL 160 (270)
T ss_dssp TCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHH
T ss_pred cHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCC
Q 003948 303 DANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISAS 382 (784)
Q Consensus 303 ~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~ 382 (784)
+.|++||+|||+|+ ..++||+++++|++++.++.|+.+|+.+|++.+.+ ....+...|+++..+++ .
T Consensus 161 ~~~liVILNDN~mS---------Is~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~-~~~~~~~~r~~~s~K~~-~-- 227 (270)
T PF13292_consen 161 KSNLIVILNDNEMS---------ISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKI-PPIEEFAKRIKESLKGF-S-- 227 (270)
T ss_dssp T-SEEEEEEE-SBS---------SSB--SSHCCC----------------------------------------------
T ss_pred CCCEEEEEeCCCcc---------cCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhh-hHHHHHHHHHhhhhhhh-h--
Confidence 99999999999983 35789999999999999999999999999998877 66778888888888888 3
Q ss_pred chhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 003948 383 GSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVT 428 (784)
Q Consensus 383 ~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T 428 (784)
+ ++||++||.|+||+||||+++|.++|+++|+ .++|++|||.|
T Consensus 228 ~-~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~--~~gPvllHV~T 270 (270)
T PF13292_consen 228 P-NLFEELGFDYIGPIDGHDLEELIEVLENAKD--IDGPVLLHVIT 270 (270)
T ss_dssp --CCCHHCT-EEEEEEETT-HHHHHHHHHHHCC--SSSEEEEEEE-
T ss_pred H-HHHHHcCCeEEeccCCCCHHHHHHHHHHHhc--CCCCEEEEEeC
Confidence 2 8999999999999999999999999999998 48999999998
No 21
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=1.2e-66 Score=606.44 Aligned_cols=613 Identities=21% Similarity=0.270 Sum_probs=456.5
Q ss_pred CCCCCCccCCCCcccccCCCHHHHHHH-HHHHHHHHHHHhh-cc------CCCCCCCCcHHHHHHHHhh-ccCC-C----
Q 003948 137 KPPTPLLDTINYPIHMKNLSTEDLEQL-AAELRADIVNSVS-KT------GGHLSANLGVVELTLALHR-VFNT-P---- 202 (784)
Q Consensus 137 ~~~~~~l~~i~~p~~~k~~~~~~L~~l-a~~iR~~ii~~v~-~~------gGH~gsslg~~el~vaL~~-~~~~-p---- 202 (784)
...|||++||..-...+.....++++. ++.||++++.|+. .+ +||+|+++|+++|+.+||+ +|+. |
T Consensus 51 ~~~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~ 130 (885)
T TIGR00759 51 GTTTDYINTIPVEEQPAYPGDLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGG 130 (885)
T ss_pred CCCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCC
Confidence 445999999988777776666665555 6999999999997 46 8999999999999999985 4542 2
Q ss_pred CcEEEeCCCchH---HHHHHHhCc--hHHhHHHHh---cCCCCCCCCCCCCc-ccccCCcccchhHHHHHHHHHHHHH--
Q 003948 203 DDKIIWDVGHQA---YVHKILTGR--RSRMNTMRK---TSGLAGFPKREESV-HDAFGAGHSSTSISAGLGMAVARDI-- 271 (784)
Q Consensus 203 ~D~~i~s~GH~~---y~~~~l~G~--~~~l~~~r~---~ggl~g~~~~~e~~-~~~~g~G~~G~~ls~AvG~AlA~~~-- 271 (784)
+| +|+|+||.+ |+.+++.|+ +++|.+||| .+++++||++...+ +..|.+|++|+|++.|+|+|++.|+
T Consensus 131 rD-~VlSKGHasp~lYA~L~l~G~ls~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~ 209 (885)
T TIGR00759 131 GD-LVFFQGHAAPGIYARAFLEGRLTEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLE 209 (885)
T ss_pred CC-EEEECCcHHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHH
Confidence 78 599999999 899999997 789999999 45799999986544 4789999999999999999999997
Q ss_pred -----hCCCCeEEEEEcCCcccchhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhh
Q 003948 272 -----LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTN 345 (784)
Q Consensus 272 -----~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~ 345 (784)
.+.+++|||++|||||+||++|||+..|++++ +||++|+|+|++ ++ ||+++.++.+...|++
T Consensus 210 ~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~-ql-----DG~v~~~~~i~e~le~------ 277 (885)
T TIGR00759 210 NRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQ-RL-----DGPVRGNGKIIQELES------ 277 (885)
T ss_pred hhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCC-cc-----CCccccccccchhHHH------
Confidence 56789999999999999999999999999988 899999999996 33 7777765543222222
Q ss_pred HHHHHHHHHHhhhhc-CCchH---------HHHHHHH---------------HHhhh-ccCCCc--hhhhhhcC---CeE
Q 003948 346 FRKLREAAKSITKQI-GGQTH---------EVAAKVD---------------EYARG-LISASG--STFFEELG---LYY 394 (784)
Q Consensus 346 ~~~lr~~~~~~~~~~-g~~~~---------~~~~k~~---------------~~~r~-~~~~~~--~~lfea~G---~~~ 394 (784)
.+|..+|++++.+ |..++ .+..+++ +|.|. |+...+ ..+.+.+- ++.
T Consensus 278 --~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~ 355 (885)
T TIGR00759 278 --LFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWA 355 (885)
T ss_pred --HHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhh
Confidence 2334444444331 22222 1111111 11111 111110 01111110 001
Q ss_pred EeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccccccc----------------------
Q 003948 395 IGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDP---------------------- 452 (784)
Q Consensus 395 i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd~---------------------- 452 (784)
. ..+|||+++|.+|++++++. .++|++|.++|+||+|.+....+...+|+..+.+.
T Consensus 356 l-~rgGHD~~~I~~A~~~A~~~-~grPTvIlA~TvKG~G~~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~ 433 (885)
T TIGR00759 356 L-NRGGHDPRKVYAAYAAAQEH-KGQPTVILAKTIKGYGMGDAAESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEEL 433 (885)
T ss_pred c-cCCCCCHHHHHHHHHHHHhC-CCCCEEEEEeeeecCCCChhhCCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccC
Confidence 1 23799999999999888764 46899999999999999844334467887432111
Q ss_pred -----ccc-------------------------ccc--C-----------CCCchhhHHHHHHHHHHHHHhhC---CCEE
Q 003948 453 -----KTG-------------------------KQF--K-----------TKSPTLTYTQYFAESLIKEAETD---DKIV 486 (784)
Q Consensus 453 -----~~g-------------------------~~~--~-----------~~~~~~s~~~af~~aL~~l~~~d---~~iv 486 (784)
+.+ ..+ + ...+..|.+++|.+.|..+++.. ++||
T Consensus 434 ~~~~~~~~s~e~~y~~~rr~~Lgg~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riV 513 (885)
T TIGR00759 434 PYYHPGEGSPEVRYLLARRQALGGYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIV 513 (885)
T ss_pred CCcCCCCCCHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCccccccee
Confidence 000 000 0 01145788999999999999874 5899
Q ss_pred EEecCCCCCCChhhhHHh-------------------------CCCCeeeccccHHHHHH--HHHHHHhc--C--CeeEE
Q 003948 487 AIHAAMGGGTGLNYFQKR-------------------------FPDRCFDVGIAEQHAVT--FAAGLASE--G--VKPFC 535 (784)
Q Consensus 487 ~i~aD~ggs~gl~~f~~~-------------------------~p~R~~d~GIaE~~~vg--~AaGlA~~--G--~~P~~ 535 (784)
.|.+|+..++|+++|-.+ -.+|+++.||+|.++++ +|+|.|+. | +.||.
T Consensus 514 pi~pDeartfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~y 593 (885)
T TIGR00759 514 PIVPDEARTFGMEGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFY 593 (885)
T ss_pred ecCCCccccCChHHhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeee
Confidence 999999999999776432 24799999999999998 47888774 6 78999
Q ss_pred EecHhH-HHHHHHHHHHHhhcCCCCEEEEeeCCCC-C-CCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHH
Q 003948 536 AIYSSF-LQRGYDQVVHDVDLQKLPVRFAMDRAGL-V-GADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV 612 (784)
Q Consensus 536 ~tys~F-l~ra~dQi~~~~a~~~lpV~~v~~~~G~-~-G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~ 612 (784)
..|++| +||..|.+ +.+|.|...-.+++..+|. + ...|-+||......+...+||++.|.|+...|+..++..++.
T Consensus 594 i~YsmFgfqR~gD~~-waa~d~~argfl~g~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~ 672 (885)
T TIGR00759 594 IYYSMFGFQRIGDLC-WAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLR 672 (885)
T ss_pred EeeccccccchHHHH-HHHhhhcCCceEeccCCCcccCCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHH
Confidence 999999 99999987 6899999999999988887 2 456899998888778889999999999999999999999998
Q ss_pred hC---CCCeEEEcCCCCCccccCCCCCCCCCccccce-eEeeeC------CcEEEEEechhHHHHHHHHHHHhcC-CCcE
Q 003948 613 ID---DRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKG-RILMEG------DRVAILGYGSIVQQCVLAANMLKSQ-DISV 681 (784)
Q Consensus 613 ~~---~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~-~vlreG------~dvtIva~Gs~v~~aleAae~L~~~-GI~v 681 (784)
+. ...++++++..|.. ...|+.+++..-.+-|+ |+++++ .+|.|+++|+.+.++++|+++|+++ |+.+
T Consensus 673 rm~~~~~~v~yylt~~ne~-~~qp~~p~~~~egIlkG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~a 751 (885)
T TIGR00759 673 RMYGEQEDVFYYVTVMNEN-YVQPPMPEGAEEGILKGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVAS 751 (885)
T ss_pred HHhhCCCCEEEEEEecCCC-CCCCCCCcchHHhHHhCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCC
Confidence 53 34688888874421 22333222222223343 777652 4799999999999999999999986 9999
Q ss_pred EEeeccccCCCcHHHH-------------------HHHhcc-CCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEe
Q 003948 682 TVADARFCKPLDTDLI-------------------RQLANE-HEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSM 741 (784)
Q Consensus 682 ~VId~~slkPlD~e~i-------------------~~~~~~-~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~l 741 (784)
+|++++|.+.|.++.. .+++.. ...+|++-|.. -.+...|..++ +.++..+
T Consensus 752 dVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v~~~L~~~~gP~va~tDy~-~~~~~qir~~v--------p~~~~~L 822 (885)
T TIGR00759 752 DVWSVTSFTELARDGHDVERWNLLHPTETPRVSYVAQVLNEADAPVIASTDYV-RAFAEQIRPYV--------PRKYVTL 822 (885)
T ss_pred cEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHHHHHhccCCCCEEEEccch-hhhHHHHhhhc--------CCCceEe
Confidence 9999999988877633 222222 34788887764 22344443333 4578888
Q ss_pred ecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHhcCC
Q 003948 742 VLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP 778 (784)
Q Consensus 742 g~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll~~~ 778 (784)
|. |.|+.|+++++++++|++|+++|+.++++.|.+.
T Consensus 823 Gt-DgFGrSdtr~~lr~~fevDa~~IV~AAL~aL~~~ 858 (885)
T TIGR00759 823 GT-DGFGRSDTRENLRHFFEVDAKSVVLAALYALADD 858 (885)
T ss_pred cC-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 96 9999999999999999999999999999988644
No 22
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7e-67 Score=537.76 Aligned_cols=304 Identities=35% Similarity=0.578 Sum_probs=289.4
Q ss_pred hhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHH
Q 003948 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQ 543 (784)
Q Consensus 464 ~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ 543 (784)
..+++++|++.|.++.+++++||++++|+.+|+++..|.++||+||||+||+||.|+|+|+|+|+.|++||+++|+.|+.
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s 85 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLS 85 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceeechHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -HHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEE
Q 003948 544 -RGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621 (784)
Q Consensus 544 -ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~ir 621 (784)
|++|||++++|++++||+++++++|+ .|+||+|||..+|+++||.+||++|++|+|+.|.+.++.++.+ .++|+|+|
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~-~~GP~Y~R 164 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD-YKGPVYMR 164 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-cCCCEEEE
Confidence 99999999999999999999999999 6999999999999999999999999999999999999999976 79999999
Q ss_pred cCCCCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh
Q 003948 622 FPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA 701 (784)
Q Consensus 622 l~r~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~ 701 (784)
+.|.+.+.. +++ .++.|++||++++|+|+|++||++|.|+..+++||+.|+++||+++|||+.++||+|++.+.+.+
T Consensus 165 l~R~~~p~~-~~~--~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A 241 (312)
T COG3958 165 LGRGKVPVV-VDE--GGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAA 241 (312)
T ss_pred ecCCCCCce-ecC--CCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHH
Confidence 999775432 222 25899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 003948 702 NEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 775 (784)
Q Consensus 702 ~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll 775 (784)
++++.|||+|||+ .||+|+.|++.+.+++ +.+++++|+||+|+.+|...+++++|||+++.|++++++++
T Consensus 242 ~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v~~~~ 312 (312)
T COG3958 242 RETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARVLELL 312 (312)
T ss_pred hhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHHHHHhCCCHHHHHHHHHhhC
Confidence 9999999999998 6999999999999986 67999999999999999999999999999999999999874
No 23
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=4.4e-57 Score=491.93 Aligned_cols=306 Identities=19% Similarity=0.280 Sum_probs=268.1
Q ss_pred hhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCC----hhhhHHhCCC-CeeeccccHHHHHHHHHHHHhcCCeeEEEe-c
Q 003948 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRFPD-RCFDVGIAEQHAVTFAAGLASEGVKPFCAI-Y 538 (784)
Q Consensus 465 ~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~g----l~~f~~~~p~-R~~d~GIaE~~~vg~AaGlA~~G~~P~~~t-y 538 (784)
.+++++|+++|.+++++||+++++++|++.++| +++|+++||+ ||||+||+||+|+|+|+|||+.|++||+++ |
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~ 83 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMN 83 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeeh
Confidence 578999999999999999999999999975555 5899999999 999999999999999999999999999986 6
Q ss_pred HhHHHHHHHHHHHHhhcC--------CCCEEEEeeCCCCC-CCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHH
Q 003948 539 SSFLQRGYDQVVHDVDLQ--------KLPVRFAMDRAGLV-GADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (784)
Q Consensus 539 s~Fl~ra~dQi~~~~a~~--------~lpV~~v~~~~G~~-G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~ 609 (784)
+.|++|++|||++++|++ ++|++++ ++|+. +.+|+|||+..+ ++||+||||+|++|+|+.|++.++++
T Consensus 84 ~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~--~~g~~~~~~G~tHs~~~e-a~~~~iPgl~V~~Psd~~d~~~~l~~ 160 (327)
T CHL00144 84 MGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIR--GPGGVGRQLGAEHSQRLE-SYFQSVPGLQIVACSTPYNAKGLLKS 160 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCccCCEEEE--ecCCCCCCCCccccccHH-HHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 678899999999999987 4555555 55554 479999976665 99999999999999999999999999
Q ss_pred HHHhCCCCeEEEcCCCCCc-cccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccc
Q 003948 610 AAVIDDRPSCFRFPRGNGI-GAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARF 688 (784)
Q Consensus 610 A~~~~~~Pv~irl~r~~~~-~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~s 688 (784)
|++ .++|+|||+++.... ...+++ +.+.+++||++++++|+|++||+||.++++|++|++.|+++||+++|||++|
T Consensus 161 a~~-~~~Pv~ire~~~l~~~~~~v~~--~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 237 (327)
T CHL00144 161 AIR-SNNPVIFFEHVLLYNLKEEIPD--NEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLIS 237 (327)
T ss_pred HHh-CCCcEEEEEcHHhcCCCCCCCC--CCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 986 689999995544321 112332 2467889999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCccccc-CCCHHHHHHHcCCCHHH
Q 003948 689 CKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYID-HGSPADQLEESGLSSRH 766 (784)
Q Consensus 689 lkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~-~g~~~elle~~gl~~~~ 766 (784)
++|||+++|.++++++++|||+|||. .||||++|++++.++++...+.++++++++|.|++ +|+.+++ +|+|+++
T Consensus 238 ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~---~gl~~~~ 314 (327)
T CHL00144 238 LKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEA---TVIQPAQ 314 (327)
T ss_pred CCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHH---hCCCHHH
Confidence 99999999999999999999999998 69999999999999875223568999999999998 5666654 5999999
Q ss_pred HHHHHHHHhcCCc
Q 003948 767 ISATVLSLLGRPK 779 (784)
Q Consensus 767 I~~~i~~ll~~~~ 779 (784)
|+++|+++++.+|
T Consensus 315 I~~~i~~~l~~~~ 327 (327)
T CHL00144 315 IIEAVEQIITNKK 327 (327)
T ss_pred HHHHHHHHHhccC
Confidence 9999999986654
No 24
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=7.2e-56 Score=483.06 Aligned_cols=306 Identities=25% Similarity=0.354 Sum_probs=272.4
Q ss_pred hhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh----hhhHHhC-CCCeeeccccHHHHHHHHHHHHhcCCeeEEEec
Q 003948 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL----NYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIY 538 (784)
Q Consensus 464 ~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl----~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~ty 538 (784)
..+|+++|+++|.+++++|++++++++|++.++|+ ++|+++| |+||||+||+||+|+++|+|||+.|++||+++|
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 35899999999999999999999999999876663 8999999 999999999999999999999999999999998
Q ss_pred H-hHHHHHHHHHHHHhhcCC--------CCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHH
Q 003948 539 S-SFLQRGYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (784)
Q Consensus 539 s-~Fl~ra~dQi~~~~a~~~--------lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~ 609 (784)
+ .|++||+|||++++|+++ +|++++..+ |..+.+|+|||+..+ ++||++|||+|++|+|+.|++.++++
T Consensus 83 ~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~-g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 83 TFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPN-GAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCC-CCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 7 678999999999999884 666665543 446789999987777 99999999999999999999999999
Q ss_pred HHHhCCCCeEEEcCCCCCcc-ccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccc
Q 003948 610 AAVIDDRPSCFRFPRGNGIG-AVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARF 688 (784)
Q Consensus 610 A~~~~~~Pv~irl~r~~~~~-~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~s 688 (784)
|++ .++|++|++++..... .++++ +.+.+++||++++++|+|++||+||+++..|++|++.|+++||+++|||+++
T Consensus 161 a~~-~~~Pv~i~~~~~~~~~~~~~~~--~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~ 237 (327)
T PRK09212 161 AIR-DPNPVIFLENEILYGHSHEVPE--EEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRT 237 (327)
T ss_pred HHh-CCCcEEEEEchhhcCCCCCCCC--CCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 986 5899999886643221 11222 2467889999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCC-CHHH
Q 003948 689 CKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL-SSRH 766 (784)
Q Consensus 689 lkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl-~~~~ 766 (784)
++|||++.+.+.++++++|||+|||. .|||+++|++++.++++.+.+.++++++++|.|+++| ++++++|| ++++
T Consensus 238 l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~---~~le~~~l~~~~~ 314 (327)
T PRK09212 238 LRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA---ANLEKLALPSEED 314 (327)
T ss_pred CCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---HHHHHhcCCCHHH
Confidence 99999999999999999999999998 6999999999999987644456899999999998865 78999998 9999
Q ss_pred HHHHHHHHhcC
Q 003948 767 ISATVLSLLGR 777 (784)
Q Consensus 767 I~~~i~~ll~~ 777 (784)
|+++|++++++
T Consensus 315 I~~~i~~~~~~ 325 (327)
T PRK09212 315 IIEAVKKVCYR 325 (327)
T ss_pred HHHHHHHHHhh
Confidence 99999999854
No 25
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=1.7e-55 Score=483.95 Aligned_cols=309 Identities=24% Similarity=0.335 Sum_probs=269.5
Q ss_pred hhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCC----hhhhHHhC-CCCeeeccccHHHHHHHHHHHHhcCCeeEEEe-
Q 003948 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI- 537 (784)
Q Consensus 464 ~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~g----l~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~t- 537 (784)
..+++++|+++|.+++++|++++++++|++.+.+ .++|.++| |+||||+||+||+|+|+|+|+|+.|++||+++
T Consensus 26 ~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~ 105 (356)
T PLN02683 26 EMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFM 105 (356)
T ss_pred ccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4689999999999999999999999999976555 46777777 99999999999999999999999999999998
Q ss_pred cHhHHHHHHHHHHHHhhcCC--------CCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHH
Q 003948 538 YSSFLQRGYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (784)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~~~--------lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~ 609 (784)
++.|++|+||||++++|+++ +||++++.+++..| +|+|||+.+ +++||++|||+|++|+|+.|++.++++
T Consensus 106 ~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~~ 183 (356)
T PLN02683 106 TFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAG-VGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLKA 183 (356)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCC-CCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 47789999999999999888 99999998744355 599999887 599999999999999999999999999
Q ss_pred HHHhCCCCeEEEcCCCCCcc-ccCCCC--CCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeec
Q 003948 610 AAVIDDRPSCFRFPRGNGIG-AVLPPN--NKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADA 686 (784)
Q Consensus 610 A~~~~~~Pv~irl~r~~~~~-~~~p~~--~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~ 686 (784)
|++ .++|++||+++..... .+.... ..++.+++|+++++++|+|++||++|++++.|++|++.|+++||+++|||+
T Consensus 184 a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~ 262 (356)
T PLN02683 184 AIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVINL 262 (356)
T ss_pred HHh-CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 986 6799999974332110 001110 113567899999999999999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCC-CH
Q 003948 687 RFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL-SS 764 (784)
Q Consensus 687 ~slkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl-~~ 764 (784)
+|+||||++++.++++++++|||+|||. .||||++|++++.++++...+.+++++|++|.+++ ....+|++++ ++
T Consensus 263 ~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p---~~~~le~~~~p~~ 339 (356)
T PLN02683 263 RSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMP---YAANLERLALPQV 339 (356)
T ss_pred CCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCC---ccHHHHHhhCCCH
Confidence 9999999999999999999999999998 69999999999999875323568999999998654 4667888888 99
Q ss_pred HHHHHHHHHHhcCC
Q 003948 765 RHISATVLSLLGRP 778 (784)
Q Consensus 765 ~~I~~~i~~ll~~~ 778 (784)
++|++++++++.++
T Consensus 340 ~~i~~a~~~~~~~~ 353 (356)
T PLN02683 340 EDIVRAAKRACYRS 353 (356)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999654
No 26
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=2.5e-54 Score=487.25 Aligned_cols=302 Identities=22% Similarity=0.300 Sum_probs=272.3
Q ss_pred chhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCC----hhhhHHhC-CCCeeeccccHHHHHHHHHHHHhcCCeeEEEe
Q 003948 463 PTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI 537 (784)
Q Consensus 463 ~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~g----l~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~t 537 (784)
...+++++|+++|.+++++|++++++++|++.+.| .++|.++| |+||||+||+||+|+|+|+|||+.|+|||+++
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 45689999999999999999999999999987666 47899999 99999999999999999999999999999998
Q ss_pred c-HhHHHHHHHHHHHHhh--------cCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHH
Q 003948 538 Y-SSFLQRGYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (784)
Q Consensus 538 y-s~Fl~ra~dQi~~~~a--------~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~ 608 (784)
+ +.|++|++|||+|++| ++++||+|++.++|..+ .|+ ||+.+|+++||++|||+|++|+|+.|++.+++
T Consensus 220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~ 297 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLK 297 (464)
T ss_pred ehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHH
Confidence 5 6788999999999999 89999999987766544 677 88899999999999999999999999999999
Q ss_pred HHHHhCCCCeEEE-----cCCCCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEE
Q 003948 609 TAAVIDDRPSCFR-----FPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTV 683 (784)
Q Consensus 609 ~A~~~~~~Pv~ir-----l~r~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~V 683 (784)
+|++ .++|+||+ ++|.. .+|. .+++.+++||++++|+|+|++||++|.++..|++|++.|+++||+++|
T Consensus 298 ~ai~-~~~Pv~ile~~~ry~~~~----~vp~-~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~V 371 (464)
T PRK11892 298 AAIR-DPNPVIFLENEILYGQSF----DVPK-LDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEV 371 (464)
T ss_pred HHhh-CCCcEEEEechhhcCCCC----CCCC-cCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEE
Confidence 9986 68999995 54431 1232 124678899999999999999999999999999999999999999999
Q ss_pred eeccccCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCC
Q 003948 684 ADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL 762 (784)
Q Consensus 684 Id~~slkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl 762 (784)
||++|++|||.++|.++++++++|||+|||. .||||++|++++.++++...+.++++++++|.|.+ +..++++++|
T Consensus 372 Idl~tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~---~~~~le~~~l 448 (464)
T PRK11892 372 IDLRTIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP---YAANLEKLAL 448 (464)
T ss_pred EECCCCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC---cHHHHHHhcC
Confidence 9999999999999999999999999999998 69999999999999876333568999999999986 6789999998
Q ss_pred -CHHHHHHHHHHHh
Q 003948 763 -SSRHISATVLSLL 775 (784)
Q Consensus 763 -~~~~I~~~i~~ll 775 (784)
++++|++++++++
T Consensus 449 ~~~~~Iv~av~~~~ 462 (464)
T PRK11892 449 PSVAEVVEAVKAVC 462 (464)
T ss_pred CCHHHHHHHHHHHh
Confidence 9999999999875
No 27
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-54 Score=471.92 Aligned_cols=308 Identities=23% Similarity=0.358 Sum_probs=268.9
Q ss_pred CchhhHHHHHHHHHHHHHhhCCCEEEEecCCC---CCCC-hhhhHHhC-CCCeeeccccHHHHHHHHHHHHhcCCeeEEE
Q 003948 462 SPTLTYTQYFAESLIKEAETDDKIVAIHAAMG---GGTG-LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA 536 (784)
Q Consensus 462 ~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~g---gs~g-l~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~ 536 (784)
....+|+++|+++|.+++++||+++++++|++ +.++ +++|+++| |+||||+||+||+|+++|+|||++|++||++
T Consensus 32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~ 111 (355)
T PTZ00182 32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE 111 (355)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 45678999999999999999999999999997 2232 68999999 9999999999999999999999999999999
Q ss_pred e-cHhHHHHHHHHHHHHhhcC--------CCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHH
Q 003948 537 I-YSSFLQRGYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMV 607 (784)
Q Consensus 537 t-ys~Fl~ra~dQi~~~~a~~--------~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l 607 (784)
+ |++|++|++|||++++|++ ++|++++. ++|..|.+|+||++..+ ++||++|||+|++|+|+.|++.++
T Consensus 112 ~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~-~~g~~g~~G~tHs~~~e-a~lr~iPn~~V~~Psd~~e~~~~l 189 (355)
T PTZ00182 112 FMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRG-PNGAVGHGGAYHSQSFE-AYFAHVPGLKVVAPSDPEDAKGLL 189 (355)
T ss_pred echhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEe-CCCCCCCCCCcccchHH-HHHhcCCCCEEEeeCCHHHHHHHH
Confidence 8 8999999999999999986 45666553 34447899999977776 999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEcCCCCCccccCCC-CCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeec
Q 003948 608 ATAAVIDDRPSCFRFPRGNGIGAVLPP-NNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADA 686 (784)
Q Consensus 608 ~~A~~~~~~Pv~irl~r~~~~~~~~p~-~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~ 686 (784)
+++++ .++|+||++|+..... ..+. ..+.+.+++||++++++|+|++||+||+++..|++|++.|+++|++++|||+
T Consensus 190 ~~a~~-~~~P~~i~~p~~l~r~-~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~ 267 (355)
T PTZ00182 190 KAAIR-DPNPVVFFEPKLLYRE-SVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDL 267 (355)
T ss_pred HHHHh-CCCcEEEEeehHHhCC-CCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99987 6899999887653211 1111 1124677899999999999999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHH
Q 003948 687 RFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSR 765 (784)
Q Consensus 687 ~slkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~ 765 (784)
++++|||++.+.+.+++++.|||+|||. .||||++|++++.++++...+.+++++|++|.|++++.. +.+++.++++
T Consensus 268 ~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~--le~~~~~~~~ 345 (355)
T PTZ00182 268 RSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKN--LEPAYLPDKE 345 (355)
T ss_pred eeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChH--HHHHhCCCHH
Confidence 9999999999999999999999999998 699999999999998753335689999999999987644 6678899999
Q ss_pred HHHHHHHHHh
Q 003948 766 HISATVLSLL 775 (784)
Q Consensus 766 ~I~~~i~~ll 775 (784)
+|+++|++++
T Consensus 346 ~i~~~~~~~~ 355 (355)
T PTZ00182 346 KVVEAAKRVL 355 (355)
T ss_pred HHHHHHHHhC
Confidence 9999998864
No 28
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=1e-52 Score=467.84 Aligned_cols=611 Identities=22% Similarity=0.277 Sum_probs=461.0
Q ss_pred CCCCCCccCCCCcccccCCCHHHHHHHH-HHHHHHHHHHhh---c----cCCCCCCCCcHHHHHHHHhhccCCC------
Q 003948 137 KPPTPLLDTINYPIHMKNLSTEDLEQLA-AELRADIVNSVS---K----TGGHLSANLGVVELTLALHRVFNTP------ 202 (784)
Q Consensus 137 ~~~~~~l~~i~~p~~~k~~~~~~L~~la-~~iR~~ii~~v~---~----~gGH~gsslg~~el~vaL~~~~~~p------ 202 (784)
...||+++||.+-...+.....+|+... ..+|+.++.||- + .|||++|+-|++.|+-++|..|-++
T Consensus 54 ~~~t~yintip~~~e~~~pgd~~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~g 133 (887)
T COG2609 54 GTTTDYINTIPTEDEPEYPGDLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDG 133 (887)
T ss_pred cCCCCCcccccccccccCCCcHHHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCC
Confidence 4788999999998888888888888764 677999998883 2 5899999999999998887544333
Q ss_pred CcEEEeCCCchH---HHHHHHhCc--hHHhHHHHhcC---CCCCCCCCCC-CcccccCCcccchhHHHHHHHHHHHHHhC
Q 003948 203 DDKIIWDVGHQA---YVHKILTGR--RSRMNTMRKTS---GLAGFPKREE-SVHDAFGAGHSSTSISAGLGMAVARDILG 273 (784)
Q Consensus 203 ~D~~i~s~GH~~---y~~~~l~G~--~~~l~~~r~~g---gl~g~~~~~e-~~~~~~g~G~~G~~ls~AvG~AlA~~~~g 273 (784)
.|++.+ +||.+ |+...|.|| .+.|.+|||.. |+++||++.. ++...|.++++|-|.-.|+-.|.-.|++.
T Consensus 134 gDlV~~-qgHaSPg~yArafLeGRlseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~ 212 (887)
T COG2609 134 GDLVFF-QGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLE 212 (887)
T ss_pred CceEEE-ecCCCchHHHHHHHhccccHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHH
Confidence 498888 89999 888999999 68899999975 5999999864 66778999999999999999999888764
Q ss_pred -------CCCeEEEEEcCCcccchhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhh
Q 003948 274 -------KNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTN 345 (784)
Q Consensus 274 -------~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~ 345 (784)
++.+||||+|||||.|+...+|+..|++.+ +|++||||+|.| ++ ||++...+.+-+.|+.+
T Consensus 213 ~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQ-rL-----DgpVrgngkiiqelE~~----- 281 (887)
T COG2609 213 ARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQ-RL-----DGPVRGNGKIIQELEGI----- 281 (887)
T ss_pred hcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchh-hc-----CCcccCCchhHHHHHHH-----
Confidence 478999999999999999999999999988 999999999997 44 88888888888888776
Q ss_pred HHHHHHHHHHhhhhc-CCchHHHHHH---------H---------------HHHhhhcc-CCCc--hhhhhhcC---CeE
Q 003948 346 FRKLREAAKSITKQI-GGQTHEVAAK---------V---------------DEYARGLI-SASG--STFFEELG---LYY 394 (784)
Q Consensus 346 ~~~lr~~~~~~~~~~-g~~~~~~~~k---------~---------------~~~~r~~~-~~~~--~~lfea~G---~~~ 394 (784)
+|.++|+++|.+ |..+.++.+| + .+|.|..+ ...+ ..|.+.+- ++.
T Consensus 282 ---FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~ 358 (887)
T COG2609 282 ---FRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWA 358 (887)
T ss_pred ---hccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHH
Confidence 344556665543 4444333322 2 23333322 2212 12233321 111
Q ss_pred EeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCcccccccc----------------ccccc
Q 003948 395 IGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPK----------------TGKQF 458 (784)
Q Consensus 395 i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd~~----------------~g~~~ 458 (784)
. ...|||++.|.+|+++|.+. .++|++|.++|+||+|.+.+-...+..|.+.+.+++ .++.+
T Consensus 359 L-~rGGHD~~ki~aA~~~A~~~-kg~PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~l 436 (887)
T COG2609 359 L-NRGGHDPEKVYAAFKKAQEH-KGRPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEEL 436 (887)
T ss_pred H-hcCCCCHHHHHHHHHHHhcC-CCCceEEEEeeeccccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcC
Confidence 1 24699999999999999985 469999999999999997543333556776532211 00000
Q ss_pred ---------------------------------------C----------CCCchhhHHHHHHHHHHHHHhhC---CCEE
Q 003948 459 ---------------------------------------K----------TKSPTLTYTQYFAESLIKEAETD---DKIV 486 (784)
Q Consensus 459 ---------------------------------------~----------~~~~~~s~~~af~~aL~~l~~~d---~~iv 486 (784)
+ ...+..+.+.+|.+.|.++++++ ++||
T Consensus 437 py~~~g~~s~E~~yl~~rr~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riV 516 (887)
T COG2609 437 PYYHFGEDSPEYKYLHARRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIV 516 (887)
T ss_pred CcCCCCCCcHHHHHHHHHHHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccc
Confidence 0 01124788999999999999954 5799
Q ss_pred EEecCCCCCCChhhhHHh-------------------------CCCCeeeccccHHHHHH--HHHHHHhc--C--CeeEE
Q 003948 487 AIHAAMGGGTGLNYFQKR-------------------------FPDRCFDVGIAEQHAVT--FAAGLASE--G--VKPFC 535 (784)
Q Consensus 487 ~i~aD~ggs~gl~~f~~~-------------------------~p~R~~d~GIaE~~~vg--~AaGlA~~--G--~~P~~ 535 (784)
.|.+|...++|+++|-.+ -.+++++.||+|.++++ +|+|.++. | +.||.
T Consensus 517 piipDearTfgmeg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfy 596 (887)
T COG2609 517 PIIPDEARTFGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFY 596 (887)
T ss_pred cccCchhhhccchhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeee
Confidence 999999999998765321 14799999999999998 57887774 5 78999
Q ss_pred EecHhH-HHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHH
Q 003948 536 AIYSSF-LQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV 612 (784)
Q Consensus 536 ~tys~F-l~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~ 612 (784)
..|++| +||..|.+ +.+|.|...-.+++..+|. .-..|.+|++....-+-..+||++.|.|+.+.|+.-+++.+++
T Consensus 597 i~YsmFgfqRigD~~-waA~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~ 675 (887)
T COG2609 597 IYYSMFGFQRIGDLL-WAAGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLR 675 (887)
T ss_pred eeechhhhhhHHHHH-HHHHhhhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHH
Confidence 999999 89999986 7899999995555544543 2345888988777666678999999999999999999999999
Q ss_pred hCCCC------eEEEcCCCCCccccCCCCCCCCCccccce-eEeee-----CCcEEEEEechhHHHHHHHHHHHhc-CCC
Q 003948 613 IDDRP------SCFRFPRGNGIGAVLPPNNKGTPLEIGKG-RILME-----GDRVAILGYGSIVQQCVLAANMLKS-QDI 679 (784)
Q Consensus 613 ~~~~P------v~irl~r~~~~~~~~p~~~~~~~~~igk~-~vlre-----G~dvtIva~Gs~v~~aleAae~L~~-~GI 679 (784)
+..++ .||++...+.+ .|+.+++..-.+-|+ |.++. +.+|.|+++|..++++++|+++|++ .|+
T Consensus 676 rmy~~~qe~v~yYlt~~ne~~~---qPamp~gae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv 752 (887)
T COG2609 676 RMYGEGQENVFYYITLSNENYP---QPAMPEGAEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGV 752 (887)
T ss_pred HHhccCcCCcEEEEEeccCcCC---CCCCCCcchhhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhcccc
Confidence 65444 45555554433 333222333334454 66653 3589999999999999999999987 599
Q ss_pred cEEEeeccccCCCcHH-------------------HHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEE
Q 003948 680 SVTVADARFCKPLDTD-------------------LIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRS 740 (784)
Q Consensus 680 ~v~VId~~slkPlD~e-------------------~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~ 740 (784)
.+.|++++|...|-++ ++.+.++....+|++-+... .+.+.|.+++ |.+++.
T Consensus 753 ~adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v~yv~~~L~~~~p~Va~tDy~~-~~a~qir~~v--------p~~y~v 823 (887)
T COG2609 753 EADLWSVTSFDELARDGQAAERWNLLHPTETPRVPYVAQVLNADGPVVAVTDYMK-LFAEQIRAVV--------PQRYRV 823 (887)
T ss_pred ccCeeecccHHHHhcchHHHHHHHhcCCCCCCCchHHHHHhccCCCeEEechhhH-hHHHHHhccc--------CCeeEE
Confidence 9999999998776554 44555554567888877652 2333333322 467788
Q ss_pred eecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHhcCC
Q 003948 741 MVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP 778 (784)
Q Consensus 741 lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll~~~ 778 (784)
+|. |.|+.|+++++++++|++|+..|+.++++.+.+.
T Consensus 824 LGt-dgFGrSdsr~~Lr~~fevDa~~vv~Aal~~La~~ 860 (887)
T COG2609 824 LGT-DGFGRSDSRENLRRFFEVDAYYVVVAALSALAKR 860 (887)
T ss_pred ecc-CCCCccCcHHHHHHHhccchHHHHHHHHHHHhcC
Confidence 886 9999999999999999999999999999888544
No 29
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-50 Score=420.16 Aligned_cols=305 Identities=24% Similarity=0.397 Sum_probs=270.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCEEEEecCCC---CCCCh-hhhHHhCC-CCeeeccccHHHHHHHHHHHHhcCCeeEEEe-c
Q 003948 465 LTYTQYFAESLIKEAETDDKIVAIHAAMG---GGTGL-NYFQKRFP-DRCFDVGIAEQHAVTFAAGLASEGVKPFCAI-Y 538 (784)
Q Consensus 465 ~s~~~af~~aL~~l~~~d~~iv~i~aD~g---gs~gl-~~f~~~~p-~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~t-y 538 (784)
.++++|++++|.++|++|++|+++++|++ |.++. .+++++|+ +|++|++|+|.+++|+|.|+|+.|+||++++ |
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 47899999999999999999999999986 33343 78999996 5999999999999999999999999999998 9
Q ss_pred HhHHHHHHHHHHHHhhc--------CCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHH
Q 003948 539 SSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (784)
Q Consensus 539 s~Fl~ra~dQi~~~~a~--------~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A 610 (784)
.+|+..|+|||+|++++ ..+|+++++..+|..+ .|.+|++..+ +++.++||++|+.|++|.|++++++.|
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~-~~~~HSqs~e-a~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIG-GGAQHSQSLE-ALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCC-chhhccCCHH-HHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999985 4789999986655343 5788999887 899999999999999999999999999
Q ss_pred HHhCCCCeEEEcCCCCC--ccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccc
Q 003948 611 AVIDDRPSCFRFPRGNG--IGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARF 688 (784)
Q Consensus 611 ~~~~~~Pv~irl~r~~~--~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~s 688 (784)
++ +++||+|++++... ...++|+ .+|.+++||+.+.|||+|+|||+||.|++.+++||++|+++||+++|||+||
T Consensus 160 Ir-d~dPViflE~k~lY~~~~~eVP~--~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRT 236 (324)
T COG0022 160 IR-DPDPVIFLEHKRLYRSFKGEVPE--EDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRT 236 (324)
T ss_pred hc-CCCCEEEEecHHHhcccccCCCC--CCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 86 89999999987542 2245664 4789999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHH
Q 003948 689 CKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 767 (784)
Q Consensus 689 lkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I 767 (784)
++|||.++|.+++++++++|+|||.. .+|+|++|++.+.++.|.+...++.|++.+|.+.++.. .+-+.+-.+++.|
T Consensus 237 l~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~--~lE~~~lp~~~~I 314 (324)
T COG0022 237 LSPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSA--ALEKAYLPNPERI 314 (324)
T ss_pred cCccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcch--hHHhhhCCCHHHH
Confidence 99999999999999999999999886 79999999999999988777889999999999886432 2333456699999
Q ss_pred HHHHHHHhc
Q 003948 768 SATVLSLLG 776 (784)
Q Consensus 768 ~~~i~~ll~ 776 (784)
+++++++++
T Consensus 315 ~~av~~v~~ 323 (324)
T COG0022 315 VAAVKKVLE 323 (324)
T ss_pred HHHHHHHhh
Confidence 999999874
No 30
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=6.7e-47 Score=442.36 Aligned_cols=521 Identities=17% Similarity=0.185 Sum_probs=385.7
Q ss_pred CCCCCCCCcHHHHHHHHhhccCC-CCc-EEEeCCCchH---HHHHHHhC-----ch----HH--hH-HHHhcC---CCCC
Q 003948 179 GGHLSANLGVVELTLALHRVFNT-PDD-KIIWDVGHQA---YVHKILTG-----RR----SR--MN-TMRKTS---GLAG 238 (784)
Q Consensus 179 gGH~gsslg~~el~vaL~~~~~~-p~D-~~i~s~GH~~---y~~~~l~G-----~~----~~--l~-~~r~~g---gl~g 238 (784)
-||+|++-|...++++|.++.+. ..| .+|++.||.+ |+..+|.| +. ++ |. .|||++ |++|
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~pgg~~s 128 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFPGGIPS 128 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCCCCcCC
Confidence 59999999999999999876543 234 4689999999 88899999 21 23 76 578874 6899
Q ss_pred CCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchh---hHHHHHHHhhcC-CCEEEEEECCC
Q 003948 239 FPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQ---AYEAMNNAGFLD-ANLIVVLNDNK 314 (784)
Q Consensus 239 ~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~---~~EAln~A~~~~-~nlivIv~dN~ 314 (784)
||.+ +.|+....+|.+|++++.|+|+|+. +++.+|+|++||||.++|. .|++.++++..+ .|++.|+++|+
T Consensus 129 H~~~-~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng 203 (785)
T PRK05261 129 HAAP-ETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNG 203 (785)
T ss_pred CCCC-CCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecC
Confidence 9985 6889889999999999999999964 4588999999999999998 599999888765 99999999999
Q ss_pred C-CCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCe
Q 003948 315 Q-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY 393 (784)
Q Consensus 315 ~-~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~ 393 (784)
+ ++.||.... . ..+++.++ |++|||.
T Consensus 204 ~~Is~pt~~~~--------~-----------------------------~~e~l~~r----------------f~g~Gw~ 230 (785)
T PRK05261 204 YKIANPTILAR--------I-----------------------------SDEELEAL----------------FRGYGYE 230 (785)
T ss_pred CcCCCCccccc--------c-----------------------------CcHhHHHH----------------HHHCCCe
Confidence 5 443332110 0 12456665 9999999
Q ss_pred EEeecCCCCHHHHHHH--------HH-------HhhcC-CCCCcE--EEEEEecCCCCCCh------hhhcccccCcccc
Q 003948 394 YIGPVDGHNVEDLVTI--------FQ-------RVKEM-PAPGPV--LIHVVTEKGKGYPP------AEAAADRMHGVVK 449 (784)
Q Consensus 394 ~i~~vDGhd~~~l~~a--------l~-------~ak~~-~~~~P~--lI~v~T~kG~G~~~------ae~~~~~~Hg~~~ 449 (784)
.+ .|||||++++.++ ++ +||.. ...+|+ +|+++|.||+|-|. .|+. .+.|+++.
T Consensus 231 ~i-~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~eGs-~raHqvPL 308 (785)
T PRK05261 231 PY-FVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIEGS-WRAHQVPL 308 (785)
T ss_pred eE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccCCC-chhhcCCC
Confidence 87 7899999887776 44 34431 115899 99999999999652 4543 46788762
Q ss_pred -------------------------cccc------------ccc-------------ccC----CC-------------C
Q 003948 450 -------------------------FDPK------------TGK-------------QFK----TK-------------S 462 (784)
Q Consensus 450 -------------------------fd~~------------~g~-------------~~~----~~-------------~ 462 (784)
|+.. +|+ ..+ +. .
T Consensus 309 ~~~~~~~~~~~~L~~wl~sy~p~elF~~~g~l~~~~~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~ 388 (785)
T PRK05261 309 ANVRDNPEHLDLLEDWLRSYRPEELFDEDGRLKPELAALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGAV 388 (785)
T ss_pred CCcccCHHHHHHHHHHhhcCChhhhcCCCCchhHHHHHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCcc
Confidence 2210 000 000 00 0
Q ss_pred chhhHHHHHHHHHHHHHhhCCC-EEEEecCCCCCCChhhhHH-----------------hCCCCeeeccccHHHHHHHHH
Q 003948 463 PTLTYTQYFAESLIKEAETDDK-IVAIHAAMGGGTGLNYFQK-----------------RFPDRCFDVGIAEQHAVTFAA 524 (784)
Q Consensus 463 ~~~s~~~af~~aL~~l~~~d~~-iv~i~aD~ggs~gl~~f~~-----------------~~p~R~~d~GIaE~~~vg~Aa 524 (784)
....++. +++.|.++++.+|+ ++++++|+..|+.++...+ ...+|+++ |++|++|.|++.
T Consensus 389 ~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~ 466 (785)
T PRK05261 389 MAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLE 466 (785)
T ss_pred ccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHH
Confidence 0123444 89999999999998 8999999998888743222 22389999 999999999999
Q ss_pred HHHhcCCeeEEEecHhHH---HHHHHHHHHHhh----------cCCCCEEEEeeCCCC-CCCCCCCcCc---hhhHhHhc
Q 003948 525 GLASEGVKPFCAIYSSFL---QRGYDQVVHDVD----------LQKLPVRFAMDRAGL-VGADGPTHCG---AFDVTFMS 587 (784)
Q Consensus 525 GlA~~G~~P~~~tys~Fl---~ra~dQi~~~~a----------~~~lpV~~v~~~~G~-~G~dG~THq~---~~dla~lr 587 (784)
|+++.|.++++++|..|+ ..++.|+..-.- +..++ ++.++... .|+||+|||+ ++.++-++
T Consensus 467 Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn--~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r 544 (785)
T PRK05261 467 GYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN--YLLTSHVWRQDHNGFSHQDPGFIDHVANKK 544 (785)
T ss_pred HHHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccee--EEeecceeecCCCCCCCCCchHHHHHHhcC
Confidence 999999999999999998 788888621111 22333 55566655 7999999999 99999998
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEcCCCCCccccCCCCCCCCCccccc-eeEee--e-----CCcEEEEE
Q 003948 588 CLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGK-GRILM--E-----GDRVAILG 659 (784)
Q Consensus 588 ~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk-~~vlr--e-----G~dvtIva 659 (784)
. |++.||.|+|++|+..+++.|++..++|++|.++|++++... . .......+.+ ++++. + +.|++|+|
T Consensus 545 ~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~~~--~-~~~a~~~~~kGayi~~~a~~~~~~~pDvvL~a 620 (785)
T PRK05261 545 P-DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQWL--S-MDEARKHCTKGLGIWDWASNDDGEEPDVVLAC 620 (785)
T ss_pred C-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCcccC--C-hHHHHHhccCceEEEEeccCCCCCCCCEEEEE
Confidence 8 999999999999999999999998899999999999865321 1 0000011223 35665 2 35999999
Q ss_pred echhHHH-HHHHHHHHhcC--CCcEEEeeccccC--------C--CcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHH
Q 003948 660 YGSIVQQ-CVLAANMLKSQ--DISVTVADARFCK--------P--LDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFL 726 (784)
Q Consensus 660 ~Gs~v~~-aleAae~L~~~--GI~v~VId~~slk--------P--lD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l 726 (784)
+|+++.. |++|+++|+++ ||+++||++.-+- | |+.+.+.++....+.||+. ..|+.+.|...+
T Consensus 621 tGsev~leAlaAa~~L~~~~pgikvRVVSv~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~----~hgyp~~i~~l~ 696 (785)
T PRK05261 621 AGDVPTLETLAAADLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFA----FHGYPWLIHRLT 696 (785)
T ss_pred eCcHhhHHHHHHHHHHHhhCCCCCEEEEEechhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEE----eCCCHHHHHHHh
Confidence 9999988 99999999999 9999999995221 1 4446777777666666543 345666666655
Q ss_pred HhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 003948 727 TLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 775 (784)
Q Consensus 727 ~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll 775 (784)
-.+. ...++...|. .+-+..-++.+++-.+++|--+++..+.+.+
T Consensus 697 ~~r~---~~~~~~v~gy-~e~g~tttp~dm~~~N~~~r~~l~~~a~~~~ 741 (785)
T PRK05261 697 YRRT---NHHNFHVRGY-KEEGTTTTPFDMVVLNELDRFHLAIDAIDRV 741 (785)
T ss_pred ccCC---CCCccEEEEE-ecCCCCCCHHHHHHHhCCCHHHHHHHHHHhh
Confidence 4431 1235555564 3334456789999999999999998877654
No 31
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-46 Score=372.32 Aligned_cols=222 Identities=32% Similarity=0.544 Sum_probs=199.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCcHHHHHHHHhhc-cC----CC----CcEEEeCCCchH---HHHHHHh
Q 003948 155 LSTEDLEQLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHRV-FN----TP----DDKIIWDVGHQA---YVHKILT 221 (784)
Q Consensus 155 ~~~~~L~~la~~iR~~ii~~v~-~~gGH~gsslg~~el~vaL~~~-~~----~p----~D~~i~s~GH~~---y~~~~l~ 221 (784)
++..+|.++|.+||+.+++|+. ...||+|+|||++||+++||+. ++ +| |||||+||||++ |+.++..
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHc
Confidence 5788999999999999999997 5778999999999999999864 32 23 899999999998 8888999
Q ss_pred Cc--hHHhHHHHhcCC-CCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHH
Q 003948 222 GR--RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNN 298 (784)
Q Consensus 222 G~--~~~l~~~r~~gg-l~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~ 298 (784)
|. ++++.+|++.++ |+|||.+..+|++...+|++|++||.|+|||++.|+++.+.+||+++||||++||++|||++.
T Consensus 85 G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~ 164 (243)
T COG3959 85 GYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMT 164 (243)
T ss_pred CCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHH
Confidence 97 789999999998 899999988999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhh
Q 003948 299 AGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARG 377 (784)
Q Consensus 299 A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~ 377 (784)
|++++ +|||.|+|.|+.+ .||.++++.. .+++.+|
T Consensus 165 Aah~~L~NLiaivD~N~~Q------ldG~t~~i~~-------------------------------~~pL~~k------- 200 (243)
T COG3959 165 AAHYKLDNLIAIVDRNKLQ------LDGETEEIMP-------------------------------KEPLADK------- 200 (243)
T ss_pred HHHhccCcEEEEEecCCcc------cCCchhhccC-------------------------------cchhHHH-------
Confidence 99988 8999999999952 2676665543 2677777
Q ss_pred ccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCC
Q 003948 378 LISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 378 ~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG 431 (784)
||+|||+++ .|||||+++|.+++++++.. .++|++|+++|+||
T Consensus 201 ---------~eAFGw~V~-evdG~d~~~i~~a~~~~~~~-~~rP~~IIa~Tvkg 243 (243)
T COG3959 201 ---------WEAFGWEVI-EVDGHDIEEIVEALEKAKGS-KGRPTVIIAKTVKG 243 (243)
T ss_pred ---------HHhcCceEE-EEcCcCHHHHHHHHHhhhcc-CCCCeEEEEecccC
Confidence 999999987 89999999999999999874 34999999999987
No 32
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.2e-42 Score=351.56 Aligned_cols=306 Identities=23% Similarity=0.375 Sum_probs=261.9
Q ss_pred chhhHHHHHHHHHHHHHhhCCCEEEEecCCC---CCCCh-hhhHHhC-CCCeeeccccHHHHHHHHHHHHhcCCeeEEEe
Q 003948 463 PTLTYTQYFAESLIKEAETDDKIVAIHAAMG---GGTGL-NYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI 537 (784)
Q Consensus 463 ~~~s~~~af~~aL~~l~~~d~~iv~i~aD~g---gs~gl-~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~t 537 (784)
+.++.++|+++++.++|++|++|++++++++ |+.++ +++.++| +.|++|++|+|.+..|+|.|+|+.|+||+|+.
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~ef 112 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEF 112 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhh
Confidence 3578999999999999999999999999986 44444 6788888 57999999999999999999999999999996
Q ss_pred -cHhHHHHHHHHHHHHhhc--------CCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHH
Q 003948 538 -YSSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (784)
Q Consensus 538 -ys~Fl~ra~dQi~~~~a~--------~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~ 608 (784)
-..|+..|+|||+|.+++ +++|++|++.. |....-|.+|++.+. +|+.++||++|++|.+++|++++++
T Consensus 113 MtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPn-G~~~gv~AqHSQ~f~-~wy~siPGlkvvapysaedakGLlK 190 (359)
T KOG0524|consen 113 MTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPN-GAAAGVAAQHSQDFA-SWYGSIPGLKVVAPYSAEDAKGLLK 190 (359)
T ss_pred hcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCC-CcccchhhhhhhhhH-HHhccCCCceEeccCChhhhhhHHH
Confidence 678999999999999874 57888888643 322335789999987 7999999999999999999999999
Q ss_pred HHHHhCCCCeEEEcCCCCCccc--cCCCC--CCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEe
Q 003948 609 TAAVIDDRPSCFRFPRGNGIGA--VLPPN--NKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVA 684 (784)
Q Consensus 609 ~A~~~~~~Pv~irl~r~~~~~~--~~p~~--~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VI 684 (784)
.|++ +++|+++++..- ++.. ++|+. .+++..++||+.+-|+|+||+||++.-++..|++||+.|.++|++++||
T Consensus 191 aAIR-d~NPVV~lEnel-LYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVI 268 (359)
T KOG0524|consen 191 AAIR-DENPVVFLENEL-LYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVI 268 (359)
T ss_pred Hhcc-CCCCeEEEechh-hcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeE
Confidence 9975 899999987542 3332 23321 2347789999999999999999999999999999999999999999999
Q ss_pred eccccCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcC-C
Q 003948 685 DARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESG-L 762 (784)
Q Consensus 685 d~~slkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~g-l 762 (784)
|+|+|+|||.++|...++++.++++||++. .+|+|+++++.+.|+.+-..+.++.|+...|.+-++.. -+|.+- .
T Consensus 269 nlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~---~lE~~a~p 345 (359)
T KOG0524|consen 269 NLRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAK---TLEDWAVP 345 (359)
T ss_pred eeeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCccch---hhHhhcCC
Confidence 999999999999999999999999999998 69999999999999755444678889999998887643 244444 5
Q ss_pred CHHHHHHHHHHHh
Q 003948 763 SSRHISATVLSLL 775 (784)
Q Consensus 763 ~~~~I~~~i~~ll 775 (784)
++++|+.++++++
T Consensus 346 ~~~~iV~Avk~~~ 358 (359)
T KOG0524|consen 346 QPADIVTAVKKLC 358 (359)
T ss_pred CHHHHHHHHHHhh
Confidence 8999999999875
No 33
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=6e-43 Score=355.29 Aligned_cols=195 Identities=66% Similarity=1.088 Sum_probs=177.1
Q ss_pred CCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchh
Q 003948 179 GGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTS 258 (784)
Q Consensus 179 gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ 258 (784)
+||+|++||++|++++||+.|+.||||||+|+||++|++++++|++++|.+||+.++++|||++.+++++.+++|++|++
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~~~~~rDr~ils~gH~~~~~~~~~g~~~~l~~~~~~~~~~g~p~~~~~~~~~~~~G~lG~g 80 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYVFDSPKDKIIWDVGHQAYPHKILTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHSSTS 80 (195)
T ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCeEEEecccHHHHHHHHHCCHHHHhhhhcCCCCCCCCcCCCCCCceECCCchhhh
Confidence 69999999999999999998988999999999999999999999989999999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHH
Q 003948 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALS 338 (784)
Q Consensus 259 ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~ 338 (784)
+|+|+|+|+|.|+++++++|||++|||+++||++|||+++|+.+++|+++|++||++ ++. +++.
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~-~~~-----~~~~---------- 144 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEM-SIS-----PNVG---------- 144 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCc-ccC-----CCCC----------
Confidence 999999999999999999999999999999999999999999999999999999995 221 1110
Q ss_pred HhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCC
Q 003948 339 KLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPA 418 (784)
Q Consensus 339 ~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~ 418 (784)
+.. .+|+++||.++.++||||++++.++++++++ .
T Consensus 145 ---------------------------~~~----------------~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~--~ 179 (195)
T cd02007 145 ---------------------------TPG----------------NLFEELGFRYIGPVDGHNIEALIKVLKEVKD--L 179 (195)
T ss_pred ---------------------------CHH----------------HHHHhcCCCccceECCCCHHHHHHHHHHHHh--C
Confidence 111 2288999998766899999999999999987 5
Q ss_pred CCcEEEEEEecCCCCC
Q 003948 419 PGPVLIHVVTEKGKGY 434 (784)
Q Consensus 419 ~~P~lI~v~T~kG~G~ 434 (784)
++|++|+++|.||+||
T Consensus 180 ~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 180 KGPVLLHVVTKKGKGY 195 (195)
T ss_pred CCCEEEEEEEecccCc
Confidence 7999999999999997
No 34
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=8.8e-44 Score=386.50 Aligned_cols=232 Identities=31% Similarity=0.514 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHhh-ccCCCCCCCCcHHHHHHHHhh-ccC----CC----CcEEEeCCCchH---HHHHHHhCc---h
Q 003948 161 EQLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHR-VFN----TP----DDKIIWDVGHQA---YVHKILTGR---R 224 (784)
Q Consensus 161 ~~la~~iR~~ii~~v~-~~gGH~gsslg~~el~vaL~~-~~~----~p----~D~~i~s~GH~~---y~~~~l~G~---~ 224 (784)
+.+|++||.++++|+. .++||+|++||++||+++||. +++ +| |||||+|+||.+ |+.+.+.|+ .
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~~~ 81 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGYDLSE 81 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTSSS-H
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcCCCCH
Confidence 4679999999999997 588999999999999999986 332 33 799999999999 899999997 4
Q ss_pred HHhHHHHhcCC-CCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhC----------CCCeEEEEEcCCcccchhhH
Q 003948 225 SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQAY 293 (784)
Q Consensus 225 ~~l~~~r~~gg-l~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g----------~~~~Vv~viGDGal~eG~~~ 293 (784)
++|.+||+.++ ++|||+....+++.+.+|++|+|+|.|+|||+|.|+++ .+++|||++||||++||++|
T Consensus 82 ~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~ 161 (332)
T PF00456_consen 82 EDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVW 161 (332)
T ss_dssp HHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHH
T ss_pred HHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhH
Confidence 78999999998 79999987789999999999999999999999999764 26899999999999999999
Q ss_pred HHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHH
Q 003948 294 EAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD 372 (784)
Q Consensus 294 EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~ 372 (784)
||+.+|++++ +|||+|+|+|+. ++ ||.+..+. .+++.+|
T Consensus 162 EA~~~A~~~~L~nLi~i~D~N~~-q~-----dg~~~~~~--------------------------------~~~~~~k-- 201 (332)
T PF00456_consen 162 EAASLAGHYKLDNLIVIYDSNGI-QI-----DGPTDIVF--------------------------------SEDIAKK-- 201 (332)
T ss_dssp HHHHHHHHTT-TTEEEEEEEESE-ET-----TEEGGGTH--------------------------------HSHHHHH--
T ss_pred HHHHHHHHhCCCCEEEEEecCCc-cc-----CCCccccc--------------------------------chHHHHH--
Confidence 9999999998 889999999995 32 44432110 1455665
Q ss_pred HHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc
Q 003948 373 EYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (784)
Q Consensus 373 ~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~ 448 (784)
|++|||+++.+.||||+++|.+|+++++.. .++|++|+++|+||+|++.+|+. .++||.+
T Consensus 202 --------------~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG~G~~~~e~~-~~~Hg~~ 261 (332)
T PF00456_consen 202 --------------FEAFGWNVIEVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKGKGVPFMEGT-AKWHGSP 261 (332)
T ss_dssp --------------HHHTT-EEEEEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TTTTSTTTTTS-GGGTSS-
T ss_pred --------------HHHhhhhhcccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEecCchhhccc-chhhccC
Confidence 999999998444999999999999999874 48999999999999999998875 6799865
No 35
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.8e-40 Score=396.52 Aligned_cols=512 Identities=18% Similarity=0.206 Sum_probs=352.4
Q ss_pred CCCHHHHHHHHH-HHHHHHHH--Hhhc-cCCCCCCCCcHHHHHHHHhhccC-----CCCcEEEeCCCchHHHHHHHh--C
Q 003948 154 NLSTEDLEQLAA-ELRADIVN--SVSK-TGGHLSANLGVVELTLALHRVFN-----TPDDKIIWDVGHQAYVHKILT--G 222 (784)
Q Consensus 154 ~~~~~~L~~la~-~iR~~ii~--~v~~-~gGH~gsslg~~el~vaL~~~~~-----~p~D~~i~s~GH~~y~~~~l~--G 222 (784)
.++.+++.++-+ -+|.+.++ +..+ .++-..+.-|+.-+.++|-...+ .++| +|++..|+...+.+.. |
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D-~vigmaHRgrlnvLa~v~G 263 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKE-IVIGMAHRGRLNVLVNVLG 263 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCCCC-EEEecCcCchHHHHHHhcC
Confidence 566666555432 23433333 2222 44555578898888887755332 3566 4554469998776664 6
Q ss_pred c--hHHhHHHHhc--------CC-CC---CCCCCC----CCccc--ccCCcccchhHHHHHHHHHHHHHhCCC------C
Q 003948 223 R--RSRMNTMRKT--------SG-LA---GFPKRE----ESVHD--AFGAGHSSTSISAGLGMAVARDILGKN------N 276 (784)
Q Consensus 223 ~--~~~l~~~r~~--------gg-l~---g~~~~~----e~~~~--~~g~G~~G~~ls~AvG~AlA~~~~g~~------~ 276 (784)
. ++.|.+|.-. +| .. |++... .+-|. ..--+|++...|.|+|+|+|.++++.+ .
T Consensus 264 ~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~~~ 343 (924)
T PRK09404 264 KPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKV 343 (924)
T ss_pred CCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCcccccce
Confidence 5 4556666321 11 01 222100 01111 112378999999999999999999877 7
Q ss_pred eEEEEEcCCcc-cchhhHHHHHHHhhcCCC---EEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHH
Q 003948 277 NVISVIGDGAM-TAGQAYEAMNNAGFLDAN---LIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREA 352 (784)
Q Consensus 277 ~Vv~viGDGal-~eG~~~EAln~A~~~~~n---livIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~ 352 (784)
.++|++|||++ .+|.+||+||+|+.|+.| +|+||.||++ ++.|...+...
T Consensus 344 v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~-g~tT~~~~~~s------------------------- 397 (924)
T PRK09404 344 LPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQI-GFTTSPPDDRS------------------------- 397 (924)
T ss_pred EEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCE-EEeeCHHHhcc-------------------------
Confidence 88999999998 799999999999999987 9999999985 33222111000
Q ss_pred HHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEecC
Q 003948 353 AKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVTEK 430 (784)
Q Consensus 353 ~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~--~~~~P~lI~v~T~k 430 (784)
.....+ +++++|+..+ .|||+|++++..+.+.|.+. ..++|++|++.|.+
T Consensus 398 -----------~~~~sd----------------~Ak~~giP~~-~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR 449 (924)
T PRK09404 398 -----------TPYCTD----------------VAKMVQAPIF-HVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYR 449 (924)
T ss_pred -----------chhHHH----------------HHeecCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEec
Confidence 012222 2788999876 89999999999888766542 46899999999999
Q ss_pred CCCCChhhhc----c---ccc--Cccc--c----------cc--------------------------c-----------
Q 003948 431 GKGYPPAEAA----A---DRM--HGVV--K----------FD--------------------------P----------- 452 (784)
Q Consensus 431 G~G~~~ae~~----~---~~~--Hg~~--~----------fd--------------------------~----------- 452 (784)
-+|+...... + ..| |.-+ . ++ +
T Consensus 450 ~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~~~~~~~~~~~ 529 (924)
T PRK09404 450 RHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPADWLAGDWSPY 529 (924)
T ss_pred CCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 9998532210 0 001 1100 0 00 0
Q ss_pred ---------ccccc-------------cCC--------------------CCchhhHHHHHHHHHHHHHhhCCCEEEEec
Q 003948 453 ---------KTGKQ-------------FKT--------------------KSPTLTYTQYFAESLIKEAETDDKIVAIHA 490 (784)
Q Consensus 453 ---------~~g~~-------------~~~--------------------~~~~~s~~~af~~aL~~l~~~d~~iv~i~a 490 (784)
.||-+ .++ .....+|..|...++..++++|++|++.++
T Consensus 530 ~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~Ge 609 (924)
T PRK09404 530 LGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQ 609 (924)
T ss_pred cccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEee
Confidence 00000 000 012246888899999999999999999999
Q ss_pred CCCCCC--------------C----hhhhHHhC-CCCeeeccccHHHHHHHHHHHHhcCCee--EEEe-cHhHH---HHH
Q 003948 491 AMGGGT--------------G----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKP--FCAI-YSSFL---QRG 545 (784)
Q Consensus 491 D~ggs~--------------g----l~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~P--~~~t-ys~Fl---~ra 545 (784)
|++.++ | ++++.++| +.|++|++|+|.+++|++.|+|+.|.+| +++. |.+|+ |.+
T Consensus 610 Dv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~ 689 (924)
T PRK09404 610 DSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVV 689 (924)
T ss_pred eCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHH
Confidence 997532 2 36777787 8999999999999999999999999965 9997 99997 477
Q ss_pred HHHHHHHh-hc--CCCCEEEEeeCCCCCCCCCCCcCc-hhhHhHhccC--CCcEEEecCCHHHHHHHHHHHHHhC-CCCe
Q 003948 546 YDQVVHDV-DL--QKLPVRFAMDRAGLVGADGPTHCG-AFDVTFMSCL--PNMVVMAPSDEAELMHMVATAAVID-DRPS 618 (784)
Q Consensus 546 ~dQi~~~~-a~--~~lpV~~v~~~~G~~G~dG~THq~-~~dla~lr~i--Pn~~V~~Psd~~E~~~~l~~A~~~~-~~Pv 618 (784)
+||+++.+ ++ ...++++...+++ .|. |+.|++ ..+ +++... |||+|+.|++|.+++++++.++.++ ++|+
T Consensus 690 ~Dq~i~~~~~k~~~~sglv~~~p~G~-~g~-g~~hsS~~~E-~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pv 766 (924)
T PRK09404 690 IDQFISSGEQKWGRLSGLVMLLPHGY-EGQ-GPEHSSARLE-RFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPL 766 (924)
T ss_pred HHHHHHHHHHHhcCccCeEEEecCcC-CCC-ChhhhccCHH-HHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCE
Confidence 99998876 43 2456777776653 344 555554 444 566444 7999999999999999999976556 4999
Q ss_pred EEEcCCCCCcc-------ccCCCCCCCCCccccceeEeeeCCcE--EEEEechhHHHHHHHHHHHhcCCCcEEEeecccc
Q 003948 619 CFRFPRGNGIG-------AVLPPNNKGTPLEIGKGRILMEGDRV--AILGYGSIVQQCVLAANMLKSQDISVTVADARFC 689 (784)
Q Consensus 619 ~irl~r~~~~~-------~~~p~~~~~~~~~igk~~vlreG~dv--tIva~Gs~v~~aleAae~L~~~GI~v~VId~~sl 689 (784)
+|..|+..+.. .++++ ..+...++++. .++++|| +|||||.+++.+++|++.+.. .++.|||+++|
T Consensus 767 v~~~pK~L~r~~~~~s~~~e~~~--~~f~~vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~~--~~v~ii~le~L 841 (924)
T PRK09404 767 VVMTPKSLLRHPLAVSSLEELAE--GSFQPVIGDID-ELDPKKVKRVVLCSGKVYYDLLEARRKRGI--DDVAIVRIEQL 841 (924)
T ss_pred EEeccHHHhCCCCCCCCHHHcCC--CCceeeccccc-ccCccceeEEEEEcCHHHHHHHHHHHhCCC--CCEEEEEeeee
Confidence 99998864321 11221 11223355544 5677799 799999999999999986543 49999999999
Q ss_pred CCCcHHHHHHHhccC---CeEEEEcC-CCcCCcHHHHHHHHHh
Q 003948 690 KPLDTDLIRQLANEH---EILITVEE-GSVGGFGSHVCHFLTL 728 (784)
Q Consensus 690 kPlD~e~i~~~~~~~---~~vVvvEe-~~~gG~gs~V~~~l~~ 728 (784)
.|||.+.|.+.++++ +.+|+++| ....|.+..|...+..
T Consensus 842 ~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~ 884 (924)
T PRK09404 842 YPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEE 884 (924)
T ss_pred CCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHH
Confidence 999999999999886 35555554 5578888888877754
No 36
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=1.6e-41 Score=369.48 Aligned_cols=230 Identities=23% Similarity=0.331 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHHhhc-cC------CCCCCCCcHHHHHHHHhh-ccCC-----CCcEEEeCCCchH---HHHHHHhCc-
Q 003948 161 EQLAAELRADIVNSVSK-TG------GHLSANLGVVELTLALHR-VFNT-----PDDKIIWDVGHQA---YVHKILTGR- 223 (784)
Q Consensus 161 ~~la~~iR~~ii~~v~~-~g------GH~gsslg~~el~vaL~~-~~~~-----p~D~~i~s~GH~~---y~~~~l~G~- 223 (784)
+++...||+.+++|+.+ ++ ||+|++||++||+++||+ +|+. ++|| |+|+||++ |++++++|+
T Consensus 5 ~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p~~~~RDR-vlSkGHas~~lYA~L~l~G~~ 83 (386)
T cd02017 5 RRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARGEGGGGDL-VYFQGHASPGIYARAFLEGRL 83 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCCCCCCCCE-EEeCCcccHHHHHHHHHcCCC
Confidence 34579999999999974 43 999999999999999984 5652 3899 88899999 999999998
Q ss_pred -hHHhHHHHhcCC---CCCCCCCCCCcc-cccCCcccchhHHHHHHHHHHHHH-------hCCCCeEEEEEcCCcccchh
Q 003948 224 -RSRMNTMRKTSG---LAGFPKREESVH-DAFGAGHSSTSISAGLGMAVARDI-------LGKNNNVISVIGDGAMTAGQ 291 (784)
Q Consensus 224 -~~~l~~~r~~gg---l~g~~~~~e~~~-~~~g~G~~G~~ls~AvG~AlA~~~-------~g~~~~Vv~viGDGal~eG~ 291 (784)
.++|.+|||.++ +++||++.+.++ ..+.+|++|++++.|+|||+|.|+ .+.+++|||++||||++||+
T Consensus 84 ~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~ 163 (386)
T cd02017 84 TEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPE 163 (386)
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHH
Confidence 588999999998 899999876665 778999999999999999999998 56789999999999999999
Q ss_pred hHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHH
Q 003948 292 AYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (784)
Q Consensus 292 ~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k 370 (784)
+|||+++|+.++ +|||+|+|+|++ ++ ||++..++. ..+++.+|
T Consensus 164 vwEA~~~Ag~~kL~NLivIvD~N~~-qi-----dG~t~~v~~------------------------------~~e~l~~k 207 (386)
T cd02017 164 SLGAIGLAAREKLDNLIFVVNCNLQ-RL-----DGPVRGNGK------------------------------IIQELEGI 207 (386)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCC-cc-----CCccccccc------------------------------CchhHHHH
Confidence 999999999998 899999999996 32 565554321 12577777
Q ss_pred HHHHhhhccCCCchhhhhhcCCeEEeecC---------------------------------------------------
Q 003948 371 VDEYARGLISASGSTFFEELGLYYIGPVD--------------------------------------------------- 399 (784)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~i~~vD--------------------------------------------------- 399 (784)
|++|||+++ .||
T Consensus 208 ----------------f~AfGW~vi-~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~ 270 (386)
T cd02017 208 ----------------FRGAGWNVI-KVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPEL 270 (386)
T ss_pred ----------------HHhcCCEEE-EEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHH
Confidence 999999987 676
Q ss_pred ------------------CCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCCh-hhhcccccCc
Q 003948 400 ------------------GHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPP-AEAAADRMHG 446 (784)
Q Consensus 400 ------------------Ghd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~-ae~~~~~~Hg 446 (784)
|||+++|.+||++++.. .++|++|+++|+||+|.+. +|+. ..+|+
T Consensus 271 ~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~-~~kPt~Iia~TikG~G~~~~~e~~-~~~h~ 334 (386)
T cd02017 271 KALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH-KGKPTVILAKTIKGYGLGAAGEGR-NHAHQ 334 (386)
T ss_pred HHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC-CCCCeEEEEeCeecCCCChhccCC-cchhc
Confidence 99999999999999863 4789999999999999984 6654 56776
No 37
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=1.1e-38 Score=337.51 Aligned_cols=228 Identities=29% Similarity=0.484 Sum_probs=193.8
Q ss_pred HHHHHHHHHHhh-ccCCCCCCCCcHHHHHHHHhhcc-C----C----CCcEEEeCCCchH---HHHHHHhCc--hHHhHH
Q 003948 165 AELRADIVNSVS-KTGGHLSANLGVVELTLALHRVF-N----T----PDDKIIWDVGHQA---YVHKILTGR--RSRMNT 229 (784)
Q Consensus 165 ~~iR~~ii~~v~-~~gGH~gsslg~~el~vaL~~~~-~----~----p~D~~i~s~GH~~---y~~~~l~G~--~~~l~~ 229 (784)
++||+++++|+. .++||+++++|++|++++||+.+ + + ++||||+|+||++ |++++++|+ .++|.+
T Consensus 1 ~~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~ 80 (255)
T cd02012 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYLPEEDLKT 80 (255)
T ss_pred ChHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHH
Confidence 368999999997 58899999999999999998643 2 1 3799999999999 778899998 488999
Q ss_pred HHhcCC-CCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCC-CEE
Q 003948 230 MRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDA-NLI 307 (784)
Q Consensus 230 ~r~~gg-l~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~-nli 307 (784)
||+.++ ++|||++..+++..+++|++|+++|+|+|+|+|.++.+++++|||++|||++++|++|||+++|+++++ |++
T Consensus 81 ~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li 160 (255)
T cd02012 81 FRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLI 160 (255)
T ss_pred hcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEE
Confidence 999986 899999888888899999999999999999999999999999999999999999999999999999995 699
Q ss_pred EEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhh
Q 003948 308 VVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFF 387 (784)
Q Consensus 308 vIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lf 387 (784)
+|+|||++ ++ ++...... ...++.. +|
T Consensus 161 ~vvdnN~~-~~-----~~~~~~~~-------------------------------~~~~~~~----------------~~ 187 (255)
T cd02012 161 AIVDSNRI-QI-----DGPTDDIL-------------------------------FTEDLAK----------------KF 187 (255)
T ss_pred EEEECCCc-cc-----cCcHhhcc-------------------------------CchhHHH----------------HH
Confidence 99999986 22 11110000 0123333 49
Q ss_pred hhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc
Q 003948 388 EELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (784)
Q Consensus 388 ea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~ 448 (784)
++|||+++ .|||||+++|.++++++++. .++|++|+++|.||+|++++|+ ..+||+.+
T Consensus 188 ~a~G~~~~-~v~G~d~~~l~~al~~a~~~-~~~P~~I~~~t~kg~g~~~~e~-~~~~H~~~ 245 (255)
T cd02012 188 EAFGWNVI-EVDGHDVEEILAALEEAKKS-KGKPTLIIAKTIKGKGVPFMEN-TAKWHGKP 245 (255)
T ss_pred HHcCCeEE-EECCCCHHHHHHHHHHHHHc-CCCCEEEEEEeecccccCccCC-CccccCCC
Confidence 99999987 79999999999999999863 2799999999999999999886 46789764
No 38
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=4.2e-37 Score=365.94 Aligned_cols=417 Identities=16% Similarity=0.148 Sum_probs=296.9
Q ss_pred CcccchhHHHHHHHHHHHHHhCC------CCeEEEEEcCCcc-cchhhHHHHHHHhhcCCCE---EEEEECCCCCCcCcc
Q 003948 252 AGHSSTSISAGLGMAVARDILGK------NNNVISVIGDGAM-TAGQAYEAMNNAGFLDANL---IVVLNDNKQVSLPTA 321 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~------~~~Vv~viGDGal-~eG~~~EAln~A~~~~~nl---ivIv~dN~~~s~~t~ 321 (784)
-+|++...|.|+|+|.|.++++. +..++|++|||++ .+|.+||+||+|+.|+.|+ |+||.||++ .+.|.
T Consensus 314 pSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqy-g~tT~ 392 (929)
T TIGR00239 314 PSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQI-GFTTN 392 (929)
T ss_pred CcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCE-EEEEc
Confidence 57899999999999999998865 4678999999997 7999999999999999997 999999985 33221
Q ss_pred CCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCC
Q 003948 322 TLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGH 401 (784)
Q Consensus 322 ~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGh 401 (784)
..+... .....+ +++++|+..+ .|||+
T Consensus 393 ~~~~~s------------------------------------~~~~sd----------------~Ak~ygiP~~-~VDG~ 419 (929)
T TIGR00239 393 PLDARS------------------------------------TPYCSD----------------LAKMIQAPIF-HVNAD 419 (929)
T ss_pred HHHhcC------------------------------------ccCHHH----------------HheecCCCEE-EECCC
Confidence 110000 011222 2788899876 89999
Q ss_pred CHHHHHHHHHHhhcC--CCCCcEEEEEEecCCCCCChhhhcc---------cccCccc----------------------
Q 003948 402 NVEDLVTIFQRVKEM--PAPGPVLIHVVTEKGKGYPPAEAAA---------DRMHGVV---------------------- 448 (784)
Q Consensus 402 d~~~l~~al~~ak~~--~~~~P~lI~v~T~kG~G~~~ae~~~---------~~~Hg~~---------------------- 448 (784)
|++++..+.+.|.+. ..++|++|++.|.+-+|+....... .+-|--+
T Consensus 420 D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i 499 (929)
T TIGR00239 420 DPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEM 499 (929)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999888766542 3679999999999999985322110 0001100
Q ss_pred ------------------c-ccc-----------------ccc----------cc---cCC-------------------
Q 003948 449 ------------------K-FDP-----------------KTG----------KQ---FKT------------------- 460 (784)
Q Consensus 449 ------------------~-fd~-----------------~~g----------~~---~~~------------------- 460 (784)
+ .++ .|+ +. +++
T Consensus 500 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~ 579 (929)
T TIGR00239 500 VNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAM 579 (929)
T ss_pred HHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHHH
Confidence 0 000 010 00 000
Q ss_pred --CCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCC-----------------C-hhhhHHhC-CCCeeeccccHHHH
Q 003948 461 --KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGT-----------------G-LNYFQKRF-PDRCFDVGIAEQHA 519 (784)
Q Consensus 461 --~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~-----------------g-l~~f~~~~-p~R~~d~GIaE~~~ 519 (784)
.....+|.+|.+.++..++++|++|+++++|++.++ + ++++.++| +.|++|++|+|.++
T Consensus 580 ~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~ 659 (929)
T TIGR00239 580 AAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESV 659 (929)
T ss_pred hcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHH
Confidence 012256889999999999999999999999997532 1 35677787 79999999999999
Q ss_pred HHHHHHHHhcCCeeE--EEe-cHhHH---HHHHHHHHHHh-hc--CCCCEEEEeeCCCCCCCCCCCcCchhhHhHh--cc
Q 003948 520 VTFAAGLASEGVKPF--CAI-YSSFL---QRGYDQVVHDV-DL--QKLPVRFAMDRAGLVGADGPTHCGAFDVTFM--SC 588 (784)
Q Consensus 520 vg~AaGlA~~G~~P~--~~t-ys~Fl---~ra~dQi~~~~-a~--~~lpV~~v~~~~G~~G~dG~THq~~~dla~l--r~ 588 (784)
+|++.|+|+.|.+|+ ++. |.+|+ |.++||+++.. ++ ...++++...+++ .|..+..|++..+ +++ .+
T Consensus 660 ~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G~-~g~g~~hsS~~~E-~~lql~~ 737 (929)
T TIGR00239 660 LGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHGY-EGQGPEHSSGRLE-RFLQLAA 737 (929)
T ss_pred HHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecCcC-CCCCchhhccCHH-HHHHHhC
Confidence 999999999998875 776 99997 47799998873 43 2456777776653 3443444554444 566 78
Q ss_pred CCCcEEEecCCHHHHHHHHH-HHHHhCCCCeEEEcCCCCCcc-------ccCCCCCCCCCcccccee-----EeeeCCcE
Q 003948 589 LPNMVVMAPSDEAELMHMVA-TAAVIDDRPSCFRFPRGNGIG-------AVLPPNNKGTPLEIGKGR-----ILMEGDRV 655 (784)
Q Consensus 589 iPn~~V~~Psd~~E~~~~l~-~A~~~~~~Pv~irl~r~~~~~-------~~~p~~~~~~~~~igk~~-----vlreG~dv 655 (784)
.|||+|+.|++|.+++++++ .|+...++|++|..|+..... .++|+. .+..+++... +.+++-+.
T Consensus 738 ~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~--~f~~~i~~~~~~~~~~~~~~v~~ 815 (929)
T TIGR00239 738 EQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEG--TFQPVIGEIEESGLSLDPEGVKR 815 (929)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCC--CcccccccccccccccCccCCcE
Confidence 89999999999999999999 576534899999998865321 134432 2344443211 22234444
Q ss_pred EEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCC---eEEEE-cCCCcCCcHHHHHHHHHh
Q 003948 656 AILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE---ILITV-EEGSVGGFGSHVCHFLTL 728 (784)
Q Consensus 656 tIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~---~vVvv-Ee~~~gG~gs~V~~~l~~ 728 (784)
+|+++| +++.++++ +.++++|+++.|||+++|.|||.+.|.+.++++. .+|.+ ||....|-...|...|..
T Consensus 816 vv~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~ 890 (929)
T TIGR00239 816 LVLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLRE 890 (929)
T ss_pred EEEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHH
Confidence 555555 88888877 6677789999999999999999999999998874 45555 555554545566666653
No 39
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-35 Score=296.21 Aligned_cols=304 Identities=20% Similarity=0.303 Sum_probs=253.4
Q ss_pred chhhHHHHHHHHHHHHHhhCCCEEEEecCCCCC--CC-hhhhHHhCC-CCeeeccccHHHHHHHHHHHHhcCCeeEEEe-
Q 003948 463 PTLTYTQYFAESLIKEAETDDKIVAIHAAMGGG--TG-LNYFQKRFP-DRCFDVGIAEQHAVTFAAGLASEGVKPFCAI- 537 (784)
Q Consensus 463 ~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs--~g-l~~f~~~~p-~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~t- 537 (784)
+.++..++++++|.-.++.||+-+++++|++-+ +. ..+++++|. +|+||++++||+++|+..|+|..|.+.+.++
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiq 118 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQ 118 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEe
Confidence 456778899999999999999999999998732 11 246888885 8999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHHHHhhcCC--------CC-EEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHH
Q 003948 538 YSSFLQRGYDQVVHDVDLQK--------LP-VRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (784)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~~~--------lp-V~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~ 608 (784)
|++|+..|||||+|.+++.+ +- ..+. ...|.+|..+..|++..+ +++.+.||++|+.|..|.|+++++.
T Consensus 119 fadyifpafdqivneaakfryrsgnqfncg~ltir-~p~gavghg~~yhsqspe-aff~h~pgikvviprsp~qakglll 196 (362)
T KOG0525|consen 119 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIR-APWGAVGHGALYHSQSPE-AFFCHVPGIKVVIPRSPRQAKGLLL 196 (362)
T ss_pred eccccchhHHHHHHHHHhheeccCCccccCceEEe-ccccccccccccccCCch-hheecCCCceEEecCCcchhhceee
Confidence 99999999999999998631 11 3333 234667899999999988 8999999999999999999999999
Q ss_pred HHHHhCCCCeEEEcCCCCCc--cccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhc-CCCcEEEee
Q 003948 609 TAAVIDDRPSCFRFPRGNGI--GAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKS-QDISVTVAD 685 (784)
Q Consensus 609 ~A~~~~~~Pv~irl~r~~~~--~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~-~GI~v~VId 685 (784)
.+++ +.+|+++++|+-... ..++|. .+|.++++.++++|+|+|++||+||..++.++|+|.+-++ +|++++|||
T Consensus 197 scir-dpnp~iffepk~lyr~a~edvp~--~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevid 273 (362)
T KOG0525|consen 197 SCIR-DPNPCIFFEPKILYRQAVEDVPE--GDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVID 273 (362)
T ss_pred eecc-CCCceEEechHHHHHHhhhhCCC--CCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEe
Confidence 9975 899999999875321 134564 4689999999999999999999999999999999886654 599999999
Q ss_pred ccccCCCcHHHHHHHhccCCeEEEEcCC-CcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHH-cCCC
Q 003948 686 ARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEE-SGLS 763 (784)
Q Consensus 686 ~~slkPlD~e~i~~~~~~~~~vVvvEe~-~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~-~gl~ 763 (784)
++++.|+|.|.+.+++++++++++-.|. .+||||++|++-+.+++++....++-|++.-|++-++ ++|- |-.+
T Consensus 274 lkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~-----vfepfy~pt 348 (362)
T KOG0525|consen 274 LKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH-----VFEPFYMPT 348 (362)
T ss_pred eecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc-----cccccccCc
Confidence 9999999999999999888765555554 5899999999999999998777788888777776654 2332 3358
Q ss_pred HHHHHHHHHHHhc
Q 003948 764 SRHISATVLSLLG 776 (784)
Q Consensus 764 ~~~I~~~i~~ll~ 776 (784)
...|.++|++.++
T Consensus 349 k~ki~daik~~vn 361 (362)
T KOG0525|consen 349 KNKILDAIKKTVN 361 (362)
T ss_pred HhHHHHHHHHhcc
Confidence 8899999988653
No 40
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=1e-33 Score=278.08 Aligned_cols=154 Identities=51% Similarity=0.847 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHH
Q 003948 470 YFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQV 549 (784)
Q Consensus 470 af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi 549 (784)
+++++|.+++++||+++++++|++.++++++|+++||+|++|+||+|++|+++|+|+|+.|++|++++|+.|++|++|||
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi 81 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQI 81 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHH
Confidence 68899999999999999999999988889999999999999999999999999999999999999999988899999999
Q ss_pred HHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q 003948 550 VHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR 624 (784)
Q Consensus 550 ~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl~r 624 (784)
+++++++++||+++++++|+ .|.+|+|||+.+|+++++++||++|++|+|++|++.++++|++ +++|++||++|
T Consensus 82 ~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~irl~~ 156 (156)
T cd07033 82 RHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYIRLPR 156 (156)
T ss_pred HHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEeeC
Confidence 99999999999999999887 5699999999999999999999999999999999999999997 56799999986
No 41
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.97 E-value=4.4e-31 Score=261.52 Aligned_cols=153 Identities=25% Similarity=0.397 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhhCCCEEEEecCCCCC----CChhhhHHhCCC-CeeeccccHHHHHHHHHHHHhcCCeeEEE-ecHhHH
Q 003948 469 QYFAESLIKEAETDDKIVAIHAAMGGG----TGLNYFQKRFPD-RCFDVGIAEQHAVTFAAGLASEGVKPFCA-IYSSFL 542 (784)
Q Consensus 469 ~af~~aL~~l~~~d~~iv~i~aD~ggs----~gl~~f~~~~p~-R~~d~GIaE~~~vg~AaGlA~~G~~P~~~-tys~Fl 542 (784)
++++++|.+++++||+++++++|++.+ ..+++|+++||+ ||||+||+|++++++|+|||+.|++||++ +|++|+
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl 80 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFA 80 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHH
Confidence 368899999999999999999998642 245899999999 99999999999999999999999999999 699999
Q ss_pred HHHHHHHHHHhhcC--------CCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhC
Q 003948 543 QRGYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVID 614 (784)
Q Consensus 543 ~ra~dQi~~~~a~~--------~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~ 614 (784)
+|++|||++++|++ ++||++++.++| .+.+|+||+ .+|+++||++|||+|++|+|+.|+..+++++++ .
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg-~~~~G~ths-~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~-~ 157 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG-GIGGGAQHS-QSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR-D 157 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC-CCCcChhhh-hhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-C
Confidence 99999999999986 499999997766 567899976 566899999999999999999999999999987 6
Q ss_pred CCCeEEEcCC
Q 003948 615 DRPSCFRFPR 624 (784)
Q Consensus 615 ~~Pv~irl~r 624 (784)
++|++|++||
T Consensus 158 ~~P~~~~e~k 167 (167)
T cd07036 158 DDPVIFLEHK 167 (167)
T ss_pred CCcEEEEecC
Confidence 7999999875
No 42
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.97 E-value=6.4e-31 Score=263.71 Aligned_cols=163 Identities=39% Similarity=0.582 Sum_probs=144.6
Q ss_pred hhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhC---CCCeeeccccHHHHHHHHHHHHhcC--CeeEEEec
Q 003948 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRF---PDRCFDVGIAEQHAVTFAAGLASEG--VKPFCAIY 538 (784)
Q Consensus 464 ~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~---p~R~~d~GIaE~~~vg~AaGlA~~G--~~P~~~ty 538 (784)
+++++++++++|.+++++|++|+++++|++++++...+.+.+ |+|++|+||+|++|+++|+|+|+.| ++|++.+|
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f 81 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVESTF 81 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEeec
Confidence 468999999999999999999999999999887766666555 4599999999999999999999999 77777889
Q ss_pred HhHHH----HHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHh
Q 003948 539 SSFLQ----RGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613 (784)
Q Consensus 539 s~Fl~----ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~ 613 (784)
++|+. |+++|++++.+++++||. ++.++|+ .|.+|+|||+.+|+++++++||++|++|+|+.|++.++++++++
T Consensus 82 ~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~ 160 (178)
T PF02779_consen 82 ADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR 160 (178)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS
T ss_pred cccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHh
Confidence 99998 999999999999999999 7777877 78999999999999999999999999999999999999999985
Q ss_pred -CCCCeEEEcCCCCC
Q 003948 614 -DDRPSCFRFPRGNG 627 (784)
Q Consensus 614 -~~~Pv~irl~r~~~ 627 (784)
+++|+|||++|+++
T Consensus 161 ~~~~P~~ir~~r~~~ 175 (178)
T PF02779_consen 161 ESDGPVYIREPRGLY 175 (178)
T ss_dssp SSSSEEEEEEESSEE
T ss_pred CCCCeEEEEeeHHhC
Confidence 68999999999864
No 43
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.95 E-value=1.1e-27 Score=237.74 Aligned_cols=159 Identities=40% Similarity=0.627 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHHHhhCC-CEEEEecCCCCCCChhhhHHhCCCC-------eeeccccHHHHHHHHHHHHhcCCeeEEEe
Q 003948 466 TYTQYFAESLIKEAETDD-KIVAIHAAMGGGTGLNYFQKRFPDR-------CFDVGIAEQHAVTFAAGLASEGVKPFCAI 537 (784)
Q Consensus 466 s~~~af~~aL~~l~~~d~-~iv~i~aD~ggs~gl~~f~~~~p~R-------~~d~GIaE~~~vg~AaGlA~~G~~P~~~t 537 (784)
++++++.++|.+++++|+ +++++++|++.++++.. .+.||+| ++|+||+|++++++|+|+|++|++||+++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~ 79 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR-GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAI 79 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc-CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEe
Confidence 367899999999999955 89999999988877663 5666665 99999999999999999999999999999
Q ss_pred cHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCC
Q 003948 538 YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRP 617 (784)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~P 617 (784)
|+.|+.|++||+++++++++.|+++..+.++..|.+|+|||+.+|+++++.+||++|++|+|+.|++.+++++++..++|
T Consensus 80 ~~~f~~~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~p 159 (168)
T smart00861 80 FFTFFDRAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDGP 159 (168)
T ss_pred eHHHHHHHHHHHHHhCcccCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCC
Confidence 99999999999988877765665554433333788999999999999999999999999999999999999999765789
Q ss_pred eEEEcCCC
Q 003948 618 SCFRFPRG 625 (784)
Q Consensus 618 v~irl~r~ 625 (784)
++||++++
T Consensus 160 ~~i~~~~~ 167 (168)
T smart00861 160 PVIRLERK 167 (168)
T ss_pred EEEEecCC
Confidence 99999875
No 44
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=9.7e-23 Score=230.21 Aligned_cols=470 Identities=18% Similarity=0.214 Sum_probs=299.4
Q ss_pred CCCCCCCCcHHHHHHHHhhccC-CCCcE-EEeCCCchHH---HHHHHhCc---------------hHHhHHHHhcCCCCC
Q 003948 179 GGHLSANLGVVELTLALHRVFN-TPDDK-IIWDVGHQAY---VHKILTGR---------------RSRMNTMRKTSGLAG 238 (784)
Q Consensus 179 gGH~gsslg~~el~vaL~~~~~-~p~D~-~i~s~GH~~y---~~~~l~G~---------------~~~l~~~r~~ggl~g 238 (784)
-||+|++.|..-+++.|..+.+ ...+. +|...||..- +..+|.|. .+.++.|+-.||+++
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~PgGi~S 139 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFPGGIGS 139 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCCCCccc
Confidence 3899999999999888876532 12344 4666799873 22344452 234555666789999
Q ss_pred CCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchh---hHHHHHHHh-hcCCCEEEEEECCC
Q 003948 239 FPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQ---AYEAMNNAG-FLDANLIVVLNDNK 314 (784)
Q Consensus 239 ~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~---~~EAln~A~-~~~~nlivIv~dN~ 314 (784)
|..+ |.|+..-..|-+|++++.|.|.|+ ..++-.+.|++|||+-.+|. .|-+-.+-. ....+++-|+.-||
T Consensus 140 H~~p-etPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lNG 214 (793)
T COG3957 140 HVAP-ETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLNG 214 (793)
T ss_pred ccCC-CCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEecc
Confidence 9887 678777778999999999988886 45689999999999777663 333322222 23478999999999
Q ss_pred C-CCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCe
Q 003948 315 Q-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY 393 (784)
Q Consensus 315 ~-~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~ 393 (784)
+ ++.||... .++ -+++. .+|+.+||.
T Consensus 215 ykI~npT~la--------r~s-----------------------------~~el~----------------~~f~G~Gy~ 241 (793)
T COG3957 215 YKIENPTVLA--------RIS-----------------------------DEELK----------------ALFEGYGYE 241 (793)
T ss_pred eeccCceeee--------ecC-----------------------------hHHHH----------------HHHhhCCCc
Confidence 6 55444321 110 02222 349999998
Q ss_pred EEeecCCCCHHHHHHH--------HH-------HhhcC-CCCCcE--EEEEEecCCCCCChhhh-----cccccCcccc-
Q 003948 394 YIGPVDGHNVEDLVTI--------FQ-------RVKEM-PAPGPV--LIHVVTEKGKGYPPAEA-----AADRMHGVVK- 449 (784)
Q Consensus 394 ~i~~vDGhd~~~l~~a--------l~-------~ak~~-~~~~P~--lI~v~T~kG~G~~~ae~-----~~~~~Hg~~~- 449 (784)
.+ .|+|+|+++..+. ++ ++++. ...+|. +|.++|.||++.+..-. ...+.|.++.
T Consensus 242 p~-~veg~d~~d~hq~mAa~ldt~~~~i~~iq~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~ 320 (793)
T COG3957 242 PV-FVEGADPADMHQLMAAVLDTAFEEIQRIQRRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLK 320 (793)
T ss_pred ee-EecCCChHHhhhhHHHHHHHHHHHHHHHHHHHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCC
Confidence 76 6899998873221 11 23321 123443 68899999987542111 1223576651
Q ss_pred ------------------------cccc------------cc-cc---------------cC-C------------CCch
Q 003948 450 ------------------------FDPK------------TG-KQ---------------FK-T------------KSPT 464 (784)
Q Consensus 450 ------------------------fd~~------------~g-~~---------------~~-~------------~~~~ 464 (784)
||.. +| +. ++ + ...+
T Consensus 321 ~~~~~p~h~~~l~~wl~sy~p~elfde~gaL~~e~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~ 400 (793)
T COG3957 321 GHNLNPAHLLELEEWLKSYKPEELFDEHGALKPELRELAPKGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVT 400 (793)
T ss_pred CCCCCchhhHHHHHHHHhcChHhhhcccCCCCHHHHHhccccccccCCCCcccCccccccCCCCChhhcCcccCCCCccc
Confidence 2210 00 00 00 0 0012
Q ss_pred hhHHHHHHHHHHHHHhhCCC-EEEEecCCCCCCChhhhHH----h-------------CCCCeeeccccHHHHHHHHHHH
Q 003948 465 LTYTQYFAESLIKEAETDDK-IVAIHAAMGGGTGLNYFQK----R-------------FPDRCFDVGIAEQHAVTFAAGL 526 (784)
Q Consensus 465 ~s~~~af~~aL~~l~~~d~~-iv~i~aD~ggs~gl~~f~~----~-------------~p~R~~d~GIaE~~~vg~AaGl 526 (784)
..-+.++++.+.++++.|++ +.++++|...|+++.+.-+ . -.+|+++ .++|+.+.|++.|+
T Consensus 401 ~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy 479 (793)
T COG3957 401 AESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGY 479 (793)
T ss_pred hhhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHH
Confidence 33467889999999999886 9999999888887754321 1 1479999 89999999999999
Q ss_pred HhcCCeeEEEecHhHHHHHHHHHHHHhhc-----------CCCCEEEEeeCCCC--CCCCCCCcCchhhHhH-hccCCC-
Q 003948 527 ASEGVKPFCAIYSSFLQRGYDQVVHDVDL-----------QKLPVRFAMDRAGL--VGADGPTHCGAFDVTF-MSCLPN- 591 (784)
Q Consensus 527 A~~G~~P~~~tys~Fl~ra~dQi~~~~a~-----------~~lpV~~v~~~~G~--~G~dG~THq~~~dla~-lr~iPn- 591 (784)
++.|.+-++++|..|+ +-.|.++++-++ ...|-......++. .+.+|.|||...=+.. +.-.++
T Consensus 480 ~LtGr~glf~sYEaF~-~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~ 558 (793)
T COG3957 480 LLTGRHGLFASYEAFA-HIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDI 558 (793)
T ss_pred HhcCCccceeeHHHHH-HHHHHHHhhhHHHHHHHHhcccCCCCCcccceeehhhhhcccCCCccCCchHHHHHHhhccCc
Confidence 9999999999999997 223333333221 12221111222443 5899999997544433 334555
Q ss_pred cEEEecCCHHHHHHHHHHHHHhCCCCeEEEcCCCCCccc-cCCCCCCCCCccccceeEee--eC-CcEEEEEechhH-HH
Q 003948 592 MVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGA-VLPPNNKGTPLEIGKGRILM--EG-DRVAILGYGSIV-QQ 666 (784)
Q Consensus 592 ~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl~r~~~~~~-~~p~~~~~~~~~igk~~vlr--eG-~dvtIva~Gs~v-~~ 666 (784)
+.||.|+|++-+..++.+|+...+.-.+|..+|++.+.. ...+..+...-.++-+.... +| .||++.+.|.+. .+
T Consensus 559 vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e 638 (793)
T COG3957 559 VRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIE 638 (793)
T ss_pred eeEecCCCCcchhhhhhHHhhccCceEEEEecCCCcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHH
Confidence 569999999999999999998777777777788753211 00000000010111111111 12 479999999985 79
Q ss_pred HHHHHHHHhcCC--CcEEEeec---cccCC-------CcHHHHHHHhccCCeEEE
Q 003948 667 CVLAANMLKSQD--ISVTVADA---RFCKP-------LDTDLIRQLANEHEILIT 709 (784)
Q Consensus 667 aleAae~L~~~G--I~v~VId~---~slkP-------lD~e~i~~~~~~~~~vVv 709 (784)
+++|+++|++++ ++++||++ ..+.| ++.+.+.++.-+.+++|.
T Consensus 639 ~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif 693 (793)
T COG3957 639 VLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIF 693 (793)
T ss_pred HHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCcceee
Confidence 999999999998 88776655 44444 344566666655566554
No 45
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.90 E-value=5.6e-23 Score=222.61 Aligned_cols=225 Identities=24% Similarity=0.311 Sum_probs=165.9
Q ss_pred CCCHHHHHHH---HHHHHHHHHHHhh-----ccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCc--
Q 003948 154 NLSTEDLEQL---AAELRADIVNSVS-----KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR-- 223 (784)
Q Consensus 154 ~~~~~~L~~l---a~~iR~~ii~~v~-----~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~-- 223 (784)
+++.++|.++ --.+|..=-.+.. +.+|..++++|+.-..++.-..++...|+++. .|++++|.+.+|.
T Consensus 23 ~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~--~YR~h~~~l~~G~~~ 100 (358)
T COG1071 23 ALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFP--TYRDHGHLLARGVPL 100 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeec--ccCccccceecCCCH
Confidence 4555555544 2344544433432 46789999999998888887777544598887 8999999999997
Q ss_pred hHHhHHHHhcCCCCCCCCCC-------CCccccc-CCcccchhHHHHHHHHHHHHHhCCCC-eEEEEEcCCcccchhhHH
Q 003948 224 RSRMNTMRKTSGLAGFPKRE-------ESVHDAF-GAGHSSTSISAGLGMAVARDILGKNN-NVISVIGDGAMTAGQAYE 294 (784)
Q Consensus 224 ~~~l~~~r~~ggl~g~~~~~-------e~~~~~~-g~G~~G~~ls~AvG~AlA~~~~g~~~-~Vv~viGDGal~eG~~~E 294 (784)
.+.|..+. |.-.|.++++ ..+...+ +.|.+|++++.|+|+|+|.|++++++ .++|++|||+.++|.+||
T Consensus 101 ~~~~a~~~--G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhE 178 (358)
T COG1071 101 KEIMAELL--GKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHE 178 (358)
T ss_pred HHHHHHHh--ccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHH
Confidence 34455541 1122222221 1122233 57999999999999999999999655 999999999999999999
Q ss_pred HHHHHhhcCCCEEEEEECCCC-CCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHH
Q 003948 295 AMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDE 373 (784)
Q Consensus 295 Aln~A~~~~~nlivIv~dN~~-~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~ 373 (784)
+||+|+.|++|+||+|+||++ +|+|...+. ..+.++.|
T Consensus 179 alN~A~v~klPvvf~ieNN~yAiSvp~~~q~--------------------------------------~~~~~~~r--- 217 (358)
T COG1071 179 ALNFAAVWKLPVVFVIENNQYAISVPRSRQT--------------------------------------AAEIIAAR--- 217 (358)
T ss_pred HHHHHHHhcCCEEEEEecCCceeecchhhcc--------------------------------------cchhHHhh---
Confidence 999999999999999999997 554332110 01223334
Q ss_pred HhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEecCCCCCChh
Q 003948 374 YARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVTEKGKGYPPA 437 (784)
Q Consensus 374 ~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~--~~~~P~lI~v~T~kG~G~~~a 437 (784)
..+||+..+ .|||+|+.+++++.++|.+. .+.+|+|||+.|.+-.|++..
T Consensus 218 -------------a~aygipgv-~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~s 269 (358)
T COG1071 218 -------------AAAYGIPGV-RVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTS 269 (358)
T ss_pred -------------hhccCCCeE-EECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCC
Confidence 778999987 78999999999888766542 367999999999999998865
No 46
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.90 E-value=1.5e-22 Score=222.29 Aligned_cols=229 Identities=21% Similarity=0.261 Sum_probs=165.9
Q ss_pred cccccCCCHHHHHHHH-HHHHHHHHH--Hh---h--ccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHH
Q 003948 149 PIHMKNLSTEDLEQLA-AELRADIVN--SV---S--KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKIL 220 (784)
Q Consensus 149 p~~~k~~~~~~L~~la-~~iR~~ii~--~v---~--~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l 220 (784)
+.|.++++.++|.++- .-++.+.++ +. . +..|+++++.|...+.+++-..+ .|+|.++. .|++++|.+.
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~la 87 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLL-AETDYVCS--TYRDHVHALS 87 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhC-CCCCEEEc--ccccHHHHHH
Confidence 4667778887766553 222222222 22 1 23588999999998888876667 45799888 9999999999
Q ss_pred hCc--hHHhHHH--HhcC---CCCCCCCCCCCccccc-CCcccchhHHHHHHHHHHHHHhC-------CCCeEEEEEcCC
Q 003948 221 TGR--RSRMNTM--RKTS---GLAGFPKREESVHDAF-GAGHSSTSISAGLGMAVARDILG-------KNNNVISVIGDG 285 (784)
Q Consensus 221 ~G~--~~~l~~~--r~~g---gl~g~~~~~e~~~~~~-g~G~~G~~ls~AvG~AlA~~~~g-------~~~~Vv~viGDG 285 (784)
.|. .+.|..+ +..| |..|..+....+...+ +.|++|.++|.|+|+|+|.++++ +++.|+|++|||
T Consensus 88 ~G~~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDG 167 (341)
T CHL00149 88 KGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDG 167 (341)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCc
Confidence 997 3445554 1222 2223223222333333 46999999999999999999987 488999999999
Q ss_pred cccchhhHHHHHHHhhcCCCEEEEEECCCC-CCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCch
Q 003948 286 AMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQT 364 (784)
Q Consensus 286 al~eG~~~EAln~A~~~~~nlivIv~dN~~-~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~ 364 (784)
++++|++||+||+|+.+++|+++||.||++ ++.++..+. ..
T Consensus 168 a~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~--------------------------------------~~ 209 (341)
T CHL00149 168 TTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRST--------------------------------------SI 209 (341)
T ss_pred hhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhhee--------------------------------------CC
Confidence 999999999999999999999999999994 444322110 01
Q ss_pred HHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH----HHHhhcCCCCCcEEEEEEecCCCCCChh
Q 003948 365 HEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI----FQRVKEMPAPGPVLIHVVTEKGKGYPPA 437 (784)
Q Consensus 365 ~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a----l~~ak~~~~~~P~lI~v~T~kG~G~~~a 437 (784)
.++.. ++++||+..+ .|||+|+.++.++ ++++++ .++|++|++.|.+..|++..
T Consensus 210 ~d~a~----------------~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~--~~gP~lIev~tyR~~gHs~~ 267 (341)
T CHL00149 210 PEIHK----------------KAEAFGLPGI-EVDGMDVLAVREVAKEAVERARQ--GDGPTLIEALTYRFRGHSLA 267 (341)
T ss_pred ccHHH----------------HHHhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEEEecCCCcCCC
Confidence 23333 3899999987 8999999876654 445554 57899999999999998854
No 47
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.89 E-value=3.1e-22 Score=220.57 Aligned_cols=199 Identities=21% Similarity=0.267 Sum_probs=148.9
Q ss_pred cCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCc--hHHhHHH--HhcC---CCCCCCCCCCCccccc
Q 003948 178 TGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTM--RKTS---GLAGFPKREESVHDAF 250 (784)
Q Consensus 178 ~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~--r~~g---gl~g~~~~~e~~~~~~ 250 (784)
..|++.++.|..-+.+++-..+ .|+|+++. .|+.++|.+..|. .+.|..+ |..| |..|..+....+...+
T Consensus 58 i~g~~~~~~GqEA~~vg~~~aL-~~~D~~~~--~yR~hg~~la~G~~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~ 134 (362)
T PLN02269 58 IRGFCHLYDGQEAVAVGMEAAI-TKEDAIIT--AYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFY 134 (362)
T ss_pred cccccCCCCChHHHHHHHHHhc-CCCCEEEe--chhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCcccccchhcCcc
Confidence 3488999999998888776666 46899988 8999999999997 3444444 2222 2333333222233333
Q ss_pred -CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCC-CCcCccCCCCCCC
Q 003948 251 -GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPAT 328 (784)
Q Consensus 251 -g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~-~s~~t~~~dg~~~ 328 (784)
++|++|+++|.|+|+|+|.|+++++..++|++|||++++|.+|||||+|+.|++|+++||+||++ ++.|+..+.
T Consensus 135 ~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~---- 210 (362)
T PLN02269 135 GGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGTAEWRAA---- 210 (362)
T ss_pred ccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEeccCchhhhc----
Confidence 57999999999999999999999999999999999999999999999999999999999999995 332221110
Q ss_pred CcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 329 ~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
....+.. ++++...+ .|||+|++++.+
T Consensus 211 ----------------------------------~~~~~~~------------------~~~~~p~~-~VDG~D~~av~~ 237 (362)
T PLN02269 211 ----------------------------------KSPAYYK------------------RGDYVPGL-KVDGMDVLAVKQ 237 (362)
T ss_pred ----------------------------------cchHHHH------------------hhcCCCeE-EECCCCHHHHHH
Confidence 0011221 12344444 789999999999
Q ss_pred HHHHhhcC--CCCCcEEEEEEecCCCCCChh
Q 003948 409 IFQRVKEM--PAPGPVLIHVVTEKGKGYPPA 437 (784)
Q Consensus 409 al~~ak~~--~~~~P~lI~v~T~kG~G~~~a 437 (784)
+++++.+. . ++|++|+++|.+-.|++..
T Consensus 238 a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~ 267 (362)
T PLN02269 238 ACKFAKEHALS-NGPIVLEMDTYRYHGHSMS 267 (362)
T ss_pred HHHHHHHHHHh-CCCEEEEEecCcCCCcCCC
Confidence 99876542 3 7899999999999998743
No 48
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.88 E-value=2.3e-21 Score=209.47 Aligned_cols=202 Identities=22% Similarity=0.286 Sum_probs=153.8
Q ss_pred ccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCc--hHHhHHH--HhcC---CC--CCCCCCCCCcc
Q 003948 177 KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTM--RKTS---GL--AGFPKREESVH 247 (784)
Q Consensus 177 ~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~--r~~g---gl--~g~~~~~e~~~ 247 (784)
+..|+..++.|...+.+++-..++ |+|.++. .|++++|.+.+|. .+.|..+ +..| |. +.|... ....
T Consensus 23 ~~~~~~~~~~GqEa~~vg~~~~l~-~~D~~~~--~yR~~~~~la~G~~~~~~~~e~~g~~~g~~~G~~g~~h~~~-~~~~ 98 (293)
T cd02000 23 KIGGFYHLSIGQEAVAVGVAAALR-PGDWVFP--TYRDHGHALARGVDLKEMLAELFGKETGPCKGRGGSMHIGD-KEKN 98 (293)
T ss_pred ccccccCCCCChHHHHHHHHHHCC-CCCEEEe--cchhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCCCc-hhcC
Confidence 456778899999999999988884 6898876 8999999999997 3444444 1122 12 222221 1234
Q ss_pred cccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCC
Q 003948 248 DAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPA 327 (784)
Q Consensus 248 ~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~ 327 (784)
...+.|++|+++|+|+|+|+|.++.+++++|||++|||++++|.+||+||+|+.+++|+++||+||++ ++.+....
T Consensus 99 ~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~-~i~~~~~~--- 174 (293)
T cd02000 99 FFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGY-AISTPTSR--- 174 (293)
T ss_pred ccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCe-eccCCHHH---
Confidence 44578999999999999999999999999999999999999999999999999999999999999984 32111100
Q ss_pred CCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHH
Q 003948 328 TPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLV 407 (784)
Q Consensus 328 ~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~ 407 (784)
. . ...++ ..++++||+.++ .|||+|++++.
T Consensus 175 ------------~-------------------~--~~~~~----------------~~~a~a~G~~~~-~Vdg~d~~~v~ 204 (293)
T cd02000 175 ------------Q-------------------T--AGTSI----------------ADRAAAYGIPGI-RVDGNDVLAVY 204 (293)
T ss_pred ------------H-------------------h--CCccH----------------HHHHHhCCCCEE-EECCCCHHHHH
Confidence 0 0 00122 334899999987 89999999988
Q ss_pred HHHHHhhcC--CCCCcEEEEEEecCCCCCCh
Q 003948 408 TIFQRVKEM--PAPGPVLIHVVTEKGKGYPP 436 (784)
Q Consensus 408 ~al~~ak~~--~~~~P~lI~v~T~kG~G~~~ 436 (784)
++++++.+. ..++|++|++.|.+..|++.
T Consensus 205 ~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~ 235 (293)
T cd02000 205 EAAKEAVERARAGGGPTLIEAVTYRLGGHST 235 (293)
T ss_pred HHHHHHHHHHHccCCCEEEEEEEeccCCCCC
Confidence 887766531 25789999999999999873
No 49
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.88 E-value=1.2e-21 Score=219.81 Aligned_cols=200 Identities=21% Similarity=0.323 Sum_probs=151.1
Q ss_pred cCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCc--hHHhHHH--HhcC---CCCCCCCCCCCccccc
Q 003948 178 TGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTM--RKTS---GLAGFPKREESVHDAF 250 (784)
Q Consensus 178 ~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~--r~~g---gl~g~~~~~e~~~~~~ 250 (784)
..|.++.+.|+.-+.+++-..+ +|.|+++. .|+.++|.+..|. ++.|.++ +..| |..|..+....+...+
T Consensus 114 i~g~~h~~~GqEA~~vg~~~aL-~~~D~v~~--~yR~h~~~La~G~~~~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~ 190 (433)
T PLN02374 114 MFGFVHLYNGQEAVSTGFIKLL-KKDDSVVS--TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL 190 (433)
T ss_pred ceeccCCCCCcHHHHHHHHHHc-CCCCEEEc--cCcChHHhhhcCCCHHHHHHHHcCCCCCCCCCCCCcCccCchhhCCC
Confidence 3488888999998888887777 45798877 8999999999996 4445554 2222 2223222222223333
Q ss_pred -CCcccchhHHHHHHHHHHHHHhC-------CCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCC-CCcCcc
Q 003948 251 -GAGHSSTSISAGLGMAVARDILG-------KNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTA 321 (784)
Q Consensus 251 -g~G~~G~~ls~AvG~AlA~~~~g-------~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~-~s~~t~ 321 (784)
+.|++|.++|.|+|+|+|.++++ +++.|+|++|||++++|++||+||+|+.|++|+++||+||++ ++.++.
T Consensus 191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~ 270 (433)
T PLN02374 191 GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 270 (433)
T ss_pred CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceee
Confidence 46899999999999999999986 488999999999999999999999999999999999999985 444332
Q ss_pred CCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCC
Q 003948 322 TLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGH 401 (784)
Q Consensus 322 ~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGh 401 (784)
.+. ...++..+ +++||+..+ .|||+
T Consensus 271 ~~t--------------------------------------~~~dia~~----------------A~a~G~~~~-~VDG~ 295 (433)
T PLN02374 271 RAT--------------------------------------SDPEIWKK----------------GPAFGMPGV-HVDGM 295 (433)
T ss_pred ecc--------------------------------------CCCCHHHH----------------HHhcCCcEE-EECCC
Confidence 211 00233333 889999987 79999
Q ss_pred CHHHHHHH----HHHhhcCCCCCcEEEEEEecCCCCCChh
Q 003948 402 NVEDLVTI----FQRVKEMPAPGPVLIHVVTEKGKGYPPA 437 (784)
Q Consensus 402 d~~~l~~a----l~~ak~~~~~~P~lI~v~T~kG~G~~~a 437 (784)
|+.++.++ ++++++ .++|++|++.|.+.+|++..
T Consensus 296 D~~av~~a~~~A~~~Ar~--g~gP~LIe~~tyR~~GHs~~ 333 (433)
T PLN02374 296 DVLKVREVAKEAIERARR--GEGPTLVECETYRFRGHSLA 333 (433)
T ss_pred CHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEecCCcCCC
Confidence 99988754 455554 57999999999999998754
No 50
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.87 E-value=5.2e-21 Score=208.34 Aligned_cols=203 Identities=24% Similarity=0.338 Sum_probs=150.8
Q ss_pred cCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCc--hHHhHHH--HhcC---CCCCCCCCCCCccccc
Q 003948 178 TGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTM--RKTS---GLAGFPKREESVHDAF 250 (784)
Q Consensus 178 ~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~--r~~g---gl~g~~~~~e~~~~~~ 250 (784)
..|+..++.|..-+.+++-..+ +|+|+++. .|+.++|.+..|. .+.|..+ |..| |..|..+....+...+
T Consensus 30 ~~~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~la~G~~~~~~~~~~~g~~~g~~~Gr~g~~h~~~~~~~~~ 106 (315)
T TIGR03182 30 IGGFCHLYIGQEAVAVGLIAAL-KPDDYVIT--SYRDHGHALARGVPPKEVMAELTGRATGCSKGKGGSMHMFDREKNFY 106 (315)
T ss_pred cccccCCCCChHHHHHHHHHhC-CCCCEEEe--chhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCchhhCcc
Confidence 4578888999998888876666 46798887 8999999999997 3344443 1111 2222222211223333
Q ss_pred -CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCC
Q 003948 251 -GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (784)
Q Consensus 251 -g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~ 329 (784)
+.|++|.++|.|+|+|+|.++++++..|+|++|||++++|.+||+||+|+.+++|+++||.||++ .+.+....
T Consensus 107 ~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~y-g~s~~~~~----- 180 (315)
T TIGR03182 107 GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLY-AMGTSVER----- 180 (315)
T ss_pred cCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCc-cccCCHHH-----
Confidence 56999999999999999999999999999999999999999999999999999999999999974 33221100
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
. . ...++. .++++||+..+ .|||+|+.++.++
T Consensus 181 ----------~-------------------~--~~~~~a----------------~~A~a~G~~~~-~Vdg~d~~av~~a 212 (315)
T TIGR03182 181 ----------S-------------------S--SVTDLY----------------KRGESFGIPGE-RVDGMDVLAVREA 212 (315)
T ss_pred ----------H-------------------h--CCcCHH----------------HHHHhCCCCEE-EECCCCHHHHHHH
Confidence 0 0 001222 34899999987 7999999988877
Q ss_pred HHHhhcC--CCCCcEEEEEEecCCCCCChh
Q 003948 410 FQRVKEM--PAPGPVLIHVVTEKGKGYPPA 437 (784)
Q Consensus 410 l~~ak~~--~~~~P~lI~v~T~kG~G~~~a 437 (784)
++++.+. ..++|++|++.|.+-.|+...
T Consensus 213 ~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 242 (315)
T TIGR03182 213 AKEAVERARSGKGPILLEMKTYRFRGHSMS 242 (315)
T ss_pred HHHHHHHHHccCCCEEEEEeCCcCCCCCCC
Confidence 7765431 257999999999999998743
No 51
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.86 E-value=4.5e-21 Score=207.44 Aligned_cols=203 Identities=23% Similarity=0.297 Sum_probs=149.2
Q ss_pred ccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCc--hHHhHHHHh-cCCCCCCCC-CC--CCc-ccc
Q 003948 177 KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTMRK-TSGLAGFPK-RE--ESV-HDA 249 (784)
Q Consensus 177 ~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~r~-~ggl~g~~~-~~--e~~-~~~ 249 (784)
+..|..+++.|...+.+++...+ +|.|+++. .|++.++.+..|. .+.|..+.. ..+.+|-.+ .. ... ...
T Consensus 21 ~~~g~~~~~~GqEa~~v~~~~~l-~~~D~v~~--~yR~~~~~la~g~~~~~~~~e~~g~~~g~~g~~~~~~~~~~~~~~~ 97 (300)
T PF00676_consen 21 GRFGFYHLSAGQEAIQVAAAAAL-RPGDWVFP--YYRDHGHALARGIDLEEIFAELLGKAKGHGGGRHPLHFSDKGLNIL 97 (300)
T ss_dssp TSSSCTT-TTTCHHHHHHHHHHS-CTTSEEEE--CSTTHHHHHHTTT-HHHHHHHHHTBTTSTTTTGCTTEEEBTTTTBE
T ss_pred CCeEEecchHHHHHHHHHHHHhc-cCCCEEEe--cccchhhhhhccccccchhHHhcCcccCCCCCccccccccccceee
Confidence 45688899999999988887777 56799887 6999999999986 344555422 122222222 11 111 122
Q ss_pred cCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCC-CCcCccCCCCCCC
Q 003948 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPAT 328 (784)
Q Consensus 250 ~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~-~s~~t~~~dg~~~ 328 (784)
.+.+++|..+|.|+|+|+|.|+++++..++|++|||+.++|.+|||||+|+.|++|+||||+||++ +|+|+..+..
T Consensus 98 ~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~--- 174 (300)
T PF00676_consen 98 GASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTA--- 174 (300)
T ss_dssp EEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCS---
T ss_pred eccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCcccccc---
Confidence 357999999999999999999999999999999999999999999999999999999999999996 4443322110
Q ss_pred CcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 329 ~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
...+. ..++++|+..+ .|||+|+.++.+
T Consensus 175 -----------------------------------~~~~~----------------~~a~~~gip~~-~VDG~D~~av~~ 202 (300)
T PF00676_consen 175 -----------------------------------SPDIA----------------DRAKGYGIPGI-RVDGNDVEAVYE 202 (300)
T ss_dssp -----------------------------------SSTSG----------------GGGGGTTSEEE-EEETTSHHHHHH
T ss_pred -----------------------------------ccchh----------------hhhhccCCcEE-EECCEeHHHHHH
Confidence 01122 23789999987 899999999998
Q ss_pred HHHHhhcC--CCCCcEEEEEEecCCCCCChh
Q 003948 409 IFQRVKEM--PAPGPVLIHVVTEKGKGYPPA 437 (784)
Q Consensus 409 al~~ak~~--~~~~P~lI~v~T~kG~G~~~a 437 (784)
++++|.+. ..++|++|++.|.+-.|+...
T Consensus 203 a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~ 233 (300)
T PF00676_consen 203 AAKEAVEYARAGKGPVLIEAVTYRLRGHSES 233 (300)
T ss_dssp HHHHHHHHHHTTT--EEEEEEE--SS-SSTT
T ss_pred HHHHHHHHHhcCCCCEEEEEeeccCCCCCCC
Confidence 87766532 368999999999999998754
No 52
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.86 E-value=1.1e-22 Score=192.11 Aligned_cols=123 Identities=33% Similarity=0.585 Sum_probs=114.9
Q ss_pred cceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHH
Q 003948 644 GKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHV 722 (784)
Q Consensus 644 gk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V 722 (784)
||+.++++|+|++|||||++++.|++|++.|+++||+++|||++|++|||++.+.++++++++++|+||+. .||||+.|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999997 79999999
Q ss_pred HHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHH
Q 003948 723 CHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 767 (784)
Q Consensus 723 ~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I 767 (784)
++++.++++.....++.++|.||.|+++| ++++++++|+|+++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 99999987743347899999999999999 999999999999987
No 53
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.85 E-value=1.2e-19 Score=199.59 Aligned_cols=194 Identities=22% Similarity=0.272 Sum_probs=146.1
Q ss_pred CCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCc--hHHhHHHHhcCCCCCCCCCCCCccccc-CCcccc
Q 003948 180 GHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTMRKTSGLAGFPKREESVHDAF-GAGHSS 256 (784)
Q Consensus 180 GH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~r~~ggl~g~~~~~e~~~~~~-g~G~~G 256 (784)
|...++.|..-+.+++-..+ +|+|+++. .|++++|.+..|. .+.|..+. |.-.|-... .....+ ++|++|
T Consensus 53 ~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~h~~~l~~G~~~~~~~ae~~--g~~~g~~~~--~~~~~~g~~~~vG 125 (341)
T TIGR03181 53 GTYAPNLGQEAAQVGSALAL-RKDDWVFP--SYRDHAAMLARGVPLVEILLYWR--GDERGSWDP--EGVNILPPNIPIG 125 (341)
T ss_pred ecccCCCChHHHHHHHHHHc-CCCCEEEc--chhhHHHHHHcCCCHHHHHHHhc--CcCcCCCCc--hhcCccCCCchHh
Confidence 67788999998888887777 46898877 8999999999997 34444441 111221111 223334 468899
Q ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCC-CCcCccCCCCCCCCcchhhH
Q 003948 257 TSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVGALSS 335 (784)
Q Consensus 257 ~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~-~s~~t~~~dg~~~~v~~l~~ 335 (784)
.++|.|+|+|+|.++.++++.|+|++|||++++|.++|+||+|+.+++|+++||.||++ ++.++..+.
T Consensus 126 ~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~----------- 194 (341)
T TIGR03181 126 TQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQT----------- 194 (341)
T ss_pred cchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhh-----------
Confidence 99999999999999999999999999999999999999999999999999999999985 222111000
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHH----
Q 003948 336 ALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ---- 411 (784)
Q Consensus 336 ~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~---- 411 (784)
-.++...++++||+.++ .|||+|..++.++++
T Consensus 195 -------------------------------------------~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~ 230 (341)
T TIGR03181 195 -------------------------------------------AAPTLAQKAIAYGIPGV-QVDGNDVLAVYAVTKEAVE 230 (341)
T ss_pred -------------------------------------------CCcCHHHHHhhCCCCEE-EECCCCHHHHHHHHHHHHH
Confidence 00122334899999987 799999987666554
Q ss_pred HhhcCCCCCcEEEEEEecCCCCCChh
Q 003948 412 RVKEMPAPGPVLIHVVTEKGKGYPPA 437 (784)
Q Consensus 412 ~ak~~~~~~P~lI~v~T~kG~G~~~a 437 (784)
++++ .++|++|++.|.+-.|++..
T Consensus 231 ~a~~--~~gP~lIev~t~R~~gH~~~ 254 (341)
T TIGR03181 231 RARS--GGGPTLIEAVTYRLGPHTTA 254 (341)
T ss_pred HHHc--CCCCEEEEEEeecCCCCCCC
Confidence 4443 57999999999999887653
No 54
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.82 E-value=1.6e-18 Score=191.33 Aligned_cols=253 Identities=16% Similarity=0.123 Sum_probs=184.2
Q ss_pred hhHHhCCCCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCcC
Q 003948 500 YFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHC 578 (784)
Q Consensus 500 ~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~G~dG~THq 578 (784)
.+.+++...|++ .-+|.+++++|.|+|+.|.|.+++|.++++..+++++ ..++..++|++++. .|+|. .-|.|+.
T Consensus 42 ~~~~~~~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~e~P~v~v~v~R~~p--~~g~t~~ 117 (352)
T PRK07119 42 RRLPEVGGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGISLKQEGI-SYLAGAELPCVIVNIMRGGP--GLGNIQP 117 (352)
T ss_pred HHHHHhCCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcchHHHHHHHH-HHHHHccCCEEEEEeccCCC--CCCCCcc
Confidence 334455667888 8999999999999999999999999999998999997 77899999977776 55553 2245777
Q ss_pred chhhHhHhcc-----CCCcEEEecCCHHHHHHHHHHHHHh---CCCCeEEEcCCCC---CccccCCC------CCCCCCc
Q 003948 579 GAFDVTFMSC-----LPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGN---GIGAVLPP------NNKGTPL 641 (784)
Q Consensus 579 ~~~dla~lr~-----iPn~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl~r~~---~~~~~~p~------~~~~~~~ 641 (784)
...|+.+.+. --++.+++|+|++|++++...|++. ..-|++++.+... ...+.+|+ +..+...
T Consensus 118 eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~ 197 (352)
T PRK07119 118 SQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAV 197 (352)
T ss_pred hhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCcc
Confidence 7778765431 2248899999999999999999985 4459999875321 00111111 0000000
Q ss_pred c-cc--------------------------ce----------eEe-eeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEE
Q 003948 642 E-IG--------------------------KG----------RIL-MEGDRVAILGYGSIVQQCVLAANMLKSQDISVTV 683 (784)
Q Consensus 642 ~-ig--------------------------k~----------~vl-reG~dvtIva~Gs~v~~aleAae~L~~~GI~v~V 683 (784)
+ .. +. ... -++.|++||++|+++..+++|++.|+++|++++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~v 277 (352)
T PRK07119 198 TGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIKVGL 277 (352)
T ss_pred CCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEE
Confidence 0 00 00 001 1367999999999999999999999999999999
Q ss_pred eeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCC
Q 003948 684 ADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLS 763 (784)
Q Consensus 684 Id~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~ 763 (784)
+++++++|||.+.|++.++++++|+|+|++ .|.+..+|...+... .++..++..+ | .-++
T Consensus 278 i~~~~l~Pfp~~~i~~~l~~~k~VivvE~n-~g~l~~ei~~~~~~~------~~~~~i~k~~-----G--------~~~~ 337 (352)
T PRK07119 278 FRPITLWPFPEKALEELADKGKGFLSVEMS-MGQMVEDVRLAVNGK------KPVEFYGRMG-----G--------MVPT 337 (352)
T ss_pred EeeceecCCCHHHHHHHHhCCCEEEEEeCC-ccHHHHHHHHHhCCC------CceeEEeccC-----C--------EeCC
Confidence 999999999999999999999999999998 477887777544210 1222222211 1 1268
Q ss_pred HHHHHHHHHHHhc
Q 003948 764 SRHISATVLSLLG 776 (784)
Q Consensus 764 ~~~I~~~i~~ll~ 776 (784)
+++|.+.++++++
T Consensus 338 ~~~i~~~~~~~~~ 350 (352)
T PRK07119 338 PEEILEKIKEILG 350 (352)
T ss_pred HHHHHHHHHHHhc
Confidence 8999999999874
No 55
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.82 E-value=7.9e-19 Score=206.83 Aligned_cols=245 Identities=19% Similarity=0.226 Sum_probs=186.0
Q ss_pred CCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhc--CCCCEEEEe-eCCCCCCCCCCCcCchhhH
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDL--QKLPVRFAM-DRAGLVGADGPTHCGAFDV 583 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~--~~lpV~~v~-~~~G~~G~dG~THq~~~dl 583 (784)
+-++....+|.+++.+|.|+|+.|.|.+++|.++.+..+.|++.. +++ +++|++++. ++.| .++|+....|.
T Consensus 46 ~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~Gl~~~~e~l~~-~~~~g~~~~iV~~~~~~~g----p~~~~~~q~d~ 120 (595)
T TIGR03336 46 GVYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVGLNVAADPLMT-LAYTGVKGGLVVVVADDPS----MHSSQNEQDTR 120 (595)
T ss_pred cEEEEECcCHHHHHHHHHHHHhcCcceEEEccCCchhhhHHHhhh-hhhhcCcCceEEEEccCCC----CccchhhHhHH
Confidence 456778889999999999999999999999999999999999855 553 467766665 4433 24777777777
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh---CCCCeEEEcCCCCC---ccccCCCC-----CCCCCccc---------
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGNG---IGAVLPPN-----NKGTPLEI--------- 643 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl~r~~~---~~~~~p~~-----~~~~~~~i--------- 643 (784)
.+.+. .++.|++|+|++|+.++...|++. ..-|++++++.... ..+.+++. ..++..+.
T Consensus 121 ~~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (595)
T TIGR03336 121 HYAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAI 199 (595)
T ss_pred HHHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchh
Confidence 66665 588899999999999999999984 55699998753210 01111110 00000000
Q ss_pred ---------c----------c--e-eEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh
Q 003948 644 ---------G----------K--G-RILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA 701 (784)
Q Consensus 644 ---------g----------k--~-~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~ 701 (784)
. . . .+..++.|++||++|++++.+++|++.| |++++|++++++||||++.|++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~ 276 (595)
T TIGR03336 200 ARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFL 276 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHH
Confidence 0 0 0 1112357999999999999999988765 999999999999999999999999
Q ss_pred ccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 003948 702 NEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSL 774 (784)
Q Consensus 702 ~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~l 774 (784)
++++.|||+||+. +++++.+..++.+.+ .+++++|++|.|++ +..+||++.|.++++++
T Consensus 277 ~~~~~vivvEe~~-~~~~~~~~~~~~~~~-----~~v~~~G~~d~fi~--------~~~~Ld~~~i~~~i~~~ 335 (595)
T TIGR03336 277 SGVEEVLVVEELE-PVVEEQVKALAGTAG-----LNIKVHGKEDGFLP--------REGELNPDIVVNALAKF 335 (595)
T ss_pred hcCCeEEEEeCCc-cHHHHHHHHHHHhcC-----CCeEEecccCCccC--------cccCcCHHHHHHHHHHh
Confidence 9999999999997 566666655554433 37889999999998 46889999999999886
No 56
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.80 E-value=7.7e-19 Score=180.48 Aligned_cols=167 Identities=22% Similarity=0.279 Sum_probs=125.5
Q ss_pred CCchH---HHHHHHhCc--------h---HHhH-HHHh---cCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHH
Q 003948 210 VGHQA---YVHKILTGR--------R---SRMN-TMRK---TSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDI 271 (784)
Q Consensus 210 ~GH~~---y~~~~l~G~--------~---~~l~-~~r~---~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~ 271 (784)
.||.+ |+.++|.|. + +.|. .||| .||+++||.. +.++....+|++|++||.|+|+|+
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~---- 76 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAVF---- 76 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCCCCCCCcc-cCCCeeecccchhhHHHHHHHhhh----
Confidence 58887 788888882 2 1243 4566 4678999986 678888999999999999999974
Q ss_pred hCCCCeEEEEEcCCcccchhh---HHHHHHHhhcC-CCEEEEEECCCC-CCcCccCCCCCCCCcchhhHHHHHhhhhhhH
Q 003948 272 LGKNNNVISVIGDGAMTAGQA---YEAMNNAGFLD-ANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNF 346 (784)
Q Consensus 272 ~g~~~~Vv~viGDGal~eG~~---~EAln~A~~~~-~nlivIv~dN~~-~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~ 346 (784)
.+++.+|+|++||||+++|.. ||+.+++...+ .||+.|+++|++ ++.||... . +
T Consensus 77 d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~--~------~------------- 135 (227)
T cd02011 77 DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILA--R------I------------- 135 (227)
T ss_pred cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCcccc--c------c-------------
Confidence 567899999999999999995 99999988765 999999999995 44443211 0 0
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhc-----------
Q 003948 347 RKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE----------- 415 (784)
Q Consensus 347 ~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~----------- 415 (784)
+.+++.++ |++|||..+ .|||||++++.++++++.+
T Consensus 136 ----------------~~e~l~~~----------------~~~yG~~~~-~VDG~D~~av~~~~a~a~~~~~~~i~~~~~ 182 (227)
T cd02011 136 ----------------SHEELEAL----------------FRGYGYEPY-FVEGDDPETMHQAMAATLDWAIEEIKAIQK 182 (227)
T ss_pred ----------------CchhHHHH----------------HHhCCCceE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12456665 999999987 6899999887665542221
Q ss_pred ----C-CCCCcE--EEEEEecCCCCCC
Q 003948 416 ----M-PAPGPV--LIHVVTEKGKGYP 435 (784)
Q Consensus 416 ----~-~~~~P~--lI~v~T~kG~G~~ 435 (784)
. ...+|. +|.++|.||+.-|
T Consensus 183 ~~~~~~~~~~~~wp~~~~~~~kg~~~p 209 (227)
T cd02011 183 RAREGGDASRPRWPMIVLRTPKGWTGP 209 (227)
T ss_pred HHHhCCCCCCCCCCEEEEeCCCCCCCC
Confidence 1 123563 8999999999655
No 57
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.78 E-value=3.8e-17 Score=181.87 Aligned_cols=247 Identities=17% Similarity=0.209 Sum_probs=176.3
Q ss_pred hCCCCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC-CCCCCCCcCchh
Q 003948 504 RFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL-VGADGPTHCGAF 581 (784)
Q Consensus 504 ~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~-~G~dG~THq~~~ 581 (784)
+....|+.+- +|.+++++|.|+|+.|.|.+++|.++.+..+.+++ ..++..++|++++. +|+|. +| -||++...
T Consensus 46 ~~~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~lm~E~~-~~a~~~e~P~Viv~~~R~gp~tg--~p~~~~q~ 121 (376)
T PRK08659 46 KVGGVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFSLMQENI-GYAAMTETPCVIVNVQRGGPSTG--QPTKPAQG 121 (376)
T ss_pred hhCCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHHHHHHHH-HHHHHcCCCEEEEEeecCCCCCC--CCCCcCcH
Confidence 3446788887 99999999999999999999999999888888987 56777899977776 67764 34 36777666
Q ss_pred hHhHhcc----CCCcEEEecCCHHHHHHHHHHHHHh---CCCCeEEEcCCC------CCc--cc-cC-------CCC---
Q 003948 582 DVTFMSC----LPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG------NGI--GA-VL-------PPN--- 635 (784)
Q Consensus 582 dla~lr~----iPn~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl~r~------~~~--~~-~~-------p~~--- 635 (784)
|+...+. --++.|++|+|++|+.++...|++. .+.|++++.+.. .+. .. .+ +..
T Consensus 122 D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~ 201 (376)
T PRK08659 122 DMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPE 201 (376)
T ss_pred HHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCcc
Confidence 7655551 1136799999999999999999984 446999887421 100 00 00 000
Q ss_pred -CCCCC-----cc----ccce--------------------------------------------eEee-eCCcEEEEEe
Q 003948 636 -NKGTP-----LE----IGKG--------------------------------------------RILM-EGDRVAILGY 660 (784)
Q Consensus 636 -~~~~~-----~~----igk~--------------------------------------------~vlr-eG~dvtIva~ 660 (784)
..++. ++ .+.+ .... ++.|++||++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~ 281 (376)
T PRK08659 202 AYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAY 281 (376)
T ss_pred ccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEe
Confidence 00000 00 0100 0011 3679999999
Q ss_pred chhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEE
Q 003948 661 GSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRS 740 (784)
Q Consensus 661 Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~ 740 (784)
|++...+++|++.|+++|++++++++++++|||.+.|++.+++++.|+|||++ .|.+..++...+... .+...
T Consensus 282 Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~-~g~l~~el~~~~~~~------~~~~~ 354 (376)
T PRK08659 282 GSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN-LGQMSLEVERVVNGR------AKVEG 354 (376)
T ss_pred CccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC-HHHHHHHHHHHhCCC------CCeeE
Confidence 99999999999999999999999999999999999999999999999999999 576666666554211 11222
Q ss_pred eecCcccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 003948 741 MVLPDRYIDHGSPADQLEESGLSSRHISATVLSL 774 (784)
Q Consensus 741 lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~l 774 (784)
++.. .|. -+++++|.+.++++
T Consensus 355 i~~~-----~G~--------~~~~~ei~~~~~~~ 375 (376)
T PRK08659 355 INKI-----GGE--------LITPEEILEKIKEV 375 (376)
T ss_pred Eecc-----CCC--------cCCHHHHHHHHHhh
Confidence 2211 121 26889999988764
No 58
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.77 E-value=2.5e-18 Score=180.13 Aligned_cols=199 Identities=24% Similarity=0.333 Sum_probs=152.4
Q ss_pred cCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCc--hHHhHHH--HhcC---CCCCCCCCCCCccccc
Q 003948 178 TGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTM--RKTS---GLAGFPKREESVHDAF 250 (784)
Q Consensus 178 ~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~--r~~g---gl~g~~~~~e~~~~~~ 250 (784)
.-|..+.+-|+..+.+++-..+ ++.|-+|. ..+|+++.+++|. ++.|.++ ||.| |..|..+.- +. ..+
T Consensus 87 IRGFCHLy~GQEAvavGme~ai-t~~D~iIt--sYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy-~k-~Fy 161 (394)
T KOG0225|consen 87 IRGFCHLYDGQEAVAVGMEAAI-TKSDSIIT--SYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMY-AK-NFY 161 (394)
T ss_pred hceeeeecccHHHHHHHHHHhc-cCCCceEE--EeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeee-cc-ccc
Confidence 4688888999999999987666 56899998 6789999899996 5777776 5655 344443321 11 123
Q ss_pred -CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCC
Q 003948 251 -GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (784)
Q Consensus 251 -g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~ 329 (784)
|.|.+|.++|.+.|+|+|.++++++..++++.|||+.++||+|||+|+|..|++|+||||+||++ .+-|...
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~y-GMGTs~~------ 234 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHY-GMGTSAE------ 234 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCC-ccCcchh------
Confidence 68999999999999999999999999999999999999999999999999999999999999996 2222110
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
...+--+-|.||-+ +..+ .|||.|+-++.+|
T Consensus 235 ------------------------------------Rasa~teyykRG~y------------iPGl-~VdGmdvlaVr~a 265 (394)
T KOG0225|consen 235 ------------------------------------RASASTEYYKRGDY------------IPGL-KVDGMDVLAVREA 265 (394)
T ss_pred ------------------------------------hhhcChHHHhccCC------------CCce-EECCcchhhHHHH
Confidence 01111122333321 2233 5899999999999
Q ss_pred HHHhhcC--CCCCcEEEEEEecCCCCCChh
Q 003948 410 FQRVKEM--PAPGPVLIHVVTEKGKGYPPA 437 (784)
Q Consensus 410 l~~ak~~--~~~~P~lI~v~T~kG~G~~~a 437 (784)
.+.|++. ++.+|.++++.|.+-.|++..
T Consensus 266 ~KfA~~~~~~g~GPilmE~~TYRy~GHSmS 295 (394)
T KOG0225|consen 266 TKFAKKYALEGKGPILMEMDTYRYHGHSMS 295 (394)
T ss_pred HHHHHHHHhcCCCCEEEEEeeeeecccccC
Confidence 9988764 458999999999998888754
No 59
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.76 E-value=3.2e-16 Score=176.30 Aligned_cols=254 Identities=17% Similarity=0.156 Sum_probs=183.1
Q ss_pred CCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCcCchhhHhH
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFDVTF 585 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~G~dG~THq~~~dla~ 585 (784)
..|+.+ =+|.+++++|.|+|+.|.|.+++|.++.+..+.|.+ ..++..++|++++. .|+|.. .-+++.+..|+..
T Consensus 57 ~~~vq~-E~E~~A~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aa~~~~P~V~~~~~R~~~~--~~~i~~d~~D~~~ 132 (407)
T PRK09622 57 GEFVMV-ESEHAAMSACVGAAAAGGRVATATSSQGLALMVEVL-YQASGMRLPIVLNLVNRALAA--PLNVNGDHSDMYL 132 (407)
T ss_pred cEEEee-ccHHHHHHHHHHHHhhCcCEEeecCcchHHHHhhHH-HHHHHhhCCEEEEEeccccCC--CcCCCchHHHHHH
Confidence 346654 399999999999999999999999999988999997 67899999977776 444422 3688888888877
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHHhC-----CCCeEEEcCCCC----CccccCCCC---------CCCC--------
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAVID-----DRPSCFRFPRGN----GIGAVLPPN---------NKGT-------- 639 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~~~-----~~Pv~irl~r~~----~~~~~~p~~---------~~~~-------- 639 (784)
.|. .++.+++|+|++|+.++...|++.. ..|++++++... ...++.|+. ++.+
T Consensus 133 ~r~-~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (407)
T PRK09622 133 SRD-SGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDK 211 (407)
T ss_pred Hhc-CCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCC
Confidence 764 7799999999999999999999852 569998875331 000111000 0000
Q ss_pred C--ccc------------------------------------cceeE-ee----eCCcEEEEEechhHHHHHHHHHHHhc
Q 003948 640 P--LEI------------------------------------GKGRI-LM----EGDRVAILGYGSIVQQCVLAANMLKS 676 (784)
Q Consensus 640 ~--~~i------------------------------------gk~~v-lr----eG~dvtIva~Gs~v~~aleAae~L~~ 676 (784)
+ ... ++.+. .. ++.|++||++|+++..+++|++.|++
T Consensus 212 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~ 291 (407)
T PRK09622 212 PVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRK 291 (407)
T ss_pred CccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHh
Confidence 0 000 00000 00 35789999999999999999999999
Q ss_pred CCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCC-cceEEeecCcccccCCCHH
Q 003948 677 QDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGP-LKLRSMVLPDRYIDHGSPA 754 (784)
Q Consensus 677 ~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~-~~~~~lg~~d~f~~~g~~~ 754 (784)
+|++++|+++++++|||.+.+.+.+++++.|+|+|++. .||+|..+.+.+..-.....+ .+. . ....|+..|
T Consensus 292 ~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~al~~~~~~~~~~-v--~~~~~g~gG--- 365 (407)
T PRK09622 292 EGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSAVYQTQGTKHPV-V--SNYIYGLGG--- 365 (407)
T ss_pred CCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHHhccCcCCCce-E--eeeEECCCC---
Confidence 99999999999999999999999999999999999997 689988666655432111000 111 0 112233322
Q ss_pred HHHHHcCCCHHHHHHHHHHHhc
Q 003948 755 DQLEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 755 elle~~gl~~~~I~~~i~~ll~ 776 (784)
..+++++|.+.++++..
T Consensus 366 -----~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 366 -----RDMTIAHLCEIFEELNE 382 (407)
T ss_pred -----CCCCHHHHHHHHHHHHh
Confidence 13688999998887764
No 60
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.74 E-value=2.1e-16 Score=175.60 Aligned_cols=244 Identities=18% Similarity=0.203 Sum_probs=176.3
Q ss_pred CCCCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC-CCCCCCCcCchhh
Q 003948 505 FPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL-VGADGPTHCGAFD 582 (784)
Q Consensus 505 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~-~G~dG~THq~~~d 582 (784)
+...++.+ =+|.+++++|.|+|+.|.|.+++|.++.+..+.+++ ..++..++|++++. .|+|. +| -||.....|
T Consensus 46 ~g~~~vq~-E~E~aA~~~a~GAs~aG~Ra~taTSg~G~~lm~E~~-~~a~~~e~P~V~~~~~R~GpstG--~p~~~~q~D 121 (375)
T PRK09627 46 CGGTFIQM-EDEISGISVALGASMSGVKSMTASSGPGISLKAEQI-GLGFIAEIPLVIVNVMRGGPSTG--LPTRVAQGD 121 (375)
T ss_pred cCCEEEEc-CCHHHHHHHHHHHHhhCCCEEeecCCchHHHHhhHH-HHHHhccCCEEEEEeccCCCcCC--CCCccchHH
Confidence 33445544 399999999999999999999999999888888887 67788999988866 66675 33 377777677
Q ss_pred HhHhc-----cCCCcEEEecCCHHHHHHHHHHHHHh---CCCCeEEEcCCCC---CccccCCC----------------C
Q 003948 583 VTFMS-----CLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGN---GIGAVLPP----------------N 635 (784)
Q Consensus 583 la~lr-----~iPn~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl~r~~---~~~~~~p~----------------~ 635 (784)
+...+ ..|. +|++|+|++|+.++...|++. ...|++++.+... ...+.+|+ .
T Consensus 122 ~~~~~~~~hgd~~~-ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~ 200 (375)
T PRK09627 122 VNQAKNPTHGDFKS-IALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGD 200 (375)
T ss_pred HHHHhcCCCCCcCc-EEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCC
Confidence 76666 4444 499999999999999999984 4559998875311 00000000 0
Q ss_pred ---CCCCCcc------c-----------------------------------------------cceeEee-eCCcEEEE
Q 003948 636 ---NKGTPLE------I-----------------------------------------------GKGRILM-EGDRVAIL 658 (784)
Q Consensus 636 ---~~~~~~~------i-----------------------------------------------gk~~vlr-eG~dvtIv 658 (784)
+..+.+. + ....... ++.|++||
T Consensus 201 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV 280 (375)
T PRK09627 201 KKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILII 280 (375)
T ss_pred cccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEE
Confidence 0001110 0 0000001 24689999
Q ss_pred EechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcce
Q 003948 659 GYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKL 738 (784)
Q Consensus 659 a~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~ 738 (784)
+||+....+.+|++.|+++|++++++.+++++|||.+.+++.+++.+.|+|+|++. |.|..+|...+... ++
T Consensus 281 ~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~-Gql~~~v~~~~~~~-------~~ 352 (375)
T PRK09627 281 AYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM-GQYLEEIERVMQRD-------DF 352 (375)
T ss_pred EeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh-HHHHHHHHHHhCCC-------Cc
Confidence 99999999999999999999999999999999999999999999999999999997 88888887766321 11
Q ss_pred EEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 003948 739 RSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSL 774 (784)
Q Consensus 739 ~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~l 774 (784)
..++. + .|. -+++++|.+.++++
T Consensus 353 ~~i~~---~--~G~--------~~~~~~i~~~i~~~ 375 (375)
T PRK09627 353 HFLGK---A--NGR--------PISPSEIIAKVKEL 375 (375)
T ss_pred eEEee---e--CCC--------cCCHHHHHHHHHhC
Confidence 11111 1 122 26889999888764
No 61
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.70 E-value=9e-15 Score=163.20 Aligned_cols=204 Identities=17% Similarity=0.195 Sum_probs=158.9
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCcCchhhHhHhccCCC
Q 003948 513 GIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFDVTFMSCLPN 591 (784)
Q Consensus 513 GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~G~dG~THq~~~dla~lr~iPn 591 (784)
.=+|++++++|.|+|+.|.|.+++|.++.+..+.|++ ..++..++|++++. .|+|. ..+++|+...|+.+.+. .+
T Consensus 55 ~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl~lm~E~l-~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~~~d-~g 130 (390)
T PRK08366 55 VESEHSAMAACIGASAAGARAFTATSAQGLALMHEML-HWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLAQRD-TG 130 (390)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeCcccHHHHhhHH-HHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHHHhh-cC
Confidence 3599999999999999999999999999988999997 57889999988776 66664 24689888888777665 58
Q ss_pred cEEEecCCHHHHHHHHHHHHHh---CCCCeEEEcCCCCC----cccc----------CCCCCC-------CCCc------
Q 003948 592 MVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGNG----IGAV----------LPPNNK-------GTPL------ 641 (784)
Q Consensus 592 ~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl~r~~~----~~~~----------~p~~~~-------~~~~------ 641 (784)
+.+++|+|++|+.++...|++. ..-|++++.+.... ..+. +|+... +.+.
T Consensus 131 ~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~ 210 (390)
T PRK08366 131 WMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALA 210 (390)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCC
Confidence 8999999999999999999984 45599988743210 0000 110000 0000
Q ss_pred ----------c----------------------ccceeE--ee----eCCcEEEEEechhHHHHHHHHHHHhcCCCcEEE
Q 003948 642 ----------E----------------------IGKGRI--LM----EGDRVAILGYGSIVQQCVLAANMLKSQDISVTV 683 (784)
Q Consensus 642 ----------~----------------------igk~~v--lr----eG~dvtIva~Gs~v~~aleAae~L~~~GI~v~V 683 (784)
. +|+.+. .. ++.|++||++|+....+.+|++.|+++|+++++
T Consensus 211 ~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~ 290 (390)
T PRK08366 211 TPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGY 290 (390)
T ss_pred CCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceee
Confidence 0 011111 11 356899999999999999999999999999999
Q ss_pred eeccccCCCcHHHHHHHhccCCeEEEEcCCCc-CCcHH
Q 003948 684 ADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 720 (784)
Q Consensus 684 Id~~slkPlD~e~i~~~~~~~~~vVvvEe~~~-gG~gs 720 (784)
+.+++++|||.+.+++.+++.+.|+++|.+.. |++|.
T Consensus 291 l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~ 328 (390)
T PRK08366 291 AKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGI 328 (390)
T ss_pred EEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccH
Confidence 99999999999999999999999999999975 77553
No 62
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.68 E-value=3.8e-16 Score=164.51 Aligned_cols=203 Identities=16% Similarity=0.201 Sum_probs=140.5
Q ss_pred cCCCCCCCCcHHHHHHHHhhccCCC----CcEEEeCCCchHHHHHHH--hCc--hHHhHHHHhcCC----------CC--
Q 003948 178 TGGHLSANLGVVELTLALHRVFNTP----DDKIIWDVGHQAYVHKIL--TGR--RSRMNTMRKTSG----------LA-- 237 (784)
Q Consensus 178 ~gGH~gsslg~~el~vaL~~~~~~p----~D~~i~s~GH~~y~~~~l--~G~--~~~l~~~r~~gg----------l~-- 237 (784)
+.++++ .-|+.-+.++|-..++.. -+.+|+.-.|+.-...+. .|. .+.|.+|..... ..
T Consensus 11 ~~krfs-~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yH 89 (265)
T cd02016 11 GQKRFG-LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYH 89 (265)
T ss_pred CCeEEE-ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcC
Confidence 345664 778877888887776532 245667677888555444 564 445555533111 11
Q ss_pred -CCCCCCCCc-------ccccCCcccchhHHHHHHHHHHHHHhC-----CCCeEEEEEcCCcc-cchhhHHHHHHHhhcC
Q 003948 238 -GFPKREESV-------HDAFGAGHSSTSISAGLGMAVARDILG-----KNNNVISVIGDGAM-TAGQAYEAMNNAGFLD 303 (784)
Q Consensus 238 -g~~~~~e~~-------~~~~g~G~~G~~ls~AvG~AlA~~~~g-----~~~~Vv~viGDGal-~eG~~~EAln~A~~~~ 303 (784)
|++...+.. ......+|+|..+|.|+|+|+|.++++ ++..++|++|||++ .+|.+||+||+|+.++
T Consensus 90 lg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~ 169 (265)
T cd02016 90 LGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPG 169 (265)
T ss_pred CccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcC
Confidence 111111111 011235789999999999999999998 47788999999996 6999999999999999
Q ss_pred CC---EEEEEECCCC-CCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhcc
Q 003948 304 AN---LIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI 379 (784)
Q Consensus 304 ~n---livIv~dN~~-~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~ 379 (784)
.| +|+||+||++ +++|...+ . ....+.++
T Consensus 170 lp~gg~ifvveNNq~g~sT~~~~~--~------------------------------------~~~~~~~~--------- 202 (265)
T cd02016 170 YTTGGTIHIVVNNQIGFTTDPRDS--R------------------------------------SSPYCTDV--------- 202 (265)
T ss_pred CCCCCEEEEEEeCCEEEEecHHHh--c------------------------------------ccccHHHH---------
Confidence 88 9999999995 33222111 0 00122333
Q ss_pred CCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEecCCCCCCh
Q 003948 380 SASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVTEKGKGYPP 436 (784)
Q Consensus 380 ~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~--~~~~P~lI~v~T~kG~G~~~ 436 (784)
++++|+..+ .|||+|++++.++.++|.+. ..++|++|++.|.+-+|+..
T Consensus 203 -------a~~~gip~~-~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse 253 (265)
T cd02016 203 -------AKMIGAPIF-HVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNE 253 (265)
T ss_pred -------HeecCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCC
Confidence 788999877 89999999999888766542 36799999999999999864
No 63
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.66 E-value=3.3e-14 Score=159.09 Aligned_cols=246 Identities=16% Similarity=0.161 Sum_probs=177.3
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCc
Q 003948 513 GIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNM 592 (784)
Q Consensus 513 GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~ 592 (784)
.=+|++++++|.|+|+.|.|.+++|.++.+..+.|++ ..++..++|++++....++ +...++|++..|+...|. -++
T Consensus 56 ~EsE~aA~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aag~~lP~V~vv~~R~~-~~p~~i~~d~~D~~~~rd-~g~ 132 (394)
T PRK08367 56 VESEHSAISACVGASAAGVRTFTATASQGLALMHEVL-FIAAGMRLPIVMAIGNRAL-SAPINIWNDWQDTISQRD-TGW 132 (394)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeccchHHHHhhHH-HHHHHccCCEEEEECCCCC-CCCCCcCcchHHHHhccc-cCe
Confidence 4599999999999999999999999999999999997 6789999998888743342 333467877778766665 458
Q ss_pred EEEecCCHHHHHHHHHHHHHhCC-----CCeEEEcCCCC----CccccCCCC---------CCC--------CCcc----
Q 003948 593 VVMAPSDEAELMHMVATAAVIDD-----RPSCFRFPRGN----GIGAVLPPN---------NKG--------TPLE---- 642 (784)
Q Consensus 593 ~V~~Psd~~E~~~~l~~A~~~~~-----~Pv~irl~r~~----~~~~~~p~~---------~~~--------~~~~---- 642 (784)
.++.|+|.+|+.++...|++..+ .|++++++... ..++.+|+. ++. .+..
T Consensus 133 ~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~ 212 (394)
T PRK08367 133 MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGAL 212 (394)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCCC
Confidence 88999999999999999998654 49998875420 001111100 000 0000
Q ss_pred ----------------------------------cccee-Eee----eCCcEEEEEechhHHHHHHHHHHHhcCCCcEEE
Q 003948 643 ----------------------------------IGKGR-ILM----EGDRVAILGYGSIVQQCVLAANMLKSQDISVTV 683 (784)
Q Consensus 643 ----------------------------------igk~~-vlr----eG~dvtIva~Gs~v~~aleAae~L~~~GI~v~V 683 (784)
.|+.+ .+. ++.|++||++|+....+.+|++.|+++|+++++
T Consensus 213 ~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGl 292 (394)
T PRK08367 213 AFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGA 292 (394)
T ss_pred CCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCccee
Confidence 11111 111 357999999999999999999999999999999
Q ss_pred eeccccCCCcHHHHHHHhccCCeEEEEcCCCc----CCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHH
Q 003948 684 ADARFCKPLDTDLIRQLANEHEILITVEEGSV----GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEE 759 (784)
Q Consensus 684 Id~~slkPlD~e~i~~~~~~~~~vVvvEe~~~----gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~ 759 (784)
+.+++++|||.+.+++.+++.+.|+|+|.+.. |.+..+|...|...+ ...++. +. .++-.|
T Consensus 293 lri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~~~---~~~~v~--~~--~~glgg-------- 357 (394)
T PRK08367 293 AKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASAALVNES---EKPKIL--DF--IIGLGG-------- 357 (394)
T ss_pred EEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhccC---CCCeEE--EE--EeCCCC--------
Confidence 99999999999999999999999999999863 556667776664221 111211 11 111122
Q ss_pred cCCCHHHHHHHHHHHhc
Q 003948 760 SGLSSRHISATVLSLLG 776 (784)
Q Consensus 760 ~gl~~~~I~~~i~~ll~ 776 (784)
-.+++++|.+.+.++++
T Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (394)
T PRK08367 358 RDVTFKQLDEALEIAEK 374 (394)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 23788999988887654
No 64
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.65 E-value=6.4e-15 Score=172.25 Aligned_cols=218 Identities=18% Similarity=0.189 Sum_probs=167.2
Q ss_pred CCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCcCchhhHhH
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFDVTF 585 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~G~dG~THq~~~dla~ 585 (784)
+-.+-..-+|.+++++|.|+|+.|.|.+++|.++.+..+.|.+ ..++..++|++++. +|+|. +..-+|+....|+.+
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~~~P~Vi~~~~R~gp-stg~~t~~eq~D~~~ 314 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFALMTEAL-GLAGMTETPLVIVDVQRGGP-STGLPTKTEQSDLLF 314 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChhHhHHHH-hHHHhccCCEEEEEcccCCC-CCCCCCCccHHHHHH
Confidence 4566667899999999999999999999999999888888987 67788999988776 67765 223468888888777
Q ss_pred hccCC----CcEEEecCCHHHHHHHHHHHHHh---CCCCeEEEcCCCCC---ccccCCC-----------------CCCC
Q 003948 586 MSCLP----NMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGNG---IGAVLPP-----------------NNKG 638 (784)
Q Consensus 586 lr~iP----n~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl~r~~~---~~~~~p~-----------------~~~~ 638 (784)
.+.-. ++.|++|+|++|+.++...|++. ...|++++.+.... ..+++|+ .+..
T Consensus 315 ~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (562)
T TIGR03710 315 ALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKR 394 (562)
T ss_pred HhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCC
Confidence 66422 38899999999999999999984 45599988742210 0000000 0000
Q ss_pred CC--------cc-cc-----------------------------------c----------eeEee-eCCcEEEEEechh
Q 003948 639 TP--------LE-IG-----------------------------------K----------GRILM-EGDRVAILGYGSI 663 (784)
Q Consensus 639 ~~--------~~-ig-----------------------------------k----------~~vlr-eG~dvtIva~Gs~ 663 (784)
+. .. .+ | .+... ++.+++||+||+.
T Consensus 395 ~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~ 474 (562)
T TIGR03710 395 YELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGST 474 (562)
T ss_pred CCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCCC
Confidence 00 00 00 0 00001 2468999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHH
Q 003948 664 VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFL 726 (784)
Q Consensus 664 v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l 726 (784)
...+.+|++.|+++|++++++.+++++|||.+.+++.+++.+.|+|+|++..|.+..+|...+
T Consensus 475 ~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~~Gql~~~v~~~~ 537 (562)
T TIGR03710 475 YGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNATGQLAKLLRAET 537 (562)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccChhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999997898888887766
No 65
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.58 E-value=2.9e-14 Score=140.75 Aligned_cols=164 Identities=23% Similarity=0.272 Sum_probs=109.9
Q ss_pred HHhhccCCCCcEEEeCCCchHHHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhC
Q 003948 194 ALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG 273 (784)
Q Consensus 194 aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g 273 (784)
.|...+ .++|.++.|.|+.......+... .++ .......+.|++|.++|.|+|++++.+
T Consensus 5 ~l~~~~-~~~~~i~~d~g~~~~~~~~~~~~----------------~~~-~~~~~~~~~g~~G~~~~~a~Gaa~a~~--- 63 (168)
T cd00568 5 ALRAAL-PEDAIVVNDAGNSAYWAYRYLPL----------------RRG-RRFLTSTGFGAMGYGLPAAIGAALAAP--- 63 (168)
T ss_pred HHHHHC-CCCCEEEeCCcHHHHHHHHheee----------------CCC-CcEEeCCCchhhhhhHHHHHHHHHhCC---
Confidence 343334 45788999999876433211110 000 112233477999999999999999876
Q ss_pred CCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHH
Q 003948 274 KNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAA 353 (784)
Q Consensus 274 ~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~ 353 (784)
+++|+|++|||++++ .+|++++|.++++|+++||.||+.... . +..
T Consensus 64 -~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~--------------~----------------~~~- 109 (168)
T cd00568 64 -DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGT--------------I----------------RMH- 109 (168)
T ss_pred -CCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHH--------------H----------------HHH-
Confidence 789999999999995 779999999999999999999985221 0 000
Q ss_pred HHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 003948 354 KSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVT 428 (784)
Q Consensus 354 ~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T 428 (784)
+.............-..+...+++++|++++ .++ +++++.++++++++ .++|++|+++|
T Consensus 110 -----------~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~-~v~--~~~~l~~a~~~a~~--~~~p~~i~v~~ 168 (168)
T cd00568 110 -----------QEAFYGGRVSGTDLSNPDFAALAEAYGAKGV-RVE--DPEDLEAALAEALA--AGGPALIEVKT 168 (168)
T ss_pred -----------HHHHcCCCcccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 0000000000011112344567999999987 554 59999999999986 58999999986
No 66
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.50 E-value=2.6e-14 Score=148.70 Aligned_cols=125 Identities=28% Similarity=0.369 Sum_probs=104.2
Q ss_pred CcccchhHHHHHHHHHHHHHhCCC-CeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCC-CCcCccCCCCCCCC
Q 003948 252 AGHSSTSISAGLGMAVARDILGKN-NNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~~-~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~-~s~~t~~~dg~~~~ 329 (784)
+..+.++||.|+|.|.|.|+..++ ..+||++|||+.+||.++-|+|+|+.+..|+||||-|||+ +|+||.++.+..
T Consensus 192 ssplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~D-- 269 (432)
T KOG1182|consen 192 SSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGD-- 269 (432)
T ss_pred cchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCC--
Confidence 456788999999999999988776 6789999999999999999999999999999999999996 777776653211
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
-++.| -.+||+..| .|||+|.-+++.|
T Consensus 270 ------------------------------------GIa~k----------------G~aYGi~sI-RVDGnD~lAvYnA 296 (432)
T KOG1182|consen 270 ------------------------------------GIAVK----------------GPAYGIRSI-RVDGNDALAVYNA 296 (432)
T ss_pred ------------------------------------ceEEe----------------ccccceEEE-EecCcchHHHHHH
Confidence 11222 458999988 7999999999999
Q ss_pred HHHhhcC--CCCCcEEEEEEecCC
Q 003948 410 FQRVKEM--PAPGPVLIHVVTEKG 431 (784)
Q Consensus 410 l~~ak~~--~~~~P~lI~v~T~kG 431 (784)
.+.|+++ ...+|++|++.|.+=
T Consensus 297 ~k~ARe~av~e~rPvliEamtYRv 320 (432)
T KOG1182|consen 297 VKEAREMAVTEQRPVLIEAMTYRV 320 (432)
T ss_pred HHHHHHHHHhccCchhhhhhhhhh
Confidence 9988864 357999999999763
No 67
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.46 E-value=2e-12 Score=131.95 Aligned_cols=132 Identities=20% Similarity=0.210 Sum_probs=93.5
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.+++.|+++||.||+...
T Consensus 51 ~~g~mG~~lpaaiGa~la~p----~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~yg------------- 111 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAAP----DRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQWG------------- 111 (196)
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECchhH-------------
Confidence 56889999999999998864 88999999999999 556779999999999999997776421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.++..-+... +. +....++-.+++..++++||++++ .| ++.++|.+++
T Consensus 112 -----------------~~~~~q~~~~---~~---------~~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~al 159 (196)
T cd02013 112 -----------------AEKKNQVDFY---NN---------RFVGTELESESFAKIAEACGAKGI-TV--DKPEDVGPAL 159 (196)
T ss_pred -----------------HHHHHHHHHc---CC---------CcccccCCCCCHHHHHHHCCCEEE-EE--CCHHHHHHHH
Confidence 1111000000 00 000001113566788999999887 44 5799999999
Q ss_pred HHhhcC-CCCCcEEEEEEecCCCC
Q 003948 411 QRVKEM-PAPGPVLIHVVTEKGKG 433 (784)
Q Consensus 411 ~~ak~~-~~~~P~lI~v~T~kG~G 433 (784)
+++.+. ..++|++|+|.+.+..+
T Consensus 160 ~~a~~~~~~~~p~liev~v~~~~~ 183 (196)
T cd02013 160 QKAIAMMAEGKTTVIEIVCDQELG 183 (196)
T ss_pred HHHHhcCCCCCeEEEEEEeCcccC
Confidence 988641 13789999999976654
No 68
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.45 E-value=7.7e-11 Score=138.86 Aligned_cols=424 Identities=18% Similarity=0.194 Sum_probs=254.7
Q ss_pred HHHHHHHHHHHH-HhCC-----CCeEEEEEcCCc-ccchhhHHHHHHHhhcCCC---EEEEEECCCCCCcCccCCCCCCC
Q 003948 259 ISAGLGMAVARD-ILGK-----NNNVISVIGDGA-MTAGQAYEAMNNAGFLDAN---LIVVLNDNKQVSLPTATLDGPAT 328 (784)
Q Consensus 259 ls~AvG~AlA~~-~~g~-----~~~Vv~viGDGa-l~eG~~~EAln~A~~~~~n---livIv~dN~~~s~~t~~~dg~~~ 328 (784)
=|..-|++-|.+ +++. ....+++-||.+ ..+|.++|.||+|..++.+ .|.||.||+. ...|...++.+.
T Consensus 625 dpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqi-GftT~p~~~Rss 703 (1228)
T PRK12270 625 DPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQV-GFTTAPESSRSS 703 (1228)
T ss_pred chHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCc-ccccCccccccc
Confidence 345668888764 2221 223467789999 4789999999999999877 9999999973 332221111110
Q ss_pred CcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 329 ~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
.|. . .+++.++...+ .|||.|++++..
T Consensus 704 ----------------~y~-----------------t-------------------d~ak~~~~Pif-hVNGdDpeAv~~ 730 (1228)
T PRK12270 704 ----------------EYA-----------------T-------------------DVAKMIQAPIF-HVNGDDPEAVVR 730 (1228)
T ss_pred ----------------hhh-----------------H-------------------HHHhhcCCCEE-eECCCCHHHHHH
Confidence 000 0 12556666665 689999999999
Q ss_pred HHHHhhcC--CCCCcEEEEEEecCCCCCChhh----hcccccCcc------cc---------------------------
Q 003948 409 IFQRVKEM--PAPGPVLIHVVTEKGKGYPPAE----AAADRMHGV------VK--------------------------- 449 (784)
Q Consensus 409 al~~ak~~--~~~~P~lI~v~T~kG~G~~~ae----~~~~~~Hg~------~~--------------------------- 449 (784)
+.+.|.+. .-++|++|++.|++-+|+-... ..+.-|.-+ .+
T Consensus 731 va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~ 810 (1228)
T PRK12270 731 VARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQ 810 (1228)
T ss_pred HHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 88877653 3579999999999999982111 111111100 00
Q ss_pred ----cccc--ccccc--C----------C-C---C---------------------------------------chhhHH
Q 003948 450 ----FDPK--TGKQF--K----------T-K---S---------------------------------------PTLTYT 468 (784)
Q Consensus 450 ----fd~~--~g~~~--~----------~-~---~---------------------------------------~~~s~~ 468 (784)
|... ..+.. . . . . ....|
T Consensus 811 Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g~iDW- 889 (1228)
T PRK12270 811 LERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREGGIDW- 889 (1228)
T ss_pred HHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcCCccH-
Confidence 0000 00000 0 0 0 0 00111
Q ss_pred HHHHHH--HHHHHhhCCCEEEEecCCCCCCC------------------hhhhHHhCCCC--eeeccccHHHHHHHHHHH
Q 003948 469 QYFAES--LIKEAETDDKIVAIHAAMGGGTG------------------LNYFQKRFPDR--CFDVGIAEQHAVTFAAGL 526 (784)
Q Consensus 469 ~af~~a--L~~l~~~d~~iv~i~aD~ggs~g------------------l~~f~~~~p~R--~~d~GIaE~~~vg~AaGl 526 (784)
+|++. +-.++.+...|..-+.|.-.+|= |..+.+. ..+ ++|..++|.+++|+=.|.
T Consensus 890 -a~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~-q~~f~vydS~LSEyAa~GFEYGY 967 (1228)
T PRK12270 890 -AFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDD-QGKFLVYDSLLSEYAAMGFEYGY 967 (1228)
T ss_pred -HHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCCC-cceEEEecchhhHHHhhccceee
Confidence 12222 22344444556666666544431 1122111 133 569999999999999999
Q ss_pred HhcCCeeE--EEe-cHhHH---HHHHHHHHHHhh---cCCCCEEEEeeCCCCCCCCCCCcCchh--hHhHhccCCCcEEE
Q 003948 527 ASEGVKPF--CAI-YSSFL---QRGYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCGAF--DVTFMSCLPNMVVM 595 (784)
Q Consensus 527 A~~G~~P~--~~t-ys~Fl---~ra~dQi~~~~a---~~~lpV~~v~~~~G~~G~dG~THq~~~--dla~lr~iPn~~V~ 595 (784)
+.+.--.. ++- |.+|. |-.+|+++...- -|+-.|++...|+ +-| .||-|+..- -.-.|.+=.||+|.
T Consensus 968 Sv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPHG-yEG-QGPdHSSaRiERfLqlcAe~nm~Va 1045 (1228)
T PRK12270 968 SVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPHG-YEG-QGPDHSSARIERFLQLCAEGNMTVA 1045 (1228)
T ss_pred ecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccCC-cCC-CCCCcchHHHHHHHHhhccCCeEEE
Confidence 99864444 443 88885 788998764432 3667788888774 334 488999743 33334456799999
Q ss_pred ecCCHHHHHHHHHH-HHHhCCCCeEEEcCCCCCccc-cCCCCCCCCCcccccee-Eeee-----CC--cEEEEEechhHH
Q 003948 596 APSDEAELMHMVAT-AAVIDDRPSCFRFPRGNGIGA-VLPPNNKGTPLEIGKGR-ILME-----GD--RVAILGYGSIVQ 665 (784)
Q Consensus 596 ~Psd~~E~~~~l~~-A~~~~~~Pv~irl~r~~~~~~-~~p~~~~~~~~~igk~~-vlre-----G~--dvtIva~Gs~v~ 665 (784)
.|++|....++++. |+....+|.+++.||..+..- ..-. -..|.-|+.+ ||.+ +. +=+|+|+|-..+
T Consensus 1046 ~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~---vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYY 1122 (1228)
T PRK12270 1046 QPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSD---VEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYY 1122 (1228)
T ss_pred ccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCC---HHHhccCCceecCCCCCCCCccceeEEEEEcchhHH
Confidence 99999999999985 444567799999998764311 1000 0122233332 3322 21 346889999998
Q ss_pred HHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccC----CeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEE
Q 003948 666 QCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH----EILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRS 740 (784)
Q Consensus 666 ~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~----~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~ 740 (784)
..++..+. ...-++.+|.+-.+.|||.+.+++.+..+ ..+.+-||-. .|-|. .++-.|.+. ++...++++
T Consensus 1123 dL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~-f~~~~l~~~--l~~~~~lr~ 1197 (1228)
T PRK12270 1123 DLAARREK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWP-FMALNLPEL--LPDGRRLRR 1197 (1228)
T ss_pred HHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCch-hhhhhhHhh--ccCCCCceE
Confidence 87766443 23456999999999999999998888654 3455556654 46664 333333332 222456777
Q ss_pred eecCccccc
Q 003948 741 MVLPDRYID 749 (784)
Q Consensus 741 lg~~d~f~~ 749 (784)
++-+..-.+
T Consensus 1198 VsRpasasP 1206 (1228)
T PRK12270 1198 VSRPASASP 1206 (1228)
T ss_pred ecCCcccCC
Confidence 776544333
No 69
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.42 E-value=6.9e-13 Score=132.31 Aligned_cols=126 Identities=21% Similarity=0.203 Sum_probs=89.1
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|.++|+|+|+++|.+ +++|||++|||+++ +..++|++|+++++|+++||.||+...+-...+.
T Consensus 46 ~~g~mG~~lp~AiGa~la~~----~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~------ 113 (172)
T cd02004 46 TFGTLGVGLGYAIAAALARP----DKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQ------ 113 (172)
T ss_pred CCCcccchHHHHHHHHHhCC----CCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECcccccchhhhh------
Confidence 46889999999999998865 88999999999999 5678899999999998888877653222110000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.. | + ........+-.++...++++||+.+. .|+ +.++|.+++
T Consensus 114 ---------~~----~--------------~--------~~~~~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~al 155 (172)
T cd02004 114 ---------LS----Y--------------G--------LGLPVTTLLPDTRYDLVAEAFGGKGE-LVT--TPEELKPAL 155 (172)
T ss_pred ---------hh----c--------------c--------CCCceeccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHH
Confidence 00 0 0 00000001112455677999999987 555 699999999
Q ss_pred HHhhcCCCCCcEEEEEEe
Q 003948 411 QRVKEMPAPGPVLIHVVT 428 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T 428 (784)
+++.+ .++|++|++++
T Consensus 156 ~~a~~--~~~p~liev~i 171 (172)
T cd02004 156 KRALA--SGKPALINVII 171 (172)
T ss_pred HHHHH--cCCCEEEEEEc
Confidence 99987 47999999986
No 70
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.42 E-value=1.6e-12 Score=139.83 Aligned_cols=210 Identities=23% Similarity=0.349 Sum_probs=122.2
Q ss_pred CCCCCCCCcHHHHHHHHhhccCC-C-CcEEEeCCCchH---HHHHHHhCc-----------hHHhHHH-Hhc---CCCCC
Q 003948 179 GGHLSANLGVVELTLALHRVFNT-P-DDKIIWDVGHQA---YVHKILTGR-----------RSRMNTM-RKT---SGLAG 238 (784)
Q Consensus 179 gGH~gsslg~~el~vaL~~~~~~-p-~D~~i~s~GH~~---y~~~~l~G~-----------~~~l~~~-r~~---ggl~g 238 (784)
-||+|++.|..-+++.|.++.+. - +-.+|...||.+ .+..+|.|- .+-|..| ||+ ||+++
T Consensus 47 lGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGipS 126 (379)
T PF09364_consen 47 LGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGIPS 126 (379)
T ss_dssp -S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB-S
T ss_pred ccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCCcc
Confidence 49999999999999998775432 2 344588899998 566788883 2334443 554 56777
Q ss_pred CCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHh-hcC----CCEEEEEECC
Q 003948 239 FPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAG-FLD----ANLIVVLNDN 313 (784)
Q Consensus 239 ~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~-~~~----~nlivIv~dN 313 (784)
|..+ ++|+.....|-+|.+++.|.|+++- ++|-.|+||+||||..+|-.-- -..+. .++ ..++-|+.-|
T Consensus 127 H~~p-~tPGsIhEGGELGYaLshA~GA~~D----nPdliv~~vvGDGEaETGplA~-sWh~~kflnP~~dGaVLPILhLN 200 (379)
T PF09364_consen 127 HVSP-ETPGSIHEGGELGYALSHAFGAVFD----NPDLIVACVVGDGEAETGPLAA-SWHSNKFLNPATDGAVLPILHLN 200 (379)
T ss_dssp SS-T-TSTT-S---SSTS-HHHHHHHHHTT-----TT-EEEEEEETTGGGSHHHHH-HGGGGGSS-TTTS-EEEEEEEE-
T ss_pred ccCc-CCCCccCcCcchhhHHHHHhhcccC----CCCeEEEEEecCCcccCCcccc-cccccceeCcccCceeeceEEec
Confidence 7765 5777777789999999999999864 4599999999999999995322 22232 222 5799999999
Q ss_pred CC-CCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCC
Q 003948 314 KQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGL 392 (784)
Q Consensus 314 ~~-~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~ 392 (784)
|+ ++.||- |+++ +-+++. .+|+.+||
T Consensus 201 G~KI~~pTi---------------l~r~----------------------~~~eL~----------------~lf~G~Gy 227 (379)
T PF09364_consen 201 GYKISNPTI---------------LARM----------------------SDEELE----------------ALFRGYGY 227 (379)
T ss_dssp SBSSSSB-H---------------HHHS-----------------------HHHHH----------------HHHHHTTE
T ss_pred CccccCCeE---------------eeec----------------------CHHHHH----------------HHHHhCCC
Confidence 96 554331 1111 012333 24999999
Q ss_pred eEEeecCCCCHHHHHHHH--------HHhhc-------C-CCCCc--EEEEEEecCCCCCChh------hhcccccCccc
Q 003948 393 YYIGPVDGHNVEDLVTIF--------QRVKE-------M-PAPGP--VLIHVVTEKGKGYPPA------EAAADRMHGVV 448 (784)
Q Consensus 393 ~~i~~vDGhd~~~l~~al--------~~ak~-------~-~~~~P--~lI~v~T~kG~G~~~a------e~~~~~~Hg~~ 448 (784)
..+ .|+|+|.+++.+.+ +++++ . ...+| -+|.++|.||++.|.. |+ ..+.|.++
T Consensus 228 ~p~-~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwPmivlRtPKGWtgP~~vdG~~iEG-t~raHQVP 305 (379)
T PF09364_consen 228 EPI-FVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPRWPMIVLRTPKGWTGPKEVDGKPIEG-TFRAHQVP 305 (379)
T ss_dssp EEE-EEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----EEEEEEE--TTTTS-SEETTEE-TT-SGGGSS-S
T ss_pred eEE-EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcEEEEECCcccCCccccCCccccC-cceeeecc
Confidence 876 78999987654332 22221 1 12244 4899999999987742 33 24567776
Q ss_pred c
Q 003948 449 K 449 (784)
Q Consensus 449 ~ 449 (784)
.
T Consensus 306 l 306 (379)
T PF09364_consen 306 L 306 (379)
T ss_dssp S
T ss_pred c
Confidence 4
No 71
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.40 E-value=1.9e-12 Score=130.03 Aligned_cols=127 Identities=21% Similarity=0.308 Sum_probs=93.1
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhh-HHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCC
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQA-YEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~-~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~ 329 (784)
+.|.+|.++|+|+|+++|.+ +++||+++|||+++ +. +++|.+|.+++.|+++||.||+...+- +....
T Consensus 49 ~~g~mG~gl~~AiGa~la~p----~~~Vv~i~GDG~f~--~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~-----~~~~~ 117 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE----DKKVVAVIGDSTFF--HSGILGLINAVYNKANITVVILDNRTTAMT-----GGQPH 117 (178)
T ss_pred ccccCccHHHHHhhHHhhCC----CCCEEEEecChHHh--hccHHHHHHHHHcCCCEEEEEECCcceecc-----CCCCC
Confidence 47899999999999999976 78999999999997 43 789999999999998888888742211 00000
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
.... . ......-..+...++++|||.++...++++++++.++
T Consensus 118 ~~~~-------------------------------~-------~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~a 159 (178)
T cd02008 118 PGTG-------------------------------K-------TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREE 159 (178)
T ss_pred CCCc-------------------------------c-------cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHH
Confidence 0000 0 0000001134456799999999877799999999999
Q ss_pred HHHhhcCCCCCcEEEEEEe
Q 003948 410 FQRVKEMPAPGPVLIHVVT 428 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T 428 (784)
++++.+ .++|++|+++.
T Consensus 160 l~~a~~--~~gp~lI~v~~ 176 (178)
T cd02008 160 LKEALA--VPGVSVIIAKR 176 (178)
T ss_pred HHHHHh--CCCCEEEEEeC
Confidence 999886 57999999975
No 72
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.40 E-value=1.8e-12 Score=131.45 Aligned_cols=121 Identities=26% Similarity=0.353 Sum_probs=92.2
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCC
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATP 329 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~ 329 (784)
..|++|+++|+|+|+++|.+ +++|+|++|||+++ +..++|.+|+++++ |+++||.||+...+. +....
T Consensus 46 ~~g~mG~~lpaAiGaala~p----~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~-----~~~~~ 114 (188)
T cd03371 46 TVGSMGHASQIALGIALARP----DRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSV-----GGQPT 114 (188)
T ss_pred ecCccccHHHHHHHHHHhCC----CCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhcc-----CCcCC
Confidence 45999999999999999875 78999999999998 56788999999884 788888888743210 00000
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
. ....+...++++||+.+...+ ++.++|.++
T Consensus 115 ~-----------------------------------------------~~~~d~~~~A~a~G~~~~~~v--~~~~el~~a 145 (188)
T cd03371 115 V-----------------------------------------------SFDVSLPAIAKACGYRAVYEV--PSLEELVAA 145 (188)
T ss_pred C-----------------------------------------------CCCCCHHHHHHHcCCceEEec--CCHHHHHHH
Confidence 0 001234456999999864345 489999999
Q ss_pred HHHhhcCCCCCcEEEEEEecCCCC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEKGKG 433 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~kG~G 433 (784)
++++.+ .++|++|++.|.++++
T Consensus 146 l~~a~~--~~~p~lIev~~~~~~~ 167 (188)
T cd03371 146 LAKALA--ADGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHh--CCCCEEEEEEecCCCC
Confidence 999986 5799999999988876
No 73
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.39 E-value=2.1e-12 Score=130.52 Aligned_cols=128 Identities=22% Similarity=0.362 Sum_probs=93.1
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+...
T Consensus 48 ~~g~mG~~lp~aiGa~la~~----~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~------------- 108 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVARP----DKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLG------------- 108 (186)
T ss_pred CccchhchHHHHHHHHHhCC----CCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccH-------------
Confidence 56889999999999998864 78999999999998 667789999999999999998887421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh-hhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
.++..-+. .. .+.+. ..+ -.++...++++||+++. .|+ +.++|.+
T Consensus 109 -----------------~~~~~~~~------------~~-~~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~ 155 (186)
T cd02015 109 -----------------MVRQWQEL------------FY-EGRYSHTTLDSNPDFVKLAEAYGIKGL-RVE--KPEELEA 155 (186)
T ss_pred -----------------HHHHHHHH------------Hc-CCceeeccCCCCCCHHHHHHHCCCceE-EeC--CHHHHHH
Confidence 11110000 00 00000 011 12456678999999987 454 5899999
Q ss_pred HHHHhhcCCCCCcEEEEEEecCCC
Q 003948 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+++++.+ .++|++|+|.|.+..
T Consensus 156 al~~a~~--~~~p~liev~~~~~~ 177 (186)
T cd02015 156 ALKEALA--SDGPVLLDVLVDPEE 177 (186)
T ss_pred HHHHHHh--CCCCEEEEEEeCCCc
Confidence 9999986 589999999997543
No 74
>PRK06163 hypothetical protein; Provisional
Probab=99.39 E-value=9.6e-12 Score=127.35 Aligned_cols=164 Identities=19% Similarity=0.292 Sum_probs=110.7
Q ss_pred CCCcHHHHHHHHhhccCCCCcEEEeCCCc---hHHHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHH
Q 003948 184 ANLGVVELTLALHRVFNTPDDKIIWDVGH---QAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSIS 260 (784)
Q Consensus 184 sslg~~el~vaL~~~~~~p~D~~i~s~GH---~~y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls 260 (784)
..+.-.+++-.|...+ .+.|.++.|.|. +.+.. +. .| ...++.|.+|+++|
T Consensus 11 ~~~~~~~~i~~l~~~l-~~~~~iv~D~G~~~~~~~~~-------------~~------~~------~~~~~~GsMG~glp 64 (202)
T PRK06163 11 KVMNRFDLTCRLVAKL-KDEEAVIGGIGNTNFDLWAA-------------GQ------RP------QNFYMLGSMGLAFP 64 (202)
T ss_pred CCcCHHHHHHHHHHhc-CCCCEEEECCCccHHHHHHh-------------hc------CC------CCeEeecccccHHH
Confidence 3455555555555444 346888999994 22322 10 01 11124688999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhc-CCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHH
Q 003948 261 AGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL-DANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSK 339 (784)
Q Consensus 261 ~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~-~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~ 339 (784)
+|+|+++|.+ +++|||++|||+++ |...+|.+|.++ +.|+++||.||+...+. +... ..
T Consensus 65 aAiGaalA~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~-----~~~~-~~-------- 124 (202)
T PRK06163 65 IALGVALAQP----KRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQIT-----GGQP-TL-------- 124 (202)
T ss_pred HHHHHHHhCC----CCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhhc-----CCcc-CC--------
Confidence 9999999864 78999999999998 666789999876 58999999999742210 0000 00
Q ss_pred hhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCe-EEeecCCCCHHHHHHHHHHhhcCCC
Q 003948 340 LQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY-YIGPVDGHNVEDLVTIFQRVKEMPA 418 (784)
Q Consensus 340 ~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~-~i~~vDGhd~~~l~~al~~ak~~~~ 418 (784)
..-.++...++++||++ .. .+ .+.++|..+++++.+ .
T Consensus 125 -------------------------------------~~~~~Df~~lA~a~G~~~~~-~v--~~~~el~~al~~a~~--~ 162 (202)
T PRK06163 125 -------------------------------------TSQTVDVVAIARGAGLENSH-WA--ADEAHFEALVDQALS--G 162 (202)
T ss_pred -------------------------------------CCCCCCHHHHHHHCCCceEE-Ee--CCHHHHHHHHHHHHh--C
Confidence 00113445679999996 33 23 589999999999986 5
Q ss_pred CCcEEEEEEecCCCCCC
Q 003948 419 PGPVLIHVVTEKGKGYP 435 (784)
Q Consensus 419 ~~P~lI~v~T~kG~G~~ 435 (784)
++|++|+|.+......+
T Consensus 163 ~~p~lIeV~i~~~~~~~ 179 (202)
T PRK06163 163 PGPSFIAVRIDDKPGVG 179 (202)
T ss_pred CCCEEEEEEecCCCCCC
Confidence 89999999998665433
No 75
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.36 E-value=4.9e-12 Score=130.00 Aligned_cols=139 Identities=21% Similarity=0.263 Sum_probs=93.5
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++|+|+|+++|.+ +++|||++|||+++.+ ..+|.+|.++++|+++||-||+.+.+
T Consensus 46 ~~gsmG~~lpaAiGa~la~p----~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~------------ 107 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAKP----DREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGFGC------------ 107 (205)
T ss_pred CcchhhhHHHHHHHHHHhCC----CCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCccHH------------
Confidence 66899999999999998864 8899999999999954 46799999999998888877764211
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhh-hhcCCchHHHHHHH-H-HHhh-hccCCCchhhhhhcCCeEEeecCCCCHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSIT-KQIGGQTHEVAAKV-D-EYAR-GLISASGSTFFEELGLYYIGPVDGHNVEDL 406 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~-~~~g~~~~~~~~k~-~-~~~r-~~~~~~~~~lfea~G~~~i~~vDGhd~~~l 406 (784)
++..-+... +..+. ....+. + .... ..-.++...++++||+.+.. | ++.++|
T Consensus 108 ------------------~~~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~-v--~~~~el 163 (205)
T cd02003 108 ------------------INNLQESTGSGSFGT---EFRDRDQESGQLDGALLPVDFAANARSLGARVEK-V--KTIEEL 163 (205)
T ss_pred ------------------HHHHHHHhcCccccc---hhcccccccccccCCCCCCCHHHHHHhCCCEEEE-E--CCHHHH
Confidence 110000000 00000 000000 0 0000 01135667889999999864 4 689999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEecCCCC
Q 003948 407 VTIFQRVKEMPAPGPVLIHVVTEKGKG 433 (784)
Q Consensus 407 ~~al~~ak~~~~~~P~lI~v~T~kG~G 433 (784)
.++++++.+ .++|++|+|.+.+...
T Consensus 164 ~~al~~a~~--~~gp~lIeV~v~~~~~ 188 (205)
T cd02003 164 KAALAKAKA--SDRTTVIVIKTDPKSM 188 (205)
T ss_pred HHHHHHHHh--CCCCEEEEEEeecccc
Confidence 999999986 5899999999976553
No 76
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.34 E-value=7e-12 Score=125.58 Aligned_cols=130 Identities=23% Similarity=0.285 Sum_probs=89.6
Q ss_pred cCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCC
Q 003948 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (784)
Q Consensus 250 ~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~ 329 (784)
.+ |.+|.++|+|+|+++|.+ +++|+|++|||+++.+. +++++|.+++.|+++||.||+...+
T Consensus 47 ~~-g~mG~~lp~aiGaala~~----~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~----------- 108 (178)
T cd02002 47 RG-GGLGWGLPAAVGAALANP----DRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGA----------- 108 (178)
T ss_pred CC-ccccchHHHHHHHHhcCC----CCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHH-----------
Confidence 36 999999999999999874 78999999999999664 7899999999999999999974221
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhc--cCCCchhhhhhcCCeEEeecCCCCHHHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL--ISASGSTFFEELGLYYIGPVDGHNVEDLV 407 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~--~~~~~~~lfea~G~~~i~~vDGhd~~~l~ 407 (784)
++..-.... +.... ..+....+. -..+...++++||+++. .+++ .+++.
T Consensus 109 -------------------~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~~--~~el~ 159 (178)
T cd02002 109 -------------------LRSFLKRVG---PEGPG----ENAPDGLDLLDPGIDFAAIAKAFGVEAE-RVET--PEELD 159 (178)
T ss_pred -------------------HHHHHHHHc---CCCcc----cccccccccCCCCCCHHHHHHHcCCceE-EeCC--HHHHH
Confidence 000000000 00000 000000000 12345677999999986 5554 99999
Q ss_pred HHHHHhhcCCCCCcEEEEEEe
Q 003948 408 TIFQRVKEMPAPGPVLIHVVT 428 (784)
Q Consensus 408 ~al~~ak~~~~~~P~lI~v~T 428 (784)
++++++.+ .++|++|++++
T Consensus 160 ~al~~a~~--~~~p~vi~v~v 178 (178)
T cd02002 160 EALREALA--EGGPALIEVVV 178 (178)
T ss_pred HHHHHHHh--CCCCEEEEEEC
Confidence 99999986 57999999864
No 77
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.34 E-value=8.7e-12 Score=127.79 Aligned_cols=140 Identities=22% Similarity=0.267 Sum_probs=94.5
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||-||+.+
T Consensus 55 ~~GsmG~~lpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~y-------------- 114 (202)
T cd02006 55 QAGPLGWTVPAALGVAAADP----DRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYL-------------- 114 (202)
T ss_pred CccchhhhhHHHHhHHhhCC----CCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCchH--------------
Confidence 56999999999999999864 88999999999998 66688999999999999999999842
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh-hhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
+.++..-+....... ........... ...-.+++..++++||+.+.. | .+.++|.++
T Consensus 115 ----------------g~~~~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~el~~a 172 (202)
T cd02006 115 ----------------GLIRQAQRAFDMDYQ---VNLAFENINSSELGGYGVDHVKVAEGLGCKAIR-V--TKPEELAAA 172 (202)
T ss_pred ----------------HHHHHHHHHhcCccc---cccccccccccccCCCCCCHHHHHHHCCCEEEE-E--CCHHHHHHH
Confidence 111111000000000 00000000000 000125677899999998764 4 679999999
Q ss_pred HHHhhcC--CCCCcEEEEEEecCCC
Q 003948 410 FQRVKEM--PAPGPVLIHVVTEKGK 432 (784)
Q Consensus 410 l~~ak~~--~~~~P~lI~v~T~kG~ 432 (784)
++++.+. ..++|++|+|.+....
T Consensus 173 l~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 173 FEQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred HHHHHHhcccCCCcEEEEEEecccc
Confidence 9998741 1478999999986544
No 78
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.34 E-value=9.4e-12 Score=125.23 Aligned_cols=119 Identities=24% Similarity=0.309 Sum_probs=88.6
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCC
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATP 329 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~ 329 (784)
+.|++|+++|+|+|+|+|.+ ++|+|++|||+++ +...++.+|.+++ .|+++||.||+...+- +....
T Consensus 40 ~~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~-----~~~~~ 107 (179)
T cd03372 40 MLGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGST-----GNQPT 107 (179)
T ss_pred cccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCcccccc-----CCCCC
Confidence 36899999999999999864 7899999999997 4456899999888 5788887666632221 00000
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
.. ...++...++++||+.+. .++| +.+++.++
T Consensus 108 --~~--------------------------------------------~~~~d~~~lA~a~G~~~~-~v~~-~~~el~~a 139 (179)
T cd03372 108 --HA--------------------------------------------GKKTDLEAVAKACGLDNV-ATVA-SEEAFEKA 139 (179)
T ss_pred --CC--------------------------------------------CCCCCHHHHHHHcCCCeE-EecC-CHHHHHHH
Confidence 00 001334456899999987 5666 89999999
Q ss_pred HHHhhcCCCCCcEEEEEEecCCCC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEKGKG 433 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~kG~G 433 (784)
+++++ ++|++|++.|.++.+
T Consensus 140 l~~a~----~gp~lIev~~~~~~~ 159 (179)
T cd03372 140 VEQAL----DGPSFIHVKIKPGNT 159 (179)
T ss_pred HHHhc----CCCEEEEEEEcCCCC
Confidence 99886 589999999988775
No 79
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.31 E-value=2.1e-10 Score=130.94 Aligned_cols=249 Identities=18% Similarity=0.207 Sum_probs=174.3
Q ss_pred CCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCC---EEEEeeCCCCCCCCCCCcCchhhH
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLP---VRFAMDRAGLVGADGPTHCGAFDV 583 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lp---V~~v~~~~G~~G~dG~THq~~~dl 583 (784)
+-||+.+.+|.-+..+|+|.++.|.+.++..-...+.+|.|.+++ +++.... |++++|..|..+ -...|+.
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~s-~ay~Gv~GGlviv~aDDpg~~S--Sqneqds--- 131 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLMS-LAYAGVTGGLVIVVADDPGMHS--SQNEQDS--- 131 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhhh-hhhcCccccEEEEEccCCCccc--ccchhHh---
Confidence 789999999999999999999999999999998899999999854 5665543 455555555311 1223333
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh---CCCCeEEEcCCCCCc---ccc-----CCC-CCC--CCCccccce---
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGNGI---GAV-----LPP-NNK--GTPLEIGKG--- 646 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl~r~~~~---~~~-----~p~-~~~--~~~~~igk~--- 646 (784)
.++...-.+-|+.|+|++|+.++++.+++. ...|+++|.+..... .++ .+. ..+ ...-+.++.
T Consensus 132 r~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~ 211 (640)
T COG4231 132 RAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRV 211 (640)
T ss_pred HHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeec
Confidence 344444566699999999999999999983 445999987532100 000 000 000 000011111
Q ss_pred ----------------------------eEeeeC--CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHH
Q 003948 647 ----------------------------RILMEG--DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL 696 (784)
Q Consensus 647 ----------------------------~vlreG--~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~ 696 (784)
..+.-+ .++-||+.|-....+.+|.+.| |++..++-+-+.+||+.+.
T Consensus 212 p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~~~Plp~~~ 288 (640)
T COG4231 212 PANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGTPYPLPEQL 288 (640)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecCCcCCCHHH
Confidence 000013 6899999999999999886654 8999999999999999999
Q ss_pred HHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 003948 697 IRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 697 i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll~ 776 (784)
+++.++..+.|+||||... =+..+|.+.+.+.+. ++...|-.+++.+ .+.-+|++.|..+|.++++
T Consensus 289 i~~F~~g~~~vlVVEE~~P-~iE~qv~~~l~~~g~-----~v~v~GKd~gllP--------~~GElt~~~i~~ai~~~l~ 354 (640)
T COG4231 289 IENFLKGLERVLVVEEGEP-FIEEQVKALLYDAGL-----PVEVHGKDEGLLP--------MEGELTPEKIANAIAKFLG 354 (640)
T ss_pred HHHHHhcCcEEEEEecCCc-hHHHHHHHHHHhcCC-----ceEeecccccccC--------cccccCHHHHHHHHHHHhC
Confidence 9999999999999999864 456777777766543 3444444444443 1234799999999999887
Q ss_pred CC
Q 003948 777 RP 778 (784)
Q Consensus 777 ~~ 778 (784)
+.
T Consensus 355 ~~ 356 (640)
T COG4231 355 KE 356 (640)
T ss_pred cc
Confidence 54
No 80
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.31 E-value=1.3e-11 Score=124.08 Aligned_cols=127 Identities=16% Similarity=0.255 Sum_probs=92.4
Q ss_pred cCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCC
Q 003948 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (784)
Q Consensus 250 ~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~ 329 (784)
.+.|.+|.++|+|+|+++|.+ +++|||++|||+++ +....|.+|.++++|+++||.||+...
T Consensus 45 ~~~g~mG~~lp~aiGa~la~~----~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~g------------ 106 (177)
T cd02010 45 NGLATMGVALPGAIGAKLVYP----DRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYG------------ 106 (177)
T ss_pred CCChhhhhHHHHHHHHHHhCC----CCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcch------------
Confidence 367899999999999999864 88999999999998 666789999999999999988887321
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
.++.. +..... +....++-.++...++++||.++.. + .+.+++.++
T Consensus 107 ------------------~~~~~------------~~~~~~-~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~a 152 (177)
T cd02010 107 ------------------LIKWK------------QEKEYG-RDSGVDFGNPDFVKYAESFGAKGYR-I--ESADDLLPV 152 (177)
T ss_pred ------------------HHHHH------------HHHhcC-CcccCcCCCCCHHHHHHHCCCEEEE-E--CCHHHHHHH
Confidence 11000 000000 0000011124667789999998763 4 589999999
Q ss_pred HHHhhcCCCCCcEEEEEEecC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~k 430 (784)
++++.+ .++|++|+|.+..
T Consensus 153 l~~a~~--~~~p~liev~~~~ 171 (177)
T cd02010 153 LERALA--ADGVHVIDCPVDY 171 (177)
T ss_pred HHHHHh--CCCCEEEEEEecc
Confidence 999987 5899999999853
No 81
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.31 E-value=4.5e-12 Score=123.99 Aligned_cols=130 Identities=20% Similarity=0.327 Sum_probs=92.1
Q ss_pred ccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCC
Q 003948 249 AFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPAT 328 (784)
Q Consensus 249 ~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~ 328 (784)
..+.|.+|.++|+|+|+++|.+ +++|||++|||++... ..+|.+|.+++.|+++||.||+.+.+
T Consensus 24 ~~~~g~mG~~~~~aiGa~~a~p----~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~---------- 87 (153)
T PF02775_consen 24 SGGFGSMGYALPAAIGAALARP----DRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGM---------- 87 (153)
T ss_dssp STTTT-TTTHHHHHHHHHHHST----TSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHH----------
T ss_pred CCCccccCCHHHhhhHHHhhcC----cceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceE----------
Confidence 3478999999999999999854 8999999999999844 66799999999999999999974211
Q ss_pred CcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 329 ~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
++... ...+.. ... ....+.+-..+...+++++|+++. .|+-.|.+++.+
T Consensus 88 --------------------~~~~~----~~~~~~--~~~---~~~~~~~~~~d~~~~a~a~G~~~~-~v~~~~~~el~~ 137 (153)
T PF02775_consen 88 --------------------TGGQQ----TPFGGG--RFS---GVDGKTFPNPDFAALAEAFGIKGA-RVTTPDPEELEE 137 (153)
T ss_dssp --------------------HHHHH----HHTTST--CHH---STBTTTSTTCGHHHHHHHTTSEEE-EESCHSHHHHHH
T ss_pred --------------------ecccc----ccCcCc--ccc---cccccccccCCHHHHHHHcCCcEE-EEccCCHHHHHH
Confidence 00000 000000 000 000001233566778999999976 677677799999
Q ss_pred HHHHhhcCCCCCcEEEEE
Q 003948 409 IFQRVKEMPAPGPVLIHV 426 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v 426 (784)
+++++.+ .++|++|+|
T Consensus 138 al~~a~~--~~gp~vIeV 153 (153)
T PF02775_consen 138 ALREALE--SGGPAVIEV 153 (153)
T ss_dssp HHHHHHH--SSSEEEEEE
T ss_pred HHHHHHh--CCCcEEEEc
Confidence 9999996 689999997
No 82
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.30 E-value=1.5e-11 Score=123.62 Aligned_cols=126 Identities=21% Similarity=0.327 Sum_probs=89.8
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|+++|+|+|+++|.+ +++|+|++|||+++.+ . .+|.+|.+++.|+++||.||+...+
T Consensus 49 ~~g~mG~~~~~aiGa~~a~~----~~~vv~i~GDG~f~~~-~-~el~t~~~~~lp~~~iv~NN~~~~~------------ 110 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAYP----DRQVIALSGDGGFAML-M-GDLITAVKYNLPVIVVVFNNSDLGF------------ 110 (178)
T ss_pred CCchhhhHHHHHHHHHHhCC----CCcEEEEEcchHHHhh-H-HHHHHHHHhCCCcEEEEEECCchhH------------
Confidence 56899999999999998864 7899999999999976 4 4488899999999999988874211
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
++..-+. .+. ..+..++-..+..+++++||+++. .+ .+.+++.+++
T Consensus 111 ------------------~~~~~~~----~~~---------~~~~~~~~~~d~~~la~a~G~~~~-~v--~~~~el~~~l 156 (178)
T cd02014 111 ------------------IKWEQEV----MGQ---------PEFGVDLPNPDFAKIAEAMGIKGI-RV--EDPDELEAAL 156 (178)
T ss_pred ------------------HHHHHHH----hcC---------CceeccCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 1000000 000 000011112345677999999876 44 4789999999
Q ss_pred HHhhcCCCCCcEEEEEEecC
Q 003948 411 QRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~k 430 (784)
+++.+ .++|++|++.|.+
T Consensus 157 ~~a~~--~~~p~liev~~~~ 174 (178)
T cd02014 157 DEALA--ADGPVVIDVVTDP 174 (178)
T ss_pred HHHHh--CCCCEEEEEEeCC
Confidence 99887 5799999999864
No 83
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.30 E-value=1.4e-11 Score=121.36 Aligned_cols=116 Identities=25% Similarity=0.334 Sum_probs=87.9
Q ss_pred CcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhc-CCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL-DANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~-~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
.|++|.++|+|+|+++|.+ ++|||++|||+++ |...++.+++++ +.|+++||.||+....- +.....
T Consensus 41 ~gsmG~~lp~AiGa~~a~~-----~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g~~-----~~~~~~ 108 (157)
T cd02001 41 LGSMGLAGSIGLGLALGLS-----RKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGST-----GGQPTP 108 (157)
T ss_pred ecchhhHHHHHHHHHhcCC-----CcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCcccccc-----CCcCCC
Confidence 6889999999999999862 7899999999997 455679999888 49999999777642210 000000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
...++...++++||+.++. + ++.++|.+++
T Consensus 109 -----------------------------------------------~~~~d~~~lA~a~G~~~~~-v--~~~~el~~al 138 (157)
T cd02001 109 -----------------------------------------------SSNVNLEAWAAACGYLVLS-A--PLLGGLGSEF 138 (157)
T ss_pred -----------------------------------------------CCCCCHHHHHHHCCCceEE-c--CCHHHHHHHH
Confidence 0023445679999999863 3 6899999999
Q ss_pred HHhhcCCCCCcEEEEEEecCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG 431 (784)
+++.+ .++|++|++++.++
T Consensus 139 ~~a~~--~~gp~vi~v~i~~~ 157 (157)
T cd02001 139 AGLLA--TTGPTLLHAPIAPG 157 (157)
T ss_pred HHHHh--CCCCEEEEEEecCC
Confidence 99987 57999999999764
No 84
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.30 E-value=1.3e-10 Score=128.95 Aligned_cols=168 Identities=23% Similarity=0.277 Sum_probs=114.7
Q ss_pred CcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHH
Q 003948 186 LGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGM 265 (784)
Q Consensus 186 lg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~ 265 (784)
++-.+.+-.+...+ .++|.+|.+.|-.+. ++..+| ...+++||.. .+..|++|+++|+|+|+
T Consensus 172 ~~r~~ai~~i~~~l-~~~~iVV~~~G~~s~----------el~~~~-~~~~~~~~~~------f~~~GsMG~a~p~AlG~ 233 (361)
T TIGR03297 172 MTREEAIAAILDHL-PDNTVIVSTTGKTSR----------ELYELR-DRIGQGHARD------FLTVGSMGHASQIALGL 233 (361)
T ss_pred CCHHHHHHHHHHhC-CCCCEEEECCCCCcH----------HHHHhh-cccccCCCCc------eEeechhhhHHHHHHHH
Confidence 56666554444334 356888888884332 122333 1223556532 23459999999999999
Q ss_pred HHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhh
Q 003948 266 AVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQAST 344 (784)
Q Consensus 266 AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~ 344 (784)
|+|.+ +++|||+.|||++. |...+|.++++++ .|+++||.||+.... .|......
T Consensus 234 ala~p----~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~-----~g~q~~~~------------- 289 (361)
T TIGR03297 234 ALARP----DQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDS-----VGGQPTVS------------- 289 (361)
T ss_pred HHHCC----CCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCccccc-----cCCcCCCC-------------
Confidence 99865 78999999999997 5667899999888 599999999984221 11111000
Q ss_pred hHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEE
Q 003948 345 NFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLI 424 (784)
Q Consensus 345 ~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI 424 (784)
...+...++++|||... +..++.++|.++++++++ .++|++|
T Consensus 290 ----------------------------------~~~d~~~iA~a~G~~~~--~~v~~~~eL~~al~~a~~--~~gp~lI 331 (361)
T TIGR03297 290 ----------------------------------QHLDFAQIAKACGYAKV--YEVSTLEELETALTAASS--ANGPRLI 331 (361)
T ss_pred ----------------------------------CCCCHHHHHHHCCCceE--EEeCCHHHHHHHHHHHHh--CCCcEEE
Confidence 01233456899998432 244899999999999986 5789999
Q ss_pred EEEecCCCC
Q 003948 425 HVVTEKGKG 433 (784)
Q Consensus 425 ~v~T~kG~G 433 (784)
++++.+|.+
T Consensus 332 eV~v~~g~~ 340 (361)
T TIGR03297 332 EVKVRPGSR 340 (361)
T ss_pred EEEecCCCc
Confidence 999988764
No 85
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.29 E-value=5.3e-10 Score=140.09 Aligned_cols=250 Identities=15% Similarity=0.102 Sum_probs=170.6
Q ss_pred eeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCcCchhhHhHhc
Q 003948 509 CFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFDVTFMS 587 (784)
Q Consensus 509 ~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~G~dG~THq~~~dla~lr 587 (784)
|+. .=+|.++++++.|.+..|.+.++.|.+..+..+.+.+ ..++..++|++++. .|+|. +.....+.+..|+..+|
T Consensus 54 ~vq-~EsE~~A~~av~GA~~aGara~T~TSs~GL~LM~e~l-~~~ag~~~P~Vi~va~R~~~-~~~~~i~~dh~Dv~~~R 130 (1165)
T TIGR02176 54 VVE-MQSEAGAAGAVHGALQTGALTTTFTASQGLLLMIPNM-YKIAGELLPCVFHVSARAIA-AHALSIFGDHQDVMAAR 130 (1165)
T ss_pred EEE-ccchHHHHHHHHhHhhcCCCEEEecChhHHHHHHHHH-HHHHhccCCEEEEEecCCCC-CCCCccCCCchHHHHhh
Confidence 444 4699999999999999999999999888777777876 34566699988877 45543 22234565666666667
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCCC----CccccCCCC-----------CCCC---------C
Q 003948 588 CLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN----GIGAVLPPN-----------NKGT---------P 640 (784)
Q Consensus 588 ~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~~----~~~~~~p~~-----------~~~~---------~ 640 (784)
. -|+.+++|++.+|+.++...|++ +...|+++.++--. ..++.+++. ...+ +
T Consensus 131 ~-~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p 209 (1165)
T TIGR02176 131 Q-TGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHP 209 (1165)
T ss_pred c-CCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCC
Confidence 6 57899999999999999998876 35669988765311 001111000 0000 0
Q ss_pred cc--------------------------------------ccce----e-EeeeCCcEEEEEechhHHHHHHHHHHHhcC
Q 003948 641 LE--------------------------------------IGKG----R-ILMEGDRVAILGYGSIVQQCVLAANMLKSQ 677 (784)
Q Consensus 641 ~~--------------------------------------igk~----~-vlreG~dvtIva~Gs~v~~aleAae~L~~~ 677 (784)
.. .|+. . .-.++.+++||++|+....+.+|++.|+++
T Consensus 210 ~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~ 289 (1165)
T TIGR02176 210 HVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAK 289 (1165)
T ss_pred ceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhc
Confidence 00 0110 0 011357899999999999999999999999
Q ss_pred CCcEEEeeccccCCCcHHHHHHHh-ccCCeEEEEcCCCc-C----CcHHHHHHHHHhcCCCCCCcceEEeecCcccccCC
Q 003948 678 DISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSV-G----GFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHG 751 (784)
Q Consensus 678 GI~v~VId~~slkPlD~e~i~~~~-~~~~~vVvvEe~~~-g----G~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g 751 (784)
|++|++|.++.++||+.+.+++.+ ++.+.|+|+|.+.. | .+...|...+...+ . ..+ ..++ -.|+..|
T Consensus 290 G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~~~--~-~~~-~v~~--~~~Glgg 363 (1165)
T TIGR02176 290 GEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYEMG--E-AMP-VILG--GRYGLGS 363 (1165)
T ss_pred CCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhhcc--C-CCC-EEEE--EEECCCC
Confidence 999999999999999999998877 57899999998852 3 36666766665321 0 111 1121 2233222
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHhc
Q 003948 752 SPADQLEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 752 ~~~elle~~gl~~~~I~~~i~~ll~ 776 (784)
..+++++|.+.+.++..
T Consensus 364 --------~~~tp~~i~~i~~~l~~ 380 (1165)
T TIGR02176 364 --------KEFTPAMVKAVFDNLSG 380 (1165)
T ss_pred --------CCCCHHHHHHHHHHHhc
Confidence 12688888888887754
No 86
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.26 E-value=3.8e-11 Score=121.07 Aligned_cols=118 Identities=24% Similarity=0.330 Sum_probs=87.8
Q ss_pred CcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
.|++|.++|+|+|+++|. +++|||++|||+++.+ .+++.+|++++ .|+++||.||+.+..- +...
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~~yg~~-----~~q~-- 106 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNGAYGST-----GNQP-- 106 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCCccccc-----cCcC--
Confidence 688999999999999985 6789999999999854 47899999888 5999999888742210 0000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
. + ..-.+++..++++||+.+... .++.++|.++|
T Consensus 107 --~---------------------------~---------------~~~~~d~~~lA~a~G~~~~~~--v~~~~~l~~al 140 (181)
T TIGR03846 107 --T---------------------------P---------------ASRRTDLELVAKAAGIRNVEK--VADEEELRDAL 140 (181)
T ss_pred --C---------------------------C---------------CCCCCCHHHHHHHCCCCeEEE--eCCHHHHHHHH
Confidence 0 0 000234456799999987642 37899999999
Q ss_pred HHhhcCCCCCcEEEEEEecCCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+ +.+ .++|++|+|.+.++.
T Consensus 141 ~-a~~--~~~p~li~v~~~~~~ 159 (181)
T TIGR03846 141 K-ALA--MKGPTFIHVKVKPGN 159 (181)
T ss_pred H-HHc--CCCCEEEEEEeCCCC
Confidence 7 665 579999999997554
No 87
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.26 E-value=9.5e-11 Score=118.37 Aligned_cols=124 Identities=22% Similarity=0.236 Sum_probs=86.5
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|.++|+|+|+++|.+ +++|+|++|||+++.. .+| +.+|.+++.|+++||-||+...+-...+. ...
T Consensus 48 ~~g~mG~~l~~aiGaala~~----~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~-~~~-- 118 (183)
T cd02005 48 LWGSIGYSVPAALGAALAAP----DRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIHG-PEA-- 118 (183)
T ss_pred chhhHhhhHHHHHHHHHhCC----CCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEEEEEecc-CCc--
Confidence 56899999999999999865 7899999999999753 445 77899888777777766663222110000 000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcC----CeEEeecCCCCHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELG----LYYIGPVDGHNVEDL 406 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G----~~~i~~vDGhd~~~l 406 (784)
.+ .++..++...++++|| +.+... ++.+++
T Consensus 119 ------------------------------------------~~-~~~~~~d~~~ia~a~G~~~~~~~~~v---~~~~el 152 (183)
T cd02005 119 ------------------------------------------SY-NDIANWNYTKLPEVFGGGGGGLSFRV---KTEGEL 152 (183)
T ss_pred ------------------------------------------Cc-ccCCCCCHHHHHHHhCCCccccEEEe---cCHHHH
Confidence 00 0111244566799999 566533 789999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEecC
Q 003948 407 VTIFQRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 407 ~~al~~ak~~~~~~P~lI~v~T~k 430 (784)
.++++++.+. .++|++||+.|.+
T Consensus 153 ~~al~~a~~~-~~~p~liev~~~~ 175 (183)
T cd02005 153 DEALKDALFN-RDKLSLIEVILPK 175 (183)
T ss_pred HHHHHHHHhc-CCCcEEEEEEcCc
Confidence 9999998751 3799999999864
No 88
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.24 E-value=7.4e-10 Score=123.16 Aligned_cols=210 Identities=16% Similarity=0.144 Sum_probs=147.2
Q ss_pred CCCCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCcCchhhH
Q 003948 505 FPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFDV 583 (784)
Q Consensus 505 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~G~dG~THq~~~dl 583 (784)
....++. -=+|.++++++.|+++.|.|.+++|.++.+..+.+.+ ..++.+.+|++++. .|+|. ...-|++....|+
T Consensus 46 ~~~~~vq-~EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~Lm~E~l-~~a~~~~~P~Vi~~~~R~~p-s~g~p~~~dq~D~ 122 (365)
T COG0674 46 VGGVFVQ-MESEIGAISAVIGASYAGARAFTATSGQGLLLMAEAL-GLAAGTETPLVIVVAQRPLP-STGLPIKGDQSDL 122 (365)
T ss_pred cCcEEEE-eccHHHHHHHHHHHHhhCcceEeecCCccHHHHHHHH-HHHHhccCCeEEEEeccCcC-CCcccccccHHHH
Confidence 3344444 3789999999999999999999999988877777776 67899999988877 55553 3333699999999
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHhC---CCCeEEEcCCCCC----ccc----------cCCCCCCCC-------
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVID---DRPSCFRFPRGNG----IGA----------VLPPNNKGT------- 639 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~---~~Pv~irl~r~~~----~~~----------~~p~~~~~~------- 639 (784)
.+.|.. ++.+++-+|.+|+..+...|++.. .-|+++.++.... ..+ .+++ ++.+
T Consensus 123 ~~~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~ 200 (365)
T COG0674 123 MAARDT-GFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPD-YEPYTALDPSP 200 (365)
T ss_pred HHHHcc-CceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccc-cCcccccCCCC
Confidence 888874 888888889999999999998843 3488776432100 000 0000 0000
Q ss_pred Ccccc--------------------------------------c----eeEee-eCCcEEEEEechhHHHHHHHHHHH-h
Q 003948 640 PLEIG--------------------------------------K----GRILM-EGDRVAILGYGSIVQQCVLAANML-K 675 (784)
Q Consensus 640 ~~~ig--------------------------------------k----~~vlr-eG~dvtIva~Gs~v~~aleAae~L-~ 675 (784)
+...| . ..+.. ++.+++||+||+....+.+++..+ +
T Consensus 201 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~~~~~~ 280 (365)
T COG0674 201 PVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAVVDLLR 280 (365)
T ss_pred CCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHHHHHHH
Confidence 00000 0 00111 456899999998887777776654 5
Q ss_pred cCCCcEEEeeccccCCCcHHHHHHHhccCC--eEEEEcCCCcCCcHH
Q 003948 676 SQDISVTVADARFCKPLDTDLIRQLANEHE--ILITVEEGSVGGFGS 720 (784)
Q Consensus 676 ~~GI~v~VId~~slkPlD~e~i~~~~~~~~--~vVvvEe~~~gG~gs 720 (784)
++|++++++.+|+++||+.+.+++.+++.+ .|+.+|-+ .|++++
T Consensus 281 ~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~-~g~~~~ 326 (365)
T COG0674 281 DKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEIS-LGGLAE 326 (365)
T ss_pred hcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccC-Cccchh
Confidence 789999999999999999999999998876 44444433 355443
No 89
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.24 E-value=1.2e-11 Score=123.87 Aligned_cols=127 Identities=19% Similarity=0.276 Sum_probs=90.1
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
|.|.+|.++|+|+|+++|. +++|||++|||+++ +...+|.+|.++++|+++||-||+...+-...+..
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~----- 116 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQA----- 116 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCCchheeccCC-----
Confidence 5688999999999999984 67899999999998 66688999999999999988888743210000000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.. . .... . .+... ..++...++++||+.+.. | ++.+++.+++
T Consensus 117 -~~---------~---------------------~~~~-~--~~~~~-~~~d~~~lA~a~G~~~~~-v--~~~~el~~al 158 (175)
T cd02009 117 -SF---------E---------------------DEFE-R--LFGTP-QGLDFEHLAKAYGLEYRR-V--SSLDELEQAL 158 (175)
T ss_pred -cc---------c---------------------chhh-h--hhcCC-CCCCHHHHHHHcCCCeee-C--CCHHHHHHHH
Confidence 00 0 0000 0 00000 135667789999998864 4 5899999999
Q ss_pred HHhhcCCCCCcEEEEEEec
Q 003948 411 QRVKEMPAPGPVLIHVVTE 429 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~ 429 (784)
+++.+ .++|++|+|.+.
T Consensus 159 ~~a~~--~~~p~lIev~v~ 175 (175)
T cd02009 159 ESALA--QDGPHVIEVKTD 175 (175)
T ss_pred HHHHh--CCCCEEEEEeCC
Confidence 99987 589999999863
No 90
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.22 E-value=3.4e-11 Score=140.49 Aligned_cols=128 Identities=21% Similarity=0.268 Sum_probs=97.4
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|.++|+|+|+++|.. ++.|||++|||+++ |..++|.+|.++++|+++||.||+.+
T Consensus 406 ~~GtMG~glPaAIGAkla~P----~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~-------------- 465 (550)
T COG0028 406 GLGTMGFGLPAAIGAKLAAP----DRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGY-------------- 465 (550)
T ss_pred CCccccchHHHHHHHHhhCC----CCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCcc--------------
Confidence 67999999999999999876 89999999999998 77889999999999999999999852
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
+.+|.+-+ .......+..++..+.+..++|+||+... .|+ +.++|.++|
T Consensus 466 ----------------g~v~~~q~------------~~~~~~~~~~~~~~~~f~klAea~G~~g~-~v~--~~~el~~al 514 (550)
T COG0028 466 ----------------GMVRQWQE------------LFYGGRYSGTDLGNPDFVKLAEAYGAKGI-RVE--TPEELEEAL 514 (550)
T ss_pred ----------------ccchHHHH------------HhcCCCcceeecCCccHHHHHHHcCCeeE-EeC--CHHHHHHHH
Confidence 12222211 11000011122222225678999999987 454 999999999
Q ss_pred HHhhcCCCCCcEEEEEEecCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG 431 (784)
+++.+ .++|++|+|.+.+.
T Consensus 515 ~~al~--~~~p~lidv~id~~ 533 (550)
T COG0028 515 EEALA--SDGPVLIDVVVDPE 533 (550)
T ss_pred HHHHh--CCCCEEEEEEecCc
Confidence 99998 68999999999865
No 91
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.20 E-value=1.9e-10 Score=111.86 Aligned_cols=125 Identities=24% Similarity=0.301 Sum_probs=100.1
Q ss_pred hhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCCeeEEEe-cHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCC
Q 003948 498 LNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT 576 (784)
Q Consensus 498 l~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~t-ys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~T 576 (784)
+-...++.+++.+..++.|++++++|.|++..|.+|++.+ +.+|+.++++++. .++..++||+++....+..+.++.+
T Consensus 26 l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~~~Pvl~i~~~~~~~~~~~~~ 104 (154)
T cd06586 26 LLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAEHLPVVFLIGARGISAQAKQT 104 (154)
T ss_pred HHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhcCCCEEEEeCCCChhhhccCc
Confidence 4333344689999999999999999999999877888886 5999999999986 7888999999998666654555778
Q ss_pred cCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCC
Q 003948 577 HCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPR 624 (784)
Q Consensus 577 Hq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r 624 (784)
||..++..+++.+|++.+..|++.++.. .+..|+. ...+|++|++|+
T Consensus 105 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 105 FQSMFDLGMYRSIPEANISSPSPAELPA-GIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred ccccCHHHHHHHhhheEEEeCCHHHHHH-HHHHHHHHHhcCCCCEEEEccC
Confidence 9999999999999999888887765444 4444444 346799998864
No 92
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.18 E-value=2.5e-10 Score=134.86 Aligned_cols=128 Identities=21% Similarity=0.361 Sum_probs=92.5
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
|.|++|.++|+|+|+++|.+ +++|||++|||+++ +..++|++|.++++|+++||.||+....-...++ ..
T Consensus 435 g~gsmG~~l~~aiGa~la~~----~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~---~~- 504 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVARP----GAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAET---VK- 504 (578)
T ss_pred CccccccHHHHHHHHHhhCC----CCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccc---cc-
Confidence 56889999999999998854 78999999999997 7789999999999999999999973211000000 00
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
| +.. ....++-..++..++++||+.+.. | ++.++|.+++
T Consensus 505 ---------------~--------------~~~---------~~~~~~~~~d~~~~A~a~G~~~~~-v--~~~~el~~al 543 (578)
T PRK06112 505 ---------------F--------------GTH---------TDACHFAAVDHAAIARACGCDGVR-V--EDPAELAQAL 543 (578)
T ss_pred ---------------c--------------CCc---------cccCcCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHHH
Confidence 0 000 000011123455679999998873 4 5799999999
Q ss_pred HHhhcCCCCCcEEEEEEecCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG 431 (784)
+++.+ .++|++|||++.+.
T Consensus 544 ~~a~~--~~gp~lIev~~~~~ 562 (578)
T PRK06112 544 AAAMA--APGPTLIEVITDPS 562 (578)
T ss_pred HHHHh--CCCCEEEEEEcCcc
Confidence 99986 57999999999754
No 93
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.16 E-value=1.5e-10 Score=135.69 Aligned_cols=128 Identities=17% Similarity=0.277 Sum_probs=94.9
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+.+
T Consensus 406 ~~g~mG~~lpaaiGa~la~~----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~y~~------------ 467 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVRP----NTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNGYNM------------ 467 (539)
T ss_pred CccccccHHHHHHHHHHhCC----CCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCcchH------------
Confidence 67899999999999999864 78999999999999 6667899999999999999888874211
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
+|.. +..... +....++-..++..++++||+.+... ++.++|.+++
T Consensus 468 ------------------~~~~------------~~~~~~-~~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al 513 (539)
T TIGR02418 468 ------------------VEFQ------------EEMKYQ-RSSGVDFGPIDFVKYAESFGAKGLRV---ESPDQLEPTL 513 (539)
T ss_pred ------------------HHHH------------HHHhcC-CcccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 1100 000000 00011222456778899999988644 6899999999
Q ss_pred HHhhcCCCCCcEEEEEEecCCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+++.+ .++|++|+|.+.+..
T Consensus 514 ~~a~~--~~~p~lIev~v~~~~ 533 (539)
T TIGR02418 514 RQAME--VEGPVVVDIPVDYSD 533 (539)
T ss_pred HHHHh--CCCCEEEEEEecCcc
Confidence 99986 579999999986443
No 94
>PRK08322 acetolactate synthase; Reviewed
Probab=99.16 E-value=1.2e-09 Score=128.32 Aligned_cols=129 Identities=14% Similarity=0.266 Sum_probs=95.1
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|+++|+|+|+++|.+ +++|+|++|||+++ +...+|.+|.+++.|+++||.||+...+
T Consensus 404 ~~g~mG~~lpaaiGa~la~p----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g~------------ 465 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVHP----DRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYGM------------ 465 (547)
T ss_pred CcccccchhHHHHHHHHhCC----CCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcch------------
Confidence 67899999999999999864 78999999999999 6667899999999999999988874211
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
++..- .... .+.+.-++-.+++..++++||+++... ++.++|.+++
T Consensus 466 ------------------~~~~~------------~~~~-~~~~~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al 511 (547)
T PRK08322 466 ------------------IRWKQ------------ENMG-FEDFGLDFGNPDFVKYAESYGAKGYRV---ESADDLLPTL 511 (547)
T ss_pred ------------------HHHHH------------Hhhc-CCcccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 11100 0000 000111122356778899999998744 6899999999
Q ss_pred HHhhcCCCCCcEEEEEEecCCCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKGKG 433 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG~G 433 (784)
+++.+ .++|++|+|.+.....
T Consensus 512 ~~a~~--~~~p~lIev~v~~~~~ 532 (547)
T PRK08322 512 EEALA--QPGVHVIDCPVDYSEN 532 (547)
T ss_pred HHHHh--CCCCEEEEEEecCccC
Confidence 99876 5799999999975444
No 95
>PRK08266 hypothetical protein; Provisional
Probab=99.15 E-value=1.7e-10 Score=135.26 Aligned_cols=129 Identities=24% Similarity=0.359 Sum_probs=92.8
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|++++. ++++|+|++|||+++.+ .++|.+|.++++|+++||.||+.+..
T Consensus 400 ~~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~------------ 461 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGN------------ 461 (542)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchH------------
Confidence 4589999999999998875 48899999999999954 68899999999999998888864210
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
++..-+.. -+ .+ ....++-.++...++++||..+. .| .+.++|.+++
T Consensus 462 ------------------~~~~~~~~---~~-------~~--~~~~~~~~~d~~~la~a~G~~~~-~v--~~~~el~~al 508 (542)
T PRK08266 462 ------------------VRRDQKRR---FG-------GR--VVASDLVNPDFVKLAESFGVAAF-RV--DSPEELRAAL 508 (542)
T ss_pred ------------------HHHHHHHh---cC-------CC--cccCCCCCCCHHHHHHHcCCeEE-Ee--CCHHHHHHHH
Confidence 00000000 00 00 00001112456678999999876 44 5789999999
Q ss_pred HHhhcCCCCCcEEEEEEecCCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+++.+ .++|++|+|.|.++.
T Consensus 509 ~~a~~--~~~p~liev~i~~~~ 528 (542)
T PRK08266 509 EAALA--HGGPVLIEVPVPRGS 528 (542)
T ss_pred HHHHh--CCCcEEEEEEecCCC
Confidence 99876 578999999998775
No 96
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.15 E-value=1.6e-10 Score=136.35 Aligned_cols=128 Identities=20% Similarity=0.333 Sum_probs=94.7
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|+|++|||+++ +...++.+|.++++|+++||.||+.+..
T Consensus 406 ~~gsmG~~~paAiGa~la~p----~~~vv~i~GDGsf~--~~~~el~Ta~~~~lpv~~vV~NN~~~g~------------ 467 (578)
T PRK06546 406 RHGSMANALPHAIGAQLADP----GRQVISMSGDGGLS--MLLGELLTVKLYDLPVKVVVFNNSTLGM------------ 467 (578)
T ss_pred CcccccchhHHHHHHHHhCC----CCcEEEEEcCchHh--hhHHHHHHHHHhCCCeEEEEEECCcccc------------
Confidence 46899999999999999875 78999999999999 4556799999999999999999985221
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
++..-. ..+. .....++-..++..++++||+++. .| ++.++|.+++
T Consensus 468 ------------------i~~~q~----~~~~---------~~~~~~~~~~df~~lA~a~G~~~~-~v--~~~~el~~al 513 (578)
T PRK06546 468 ------------------VKLEML----VDGL---------PDFGTDHPPVDYAAIAAALGIHAV-RV--EDPKDVRGAL 513 (578)
T ss_pred ------------------HHHHHH----hcCC---------CcccccCCCCCHHHHHHHCCCeeE-Ee--CCHHHHHHHH
Confidence 000000 0000 001111223566778999999876 44 5899999999
Q ss_pred HHhhcCCCCCcEEEEEEecCCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+++.+ .++|++|+|.+.+..
T Consensus 514 ~~a~~--~~gp~lIev~~~~~~ 533 (578)
T PRK06546 514 REAFA--HPGPALVDVVTDPNA 533 (578)
T ss_pred HHHHh--CCCCEEEEEEeCCCc
Confidence 99986 589999999997654
No 97
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.15 E-value=1.7e-10 Score=117.51 Aligned_cols=133 Identities=17% Similarity=0.250 Sum_probs=89.9
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCc-ccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 003948 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGA-MTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVG 331 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGa-l~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~ 331 (784)
|.+|.++++|+|+++|.+ +++||+++|||+ ++ +...+|.+|.+++.|+++||.||+.+..-...+. .....+
T Consensus 51 g~mG~glpaAiGa~la~p----~r~Vv~i~GDGs~f~--m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~-~~~~~~ 123 (193)
T cd03375 51 TLHGRALAVATGVKLANP----DLTVIVVSGDGDLAA--IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQAS-PTTPEG 123 (193)
T ss_pred hhhccHHHHHHHHHHhCC----CCeEEEEeccchHhh--ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccC-CCCCCC
Confidence 788999999999998864 899999999999 44 4557799999999999999999985332110000 000000
Q ss_pred hhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHH
Q 003948 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ 411 (784)
Q Consensus 332 ~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~ 411 (784)
.- ... ..+....-.++...+++++|..++..+.-.+.++|.++++
T Consensus 124 ~~------------------------------~~~-----~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~ 168 (193)
T cd03375 124 FK------------------------------TKT-----TPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIK 168 (193)
T ss_pred Cc------------------------------ccC-----CCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHH
Confidence 00 000 0000000013455779999998753334478999999999
Q ss_pred HhhcCCCCCcEEEEEEec
Q 003948 412 RVKEMPAPGPVLIHVVTE 429 (784)
Q Consensus 412 ~ak~~~~~~P~lI~v~T~ 429 (784)
++.+ .++|++|++.+.
T Consensus 169 ~al~--~~gp~vIev~~~ 184 (193)
T cd03375 169 KAIQ--HKGFSFVEVLSP 184 (193)
T ss_pred HHHh--cCCCEEEEEECC
Confidence 9987 589999999875
No 98
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.15 E-value=1.7e-10 Score=121.02 Aligned_cols=139 Identities=19% Similarity=0.285 Sum_probs=91.7
Q ss_pred CcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcc-cchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAM-TAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal-~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
.|.+|.++++|+|.+++. ++++|||++|||++ + +..++|.+|.+++.|+++||.||+...+. ..+.......
T Consensus 61 ~gsmG~GlpaAiGa~~a~----p~r~VV~i~GDG~~~~--m~~~eL~ta~~~~~pv~~vVlNN~~yg~t-g~q~~~~~~~ 133 (235)
T cd03376 61 AAAVASGIEAALKALGRG----KDITVVAFAGDGGTAD--IGFQALSGAAERGHDILYICYDNEAYMNT-GIQRSGSTPY 133 (235)
T ss_pred HHHHHHHHHHHHHHhccC----CCCeEEEEEcCchHHh--hHHHHHHHHHHcCCCeEEEEECCcccccC-CCCCCCCCCC
Confidence 468888888888876553 48899999999995 5 55678999999999999999999854321 1111000000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
+..+ ..+ ..+... . ....-.++...+++++|+.++..+.-++.+++.+++
T Consensus 134 ~~~~------~~~---------------~~g~~~---~------~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al 183 (235)
T cd03376 134 GAWT------TTT---------------PVGKVS---F------GKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKV 183 (235)
T ss_pred CCEe------ecC---------------CCCccc---c------ccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHH
Confidence 0000 000 000000 0 000112455678999999887656678999999999
Q ss_pred HHhhcCCCCCcEEEEEEec
Q 003948 411 QRVKEMPAPGPVLIHVVTE 429 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~ 429 (784)
+++.+ .++|++|++.+.
T Consensus 184 ~~a~~--~~gP~lIev~~~ 200 (235)
T cd03376 184 KKALS--IEGPAYIHILSP 200 (235)
T ss_pred HHHHh--CCCCEEEEEECC
Confidence 99987 579999999875
No 99
>PRK07064 hypothetical protein; Provisional
Probab=99.14 E-value=1.6e-10 Score=135.59 Aligned_cols=125 Identities=20% Similarity=0.317 Sum_probs=92.4
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 003948 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~ 332 (784)
|++|.++|+|+|+++|.+ +++|+|++|||+++ +...+|.+|.++++|+++||.||+.+
T Consensus 405 g~mG~~lpaAiGa~lA~p----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~y---------------- 462 (544)
T PRK07064 405 GGIGQGLAMAIGAALAGP----GRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGGY---------------- 462 (544)
T ss_pred CccccccchhhhhhhhCc----CCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCChh----------------
Confidence 789999999999999864 88999999999998 66678999999999999998888742
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHH
Q 003948 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR 412 (784)
Q Consensus 333 l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ 412 (784)
+.+|.. +......+...-++-.+++..++++||+++.. | ++.++|.+++++
T Consensus 463 --------------g~~~~~------------~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~eL~~al~~ 513 (544)
T PRK07064 463 --------------GVIRNI------------QDAQYGGRRYYVELHTPDFALLAASLGLPHWR-V--TSADDFEAVLRE 513 (544)
T ss_pred --------------HHHHHH------------HHHhcCCccccccCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHHHHH
Confidence 111111 00000000011122235667889999998764 3 689999999999
Q ss_pred hhcCCCCCcEEEEEEecC
Q 003948 413 VKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 413 ak~~~~~~P~lI~v~T~k 430 (784)
+.+ .++|++|+|.+..
T Consensus 514 a~~--~~~p~lIeV~~~~ 529 (544)
T PRK07064 514 ALA--KEGPVLVEVDMLS 529 (544)
T ss_pred HHc--CCCCEEEEEEccc
Confidence 986 5799999999863
No 100
>PRK07524 hypothetical protein; Provisional
Probab=99.14 E-value=2.3e-10 Score=133.96 Aligned_cols=129 Identities=21% Similarity=0.253 Sum_probs=95.1
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|.++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+
T Consensus 405 ~~g~mG~~lp~aiGa~lA~p----~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~-------------- 464 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALGAP----ERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGY-------------- 464 (535)
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCch--------------
Confidence 56999999999999999864 88999999999998 55566999999999999999888742
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
+.++...+.. +. .....++..+++..++++||+++. .| .+.++|.+++
T Consensus 465 ----------------g~i~~~~~~~----~~---------~~~~~~~~~~d~~~~A~a~G~~~~-~v--~~~~el~~al 512 (535)
T PRK07524 465 ----------------GEIRRYMVAR----DI---------EPVGVDPYTPDFIALARAFGCAAE-RV--ADLEQLQAAL 512 (535)
T ss_pred ----------------HHHHHHHHHh----cC---------CccccCCCCCCHHHHHHHCCCcEE-Ee--CCHHHHHHHH
Confidence 1111110000 00 000111223566788999999876 44 4899999999
Q ss_pred HHhhcCCCCCcEEEEEEecCCCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKGKG 433 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG~G 433 (784)
+++.+ .++|++|+|++.+-++
T Consensus 513 ~~a~~--~~~p~liev~~~~~~~ 533 (535)
T PRK07524 513 RAAFA--RPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHh--CCCCEEEEEECCcccc
Confidence 99987 5899999999976554
No 101
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.13 E-value=2.2e-10 Score=134.84 Aligned_cols=128 Identities=17% Similarity=0.231 Sum_probs=93.3
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|+++|+|+|++++.+ +++|||++|||+++ +..++|.+|.++++|+++||.||+.+.
T Consensus 413 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~~------------- 473 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLLFP----ERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMYG------------- 473 (557)
T ss_pred CCccccchHHHHHHHHHhCC----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcch-------------
Confidence 45999999999999998864 88999999999998 777899999999999999999998421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.++..-+.. -+.. ....++-.++...++++||+++. .| ++.++|.+++
T Consensus 474 -----------------~~~~~~~~~---~~~~---------~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~el~~al 521 (557)
T PRK08199 474 -----------------TIRMHQERE---YPGR---------VSGTDLTNPDFAALARAYGGHGE-TV--ERTEDFAPAF 521 (557)
T ss_pred -----------------HHHHHHHHh---cCCc---------cccccCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 111000000 0000 00011112456678999999876 44 4799999999
Q ss_pred HHhhcCCCCCcEEEEEEecCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG 431 (784)
+++.+ .++|++|+|.|.+.
T Consensus 522 ~~a~~--~~gp~li~v~~~~~ 540 (557)
T PRK08199 522 ERALA--SGKPALIEIRIDPE 540 (557)
T ss_pred HHHHh--CCCCEEEEEEeCHH
Confidence 99986 58999999999643
No 102
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.13 E-value=2.4e-10 Score=135.29 Aligned_cols=129 Identities=13% Similarity=0.281 Sum_probs=95.0
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+.
T Consensus 435 ~~gsmG~glpaaiGa~lA~p----~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~~~------------- 495 (587)
T PRK06965 435 GLGTMGVGLPYAMGIKMAHP----DDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRYLG------------- 495 (587)
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCcch-------------
Confidence 56899999999999999964 78999999999998 677889999999999999999998421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhc--cCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL--ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~--~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
.++..- ..... ..+.... ..+++..+.++||+++... ++.++|.+
T Consensus 496 -----------------~i~~~q------------~~~~~-~~~~~~~~~~~~d~~~iA~a~G~~~~~v---~~~~eL~~ 542 (587)
T PRK06965 496 -----------------MVRQWQ------------EIEYS-KRYSHSYMDALPDFVKLAEAYGHVGMRI---EKTSDVEP 542 (587)
T ss_pred -----------------HHHHHH------------HHhcC-CCccccCCCCCCCHHHHHHHCCCEEEEE---CCHHHHHH
Confidence 111110 00000 0000001 1256678899999987644 78999999
Q ss_pred HHHHhhcCCCCCcEEEEEEecCCC
Q 003948 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+++++.+. .++|++|+|.+.+..
T Consensus 543 al~~a~~~-~~~p~lieV~i~~~~ 565 (587)
T PRK06965 543 ALREALRL-KDRTVFLDFQTDPTE 565 (587)
T ss_pred HHHHHHhc-CCCcEEEEEEecccc
Confidence 99998752 368999999997543
No 103
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.13 E-value=2e-10 Score=135.55 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=94.1
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|+|++|||+++ |...+|.+|.++++|+++||.||+.+.+
T Consensus 406 ~~G~mG~~lpaAiGa~la~p----~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~------------ 467 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAHP----GRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSVLGF------------ 467 (574)
T ss_pred CcccccchHHHHHHHHHhCC----CCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCcccc------------
Confidence 56899999999999999864 78999999999998 6667899999999999888888874211
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
++.. +.. ........++-.+++..++++||+++... ++.++|.+++
T Consensus 468 ------------------i~~~------------~~~-~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al 513 (574)
T PRK09124 468 ------------------VAME------------MKA-GGYLTDGTDLHNPDFAAIAEACGITGIRV---EKASELDGAL 513 (574)
T ss_pred ------------------HHHH------------HHh-cCCccccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 0000 000 00000111222356778899999988643 6899999999
Q ss_pred HHhhcCCCCCcEEEEEEecCCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+++.+ .++|++|+|.+.+..
T Consensus 514 ~~a~~--~~~p~lIev~i~~~~ 533 (574)
T PRK09124 514 QRAFA--HDGPALVDVVTAKQE 533 (574)
T ss_pred HHHHh--CCCCEEEEEEecCcc
Confidence 99986 579999999987543
No 104
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.12 E-value=5.9e-10 Score=119.86 Aligned_cols=140 Identities=19% Similarity=0.267 Sum_probs=106.0
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCC-CeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCC
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKN-NNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~-~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~ 329 (784)
-....|.+++.|.|++.|.+.++++ ..|++++|||+...+-. |+|++|..++.|+++||.||+. ...|..|..++.+
T Consensus 67 i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~-~~~TGgQ~S~~Tp 144 (300)
T PRK11864 67 LHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEA-YMNTGIQRSSSTP 144 (300)
T ss_pred eeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCee-eecCCCCCCCCCc
Confidence 3567788899999999999888765 45666999999988874 9999999999999999999995 4456666666666
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
.++..+. ...|.... ..+-..+..++|..|+..++--|+.++.++
T Consensus 145 ~ga~t~t---------------------sp~G~~~~--------------kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~ 189 (300)
T PRK11864 145 YGAWTTT---------------------TPGGKREH--------------KKPVPDIMAAHKVPYVATASIAYPEDFIRK 189 (300)
T ss_pred CCCcccc---------------------CCCCCcCC--------------CCCHHHHHHHcCCCEEEEEeCCCHHHHHHH
Confidence 6643110 00111100 012234578899999888888999999999
Q ss_pred HHHhhcCCCCCcEEEEEEec
Q 003948 410 FQRVKEMPAPGPVLIHVVTE 429 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~ 429 (784)
+++|.+ .++|.+|++.+.
T Consensus 190 i~~A~~--~~Gps~I~~~sp 207 (300)
T PRK11864 190 LKKAKE--IRGFKFIHLLAP 207 (300)
T ss_pred HHHHHh--CCCCEEEEEeCC
Confidence 999987 589999999885
No 105
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.12 E-value=2.9e-10 Score=134.64 Aligned_cols=126 Identities=18% Similarity=0.264 Sum_probs=94.0
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+
T Consensus 428 ~~gsmG~glpaaiGa~lA~p----~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~y-------------- 487 (595)
T PRK09107 428 GLGTMGYGLPAALGVQIAHP----DALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQYM-------------- 487 (595)
T ss_pred CchhhhhhHHHHHHHHHhCC----CCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 56999999999999999864 88999999999998 66678999999999999999999842
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhh-hc-cCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR-GL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r-~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
+.+|..-.... +. .+.. .. ..+++..++++||.++.. | .+.++|.+
T Consensus 488 ----------------~~i~~~q~~~~---~~----------~~~~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~el~~ 535 (595)
T PRK09107 488 ----------------GMVRQWQQLLH---GN----------RLSHSYTEAMPDFVKLAEAYGAVGIR-C--EKPGDLDD 535 (595)
T ss_pred ----------------HHHHHHHHHHh---CC----------ccccccCCCCCCHHHHHHHCCCeEEE-E--CCHHHHHH
Confidence 11221100000 00 0000 00 124667889999998874 3 68999999
Q ss_pred HHHHhhcCCCCCcEEEEEEecC
Q 003948 409 IFQRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~k 430 (784)
+++++.+ .++|++|+|.+.+
T Consensus 536 al~~a~~--~~~p~lIeV~i~~ 555 (595)
T PRK09107 536 AIQEMID--VDKPVIFDCRVAN 555 (595)
T ss_pred HHHHHHh--CCCCEEEEEEecC
Confidence 9999986 5799999999974
No 106
>PRK08611 pyruvate oxidase; Provisional
Probab=99.12 E-value=2.8e-10 Score=134.39 Aligned_cols=128 Identities=20% Similarity=0.270 Sum_probs=94.8
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++++|+|+++|.+ +++|||++|||+++ +...+|.+|.+++.|+++||.||+.+.
T Consensus 406 ~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~~g------------- 466 (576)
T PRK08611 406 WLGTMGCGLPGAIAAKIAFP----DRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQLA------------- 466 (576)
T ss_pred CchhhhhhHHHHHHHHHhCC----CCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCcch-------------
Confidence 46899999999999999864 78999999999999 566889999999999988888887421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.++.. +... ....+..++-..++..++++||.++... ++.++|.+++
T Consensus 467 -----------------~i~~~------------q~~~-~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al 513 (576)
T PRK08611 467 -----------------FIKYE------------QQAA-GELEYAIDLSDMDYAKFAEACGGKGYRV---EKAEELDPAF 513 (576)
T ss_pred -----------------HHHHH------------HHHh-cCCcccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 11100 0000 0001111222356778899999988744 7999999999
Q ss_pred HHhhcCCCCCcEEEEEEecCCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+++.+ .++|++|+|.+.+..
T Consensus 514 ~~a~~--~~~p~lIeV~vd~~~ 533 (576)
T PRK08611 514 EEALA--QDKPVIIDVYVDPNA 533 (576)
T ss_pred HHHHh--CCCCEEEEEEeCCcc
Confidence 99986 589999999997544
No 107
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.12 E-value=2.7e-10 Score=133.77 Aligned_cols=127 Identities=17% Similarity=0.313 Sum_probs=94.2
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++++|+|+++|.+ ++++|+|++|||+++ +...+|.+|.++++|+++||-||+...
T Consensus 394 ~~g~mG~glpaaiGa~la~p---~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~~g------------- 455 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAVE---NKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSKLG------------- 455 (549)
T ss_pred CcchhhhhHHHHHHHHhcCC---CCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCccc-------------
Confidence 56999999999999998862 168999999999998 667889999999999999998887421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.++.. +... ..+.+..++..+++.+++++||+++... ++.++|..++
T Consensus 456 -----------------~i~~~------------q~~~-~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 502 (549)
T PRK06457 456 -----------------MIKFE------------QEVM-GYPEWGVDLYNPDFTKIAESIGFKGFRL---EEPKEAEEII 502 (549)
T ss_pred -----------------hHHHH------------HHHh-cCCcccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 11100 0000 0001111222356778899999998743 6899999999
Q ss_pred HHhhcCCCCCcEEEEEEecC
Q 003948 411 QRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~k 430 (784)
+++.+ .++|++|+|+|.+
T Consensus 503 ~~a~~--~~~p~lIeV~i~~ 520 (549)
T PRK06457 503 EEFLN--TKGPAVLDAIVDP 520 (549)
T ss_pred HHHHh--CCCCEEEEEEeCc
Confidence 99986 5789999999964
No 108
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.11 E-value=3.2e-10 Score=133.13 Aligned_cols=129 Identities=19% Similarity=0.279 Sum_probs=94.5
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.. +++|+|++|||+++ +...+|.+|.+++.|+++||.||+...
T Consensus 399 ~~g~mG~glpaAiGa~la~p----~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~~~------------- 459 (548)
T PRK08978 399 GLGTMGFGLPAAIGAQVARP----DDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQRLG------------- 459 (548)
T ss_pred chhhhhchHHHHHHHHHhCC----CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccH-------------
Confidence 56999999999999999864 78999999999998 566789999999999999998887421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
.+|.. +......+....++ -.+++..++++||+++... .+.++|.++
T Consensus 460 -----------------~~~~~------------~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~a 507 (548)
T PRK08978 460 -----------------MVRQW------------QQLFFDERYSETDLSDNPDFVMLASAFGIPGQTI---TRKDQVEAA 507 (548)
T ss_pred -----------------HHHHH------------HHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 11111 00000000000111 1256678899999988744 689999999
Q ss_pred HHHhhcCCCCCcEEEEEEecCCC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
++++.+ .++|++|+|.+.+..
T Consensus 508 l~~a~~--~~~p~lIeV~id~~~ 528 (548)
T PRK08978 508 LDTLLN--SEGPYLLHVSIDELE 528 (548)
T ss_pred HHHHHh--CCCCEEEEEEecCcc
Confidence 999986 579999999997543
No 109
>PRK05858 hypothetical protein; Provisional
Probab=99.11 E-value=4e-10 Score=132.18 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=94.8
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++++|+|+++|.+ +++|||++|||+++ +...++.+|.++++|+++||.||+.+.
T Consensus 405 ~~gsmG~~lp~aiGa~la~p----~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~y~------------- 465 (542)
T PRK05858 405 PFGCLGTGPGYALAARLARP----SRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGIWG------------- 465 (542)
T ss_pred CccccccchhHHHHHHHhCC----CCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCchh-------------
Confidence 46899999999999999874 88999999999999 666789999999999999999997421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhcc-CCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI-SASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~-~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
.++...... -+. ....++. ..++..++++||..+.. | .+.++|.++
T Consensus 466 -----------------~~~~~~~~~---~~~----------~~~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~eL~~a 512 (542)
T PRK05858 466 -----------------LEKHPMEAL---YGY----------DVAADLRPGTRYDEVVRALGGHGEL-V--TVPAELGPA 512 (542)
T ss_pred -----------------hHHHHHHHh---cCC----------ccccccCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHH
Confidence 111110000 000 0011121 35667889999998763 3 689999999
Q ss_pred HHHhhcCCCCCcEEEEEEecCCC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
++++.+ .++|++|++.|.+..
T Consensus 513 l~~a~~--~~~p~lIev~~~~~~ 533 (542)
T PRK05858 513 LERAFA--SGVPYLVNVLTDPSV 533 (542)
T ss_pred HHHHHh--CCCcEEEEEEECCCc
Confidence 999876 589999999997553
No 110
>PLN02470 acetolactate synthase
Probab=99.11 E-value=3.1e-10 Score=134.27 Aligned_cols=137 Identities=17% Similarity=0.242 Sum_probs=93.7
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++|+|+|+++|.+ +++|+|++|||+++ |...+|.+|.++++|+++||-||+.+.
T Consensus 424 ~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~yg------------- 484 (585)
T PLN02470 424 GLGAMGFGLPAAIGAAAANP----DAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQHLG------------- 484 (585)
T ss_pred ccccccchHHHHHHHHHhCC----CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcch-------------
Confidence 56999999999999999874 78999999999998 666889999999999999888887421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.++..-+.. .+............ ......+++..++++||+++... ++.++|.+++
T Consensus 485 -----------------~i~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~d~~~iA~a~G~~~~~v---~~~~el~~al 540 (585)
T PLN02470 485 -----------------MVVQWEDRF---YKANRAHTYLGDPD-AEAEIFPDFLKFAEGCKIPAARV---TRKSDLREAI 540 (585)
T ss_pred -----------------HHHHHHHHH---hCCceeeeecCccc-cccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 111110000 00000000000000 00001146678899999987643 6899999999
Q ss_pred HHhhcCCCCCcEEEEEEecCCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+++.+ .++|++|+|.+.+..
T Consensus 541 ~~a~~--~~~p~lieV~i~~~~ 560 (585)
T PLN02470 541 QKMLD--TPGPYLLDVIVPHQE 560 (585)
T ss_pred HHHHh--CCCCEEEEEEeCCcc
Confidence 99986 579999999997533
No 111
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.10 E-value=3.9e-10 Score=132.96 Aligned_cols=127 Identities=17% Similarity=0.248 Sum_probs=93.0
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++++|+|+++|.+ +++|+|++|||+++ +...++.+|.++++|+++||.||+.+..
T Consensus 420 ~~gsmG~~lp~aiGa~lA~p----~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~~------------ 481 (570)
T PRK06725 420 GLGTMGFGFPAAIGAQLAKE----EELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLGM------------ 481 (570)
T ss_pred CcccccchhhHHHhhHhhcC----CCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccHH------------
Confidence 56999999999999999864 88999999999997 5567799999999999999999985211
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
++..-... -+. .....++-.++...++++||.+.. .| ++.+++.+++
T Consensus 482 ------------------~~~~q~~~---~~~---------~~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~~l~~al 528 (570)
T PRK06725 482 ------------------VRQWQEMF---YEN---------RLSESKIGSPDFVKVAEAYGVKGL-RA--TNSTEAKQVM 528 (570)
T ss_pred ------------------HHHHHHHh---cCC---------ccccCcCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 11000000 000 000001113456678999999886 44 6899999999
Q ss_pred HHhhcCCCCCcEEEEEEecC
Q 003948 411 QRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~k 430 (784)
+++.+ .++|++|+|.+..
T Consensus 529 ~~a~~--~~~p~liev~id~ 546 (570)
T PRK06725 529 LEAFA--HEGPVVVDFCVEE 546 (570)
T ss_pred HHHHh--CCCCEEEEEEeCC
Confidence 99987 5899999999974
No 112
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.10 E-value=4e-10 Score=133.05 Aligned_cols=176 Identities=17% Similarity=0.208 Sum_probs=114.0
Q ss_pred CCcHHHHHHHHhhccCCCCcEEEeCCCchH-HHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHH
Q 003948 185 NLGVVELTLALHRVFNTPDDKIIWDVGHQA-YVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263 (784)
Q Consensus 185 slg~~el~vaL~~~~~~p~D~~i~s~GH~~-y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~Av 263 (784)
.+....++..|...+ .+++.++.|.|-.. +....+. +++.+. -...-+.|++|+++|+|+
T Consensus 371 ~i~~~~~~~~l~~~l-~~d~ivv~d~G~~~~~~~~~~~--------~~~p~~----------~~~~~~~g~mG~glpaai 431 (574)
T PRK07979 371 KIKPQAVIETLWRLT-KGDAYVTSDVGQHQMFAALYYP--------FDKPRR----------WINSGGLGTMGFGLPAAL 431 (574)
T ss_pred CcCHHHHHHHHHhhc-CCCEEEEeCCcHHHHHHHHhcc--------cCCCCe----------EEeCCCccchhhHHHHHH
Confidence 466666666665544 23456777776433 3332211 111100 011125599999999999
Q ss_pred HHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhh
Q 003948 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQAS 343 (784)
Q Consensus 264 G~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~ 343 (784)
|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+
T Consensus 432 Ga~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~y--------------------------- 478 (574)
T PRK07979 432 GVKMALP----EETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRYL--------------------------- 478 (574)
T ss_pred HHHHhCC----CCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCchh---------------------------
Confidence 9999965 78999999999998 67788999999999999999999842
Q ss_pred hhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcC-CCCCc
Q 003948 344 TNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM-PAPGP 421 (784)
Q Consensus 344 ~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~-~~~~P 421 (784)
+.++..-+... .+ +.....+ -.+++..++++||.+.... .+.++|.++++++.+. ..++|
T Consensus 479 ---g~i~~~q~~~~--~~----------~~~~~~~~~~~d~~~iA~a~G~~g~~v---~~~~eL~~al~~a~~~~~~~~p 540 (574)
T PRK07979 479 ---GMVKQWQDMIY--SG----------RHSQSYMQSLPDFVRLAEAYGHVGIQI---SHPDELESKLSEALEQVRNNRL 540 (574)
T ss_pred ---hHHHHHHHHhc--CC----------ccccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHhccCCCCc
Confidence 11221100000 00 0000011 1256678899999987643 6899999999998752 13789
Q ss_pred EEEEEEecC
Q 003948 422 VLIHVVTEK 430 (784)
Q Consensus 422 ~lI~v~T~k 430 (784)
.+|+|.+.+
T Consensus 541 ~lIeV~i~~ 549 (574)
T PRK07979 541 VFVDVTVDG 549 (574)
T ss_pred EEEEEEECC
Confidence 999999974
No 113
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.10 E-value=3.8e-10 Score=133.14 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=93.7
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+.
T Consensus 419 ~~g~mG~glpaAiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~yg------------- 479 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLARP----DKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRTLG------------- 479 (572)
T ss_pred CcccccchhHHHHHHHHhCC----CCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCchH-------------
Confidence 56999999999999999864 78999999999999 556789999999999999999998421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhcc-CCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI-SASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~-~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
.++.. ++.....+....++. ..++..++++||.++... ++.++|.++
T Consensus 480 -----------------~i~~~------------q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~a 527 (572)
T PRK06456 480 -----------------LVRQV------------QDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNV---TTYEDIEKS 527 (572)
T ss_pred -----------------HHHHH------------HHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEe---CCHHHHHHH
Confidence 11111 000000000000111 246678899999987643 789999999
Q ss_pred HHHhhcCCCCCcEEEEEEecC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~k 430 (784)
|+++.+ .++|++|+|.+.+
T Consensus 528 l~~a~~--~~~p~lIev~v~~ 546 (572)
T PRK06456 528 LKSAIK--EDIPAVIRVPVDK 546 (572)
T ss_pred HHHHHh--CCCCEEEEEEeCc
Confidence 999986 5899999999975
No 114
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.10 E-value=3.7e-10 Score=134.38 Aligned_cols=129 Identities=20% Similarity=0.277 Sum_probs=94.5
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|.++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+.
T Consensus 432 ~~g~mG~glpaAiGA~lA~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~g------------- 492 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVALP----DEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQG------------- 492 (616)
T ss_pred CccccccHHHHHHHHHHhCC----CCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcch-------------
Confidence 56899999999999999864 88999999999999 667789999999999999999998521
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhc--cCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL--ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~--~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
.++..-+... +. .....++ -.+++..++++||.+++. | ++.++|.+
T Consensus 493 -----------------~i~~~q~~~~---~~---------~~~~~~~~~~~~d~~~~A~a~G~~g~~-V--~~~~el~~ 540 (616)
T PRK07418 493 -----------------MVRQWQESFY---GE---------RYSASNMEPGMPDFVKLAEAFGVKGMV-I--SERDQLKD 540 (616)
T ss_pred -----------------HHHHHHHHhc---CC---------CceeecCCCCCCCHHHHHHHCCCeEEE-e--CCHHHHHH
Confidence 1111100000 00 0000011 124667889999998874 4 68999999
Q ss_pred HHHHhhcCCCCCcEEEEEEecCCC
Q 003948 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+|+++.+ .++|++|+|.+.+..
T Consensus 541 al~~a~~--~~~p~lIeV~i~~~~ 562 (616)
T PRK07418 541 AIAEALA--HDGPVLIDVHVRRDE 562 (616)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999986 578999999997543
No 115
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.10 E-value=4e-10 Score=133.00 Aligned_cols=175 Identities=15% Similarity=0.222 Sum_probs=113.3
Q ss_pred CCcHHHHHHHHhhccCCCCcEEEeCCCchH-HHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHH
Q 003948 185 NLGVVELTLALHRVFNTPDDKIIWDVGHQA-YVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263 (784)
Q Consensus 185 slg~~el~vaL~~~~~~p~D~~i~s~GH~~-y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~Av 263 (784)
.+....++..|...+ .+++.++.|.|... +....+. +++.++ | ...-+.|++|+++|+|+
T Consensus 371 ~i~~~~~~~~l~~~l-~~d~ivv~d~G~~~~~~~~~~~--------~~~~~~---~-------~~~~~~g~mG~glpaai 431 (572)
T PRK08979 371 RIKPQQVIETLYKLT-NGDAYVASDVGQHQMFAALYYP--------FDKPRR---W-------INSGGLGTMGFGLPAAM 431 (572)
T ss_pred CcCHHHHHHHHHHhc-CCCeEEEECCcHHHHHHHHhcC--------cCCCCe---E-------EccCCcccccchhhHHH
Confidence 355566666666544 23455678887644 3322221 111111 1 01125589999999999
Q ss_pred HHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhh
Q 003948 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQAS 343 (784)
Q Consensus 264 G~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~ 343 (784)
|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+
T Consensus 432 Ga~la~p----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y--------------------------- 478 (572)
T PRK08979 432 GVKFAMP----DETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRFL--------------------------- 478 (572)
T ss_pred hhhhhCC----CCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCcc---------------------------
Confidence 9999864 78999999999998 66678999999999999999888842
Q ss_pred hhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcE
Q 003948 344 TNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPV 422 (784)
Q Consensus 344 ~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~ 422 (784)
+.++..-.... .+. .....+ ..+++.+++++||.+.... .+.++|..+++++.+. .++|+
T Consensus 479 ---~~i~~~q~~~~--~~~----------~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~al~~a~~~-~~~p~ 539 (572)
T PRK08979 479 ---GMVKQWQDMIY--QGR----------HSHSYMDSVPDFAKIAEAYGHVGIRI---SDPDELESGLEKALAM-KDRLV 539 (572)
T ss_pred ---HHHHHHHHHHh--CCc----------ccccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-CCCcE
Confidence 11111100000 000 000001 1256678899999987643 6899999999998752 37899
Q ss_pred EEEEEecC
Q 003948 423 LIHVVTEK 430 (784)
Q Consensus 423 lI~v~T~k 430 (784)
+|+|.+.+
T Consensus 540 lIev~i~~ 547 (572)
T PRK08979 540 FVDINVDE 547 (572)
T ss_pred EEEEEeCC
Confidence 99999874
No 116
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.09 E-value=3.9e-10 Score=133.37 Aligned_cols=138 Identities=21% Similarity=0.254 Sum_probs=93.4
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++||+++|||+++ |...+|.+|.+++.|+++||.||+.+.
T Consensus 416 ~~gsmG~glpaaiGa~lA~p----dr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~yg------------- 476 (588)
T TIGR01504 416 QAGPLGWTIPAALGVCAADP----KRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAYLG------------- 476 (588)
T ss_pred ccccccchHhHHHhhhhhCC----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchH-------------
Confidence 45899999999999999864 88999999999998 556789999999999999998888421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhh-c-CCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQ-I-GGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~-~-g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
.++..-+..... . +....... ..-.+....++..++|+||.++... ++.++|.+
T Consensus 477 -----------------~i~~~q~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~ 532 (588)
T TIGR01504 477 -----------------LIRQAQRAFDMDYCVQLAFENIN----SSEVNGYGVDHVKVAEGLGCKAIRV---FKPEEIAP 532 (588)
T ss_pred -----------------HHHHHHHHhcccccceeeccccc----cccccCCCCCHHHHHHHCCCEEEEE---CCHHHHHH
Confidence 111110000000 0 00000000 0000111356678899999987644 68999999
Q ss_pred HHHHhhcC--CCCCcEEEEEEecCC
Q 003948 409 IFQRVKEM--PAPGPVLIHVVTEKG 431 (784)
Q Consensus 409 al~~ak~~--~~~~P~lI~v~T~kG 431 (784)
+|+++.+. ..++|++|+|.+.+-
T Consensus 533 al~~a~~~~~~~~~p~lIeV~i~~~ 557 (588)
T TIGR01504 533 AFEQAKALMAEHRVPVVVEVILERV 557 (588)
T ss_pred HHHHHHhhcccCCCcEEEEEEeccc
Confidence 99998631 147999999998643
No 117
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.09 E-value=4.8e-10 Score=132.03 Aligned_cols=127 Identities=19% Similarity=0.276 Sum_probs=93.6
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++|+|+|+++|.+ +++|+|++|||+++ +...+|.+|.++++|+++||.||+.+
T Consensus 412 ~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y-------------- 471 (561)
T PRK06048 412 GLGTMGYGFPAAIGAKVGKP----DKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGYL-------------- 471 (561)
T ss_pred CccccccHHHHHHHHHHhCC----CCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCcc--------------
Confidence 55899999999999999864 78999999999998 66678999999999999999888742
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh-hhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
+.+|..-+... + +.+. -++ -..++..++++||.++... ++.++|.+
T Consensus 472 ----------------~~i~~~~~~~~---~----------~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~t~~el~~ 519 (561)
T PRK06048 472 ----------------GMVRQWQELFY---D----------KRYSHTCIKGSVDFVKLAEAYGALGLRV---EKPSEVRP 519 (561)
T ss_pred ----------------HHHHHHHHHHc---C----------CcccccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 11111100000 0 0000 011 1356678899999988643 68999999
Q ss_pred HHHHhhcCCCCCcEEEEEEecCC
Q 003948 409 IFQRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~kG 431 (784)
+|+++.+ .++|++|+|.+.+.
T Consensus 520 al~~a~~--~~~p~liev~~~~~ 540 (561)
T PRK06048 520 AIEEAVA--SDRPVVIDFIVECE 540 (561)
T ss_pred HHHHHHh--CCCCEEEEEEecCc
Confidence 9999986 58999999999753
No 118
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.09 E-value=4.7e-10 Score=132.42 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=93.8
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +....|.+|.++++|+++||.||+.+.
T Consensus 421 ~~gsmG~glpaAiGa~la~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~y~------------- 481 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLAFP----DQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGALG------------- 481 (574)
T ss_pred CcchhhchHHHHHHHHHhCC----CCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCccH-------------
Confidence 56899999999999999875 78999999999999 667889999999999999998887421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh-hhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
.++..-+... .+ .+. ..+ -.+++..++++||.++... .+.++|.+
T Consensus 482 -----------------~i~~~q~~~~--~~-----------~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~ 528 (574)
T PRK06466 482 -----------------MVRQWQDMQY--EG-----------RHSHSYMESLPDFVKLAEAYGHVGIRI---TDLKDLKP 528 (574)
T ss_pred -----------------HHHHHHHHhc--CC-----------ceeecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 1111100000 00 000 011 1246678899999987644 68999999
Q ss_pred HHHHhhcCCCCCcEEEEEEecCC
Q 003948 409 IFQRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~kG 431 (784)
+|+++.+. .++|++|+|.+.+.
T Consensus 529 al~~a~~~-~~~p~lIev~i~~~ 550 (574)
T PRK06466 529 KLEEAFAM-KDRLVFIDIYVDRS 550 (574)
T ss_pred HHHHHHhc-CCCcEEEEEEeCCc
Confidence 99988762 27999999999753
No 119
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.08 E-value=5.2e-10 Score=132.36 Aligned_cols=129 Identities=18% Similarity=0.274 Sum_probs=93.3
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|+|++|||+++ +...+|.+|.++++|+++||.||+.+.
T Consensus 428 ~~g~mG~glpaaiGaala~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y~------------- 488 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAHP----NELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQG------------- 488 (585)
T ss_pred cccchhhhHHHHHHHHHhCC----CCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcch-------------
Confidence 56999999999999999865 78999999999998 667889999999999999999998421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.++..-+... +..... .....-.++...++++||.++.. | ++.++|.+++
T Consensus 489 -----------------~i~~~q~~~~---~~~~~~-------~~~~~~~~d~~~la~a~G~~~~~-v--~~~~el~~al 538 (585)
T CHL00099 489 -----------------MVRQWQQAFY---GERYSH-------SNMEEGAPDFVKLAEAYGIKGLR-I--KSRKDLKSSL 538 (585)
T ss_pred -----------------HHHHHHHHhc---CCCccc-------ccCCCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHHH
Confidence 1111100000 000000 00000124556789999998864 3 6799999999
Q ss_pred HHhhcCCCCCcEEEEEEecC
Q 003948 411 QRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~k 430 (784)
+++.+ .++|.+|+|.+..
T Consensus 539 ~~a~~--~~~p~liev~v~~ 556 (585)
T CHL00099 539 KEALD--YDGPVLIDCQVIE 556 (585)
T ss_pred HHHHh--CCCCEEEEEEECC
Confidence 99986 5799999999974
No 120
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.08 E-value=5.2e-10 Score=131.81 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=92.6
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+.
T Consensus 412 ~~g~mG~~l~~aiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~~~------------- 472 (563)
T PRK08527 412 GLGTMGYGLPAALGAKLAVP----DKVVINFTGDGSIL--MNIQELMTAVEYKIPVINIILNNNFLG------------- 472 (563)
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEecCchhc--ccHHHHHHHHHhCCCeEEEEEECCcch-------------
Confidence 56999999999999999864 78899999999999 455669999999999999998887421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
.+|..-... -+. + ...-++ ..++...++++||..+... ++.++|.++
T Consensus 473 -----------------~i~~~~~~~---~~~-------~--~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 520 (563)
T PRK08527 473 -----------------MVRQWQTFF---YEE-------R--YSETDLSTQPDFVKLAESFGGIGFRV---TTKEEFDKA 520 (563)
T ss_pred -----------------hHHHHHHhh---cCC-------c--eeeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 111100000 000 0 000011 1245567899999987643 689999999
Q ss_pred HHHhhcCCCCCcEEEEEEecCCC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
|+++.+ .++|++|+|.+.+..
T Consensus 521 l~~a~~--~~~p~lieV~v~~~~ 541 (563)
T PRK08527 521 LKEALE--SDKVALIDVKIDRFE 541 (563)
T ss_pred HHHHHh--CCCCEEEEEEECCcc
Confidence 999886 579999999997643
No 121
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.08 E-value=1.9e-09 Score=127.14 Aligned_cols=128 Identities=17% Similarity=0.201 Sum_probs=93.6
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|. +++|||++|||+++ |...+|.+|.++++|+++||.||+.+. .
T Consensus 422 ~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~~-~----------- 482 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGIY-R----------- 482 (569)
T ss_pred CCccccccHHHHHHHHhcC-----CCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhHH-H-----------
Confidence 4699999999999999982 78899999999999 666789999999999999999997310 0
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhcc-CCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI-SASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~-~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
.. +. .....-+...-++. .+++.+++++||+++... ++.++|..+
T Consensus 483 -~~-----------------~~-------------~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 528 (569)
T PRK09259 483 -GD-----------------DV-------------NLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNV---TTPDELRHA 528 (569)
T ss_pred -HH-----------------HH-------------HhhcCCCccccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 00 00 00000000001111 356678899999987643 689999999
Q ss_pred HHHhhcCCCCCcEEEEEEecCCCC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEKGKG 433 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~kG~G 433 (784)
++++.+ .++|++|+|.+.+..+
T Consensus 529 l~~a~~--~~~p~lIev~id~~~~ 550 (569)
T PRK09259 529 LTEAIA--SGKPTLINVVIDPAAG 550 (569)
T ss_pred HHHHHh--CCCCEEEEEEECCCCC
Confidence 999986 5899999999986554
No 122
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.08 E-value=5.9e-10 Score=131.64 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=93.6
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|+++|+|+|+++|.+ +++|||++|||+++ +..++|.+|.++++|+++||.||+.+
T Consensus 419 ~~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~~-------------- 478 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAHP----EATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRFL-------------- 478 (574)
T ss_pred CcccccchhHHHHHHHhhcC----CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECchh--------------
Confidence 56899999999999999864 78999999999998 55688999999999999999999842
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
+.++..-.... .+. .....+ -.++...++++||+.+... ++.++|..+
T Consensus 479 ----------------~~i~~~q~~~~--~~~----------~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~eL~~a 527 (574)
T PRK06882 479 ----------------GMVKQWQDLIY--SGR----------HSQVYMNSLPDFAKLAEAYGHVGIQI---DTPDELEEK 527 (574)
T ss_pred ----------------HHHHHHHHHhc--CCc----------ccccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 11111100000 000 000000 1245567899999988743 689999999
Q ss_pred HHHhhcCCCCCcEEEEEEecCCC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
++++.+. .++|++|+|.+.+..
T Consensus 528 l~~a~~~-~~~p~liev~i~~~~ 549 (574)
T PRK06882 528 LTQAFSI-KDKLVFVDVNVDETE 549 (574)
T ss_pred HHHHHhc-CCCcEEEEEEecCcc
Confidence 9998763 378999999997543
No 123
>PRK08617 acetolactate synthase; Reviewed
Probab=99.07 E-value=4.9e-10 Score=131.73 Aligned_cols=128 Identities=16% Similarity=0.245 Sum_probs=93.5
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|.++|+|+|+++|.. +++|+|++|||+++ |...+|.+|.++++|+++||.||+.+.+
T Consensus 412 ~~g~mG~~lpaaiGa~la~p----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~~~------------ 473 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVRP----GKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGHYNM------------ 473 (552)
T ss_pred ccccccccccHHHhhHhhcC----CCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCccch------------
Confidence 56889999999999998864 78999999999999 6667899999999999988888874211
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
++.. +.... .+....++-..++..++++||.++... ++.++|.++|
T Consensus 474 ------------------~~~~------------~~~~~-~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al 519 (552)
T PRK08617 474 ------------------VEFQ------------EEMKY-GRSSGVDFGPVDFVKYAESFGAKGLRV---TSPDELEPVL 519 (552)
T ss_pred ------------------HHHH------------HHhhc-CCcccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 1100 00000 000000111346677899999988644 7899999999
Q ss_pred HHhhcCCCCCcEEEEEEecCCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+++.+ .++|++|+|.+.+..
T Consensus 520 ~~a~~--~~~p~liev~~~~~~ 539 (552)
T PRK08617 520 REALA--TDGPVVIDIPVDYSD 539 (552)
T ss_pred HHHHh--CCCcEEEEEEecccc
Confidence 99876 578999999997544
No 124
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.07 E-value=7.2e-10 Score=130.80 Aligned_cols=128 Identities=18% Similarity=0.286 Sum_probs=93.1
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.+++.|+++||.||+.+
T Consensus 422 ~~g~mG~glpaAiGaala~p----~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~~-------------- 481 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLAKP----DETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEAL-------------- 481 (571)
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECchH--------------
Confidence 55899999999999999864 78999999999999 55567999999999999999888742
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh-hhcc-CCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGLI-SASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-r~~~-~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
+.+|..-.... + +.+. .++. ..+...++++||+++... ++.++|.+
T Consensus 482 ----------------~~i~~~~~~~~---~----------~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~ 529 (571)
T PRK07710 482 ----------------GMVRQWQEEFY---N----------QRYSHSLLSCQPDFVKLAEAYGIKGVRI---DDELEAKE 529 (571)
T ss_pred ----------------HHHHHHHHHHh---C----------CcceeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 12221100000 0 0000 0111 245667899999998744 67999999
Q ss_pred HHHHhhcCCCCCcEEEEEEecCCC
Q 003948 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+++++.+ .++|++|+|.+....
T Consensus 530 al~~a~~--~~~p~lieV~vd~~~ 551 (571)
T PRK07710 530 QLQHAIE--LQEPVVIDCRVLQSE 551 (571)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999986 579999999997543
No 125
>PRK12474 hypothetical protein; Provisional
Probab=99.06 E-value=5.8e-10 Score=130.10 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=90.6
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 003948 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~ 332 (784)
|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+.
T Consensus 389 gsmG~glpaAiGa~lA~p----~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y~--------------- 447 (518)
T PRK12474 389 GSIGQGLPLAAGAAVAAP----DRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSYA--------------- 447 (518)
T ss_pred CccCccHHHHHHHHHHCC----CCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcch---------------
Confidence 999999999999999974 88999999999999 667889999999999999998997421
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhcc--CCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI--SASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 333 l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~--~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.+|..-+.. +.... .+.....-+.. ..++..++++||++... | .+.++|.+++
T Consensus 448 ---------------~i~~~~~~~----~~~~~---~~~~~~~~~~~~~~~d~~~lA~a~G~~~~r-v--~~~~eL~~al 502 (518)
T PRK12474 448 ---------------ILNGELQRV----GAQGA---GRNALSMLDLHNPELNWMKIAEGLGVEASR-A--TTAEEFSAQY 502 (518)
T ss_pred ---------------HHHHHHHhh----cCCCC---CccccccccCCCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHHH
Confidence 111110000 00000 00000000111 13667889999998764 4 5799999999
Q ss_pred HHhhcCCCCCcEEEEEEe
Q 003948 411 QRVKEMPAPGPVLIHVVT 428 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T 428 (784)
+++.+ .++|++|+|.+
T Consensus 503 ~~a~~--~~~p~liev~~ 518 (518)
T PRK12474 503 AAAMA--QRGPRLIEAMI 518 (518)
T ss_pred HHHHc--CCCCEEEEEEC
Confidence 99986 58999999964
No 126
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.06 E-value=7.4e-10 Score=130.90 Aligned_cols=131 Identities=17% Similarity=0.208 Sum_probs=95.0
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+.
T Consensus 428 ~~g~mG~~lpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~yg------------- 488 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIAAP----DRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQWG------------- 488 (579)
T ss_pred ccccccchHHHHHhhhhhCC----CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcchH-------------
Confidence 56899999999999999864 78999999999999 556789999999999999998888521
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh-hhccC-CCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGLIS-ASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-r~~~~-~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
.++..-+... + +.+. .++-. .++.+++++||.++... ++.++|..
T Consensus 489 -----------------~i~~~~~~~~---~----------~~~~~~~~~~~~d~~~lA~a~G~~g~~v---~~~~el~~ 535 (579)
T TIGR03457 489 -----------------AEKKNQVDFY---N----------NRFVGTELESELSFAGIADAMGAKGVVV---DKPEDVGP 535 (579)
T ss_pred -----------------HHHHHHHHhh---C----------CcceeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 1111100000 0 0000 01112 36678899999988643 78999999
Q ss_pred HHHHhhcC-CCCCcEEEEEEecCCCC
Q 003948 409 IFQRVKEM-PAPGPVLIHVVTEKGKG 433 (784)
Q Consensus 409 al~~ak~~-~~~~P~lI~v~T~kG~G 433 (784)
+++++.+. ..++|++|+|.+.+-.+
T Consensus 536 al~~a~~~~~~~~p~lieV~v~~~~~ 561 (579)
T TIGR03457 536 ALKKAIAAQAEGKTTVIEIVCTRELG 561 (579)
T ss_pred HHHHHHhhCCCCCcEEEEEEeCCCcC
Confidence 99988642 24789999999987664
No 127
>PRK06154 hypothetical protein; Provisional
Probab=99.06 E-value=3.6e-10 Score=133.11 Aligned_cols=129 Identities=21% Similarity=0.204 Sum_probs=93.8
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++++|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+..-...
T Consensus 429 ~~gsmG~glpaaiGa~la~p----~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~-------- 494 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLARP----DALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSMGGYDKV-------- 494 (565)
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCccceeehh--------
Confidence 46899999999999999864 88999999999998 66788999999999999999888843210000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
+..... .....+ ..+++..++++||.++.. | .+.++|.++|
T Consensus 495 ----------------------------------~~~~~~-~~~~~~-~~~df~~lA~a~G~~g~~-V--~~~~el~~al 535 (565)
T PRK06154 495 ----------------------------------MPVSTT-KYRATD-ISGDYAAIARALGGYGER-V--EDPEMLVPAL 535 (565)
T ss_pred ----------------------------------hhhhcC-cccccC-CCCCHHHHHHHCCCeEEE-E--CCHHHHHHHH
Confidence 000000 000001 134667789999998864 4 5899999999
Q ss_pred HHhhcC-CCCCcEEEEEEecCCC
Q 003948 411 QRVKEM-PAPGPVLIHVVTEKGK 432 (784)
Q Consensus 411 ~~ak~~-~~~~P~lI~v~T~kG~ 432 (784)
+++.+. ..++|++|+|.+.+..
T Consensus 536 ~~a~~~~~~~~p~lIev~v~~~~ 558 (565)
T PRK06154 536 LRALRKVKEGTPALLEVITSEET 558 (565)
T ss_pred HHHHhhccCCCeEEEEEEeChHH
Confidence 998742 1478999999986544
No 128
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.06 E-value=7.4e-10 Score=129.56 Aligned_cols=124 Identities=25% Similarity=0.313 Sum_probs=89.1
Q ss_pred CcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 003948 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVG 331 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~ 331 (784)
.|++|++++.|+|+++|.+ +++|+|++|||+++++ .++|++|.++++|+++||.||+.+.+
T Consensus 406 ~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~------------- 466 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQP----GRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGA------------- 466 (530)
T ss_pred CCcccchHHHHHHHHHhCC----CCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHH-------------
Confidence 4889999999999999864 7899999999999965 58899999999999988888873211
Q ss_pred hhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHH
Q 003948 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ 411 (784)
Q Consensus 332 ~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~ 411 (784)
++...+ ..+.. + ....++-..+...++++||+.+. .| ++.+++.++++
T Consensus 467 -----------------~~~~~~----~~~~~------~--~~~~~~~~~d~~~~a~~~G~~~~-~v--~~~~~l~~al~ 514 (530)
T PRK07092 467 -----------------LRWFAP----VFGVR------D--VPGLDLPGLDFVALARGYGCEAV-RV--SDAAELADALA 514 (530)
T ss_pred -----------------HHHHHH----hhCCC------C--CCCCCCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHH
Confidence 110000 00000 0 00000112345677999999876 44 47899999999
Q ss_pred HhhcCCCCCcEEEEEEe
Q 003948 412 RVKEMPAPGPVLIHVVT 428 (784)
Q Consensus 412 ~ak~~~~~~P~lI~v~T 428 (784)
++.+ .++|++|++.|
T Consensus 515 ~a~~--~~~p~liev~~ 529 (530)
T PRK07092 515 RALA--ADGPVLVEVEV 529 (530)
T ss_pred HHHh--CCCCEEEEEEc
Confidence 9886 58999999987
No 129
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.06 E-value=5.7e-10 Score=132.68 Aligned_cols=127 Identities=20% Similarity=0.322 Sum_probs=93.6
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|++++.|+|+++|.+ +++|+|++|||+++ +...+|.+|.++++|+++||.||+.+
T Consensus 445 ~~G~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~~-------------- 504 (612)
T PRK07789 445 GLGTMGYAVPAAMGAKVGRP----DKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGNL-------------- 504 (612)
T ss_pred CcccccchhhhHHhhhccCC----CCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCch--------------
Confidence 56899999999999999864 78999999999998 66788999999999999999888842
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh-hhc-----cCCCchhhhhhcCCeEEeecCCCCHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-----ISASGSTFFEELGLYYIGPVDGHNVE 404 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-r~~-----~~~~~~~lfea~G~~~i~~vDGhd~~ 404 (784)
+.++..- ..... ..+. .++ -.+++.+++++||+.+... ++.+
T Consensus 505 ----------------g~i~~~q------------~~~~~-~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~ 552 (612)
T PRK07789 505 ----------------GMVRQWQ------------TLFYE-ERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRC---EREE 552 (612)
T ss_pred ----------------HHHHHHH------------HHhhC-CCcceeecCcCCCCCCCHHHHHHHCCCeEEEE---CCHH
Confidence 1111110 00000 0000 000 1146678899999988744 7899
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEecC
Q 003948 405 DLVTIFQRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 405 ~l~~al~~ak~~~~~~P~lI~v~T~k 430 (784)
+|.++|+++.+. .++|++|+|.+.+
T Consensus 553 eL~~al~~a~~~-~~~p~lIev~i~~ 577 (612)
T PRK07789 553 DVDAVIEKARAI-NDRPVVIDFVVGK 577 (612)
T ss_pred HHHHHHHHHHhc-CCCcEEEEEEECC
Confidence 999999998863 3799999999975
No 130
>PRK07586 hypothetical protein; Validated
Probab=99.06 E-value=6.8e-10 Score=129.38 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=90.1
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 003948 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~ 332 (784)
|++|+++|+|+|+++|++ +++|+|++|||+++ +...+|.+|.++++|+++||.||+.+
T Consensus 385 g~mG~~lpaaiGa~lA~p----~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~y---------------- 442 (514)
T PRK07586 385 GAIGQGLPLATGAAVACP----DRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRAY---------------- 442 (514)
T ss_pred cccccHHHHHHHHHHhCC----CCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCchh----------------
Confidence 889999999999999974 88999999999998 66788999999999998888888742
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhh-hhcCCchHHHHHHHHHHhhhcc--CCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 333 LSSALSKLQASTNFRKLREAAKSIT-KQIGGQTHEVAAKVDEYARGLI--SASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 333 l~~~L~~~~~~~~~~~lr~~~~~~~-~~~g~~~~~~~~k~~~~~r~~~--~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
+.+|..-+... +..+.. ...+. +.. ..++..++++||+++.. | ++.++|.++
T Consensus 443 --------------~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~d~~~lA~a~G~~~~~-V--~~~~el~~a 497 (514)
T PRK07586 443 --------------AILRGELARVGAGNPGPR-------ALDML-DLDDPDLDWVALAEGMGVPARR-V--TTAEEFADA 497 (514)
T ss_pred --------------HHHHHHHHHhcCCCCCcc-------ccccc-cCCCCCCCHHHHHHHCCCcEEE-e--CCHHHHHHH
Confidence 11221100000 000000 00000 111 24667889999998764 4 689999999
Q ss_pred HHHhhcCCCCCcEEEEEEe
Q 003948 410 FQRVKEMPAPGPVLIHVVT 428 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T 428 (784)
++++.+ .++|++|+|.+
T Consensus 498 l~~a~~--~~~p~liev~~ 514 (514)
T PRK07586 498 LAAALA--EPGPHLIEAVV 514 (514)
T ss_pred HHHHHc--CCCCEEEEEEC
Confidence 999986 57999999863
No 131
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.06 E-value=7.2e-10 Score=131.44 Aligned_cols=131 Identities=22% Similarity=0.321 Sum_probs=92.9
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhh-HHHHHHHhhc-----CCCEEEEEECCCCCCcCccCCC
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQA-YEAMNNAGFL-----DANLIVVLNDNKQVSLPTATLD 324 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~-~EAln~A~~~-----~~nlivIv~dN~~~s~~t~~~d 324 (784)
+.|++|.++|+|+|+++|.+ +++|+|++|||+++ |. ..+|.+|.++ ++|+++||.||+.+.
T Consensus 413 ~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~------- 479 (597)
T PRK08273 413 TLATMGPAVPYAIAAKFAHP----DRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRDLN------- 479 (597)
T ss_pred ccccccchHHHHHHHHHhCC----CCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCcch-------
Confidence 45899999999999999864 88999999999997 55 4679999988 899999998887421
Q ss_pred CCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHH
Q 003948 325 GPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVE 404 (784)
Q Consensus 325 g~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~ 404 (784)
.++..-... .+.... ....++-..++..++++||+.+... .+.+
T Consensus 480 -----------------------~i~~~q~~~---~~~~~~-------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~ 523 (597)
T PRK08273 480 -----------------------QVTWEQRVM---EGDPKF-------EASQDLPDVPYARFAELLGLKGIRV---DDPE 523 (597)
T ss_pred -----------------------HHHHHHHHh---cCCCcc-------cccccCCCCCHHHHHHHCCCEEEEE---CCHH
Confidence 111110000 000000 0000111245667899999988744 6899
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEecCCC
Q 003948 405 DLVTIFQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 405 ~l~~al~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+|..+++++.+ .++|++|+|.+.+..
T Consensus 524 eL~~al~~a~~--~~~p~lIeV~~~~~~ 549 (597)
T PRK08273 524 QLGAAWDEALA--ADRPVVLEVKTDPNV 549 (597)
T ss_pred HHHHHHHHHHh--CCCCEEEEEEeCCCC
Confidence 99999999986 589999999997543
No 132
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.05 E-value=7.6e-10 Score=130.71 Aligned_cols=129 Identities=15% Similarity=0.210 Sum_probs=92.5
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++++|+|+++|.+ +++||+++|||+++ +...+|.+|.++++|+++||.||+.+.
T Consensus 406 ~~gsmG~glpaAiGa~la~p----~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~yg------------- 466 (575)
T TIGR02720 406 LFATMGVGVPGAIAAKLNYP----DRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCTYG------------- 466 (575)
T ss_pred CcchhhchHHHHHHHHHhCC----CCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCccH-------------
Confidence 46999999999999998864 78999999999999 566789999999999999888887421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.++..-+.. +. .....++-.+++..++++||..+. .| ++.++|.+++
T Consensus 467 -----------------~i~~~~~~~----~~---------~~~~~~~~~~df~~iA~a~G~~~~-~v--~~~~el~~al 513 (575)
T TIGR02720 467 -----------------FIKDEQEDT----NQ---------PLIGVDFNDADFAKIAEGVGAVGF-RV--NKIEQLPAVF 513 (575)
T ss_pred -----------------HHHHHHHHh----CC---------CcccccCCCCCHHHHHHHCCCEEE-Ee--CCHHHHHHHH
Confidence 111100000 00 000011223566788999999876 34 6889999999
Q ss_pred HHhhcCCCCCcEEEEEEecCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG 431 (784)
+++.+...++|++|+|.+.+-
T Consensus 514 ~~a~~~~~~~p~liev~i~~~ 534 (575)
T TIGR02720 514 EQAKAIKQGKPVLIDAKITGD 534 (575)
T ss_pred HHHHhhCCCCcEEEEEEeCCC
Confidence 998721157999999999753
No 133
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.05 E-value=6.3e-10 Score=131.12 Aligned_cols=128 Identities=22% Similarity=0.318 Sum_probs=91.5
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++++|+|+++|.+ +++|+|++|||+++. ...+|.+|.++++|+++||.||+.+.+
T Consensus 417 ~~g~mG~~lpaaiGa~la~~----~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpvi~vV~NN~~~g~------------ 478 (564)
T PRK08155 417 GLGTMGFGLPAAIGAALANP----ERKVLCFSGDGSLMM--NIQEMATAAENQLDVKIILMNNEALGL------------ 478 (564)
T ss_pred CcccccchhHHHHHHHHhCC----CCcEEEEEccchhhc--cHHHHHHHHHhCCCeEEEEEeCCcccc------------
Confidence 56899999999999999864 789999999999995 456699999999999999988874211
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
++.. +......+.+..++ -..+...++++||++++.. .+.++|.++
T Consensus 479 ------------------~~~~------------q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 525 (564)
T PRK08155 479 ------------------VHQQ------------QSLFYGQRVFAATYPGKINFMQIAAGFGLETCDL---NNEADPQAA 525 (564)
T ss_pred ------------------cHHH------------HHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 0000 00000000000011 1245567899999988643 579999999
Q ss_pred HHHhhcCCCCCcEEEEEEecCC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~kG 431 (784)
++++.+ .++|++|+|.+...
T Consensus 526 l~~a~~--~~~p~lIeV~~~~~ 545 (564)
T PRK08155 526 LQEAIN--RPGPALIHVRIDAE 545 (564)
T ss_pred HHHHHh--CCCCEEEEEEeCCC
Confidence 999986 57999999999643
No 134
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.04 E-value=7.4e-10 Score=131.21 Aligned_cols=140 Identities=21% Similarity=0.259 Sum_probs=93.4
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+.
T Consensus 417 ~~G~mG~glpaAiGa~la~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g------------- 477 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAADP----DRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAYLG------------- 477 (591)
T ss_pred ccccccchhhhHHhhhhhCC----CCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCchh-------------
Confidence 46999999999999999864 78999999999998 566789999999999999998888421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.++..-........... .+. .+...-.+.-..++..++++||.++... ++.++|..++
T Consensus 478 -----------------~i~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al 535 (591)
T PRK11269 478 -----------------LIRQAQRAFDMDYCVQL-AFE-NINSPELNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPAL 535 (591)
T ss_pred -----------------HHHHHHHHhccCcccee-ecc-ccccccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 11110000000000000 000 0000000001246678899999988644 7999999999
Q ss_pred HHhhcC--CCCCcEEEEEEecCC
Q 003948 411 QRVKEM--PAPGPVLIHVVTEKG 431 (784)
Q Consensus 411 ~~ak~~--~~~~P~lI~v~T~kG 431 (784)
+++.+. ..++|++|+|.+.+.
T Consensus 536 ~~a~~~~~~~~gp~lieV~v~~~ 558 (591)
T PRK11269 536 EQAKALMAEFRVPVVVEVILERV 558 (591)
T ss_pred HHHHhhcccCCCcEEEEEEeccc
Confidence 998631 147899999999643
No 135
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.04 E-value=2.7e-08 Score=123.22 Aligned_cols=298 Identities=19% Similarity=0.159 Sum_probs=185.8
Q ss_pred hhHHHHHHHHHHHHHhhCCC--E--EEEecCCCCCC--Ch-hhhHHhC-----CCCeeeccccHHHHHHHHHHHH-----
Q 003948 465 LTYTQYFAESLIKEAETDDK--I--VAIHAAMGGGT--GL-NYFQKRF-----PDRCFDVGIAEQHAVTFAAGLA----- 527 (784)
Q Consensus 465 ~s~~~af~~aL~~l~~~d~~--i--v~i~aD~ggs~--gl-~~f~~~~-----p~R~~d~GIaE~~~vg~AaGlA----- 527 (784)
++=.+|+.+.+.+-.+.|.. + ..+-....|+. ++ ..|.+.- -+-+|+.|++|.-+..++.|.+
T Consensus 20 l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~~~ 99 (1159)
T PRK13030 20 LTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVEAD 99 (1159)
T ss_pred eeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhcccccc
Confidence 45678888888776666642 2 12222344443 33 2333221 1379999999999999999999
Q ss_pred ----hcCCeeEEEecHhHHHHHHHHHHHHhhcCCC----C-EEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecC
Q 003948 528 ----SEGVKPFCAIYSSFLQRGYDQVVHDVDLQKL----P-VRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPS 598 (784)
Q Consensus 528 ----~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~l----p-V~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Ps 598 (784)
+.|.+.+++.-.+.+.++.|.+++ +++... - |++++|..|... -.+-|+.+....+..|| |+.|+
T Consensus 100 ~~~~~~Gv~~l~~~K~~GvnvaaD~l~~-~n~~G~~~~GG~v~v~gDDpg~~S--Sq~eqdSr~~~~~a~iP---vl~Ps 173 (1159)
T PRK13030 100 PERTVDGVFAMWYGKGPGVDRAGDALKH-GNAYGSSPHGGVLVVAGDDHGCVS--SSMPHQSDFALIAWHMP---VLNPA 173 (1159)
T ss_pred CCccccceEEEEecCcCCcccchhHHHH-HHhhcCCCCCcEEEEEecCCCCcc--CcCHHHHHHHHHHcCCc---eeCCC
Confidence 667777888888899999999864 455443 2 455556555321 23344444444445555 99999
Q ss_pred CHHHHHHHHHHHHH---hCCCCeEEEcCCCC------Cc--c----ccCCCCCCC------CCccc--------------
Q 003948 599 DEAELMHMVATAAV---IDDRPSCFRFPRGN------GI--G----AVLPPNNKG------TPLEI-------------- 643 (784)
Q Consensus 599 d~~E~~~~l~~A~~---~~~~Pv~irl~r~~------~~--~----~~~p~~~~~------~~~~i-------------- 643 (784)
|++|+..+.+.+++ ..+-||.+|..... +. . ...|..... ..++.
T Consensus 174 ~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl 253 (1159)
T PRK13030 174 NVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEARLAAKL 253 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHHHHHHH
Confidence 99999999999988 34559998864221 00 0 001110000 00000
Q ss_pred ------cc---e-eEe--eeCCcEEEEEechhHHHHHHHHHHHhcCC-----CcEEEeeccccCCCcHHHHHHHhccCCe
Q 003948 644 ------GK---G-RIL--MEGDRVAILGYGSIVQQCVLAANMLKSQD-----ISVTVADARFCKPLDTDLIRQLANEHEI 706 (784)
Q Consensus 644 ------gk---~-~vl--reG~dvtIva~Gs~v~~aleAae~L~~~G-----I~v~VId~~slkPlD~e~i~~~~~~~~~ 706 (784)
.+ . ++. .++.++.||++|.....++||.+.|...+ +.++|+.+-..+||+.+.+++.++.++.
T Consensus 254 ~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i~~F~~g~d~ 333 (1159)
T PRK13030 254 PAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRLREFADGLEE 333 (1159)
T ss_pred HHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHHHHHHhcCCE
Confidence 00 0 111 12357999999999999999999885433 2467777878899999999999999999
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHH-cCCCHHHHHHHHHHHhcC
Q 003948 707 LITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEE-SGLSSRHISATVLSLLGR 777 (784)
Q Consensus 707 vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~-~gl~~~~I~~~i~~ll~~ 777 (784)
|+||||... =+..++.+.+..... ..+...+|..|.- |. .++.. -.|+++.|...+.+.++.
T Consensus 334 VlVVEE~~p-~iE~Qlk~~l~~~~~---~~~~~v~GK~~~~---G~--pllp~~gEl~~~~v~~~l~~~l~~ 396 (1159)
T PRK13030 334 ILVIEEKRP-VIEQQIKDYLYNRPG---GARPRVVGKHDED---GA--PLLSELGELRPSLIAPVLAARLAR 396 (1159)
T ss_pred EEEEeCCch-HHHHHHHHHHHhccc---cCCceeEEEECCC---CC--cCCCCcCCcCHHHHHHHHHHHHhc
Confidence 999999863 345556666654321 1123334443211 10 01112 237999999998777653
No 136
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.04 E-value=7.3e-10 Score=130.59 Aligned_cols=126 Identities=20% Similarity=0.279 Sum_probs=90.9
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.+++.|+++||.||+.+.
T Consensus 416 ~~g~mG~glpaaiGa~lA~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~------------- 476 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIANP----DKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHSLG------------- 476 (566)
T ss_pred ccccccchhhHhheeheecC----CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCCch-------------
Confidence 56999999999999999864 78999999999998 667889999999999999998887421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
.+|..-+... +. +.....+ -.+++..++++||.++... .+.++|.++
T Consensus 477 -----------------~i~~~q~~~~---~~---------~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 524 (566)
T PRK07282 477 -----------------MVRQWQESFY---EG---------RTSESVFDTLPDFQLMAQAYGIKHYKF---DNPETLAQD 524 (566)
T ss_pred -----------------HHHHHHHHHh---CC---------CcccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHH
Confidence 1111100000 00 0000011 1256678899999988644 689999999
Q ss_pred HHHhhcCCCCCcEEEEEEecC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~k 430 (784)
++.+ . .++|++|+|.+.+
T Consensus 525 l~~~-~--~~~p~lIeV~v~~ 542 (566)
T PRK07282 525 LEVI-T--EDVPMLIEVDISR 542 (566)
T ss_pred HHHh-c--CCCCEEEEEEeCC
Confidence 9754 3 4899999999975
No 137
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.04 E-value=6.3e-10 Score=130.39 Aligned_cols=123 Identities=21% Similarity=0.250 Sum_probs=90.1
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|+|++|||+++ |...+|.+|.+++.|+++||.||+.+.+-...+... .
T Consensus 402 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~-~-- 472 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTACP----NRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAE-Q-- 472 (539)
T ss_pred hhhhhhhHHHHHHHHHhcCC----CCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCC-C--
Confidence 56899999999999999864 88999999999998 777889999999999888888887432100000000 0
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCe----EEeecCCCCHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY----YIGPVDGHNVEDL 406 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~----~i~~vDGhd~~~l 406 (784)
.+ .++-.+++..+.++||.. +. .| ++.++|
T Consensus 473 ------------------------------------------~~-~~~~~~df~~la~a~G~~~~~~~~-~v--~~~~el 506 (539)
T TIGR03393 473 ------------------------------------------RY-NDIALWNWTHLPQALSLDPQSECW-RV--SEAEQL 506 (539)
T ss_pred ------------------------------------------Cc-CcCCCCCHHHHHHHcCCCCccceE-Ee--ccHHHH
Confidence 00 011123455678999974 44 33 689999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEecC
Q 003948 407 VTIFQRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 407 ~~al~~ak~~~~~~P~lI~v~T~k 430 (784)
.++++++.+ .++|++|+|.+.+
T Consensus 507 ~~al~~a~~--~~~p~liev~i~~ 528 (539)
T TIGR03393 507 ADVLEKVAA--HERLSLIEVVLPK 528 (539)
T ss_pred HHHHHHHhc--cCCeEEEEEEcCc
Confidence 999999987 5899999999853
No 138
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.04 E-value=5e-09 Score=123.31 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=91.9
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|. +++||+++|||+++ |...+|.+|.++++|+++||.||+.+.. +...
T Consensus 415 ~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~~------~~~~-- 479 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIYR------GDDV-- 479 (554)
T ss_pred CCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhhh------hhhh--
Confidence 4589999999999999972 68899999999999 6667799999999999999988874210 0000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
. . .+. +....++ -.+++..++++||.++... .+.++|.++
T Consensus 480 -------------------~-----~---~~~---------~~~~~~~~~~~df~~la~a~G~~~~~v---~~~~el~~a 520 (554)
T TIGR03254 480 -------------------N-----V---VGA---------DPAPTVLVHGARYDKMMKAFGGVGYNV---TTPDELKAA 520 (554)
T ss_pred -------------------h-----h---cCC---------CCCccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 0 0 000 0000111 1245667899999987644 689999999
Q ss_pred HHHhhcCCCCCcEEEEEEecCCC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
++++.+ .++|++|+|.+.+..
T Consensus 521 l~~a~~--~~~p~lIev~id~~~ 541 (554)
T TIGR03254 521 LNEALA--SGKPTLINAVIDPSA 541 (554)
T ss_pred HHHHHh--CCCCEEEEEEECCCc
Confidence 999876 579999999997553
No 139
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.03 E-value=8.8e-10 Score=129.70 Aligned_cols=128 Identities=21% Similarity=0.351 Sum_probs=92.5
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|+|++|||+++. ...+|.+|.++++|+++||.||+...
T Consensus 410 ~~g~mG~~l~aaiGa~la~~----~~~vv~~~GDG~f~~--~~~eL~ta~~~~l~~~~vv~NN~~~~------------- 470 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAKP----ESTVICITGDGSFQM--NLQELSTAVQYDIPVKILILNNRYLG------------- 470 (558)
T ss_pred ccccccchhhHHHhhhhhCC----CCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEeCCchH-------------
Confidence 55899999999999998864 789999999999995 44579999999999999999998521
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh-hhcc-CCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGLI-SASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-r~~~-~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
.++..-+.. .+ +.+. ..+. .++...++++||++++. + ++.++|.+
T Consensus 471 -----------------~~~~~q~~~---~~----------~~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~~l~~ 517 (558)
T TIGR00118 471 -----------------MVRQWQELF---YE----------ERYSHTHMGSLPDFVKLAEAYGIKGIR-I--EKPEELDE 517 (558)
T ss_pred -----------------HHHHHHHHh---cC----------CceeeccCCCCCCHHHHHHHCCCeEEE-E--CCHHHHHH
Confidence 111000000 00 0000 0111 24566789999998864 3 56899999
Q ss_pred HHHHhhcCCCCCcEEEEEEecCCC
Q 003948 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
+++++.+ .++|++|||.+.+..
T Consensus 518 al~~a~~--~~~p~liev~~~~~~ 539 (558)
T TIGR00118 518 KLKEALS--SNEPVLLDVVVDKPE 539 (558)
T ss_pred HHHHHHh--CCCCEEEEEEeCCcc
Confidence 9999886 489999999997543
No 140
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.01 E-value=1.3e-09 Score=129.00 Aligned_cols=126 Identities=16% Similarity=0.279 Sum_probs=92.0
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||-||+.+.
T Consensus 417 ~~gsmG~~lpaaiGa~la~p----~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g------------- 477 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAKP----DANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRTLG------------- 477 (586)
T ss_pred CccccccchhHHHhhhhhcC----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchH-------------
Confidence 45899999999999999864 78899999999999 556779999999999999998887421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh-hhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
.++.. +..... ..+. -++ -..+..+++++||.++... ++.++|.+
T Consensus 478 -----------------~~~~~------------~~~~~~-~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~ 524 (586)
T PRK06276 478 -----------------MVYQW------------QNLYYG-KRQSEVHLGETPDFVKLAESYGVKADRV---EKPDEIKE 524 (586)
T ss_pred -----------------HHHHH------------HHHHhC-CCcccccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 11100 000000 0000 011 1245677899999987644 78999999
Q ss_pred HHHHhhcCCCCCcEEEEEEecC
Q 003948 409 IFQRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~k 430 (784)
+++++.+ .++|++|+|.+.+
T Consensus 525 al~~a~~--~~~p~lIeV~i~~ 544 (586)
T PRK06276 525 ALKEAIK--SGEPYLLDIIIDP 544 (586)
T ss_pred HHHHHHh--CCCCEEEEEEecc
Confidence 9999876 5799999999964
No 141
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.99 E-value=1.1e-09 Score=129.15 Aligned_cols=136 Identities=21% Similarity=0.252 Sum_probs=90.8
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++|+|+|+++|. ++++|||++|||+++.+..-+++++|.++++|+++||.||+.+.+
T Consensus 428 ~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~------------ 491 (569)
T PRK08327 428 SAGGLGWALGAALGAKLAT----PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLA------------ 491 (569)
T ss_pred CCCCCCcchHHHHHHhhcC----CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCccccc------------
Confidence 5689999999999999875 489999999999999875445799999999999999999974221
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHH-hhhc-cCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEY-ARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~-~r~~-~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
++..-+.+.. .+... ..+.+ ..++ -..+...++++||+.+. .| ++.++|..
T Consensus 492 ------------------~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~d~~~la~a~G~~~~-~v--~~~~el~~ 544 (569)
T PRK08327 492 ------------------VKEAVLEVYP-EGYAA-----RKGTFPGTDFDPRPDFAKIAEAFGGYGE-RV--EDPEELKG 544 (569)
T ss_pred ------------------chhHHhhhCc-ccccc-----cccccccccCCCCCCHHHHHHhCCCCce-Ee--CCHHHHHH
Confidence 0000000000 00000 00000 0001 12455678999999876 34 58999999
Q ss_pred HHHHhhcC--CCCCcEEEEEEec
Q 003948 409 IFQRVKEM--PAPGPVLIHVVTE 429 (784)
Q Consensus 409 al~~ak~~--~~~~P~lI~v~T~ 429 (784)
+++++.+. +.++|++|+|.+.
T Consensus 545 al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 545 ALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred HHHHHHHHHhcCCCcEEEEEEcc
Confidence 99887652 1268999999874
No 142
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.97 E-value=3.4e-09 Score=125.56 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=92.8
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|.++|+|+|+++|.+ +++|||++|||+++.+ ..++.+|.+++.|+++||-||+.+.
T Consensus 433 ~~g~mG~glp~aiGa~la~p----~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y~------------- 493 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIACP----DRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQWG------------- 493 (588)
T ss_pred cccccccHHHHHHHHHHhCC----CCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchhH-------------
Confidence 56899999999999999864 7899999999999954 5669999999999999998887421
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh-hhcc-CCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGLI-SASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-r~~~-~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
.++..-.... + +.+. .++- ..+...++++||.+++. | ++.++|.+
T Consensus 494 -----------------~~~~~~~~~~---~----------~~~~~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~el~~ 540 (588)
T PRK07525 494 -----------------AEKKNQVDFY---N----------NRFVGTELDNNVSYAGIAEAMGAEGVV-V--DTQEELGP 540 (588)
T ss_pred -----------------HHHHHHHHHh---C----------CCcccccCCCCCCHHHHHHHCCCeEEE-E--CCHHHHHH
Confidence 1111000000 0 0000 0111 14567789999998874 4 58999999
Q ss_pred HHHHhhcCC-CCCcEEEEEEecCCCC
Q 003948 409 IFQRVKEMP-APGPVLIHVVTEKGKG 433 (784)
Q Consensus 409 al~~ak~~~-~~~P~lI~v~T~kG~G 433 (784)
+++++.+.. .++|++|+|.+.+..|
T Consensus 541 al~~a~~~~~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 541 ALKRAIDAQNEGKTTVIEIMCNQELG 566 (588)
T ss_pred HHHHHHhcCCCCCcEEEEEEeccccC
Confidence 999887531 3689999999976554
No 143
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=98.96 E-value=5.5e-08 Score=120.23 Aligned_cols=292 Identities=18% Similarity=0.161 Sum_probs=185.3
Q ss_pred hhHHHHHHHHHHHHHhhCC--CE--EEEecCCCCCC--Chh-hhHHhC-----CCCeeeccccHHHHHHHH---------
Q 003948 465 LTYTQYFAESLIKEAETDD--KI--VAIHAAMGGGT--GLN-YFQKRF-----PDRCFDVGIAEQHAVTFA--------- 523 (784)
Q Consensus 465 ~s~~~af~~aL~~l~~~d~--~i--v~i~aD~ggs~--gl~-~f~~~~-----p~R~~d~GIaE~~~vg~A--------- 523 (784)
++=.+|+.+.+.+..++|. .+ ..+-....|+. +++ .|.+.- -+-+|..|++|.-+++++
T Consensus 28 l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~~ 107 (1165)
T PRK09193 28 LTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNLF 107 (1165)
T ss_pred eeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhcccccc
Confidence 4557888888777656553 22 12222344443 232 232211 237899999999999999
Q ss_pred HHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCC----C-EEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecC
Q 003948 524 AGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKL----P-VRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPS 598 (784)
Q Consensus 524 aGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~l----p-V~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Ps 598 (784)
.|.++.|.+.+++.-.+.+.++.|.+++ +++... - |++++|..|... -.+-|+.+....+..|| |+.|+
T Consensus 108 ~~a~~~Gv~~l~y~K~pGvn~aaD~l~~-~n~~G~~~~GGvv~v~gDDpg~~S--Sq~eqdSr~~~~~a~iP---vl~Ps 181 (1165)
T PRK09193 108 PGAKYDGVFGMWYGKGPGVDRSGDVFRH-ANAAGTSPHGGVLALAGDDHAAKS--STLPHQSEHAFKAAGMP---VLFPA 181 (1165)
T ss_pred cceeeccceEEEecCcCCccccHhHHHH-HHhhcCCCCCcEEEEEecCCCCcc--ccchhhhHHHHHHcCCc---eeCCC
Confidence 6778899999999999999999999864 444443 2 444455555321 12334444444444455 99999
Q ss_pred CHHHHHHHHHHHHHh---CCCCeEEEcCCCCC------c------cccCCCCCCCCCcccc----ce-------------
Q 003948 599 DEAELMHMVATAAVI---DDRPSCFRFPRGNG------I------GAVLPPNNKGTPLEIG----KG------------- 646 (784)
Q Consensus 599 d~~E~~~~l~~A~~~---~~~Pv~irl~r~~~------~------~~~~p~~~~~~~~~ig----k~------------- 646 (784)
|++|+..+.+.+++. ..-||.++...... . ....|+ ++..+.+ ++
T Consensus 182 ~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~---~f~~~~~g~~~r~~~~p~~~~~~~~~ 258 (1165)
T PRK09193 182 NVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE---DFEMPPGGLNIRWPDPPLEQEARLLD 258 (1165)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc---cccCCcccccccCCCCcHHHHHHHHH
Confidence 999999999999883 45599988642210 0 001111 0111111 00
Q ss_pred ----------------eEeee--CCcEEEEEechhHHHHHHHHHHHhcCCCc--------EEEeeccccCCCcHHHHHHH
Q 003948 647 ----------------RILME--GDRVAILGYGSIVQQCVLAANMLKSQDIS--------VTVADARFCKPLDTDLIRQL 700 (784)
Q Consensus 647 ----------------~vlre--G~dvtIva~Gs~v~~aleAae~L~~~GI~--------v~VId~~slkPlD~e~i~~~ 700 (784)
++... +.++-||++|.....+++|.+.| |++ ++|+.+-+.+|||.+.+++.
T Consensus 259 ~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~~~~~gi~ilKvgm~~PL~~~~i~~F 335 (1165)
T PRK09193 259 YKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEETAARLGIRLYKVGMVWPLEPQGVRAF 335 (1165)
T ss_pred HHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhhhcccCCCEEEeCCCCCCCHHHHHHH
Confidence 11111 35799999999999999998765 454 88999999999999999999
Q ss_pred hccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHH-cCCCHHHHHHHHHHHhcC
Q 003948 701 ANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEE-SGLSSRHISATVLSLLGR 777 (784)
Q Consensus 701 ~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~-~gl~~~~I~~~i~~ll~~ 777 (784)
++..+.|+||||.. .=+..+|.+.+.+.+. ..+...+|-.|. .|. .++-. -.|+++.|.+.+.+.+++
T Consensus 336 a~g~~~vlVVEE~~-p~iE~qlk~~l~~~~~---~~rp~v~GK~~~---~g~--~llp~~gEl~~~~va~~l~~~l~~ 404 (1165)
T PRK09193 336 AEGLDEILVVEEKR-QIIEYQLKEELYNWPD---DVRPRVIGKFDP---QGN--WLLPAHGELSPAIIAKAIARRLLK 404 (1165)
T ss_pred HhcCCEEEEEecCc-hHHHHHHHHHHhhccC---CcCceeEeeeCC---CCC--ccCCCcCCcCHHHHHHHHHHHhhh
Confidence 99999999999975 3456666666654332 122234454331 111 12222 337999999998777653
No 144
>PLN02573 pyruvate decarboxylase
Probab=98.96 E-value=2e-09 Score=127.19 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=90.2
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++++|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+.+-....+.
T Consensus 426 ~~gsmG~glpaaiGa~lA~p----~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~----- 494 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAAP----DKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDG----- 494 (578)
T ss_pred chhhhhhhhhHHHHHHHhCC----CCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeEEEeeccc-----
Confidence 56999999999999999975 78999999999998 77788999999999999999888853211000000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcC-----CeEEeecCCCCHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELG-----LYYIGPVDGHNVED 405 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G-----~~~i~~vDGhd~~~ 405 (784)
.| .+.-.+++..++++|| +++.. | .+.++
T Consensus 495 --------------~~-----------------------------~~~~~~d~~~lA~a~G~~~g~~~~~~-V--~~~~e 528 (578)
T PLN02573 495 --------------PY-----------------------------NVIKNWNYTGLVDAIHNGEGKCWTAK-V--RTEEE 528 (578)
T ss_pred --------------Cc-----------------------------cccCCCCHHHHHHHhcCcCCceeEEE-e--cCHHH
Confidence 00 0001234456788885 66653 3 57999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEecC
Q 003948 406 LVTIFQRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 406 l~~al~~ak~~~~~~P~lI~v~T~k 430 (784)
|.++++++.+...++|++|+|.+.+
T Consensus 529 L~~al~~a~~~~~~~p~lieV~v~~ 553 (578)
T PLN02573 529 LIEAIATATGEKKDCLCFIEVIVHK 553 (578)
T ss_pred HHHHHHHHHhhCCCCcEEEEEEcCc
Confidence 9999999874224889999999863
No 145
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.94 E-value=3e-09 Score=113.84 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=91.4
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 003948 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~ 332 (784)
|.+|.++|+|+|+++|. ++++|||++|||++.. +....|.+|.+++.|+++||.||+.+.+ |..+..+..+.+.
T Consensus 60 ~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~-iG~~eL~tA~r~nl~i~~IV~NN~~Yg~-t~~Q~s~~t~~g~ 133 (280)
T PRK11869 60 TLHGRAIPAATAVKATN----PELTVIAEGGDGDMYA-EGGNHLIHAIRRNPDITVLVHNNQVYGL-TKGQASPTTLKGF 133 (280)
T ss_pred cccccHHHHHHHHHHHC----CCCcEEEEECchHHhh-CcHHHHHHHHHhCcCcEEEEEECHHHhh-hcceecCCCCCCc
Confidence 44788899999998875 4889999999999761 2256799999999999999999984322 1111111111110
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHH
Q 003948 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR 412 (784)
Q Consensus 333 l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ 412 (784)
-. +.- .+.......+...+++++|..++...+-.+++++.+++++
T Consensus 134 ~~-----------------------~~~------------p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~ 178 (280)
T PRK11869 134 KT-----------------------PTQ------------PWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKE 178 (280)
T ss_pred cc-----------------------ccC------------CCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHH
Confidence 00 000 0000001235567799999998865555799999999999
Q ss_pred hhcCCCCCcEEEEEEec
Q 003948 413 VKEMPAPGPVLIHVVTE 429 (784)
Q Consensus 413 ak~~~~~~P~lI~v~T~ 429 (784)
+.+ .++|++|+|.+.
T Consensus 179 Al~--~~Gp~lIeV~~p 193 (280)
T PRK11869 179 AIK--HKGLAIVDIFQP 193 (280)
T ss_pred HHh--CCCCEEEEEECC
Confidence 987 589999999875
No 146
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=98.92 E-value=4.7e-09 Score=113.59 Aligned_cols=134 Identities=21% Similarity=0.285 Sum_probs=89.7
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 003948 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~ 332 (784)
|.+|.++|+|+|+++|.+ +.+|||+.|||++. ++....|.+|.+.+.|+++||.||+.+.+-.. +..++.+.+.
T Consensus 70 g~mG~alpaAiGaklA~p----d~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~g-Q~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLANP----DLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGLTKG-QASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHHCC----CCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhcccC-cccCCcCCCc
Confidence 677889999999999864 88999999999972 23345799999999999999999984332110 1000000000
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHH
Q 003948 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR 412 (784)
Q Consensus 333 l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ 412 (784)
. ++. ..+....-..+...+++++|+.++....-.+.++|.+++++
T Consensus 144 ~-----------------------~~~------------~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~ 188 (301)
T PRK05778 144 K-----------------------TKT------------APYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKK 188 (301)
T ss_pred c-----------------------ccc------------ccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHH
Confidence 0 000 00000001235567799999987644345789999999999
Q ss_pred hhcCCCCCcEEEEEEec
Q 003948 413 VKEMPAPGPVLIHVVTE 429 (784)
Q Consensus 413 ak~~~~~~P~lI~v~T~ 429 (784)
+.+ .++|.+|+|.+.
T Consensus 189 A~~--~~GpalIeV~~~ 203 (301)
T PRK05778 189 AIS--HKGFAFIDVLSP 203 (301)
T ss_pred HHh--CCCCEEEEEcCC
Confidence 986 589999998764
No 147
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.92 E-value=4.8e-09 Score=110.26 Aligned_cols=140 Identities=22% Similarity=0.318 Sum_probs=89.8
Q ss_pred CCcccchhHHHHHHHHHHHHHh-CCCCeEEEEEcCCccc-chhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCC
Q 003948 251 GAGHSSTSISAGLGMAVARDIL-GKNNNVISVIGDGAMT-AGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPAT 328 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~-g~~~~Vv~viGDGal~-eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~ 328 (784)
+.|.+|+++++|+|.++|.... .++++|||+.|||++. .| ...+.++.+++.|+++||.||+.+.+ +..++....
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g--~~~l~ta~~~~l~i~ivVlNN~~yg~-~~~q~~~~~ 138 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG--FGALSHSLFRGEDITVIVLDNEVYSN-TGGQRSGAT 138 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc--HHHHHHHHHcCCCeEEEEECCccccC-CCCCCCCCC
Confidence 4599999999999998882111 2478999999999874 34 23577777889999999999985332 111110000
Q ss_pred CcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 329 ~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
.-+.. + .........-.++..++++++|+.++..+.=.+.++|.+
T Consensus 139 ~~g~~-----------------------~------------~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~ 183 (237)
T cd02018 139 PLGAD-----------------------S------------KMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLK 183 (237)
T ss_pred cCCCc-----------------------c------------cccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHH
Confidence 00000 0 000000011124566789999999875333367999999
Q ss_pred HHHHhhcCCCCCcEEEEEEec
Q 003948 409 IFQRVKEMPAPGPVLIHVVTE 429 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~ 429 (784)
+++++.+ +.++|++|+|.+.
T Consensus 184 al~~al~-~~~GP~lI~v~i~ 203 (237)
T cd02018 184 VVKEAIS-RTDGPTFIHAYTP 203 (237)
T ss_pred HHHHHHh-cCCCCEEEEEeCC
Confidence 9999874 1478999999964
No 148
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=98.90 E-value=4.5e-09 Score=123.99 Aligned_cols=128 Identities=19% Similarity=0.196 Sum_probs=89.4
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
|.|.+|+++|+|+|+++| . +++|+|++|||+++. ...++.+|.++++|+++||.||+.+.+-.....+ ...
T Consensus 423 g~~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~~--~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~-~~~- 493 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-S----AKPTVALIGDLSFLH--DLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQP-EEE- 493 (568)
T ss_pred CccchhhHHHHHHHHHhc-C----CCCEEEEechHHhhc--CcHHHHhhcccCCCeEEEEEECCCCccccCCCCC-CCc-
Confidence 457799999999999988 3 788999999999994 4467999999999999999888742210000000 000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.... .+....-..++..++++||+.+... ++.++|.+++
T Consensus 494 -----------------------------------~~~~---~~~~~~~~~df~~lA~a~G~~~~~V---~~~~eL~~al 532 (568)
T PRK07449 494 -----------------------------------PVFE---RFFGTPHGVDFAHAAAMYGLEYHRP---ETWAELEEAL 532 (568)
T ss_pred -----------------------------------chhh---HhhcCCCCCCHHHHHHHcCCCccCC---CCHHHHHHHH
Confidence 0000 0000011245667899999987633 6899999999
Q ss_pred HHhhcCCCCCcEEEEEEecC
Q 003948 411 QRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~k 430 (784)
+++.+ .++|++|+|.+.+
T Consensus 533 ~~a~~--~~~p~lIev~id~ 550 (568)
T PRK07449 533 ADALP--TPGLTVIEVKTNR 550 (568)
T ss_pred HHHhc--CCCCEEEEEeCCh
Confidence 99976 5899999999853
No 149
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.88 E-value=6.9e-09 Score=111.15 Aligned_cols=136 Identities=18% Similarity=0.202 Sum_probs=87.6
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 003948 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~ 332 (784)
+.+|.++|+|+|+++|.+ +++|||++|||+++. +.-..+.+|.+++.|+++||.||+...+ +..+..+..+.+.
T Consensus 68 ~~~G~alPaAiGaklA~P----dr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGm-t~~Q~~~~t~~g~ 141 (277)
T PRK09628 68 TTHGRAVAYATGIKLANP----DKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGL-TNSQTSPTTPKGM 141 (277)
T ss_pred eccccHHHHHHHHHHHCC----CCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhc-ceecccCCCCCCc
Confidence 356789999999999865 899999999999853 2234467789999999999999974322 1111000000000
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHH
Q 003948 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR 412 (784)
Q Consensus 333 l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ 412 (784)
. ......|. ..-..+...+++++|+.++....=.+.++|.+++++
T Consensus 142 ~---------------------~~~~~~g~--------------~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~ 186 (277)
T PRK09628 142 W---------------------TVTAQYGN--------------IDPTFDACKLATAAGASFVARESVIDPQKLEKLLVK 186 (277)
T ss_pred e---------------------eeeccCCC--------------cCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHH
Confidence 0 00000000 000124467799999987522233689999999999
Q ss_pred hhcCCCCCcEEEEEEecCC
Q 003948 413 VKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 413 ak~~~~~~P~lI~v~T~kG 431 (784)
+.+ .++|++|+|.+.--
T Consensus 187 Al~--~~Gp~lIeV~~~c~ 203 (277)
T PRK09628 187 GFS--HKGFSFFDVFSNCH 203 (277)
T ss_pred HHh--CCCCEEEEEcCCCC
Confidence 987 58999999987643
No 150
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.86 E-value=8.9e-09 Score=110.27 Aligned_cols=134 Identities=19% Similarity=0.254 Sum_probs=92.3
Q ss_pred CcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCC-cccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDG-al~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
.|.+|.++|+|+|+++|++ +.+||+++||| ++..| ...|.+|.+.+.|+++||.||+.+.+ |..|..+..+.
T Consensus 58 ~~~~G~alp~A~GaklA~P----d~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygm-tggQ~s~~t~~ 130 (279)
T PRK11866 58 HGIHGRVLPIATGVKWANP----KLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGL-TTGQASPTTPR 130 (279)
T ss_pred ccccccHHHHHHHHHHHCC----CCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhh-hcccccCCCCC
Confidence 4667889999999999865 78999999999 68755 46799999999999999999974222 11111111111
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
+.... ....|... ...+...+++++|..++......+.+++.+++
T Consensus 131 g~~t~---------------------~t~~g~~~--------------~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l 175 (279)
T PRK11866 131 GVKTK---------------------TTPDGNIE--------------EPFNPIALALAAGATFVARGFSGDVKHLKEII 175 (279)
T ss_pred Cceee---------------------ccCCCCCC--------------CCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHH
Confidence 11000 00000000 00144567999999887666668999999999
Q ss_pred HHhhcCCCCCcEEEEEEec
Q 003948 411 QRVKEMPAPGPVLIHVVTE 429 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~ 429 (784)
+++.+ .++|.+|++...
T Consensus 176 ~~Al~--~~Gps~I~v~~p 192 (279)
T PRK11866 176 KEAIK--HKGFSFIDVLSP 192 (279)
T ss_pred HHHHh--CCCCEEEEEeCC
Confidence 99987 589999999875
No 151
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.86 E-value=6.5e-09 Score=121.77 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=89.4
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+++|. ++++++++|||+++ |...+|.+|.++++|+++||.||+.+.+-...+.
T Consensus 401 ~~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~------ 467 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRVFQP------ 467 (535)
T ss_pred ccchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccceeehhcc------
Confidence 4589999999999999985 35678899999998 7778899999999999999988874221000000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
...+ .++-..++.+++++||.++... ++.++|.+++
T Consensus 468 ----------------------------------------~~~~-~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al 503 (535)
T TIGR03394 468 ----------------------------------------ESAF-NDLDDWRFADMAAGMGGDGVRV---RTRAELAAAL 503 (535)
T ss_pred ----------------------------------------CCCc-ccCCCCCHHHHHHHcCCCceEe---CCHHHHHHHH
Confidence 0000 0111245567799999987643 6899999999
Q ss_pred HHhhcCCCCCcEEEEEEecCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG 431 (784)
+++.+. .++|++|+|.+.+.
T Consensus 504 ~~a~~~-~~~p~lIev~i~~~ 523 (535)
T TIGR03394 504 DKAFAT-RGRFQLIEAMLPRG 523 (535)
T ss_pred HHHHhc-CCCeEEEEEECCcc
Confidence 998753 35689999998643
No 152
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.84 E-value=1.6e-07 Score=115.93 Aligned_cols=300 Identities=17% Similarity=0.118 Sum_probs=180.2
Q ss_pred hhHHHHHHHHHHHHHhhCC----CEEEEecCCCCCC--Ch-hhhHHh---CC--CCeeeccccHHHH---------HHHH
Q 003948 465 LTYTQYFAESLIKEAETDD----KIVAIHAAMGGGT--GL-NYFQKR---FP--DRCFDVGIAEQHA---------VTFA 523 (784)
Q Consensus 465 ~s~~~af~~aL~~l~~~d~----~iv~i~aD~ggs~--gl-~~f~~~---~p--~R~~d~GIaE~~~---------vg~A 523 (784)
++=.+|+.+.+..-.++|. +.-.+-....|+. ++ ..|.+. .. +-+|+.|++|.-+ +.++
T Consensus 31 l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq~~e~~ 110 (1186)
T PRK13029 31 ISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQQLELD 110 (1186)
T ss_pred ecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhhhcccc
Confidence 4556777777655444442 2111222344443 22 223221 12 3789999999999 5555
Q ss_pred HHHHhcCCeeEEEecHhHHHHHHHHHHHHhh-cCCCC---EEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCC
Q 003948 524 AGLASEGVKPFCAIYSSFLQRGYDQVVHDVD-LQKLP---VRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSD 599 (784)
Q Consensus 524 aGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a-~~~lp---V~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd 599 (784)
.|.++.|.+.+++.-.+.+.|+.|.+++... +.... |++++|..|... -.+-|+.+.......|| |+.|+|
T Consensus 111 ~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~S--Sq~eqdSr~~~~~a~iP---vl~Ps~ 185 (1186)
T PRK13029 111 PGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKS--SSVAHQSDHTFIAWGIP---VLYPAS 185 (1186)
T ss_pred cceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCcc--ccCHHHHHHHHHHcCCc---eeCCCC
Confidence 6666678999999999999999999875431 33332 444455555321 23344444444444455 999999
Q ss_pred HHHHHHHHHHHHHh---CCCCeEEEcCCCCCc--------c----ccCCCCCCCCC------cc----------------
Q 003948 600 EAELMHMVATAAVI---DDRPSCFRFPRGNGI--------G----AVLPPNNKGTP------LE---------------- 642 (784)
Q Consensus 600 ~~E~~~~l~~A~~~---~~~Pv~irl~r~~~~--------~----~~~p~~~~~~~------~~---------------- 642 (784)
++|+..+...+++. .+-||.++....... . ...|+.....+ +.
T Consensus 186 ~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p~~~e~~~~~~kl~ 265 (1186)
T PRK13029 186 VQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLAQEERMLEFKWY 265 (1186)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcccccCCccccccccCCCcHHHHHHHHHHHHH
Confidence 99999999999883 455999886432110 0 00111000000 00
Q ss_pred ----ccc---e-eEe--eeCCcEEEEEechhHHHHHHHHHHHhc-----CCCcEEEeeccccCCCcHHHHHHHhccCCeE
Q 003948 643 ----IGK---G-RIL--MEGDRVAILGYGSIVQQCVLAANMLKS-----QDISVTVADARFCKPLDTDLIRQLANEHEIL 707 (784)
Q Consensus 643 ----igk---~-~vl--reG~dvtIva~Gs~v~~aleAae~L~~-----~GI~v~VId~~slkPlD~e~i~~~~~~~~~v 707 (784)
+.. - ++. .++.++-||++|.....+++|.+.|-- +-+.++|+.+-+.+|||.+.+++.++..+.|
T Consensus 266 a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~v 345 (1186)
T PRK13029 266 AALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLLKVGCVWPLDPQSVREFAQGLEEV 345 (1186)
T ss_pred HHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCCEEEeCCCCCCCHHHHHHHHhcCCEE
Confidence 000 0 111 123679999999999999999876621 1123889999999999999999999999999
Q ss_pred EEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcc---cc-----cCCCHHHHHHH-cCCCHHHHHHHHHHHh
Q 003948 708 ITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDR---YI-----DHGSPADQLEE-SGLSSRHISATVLSLL 775 (784)
Q Consensus 708 VvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~---f~-----~~g~~~elle~-~gl~~~~I~~~i~~ll 775 (784)
+||||.. .=+..+|.+.+.+.+. ..+...+|-.|. -+ +.|. .++-. -.|+++.|...+.+.+
T Consensus 346 lVVEE~~-p~iE~qlk~~l~~~~~---~~rp~v~GK~~~~~~~~~~~~~~~g~--~llp~~gEL~p~~va~~l~~~l 416 (1186)
T PRK13029 346 LVVEEKR-AVIEYQLKEELYNWRE---DVRPAIFGKFDHRDGAGGEWSVPAGR--WLLPAHAELSPALIAKAIARRL 416 (1186)
T ss_pred EEEecCc-hHHHHHHHHHHhhccC---CcCCeeEecccccccccccccccccC--CCCCcccCcCHHHHHHHHHHHH
Confidence 9999975 3456666666654332 122234454330 00 0111 12222 3389999999887766
No 153
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.83 E-value=3.9e-08 Score=106.00 Aligned_cols=152 Identities=23% Similarity=0.375 Sum_probs=105.4
Q ss_pred cCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcc-cchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCC
Q 003948 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAM-TAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPAT 328 (784)
Q Consensus 250 ~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal-~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~ 328 (784)
...+..|.+++.|.|++.|.+.++++..|||+.|||.+ ..| .+++..|.+.+.|+++||.||+..+ .|.-|..++.
T Consensus 66 ~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y~-nTGgQ~S~~T 142 (299)
T PRK11865 66 WIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEAYM-NTGIQRSGST 142 (299)
T ss_pred cchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCcccc-CCCCCCCCCC
Confidence 34566777899999999998887778899999999987 444 4899999999999999999999433 3444444444
Q ss_pred CcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 329 ~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
+.|+..+. ...|.... .+..-..+...++.++|..|+..++-.|+.++.+
T Consensus 143 p~Ga~t~t---------------------sp~Gk~~~---------G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~ 192 (299)
T PRK11865 143 PFGASTTT---------------------SPAGKYSR---------GEDRPKKNMPLIMAAHGIPYVATASIGYPEDFME 192 (299)
T ss_pred CCCccccc---------------------CCCCcccC---------CCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHH
Confidence 44442100 00010000 0000001223457888998887888789999999
Q ss_pred HHHHhhcCCCCCcEEEEEEec--CCCCCCh
Q 003948 409 IFQRVKEMPAPGPVLIHVVTE--KGKGYPP 436 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~--kG~G~~~ 436 (784)
++++|.+ .++|.+||+++. .|+|+.+
T Consensus 193 ~i~~A~~--~~Gps~I~v~sPC~~~~~~~~ 220 (299)
T PRK11865 193 KVKKAKE--VEGPAYIQVLQPCPTGWGFPP 220 (299)
T ss_pred HHHHHHh--CCCCEEEEEECCCCCCCCCCH
Confidence 9999987 579999999885 4555544
No 154
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.79 E-value=2.2e-08 Score=107.92 Aligned_cols=134 Identities=17% Similarity=0.246 Sum_probs=88.8
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCc-ccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 003948 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGA-MTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVG 331 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGa-l~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~ 331 (784)
|.+|.++|+|+|+++|++ +.+|||++|||+ ++.| ...+.+|.+.+.|+++||.||+.+.+-. .+..+..+.+
T Consensus 69 g~mG~alpaAiGaklA~P----d~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt~-~q~s~tt~~g 141 (286)
T PRK11867 69 TIHGRALAIATGLKLANP----DLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLTK-GQYSPTSPVG 141 (286)
T ss_pred hhhhcHHHHHHHHHHhCC----CCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhhc-CccCCCCCCC
Confidence 778999999999999864 899999999995 7644 4579999999999999999997422211 1111110000
Q ss_pred hhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHH
Q 003948 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ 411 (784)
Q Consensus 332 ~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~ 411 (784)
... .....|.. + ...+...+++++|..++....-.+.+++.++++
T Consensus 142 ~~~---------------------~~~~~g~~-~-------------~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~ 186 (286)
T PRK11867 142 FVT---------------------KTTPYGSI-E-------------PPFNPVELALGAGATFVARGFDSDVKQLTELIK 186 (286)
T ss_pred ccc---------------------ccccCCCC-C-------------CCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHH
Confidence 000 00000000 0 012334568889987765444468999999999
Q ss_pred HhhcCCCCCcEEEEEEecC
Q 003948 412 RVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 412 ~ak~~~~~~P~lI~v~T~k 430 (784)
++.+ .++|++|++.+.-
T Consensus 187 ~Al~--~~Gp~lIev~~~C 203 (286)
T PRK11867 187 AAIN--HKGFSFVEILQPC 203 (286)
T ss_pred HHHh--CCCCEEEEEeCCC
Confidence 9986 5899999998753
No 155
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.71 E-value=5e-08 Score=104.84 Aligned_cols=134 Identities=17% Similarity=0.208 Sum_probs=83.4
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 003948 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~ 332 (784)
|.+|.++|+|+|+++|++ +.+|||++|||++. ++....+.+|.+.+.|+++||.||+.+.+-. .+..+..+.+.
T Consensus 53 t~mG~alPaAiGaklA~P----d~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~-gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLANP----HLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVYGLTK-GQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHHCC----CCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHHHhhh-cccccCccCCc
Confidence 445889999999998864 89999999999963 3445779999999999999999997422211 11000100000
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHH
Q 003948 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR 412 (784)
Q Consensus 333 l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ 412 (784)
-. . +...|... ..+.++...+++++|+... ..-.+.++|.+++++
T Consensus 127 ~~------~---------------~~~~g~~~------------~~~np~~~a~A~g~g~va~--~~~~~~~eL~~ai~~ 171 (287)
T TIGR02177 127 KT------K---------------SLPYPNIQ------------DPVNPLLLAIALGYTFVAR--GFSGDVAHLKEIIKE 171 (287)
T ss_pred ce------e---------------ecccCccC------------CCCCHHHHHHhCCCCeEEE--EecCCHHHHHHHHHH
Confidence 00 0 00000000 0011112234666665443 323689999999999
Q ss_pred hhcCCCCCcEEEEEEec
Q 003948 413 VKEMPAPGPVLIHVVTE 429 (784)
Q Consensus 413 ak~~~~~~P~lI~v~T~ 429 (784)
+.+ .++|++|+|.+.
T Consensus 172 Al~--~~GpslIeV~~p 186 (287)
T TIGR02177 172 AIN--HKGYALVDILQP 186 (287)
T ss_pred HHh--CCCCEEEEEeCC
Confidence 987 589999999874
No 156
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.70 E-value=7.5e-07 Score=99.49 Aligned_cols=247 Identities=16% Similarity=0.211 Sum_probs=153.6
Q ss_pred hhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh------------------hhhHHhCCC--CeeeccccHHHHHHHHH
Q 003948 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL------------------NYFQKRFPD--RCFDVGIAEQHAVTFAA 524 (784)
Q Consensus 465 ~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl------------------~~f~~~~p~--R~~d~GIaE~~~vg~Aa 524 (784)
..|..|=+-++-.++-+.-+|.+-+.|+|.++=- +.+.....+ -+-|..++|.+..|+-.
T Consensus 564 iDWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEy 643 (913)
T KOG0451|consen 564 IDWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEY 643 (913)
T ss_pred cchHHHHHHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhc
Confidence 3455555556667777888899999999977511 001000011 24578899999999999
Q ss_pred HHHhcC--CeeEEEe-cHhHHHHHHHHHHHHh----h----cCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhcc-----
Q 003948 525 GLASEG--VKPFCAI-YSSFLQRGYDQVVHDV----D----LQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSC----- 588 (784)
Q Consensus 525 GlA~~G--~~P~~~t-ys~Fl~ra~dQi~~~~----a----~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~----- 588 (784)
||+.+. ..++++. |.+|..-| ||+.|- + +...-+++...| |+.|. ||-|+...--.|+..
T Consensus 644 GmsienP~~L~iWEAQFGDFfNGA--QIIiDTFi~sgE~KWl~ssglvmLLPH-GyDGA-gpeHSSCRiERFLQlCDS~E 719 (913)
T KOG0451|consen 644 GMSIENPNNLIIWEAQFGDFFNGA--QIIIDTFIVSGETKWLESSGLVMLLPH-GYDGA-GPEHSSCRIERFLQLCDSKE 719 (913)
T ss_pred ccccCCcccceeehhhhcccccCc--eEEEeeeecccchhhhhhCCeEEEccC-CcCCC-CCccchhhHHHHHHHhcccc
Confidence 999985 5566665 88886433 332221 1 112234444444 44443 788987543333321
Q ss_pred ------CCCcEEEecCCHHHHHHHHHHHHH-hCCCCeEEEcCCCCCccccCCCCCC-CCCccccce--eEeee------C
Q 003948 589 ------LPNMVVMAPSDEAELMHMVATAAV-IDDRPSCFRFPRGNGIGAVLPPNNK-GTPLEIGKG--RILME------G 652 (784)
Q Consensus 589 ------iPn~~V~~Psd~~E~~~~l~~A~~-~~~~Pv~irl~r~~~~~~~~p~~~~-~~~~~igk~--~vlre------G 652 (784)
--||.|+-|.++.+..++++.-+. ....|.++.-|+..+. +|.... -..+..|.- .|+.+ .
T Consensus 720 ~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLR---lPaA~ST~~ef~PGTtf~nVigd~~~~p~k 796 (913)
T KOG0451|consen 720 TSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLR---LPAATSTHEEFQPGTTFHNVIGDTIAKPEK 796 (913)
T ss_pred ccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhh---CcchhhhHhhcCCCccccccccccccChhH
Confidence 236899999999999999987655 4556888877764321 221000 001111111 12222 1
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCC----eEEEEcCCC-cCCcH
Q 003948 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE----ILITVEEGS-VGGFG 719 (784)
Q Consensus 653 ~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~----~vVvvEe~~-~gG~g 719 (784)
-+-+|+++|-......++.+.+.... .+.++.+-++-|||.+.+...+++++ .|..-||.. .|-|.
T Consensus 797 vkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWs 867 (913)
T KOG0451|consen 797 VKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWS 867 (913)
T ss_pred heEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcce
Confidence 25678899999988888877664333 37899999999999999988887664 567778876 46663
No 157
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.68 E-value=5.8e-08 Score=115.15 Aligned_cols=127 Identities=24% Similarity=0.348 Sum_probs=89.6
Q ss_pred CcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhh-HHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQA-YEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~-~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
.|.+|.++++|+|+++|.. +++||+++|||++. +. ..+|.+|.+++.|+++||-||+...+ +..+.....+.
T Consensus 402 ~~~mG~~~~~AiGa~~a~p----~~~Vv~i~GDG~f~--~~g~~eL~tav~~~~~i~~vVlnN~~~g~-~~~q~~~~~~~ 474 (595)
T TIGR03336 402 TLCMGASIGVASGLSKAGE----KQRIVAFIGDSTFF--HTGIPGLINAVYNKANITVVILDNRITAM-TGHQPNPGTGV 474 (595)
T ss_pred eeccCchHHHHhhhhhcCC----CCCEEEEeccchhh--hcCHHHHHHHHHcCCCeEEEEEcCcceec-cCCCCCCCCCC
Confidence 4789999999999998854 78999999999998 32 45799999999999999999974322 11010000000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
. ..+ ...-..+...+++++|+.++...+-.+++++.+++
T Consensus 475 ~---------------------------~~~--------------~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al 513 (595)
T TIGR03336 475 T---------------------------GMG--------------EATKEISIEELCRASGVEFVEVVDPLNVKETIEVF 513 (595)
T ss_pred C---------------------------CCC--------------CcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHH
Confidence 0 000 00012344567999999988776777889999999
Q ss_pred HHhhcCCCCCcEEEEEEe
Q 003948 411 QRVKEMPAPGPVLIHVVT 428 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T 428 (784)
+++.+ .++|++|++..
T Consensus 514 ~~a~~--~~gp~li~v~~ 529 (595)
T TIGR03336 514 KAALA--AEGVSVIIAKQ 529 (595)
T ss_pred HHHHh--cCCCEEEEEcc
Confidence 99986 57999999864
No 158
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.63 E-value=6.8e-08 Score=108.33 Aligned_cols=124 Identities=21% Similarity=0.278 Sum_probs=86.4
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcc
Q 003948 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVG 331 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~ 331 (784)
||.|+++|+|+|.++|.+ +++++.++|||++| ++-+++..--+++ .|+|||+||+|+ ++...-+ |+.
T Consensus 411 GSIG~t~pAalGa~~A~~----drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GY-TIEr~IH-g~~---- 478 (557)
T COG3961 411 GSIGYTLPAALGAALAAP----DRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGY-TIERAIH-GPT---- 478 (557)
T ss_pred hhcccccHhhhhhhhcCC----CccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCc-EEEehhc-CCC----
Confidence 899999999999999987 89999999999999 7778899999998 778888888886 4432222 221
Q ss_pred hhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEE-eecCCCCHHHHHHHH
Q 003948 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYI-GPVDGHNVEDLVTIF 410 (784)
Q Consensus 332 ~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i-~~vDGhd~~~l~~al 410 (784)
..|+.+..|-| .++.++||..-. ....-..-+++..++
T Consensus 479 ------------~~YNdI~~Wd~-----------------------------~~l~~afg~~~~~~~~~~~~~~~l~~~~ 517 (557)
T COG3961 479 ------------APYNDIQSWDY-----------------------------TALPEAFGAKNGEAKFRATTGEELALAL 517 (557)
T ss_pred ------------cCcccccccch-----------------------------hhhhhhcCCCCceEEEeecChHHHHHHH
Confidence 23555544421 234677764211 001113456777788
Q ss_pred HHhhcCCCCCcEEEEEEecC
Q 003948 411 QRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~k 430 (784)
+.+.+. .+++.+|||...+
T Consensus 518 ~~~~~~-~~~i~lIEv~lp~ 536 (557)
T COG3961 518 DVAFAN-NDRIRLIEVMLPV 536 (557)
T ss_pred HHHhcC-CCceEEEEEecCc
Confidence 877763 5789999998753
No 159
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.54 E-value=2.3e-07 Score=121.21 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=90.4
Q ss_pred CCcccch--hHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhc--CCCEEEEEECCCCCCcCccCCCCC
Q 003948 251 GAGHSST--SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL--DANLIVVLNDNKQVSLPTATLDGP 326 (784)
Q Consensus 251 g~G~~G~--~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~--~~nlivIv~dN~~~s~~t~~~dg~ 326 (784)
+.|.+|. ++|.|+|+++|. +++|+|++|||+++ +...+|.+|.++ +.|+++||.||+...+-...
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l---- 825 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGGAIFSLL---- 825 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcC----
Confidence 4578888 599999999884 67899999999998 677889999874 89998888888742110000
Q ss_pred CCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHH
Q 003948 327 ATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDL 406 (784)
Q Consensus 327 ~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l 406 (784)
++... ..+.. .+.+......++...++++||+++..+ .+.++|
T Consensus 826 --~~~~~-----------------------------~~~~~---~~~~~~~~~~~df~~lA~a~G~~~~rV---~~~~eL 868 (1655)
T PLN02980 826 --PIAKR-----------------------------TEPRV---LNQYFYTSHDISIENLCLAHGVRHLHV---GTKSEL 868 (1655)
T ss_pred --ccCCC-----------------------------Ccchh---HHHHhcCCCCCCHHHHHHHcCCceeec---CCHHHH
Confidence 00000 00000 000000011356678899999998744 689999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEecCC
Q 003948 407 VTIFQRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 407 ~~al~~ak~~~~~~P~lI~v~T~kG 431 (784)
.++++++.+ .++|++|+|.|.+-
T Consensus 869 ~~aL~~a~~--~~~p~lIEV~t~~~ 891 (1655)
T PLN02980 869 EDALFTSQV--EQMDCVVEVESSID 891 (1655)
T ss_pred HHHHHHhhc--cCCCEEEEEecChh
Confidence 999998876 58999999999743
No 160
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.48 E-value=3.5e-06 Score=83.13 Aligned_cols=144 Identities=14% Similarity=0.163 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhCC-CEEEEecCCCCCCChhhhHH--------h-------C---CCCeeeccccHHHHHHHHHHHHhc
Q 003948 469 QYFAESLIKEAETDD-KIVAIHAAMGGGTGLNYFQK--------R-------F---PDRCFDVGIAEQHAVTFAAGLASE 529 (784)
Q Consensus 469 ~af~~aL~~l~~~d~-~iv~i~aD~ggs~gl~~f~~--------~-------~---p~R~~d~GIaE~~~vg~AaGlA~~ 529 (784)
.++++.|.++++.++ ++.+++||...|+.|+...+ . + +++.+..-++|+.+.|++.|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467788888888876 68999999988888753321 0 1 245556679999999999999999
Q ss_pred CCeeEEEecHhHH---HHHHHHHHHH--hh-----cCCCC-EEEEeeCCCC-CCCCCCCcCchhhHhH-hccCCC-cEEE
Q 003948 530 GVKPFCAIYSSFL---QRGYDQVVHD--VD-----LQKLP-VRFAMDRAGL-VGADGPTHCGAFDVTF-MSCLPN-MVVM 595 (784)
Q Consensus 530 G~~P~~~tys~Fl---~ra~dQi~~~--~a-----~~~lp-V~~v~~~~G~-~G~dG~THq~~~dla~-lr~iPn-~~V~ 595 (784)
|.+.++.+|-.|+ .-++.|-..- .+ ....| +.++.++-.. .+.+|.|||+..=+.. +.-.|+ +.||
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~Rvy 161 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVY 161 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EEEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccceee
Confidence 9999999999996 3333332111 11 12223 3444443332 5789999996543333 333444 5799
Q ss_pred ecCCHHHHHHHHHHHHH
Q 003948 596 APSDEAELMHMVATAAV 612 (784)
Q Consensus 596 ~Psd~~E~~~~l~~A~~ 612 (784)
.|+|++-+..++..|++
T Consensus 162 lPpDANtlLav~~~clr 178 (179)
T PF03894_consen 162 LPPDANTLLAVMDHCLR 178 (179)
T ss_dssp E-SSHHHHHHHHHHHHH
T ss_pred cCCcHhHHHHHHHHHhc
Confidence 99999999999999975
No 161
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.31 E-value=1.7e-06 Score=90.60 Aligned_cols=114 Identities=20% Similarity=0.137 Sum_probs=83.9
Q ss_pred eeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCcCchhhHhHhc
Q 003948 509 CFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGAFDVTFMS 587 (784)
Q Consensus 509 ~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~G~dG~THq~~~dla~lr 587 (784)
.+-..-+|.++++++.|+|+.|.|.++.|.+..+..+.|.+ ..++..++|++++. .|+| .+..+++|+...|+.+.+
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~lm~e~l-~~a~~~~~P~V~~~~~R~g-~~~g~~~~~~q~D~~~~~ 115 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPGLNLMAEPL-YWAAGTELPIVIVVVQRAG-PSPGLSTQPEQDDLMAAR 115 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCHHHHHCCCH-HHHHHTT--EEEEEEEB----SSSB--SB-SHHHHHTT
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCcccccHhHH-HHHHHcCCCEEEEEEECCC-CCCCCcCcCChhHHHHHH
Confidence 66777999999999999999999999999999888888887 56789999988777 5665 334478999999987777
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCC
Q 003948 588 CLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (784)
Q Consensus 588 ~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~ 625 (784)
. -++.|++|+|++|+.++...|++ ....|++++.+..
T Consensus 116 d-~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~ 155 (230)
T PF01855_consen 116 D-SGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF 155 (230)
T ss_dssp T-SS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred h-cCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence 4 67889999999999999999987 3456998877543
No 162
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.26 E-value=3.3e-06 Score=93.32 Aligned_cols=136 Identities=21% Similarity=0.321 Sum_probs=97.1
Q ss_pred cccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCC
Q 003948 246 VHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDG 325 (784)
Q Consensus 246 ~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg 325 (784)
-|..+|..-+|+-++.++|+.+| .+++-|++++|||+.. |.+-.|.++..++..+++++-||.-+.
T Consensus 437 YH~EYgfSCMGYEiaG~lG~K~a----~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyG-------- 502 (617)
T COG3962 437 YHLEYGFSCMGYEIAGGLGAKAA----EPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYG-------- 502 (617)
T ss_pred eeeeecccccccccccccccccC----CCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcc--------
Confidence 34556777788889889887744 4589999999999998 777789999999999999999996321
Q ss_pred CCCCcchhhHHHHHhh---hh-hhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCC
Q 003948 326 PATPVGALSSALSKLQ---AS-TNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGH 401 (784)
Q Consensus 326 ~~~~v~~l~~~L~~~~---~~-~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGh 401 (784)
-+ .+|| .+ ..++++|+.... ..++..|+...+++||.....+ +
T Consensus 503 ------CI----n~LQm~~Gg~sf~~~~r~~~~e--------------------~~~~~vDfA~~A~s~Ga~~~kv---~ 549 (617)
T COG3962 503 ------CI----NRLQMATGGASFNNLLRDTDHE--------------------EEILQVDFAAHAESYGAKAYKV---G 549 (617)
T ss_pred ------hh----hhhhhhcCcchhhhhhhhhccc--------------------CCCCcccHHHHHhhcCceeEec---C
Confidence 01 1111 11 112333322100 1233455666799999987644 6
Q ss_pred CHHHHHHHHHHhhcCCCCCcEEEEEEecC
Q 003948 402 NVEDLVTIFQRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 402 d~~~l~~al~~ak~~~~~~P~lI~v~T~k 430 (784)
++++|.++|+.+|+ ..++++|+++|..
T Consensus 550 ~i~eL~aAL~~Ak~--~~~ttvi~I~t~P 576 (617)
T COG3962 550 TIEELEAALADAKA--SDRTTVIVIDTDP 576 (617)
T ss_pred CHHHHHHHHHHHHh--CCCCEEEEEecCC
Confidence 99999999999998 6899999999974
No 163
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.23 E-value=1.7e-05 Score=86.86 Aligned_cols=186 Identities=15% Similarity=0.177 Sum_probs=119.5
Q ss_pred CCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHH
Q 003948 181 HLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSIS 260 (784)
Q Consensus 181 H~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls 260 (784)
.+|...---+.+-.|-.+-++-.|++|.++|-..+-..... +.++++... +. +. -|.|.+|.|||
T Consensus 467 tpGe~ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAq-----fy~w~kP~~---~~----tS---GGLGtMGfGLP 531 (675)
T KOG4166|consen 467 TPGEAIKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQ-----FYNWKKPRQ---WL----TS---GGLGTMGFGLP 531 (675)
T ss_pred CCccccChHHHHHHHHHhccCcCceEEEeccccHHHHHHHH-----HhcccCccc---ee----ec---CCccccccCcc
Confidence 34443333333444444444456799988875554332211 222222111 10 11 16789999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHh
Q 003948 261 AGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKL 340 (784)
Q Consensus 261 ~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~ 340 (784)
+|+|..+|.. +..|+-+-||+++. |....|.++...+.|+-+++-||..+.+ ..
T Consensus 532 AAIGAsVA~P----~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeqGM--------Vt------------ 585 (675)
T KOG4166|consen 532 AAIGASVANP----DAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQGM--------VT------------ 585 (675)
T ss_pred hhhcccccCc----ccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhhhh--------HH------------
Confidence 9999999865 89999999999998 7777899999999999999999974211 10
Q ss_pred hhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCC
Q 003948 341 QASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPG 420 (784)
Q Consensus 341 ~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~ 420 (784)
.++++..+.+..-..-..+++-.+++++|+....+ ..-+||.+.+++..+ .++
T Consensus 586 ----------------------QWq~lFYe~rysHThQ~nPnf~klA~AmGikalRV---~K~edL~~k~kefls--TkG 638 (675)
T KOG4166|consen 586 ----------------------QWQDLFYEARYSHTHQENPNFLKLAAAMGIKALRV---TKKEDLREKIKEFLS--TKG 638 (675)
T ss_pred ----------------------HHHHHHHHhhhccccccCccHHHHHHhcCCchhee---ehHHHHHHHHHHHhC--CCC
Confidence 12333332222211222456667899999987644 567889999988877 589
Q ss_pred cEEEEEEecCCCCC
Q 003948 421 PVLIHVVTEKGKGY 434 (784)
Q Consensus 421 P~lI~v~T~kG~G~ 434 (784)
|++++|...+-.-+
T Consensus 639 PvLleV~v~~kehV 652 (675)
T KOG4166|consen 639 PVLLEVIVPHKEHV 652 (675)
T ss_pred CeEEEEEccCccce
Confidence 99999987654433
No 164
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.23 E-value=0.00017 Score=83.08 Aligned_cols=238 Identities=18% Similarity=0.203 Sum_probs=151.4
Q ss_pred HHHhhCCCEEEEecCCCCCCC------h-h---------hhHHhCCC----CeeeccccHHHHHHHHHHHHhcC--CeeE
Q 003948 477 KEAETDDKIVAIHAAMGGGTG------L-N---------YFQKRFPD----RCFDVGIAEQHAVTFAAGLASEG--VKPF 534 (784)
Q Consensus 477 ~l~~~d~~iv~i~aD~ggs~g------l-~---------~f~~~~p~----R~~d~GIaE~~~vg~AaGlA~~G--~~P~ 534 (784)
.+.++.-.|.+-+.|+..+|= | + .+..-.|+ -+-|..++|.+.+|+-.|.|+.- ...+
T Consensus 661 sLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVl 740 (1017)
T KOG0450|consen 661 SLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVL 740 (1017)
T ss_pred HHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEE
Confidence 455666677888889876641 1 0 11111233 36699999999999999999985 5666
Q ss_pred EEe-cHhHH---HHHHHHHHHHhh----cCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhc-------------------
Q 003948 535 CAI-YSSFL---QRGYDQVVHDVD----LQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMS------------------- 587 (784)
Q Consensus 535 ~~t-ys~Fl---~ra~dQi~~~~a----~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr------------------- 587 (784)
++- |.+|. |..+||++. .+ ....-+++...| |+-| .||-|+...--.|+.
T Consensus 741 WEAQFGDFaNtAQ~IiDQFIs-sGqaKW~rqsGlVllLPH-GyeG-~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Q 817 (1017)
T KOG0450|consen 741 WEAQFGDFANTAQCIIDQFIS-SGQAKWVRQSGLVLLLPH-GYEG-MGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQ 817 (1017)
T ss_pred eehhhccccccchhhHHhHhc-cchhhhhhhcCeEEEccC-CcCC-CCcccccccHHHHHHhccCCCccCCcccHHHHHH
Confidence 665 88884 888999853 22 234445665565 4334 488898643212211
Q ss_pred -cCCCcEEEecCCHHHHHHHHHHHHHh-CCCCeEEEcCCCCCcccc----CCCCCCCCCcc-----ccceeEeeeCCcEE
Q 003948 588 -CLPNMVVMAPSDEAELMHMVATAAVI-DDRPSCFRFPRGNGIGAV----LPPNNKGTPLE-----IGKGRILMEGDRVA 656 (784)
Q Consensus 588 -~iPn~~V~~Psd~~E~~~~l~~A~~~-~~~Pv~irl~r~~~~~~~----~p~~~~~~~~~-----igk~~vlreG~dvt 656 (784)
.-.|++|+-+++|....++++.-+.+ -..|.+|..|+..+.... +.+-.++..+. -|+.-.-.|+-+=.
T Consensus 818 l~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrl 897 (1017)
T KOG0450|consen 818 LQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRL 897 (1017)
T ss_pred HhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceEE
Confidence 12478999999999999999977663 345999999887543110 10000011110 11111112344567
Q ss_pred EEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccC---CeEEEEcCCC-cCCc
Q 003948 657 ILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH---EILITVEEGS-VGGF 718 (784)
Q Consensus 657 Iva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~---~~vVvvEe~~-~gG~ 718 (784)
|+++|-.....-++.+....+ -++.+..+-.|.||+.+.+.+.++++ ..+..-||+. .|.|
T Consensus 898 v~csGkVyydL~k~Rk~~~~~-~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w 962 (1017)
T KOG0450|consen 898 VFCSGKVYYDLTKERKEVGLE-GDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAW 962 (1017)
T ss_pred EEecceEehhhhHHHHhcCcc-cceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCch
Confidence 889998887766666554322 36888899999999999999888766 3566668887 4665
No 165
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.14 E-value=4.7e-06 Score=93.50 Aligned_cols=67 Identities=25% Similarity=0.292 Sum_probs=51.6
Q ss_pred CcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCC
Q 003948 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLD 324 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~d 324 (784)
-||.|.++++++|.|+|.+ +++|+.++|||+++ +.-+.+.++.+|++|.++++.||+.+++..+-++
T Consensus 414 wgsIG~svga~lG~a~a~~----e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GYTIE~~IH~ 480 (561)
T KOG1184|consen 414 WGSIGWSVGATLGYAQAAP----EKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGYTIEVEIHD 480 (561)
T ss_pred EeeccccchhhhhhhhccC----CceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCceEEEEeecC
Confidence 3899999999999999876 79999999999999 5567799999999665555545543355444443
No 166
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.08 E-value=0.00027 Score=84.79 Aligned_cols=205 Identities=18% Similarity=0.209 Sum_probs=130.6
Q ss_pred CeeeccccHHHHHHHHHHHHhcCCeeEEEe---cHhHH---HHHHHHHHHHhh---cCCCCEEEEeeCCCCCCCCCCCcC
Q 003948 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCAI---YSSFL---QRGYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHC 578 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~~P~~~t---ys~Fl---~ra~dQi~~~~a---~~~lpV~~v~~~~G~~G~dG~THq 578 (784)
..+|.+.+|.+++++=.|.+..--+-++.. |.+|. |..+||.+...- .....+++...|+. -| .||.|+
T Consensus 628 ~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPHgy-EG-QGPEHS 705 (906)
T COG0567 628 EVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHGY-EG-QGPEHS 705 (906)
T ss_pred EEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccCCC-CC-CCCcCc
Confidence 467999999999999999999865444433 77775 777888653321 13445566666542 33 589999
Q ss_pred chhhHhHhc--cCCCcEEEecCCHHHHHHHHHHHHH-hCCCCeEEEcCCCCCccccCCCCCCCCCccccce-eEeee---
Q 003948 579 GAFDVTFMS--CLPNMVVMAPSDEAELMHMVATAAV-IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKG-RILME--- 651 (784)
Q Consensus 579 ~~~dla~lr--~iPn~~V~~Psd~~E~~~~l~~A~~-~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~-~vlre--- 651 (784)
....-.++. +=-||+|..|+.+....++++.-+. ....|.++..|+..+..-..... -..+.-++. .++.+
T Consensus 706 SaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~--~~el~~~~F~~vl~d~~~ 783 (906)
T COG0567 706 SARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSS--LEELTEGTFQPVLEDIDE 783 (906)
T ss_pred cchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCc--hhhhchhhhhhhhccccc
Confidence 765544433 2248999999999999999986544 45569999888765321000000 001111111 12222
Q ss_pred -C--CcEEEEEechhHHHHHHHHHHHhcCC-CcEEEeeccccCCCcHHHHHHHhccC----CeEEEEcCCC-cCCcH
Q 003948 652 -G--DRVAILGYGSIVQQCVLAANMLKSQD-ISVTVADARFCKPLDTDLIRQLANEH----EILITVEEGS-VGGFG 719 (784)
Q Consensus 652 -G--~dvtIva~Gs~v~~aleAae~L~~~G-I~v~VId~~slkPlD~e~i~~~~~~~----~~vVvvEe~~-~gG~g 719 (784)
+ -+-+++|+|-+.....+.. ++.| .++.++.+..+.||+.+.+.+.++++ ..+..=||-. .|.|.
T Consensus 784 ~~~~v~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~ 857 (906)
T COG0567 784 LDPKVKRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWY 857 (906)
T ss_pred cccceeeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHH
Confidence 1 2446778888777655544 3334 47888999999999999998887654 3455556654 57765
No 167
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.94 E-value=3.3e-05 Score=86.27 Aligned_cols=133 Identities=20% Similarity=0.264 Sum_probs=79.3
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCC-CcCccCCCCCCCCcc
Q 003948 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQV-SLPTATLDGPATPVG 331 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~-s~~t~~~dg~~~~v~ 331 (784)
|.||-|++.|++.|++ .+++.|+|+-||+++ |...-.+.++.++++|+++||-||+.+ .+.+ ++
T Consensus 430 gTMGVG~Gfalaaa~~----~P~~~V~~veGDsaF--GfSaME~ET~vR~~Lpvv~vV~NN~Giyg~d~---~~------ 494 (571)
T KOG1185|consen 430 GTMGVGLGFALAAALA----APDRKVVCVEGDSAF--GFSAMELETFVRYKLPVVIVVGNNNGIYGLDD---DG------ 494 (571)
T ss_pred cccccchhHHHHHHhh----CCCCeEEEEecCccc--CcchhhHHHHHHhcCCeEEEEecCCcccccCc---cc------
Confidence 4455555555555555 479999999999999 455556889999999988888755422 2211 11
Q ss_pred hhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHH
Q 003948 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ 411 (784)
Q Consensus 332 ~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~ 411 (784)
|.+|++. ..... -+.-.+.. ......+.++||-+.. .| ..+++|..+++
T Consensus 495 --------------~~~I~e~---~~~~~-~p~~~l~~----------~~rY~~v~ka~G~kG~-~v--~t~~el~~~l~ 543 (571)
T KOG1185|consen 495 --------------WKQISEQ---DPTLD-LPPTALLA----------NTRYDKVAKAFGGKGY-FV--STVEELLAALQ 543 (571)
T ss_pred --------------HHHHhhc---CcccC-CCcccccc----------cccHHHHHHHcCCCce-ee--CCHHHHHHHHH
Confidence 2222200 00000 00000000 0112345777876543 23 48999999999
Q ss_pred HhhcCCCCCcEEEEEEecCCC
Q 003948 412 RVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 412 ~ak~~~~~~P~lI~v~T~kG~ 432 (784)
++... +++|++|.|...+..
T Consensus 544 ~a~q~-~~~psvINVlI~p~~ 563 (571)
T KOG1185|consen 544 QACQD-TDKPSVINVLIGPTA 563 (571)
T ss_pred HHHhc-CCCCeEEEEEecccc
Confidence 88763 569999998776543
No 168
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.73 E-value=0.00019 Score=77.79 Aligned_cols=131 Identities=22% Similarity=0.286 Sum_probs=91.2
Q ss_pred chhHHHHHHHHHHHHHhCCCCeEEEEEcCC-cccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhh
Q 003948 256 STSISAGLGMAVARDILGKNNNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALS 334 (784)
Q Consensus 256 G~~ls~AvG~AlA~~~~g~~~~Vv~viGDG-al~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~ 334 (784)
|-+++.|.|+.+|.+ +..||++-||| ++..|. ..+..|.+.+.++++|+-||.- ..-|.-|..++.+.|+-.
T Consensus 73 gra~a~atGik~A~~----~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNev-YgnTggQ~S~tTp~G~~t 145 (294)
T COG1013 73 GRAAAVATGIKLANP----ALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEV-YGNTGGQASPTTPKGAKT 145 (294)
T ss_pred CcchhhHHHHHHhcc----CCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCee-cccCCCccCCCCCCCcee
Confidence 345789999999987 66899999999 676664 5788999999999999999984 334555556666665431
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhh
Q 003948 335 SALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVK 414 (784)
Q Consensus 335 ~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak 414 (784)
+..+.+. ....| .+...++-++|..||..+-=-++.++.+.+++|.
T Consensus 146 -----------------------~t~p~Gk-~~~~k----------~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~ 191 (294)
T COG1013 146 -----------------------KTTPYGK-RSEKK----------KDPGLLAMAAGATYVARASVGDPKDLTEKIKKAA 191 (294)
T ss_pred -----------------------eecCCCC-CcCCC----------CCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHH
Confidence 1110000 00011 1334567888988877665456888888888887
Q ss_pred cCCCCCcEEEEEEec
Q 003948 415 EMPAPGPVLIHVVTE 429 (784)
Q Consensus 415 ~~~~~~P~lI~v~T~ 429 (784)
+ ..||.+|++.+.
T Consensus 192 ~--~~Gps~I~v~sP 204 (294)
T COG1013 192 E--HKGPSFIDVLSP 204 (294)
T ss_pred h--ccCCeEEEEecC
Confidence 7 469999999875
No 169
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.54 E-value=0.0034 Score=61.70 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=80.7
Q ss_pred CCCeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCC--CCCcCchhhH
Q 003948 506 PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGAD--GPTHCGAFDV 583 (784)
Q Consensus 506 p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~d--G~THq~~~dl 583 (784)
.-|++.+- .|++++.+|.|.+..|.+.++.+..+.+..+.+.+. .+...+.|++++....+..+.+ ...|+.....
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG~~n~~~~l~-~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~ 118 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPGLNLMAEALY-LAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAA 118 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcchHHHHHHHHH-HHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHH
Confidence 46788876 999999999999999888555667888888888874 4555689999887443322221 2234434443
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh---CCCCeEEEcC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFP 623 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl~ 623 (784)
.+++ |-.-++.+.+++|+..++..|+.. .++|++++++
T Consensus 119 ~~~~--~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 119 RYGG--HPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HhCC--CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 3433 245678899999999999988872 3479998864
No 170
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.50 E-value=0.00024 Score=82.30 Aligned_cols=124 Identities=26% Similarity=0.393 Sum_probs=81.7
Q ss_pred cchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhh
Q 003948 255 SSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALS 334 (784)
Q Consensus 255 ~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~ 334 (784)
+|.|+++|-|++++. .+++|++||||.+-.- -..++.+|.+.+.|++++|-||....+ | |.++.-+.-
T Consensus 430 mGssig~a~g~~~~~-----~k~~va~iGDsTF~Hs-Gi~~l~nAV~n~~~~~~vvLdN~~tAM-T----GgQp~pg~~- 497 (640)
T COG4231 430 MGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHS-GILALINAVYNKANILVVVLDNRTTAM-T----GGQPHPGTG- 497 (640)
T ss_pred ccchhhhcccccccc-----CCceEEEecccccccc-CcHHHHHHHhcCCCeEEEEEeccchhc-c----CCCCCCCcc-
Confidence 444566666666543 3889999999998654 335799999999999999999985332 3 333321110
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhh
Q 003948 335 SALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVK 414 (784)
Q Consensus 335 ~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak 414 (784)
++ -.|. ....-.+ ..+.+++|..++..+|=+|++++.+++++++
T Consensus 498 -----------~~-----------~~g~--~~~~i~i------------ee~~r~~Gv~~v~~vdp~~~~~~~~~~keal 541 (640)
T COG4231 498 -----------VA-----------AEGT--KSTAIVI------------EEVVRAMGVEDVETVDPYDVKELSEAIKEAL 541 (640)
T ss_pred -----------cc-----------cCCC--ccceeEh------------hHhhhhcCceeeeccCCcchHHHHHHHHHHh
Confidence 00 0000 0000001 1236788988888888899999999999999
Q ss_pred cCCCCCcEEEEEEe
Q 003948 415 EMPAPGPVLIHVVT 428 (784)
Q Consensus 415 ~~~~~~P~lI~v~T 428 (784)
+ .++|.+|+++-
T Consensus 542 e--~~gpsViiak~ 553 (640)
T COG4231 542 E--VPGPSVIIAKR 553 (640)
T ss_pred c--CCCceEEEEcC
Confidence 8 46799888753
No 171
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=97.30 E-value=0.00032 Score=74.97 Aligned_cols=137 Identities=22% Similarity=0.289 Sum_probs=90.7
Q ss_pred CcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 003948 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVG 331 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~ 331 (784)
.|.+|+.||+|+|.-.|. +++.|+++-||-.++ ...|.|...+.+++|.|-++-||-+.
T Consensus 418 agplgwtipaalgv~~ad----p~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnayl--------------- 476 (592)
T COG3960 418 AGPLGWTIPAALGVCAAD----PKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYL--------------- 476 (592)
T ss_pred cCCcccccchhhceeecC----CCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHH---------------
Confidence 699999999999987665 488899999999998 78899999999999999999999762
Q ss_pred hhhHHHHHhhhhhhHHHHHHHHHHhh-hhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 332 ALSSALSKLQASTNFRKLREAAKSIT-KQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 332 ~l~~~L~~~~~~~~~~~lr~~~~~~~-~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
+.+|++-+++. +.. .+-..+.+.....+-++.+.-++.|++|+..+.+ .+.+++..+|
T Consensus 477 ---------------glirqaqr~f~mdy~---v~laf~nin~~~~~gygvdhv~v~eglgckairv---~~p~e~a~af 535 (592)
T COG3960 477 ---------------GLIRQAQRAFDMDYC---VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPAF 535 (592)
T ss_pred ---------------HHHHHHHhcCCccce---eeehhhccCCccccccCccceeehhccCceeEEe---cChHHhhHHH
Confidence 22333321110 000 0000000000011112334456789999988765 5778888888
Q ss_pred HHhhcC--CCCCcEEEEEEecC
Q 003948 411 QRVKEM--PAPGPVLIHVVTEK 430 (784)
Q Consensus 411 ~~ak~~--~~~~P~lI~v~T~k 430 (784)
++++.. +..-|+++++.-++
T Consensus 536 ~~a~~lm~eh~vpvvve~iler 557 (592)
T COG3960 536 EQAKALMAQHRVPVVVEVILER 557 (592)
T ss_pred HHHHHHHHhcCCCeeeehHHHH
Confidence 877642 35689999886543
No 172
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.00064 Score=78.11 Aligned_cols=58 Identities=29% Similarity=0.501 Sum_probs=52.4
Q ss_pred hhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc
Q 003948 387 FEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (784)
Q Consensus 387 fea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~ 448 (784)
|++|||+.+ .|||||+++|.+++.+++.. .++|++|.+.|.+|+|.+..+ +..|||.+
T Consensus 201 ~ea~g~~~~-~V~~~d~d~i~ka~~~a~~~-k~kpt~i~~~t~~g~G~~~ig--~~~~Hg~p 258 (632)
T KOG0523|consen 201 FEAFGWNVI-IVDGGDVDEIRKAIGKAKSV-KGKPTAIKATTFIGRGSPYIG--SESVHGAP 258 (632)
T ss_pred HHHhCceEE-EEcCcCHHHHHHHHhhhhhc-cCCceeeeeeeeeecCccccc--cccccCCc
Confidence 999999987 89999999999999999854 589999999999999998866 57899986
No 173
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=96.97 E-value=0.0051 Score=68.16 Aligned_cols=114 Identities=24% Similarity=0.343 Sum_probs=77.7
Q ss_pred CeEEEEEcCC-cccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHH
Q 003948 276 NNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAK 354 (784)
Q Consensus 276 ~~Vv~viGDG-al~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~ 354 (784)
..||++.||| +...| ..++..|...+.|+++||-||.-++ -|.-|.+++.+.|+..+.
T Consensus 152 ~~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~-nTGgQ~S~tTp~Ga~t~t------------------ 210 (365)
T cd03377 152 KSVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYS-NTGGQASKATPLGAVAKF------------------ 210 (365)
T ss_pred cceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccc-cCCCcCCCCCCCcCcCcc------------------
Confidence 4899999999 44655 4678888888899999999998433 344455566666654211
Q ss_pred HhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecC-CCCHHHHHHHHHHhhcCCCCCcEEEEEEec
Q 003948 355 SITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVD-GHNVEDLVTIFQRVKEMPAPGPVLIHVVTE 429 (784)
Q Consensus 355 ~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vD-Ghd~~~l~~al~~ak~~~~~~P~lI~v~T~ 429 (784)
..-|.... ..+...++.++|..|+..+- |-++.++.+++++|.+ .+||.+|++.+.
T Consensus 211 ---sp~Gk~~~--------------kkd~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~--~~Gps~I~v~sP 267 (365)
T cd03377 211 ---AAAGKRTG--------------KKDLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEA--YDGPSLIIAYSP 267 (365)
T ss_pred ---CCCCCCCC--------------CcCHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhc--CCCCEEEEEEcc
Confidence 00011000 01223456778888877664 3599999999999987 489999999885
No 174
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.79 E-value=0.0099 Score=58.02 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=80.9
Q ss_pred CCeeeccccHHHHHHHHHHHHhcCCe-eEEEe-cHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASEGVK-PFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~~-P~~~t-ys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla 584 (784)
-|++.+ ..|..++.+|.|++..+.+ +++.+ ..+-+..+.+.+ ..+...+.|++++....+.....-.+||......
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l-~~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~ 112 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGL-ANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVA 112 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEeCCCccccccCCcccccCHHH
Confidence 455554 7999999999999998544 44443 577777777776 4567779999998754443222223466666666
Q ss_pred HhccCCCcEEEecCCHHHHHHHHHHHHHhC----CCCeEEEcC
Q 003948 585 FMSCLPNMVVMAPSDEAELMHMVATAAVID----DRPSCFRFP 623 (784)
Q Consensus 585 ~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~----~~Pv~irl~ 623 (784)
+++.+..+ .+...+++|+...+..|+... .+|++|.+|
T Consensus 113 ~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 113 LFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred HHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 77777654 677789999999999888742 569998765
No 175
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=96.60 E-value=0.021 Score=63.98 Aligned_cols=124 Identities=20% Similarity=0.283 Sum_probs=82.5
Q ss_pred HHhCCC-CeeeccccHHHHHHHHHHHHhc-CCeeEEEecHhHHHHHHHHHHHH--hhcCCCCEEEEeeCCCCCC-CCCCC
Q 003948 502 QKRFPD-RCFDVGIAEQHAVTFAAGLASE-GVKPFCAIYSSFLQRGYDQVVHD--VDLQKLPVRFAMDRAGLVG-ADGPT 576 (784)
Q Consensus 502 ~~~~p~-R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~tys~Fl~ra~dQi~~~--~a~~~lpV~~v~~~~G~~G-~dG~T 576 (784)
.++.|+ |++-+ -+|..++++|+|+.+. |.+|++.+-.+.+..+.+.+... ....++|+++++...|-.| .|=|+
T Consensus 21 ~~~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depq 99 (361)
T TIGR03297 21 TDNNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQ 99 (361)
T ss_pred HhcCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCch
Confidence 334443 55544 6799999999999999 99999999666666676665333 2446999999988777655 56688
Q ss_pred cC--chhhHhHhccCCCcEEEe-cCCHHHHHHHHHHHHH---hCCCCeEEEcCCCCC
Q 003948 577 HC--GAFDVTFMSCLPNMVVMA-PSDEAELMHMVATAAV---IDDRPSCFRFPRGNG 627 (784)
Q Consensus 577 Hq--~~~dla~lr~iPn~~V~~-Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~~~ 627 (784)
|. +.--..++..+ ++.... |.++.|....+..|++ ..+.|+.+.+.++..
T Consensus 100 h~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 100 HVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred hhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 84 33223444432 333333 4566666665555544 367899999987653
No 176
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.54 E-value=0.0073 Score=76.05 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=53.9
Q ss_pred CcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 003948 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVG 331 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~ 331 (784)
.-+||.+++.++|++.+. .+++||+++|||.+---- .-|+.+|.+.+.|++++|-||....+ +|.++.-|
T Consensus 467 ~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG-~~al~~AV~~~~nit~~IL~N~~tAM-----TGgQp~~g 536 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSG-SLAIRQAVAAGANITYKILYNDAVAM-----TGGQPVDG 536 (1159)
T ss_pred eeccCccchhhceecccc----CCCCEEEEeccchhhhcC-HHHHHHHHhcCCCeEEEEEeCCcccc-----cCCCCCCC
Confidence 346777888889988773 256899999999986442 23899999999999999999996544 45555444
Q ss_pred hh
Q 003948 332 AL 333 (784)
Q Consensus 332 ~l 333 (784)
.+
T Consensus 537 ~i 538 (1159)
T PRK13030 537 SI 538 (1159)
T ss_pred CC
Confidence 33
No 177
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.38 E-value=0.011 Score=74.33 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=49.3
Q ss_pred CcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCc
Q 003948 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSL 318 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~ 318 (784)
.-+||.+++.++|++.+. .+++||+++|||.+--- -.-|+.+|.+.+.|++++|-+|....+
T Consensus 480 ~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHS-G~~al~~AV~~~~nit~~IL~N~~vAM 541 (1165)
T PRK09193 480 FTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHS-GLLAIRAAVAAGVNITYKILYNDAVAM 541 (1165)
T ss_pred eeccCCcchhhceecccc----CCCcEEEEeccccchhc-CHHHHHHHHhcCCCeEEEEEeCCcccc
Confidence 456777888888988753 35789999999998643 335789999999999999999996544
No 178
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.95 E-value=0.026 Score=71.01 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=52.2
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 003948 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~ 332 (784)
-+||.+++.++|++-+. .+.+||+++|||.+.-- -.-|+.+|.+.+.|++++|-||..+.+ +|.++.-|.
T Consensus 495 ~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHS-G~~alr~AV~~~~nit~kIL~N~avAM-----TGgQp~~G~ 564 (1186)
T PRK13029 495 SQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHS-GLLAIRQAIAAGVNITYKILYNDAVAM-----TGGQPVDGV 564 (1186)
T ss_pred eccCcchhhheeecccC----CCCCEEEEeccccchhc-CHHHHHHHHhcCCCEEEEEEeCcchhc-----cCCCCCCCc
Confidence 45677777888887653 25789999999998643 335789999999999999999996544 455544443
Q ss_pred h
Q 003948 333 L 333 (784)
Q Consensus 333 l 333 (784)
+
T Consensus 565 ~ 565 (1186)
T PRK13029 565 L 565 (1186)
T ss_pred C
Confidence 3
No 179
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.88 E-value=0.24 Score=48.96 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=67.2
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhh-cCCCCEEEEeeCCCCCCCCCCCcCch--hhHhHhccC
Q 003948 513 GIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVD-LQKLPVRFAMDRAGLVGADGPTHCGA--FDVTFMSCL 589 (784)
Q Consensus 513 GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a-~~~lpV~~v~~~~G~~G~dG~THq~~--~dla~lr~i 589 (784)
..+|..++++|+|..+.|.+|.+.+-.+.+..+..-+ .++. ..+.||+++....|-.|.+-+.|... ..-..+..
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l-~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~- 117 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINAL-ASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDT- 117 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHH-HHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHH-
Confidence 5789999999999999898888887444444566555 3555 77999999885544323222222111 11111121
Q ss_pred CCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCC
Q 003948 590 PNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (784)
Q Consensus 590 Pn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~ 625 (784)
-++......+++++ ..+..|++ ..++|++|.+++.
T Consensus 118 ~~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 118 LGIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred cCCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 12234555667777 77766665 3458999988663
No 180
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=95.85 E-value=0.21 Score=57.86 Aligned_cols=193 Identities=18% Similarity=0.283 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCchHHhHHHHhc-CCCC
Q 003948 159 DLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKT-SGLA 237 (784)
Q Consensus 159 ~L~~la~~iR~~ii~~v~~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~-ggl~ 237 (784)
++..+.+..|..+.+.+ .+| ++.-..+...|-... .|.|-+++++. .+. .+++.|-+. .++.
T Consensus 352 ~~~~~~~~~~~~v~~~~---~~~---~~~e~~~a~~l~~~l-p~~~~LFvgNS---mpV-------Rdvd~~~~~~~~~~ 414 (566)
T COG1165 352 EWLALNEKARQAVRDQL---AAE---ALTEAHLAAALADLL-PPQDQLFVGNS---MPV-------RDVDALGQLPAGYR 414 (566)
T ss_pred HHHHHHHHHHHHHHHHh---ccc---CchhhHHHHHHHHhC-CCCCeEEEecC---chh-------hhHHHhccCccCce
Confidence 34444455555554443 333 444444444443333 45777777432 121 123333222 3334
Q ss_pred CCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEE-ECCCC-
Q 003948 238 GFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL-NDNKQ- 315 (784)
Q Consensus 238 g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv-~dN~~- 315 (784)
-|.+|.- +|+= ..+|.|+|++.|. .+.++.++||=++---+. +|-.......|+++|| ||||.
T Consensus 415 v~sNRGA-------~GID-G~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~N--gLl~~k~~~~~ltIvv~NNnGGg 479 (566)
T COG1165 415 VYSNRGA-------SGID-GTVSTALGIARAT-----QKPTVALIGDLSFLHDLN--GLLLLKKVPQPLTIVVVNNNGGG 479 (566)
T ss_pred eecCCCc-------cccc-hhHHHHhhhhhhc-----CCceEEEEechhhhhccc--hHhhcCCCCCCeEEEEEeCCCce
Confidence 4444421 1222 2388999999875 466999999998854332 3444445557766555 55552
Q ss_pred --CCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCe
Q 003948 316 --VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY 393 (784)
Q Consensus 316 --~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~ 393 (784)
.-+|+... + .+.++ +..-+-.-+++.+.+.||+.
T Consensus 480 IF~~Lp~~~~----~------~~fe~----------------------------------~F~tPh~ldF~~la~~y~l~ 515 (566)
T COG1165 480 IFSLLPQAQS----E------PVFER----------------------------------LFGTPHGLDFAHLAATYGLE 515 (566)
T ss_pred eeeeccCCCC----c------chHHH----------------------------------hcCCCCCCCHHHHHHHhCcc
Confidence 12232211 0 00111 11111223445668889988
Q ss_pred EEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCC
Q 003948 394 YIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 394 ~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
|-.+ ++.+++.++++.+-. ..+-++||++|.+-.
T Consensus 516 y~~~---~s~~~l~~~~~~~~~--~~g~~viEvkt~r~~ 549 (566)
T COG1165 516 YHRP---QSWDELGEALDQAWR--RSGTTVIEVKTDRSD 549 (566)
T ss_pred cccc---CcHHHHHHHHhhhcc--CCCcEEEEEecChhH
Confidence 8655 789999999987764 356899999997654
No 181
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=95.58 E-value=0.11 Score=51.88 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=79.0
Q ss_pred hhhHHhCCCCeeeccccHHHHHHHHHHHHhcCCe-eEEEe-cHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCC-CCCC
Q 003948 499 NYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVK-PFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGP 575 (784)
Q Consensus 499 ~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~-P~~~t-ys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G-~dG~ 575 (784)
+.+.+...-|++. ...|++++.+|.|++..+-+ .++.+ ..+-+..+..-+ ..+...+.|++++....+..+ ..+.
T Consensus 32 ~al~~~~~i~~i~-~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~~~ 109 (172)
T PF02776_consen 32 DALEKSPGIRFIP-VRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGL-ANAYADRIPVLVITGQRPSAGEGRGA 109 (172)
T ss_dssp HHHHHTTTSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHH-HHHHHTT-EEEEEEEESSGGGTTTTS
T ss_pred HHhhhhcceeeec-ccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHH-hhcccceeeEEEEecccchhhhcccc
Confidence 3344333356766 59999999999999986444 44444 445554555444 345677999998875444322 2466
Q ss_pred CcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHH----hCCCCeEEEcCCC
Q 003948 576 THCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (784)
Q Consensus 576 THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~----~~~~Pv~irl~r~ 625 (784)
.|+......+++.+-.+ .+.+.+++++...++.|+. ...+|++|.+|..
T Consensus 110 ~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 110 FQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp TTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred cccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 77666666778876644 5666666666666666655 3577999988764
No 182
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=95.03 E-value=0.33 Score=49.65 Aligned_cols=116 Identities=14% Similarity=0.184 Sum_probs=76.9
Q ss_pred CcEEEEEechhH-HHHHHHHHHHhcC--CCcEEEeecccc---CC-------CcHHHHHHHhccCCeEEEEcCCCcCCcH
Q 003948 653 DRVAILGYGSIV-QQCVLAANMLKSQ--DISVTVADARFC---KP-------LDTDLIRQLANEHEILITVEEGSVGGFG 719 (784)
Q Consensus 653 ~dvtIva~Gs~v-~~aleAae~L~~~--GI~v~VId~~sl---kP-------lD~e~i~~~~~~~~~vVvvEe~~~gG~g 719 (784)
.||+|.|.|... .++++|+++|++. +++++||++.-| .| |+.+.+.++....++||+- ..|+.
T Consensus 35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa----fHGYp 110 (203)
T PF09363_consen 35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA----FHGYP 110 (203)
T ss_dssp -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE----ESSEH
T ss_pred CCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE----cCCCH
Confidence 599999999985 7999999999998 999988876533 32 6778899998888887752 46788
Q ss_pred HHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 003948 720 SHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 720 s~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll~ 776 (784)
..|...+-.+. ...++..-|. .+-|..-++-+++-.+++|-=+++..+.+.+.
T Consensus 111 ~~i~~L~~~R~---n~~~~hV~GY-~EeGttTTPFDM~vlN~~dRfhLa~dai~~~~ 163 (203)
T PF09363_consen 111 WLIHRLLFGRP---NHDRFHVHGY-REEGTTTTPFDMRVLNGMDRFHLAKDAIRRVP 163 (203)
T ss_dssp HHHHHHTTTST---TGGGEEEEEE--S---SS-HHHHHHCTT-SHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC---CCCCeEEEee-ccCCCcCchHHHHHHhCCCHHHHHHHHHHHhh
Confidence 88877765432 1234555554 33344557889888899999888877776654
No 183
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=94.17 E-value=0.14 Score=65.52 Aligned_cols=114 Identities=24% Similarity=0.379 Sum_probs=78.3
Q ss_pred CeEEEEEcCC-cccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHH
Q 003948 276 NNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAK 354 (784)
Q Consensus 276 ~~Vv~viGDG-al~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~ 354 (784)
..||++-||| +...| +.++..+...+.|+.+||.||.-++ -|.-|.+++.|.|+..+.
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~-nTggQ~S~~tp~g~~t~~------------------ 1010 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYS-NTGGQSSKATPTGAIAKF------------------ 1010 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccc-cCCCcCCCCCCCcCcccc------------------
Confidence 4799999999 44655 4578888888999999999998433 344455555566554210
Q ss_pred HhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecC-CCCHHHHHHHHHHhhcCCCCCcEEEEEEec
Q 003948 355 SITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVD-GHNVEDLVTIFQRVKEMPAPGPVLIHVVTE 429 (784)
Q Consensus 355 ~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vD-Ghd~~~l~~al~~ak~~~~~~P~lI~v~T~ 429 (784)
..-|... .| .+-..++.++|..|+..+- |-++.++.+++++|.+ .+||.+|++.+.
T Consensus 1011 ---~~~g~~~----~k----------kd~~~~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~--~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1011 ---AAAGKRT----SK----------KDLGMMAMTYGYVYVAQVSMGANMQQTLKAFREAEA--YDGPSIVIAYSP 1067 (1165)
T ss_pred ---CCCCCCC----CC----------cCHHHHHHHCCCCEEEEEecccCHHHHHHHHHHHHc--CCCCEEEEEECC
Confidence 0001000 00 1223457788988887775 6699999999999987 589999999885
No 184
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=93.77 E-value=0.64 Score=46.23 Aligned_cols=115 Identities=10% Similarity=-0.006 Sum_probs=75.7
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~ 585 (784)
|++. .-.|+++..+|.|.|.. |...++. +..+-+..++--+ ..+...+.||+++.............+|......+
T Consensus 40 ~~v~-~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~ 117 (164)
T cd07039 40 EFIQ-VRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGL-YDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLAL 117 (164)
T ss_pred eEEE-eCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCcccccCCCCCcccCHHHH
Confidence 4444 58999999999999986 5433333 3666666665554 45667899999986322211111124676666677
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHHh---CCCCeEEEcCCC
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG 625 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl~r~ 625 (784)
++.+-.+ ...+.++.++...++.|+.. ..+|++|-+|..
T Consensus 118 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 118 FKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 7776654 55666877887777777763 458999987764
No 185
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=93.50 E-value=0.5 Score=47.01 Aligned_cols=113 Identities=14% Similarity=0.114 Sum_probs=68.9
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~ 585 (784)
|++. .-.|++++.+|-|.|.. |...++. +..+.+..+.--+ ..+...+.|++++.........+..++|..++..+
T Consensus 37 ~~v~-~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l 114 (162)
T cd07037 37 RLHV-RVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAV-VEAYYSGVPLLVLTADRPPELRGTGANQTIDQVGL 114 (162)
T ss_pred eEEe-ccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHH-HHHHhcCCCEEEEECCCCHHhcCCCCCcccchhhh
Confidence 4554 48999999999999986 5333433 3677766666555 45677899999986433221222234676666677
Q ss_pred hccCCCcEEEecCCHHH------HHHHHHHHHH----hCCCCeEEEcC
Q 003948 586 MSCLPNMVVMAPSDEAE------LMHMVATAAV----IDDRPSCFRFP 623 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E------~~~~l~~A~~----~~~~Pv~irl~ 623 (784)
++.+-.+ .....++.+ +..+++.|+. -..+|++|-+|
T Consensus 115 ~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 115 FGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred ccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 7765443 233334444 4445555544 34578888664
No 186
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=93.36 E-value=0.89 Score=44.85 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=65.9
Q ss_pred HhCCCCeeeccccHHHHHH----HHHHHHhcCCeeEEEec--HhHHHHHHHHHHHHhhcC-CCCEEEEe-eCCCC--CCC
Q 003948 503 KRFPDRCFDVGIAEQHAVT----FAAGLASEGVKPFCAIY--SSFLQRGYDQVVHDVDLQ-KLPVRFAM-DRAGL--VGA 572 (784)
Q Consensus 503 ~~~p~R~~d~GIaE~~~vg----~AaGlA~~G~~P~~~ty--s~Fl~ra~dQi~~~~a~~-~lpV~~v~-~~~G~--~G~ 572 (784)
...|.+|+. .+.+| .|.|+++.--+|++++. ..|+.-.-+ +..+... ++|+++++ +..++ .+
T Consensus 32 ~~~~~~~~~-----~gsmG~~lp~AiGa~~a~~~~Vv~i~GDG~f~m~~~e--l~t~~~~~~~~i~~vV~nN~~~g~~~- 103 (157)
T cd02001 32 QDRDGHFYM-----LGSMGLAGSIGLGLALGLSRKVIVVDGDGSLLMNPGV--LLTAGEFTPLNLILVVLDNRAYGSTG- 103 (157)
T ss_pred hcCCCCEEe-----ecchhhHHHHHHHHHhcCCCcEEEEECchHHHhcccH--HHHHHHhcCCCEEEEEEeCccccccC-
Confidence 356788886 44444 56777665347787775 445433322 2334445 58987776 55543 22
Q ss_pred CCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 573 DGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 573 dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
.-+++....|..-+..--|+..+...+++|+...++.++. .++|++|-.
T Consensus 104 ~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 104 GQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred CcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1122222233333333335666677899999999999987 678988754
No 187
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=93.15 E-value=0.17 Score=48.54 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=73.3
Q ss_pred ccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchh--hHhHhccCCC
Q 003948 514 IAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAF--DVTFMSCLPN 591 (784)
Q Consensus 514 IaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~--dla~lr~iPn 591 (784)
-+|...+|+|+|+.+.|.+|..-+-.+.+-.....+...-...++|..+++.|.|..+++=+.+-+.- -..+++ .-+
T Consensus 49 tREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe-~~~ 127 (172)
T COG4032 49 TREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKILE-GLE 127 (172)
T ss_pred cchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHHHHh-hcC
Confidence 36888899999999999999988866665444444332233568999999999997665444333211 111222 234
Q ss_pred cEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCC
Q 003948 592 MVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPR 624 (784)
Q Consensus 592 ~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r 624 (784)
+..+.|-.|+|+..++..+.. ....|+.++++.
T Consensus 128 lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 128 LPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 567888999997776665543 367798887753
No 188
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=92.87 E-value=0.73 Score=45.84 Aligned_cols=116 Identities=13% Similarity=0.052 Sum_probs=66.2
Q ss_pred HhCCCCeeeccc-c-HHHHHHHHHHHHhcC-CeeEEEecH--hHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC--C
Q 003948 503 KRFPDRCFDVGI-A-EQHAVTFAAGLASEG-VKPFCAIYS--SFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG--A 572 (784)
Q Consensus 503 ~~~p~R~~d~GI-a-E~~~vg~AaGlA~~G-~~P~~~tys--~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~--~G--~ 572 (784)
-..|.+++..|. . =-..+++|.|+++.. -++++++.. .|+.. ...+ ..++..++|+++++ +..|+ .. .
T Consensus 35 ~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~-~~el-~ta~~~~lpv~ivv~NN~~~~~~~~~~ 112 (172)
T cd02004 35 PRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFS-GMEL-ETAVRYNLPIVVVVGNNGGWYQGLDGQ 112 (172)
T ss_pred ccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCC-HHHH-HHHHHcCCCEEEEEEECcccccchhhh
Confidence 345788887643 2 223555677777764 366666643 34422 2333 56778899977776 44443 10 0
Q ss_pred C----CCCcC----chhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEE
Q 003948 573 D----GPTHC----GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621 (784)
Q Consensus 573 d----G~THq----~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~ir 621 (784)
. +..+. ...|..-+..--|+..+.-.+++|+..+++.++. .++|++|-
T Consensus 113 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~-~~~p~lie 168 (172)
T cd02004 113 QLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTTPEELKPALKRALA-SGKPALIN 168 (172)
T ss_pred hhhccCCCceeccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHH-cCCCEEEE
Confidence 0 00000 1122222222235667777899999999999976 57898874
No 189
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=92.85 E-value=1.1 Score=52.79 Aligned_cols=115 Identities=15% Similarity=0.052 Sum_probs=78.2
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~ 585 (784)
|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++.............||...+..+
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~ 115 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL-ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVAL 115 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH-HHHhhcCCCEEEEeCCCcccccccCcccccchhhh
Confidence 66665 6999999999999974 6444444 4777776666655 45677899999986432221111234887777788
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
++.+-.. .....++.++...+..|+.. ..+|++|-+|..
T Consensus 116 ~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 116 FRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred hhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 8876543 44456777777777766652 357999999875
No 190
>PRK07586 hypothetical protein; Validated
Probab=92.85 E-value=5.1 Score=47.07 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=74.3
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~ 585 (784)
|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++--+ ..+...+.||+++..........-..||......+
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 118 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANL-HNARRARTPIVNIVGDHATYHRKYDAPLTSDIEAL 118 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHH-HHHHhcCCCEEEEecCCchhccCCCcccccchhhh
Confidence 66655 8999999999999985 6444443 5777776666554 45677899999886322211111122444444456
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCCC
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~~ 626 (784)
++.+-.+ .+...++.++..+++.|+.. ..+||+|-+|..-
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv 162 (514)
T PRK07586 119 ARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLILPADV 162 (514)
T ss_pred hccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence 6654322 45566677777777666652 3689999998853
No 191
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=92.62 E-value=1.2 Score=53.36 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=77.4
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla 584 (784)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++.........+...+|......
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~ 121 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAV-ATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMP 121 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHhhcCCCEEEEeCCCCcccCCCCCCcccchhh
Confidence 355554 8999999999999975 6555554 3777666666554 4566779999998733222111122466666666
Q ss_pred HhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCCC
Q 003948 585 FMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN 626 (784)
Q Consensus 585 ~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~~ 626 (784)
+++.+-.. .+...+++++...+..|+. ...+|++|-+|+..
T Consensus 122 l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 122 MFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred hhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 77765443 5566777777777776665 34689999998753
No 192
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.24 E-value=5.8 Score=47.14 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=75.4
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+...+.||+++...... .+. ..+|.....
T Consensus 48 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~ 123 (557)
T PRK08199 48 RVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGV-HTAFQDSTPMILFVGQVARDFRER--EAFQEIDYR 123 (557)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHhhcCCCEEEEecCCccccCCC--CcccccCHH
Confidence 55554 7899999999999986 5433433 4777776666665 4567789999988633222 222 235556666
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
.+++.+-.+ .+...++.++..++..|+.. ..+|++|-+|..
T Consensus 124 ~l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 124 RMFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred Hhhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 677765544 34446777777777777662 357999999865
No 193
>PRK07524 hypothetical protein; Provisional
Probab=92.01 E-value=1.7 Score=51.28 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=76.5
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCC-CCCcCchhh
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGAFD 582 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~d-G~THq~~~d 582 (784)
|++.+ -.|++++.+|.|.|.. |...+|. +..+.+..++--+ ..+...+.||+++...... .+.+ +..|+....
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~ 118 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAM-GQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQ 118 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCChhhcCCCCccccccccH
Confidence 56654 8999999999999975 5444444 5777766666555 5677789999988632221 2322 344553455
Q ss_pred HhHhccCCCcEEEecCCHHHHHHHHHHHHH----hCCCCeEEEcCCC
Q 003948 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (784)
Q Consensus 583 la~lr~iPn~~V~~Psd~~E~~~~l~~A~~----~~~~Pv~irl~r~ 625 (784)
..+++.+-- ..+...++.++...+..|+. ...+|++|-+|+.
T Consensus 119 ~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 119 RAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred HHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 567776543 35666677787777777765 2457999999875
No 194
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=91.93 E-value=1.9 Score=51.37 Aligned_cols=144 Identities=18% Similarity=0.168 Sum_probs=88.4
Q ss_pred HHHHHHHHhhC--CCEEEEecCCCCCCCh---hhhHHhCCCCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHH
Q 003948 472 AESLIKEAETD--DKIVAIHAAMGGGTGL---NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQR 544 (784)
Q Consensus 472 ~~aL~~l~~~d--~~iv~i~aD~ggs~gl---~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~r 544 (784)
++.|.+.+++. +.|+.+. |+..+ +.+.+ .+-+++.+ ..|++++.+|.|+|.. |...+|. ++.+.+..
T Consensus 19 ~~~i~~~L~~~Gv~~vFg~p----G~~~~~l~~al~~-~~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N 92 (571)
T PRK07710 19 AQMLIEALEKEGVEVIFGYP----GGAVLPLYDALYD-CGIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATN 92 (571)
T ss_pred HHHHHHHHHHcCCCEEEeCC----CcchHHHHHHHHh-cCCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 44555555544 3455443 33322 33432 34678865 9999999999999986 5444444 46776656
Q ss_pred HHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCe
Q 003948 545 GYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPS 618 (784)
Q Consensus 545 a~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv 618 (784)
++.-+ ..+...+.||+++...... .+.+ .+|..+...+++.+-.+ .+...++.++..+++.|+.. ..+|+
T Consensus 93 ~~~gl-~~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV 168 (571)
T PRK07710 93 VVTGL-ADAMIDSLPLVVFTGQVATSVIGSD--AFQEADIMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPV 168 (571)
T ss_pred HHHHH-HHHhhcCCCEEEEeccCCccccCCC--Cccccchhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcE
Confidence 65555 4566789999988632221 2322 24445556677765444 34556677777777776663 25899
Q ss_pred EEEcCCC
Q 003948 619 CFRFPRG 625 (784)
Q Consensus 619 ~irl~r~ 625 (784)
+|-+|..
T Consensus 169 ~l~iP~D 175 (571)
T PRK07710 169 LIDIPKD 175 (571)
T ss_pred EEEcChh
Confidence 9999874
No 195
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=91.45 E-value=2 Score=42.52 Aligned_cols=116 Identities=13% Similarity=0.073 Sum_probs=71.3
Q ss_pred CCCeeeccccHHHHHHHHHHHHhcCCeeEEEe--cHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCc----
Q 003948 506 PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTH---- 577 (784)
Q Consensus 506 p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~t--ys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~TH---- 577 (784)
++--+-..-.|++++.+|.|.+..- +|-+++ ..+.+..+..-+ ..+...+.|++++...... .+.....|
T Consensus 34 ~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~ 111 (162)
T cd07038 34 PGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGI-AGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLG 111 (162)
T ss_pred CCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHH-HHHHHcCCCEEEEecCCCccccccccceeeccc
Confidence 3333344589999999999999875 444433 566666666665 4567789999998632221 12212223
Q ss_pred -Cchh-hHhHhccCCCcEEEecCCHHHHHHHHHHHHHh---CCCCeEEEcCC
Q 003948 578 -CGAF-DVTFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPR 624 (784)
Q Consensus 578 -q~~~-dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl~r 624 (784)
+..+ ...+++.+-.+ .....++.++..+++.|+.. .++|++|-+||
T Consensus 112 ~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 112 DGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred ccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 2222 35666655443 34445677777777766662 45799998765
No 196
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=91.37 E-value=2.1 Score=51.06 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=76.9
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~ 585 (784)
|++.+ -.|++++.+|.|.|.. |.-.+|. +..+.+..++.-+ ..+...+.||+++....+........||......+
T Consensus 41 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gl-a~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l 118 (579)
T TIGR03457 41 RFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAI-AAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPM 118 (579)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHH-HHHhhcCCCEEEEeCCCccccCCCCCCcccchhhh
Confidence 55654 7899999999999975 6555554 4777766666555 56677899999986333321111234676666667
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCCC
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN 626 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~~ 626 (784)
++.+-.+ .+...++.++...+..|+. ...+|++|-+|+..
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 119 FQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred hhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 7765433 4455677777776766655 24589999999754
No 197
>PRK12474 hypothetical protein; Provisional
Probab=91.26 E-value=9.4 Score=44.96 Aligned_cols=116 Identities=13% Similarity=0.036 Sum_probs=76.6
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~ 585 (784)
|++.+ -.|++++.+|-|.|.. |...+|. |+.+.+..++--+ ..+...+.||+++.............||......+
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 122 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANL-HNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGF 122 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHH-HHHhhcCCCEEEEeccCchhhcCCCCccccCHHHh
Confidence 66665 8999999999999975 6555444 5777766665554 45667799999886322211111123454555567
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHH----hCCCCeEEEcCCCC
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~----~~~~Pv~irl~r~~ 626 (784)
++.+-.+ .+...++.++..+++.|+. ...+|++|-+|+.-
T Consensus 123 ~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 123 ARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred hhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 7755433 4566788888888888875 23479999998863
No 198
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=91.17 E-value=3.2 Score=49.42 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=90.2
Q ss_pred HHHHHHHHhhC--CCEEEEecCCCCCCCh---hhhHHhCCCCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHH
Q 003948 472 AESLIKEAETD--DKIVAIHAAMGGGTGL---NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQR 544 (784)
Q Consensus 472 ~~aL~~l~~~d--~~iv~i~aD~ggs~gl---~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~r 544 (784)
++.|.+.+++. +.|+.+. |+..+ +.+.+.-.=|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..
T Consensus 13 ~~~i~~~L~~~Gv~~vFgip----G~~~~~l~dal~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 87 (566)
T PRK07282 13 SDLVLETLRDLGVDTIFGYP----GGAVLPLYDAIYNFEGIRHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN 87 (566)
T ss_pred HHHHHHHHHHcCCCEEEecC----CcchHHHHHHHhhcCCceEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 44555555554 3455543 23322 33332211377765 8999999999999975 6555444 47777766
Q ss_pred HHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCe
Q 003948 545 GYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPS 618 (784)
Q Consensus 545 a~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv 618 (784)
++.-+ ..+...+.||+++...... .+.+ .+|......+++.+-.+ .....++.++..++..|+.. ..+|+
T Consensus 88 ~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV 163 (566)
T PRK07282 88 AITGI-ADAMSDSVPLLVFTGQVARAGIGKD--AFQEADIVGITMPITKY-NYQIRETADIPRIITEAVHIATTGRPGPV 163 (566)
T ss_pred HHHHH-HHHhhcCCCEEEEecccccccCCCC--CccccChhchhcCCCce-eEEcCCHHHHHHHHHHHHHHHhcCCCCeE
Confidence 66655 4566779999998743322 2322 35555555666665544 33455777777777777764 35899
Q ss_pred EEEcCCCC
Q 003948 619 CFRFPRGN 626 (784)
Q Consensus 619 ~irl~r~~ 626 (784)
+|-+|..-
T Consensus 164 ~l~iP~Dv 171 (566)
T PRK07282 164 VIDLPKDV 171 (566)
T ss_pred EEeCChhh
Confidence 99998753
No 199
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=90.71 E-value=2.8 Score=45.92 Aligned_cols=103 Identities=9% Similarity=0.098 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhc------CCeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEee-CCCC--CC---------------
Q 003948 518 HAVTFAAGLASE------GVKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMD-RAGL--VG--------------- 571 (784)
Q Consensus 518 ~~vg~AaGlA~~------G~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~~-~~G~--~G--------------- 571 (784)
+..++|.|++.. +-..++++. +.+..-+++.+ +.++..++||++++- .... +|
T Consensus 73 ~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l-~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 73 ATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQAL-SGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred ChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHH-HHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 334455555543 334566554 33444455554 678889999998873 2221 21
Q ss_pred -CCCCC--cCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 572 -ADGPT--HCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 572 -~dG~T--Hq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
..|.. .-.+..+.....+|-+....|+++.++...++.|++ .++|.+|..
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~ 204 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHL 204 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00111 112233343345566778999999999999999987 789988754
No 200
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.39 E-value=4.7 Score=48.09 Aligned_cols=116 Identities=13% Similarity=0.079 Sum_probs=77.6
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla 584 (784)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++.........+-..+|......
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGI-ATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVG 120 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 356554 8999999999999975 5444444 4777776666665 5667789999998633222111112366666666
Q ss_pred HhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 585 ~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
+++.+-.+ .....++.++..++..|+.. ..+|+++-+|..
T Consensus 121 l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 121 ISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred hhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 77766554 45556777777777777653 358999999886
No 201
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=90.17 E-value=6 Score=46.99 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=77.1
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~ 585 (784)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++.............+|......+
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~ 118 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGI-ATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGI 118 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCCcccChhhh
Confidence 66665 8999999999999975 6444444 4777766666665 45677899999986322211111223565555667
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
++.+-.+ .....++.++..++..|+.. ..+|++|-+|..
T Consensus 119 ~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 119 TMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred hcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 7765544 34446788888888887763 358999999875
No 202
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.83 E-value=5 Score=43.49 Aligned_cols=148 Identities=10% Similarity=0.106 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcC-CeeEEEec--HhHHH
Q 003948 467 YTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIY--SSFLQ 543 (784)
Q Consensus 467 ~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G-~~P~~~ty--s~Fl~ 543 (784)
...++.++|.++..+.++.+++ .|.|.+..+..+.+ -..++... ..++.+|.|+++.. -++++++. .+++.
T Consensus 18 il~al~~al~~l~~~~~~~ivv-sdiGc~~~~~~~~~---~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ 91 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVV-SGIGCSSNLPEFLN---TYGIHGIH--GRVLPIATGVKWANPKLTVIGYGGDGDGYG 91 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEE-ECCchhhhhhhhcc---CCCccccc--ccHHHHHHHHHHHCCCCcEEEEECChHHHH
Confidence 3455666665554334454444 46665442222211 11222222 45566778877753 35566653 32344
Q ss_pred HHHHHHHHHhhcCCCCEEEEe-eCCC--CCC-CCCCCc--------C---------chhhHhHhccCCCcEEEecCCHHH
Q 003948 544 RGYDQVVHDVDLQKLPVRFAM-DRAG--LVG-ADGPTH--------C---------GAFDVTFMSCLPNMVVMAPSDEAE 602 (784)
Q Consensus 544 ra~dQi~~~~a~~~lpV~~v~-~~~G--~~G-~dG~TH--------q---------~~~dla~lr~iPn~~V~~Psd~~E 602 (784)
-.+..+ ..++..++|+++++ +... .+| ..-++- . ....++.....+.+....+.++.|
T Consensus 92 ig~~eL-~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~ 170 (279)
T PRK11866 92 IGLGHL-PHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH 170 (279)
T ss_pred ccHHHH-HHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH
Confidence 555555 35778899987776 4332 232 111110 0 111222222334445666799999
Q ss_pred HHHHHHHHHHhCCCCeEEEc
Q 003948 603 LMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 603 ~~~~l~~A~~~~~~Pv~irl 622 (784)
+...++.|++ .++|++|-.
T Consensus 171 l~~~l~~Al~-~~Gps~I~v 189 (279)
T PRK11866 171 LKEIIKEAIK-HKGFSFIDV 189 (279)
T ss_pred HHHHHHHHHh-CCCCEEEEE
Confidence 9999999987 688988754
No 203
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.83 E-value=2.3 Score=50.75 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=78.1
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEEe-cHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~t-ys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++. .-.|++++.+|.|.|.. |...+|.+ +.+.+..++--+ ..+...+.||+++...... .+.+ .+|..+..
T Consensus 44 ~~i~-~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 119 (574)
T PRK07979 44 DHVL-VRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGI-ATAYMDSIPLVVLSGQVATSLIGYD--AFQECDMV 119 (574)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHH-HHHhhcCCCEEEEECCCChhccCCC--CCceecHH
Confidence 5555 47899999999999975 76666554 777776666555 4566779999998633322 2322 35555555
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~~ 626 (784)
.+++.+-.+ .....+++++..+++.|+.. ..+|++|.+|...
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 120 GISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred HHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 667765443 44556888888888888763 4589999998753
No 204
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=89.80 E-value=7.6 Score=41.00 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=52.8
Q ss_pred CeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCcC-----------------------chhhHh
Q 003948 531 VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHC-----------------------GAFDVT 584 (784)
Q Consensus 531 ~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~G~dG~THq-----------------------~~~dla 584 (784)
-+|++++. ..|++-.+..+ ..+...++|+++++ +..++ |.-|.+++ ..-|+.
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL-~ta~~~~~pv~~vVlNN~~y-g~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~ 157 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQAL-SGAAERGHDILYICYDNEAY-MNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLP 157 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHH-HHHHHcCCCeEEEEECCccc-ccCCCCCCCCCCCCCEeecCCCCccccccccccCCHH
Confidence 57888874 33444555555 46788899988887 33332 21111111 111222
Q ss_pred -HhccC--CCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 585 -FMSCL--PNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 585 -~lr~i--Pn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
+.+.+ +.+..+...++.|+..+++.+++ .++|++|-.
T Consensus 158 ~iA~a~G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev 197 (235)
T cd03376 158 LIMAAHNIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHI 197 (235)
T ss_pred HHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22222 22334678999999999999987 678988743
No 205
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=89.55 E-value=6.2 Score=46.94 Aligned_cols=116 Identities=17% Similarity=0.116 Sum_probs=76.4
Q ss_pred CCeeeccccHHHHHHHHHHHHhcCCee-EEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASEGVKP-FCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~~P-~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla 584 (784)
=|++. ...|++++.+|.|+|..--+| +|. ++.+.+..++.-+ ..+...+.||+++.........+-..+|......
T Consensus 52 i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 129 (564)
T PRK08155 52 IRHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAI-ADARLDSIPLVCITGQVPASMIGTDAFQEVDTYG 129 (564)
T ss_pred ceEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeccCCcccccCCCccccchhh
Confidence 46777 589999999999999864344 333 4777766666665 4577889999988633222111112355554555
Q ss_pred HhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 585 ~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
+++.+--. .+.-.++.++..++..|++. ..+|++|-+|..
T Consensus 130 ~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 130 ISIPITKH-NYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred hhhccceE-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 66665443 33345788888888877763 258999999865
No 206
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=89.25 E-value=5.1 Score=40.12 Aligned_cols=120 Identities=15% Similarity=0.046 Sum_probs=69.2
Q ss_pred hhHHhCCCCeeeccc-cHHH-HHHHHHHHHhcC-CeeEEEe--cHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCC---
Q 003948 500 YFQKRFPDRCFDVGI-AEQH-AVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV--- 570 (784)
Q Consensus 500 ~f~~~~p~R~~d~GI-aE~~-~vg~AaGlA~~G-~~P~~~t--ys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~--- 570 (784)
.+.-..|.+++..+. .=.+ +++.|.|+++.. -++++.+ -..|+.-..+ + ..+...++|+++++ +..|+.
T Consensus 35 ~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~e-l-~t~~~~~lp~~~iv~NN~~~~~~~ 112 (178)
T cd02014 35 HLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD-L-ITAVKYNLPVIVVVFNNSDLGFIK 112 (178)
T ss_pred hcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHH-H-HHHHHhCCCcEEEEEECCchhHHH
Confidence 344455778886543 2222 444666766653 3456665 3556544433 3 45777899987776 444321
Q ss_pred -----CCCCCCcC--chhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 571 -----GADGPTHC--GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 571 -----G~dG~THq--~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
..+...+. ...|+.-+..--|+..+...++.|+...++.+++ .++|++|-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~-~~~p~liev 170 (178)
T cd02014 113 WEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEALA-ADGPVVIDV 170 (178)
T ss_pred HHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00111111 1124332332247788888999999999999976 578988754
No 207
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=89.21 E-value=6.3 Score=42.91 Aligned_cols=144 Identities=12% Similarity=0.130 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccH---HHHHHHHHHHHhcC-CeeEEEec--HhH
Q 003948 468 TQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAE---QHAVTFAAGLASEG-VKPFCAIY--SSF 541 (784)
Q Consensus 468 ~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE---~~~vg~AaGlA~~G-~~P~~~ty--s~F 541 (784)
..++.++|.++.-..++.+++ .|.|.+. +.| ++++..--- -.++.+|.|+++.. -++++++. .+|
T Consensus 13 ~~~~~~a~~~l~~~p~d~iiv-sdiGc~~-------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f 83 (287)
T TIGR02177 13 LSALQRALAELNLDPEQVVVV-SGIGCSA-------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDL 83 (287)
T ss_pred HHHHHHHHHHhcCCCCCEEEE-ECCCccc-------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHH
Confidence 345666666654333455444 4776543 123 555543221 23556788877763 35666663 445
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEe-eCCC--CCC-CCCCCc--------------CchhhH---hHhccCCCcEEEecCCH
Q 003948 542 LQRGYDQVVHDVDLQKLPVRFAM-DRAG--LVG-ADGPTH--------------CGAFDV---TFMSCLPNMVVMAPSDE 600 (784)
Q Consensus 542 l~ra~dQi~~~~a~~~lpV~~v~-~~~G--~~G-~dG~TH--------------q~~~dl---a~lr~iPn~~V~~Psd~ 600 (784)
+.-....+ ..++..++|+++++ +..+ .++ ..-++- ....++ ++.....-.......++
T Consensus 84 ~~mg~~eL-~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~ 162 (287)
T TIGR02177 84 YGIGGNHF-VAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDV 162 (287)
T ss_pred HhccHHHH-HHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCH
Confidence 43334444 35677899988877 3332 222 111110 000122 22222221222336899
Q ss_pred HHHHHHHHHHHHhCCCCeEEEc
Q 003948 601 AELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 601 ~E~~~~l~~A~~~~~~Pv~irl 622 (784)
+|+..+++.|++ .++|++|-.
T Consensus 163 ~eL~~ai~~Al~-~~GpslIeV 183 (287)
T TIGR02177 163 AHLKEIIKEAIN-HKGYALVDI 183 (287)
T ss_pred HHHHHHHHHHHh-CCCCEEEEE
Confidence 999999999987 688988754
No 208
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.97 E-value=8.9 Score=46.04 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=90.4
Q ss_pred HHHHHHHHhhC--CCEEEEecCCCCCCCh---hhhHHhCCCCeeeccccHHHHHHHHHHHHh-cCCeeEEE-ecHhHHHH
Q 003948 472 AESLIKEAETD--DKIVAIHAAMGGGTGL---NYFQKRFPDRCFDVGIAEQHAVTFAAGLAS-EGVKPFCA-IYSSFLQR 544 (784)
Q Consensus 472 ~~aL~~l~~~d--~~iv~i~aD~ggs~gl---~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~-~G~~P~~~-tys~Fl~r 544 (784)
++.|.+.+++. +.|+.+. |+.-+ +.+.+.-.=|++.+ ..|++++.+|.|.|. .|...+|. ++.+.+..
T Consensus 14 a~~l~~~L~~~GV~~vFGvp----G~~~~~l~dal~~~~~i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 14 AEMVVQALKDQGVEHIFGYP----GGAVLPIYDEIFQQDDIQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred HHHHHHHHHHCCCCEEEEcc----CcchHHHHHHHhhcCCCeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 55666666554 2344432 33322 33322212467776 899999999999996 47555555 47777766
Q ss_pred HHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCe
Q 003948 545 GYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPS 618 (784)
Q Consensus 545 a~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv 618 (784)
++--| ..+...+.||+++...... .+. ..+|......+++.+--+ .+...++.++..++..|+.. ..+|+
T Consensus 89 ~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV 164 (595)
T PRK09107 89 AVTPL-QDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPV 164 (595)
T ss_pred HHHHH-HHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceE
Confidence 66555 4566789999988632222 232 245655555566654332 34556778888888777763 35899
Q ss_pred EEEcCCCC
Q 003948 619 CFRFPRGN 626 (784)
Q Consensus 619 ~irl~r~~ 626 (784)
+|-+|+.-
T Consensus 165 ~l~iP~Dv 172 (595)
T PRK09107 165 VVDIPKDV 172 (595)
T ss_pred EEecCCCh
Confidence 99998753
No 209
>PRK08611 pyruvate oxidase; Provisional
Probab=88.92 E-value=9.1 Score=45.75 Aligned_cols=117 Identities=13% Similarity=-0.008 Sum_probs=75.6
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla 584 (784)
=|++. ...|++++.+|.|+|.. |...+|. |+.+.+..++.-+ ..+...+.||+++..........-..+|.+....
T Consensus 44 i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-a~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~ 121 (576)
T PRK08611 44 IKFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGL-YDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEK 121 (576)
T ss_pred CeEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCcccccCCCCccccCHHH
Confidence 36665 58899999999999975 6444444 3777766666655 4567789999998633322111112355555566
Q ss_pred HhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCCC
Q 003948 585 FMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN 626 (784)
Q Consensus 585 ~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~~ 626 (784)
+++.+--+ .....+++++..++..|+. ...+|++|-+|...
T Consensus 122 l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv 165 (576)
T PRK08611 122 MFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDL 165 (576)
T ss_pred Hhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhh
Confidence 77766443 3455667777776666554 24689999998753
No 210
>PRK07064 hypothetical protein; Provisional
Probab=88.89 E-value=8.8 Score=45.36 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=75.8
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCC-CCCcCchhh
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGAFD 582 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~d-G~THq~~~d 582 (784)
|++.+ ..|++++.+|.|+|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+.+ +..|+....
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~ 120 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGAL-VEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQ 120 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCcccccCCCcccccccCH
Confidence 55554 8899999999999975 6444443 4777766666655 4567789999988632211 2322 234554456
Q ss_pred HhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 583 la~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
..+++.+-.. .+...++.++..++..|+.. ..+|++|-+|..
T Consensus 121 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 121 LTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred HHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 6777765543 44556677777777766652 468999999875
No 211
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=88.72 E-value=4.9 Score=40.20 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=64.6
Q ss_pred hCCCCee-eccccHH-HHHHHHHHHHhcCCeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCC--C--CC-
Q 003948 504 RFPDRCF-DVGIAEQ-HAVTFAAGLASEGVKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV--G--AD- 573 (784)
Q Consensus 504 ~~p~R~~-d~GIaE~-~~vg~AaGlA~~G~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~--G--~d- 573 (784)
..|.|++ +.|..-. ..++.+.|+++.--+|++++. ..|+.-.- .+ ..+...++|+++++ +..++. . ..
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~~-eL-~ta~~~~l~v~ivVlNN~~~g~~~~~~~~ 116 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDLN-GL-LLGKQEPLNLTIVVINNNGGGIFSLLPQA 116 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhHH-HH-HhccccCCCeEEEEEECCCCchheeccCC
Confidence 4467887 5554322 245677777665356777764 44553332 22 34667789987766 444421 1 00
Q ss_pred --CC---CcC---chhhH-hHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEE
Q 003948 574 --GP---THC---GAFDV-TFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621 (784)
Q Consensus 574 --G~---THq---~~~dl-a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~ir 621 (784)
+. ... ...|. .+.++ -|+..+...++.|+...++.+++ .++|.+|-
T Consensus 117 ~~~~~~~~~~~~~~~~d~~~lA~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~lIe 171 (175)
T cd02009 117 SFEDEFERLFGTPQGLDFEHLAKA-YGLEYRRVSSLDELEQALESALA-QDGPHVIE 171 (175)
T ss_pred cccchhhhhhcCCCCCCHHHHHHH-cCCCeeeCCCHHHHHHHHHHHHh-CCCCEEEE
Confidence 00 000 01122 22222 25667778899999999999986 67898874
No 212
>PRK05858 hypothetical protein; Provisional
Probab=88.65 E-value=3 Score=49.33 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=77.3
Q ss_pred CCCeeeccccHHHHHHHHHHHHhcCCee-EEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhH
Q 003948 506 PDRCFDVGIAEQHAVTFAAGLASEGVKP-FCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDV 583 (784)
Q Consensus 506 p~R~~d~GIaE~~~vg~AaGlA~~G~~P-~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dl 583 (784)
.=|++.+ ..|++++.+|.|.|...-+| +|. ++.+-+..++.-+ ..+...+.||+++.......-.+...+|.....
T Consensus 42 ~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~ 119 (542)
T PRK05858 42 GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAM-AAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHV 119 (542)
T ss_pred CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCCCCCcccchh
Confidence 3466665 89999999999999874344 333 3666665666555 567788999998863322211112335666566
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
.+++.+-.. .....++.++...+..|+.. ..+||+|-+|+.
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 120 PFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred hhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 677765543 45566778887777777653 357999999875
No 213
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.64 E-value=9.5 Score=45.68 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=75.3
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~d 582 (784)
=|++.+ -.|++++.+|-|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+.+ .+|....
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 135 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGI-ATAYMDSIPMVVISGQVPTAAIGQD--AFQECDT 135 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--CcccccH
Confidence 467765 8999999999999986 6444444 4777776666665 5677789999998633322 2322 3555555
Q ss_pred HhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 583 la~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
..+++.+-.+ .....++.++..++..|+.. ..+|++|-+|..
T Consensus 136 ~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 136 VGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 5566665543 34455666666666666552 358999999886
No 214
>PRK08322 acetolactate synthase; Reviewed
Probab=88.62 E-value=9 Score=45.33 Aligned_cols=113 Identities=14% Similarity=0.066 Sum_probs=76.0
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++.+ ..|++++.+|.|.|.. |...+|. +..+.+..++.-+ ..+...+.|++++...... .+.+ .||.....
T Consensus 40 ~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i-~~A~~~~~Pll~i~g~~~~~~~~~~--~~q~~d~~ 115 (547)
T PRK08322 40 KLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGV-AYAQLGGMPMVAITGQKPIKRSKQG--SFQIVDVV 115 (547)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHH-HHHhhcCCCEEEEeccccccccCCC--ccccccHH
Confidence 55554 8999999999999986 5444444 4667666666655 5677889999988632221 2221 35555555
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
.+++.+-.+ .+...++.++..++..|+.. ..+|++|-+|..
T Consensus 116 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 116 AMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 677765442 56667788877777777663 357999999875
No 215
>PRK06163 hypothetical protein; Provisional
Probab=88.52 E-value=16 Score=37.67 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=61.6
Q ss_pred hCCCCeeeccccHHHHHHHHHHHHhcC-CeeEEEec--HhHHHHHHHHHHHHhh-cCCCCEEEEe-eCCCC--CCCCCCC
Q 003948 504 RFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIY--SSFLQRGYDQVVHDVD-LQKLPVRFAM-DRAGL--VGADGPT 576 (784)
Q Consensus 504 ~~p~R~~d~GIaE~~~vg~AaGlA~~G-~~P~~~ty--s~Fl~ra~dQi~~~~a-~~~lpV~~v~-~~~G~--~G~dG~T 576 (784)
..|.+++..| +=-..+.+|.|+++.. -++++++. ..|+.-.-| + ..++ +.++|+++++ +..++ .+.....
T Consensus 48 ~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~GDG~f~m~~~e-L-~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~ 124 (202)
T PRK06163 48 QRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEGDGSLLMQLGA-L-GTIAALAPKNLTIIVMDNGVYQITGGQPTL 124 (202)
T ss_pred cCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEcchHHHHHHHH-H-HHHHHhcCCCeEEEEEcCCchhhcCCccCC
Confidence 3567777432 1112233566766653 45666664 445444322 2 2333 4467877666 44443 1211001
Q ss_pred cCchhhHhHhccCCCcE-EEecCCHHHHHHHHHHHHHhCCCCeEEEcC
Q 003948 577 HCGAFDVTFMSCLPNMV-VMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 577 Hq~~~dla~lr~iPn~~-V~~Psd~~E~~~~l~~A~~~~~~Pv~irl~ 623 (784)
+....|..-+..--|+. -+...+.+|+..+++.+++ .++|++|-..
T Consensus 125 ~~~~~Df~~lA~a~G~~~~~~v~~~~el~~al~~a~~-~~~p~lIeV~ 171 (202)
T PRK06163 125 TSQTVDVVAIARGAGLENSHWAADEAHFEALVDQALS-GPGPSFIAVR 171 (202)
T ss_pred CCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 11112333333223564 5677899999999999986 5889887553
No 216
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.25 E-value=9.3 Score=45.47 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=78.1
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~ 585 (784)
|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++..........-..+|......+
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 120 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGL-ATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGI 120 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhhh
Confidence 55554 8999999999999975 6554544 4777766666655 45677899999886332221111123566656567
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
++.+-.+ .....+++++..+++.|+.. ..+|++|-+|..
T Consensus 121 ~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 121 SRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred hhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 7765443 45668899999988888773 336999999865
No 217
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.19 E-value=7.6 Score=46.33 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=76.2
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~d 582 (784)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..+..-+ ..+...+.||+++...... .+.+ .+|....
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 118 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGI-ATAYMDSIPMVVLSGQVPSNLIGND--AFQECDM 118 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--CCcccch
Confidence 467765 8999999999999975 6555544 4777766666554 4566779999988633222 1222 3555555
Q ss_pred HhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 583 la~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
..+++.+-.+ .....+++++...+..|+.. ..+|++|-+|..
T Consensus 119 ~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 119 IGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred hHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 5666654433 44555788888888877762 357999999875
No 218
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=88.18 E-value=2.7 Score=49.82 Aligned_cols=116 Identities=9% Similarity=-0.071 Sum_probs=74.1
Q ss_pred CCeeeccccHHHHHHHHHHHHhcCCeeEEE--ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCA--IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~--tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla 584 (784)
=|++. ...|++++.+|.|.|..--+|-++ +..+-+..++.-+ ..+...+.||+++............++|..+...
T Consensus 40 i~~v~-~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 117 (549)
T PRK06457 40 VKYVQ-VRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGL-YDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTK 117 (549)
T ss_pred CeEEE-eCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 34444 489999999999999864444333 4677666666555 4667789999988632221111122356665666
Q ss_pred HhccCCCcEEEecCCHHHHHHHHHHHHHh---CCCCeEEEcCCC
Q 003948 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG 625 (784)
Q Consensus 585 ~lr~iPn~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl~r~ 625 (784)
+++.+--. .....+++++..++..|+.. ..+|++|-+|..
T Consensus 118 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 118 LFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred hhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 77765443 45556666766666666552 368999999865
No 219
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=88.05 E-value=11 Score=45.07 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=69.9
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++.+ -.|++++.+|.|.|.. |.-.+|. +..+....+..-+ ..+...+.||+++...... .+. ..||.....
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~ 118 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQ 118 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHH-HHHhhcCCCEEEEecCCccccCCC--CCccccChh
Confidence 55443 6999999999999986 5434443 3566655555554 4567789999988632221 232 236666666
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~ 625 (784)
.+++.+--. .....+++++...+..|+. ...+|++|-+|..
T Consensus 119 ~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~D 162 (574)
T PRK09124 119 ELFRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGD 162 (574)
T ss_pred hhcccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 777755433 2335566665554444443 2458999999865
No 220
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=87.59 E-value=18 Score=38.28 Aligned_cols=117 Identities=12% Similarity=0.136 Sum_probs=63.0
Q ss_pred CCCCeeeccccHHHHHHHHHHHHh----c------CCeeEEEecHh--HHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--
Q 003948 505 FPDRCFDVGIAEQHAVTFAAGLAS----E------GVKPFCAIYSS--FLQRGYDQVVHDVDLQKLPVRFAM-DRAGL-- 569 (784)
Q Consensus 505 ~p~R~~d~GIaE~~~vg~AaGlA~----~------G~~P~~~tys~--Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~-- 569 (784)
+|.++++..+.-.+.+|.+..+|. . --++++++..+ |+...+-.+. .+...++|+++++ +..++
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~-ta~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALS-HSLFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHHH-HHHHcCCCeEEEEECCccccC
Confidence 456667766545566665444443 2 13567776443 4333333332 3455789988877 33332
Q ss_pred CC-CCCC----------CcCc----hhhHh-Hhcc--CCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 570 VG-ADGP----------THCG----AFDVT-FMSC--LPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 570 ~G-~dG~----------THq~----~~dla-~lr~--iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
.+ .... +.+. ..|+. +.++ ++.+....+.++.|+..++++|+.+.++|++|-.
T Consensus 130 ~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v 200 (237)
T cd02018 130 TGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHA 200 (237)
T ss_pred CCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22 1110 0000 01222 2222 3333334599999999999999863578988754
No 221
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=87.54 E-value=4.8 Score=40.54 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=66.4
Q ss_pred hCCCCeeeccc-cH-HHHHHHHHHHHhcC-CeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCC-------
Q 003948 504 RFPDRCFDVGI-AE-QHAVTFAAGLASEG-VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV------- 570 (784)
Q Consensus 504 ~~p~R~~d~GI-aE-~~~vg~AaGlA~~G-~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~------- 570 (784)
..|.+|+..+- .= -..+..|.|+++.. -++++.+. ..|+...-| + ..++..++|+++++ +..++.
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~~e-L-~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNIQE-L-ATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccHHH-H-HHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 45788886532 21 12555777777653 35566553 446543333 3 45778899987766 444421
Q ss_pred ---CCC-C-CCcCchhhHh-HhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 571 ---GAD-G-PTHCGAFDVT-FMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 571 ---G~d-G-~THq~~~dla-~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
+.. . .......|.. +.+++ |+..+...++.|+...++.+++ .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 171 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDV 171 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 000 0 1111112333 33333 6667777889999999999976 688988754
No 222
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=87.47 E-value=11 Score=45.45 Aligned_cols=116 Identities=19% Similarity=0.134 Sum_probs=77.3
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla 584 (784)
=+++.+ ..|++++.+|.|+|.. |...+|. +..+.+..++.-+ ..+...+.||+++.........+...+|......
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~ 147 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPI-ADANMDSVPVVAITGQVGRGLIGTDAFQEADIVG 147 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcCcccchhh
Confidence 356664 8999999999999975 6554444 4777666666555 5677789999998733322111112355555556
Q ss_pred HhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 585 ~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
+++.+-.+ .+...++.++..++..|+.. ..+|++|-+|..
T Consensus 148 l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 148 ITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred hhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 66665443 34567888888888888763 357999999875
No 223
>PRK11269 glyoxylate carboligase; Provisional
Probab=87.46 E-value=11 Score=45.10 Aligned_cols=116 Identities=10% Similarity=0.035 Sum_probs=76.5
Q ss_pred CCeeeccccHHHHHHHHHHHHhc--CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhH
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE--GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDV 583 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~--G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dl 583 (784)
=|++.+ ..|++++.+|.|.|.. |...+|. |+.+.+..++--+ ..+...+.||+++.........+-..+|.+...
T Consensus 43 i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~ 120 (591)
T PRK11269 43 IRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIE 120 (591)
T ss_pred CcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccChh
Confidence 467776 8999999999999975 4443333 5777665565554 456778999998863322211111236665566
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
.+++.+--+ .....++.++..+++.|+.. ..+|++|-+|..
T Consensus 121 ~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 121 SIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred hHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 677764433 44557788888888877763 347999999875
No 224
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=87.21 E-value=9.7 Score=38.18 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=67.4
Q ss_pred hCCCCeeecccc--HHHHHHHHHHHHhc-CCeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC----
Q 003948 504 RFPDRCFDVGIA--EQHAVTFAAGLASE-GVKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG---- 571 (784)
Q Consensus 504 ~~p~R~~d~GIa--E~~~vg~AaGlA~~-G~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~--~G---- 571 (784)
..|.|++..+-. =-..+..|.|+++. .-+|++++. ..|+...-| +..+...++|+++++ +..|+ ..
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~~e--L~ta~~~~l~vi~vV~NN~~~g~~~~~~~ 113 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNSQE--LETAVRLKIPLVVLIWNDNGYGLIKWKQE 113 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHHHH--HHHHHHHCCCeEEEEEECCcchHHHHHHH
Confidence 457888865321 12234467777764 346677764 445533322 344677799988876 44443 11
Q ss_pred -CCC-CCcC--chhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEcC
Q 003948 572 -ADG-PTHC--GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 572 -~dG-~THq--~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl~ 623 (784)
..+ ..+. ...|..-+..--|+.-+...+++|+...++++++ .++|.+|-..
T Consensus 114 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 114 KEYGRDSGVDFGNPDFVKYAESFGAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 001 0111 1123332222236777888999999999999987 6789887543
No 225
>PLN02470 acetolactate synthase
Probab=87.04 E-value=11 Score=45.02 Aligned_cols=114 Identities=16% Similarity=0.124 Sum_probs=77.1
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~d 582 (784)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++...... .+. ..+|....
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gi-a~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 127 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPI 127 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCcEEEEecCCChhhcCC--CcCcccch
Confidence 467766 8899999999999975 6444443 4778776666665 4567789999998632221 122 22555555
Q ss_pred HhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 583 la~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
..+++.+-.+ .+...+++++..+++.|+.. ..+||+|-+|..
T Consensus 128 ~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 128 VEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred hhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 5666654332 33456888888888888763 358999999875
No 226
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=87.01 E-value=4.2 Score=48.59 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=74.2
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla 584 (784)
=|++.+ -.|++++.+|-|.|.. |.-.+|. ++.+.+..++.-+ ..+-..+.||+++.........+..++|.+....
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~ 116 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGL-YDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENP 116 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCcceechhh
Confidence 356654 7899999999999975 5444444 4777776666655 4566789999998633332222344577666666
Q ss_pred HhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCCC
Q 003948 585 FMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN 626 (784)
Q Consensus 585 ~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~~ 626 (784)
+++.+-.+ .....++.++...+..|+. ...+|++|-+|...
T Consensus 117 ~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 117 IYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred hhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 77754432 2344445555444444433 26789999998753
No 227
>PLN02573 pyruvate decarboxylase
Probab=86.67 E-value=11 Score=44.97 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=69.4
Q ss_pred CeeeccccHHHHHHHHHHHHh-cCCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCch---
Q 003948 508 RCFDVGIAEQHAVTFAAGLAS-EGVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA--- 580 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~-~G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~--- 580 (784)
|++. ...|++++.+|-|.|. .| .++|. ++.+.+..+..-+ ..+...+.||+++...... .+.++..|+..
T Consensus 56 ~~i~-~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 132 (578)
T PLN02573 56 NLIG-CCNELNAGYAADGYARARG-VGACVVTFTVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 132 (578)
T ss_pred eEEE-eCCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHHHHHH-HHHHHhCCCEEEEECCCChhhhhcCceeeeecCCC
Confidence 4444 4789999999999997 48 66665 4777665565554 4556679999998633221 24444455432
Q ss_pred ---hhHhHhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCCC
Q 003948 581 ---FDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN 626 (784)
Q Consensus 581 ---~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~~ 626 (784)
.+..+++.+-.+ .....+++++..++..|+. ...+|++|-+|+.-
T Consensus 133 ~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 133 DFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALKESKPVYISVSCNL 183 (578)
T ss_pred ChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence 223455543322 2334445555544444443 24689999998763
No 228
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=86.48 E-value=16 Score=43.59 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=82.3
Q ss_pred hhhHHhCCCCeeeccccHHHHHHHHHHHHhc-CCeeEEEe-cHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCC
Q 003948 499 NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADG 574 (784)
Q Consensus 499 ~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~t-ys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG 574 (784)
+.+.+. .=|++.+ .-||+++.+|.|.|.. |.-.+|.. ..+.+..+..-+ .++.+-+.|++++...... .|.
T Consensus 33 dal~~~-~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgl-a~A~~d~~Pll~itGqv~~~~~g~-- 107 (550)
T COG0028 33 DALYDS-GIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGL-ADAYMDSVPLLAITGQVPTSLIGT-- 107 (550)
T ss_pred HHHHhC-CCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCccccccCc--
Confidence 444444 4577766 8899999999999985 66555554 667666665554 5677789999888632221 232
Q ss_pred CCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 575 PTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 575 ~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
-.+|......+++.+-.. .+...+++|+-..++.|++. ..+|++|-+|+.
T Consensus 108 ~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D 161 (550)
T COG0028 108 DAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKD 161 (550)
T ss_pred chhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence 245555555566643322 57778889999999888873 347999999875
No 229
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.42 E-value=4.8 Score=48.08 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=77.8
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~d 582 (784)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|....
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~ 128 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGL-ADAYMDSIPLVVITGQVATPLIGKD--GFQEADV 128 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCcCEEEEecCCCcccccCC--CCcccch
Confidence 466664 7999999999999975 6444444 4777776666655 4566779999988632222 1222 3555555
Q ss_pred HhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCCC
Q 003948 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (784)
Q Consensus 583 la~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~~ 626 (784)
..+++.+-.+ .+...+++++..+++.|+.. ..+|++|-+|..-
T Consensus 129 ~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 129 VGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred hhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 5666665443 44567888888888888763 3589999998753
No 230
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=86.40 E-value=5.7 Score=47.60 Aligned_cols=116 Identities=11% Similarity=0.045 Sum_probs=75.4
Q ss_pred CeeeccccHHHHHHHHHHHHhc--CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHh
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE--GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~--G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla 584 (784)
|++. .-.|++++.+|-|.|.. |...+|. ++.+.+..++--+ ..+...+.||+++.............+|......
T Consensus 43 ~~V~-~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~ 120 (588)
T TIGR01504 43 RHIL-ARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIAA 120 (588)
T ss_pred cEEe-eCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccCHHH
Confidence 5555 36799999999999975 4344443 4677666666554 4566789999998633222111122356555556
Q ss_pred HhccCCCcEEEecCCHHHHHHHHHHHHH----hCCCCeEEEcCCCC
Q 003948 585 FMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGN 626 (784)
Q Consensus 585 ~lr~iPn~~V~~Psd~~E~~~~l~~A~~----~~~~Pv~irl~r~~ 626 (784)
+++.+--+ .+...++.++..+++.|+. ...+|++|-+|+.-
T Consensus 121 ~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 121 IAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred HhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 77765443 4445678888888888876 23479999998863
No 231
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=86.33 E-value=4.8 Score=47.53 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=73.7
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEEe-cHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~t-ys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~d 582 (784)
=|++ ....|++++.+|.|.|.. |.-.+|.+ ..+.+..++.-+ ..+...+.||+++...... .+. ++.++....
T Consensus 49 i~~i-~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~-~~~~~~~d~ 125 (530)
T PRK07092 49 FRYV-LGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNL-FTAFKNHTPLVITAGQQARSILPF-EPFLAAVQA 125 (530)
T ss_pred CCEE-EEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHH-HHHhhcCCCEEEEecCCcccccCc-cchhcccCH
Confidence 3666 458999999999999985 54444433 455555555554 4567789999987643322 122 232333344
Q ss_pred HhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 583 la~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
..+++.+-.+.. ...++.++..++..|+.. ..+|++|-+|..
T Consensus 126 ~~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 126 AELPKPYVKWSI-EPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred HHhhccccccee-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 567777665533 346678877777777763 257999998865
No 232
>PRK08617 acetolactate synthase; Reviewed
Probab=86.03 E-value=4.3 Score=48.15 Aligned_cols=114 Identities=14% Similarity=0.046 Sum_probs=77.2
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~d 582 (784)
=|++.+ ..|++++.+|.|.|.. |.-.+|. |+.+.+..++.-+ ..+...+.||+++...... .+. ..||.+..
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl-~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~ 118 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGL-VTATAEGDPVVAIGGQVKRADRLK--RTHQSMDN 118 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHH-HHHhhcCCCEEEEecCCcccccCC--CCccccch
Confidence 456665 8999999999999986 5444444 4677666666555 4567789999988632221 222 24777766
Q ss_pred HhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 583 la~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
..+++.+--+ .+...++.++..++..|+.. ..+|++|-+|..
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 119 VALFRPITKY-SAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred hhhhhhhcce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 6777776543 45556777777777777663 357999999865
No 233
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=86.02 E-value=14 Score=44.15 Aligned_cols=114 Identities=16% Similarity=0.057 Sum_probs=73.4
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEEe-cHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~t-ys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~d 582 (784)
=|++.+ -.|++++.+|.|.|.. |.-.+|.+ ..+.+..++.-+ ..+...+.||+++...... .+. | .+|...+
T Consensus 42 i~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~-~-~~Qe~d~ 117 (578)
T PRK06546 42 IEWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGL-YDAHRSGAPVLAIASHIPSAQIGS-G-FFQETHP 117 (578)
T ss_pred CeEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCC-C-CccccCh
Confidence 346654 6899999999999987 54444443 566665665554 4667789999988632221 122 2 3555555
Q ss_pred HhHhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCC
Q 003948 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (784)
Q Consensus 583 la~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~ 625 (784)
..+++.+-.+ .+...+++++..++..|+. ...+|++|-+|..
T Consensus 118 ~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 118 DRLFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred hhhcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 5666654332 4566677777766666655 3468999999865
No 234
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=85.97 E-value=4.8 Score=47.98 Aligned_cols=113 Identities=18% Similarity=0.110 Sum_probs=75.4
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++. ...|++++.+|.|+|.. |.-.+|. ++.+.+..++.-| ..+-..+.||+++...... .+.+ .+|.....
T Consensus 45 ~~i~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 120 (572)
T PRK06456 45 RHVL-MRHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGL-ITAYWDSSPVIAITGQVPRSVMGKM--AFQEADAM 120 (572)
T ss_pred eEEE-eCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHH-HHHHhhCCCEEEEecCCCccccCCC--Cccccchh
Confidence 4554 37899999999999975 6544444 4777776666655 5667789999998633221 2332 24544445
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHH----hCCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~----~~~~Pv~irl~r~ 625 (784)
.+++.+-.+ .+...+++++..++..|+. ...+|++|-+|..
T Consensus 121 ~i~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 121 GVFENVTKY-VIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred hhhhcccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 667765544 3444677888777777765 2458999999865
No 235
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=85.86 E-value=13 Score=40.39 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhC-CCCeeeccccHHHHHHHHHHHHhc-CCeeEEEec--HhHHHHH
Q 003948 470 YFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASE-GVKPFCAIY--SSFLQRG 545 (784)
Q Consensus 470 af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~ty--s~Fl~ra 545 (784)
.+.++|.++....++++++ .|.|-+. .+..-+ ++++. +.. ..++.+|.|+++. --++++++. .+|+.-.
T Consensus 30 ~v~~al~e~~~~~~d~ivv-sdiGc~~---~~~~~~~~~~~~-~~~--G~alPaAiGaklA~Pdr~VV~i~GDG~f~~~g 102 (277)
T PRK09628 30 SIIRAIDKLGWNMDDVCVV-SGIGCSG---RFSSYVNCNTVH-TTH--GRAVAYATGIKLANPDKHVIVVSGDGDGLAIG 102 (277)
T ss_pred HHHHHHHHhcCCCCCEEEE-eCcCHHH---HhhccCCCCcee-ecc--ccHHHHHHHHHHHCCCCeEEEEECchHHHHhh
Confidence 3445565553233455444 4666432 111122 23333 222 2567778888875 235555553 4454322
Q ss_pred HHHHHHHhhcCCCCEEEEe-eCCC--CCC-CCCCC-----------c---CchhhHhHhccCCCcEE---EecCCHHHHH
Q 003948 546 YDQVVHDVDLQKLPVRFAM-DRAG--LVG-ADGPT-----------H---CGAFDVTFMSCLPNMVV---MAPSDEAELM 604 (784)
Q Consensus 546 ~dQi~~~~a~~~lpV~~v~-~~~G--~~G-~dG~T-----------H---q~~~dla~lr~iPn~~V---~~Psd~~E~~ 604 (784)
.|-...++..++|+++++ +..+ .++ ..-++ + ....|+.-++.--|..- ....++.|+.
T Consensus 103 -~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~ 181 (277)
T PRK09628 103 -GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLE 181 (277)
T ss_pred -HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHH
Confidence 332344778899988887 3332 222 00000 0 01122222222124432 5789999999
Q ss_pred HHHHHHHHhCCCCeEEEc
Q 003948 605 HMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 605 ~~l~~A~~~~~~Pv~irl 622 (784)
.+++.|++ .++|++|-.
T Consensus 182 ~al~~Al~-~~Gp~lIeV 198 (277)
T PRK09628 182 KLLVKGFS-HKGFSFFDV 198 (277)
T ss_pred HHHHHHHh-CCCCEEEEE
Confidence 99999987 688988854
No 236
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=85.84 E-value=6.2 Score=47.53 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=76.1
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla 584 (784)
=|++.+ -.|+.++.+|.|.|.. |...+|. +..+.+..++.-+ .++..-+.||+++.............+|......
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~ 138 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGI-ATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFG 138 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCcccccHHH
Confidence 367776 8999999999999975 6444444 3677766666554 5677889999988633222111112345444555
Q ss_pred HhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 585 ~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
+++.+-.+ .....+++++..++..|++. ..+|++|-+|..
T Consensus 139 ~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 139 ITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred Hhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 66654322 34466777888777777763 348999999874
No 237
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=85.84 E-value=5.3 Score=47.71 Aligned_cols=116 Identities=11% Similarity=0.045 Sum_probs=74.8
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla 584 (784)
=|++.+ ..|++++.+|.|.|.. |.-.+|. +..+.+..++.-| ..+...+.||+++.........+...+|......
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~ 127 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPL-AEALKASVPIVALVQDVNRDQTDRNAFQELDHIA 127 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhh
Confidence 466665 6999999999999985 5433333 3566665565555 4567789999988633222111223466666666
Q ss_pred HhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 585 ~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
+++.+--+ .....+++++...+..|+.. ..+|++|-+|..
T Consensus 128 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 128 LFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred hhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 77766543 34556667777766666652 357999999865
No 238
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=85.77 E-value=4.6 Score=38.78 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEE-cCCcccchhhHHHHHHHhhcCCCEEEEEECCC
Q 003948 259 ISAGLGMAVARDILGKNNNVISVI-GDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (784)
Q Consensus 259 ls~AvG~AlA~~~~g~~~~Vv~vi-GDGal~eG~~~EAln~A~~~~~nlivIv~dN~ 314 (784)
..+|.|++.+ +. ..++++. |-|..+ ..+++..|...+.|+++|..+.+
T Consensus 48 ~~~A~G~a~~----~~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~ 96 (154)
T cd06586 48 AGAAAGYARA----GG-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARG 96 (154)
T ss_pred HHHHHHHHHh----hC-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCC
Confidence 4455555543 33 3333434 888763 67888888888899999997665
No 239
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=85.73 E-value=5.1 Score=47.48 Aligned_cols=113 Identities=19% Similarity=0.137 Sum_probs=76.5
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+.+ .+|.....
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~~d~~ 115 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGL-ADALLDSVPVVAITGQVSSPLIGTD--AFQEIDVL 115 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--CCcccchh
Confidence 55554 8999999999999985 6444444 4777766666555 4567789999998643322 2322 35655555
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
.+++.+-.... ...++.++..++..|+.. ..+|++|-+|..
T Consensus 116 ~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 116 GLSLACTKHSF-LVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred ccccCceeeEE-EECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 67776655433 334788888888877763 358999999875
No 240
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=85.63 E-value=11 Score=38.17 Aligned_cols=142 Identities=18% Similarity=0.233 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhH-HhCCCCeeeccccHHHHHHHHHHHHhcCCeeEEEec--HhHHHHH
Q 003948 469 QYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQ-KRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIY--SSFLQRG 545 (784)
Q Consensus 469 ~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~-~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~ty--s~Fl~ra 545 (784)
+++.++|.+.+. +.+++. |.|... ...+. ...|.+++..|--=. .+..|.|+++.--+|++++. ..|+.-.
T Consensus 2 ~~~~~~l~~~l~--d~iiv~--d~G~~~-~~~~~~~~~~~~~~~~gsmG~-~lpaAiGa~la~~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE--DELVVS--NIGVPS-KELYAIRDRPLNFYMLGSMGL-ASSIGLGLALATDRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC--CCEEEe--cCCHhH-HHHHhhhcCCCCeeecccccc-HHHHHHHHHHcCCCcEEEEEcchHHHhhh
Confidence 345555666553 334433 444322 12222 135778876432111 23467777665356677764 4454332
Q ss_pred HHHHHHHhhcCC-CCEEEEe-eCCCCCCCCC--CCcC-chhhHh-HhccCCCcEEEe-cCCHHHHHHHHHHHHHhCCCCe
Q 003948 546 YDQVVHDVDLQK-LPVRFAM-DRAGLVGADG--PTHC-GAFDVT-FMSCLPNMVVMA-PSDEAELMHMVATAAVIDDRPS 618 (784)
Q Consensus 546 ~dQi~~~~a~~~-lpV~~v~-~~~G~~G~dG--~THq-~~~dla-~lr~iPn~~V~~-Psd~~E~~~~l~~A~~~~~~Pv 618 (784)
.. +..++..+ +|+++++ +..|+ |.-+ ++.. ...|.. +.++ -|+.-.. ..+++|+...++ +++ .++|+
T Consensus 76 -~e-l~ta~~~~~~pv~~vV~NN~~y-g~~~~q~~~~~~~~d~~~lA~a-~G~~~~~~v~~~~~l~~al~-a~~-~~~p~ 149 (181)
T TIGR03846 76 -GV-LPTIAAESPKNLILVILDNGAY-GSTGNQPTPASRRTDLELVAKA-AGIRNVEKVADEEELRDALK-ALA-MKGPT 149 (181)
T ss_pred -hH-HHHHHHhCCCCeEEEEEeCCcc-ccccCcCCCCCCCCCHHHHHHH-CCCCeEEEeCCHHHHHHHHH-HHc-CCCCE
Confidence 22 34456667 5987776 44443 2111 1111 112222 2333 2555555 788999999997 765 67898
Q ss_pred EEEc
Q 003948 619 CFRF 622 (784)
Q Consensus 619 ~irl 622 (784)
+|-.
T Consensus 150 li~v 153 (181)
T TIGR03846 150 FIHV 153 (181)
T ss_pred EEEE
Confidence 8755
No 241
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=85.41 E-value=5.6 Score=47.59 Aligned_cols=115 Identities=13% Similarity=0.043 Sum_probs=75.9
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~ 585 (784)
|++.+ ..|++++.+|.|.|.. |.-.++. ++.+.+..++.-+ ..+...+.||+++.............+|......+
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l 117 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGI-ATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGI 117 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCCccccHhhH
Confidence 56665 7999999999999975 6444433 4777766666655 56777899999886322221111223565556667
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
++.+-.. .+.-.+++++...+..|+.. ..+|++|-+|..
T Consensus 118 ~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 118 FMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred Hhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 7765543 33446677777777777763 357999999875
No 242
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.39 E-value=5.9 Score=47.24 Aligned_cols=115 Identities=12% Similarity=0.053 Sum_probs=75.9
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~ 585 (784)
|++.+ ..|++++.+|.|.|.. |...+|. +..+.+..++.-+ ..+...+.||+++..........-..+|......+
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i-~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l 121 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGI-ATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccchhhh
Confidence 56665 8999999999999986 5444433 4677666666555 45677899999886322221111123555555566
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
++.+-.. .....++.++..++..|+.. ..+|++|-+|..
T Consensus 122 ~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 122 SRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred hhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 6654432 45566778777777777762 358999999875
No 243
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=85.24 E-value=8.6 Score=46.15 Aligned_cols=146 Identities=13% Similarity=0.105 Sum_probs=86.8
Q ss_pred HHHHHHHHhhC--CCEEEEecCCCCCCCh---hhhHHhCC-CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHH
Q 003948 472 AESLIKEAETD--DKIVAIHAAMGGGTGL---NYFQKRFP-DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQ 543 (784)
Q Consensus 472 ~~aL~~l~~~d--~~iv~i~aD~ggs~gl---~~f~~~~p-~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ 543 (784)
++.|.+.+++. ..|+.+. |++.+ +.+.+..+ =|++.+ -.|++++.+|-|.|.. |...+|. ++.+.+.
T Consensus 6 a~~l~~~L~~~GV~~vFGvp----G~~~~~l~dal~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 80 (597)
T PRK08273 6 ADFILERLREWGVRRVFGYP----GDGINGLLGALGRADDKPEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAI 80 (597)
T ss_pred HHHHHHHHHHCCCCEEEEeC----CCchHHHHHHHHhccCCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 45555555554 3455543 23322 34433222 356654 8999999999999975 6544444 4777776
Q ss_pred HHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhHhHhccCC-CcEEEecCCHHHHHHHHHHHHH---hCCCC
Q 003948 544 RGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLP-NMVVMAPSDEAELMHMVATAAV---IDDRP 617 (784)
Q Consensus 544 ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dla~lr~iP-n~~V~~Psd~~E~~~~l~~A~~---~~~~P 617 (784)
.++.-+ .++...+.||+++...... .+.+ .+|......+++.+- -. .....++.++...+..|+. ...+|
T Consensus 81 n~~~gi-~~A~~d~vPvl~I~G~~~~~~~~~~--~~q~~d~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gP 156 (597)
T PRK08273 81 HLLNGL-YDAKLDHVPVVAIVGQQARAALGGH--YQQEVDLQSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTV 156 (597)
T ss_pred HHHHHH-HHHHhcCCCEEEEecCCchhhcCCC--CCCccCHHHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCC
Confidence 666665 5667789999988633221 2332 345444445666543 11 3455566666666555554 24589
Q ss_pred eEEEcCCCC
Q 003948 618 SCFRFPRGN 626 (784)
Q Consensus 618 v~irl~r~~ 626 (784)
++|-+|...
T Consensus 157 V~i~iP~Dv 165 (597)
T PRK08273 157 TAVILPNDV 165 (597)
T ss_pred EEEEeCcch
Confidence 999998753
No 244
>PRK08266 hypothetical protein; Provisional
Probab=84.50 E-value=6.2 Score=46.67 Aligned_cols=116 Identities=18% Similarity=0.140 Sum_probs=75.6
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCC-CCCcCchh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGAF 581 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~d-G~THq~~~ 581 (784)
=|++.+ ..|++++.+|.|+|.. |...+|. ++.+.+..++.-+ ..+...+.|++++...... .+.+ +.+|+...
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 121 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAAL-LTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHHhhCCCEEEEecCCChhhccCCCCcceeccc
Confidence 456655 8999999999999986 5433433 4777766666665 5677889999988632221 2322 23444345
Q ss_pred hHhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 582 DVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 582 dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
...+++.+-.+ .....+++++..+++.|+.. ..+|++|-+|..
T Consensus 122 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 122 QLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred HhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 56677766543 44555667777777666652 468999999864
No 245
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=84.37 E-value=21 Score=39.09 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhc----CC-eeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC-CCCC----------C
Q 003948 518 HAVTFAAGLASE----GV-KPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGP----------T 576 (784)
Q Consensus 518 ~~vg~AaGlA~~----G~-~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~--~G-~dG~----------T 576 (784)
+++++|.|++.. +. ++++++- +.|..-++..+ ..+...+.++++++ |...+ +| ..-+ +
T Consensus 73 ~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L-~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~ts 151 (299)
T PRK11865 73 NAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSL-SGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTS 151 (299)
T ss_pred chHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHH-HHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccC
Confidence 456667776654 32 3455553 45666666665 45677788888776 33222 22 1111 0
Q ss_pred ------------cCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 577 ------------HCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 577 ------------Hq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
.-++..++.....|-+....|+++.|+...++.|++ .++|++|..
T Consensus 152 p~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v 208 (299)
T PRK11865 152 PAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQV 208 (299)
T ss_pred CCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 112233333345566778899999999999999987 689988854
No 246
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=83.55 E-value=13 Score=37.32 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=56.7
Q ss_pred CCCCeeeccccHHHHHHHHHHHHhcCCeeEEEecHh--HHHHHHHHHHHHhhcCC-CCEEEE-eeCCCCCCCCCCCcCc-
Q 003948 505 FPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSS--FLQRGYDQVVHDVDLQK-LPVRFA-MDRAGLVGADGPTHCG- 579 (784)
Q Consensus 505 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~--Fl~ra~dQi~~~~a~~~-lpV~~v-~~~~G~~G~dG~THq~- 579 (784)
.|.+++..|.-= ..+..|.|+++...++++++..+ |+.. ...+ ..++..+ .|++++ .+..++ +..+.++..
T Consensus 34 ~~~~~~~~g~mG-~~lp~AiGaala~~~~vv~i~GDG~f~m~-~~el-~ta~~~~~~~l~vvV~NN~~~-~~~~~~~~~~ 109 (179)
T cd03372 34 RPLNFYMLGSMG-LASSIGLGLALAQPRKVIVIDGDGSLLMN-LGAL-ATIAAEKPKNLIIVVLDNGAY-GSTGNQPTHA 109 (179)
T ss_pred cccccccccchh-hHHHHHHHHHhcCCCcEEEEECCcHHHhC-HHHH-HHHHHcCCCCEEEEEEcCccc-cccCCCCCCC
Confidence 466776422211 22236777776543677777543 5322 2222 3445555 455555 455543 211211111
Q ss_pred --hhhHh-HhccCCCcEEEecC-CHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 580 --AFDVT-FMSCLPNMVVMAPS-DEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 580 --~~dla-~lr~iPn~~V~~Ps-d~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
..|.. +.++ -|+...... +++|+...+++++ ++|.+|-.
T Consensus 110 ~~~~d~~~lA~a-~G~~~~~v~~~~~el~~al~~a~---~gp~lIev 152 (179)
T cd03372 110 GKKTDLEAVAKA-CGLDNVATVASEEAFEKAVEQAL---DGPSFIHV 152 (179)
T ss_pred CCCCCHHHHHHH-cCCCeEEecCCHHHHHHHHHHhc---CCCEEEEE
Confidence 11222 2233 255555666 9999999999996 68988754
No 247
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=83.35 E-value=14 Score=43.94 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhhC--CCEEEEecCCCCCCCh---hhhHHhCC-CCeeeccccHHHHHHHHHHHHhc-CCee-EEEecHhH
Q 003948 470 YFAESLIKEAETD--DKIVAIHAAMGGGTGL---NYFQKRFP-DRCFDVGIAEQHAVTFAAGLASE-GVKP-FCAIYSSF 541 (784)
Q Consensus 470 af~~aL~~l~~~d--~~iv~i~aD~ggs~gl---~~f~~~~p-~R~~d~GIaE~~~vg~AaGlA~~-G~~P-~~~tys~F 541 (784)
-.++.|.+.+++. ..++.+- |+..+ +.+.+ .+ =|++.+ ..|++++.+|.|.|.. |... ++.|+.+.
T Consensus 10 ~~a~~l~~~L~~~GV~~vFgvp----G~~~~~l~~~l~~-~~~i~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~GpG 83 (568)
T PRK07449 10 LWAAVILEELTRLGVRHVVIAP----GSRSTPLTLAAAE-HPRLRLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGTA 83 (568)
T ss_pred HHHHHHHHHHHHcCCCEEEECC----CCccHHHHHHHHh-CCCcEEEee-cCcccHHHHHHHHHHhhCCCEEEEECCccH
Confidence 3455666666654 3444432 33322 33322 22 255554 7999999999999975 5433 34458888
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHH----H-HHHHHHH---HHHh
Q 003948 542 LQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEA----E-LMHMVAT---AAVI 613 (784)
Q Consensus 542 l~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~----E-~~~~l~~---A~~~ 613 (784)
+..++.-+ ..+...+.||+++.........+-..+|......+++.+-...+-.|.+.. + +..+++. +...
T Consensus 84 ~~N~l~~i-~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~ 162 (568)
T PRK07449 84 VANLYPAV-IEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTL 162 (568)
T ss_pred HHhhhHHH-HHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 77777665 567788999999863322211111235666667777776655555565521 1 2334444 3223
Q ss_pred CCCCeEEEcCCC
Q 003948 614 DDRPSCFRFPRG 625 (784)
Q Consensus 614 ~~~Pv~irl~r~ 625 (784)
..+||+|-+|..
T Consensus 163 ~~GPV~i~iP~D 174 (568)
T PRK07449 163 QAGPVHINCPFR 174 (568)
T ss_pred CCCCEEEeCCCC
Confidence 568999999865
No 248
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=83.27 E-value=10 Score=40.81 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=41.1
Q ss_pred cccchhHHHHHHHHHHHH--H-hCC--C--CeEEEEEcCCc--ccchhhHHHHHHHhhcCCCEEEEEECCC
Q 003948 253 GHSSTSISAGLGMAVARD--I-LGK--N--NNVISVIGDGA--MTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (784)
Q Consensus 253 G~~G~~ls~AvG~AlA~~--~-~g~--~--~~Vv~viGDGa--l~eG~~~EAln~A~~~~~nlivIv~dN~ 314 (784)
+.-|+.+..++-.|+..= . .+. . .+++.++.||+ .++|..-+++..|...+..+++|+-||.
T Consensus 135 ~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 135 QQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred CCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 334455666665554421 1 111 1 28999999999 8889887778888888877777766664
No 249
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=83.24 E-value=18 Score=39.45 Aligned_cols=145 Identities=13% Similarity=0.160 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeecc-c--cHHHHHHHHHHHHhcC-CeeEEEec--Hh
Q 003948 467 YTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVG-I--AEQHAVTFAAGLASEG-VKPFCAIY--SS 540 (784)
Q Consensus 467 ~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~G-I--aE~~~vg~AaGlA~~G-~~P~~~ty--s~ 540 (784)
...++.++|.++....++.+++ .|.|.+..+ + ++++.+ + .=..++.+|.|+++.. -++++++. .+
T Consensus 28 il~~l~~al~~l~~~p~d~vvv-sdiGc~~~~-------~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i~GDG~ 98 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVV-SGIGCSGRL-------P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVVTGDGD 98 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEE-eCCcccccc-------C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEEeCccH
Confidence 4456666665554444455444 466644321 1 344432 1 1123455677777652 34555553 32
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC-CCCC----------CcCch----hhH-hHhccCCC--cEEEecCC
Q 003948 541 FLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGP----------THCGA----FDV-TFMSCLPN--MVVMAPSD 599 (784)
Q Consensus 541 Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~--~G-~dG~----------THq~~----~dl-a~lr~iPn--~~V~~Psd 599 (784)
+++-....+ ..++..++|+++++ +..++ ++ ...+ +..+. .|. ++...... +......+
T Consensus 99 ~f~mg~~eL-~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~ 177 (286)
T PRK11867 99 ALAIGGNHF-IHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSD 177 (286)
T ss_pred HHhCCHHHH-HHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCC
Confidence 233334444 34677899987776 33332 22 1111 00110 222 22233222 22335789
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEc
Q 003948 600 EAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 600 ~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
++|+..+++.|++ .++|++|-.
T Consensus 178 ~~el~~al~~Al~-~~Gp~lIev 199 (286)
T PRK11867 178 VKQLTELIKAAIN-HKGFSFVEI 199 (286)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 9999999999987 678988754
No 250
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=82.86 E-value=7.9 Score=46.04 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=74.6
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~d 582 (784)
=+++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+.+ .+|....
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 121 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGI-ATAYMDSVPIVALTGQVPRSMIGND--AFQEADI 121 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEeccCCccccCCC--Cccccch
Confidence 466666 8999999999999975 6444444 4777776666665 5677789999988632222 1322 2444444
Q ss_pred HhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 583 la~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
..+++.+-.. .+.-.++.++..++..|+.. ..+|++|-+|..
T Consensus 122 ~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 122 TGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred hhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 4555554332 33456777877777777763 358999999875
No 251
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=82.85 E-value=8.1 Score=45.86 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=76.0
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEEe-cHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCC--CCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLV--GADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~t-ys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~--G~dG~THq~~~dl 583 (784)
|++.+ -.|++++.+|.|.|.. |...+|.+ ..+.+..+..-+ ..+...+.||+++....... +.....+|.....
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~ 119 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQL 119 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHH-HHHHhcCCCEEEEEccCCccccccCCCCcchhhHH
Confidence 66664 8999999999999975 65455443 677666666554 56677899999886322211 1112236665566
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHH----hCCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~----~~~~Pv~irl~r~ 625 (784)
.+++.+-.. .+...++.++..++..|+. ...+|++|-+|..
T Consensus 120 ~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 120 AAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred HHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 777765443 5566677777777766665 2457899999865
No 252
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=81.27 E-value=19 Score=41.33 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=70.9
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++. ...|++++-+|-|.|.. |...+|. |+.+....++.-+ ..+...+.||+++...... .+.+ .+|.....
T Consensus 40 ~~v~-~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~~d~~ 115 (432)
T TIGR00173 40 RVHV-HIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAV-IEASYSGVPLIVLTADRPPELRGCG--ANQTIDQP 115 (432)
T ss_pred EEEE-ecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHH-HHhcccCCcEEEEeCCCCHHHhCCC--CCcccchh
Confidence 5554 48999999999999986 6443433 4777766666554 4567789999988632221 2322 25555566
Q ss_pred hHhccCCCcE--EEecCC-------HHHHHHHHHHHHHhCCCCeEEEcCCCC
Q 003948 584 TFMSCLPNMV--VMAPSD-------EAELMHMVATAAVIDDRPSCFRFPRGN 626 (784)
Q Consensus 584 a~lr~iPn~~--V~~Psd-------~~E~~~~l~~A~~~~~~Pv~irl~r~~ 626 (784)
.+++.+-.+. |-.|.+ +..+..+++.|.....+|++|-+|...
T Consensus 116 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 116 GLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 6777655432 334444 233444555554334589999998653
No 253
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=81.07 E-value=11 Score=45.23 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=73.3
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++. ...|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+.+ .+|.....
T Consensus 53 ~~i~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~~ 128 (585)
T CHL00099 53 KHIL-VRHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGI-ATAQMDSVPLLVITGQVGRAFIGTD--AFQEVDIF 128 (585)
T ss_pred eEEE-ecCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--Cccccchh
Confidence 5666 47999999999999975 6444443 4777766666554 5667789999998633222 2222 24444444
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
.+++.+-.. .....+++++..++..|+.. ..+|++|-+|..
T Consensus 129 ~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 129 GITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred hhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 455543322 34556778888888777763 347999999875
No 254
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=80.78 E-value=12 Score=38.31 Aligned_cols=99 Identities=9% Similarity=0.130 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhc----C-CeeEEEecHhH-HH--HHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccC
Q 003948 518 HAVTFAAGLASE----G-VKPFCAIYSSF-LQ--RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCL 589 (784)
Q Consensus 518 ~~vg~AaGlA~~----G-~~P~~~tys~F-l~--ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~i 589 (784)
+.+++|.|+|+. | -++++++..+. ++ ..++.+ +.++....|++++++..++ +.++++. ...+ .++.
T Consensus 79 ~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~~~li~vvdnN~~-~~~~~~~-~~~~--~~~a- 152 (195)
T cd02007 79 TSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEAL-NNAGYLKSNMIVILNDNEM-SISPNVG-TPGN--LFEE- 152 (195)
T ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHH-HHHHHhCCCEEEEEECCCc-ccCCCCC-CHHH--HHHh-
Confidence 344556666653 3 24455554432 12 223443 5566679999999887774 3445543 2222 3333
Q ss_pred CCcEE---EecCCHHHHHHHHHHHHHhCCCCeEEEcC
Q 003948 590 PNMVV---MAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 590 Pn~~V---~~Psd~~E~~~~l~~A~~~~~~Pv~irl~ 623 (784)
.++.+ +...|..++...++.+.+ .++|++|...
T Consensus 153 ~G~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~~ 188 (195)
T cd02007 153 LGFRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHVV 188 (195)
T ss_pred cCCCccceECCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 34333 566789999999988865 6789988653
No 255
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=80.77 E-value=10 Score=45.29 Aligned_cols=116 Identities=12% Similarity=0.024 Sum_probs=77.1
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~d 582 (784)
=|++.+ -.|++++.+|.|.|.. |...+|. +..+.+..+..-+ ..+...+.||+++...... .+.+-.++|....
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 125 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEEccCCcccccccCCCccccch
Confidence 356655 8899999999999986 5555544 3677776666655 5677789999988632211 1111124666666
Q ss_pred HhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 583 la~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
..+++.+-.. .+...++.++...+..|+.. ..+|++|-+|+.
T Consensus 126 ~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 126 LNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred hhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 6677765543 45556778887777777662 457899999865
No 256
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=80.70 E-value=5 Score=41.08 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=68.5
Q ss_pred hHHhCCCCeeeccc-cHHH-HHHHHHHHHhc-CCeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC-C-CC
Q 003948 501 FQKRFPDRCFDVGI-AEQH-AVTFAAGLASE-GVKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL-V-GA 572 (784)
Q Consensus 501 f~~~~p~R~~d~GI-aE~~-~vg~AaGlA~~-G~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~-~-G~ 572 (784)
+.-..|.++++.+- .=.+ .+..|.|+++. .-+|++++. ..|+...-| +..+...++|+++++ +..|+ . ..
T Consensus 42 ~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m~~~e--L~Ta~~~~lpviivV~NN~~yg~~~~ 119 (202)
T cd02006 42 LHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEE--LAVGAQHRIPYIHVLVNNAYLGLIRQ 119 (202)
T ss_pred cCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhccHHH--HHHHHHhCCCeEEEEEeCchHHHHHH
Confidence 33355788887642 2122 44567777765 346666664 446544322 245777899988776 44443 1 00
Q ss_pred ------CC----CCcCc---------hhhHhHhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEc
Q 003948 573 ------DG----PTHCG---------AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (784)
Q Consensus 573 ------dG----~THq~---------~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl 622 (784)
++ ..+.. ..|..-++.--|+.-+...++.|+...+++|++ ..++|++|-.
T Consensus 120 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 120 AQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 00 00110 123222222236777888999999999999985 2578988754
No 257
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=80.30 E-value=7.2 Score=40.09 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=64.4
Q ss_pred hCCCCeeeccccHHHHHH----HHHHHHhcC-CeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCC-----
Q 003948 504 RFPDRCFDVGIAEQHAVT----FAAGLASEG-VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV----- 570 (784)
Q Consensus 504 ~~p~R~~d~GIaE~~~vg----~AaGlA~~G-~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~----- 570 (784)
..|.+++..+- .+.+| .|.|+++.. -++++++. ..|+.-. |-+..+...++|+++++ +..|+.
T Consensus 36 ~~~~~~~~~~~--~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~ 111 (205)
T cd02003 36 RTPGGYHLEYG--YSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCINNL 111 (205)
T ss_pred CCCCcEEcCCC--cchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHHHH
Confidence 45788886532 34444 566666543 35666664 4465322 22345677799976665 544431
Q ss_pred ----CCC--CCCcC-------------chhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 571 ----GAD--GPTHC-------------GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 571 ----G~d--G~THq-------------~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
+.. +.... ...|..-+..--|+..+...+++|+...++.|++ .++|++|-.
T Consensus 112 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 112 QESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 100 00000 0123332222236777777999999999999976 688988744
No 258
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=80.14 E-value=8.3 Score=39.34 Aligned_cols=116 Identities=9% Similarity=0.030 Sum_probs=66.9
Q ss_pred hCCCCeeeccc-cH-HHHHHHHHHHHhc-CCeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCC--CC---
Q 003948 504 RFPDRCFDVGI-AE-QHAVTFAAGLASE-GVKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV--GA--- 572 (784)
Q Consensus 504 ~~p~R~~d~GI-aE-~~~vg~AaGlA~~-G~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~--G~--- 572 (784)
..|.+++..+- .= -..+.+|.|+++. .-++++++. ..|+.-.-| + ..+...++|+++++ +..|+. ..
T Consensus 41 ~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m~~~e-L-~Ta~~~~lpvi~vV~NN~~yg~~~~~q~ 118 (196)
T cd02013 41 EKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMSMME-I-MTAVRHKLPVTAVVFRNRQWGAEKKNQV 118 (196)
T ss_pred CCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHH-H-HHHHHhCCCeEEEEEECchhHHHHHHHH
Confidence 45788886421 21 2245577777765 345666663 446544333 3 34677789988777 555531 10
Q ss_pred --CC-----CCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHH--hCCCCeEEEc
Q 003948 573 --DG-----PTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV--IDDRPSCFRF 622 (784)
Q Consensus 573 --dG-----~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~--~~~~Pv~irl 622 (784)
.+ ..+. ..|..-+..--|+.-+.-.++.|+...+++|++ +.++|++|-.
T Consensus 119 ~~~~~~~~~~~~~-~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev 176 (196)
T cd02013 119 DFYNNRFVGTELE-SESFAKIAEACGAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEI 176 (196)
T ss_pred HHcCCCcccccCC-CCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 01 0111 123332222236667788899999999999976 2478988754
No 259
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=79.83 E-value=31 Score=40.83 Aligned_cols=147 Identities=19% Similarity=0.159 Sum_probs=84.3
Q ss_pred HHHHHHHHhhCC--CEEEEecCCCCCCCh---hhhHHhCC-CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHH
Q 003948 472 AESLIKEAETDD--KIVAIHAAMGGGTGL---NYFQKRFP-DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQ 543 (784)
Q Consensus 472 ~~aL~~l~~~d~--~iv~i~aD~ggs~gl---~~f~~~~p-~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ 543 (784)
++.|.+.+++.. .|+.+. |++.+ +.+.+ .+ =|++. .-.|++++-+|.|.|.. |...+|. ++.+...
T Consensus 3 ~~~l~~~L~~~Gv~~vFGvp----G~~~~~l~~al~~-~~~i~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 76 (535)
T TIGR03394 3 AEALLRALKDRGAQEMFGIP----GDFALPFFKVIEE-TGILPLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAGAF 76 (535)
T ss_pred HHHHHHHHHHcCCCEEEECC----CcccHHHHHHHhh-CCCCeEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchHHH
Confidence 455556555543 344433 33322 33332 23 36666 58999999999999985 6555544 4777766
Q ss_pred HHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCC-cCc--hh-hHhHhccCCCc--EEEecCC-HHHHHHHHHHHHHhC
Q 003948 544 RGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT-HCG--AF-DVTFMSCLPNM--VVMAPSD-EAELMHMVATAAVID 614 (784)
Q Consensus 544 ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~T-Hq~--~~-dla~lr~iPn~--~V~~Psd-~~E~~~~l~~A~~~~ 614 (784)
.+..-+ ..+...+.||+++...... .+.+... ||. .. ...+++.+-.+ .|..|.+ +..+..+++.|+. .
T Consensus 77 n~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~ 154 (535)
T TIGR03394 77 NMVNAI-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-L 154 (535)
T ss_pred hhhhHH-HHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-C
Confidence 666555 4566789999998632221 2332223 443 22 23556654332 2334444 3334555565654 5
Q ss_pred CCCeEEEcCCCC
Q 003948 615 DRPSCFRFPRGN 626 (784)
Q Consensus 615 ~~Pv~irl~r~~ 626 (784)
.+|++|-+|+..
T Consensus 155 ~gPv~i~iP~Dv 166 (535)
T TIGR03394 155 SRPVYLEIPRDM 166 (535)
T ss_pred CCCEEEEechhh
Confidence 689999998753
No 260
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=78.82 E-value=20 Score=38.19 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=61.4
Q ss_pred HHHHHHHHHhc------CCeeEEEe-cHhHHH-HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcC--chhhHh-Hh
Q 003948 519 AVTFAAGLASE------GVKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC--GAFDVT-FM 586 (784)
Q Consensus 519 ~vg~AaGlA~~------G~~P~~~t-ys~Fl~-ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq--~~~dla-~l 586 (784)
.+++|.|+|+. ..+.+|-+ -..|.. ..++.+ ..++..++| ++++.+..++ +.+++++. ...+++ .+
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal-~~a~~~~l~~li~vvdnN~~-~~~~~~~~~~~~~~~~~~~ 187 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAA-SFAGHYKLDNLIAIVDSNRI-QIDGPTDDILFTEDLAKKF 187 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHH-HHHHHcCCCcEEEEEECCCc-cccCcHhhccCchhHHHHH
Confidence 44566666664 34444444 233432 234444 567788887 6666676664 34454432 223332 44
Q ss_pred ccCCCcEEEecC--CHHHHHHHHHHHHHhCCCCeEEEcC
Q 003948 587 SCLPNMVVMAPS--DEAELMHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 587 r~iPn~~V~~Ps--d~~E~~~~l~~A~~~~~~Pv~irl~ 623 (784)
++ -|+.++.-. |..++...++.+.+..++|++|...
T Consensus 188 ~a-~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 188 EA-FGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred HH-cCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 44 377777777 9999999999987644789887654
No 261
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=77.90 E-value=25 Score=38.17 Aligned_cols=149 Identities=10% Similarity=0.106 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcC-CeeEEEec--HhHH
Q 003948 466 TYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIY--SSFL 542 (784)
Q Consensus 466 s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G-~~P~~~ty--s~Fl 542 (784)
....++.+++.++.-..++.+++ .|.|.+..+..+.+ +. .++.. =..++.+|.|+.+.. -++++++. .+|+
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~~~~~~~~--~~-~~~~~--mG~alp~AiGaklA~pd~~VVai~GDG~~~ 91 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIV-SGIGQAAKMPHYIN--VN-GFHTL--HGRAIPAATAVKATNPELTVIAEGGDGDMY 91 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEE-eCchHhhhHHHHcc--CC-CCCcc--cccHHHHHHHHHHHCCCCcEEEEECchHHh
Confidence 34566777776653333444444 45554332222211 11 11111 113556777777764 36677764 3344
Q ss_pred HHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC-CCCCC--------------cCchhhHhHhccCCCcEEEe---cCCHH
Q 003948 543 QRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGPT--------------HCGAFDVTFMSCLPNMVVMA---PSDEA 601 (784)
Q Consensus 543 ~ra~dQi~~~~a~~~lpV~~v~-~~~G~--~G-~dG~T--------------Hq~~~dla~lr~iPn~~V~~---Psd~~ 601 (784)
.-++..+ ..++..++|+++++ +..++ ++ ..-++ -....|+.-+..--|...++ +.++.
T Consensus 92 ~iG~~eL-~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~ 170 (280)
T PRK11869 92 AEGGNHL-IHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIE 170 (280)
T ss_pred hCcHHHH-HHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHH
Confidence 3434454 45778899988877 43332 21 11000 00111222222222444444 99999
Q ss_pred HHHHHHHHHHHhCCCCeEEEc
Q 003948 602 ELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 602 E~~~~l~~A~~~~~~Pv~irl 622 (784)
|+...++.|++ .++|++|-.
T Consensus 171 ~l~~~i~~Al~-~~Gp~lIeV 190 (280)
T PRK11869 171 ETKEILKEAIK-HKGLAIVDI 190 (280)
T ss_pred HHHHHHHHHHh-CCCCEEEEE
Confidence 99999999987 688988754
No 262
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=77.79 E-value=13 Score=41.76 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCe--eEEEecHhHH--H-HHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCc-CchhhH----hH
Q 003948 517 QHAVTFAAGLASEGVK--PFCAIYSSFL--Q-RGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTH-CGAFDV----TF 585 (784)
Q Consensus 517 ~~~vg~AaGlA~~G~~--P~~~tys~Fl--~-ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~TH-q~~~dl----a~ 585 (784)
-+++|+|.++-+.|-. ..+++|.+.. + --++. +|.++..++||+|++-.-+. .+ -|.. |...++ +.
T Consensus 143 ~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEa-lN~A~v~klPvvf~ieNN~yAiS--vp~~~q~~~~~~~~ra~ 219 (358)
T COG1071 143 PLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEA-LNFAAVWKLPVVFVIENNQYAIS--VPRSRQTAAEIIAARAA 219 (358)
T ss_pred cHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHH-HHHHHHhcCCEEEEEecCCceee--cchhhcccchhHHhhhh
Confidence 3566666666666733 3444455432 1 11233 48999999999999965553 22 1222 322221 23
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHHh---CCCCeEEEc
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRF 622 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl 622 (784)
.-.||++.| .=.|...+..++++|.++ .++|++|-.
T Consensus 220 aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 220 AYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred ccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 336899988 888999999999988873 557988744
No 263
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=77.41 E-value=16 Score=43.63 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=75.7
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCC----C--CCc
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGAD----G--PTH 577 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~d----G--~TH 577 (784)
|++.+ -.|++++.+|-|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+.+ - ..+
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 129 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGV-HNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWT 129 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHH-HHHhhcCCCEEEEeccCCccccccccccccCcccc
Confidence 67765 7899999999999986 5444443 4788777776665 4567789999988632221 1111 0 123
Q ss_pred Cc-hhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 578 CG-AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 578 q~-~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
|. .....+++.+-.. .+...++.++...+..|+.. ..+||+|-+|..
T Consensus 130 qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 130 QEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred hhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 44 3555666654332 45677788888888877762 367999999854
No 264
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=76.30 E-value=57 Score=33.10 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=59.6
Q ss_pred CCCCeeeccccHHHHHHHHHHHHhcC-CeeEEEec--HhHHHHHHHHHHHHhhcCCC-CEEEEe-eCCCC--CCCCCCCc
Q 003948 505 FPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIY--SSFLQRGYDQVVHDVDLQKL-PVRFAM-DRAGL--VGADGPTH 577 (784)
Q Consensus 505 ~p~R~~d~GIaE~~~vg~AaGlA~~G-~~P~~~ty--s~Fl~ra~dQi~~~~a~~~l-pV~~v~-~~~G~--~G~dG~TH 577 (784)
.|.+|+..|--= ..++.|.|+++.. -++++.+. ..|+.- ... +..++..++ |+++++ +..|+ .+.. .+.
T Consensus 40 ~~~~~~~~g~mG-~~lpaAiGaala~p~~~Vv~i~GDG~f~m~-~~e-L~ta~~~~l~~i~ivV~NN~~yg~~~~~-~~~ 115 (188)
T cd03371 40 HAQDFLTVGSMG-HASQIALGIALARPDRKVVCIDGDGAALMH-MGG-LATIGGLAPANLIHIVLNNGAHDSVGGQ-PTV 115 (188)
T ss_pred ccCceeecCccc-cHHHHHHHHHHhCCCCcEEEEeCCcHHHhh-ccH-HHHHHHcCCCCcEEEEEeCchhhccCCc-CCC
Confidence 347888752211 1345677777643 35666664 445422 222 244555665 554444 55543 2111 111
Q ss_pred CchhhHh-HhccCCCcE-EEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 578 CGAFDVT-FMSCLPNMV-VMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 578 q~~~dla-~lr~iPn~~-V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
....|.. +.+.+ |+. +....+++|+..+++++++ .++|++|..
T Consensus 116 ~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev 160 (188)
T cd03371 116 SFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEV 160 (188)
T ss_pred CCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1112322 33332 454 3456799999999999976 578988754
No 265
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=75.94 E-value=10 Score=36.91 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcC-CeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEee-CCCC--CCCC------C---CCcCchhhH
Q 003948 519 AVTFAAGLASEG-VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMD-RAGL--VGAD------G---PTHCGAFDV 583 (784)
Q Consensus 519 ~vg~AaGlA~~G-~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~~-~~G~--~G~d------G---~THq~~~dl 583 (784)
.++.|.|+++.. -++++.+. ..|+. ..+.+ ..+...++|+++++. ..+. .+.. + ....+..|+
T Consensus 51 ~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~~~l-~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 51 GLPAAIGAALAAPDRPVVCIAGDGGFMM-TGQEL-ATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcCcHHhc-cHHHH-HHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCH
Confidence 344677777654 24445543 44543 34443 456677999888773 3332 1100 0 011112233
Q ss_pred h-HhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 584 T-FMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 584 a-~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
. +.+. -|+......++.|+...++++.. .++|++|..
T Consensus 129 ~~~a~~-~G~~~~~v~~~~~l~~a~~~a~~-~~~p~~i~v 166 (168)
T cd00568 129 AALAEA-YGAKGVRVEDPEDLEAALAEALA-AGGPALIEV 166 (168)
T ss_pred HHHHHH-CCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2 3333 36777778889999999999975 678988753
No 266
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=73.07 E-value=39 Score=34.38 Aligned_cols=101 Identities=11% Similarity=0.098 Sum_probs=54.6
Q ss_pred HHHHHHHHhc-CCeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC-CC------CC-CcC---c---
Q 003948 520 VTFAAGLASE-GVKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG-AD------GP-THC---G--- 579 (784)
Q Consensus 520 vg~AaGlA~~-G~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~--~G-~d------G~-THq---~--- 579 (784)
+..|.|+++. .-++++.+. ..|++-....+ ..+...++|++++. +..++ .+ .. |. ++. .
T Consensus 57 lpaAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL-~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (193)
T cd03375 57 LAVATGVKLANPDLTVIVVSGDGDLAAIGGNHF-IHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIE 135 (193)
T ss_pred HHHHHHHHHhCCCCeEEEEeccchHhhccHHHH-HHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCC
Confidence 3367776664 346666664 33333333333 34667799988766 44443 21 00 00 000 0
Q ss_pred -hhhHh-HhccC--CCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 580 -AFDVT-FMSCL--PNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 580 -~~dla-~lr~i--Pn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
..|.. +.+.+ +........++.|+...+++|++ .++|++|-.
T Consensus 136 ~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev 181 (193)
T cd03375 136 EPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEV 181 (193)
T ss_pred CCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEE
Confidence 01222 22222 22222468999999999999987 688988754
No 267
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=72.88 E-value=21 Score=35.40 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=62.3
Q ss_pred hCCCCeeeccccHH-HHHHHHHHHHhcC-CeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCC--C-----
Q 003948 504 RFPDRCFDVGIAEQ-HAVTFAAGLASEG-VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV--G----- 571 (784)
Q Consensus 504 ~~p~R~~d~GIaE~-~~vg~AaGlA~~G-~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~--G----- 571 (784)
..|.+++..+-.=. ..+..|.|+++.- -++++++. ..|+.-. ..+ ..+...++|+++++ +..++. .
T Consensus 38 ~~~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~~-~el-~ta~~~~~p~~~iV~nN~~~~~~~~~~~~ 115 (178)
T cd02002 38 TRPGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYTI-QAL-WTAARYGLPVTVVILNNRGYGALRSFLKR 115 (178)
T ss_pred CCCCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhccH-HHH-HHHHHhCCCeEEEEEcCccHHHHHHHHHH
Confidence 45788886533111 1334677777652 34555553 4454222 222 45667799988876 443321 0
Q ss_pred --CC--------CC-CcCchhhHh-HhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEE
Q 003948 572 --AD--------GP-THCGAFDVT-FMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621 (784)
Q Consensus 572 --~d--------G~-THq~~~dla-~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~ir 621 (784)
.+ +. ......|+. +... -|+..+...++.|+...++++++ .++|++|-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~vi~ 175 (178)
T cd02002 116 VGPEGPGENAPDGLDLLDPGIDFAAIAKA-FGVEAERVETPEELDEALREALA-EGGPALIE 175 (178)
T ss_pred HcCCCcccccccccccCCCCCCHHHHHHH-cCCceEEeCCHHHHHHHHHHHHh-CCCCEEEE
Confidence 00 00 001112332 2233 25666777889999999999976 67898874
No 268
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=72.76 E-value=8.6 Score=34.05 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=46.8
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhc----cCCeEEEEcCCCcCCcHHH
Q 003948 652 GDRVAILGYGS----IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN----EHEILITVEEGSVGGFGSH 721 (784)
Q Consensus 652 G~dvtIva~Gs----~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~----~~~~vVvvEe~~~gG~gs~ 721 (784)
..+|+|++.|+ .-..|.+|.+.|++.|+..+.+|+.. |.+...++.+ .+-+.|++.....||+...
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l 80 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV 80 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence 46899999884 56789999999999999999999752 3333222222 2346777776567998644
No 269
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=70.96 E-value=10 Score=31.91 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=43.3
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhc-cCCeEEEEcCCCcCCcHH
Q 003948 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEEGSVGGFGS 720 (784)
Q Consensus 654 dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~-~~~~vVvvEe~~~gG~gs 720 (784)
+++|.+. +.-..|.+|.+.|++.||+.+.+|+..-.+ ..+.+.+... .+-+.|++.+...||+.+
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~~~iGg~~~ 67 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNEKLVGGLTD 67 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 4666655 344679999999999999999999874222 1233444332 334677777766798763
No 270
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=70.85 E-value=21 Score=39.14 Aligned_cols=102 Identities=11% Similarity=0.147 Sum_probs=58.3
Q ss_pred HHHHHHHHHhc-CCeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC-CCCCCc----------C---
Q 003948 519 AVTFAAGLASE-GVKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGPTH----------C--- 578 (784)
Q Consensus 519 ~vg~AaGlA~~-G~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~--~G-~dG~TH----------q--- 578 (784)
++.+|.|+++. .-++++++- .+|+.-....+. .++..++|+++++ +..++ ++ ..-++. .
T Consensus 75 alpaAiGaklA~pd~~VV~i~GDG~~~~mg~~eL~-tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~ 153 (301)
T PRK05778 75 AIAFATGAKLANPDLEVIVVGGDGDLASIGGGHFI-HAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNI 153 (301)
T ss_pred HHHHHHHHHHHCCCCcEEEEeCccHHHhccHHHHH-HHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCc
Confidence 45577777765 245566653 334434444443 4678899987776 44432 22 100110 0
Q ss_pred -chhhHhHhccCCCcEEE---ecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 579 -GAFDVTFMSCLPNMVVM---APSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 579 -~~~dla~lr~iPn~~V~---~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
...|+..++.--|...+ ...++.|+..+++.|+. .++|++|-.
T Consensus 154 ~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 154 EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11233323222344443 68999999999999987 688988754
No 271
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=70.82 E-value=24 Score=35.24 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=51.5
Q ss_pred HHHHHHHhcC-CeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CCCC----CC----CcCchhhHh-H
Q 003948 521 TFAAGLASEG-VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VGAD----GP----THCGAFDVT-F 585 (784)
Q Consensus 521 g~AaGlA~~G-~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~--~G~d----G~----THq~~~dla-~ 585 (784)
+.|.|+++.. -++++.+. ..|+.-++..+ ..+...++|+++++ +..++ .+.. +. +.....|+. +
T Consensus 58 ~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL-~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~ 136 (178)
T cd02008 58 GVAIGMAKASEDKKVVAVIGDSTFFHSGILGL-INAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEAL 136 (178)
T ss_pred HHHhhHHhhCCCCCEEEEecChHHhhccHHHH-HHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHH
Confidence 3566666553 45666664 44543333333 44677899987776 44443 2210 00 011112222 2
Q ss_pred hcc--CCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 586 MSC--LPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 586 lr~--iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
.++ +....|-.|.+-.++...++.+++ .++|.+|..
T Consensus 137 a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 137 VRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 222 233444455555555588898876 678988754
No 272
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=68.94 E-value=26 Score=33.94 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=62.9
Q ss_pred CCCCeeec--cccHHHHHHHHHHHHhcC-CeeEEEe--cHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC----C
Q 003948 505 FPDRCFDV--GIAEQHAVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG----A 572 (784)
Q Consensus 505 ~p~R~~d~--GIaE~~~vg~AaGlA~~G-~~P~~~t--ys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~--~G----~ 572 (784)
.|.|++.. .-+=..++++|.|+++.. -++++.+ =..|+.- ...+ ..+...++|+++++ +..++ .+ .
T Consensus 17 ~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~-~~el-~ta~~~~~~v~~vv~nN~~~~~~~~~~~~ 94 (153)
T PF02775_consen 17 RPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMS-LQEL-ATAVRYGLPVVIVVLNNGGYGMTGGQQTP 94 (153)
T ss_dssp STTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHH-GGGH-HHHHHTTSSEEEEEEESSBSHHHHHHHHH
T ss_pred CCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeec-cchh-HHHhhccceEEEEEEeCCcceEecccccc
Confidence 36777762 223335566777877762 3555555 3556544 2233 45677789977776 44443 10 0
Q ss_pred CCC-C----c---CchhhH-hHhccCCCcEEEecC--CHHHHHHHHHHHHHhCCCCeEE
Q 003948 573 DGP-T----H---CGAFDV-TFMSCLPNMVVMAPS--DEAELMHMVATAAVIDDRPSCF 620 (784)
Q Consensus 573 dG~-T----H---q~~~dl-a~lr~iPn~~V~~Ps--d~~E~~~~l~~A~~~~~~Pv~i 620 (784)
.+. + . ....|+ .+.+. -|+..+.-. |++|+...+++++. .++|++|
T Consensus 95 ~~~~~~~~~~~~~~~~~d~~~~a~a-~G~~~~~v~~~~~~el~~al~~a~~-~~gp~vI 151 (153)
T PF02775_consen 95 FGGGRFSGVDGKTFPNPDFAALAEA-FGIKGARVTTPDPEELEEALREALE-SGGPAVI 151 (153)
T ss_dssp TTSTCHHSTBTTTSTTCGHHHHHHH-TTSEEEEESCHSHHHHHHHHHHHHH-SSSEEEE
T ss_pred CcCcccccccccccccCCHHHHHHH-cCCcEEEEccCCHHHHHHHHHHHHh-CCCcEEE
Confidence 011 1 0 112233 33333 366665544 45999999999985 7889887
No 273
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=68.05 E-value=14 Score=33.38 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=47.9
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh-ccCCeEEEEcCCCcCCcHHHH
Q 003948 652 GDRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGSHV 722 (784)
Q Consensus 652 G~dvtIva~G----s~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~-~~~~~vVvvEe~~~gG~gs~V 722 (784)
..+|+|++.| +.-..|.+|.+.|++.|++...+|+.. .|--.+.+.+.. ..+-+.|++.....||+....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~-~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~ 85 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE-DPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIM 85 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHH
Confidence 4689999988 456889999999999999999999852 121112232222 224467788876679987554
No 274
>PRK06154 hypothetical protein; Provisional
Probab=67.17 E-value=42 Score=40.08 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=68.6
Q ss_pred hHHhCCCCeeeccc--cHHHHHHHHHHHHhcC-CeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCC-
Q 003948 501 FQKRFPDRCFDVGI--AEQHAVTFAAGLASEG-VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGAD- 573 (784)
Q Consensus 501 f~~~~p~R~~d~GI--aE~~~vg~AaGlA~~G-~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~G~d- 573 (784)
+.-..|.+|+..+- +=-..+..|.|+++.- -++++++. ..|++-.-| +..+...++|+++++ ...++....
T Consensus 416 ~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~E--L~Ta~r~~lpi~~vV~NN~~yg~~~~ 493 (565)
T PRK06154 416 YVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMD--FETAVRERIPILTILLNNFSMGGYDK 493 (565)
T ss_pred CCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHH--HHHHHHhCCCeEEEEEECCccceeeh
Confidence 33345788987642 1112444566666652 46666664 446544322 356778899987776 444431010
Q ss_pred -----CCCcCc---hhhHh-HhccCCCcEEEecCCHHHHHHHHHHHHH--hCCCCeEEEc
Q 003948 574 -----GPTHCG---AFDVT-FMSCLPNMVVMAPSDEAELMHMVATAAV--IDDRPSCFRF 622 (784)
Q Consensus 574 -----G~THq~---~~dla-~lr~iPn~~V~~Psd~~E~~~~l~~A~~--~~~~Pv~irl 622 (784)
+..+.. ..|.. +.++ -|+.-+.-.++.|+...++.|+. ..++|++|-.
T Consensus 494 ~~~~~~~~~~~~~~~~df~~lA~a-~G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIev 552 (565)
T PRK06154 494 VMPVSTTKYRATDISGDYAAIARA-LGGYGERVEDPEMLVPALLRALRKVKEGTPALLEV 552 (565)
T ss_pred hhhhhcCcccccCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHhhccCCCeEEEEE
Confidence 111110 01333 3333 36777888899999999999986 3577988754
No 275
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=66.39 E-value=68 Score=32.04 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=24.4
Q ss_pred hhhc-CCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEE
Q 003948 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIH 425 (784)
Q Consensus 387 fea~-G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~ 425 (784)
++.+ |+.++.| -|.++...+++.+.+ .++|+++.
T Consensus 130 lr~iPg~~V~~P---sd~~e~~~~l~~~~~--~~~P~~~~ 164 (167)
T cd07036 130 FAHIPGLKVVAP---STPYDAKGLLKAAIR--DDDPVIFL 164 (167)
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 4444 7777777 567777777887776 46898875
No 276
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=66.07 E-value=49 Score=39.74 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=63.3
Q ss_pred eeccccHHHHHHHHHHHHhc----CC-eeEEEecHh--HHH-HHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCC-----
Q 003948 510 FDVGIAEQHAVTFAAGLASE----GV-KPFCAIYSS--FLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT----- 576 (784)
Q Consensus 510 ~d~GIaE~~~vg~AaGlA~~----G~-~P~~~tys~--Fl~-ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~T----- 576 (784)
+..|+.= +.+++|.|+|+. |. ..+++++.+ +.. .++|.+ +.++..++|++++++.-+.. .++++
T Consensus 110 ~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAl-n~A~~~k~~li~Ii~dN~~s-i~~~~~~~~~ 186 (581)
T PRK12315 110 FTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGL-NNAAELKSNLIIIVNDNQMS-IAENHGGLYK 186 (581)
T ss_pred cCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHH-HHHHhhCCCEEEEEECCCCc-CCCCCchhhh
Confidence 4555533 466778888774 32 234444433 433 556665 77888899999999766642 22222
Q ss_pred cCc------hhh-HhHhcc--CCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEcC
Q 003948 577 HCG------AFD-VTFMSC--LPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 577 Hq~------~~d-la~lr~--iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl~ 623 (784)
|.. ..+ -..+.+ ++.+.++...|..++..+++.|-. .++|++|...
T Consensus 187 ~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~-~~gP~~i~~~ 241 (581)
T PRK12315 187 NLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD-IDHPIVLHIH 241 (581)
T ss_pred hhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 110 001 123444 333344456678888888887743 5789888653
No 277
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=64.96 E-value=33 Score=41.09 Aligned_cols=101 Identities=13% Similarity=0.172 Sum_probs=60.1
Q ss_pred HHHHHHHHHhc-----C-CeeEEEecHhH-HH--HHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCc-----CchhhH-
Q 003948 519 AVTFAAGLASE-----G-VKPFCAIYSSF-LQ--RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGAFDV- 583 (784)
Q Consensus 519 ~vg~AaGlA~~-----G-~~P~~~tys~F-l~--ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~TH-----q~~~dl- 583 (784)
.+++|.|+|+. + -++++++..+. ++ ..++.+ +.++.++.|++++.+..++ +.++++. ....++
T Consensus 122 gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal-~~A~~~~~nli~IvdnN~~-~i~~~~~~~~~~~~~~~~~ 199 (580)
T PRK05444 122 SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEAL-NNAGDLKSDLIVILNDNEM-SISPNVGALSNYLARLRSS 199 (580)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHH-HHHHhhCCCEEEEEECCCC-cCCCcchhhhhhhccccHH
Confidence 45567776653 1 34566665443 12 334444 5677778999988887775 2344442 111221
Q ss_pred hHhccCCCcEEEe---cCCHHHHHHHHHHHHHhCCCCeEEEcC
Q 003948 584 TFMSCLPNMVVMA---PSDEAELMHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 584 a~lr~iPn~~V~~---Psd~~E~~~~l~~A~~~~~~Pv~irl~ 623 (784)
..+++. |+.++. -.|..++...+..+.. .++|++|...
T Consensus 200 ~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~-~~~P~lI~~~ 240 (580)
T PRK05444 200 TLFEEL-GFNYIGPIDGHDLDALIETLKNAKD-LKGPVLLHVV 240 (580)
T ss_pred HHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 234443 665554 4789999999988865 5789887653
No 278
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=64.74 E-value=32 Score=39.82 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHHHHhhCCCEEEEec--CCCCCCChhhhHHhCCCCeeeccccHHHHHH--HHHHHHhc-CCeeEEEe--
Q 003948 465 LTYTQYFAESLIKEAETDDKIVAIHA--AMGGGTGLNYFQKRFPDRCFDVGIAEQHAVT--FAAGLASE-GVKPFCAI-- 537 (784)
Q Consensus 465 ~s~~~af~~aL~~l~~~d~~iv~i~a--D~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg--~AaGlA~~-G~~P~~~t-- 537 (784)
..|.+++ ..+.+++.++ +.+++++ +.- ..|-.-+..+.|.|-+|.|--=..-|| +|.+++.. =-+.+++.
T Consensus 380 LN~~~~~-~~vre~L~~~-d~ilVsEGantm-digr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veG 456 (571)
T KOG1185|consen 380 LNYYQVL-QTVRELLPND-DTILVSEGANTM-DIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEG 456 (571)
T ss_pred CcHHHHH-HHHHHhcCCC-CcEEEecCCcch-hhhhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEec
Confidence 4555544 4455555433 3444432 210 011224556778899988754333222 33333332 23444444
Q ss_pred cHhHHHHHHHHHHHHhhcCCCCEEEEee-CCCCCCCCCCCcCch------hhHhHhccCC-----------CcEEEecCC
Q 003948 538 YSSFLQRGYDQVVHDVDLQKLPVRFAMD-RAGLVGADGPTHCGA------FDVTFMSCLP-----------NMVVMAPSD 599 (784)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~~~lpV~~v~~-~~G~~G~dG~THq~~------~dla~lr~iP-----------n~~V~~Psd 599 (784)
-+.|-.-++| +..++..++||+++.. ..|+.|.|-.+.-++ .++.-..-.+ |.+=+.-.+
T Consensus 457 DsaFGfSaME--~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t 534 (571)
T KOG1185|consen 457 DSAFGFSAME--LETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVST 534 (571)
T ss_pred CcccCcchhh--HHHHHHhcCCeEEEEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeCC
Confidence 3555434444 2456777999888774 667655332222111 1111111112 223344559
Q ss_pred HHHHHHHHHHHHHhCCCCeEE
Q 003948 600 EAELMHMVATAAVIDDRPSCF 620 (784)
Q Consensus 600 ~~E~~~~l~~A~~~~~~Pv~i 620 (784)
+.|+...++.+++..+.|++|
T Consensus 535 ~~el~~~l~~a~q~~~~psvI 555 (571)
T KOG1185|consen 535 VEELLAALQQACQDTDKPSVI 555 (571)
T ss_pred HHHHHHHHHHHHhcCCCCeEE
Confidence 999999999999877789887
No 279
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=64.26 E-value=56 Score=39.54 Aligned_cols=50 Identities=12% Similarity=0.324 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHH-HHHhhcCCCEEEEEECCCC
Q 003948 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM-NNAGFLDANLIVVLNDNKQ 315 (784)
Q Consensus 258 ~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAl-n~A~~~~~nlivIv~dN~~ 315 (784)
.++.|.|||+ .| -++++++ -+.+.. -++|-+ +.++..+.|++++....|.
T Consensus 364 ~vg~AaGlA~----~G-~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~ 414 (617)
T TIGR00204 364 AVTFAAGMAI----EG-YKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGI 414 (617)
T ss_pred HHHHHHHHHH----CC-CEEEEEe--cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 3667777775 23 2444444 556654 677776 5577888999999988875
No 280
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=64.17 E-value=71 Score=43.31 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=72.8
Q ss_pred CeeeccccHHHHHHHHHHHHhcCCeeEEE--ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCA--IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~~P~~~--tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++ ....|++++-+|.|+|..--+|-++ |..+....++--+ ..+...+.|++++...... .+.+ .+|.+.+.
T Consensus 341 ~~i-~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av-~eA~~d~vPlLvItgd~p~~~~~~g--a~Q~iDq~ 416 (1655)
T PLN02980 341 TCI-ACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAV-VEASQDFVPLLLLTADRPPELQDAG--ANQAINQV 416 (1655)
T ss_pred eEE-eccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHH-HHHhhcCCCEEEEeCCCCHHHhcCC--CCcccchh
Confidence 555 4599999999999999864444443 4667666666655 4577789999988633222 2322 36667777
Q ss_pred hHhccCCCcEEE--ecCCH-------HHHHHHHHHHHHhCCCCeEEEcCC
Q 003948 584 TFMSCLPNMVVM--APSDE-------AELMHMVATAAVIDDRPSCFRFPR 624 (784)
Q Consensus 584 a~lr~iPn~~V~--~Psd~-------~E~~~~l~~A~~~~~~Pv~irl~r 624 (784)
.+++.+-.+..- .|.+. ..+..++..|..-..+||+|-+|.
T Consensus 417 ~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 417 NHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred hHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 788876655433 44452 344555555544345899999984
No 281
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=63.69 E-value=77 Score=30.97 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHH-HHhhcCCCEEEEEECCC
Q 003948 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMN-NAGFLDANLIVVLNDNK 314 (784)
Q Consensus 259 ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln-~A~~~~~nlivIv~dN~ 314 (784)
++.|.|+|+ .| -+.+++.. ..+ -..+++.+. .++.++.|++++....+
T Consensus 52 vg~A~GlA~----~G-~~pi~~~~--~~f-~~ra~dqi~~~~a~~~~pv~~~~~~~g 100 (156)
T cd07033 52 VGIAAGLAL----HG-LKPFVSTF--SFF-LQRAYDQIRHDVALQNLPVKFVGTHAG 100 (156)
T ss_pred HHHHHHHHH----CC-CeEEEEEC--HHH-HHHHHHHHHHHHhccCCCeEEEEECCc
Confidence 556666664 44 34444444 333 346888887 77888899999998665
No 282
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=63.11 E-value=62 Score=31.42 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCC
Q 003948 262 GLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (784)
Q Consensus 262 AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~ 314 (784)
|.+||-+..+.+.. .+++..|-|..+ ...+|-.|.....|+++|+-+-.
T Consensus 53 A~~~A~g~~r~~~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~ 101 (160)
T cd07034 53 AAEAAIGASAAGAR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRP 101 (160)
T ss_pred HHHHHHHHHhhCCc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCC
Confidence 33444444443433 455556777775 55778888877799999996544
No 283
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=61.95 E-value=12 Score=34.90 Aligned_cols=41 Identities=44% Similarity=0.682 Sum_probs=23.1
Q ss_pred hhhcCCeEEe-ecCCCCH-HHHHHHHHHhhcCCCCCcEEEEEEe
Q 003948 387 FEELGLYYIG-PVDGHNV-EDLVTIFQRVKEMPAPGPVLIHVVT 428 (784)
Q Consensus 387 fea~G~~~i~-~vDGhd~-~~l~~al~~ak~~~~~~P~lI~v~T 428 (784)
++++|+.|+. ||++.++ ++-.++|.++.+. .++|+++||+|
T Consensus 53 a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~s 95 (110)
T PF04273_consen 53 AEALGLQYVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRS 95 (110)
T ss_dssp HHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SC
T ss_pred HHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCC
Confidence 7888886643 6776555 4445555555543 57899999976
No 284
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=61.84 E-value=28 Score=29.84 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=45.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh-ccCCeEEEEcCCCcCCcHHHHHHHH
Q 003948 651 EGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGSHVCHFL 726 (784)
Q Consensus 651 eG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~-~~~~~vVvvEe~~~gG~gs~V~~~l 726 (784)
+..+|+|.+ -+.-..|.+|.+.|++.|++.+.+|+..- -+.+.+.+.. ..+-++|++.....||+. .|..+|
T Consensus 6 ~~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~~--~~~~~~~~~~g~~~vP~i~i~g~~igG~~-~l~~~l 78 (79)
T TIGR02190 6 KPESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGND--ARGRSLRAVTGATTVPQVFIGGKLIGGSD-ELEAYL 78 (79)
T ss_pred CCCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCCC--hHHHHHHHHHCCCCcCeEEECCEEEcCHH-HHHHHh
Confidence 445676655 56778899999999999999999998531 1222333322 233456667655578874 444444
No 285
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=61.63 E-value=65 Score=39.22 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHH-HHHhhcCCCEEEEEECCCC
Q 003948 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM-NNAGFLDANLIVVLNDNKQ 315 (784)
Q Consensus 259 ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAl-n~A~~~~~nlivIv~dN~~ 315 (784)
++.|.|||+ .| -+++++.+. .+.. .+++.+ +.++..++|++++.+.-|.
T Consensus 374 vg~AaGlA~----~G-~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~ 423 (641)
T PRK12571 374 VTFAAGLAA----AG-LKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGL 423 (641)
T ss_pred HHHHHHHHH----CC-CEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCc
Confidence 567777775 23 244555544 4554 788887 5578889999999977774
No 286
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=61.18 E-value=51 Score=31.78 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEE-cCCcccchhhHHHHHHHhhcCCCEEEEEECCC
Q 003948 258 SISAGLGMAVARDILGKNNNVISVI-GDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (784)
Q Consensus 258 ~ls~AvG~AlA~~~~g~~~~Vv~vi-GDGal~eG~~~EAln~A~~~~~nlivIv~dN~ 314 (784)
+..+|.|.+.+. .+.-++++. |=|.++ ..+++..|...+.|+++|.-+..
T Consensus 46 A~~~A~g~~~~~----~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~ 96 (155)
T cd07035 46 AVGMADGYARAT----GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRP 96 (155)
T ss_pred HHHHHHHHHHHH----CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCc
Confidence 344555555442 223344444 555553 66889999888999999986655
No 287
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=59.46 E-value=1.2e+02 Score=36.15 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCC
Q 003948 274 KNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (784)
Q Consensus 274 ~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~ 314 (784)
.|=.|.++-+|-+.+ -++.||+.+|..-+.|+++-+|--.
T Consensus 225 tDIvVLVVAadDGVm-pQT~EaIkhAk~A~VpiVvAinKiD 264 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVM-PQTLEAIKHAKSANVPIVVAINKID 264 (683)
T ss_pred ccEEEEEEEccCCcc-HhHHHHHHHHHhcCCCEEEEEeccC
Confidence 356677777666555 3789999999998899888776543
No 288
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=59.29 E-value=34 Score=34.44 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=63.0
Q ss_pred hCCCCeeeccc-cH-HHHHHHHHHHHhc-CCeeEEEec--HhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCC---C--C
Q 003948 504 RFPDRCFDVGI-AE-QHAVTFAAGLASE-GVKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV---G--A 572 (784)
Q Consensus 504 ~~p~R~~d~GI-aE-~~~vg~AaGlA~~-G~~P~~~ty--s~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~~---G--~ 572 (784)
..|.+++..+- .= -..++.|.|+++. .-++++.+. ..|+.-.-| + ..+...++|+++++ ...|+. . .
T Consensus 38 ~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f~~~~~e-l-~ta~~~~~p~~ivV~nN~~~~~~~~~~~ 115 (183)
T cd02005 38 PKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQE-L-STMIRYGLNPIIFLINNDGYTIERAIHG 115 (183)
T ss_pred CCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchhhccHHH-H-HHHHHhCCCCEEEEEECCCcEEEEEecc
Confidence 34677776531 11 1234456666654 235565553 446433322 3 34666678877666 444431 0 0
Q ss_pred CCCCcCc--hhhHh-HhccCC---CcEEEecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 573 DGPTHCG--AFDVT-FMSCLP---NMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 573 dG~THq~--~~dla-~lr~iP---n~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
.+..+.. ..|.. +..+.- ++..+...++.|+...++++++..++|++|-.
T Consensus 116 ~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev 171 (183)
T cd02005 116 PEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEV 171 (183)
T ss_pred CCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1111111 12322 223322 36778889999999999999863578988754
No 289
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=59.00 E-value=34 Score=38.17 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcC-CeeEEEecHh--HHHH-HHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcC--chhhHhHh-c--c
Q 003948 518 HAVTFAAGLASEG-VKPFCAIYSS--FLQR-GYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDVTFM-S--C 588 (784)
Q Consensus 518 ~~vg~AaGlA~~G-~~P~~~tys~--Fl~r-a~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq--~~~dla~l-r--~ 588 (784)
.++|+|.|..+.+ -+++++++.+ |.+- ..+. ++.++..++||++++...++ +...+++. ...|++-. . .
T Consensus 130 ~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~Ea-L~tA~~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~a~a~G 207 (341)
T TIGR03181 130 HAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEA-LNFAGVFKAPVVFFVQNNQW-AISVPRSKQTAAPTLAQKAIAYG 207 (341)
T ss_pred HHHhHHHHHHhhCCCCEEEEEecCCccccChHHHH-HHHHhccCCCEEEEEECCCC-ccccchhhhhCCcCHHHHHhhCC
Confidence 3444444444333 3566666544 4322 2343 37788999999999865553 21112221 12233221 1 3
Q ss_pred CCCcEEEecCCHHHHHH----HHHHHHHhCCCCeEEEc
Q 003948 589 LPNMVVMAPSDEAELMH----MVATAAVIDDRPSCFRF 622 (784)
Q Consensus 589 iPn~~V~~Psd~~E~~~----~l~~A~~~~~~Pv~irl 622 (784)
+|++.| .-.|..++.. +++.+.. .++|++|-.
T Consensus 208 ~~~~~V-dg~d~~av~~a~~~A~~~a~~-~~gP~lIev 243 (341)
T TIGR03181 208 IPGVQV-DGNDVLAVYAVTKEAVERARS-GGGPTLIEA 243 (341)
T ss_pred CCEEEE-CCCCHHHHHHHHHHHHHHHHc-CCCCEEEEE
Confidence 444443 3334444344 4444433 578998754
No 290
>PLN02790 transketolase
Probab=58.41 E-value=42 Score=40.90 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcCc-hhhH-hHhccCCCcEEEec----CCHHHHHHHHHHHHHhCCC
Q 003948 544 RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAP----SDEAELMHMVATAAVIDDR 616 (784)
Q Consensus 544 ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq~-~~dl-a~lr~iPn~~V~~P----sd~~E~~~~l~~A~~~~~~ 616 (784)
.++|.+ +.++.+++| ++++.+.-++ ..+|++... .+++ ..++.+ ||.++.+ .|..++..+++.|....++
T Consensus 153 ~~~EAl-~~A~~~~L~nli~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~ 229 (654)
T PLN02790 153 ISNEAA-SLAGHWGLGKLIVLYDDNHI-SIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKEAKAVTDK 229 (654)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEecCCc-cccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 445554 778889997 6777776664 334444322 2333 355665 8999988 5778888888887544578
Q ss_pred CeEEEcC
Q 003948 617 PSCFRFP 623 (784)
Q Consensus 617 Pv~irl~ 623 (784)
|++|...
T Consensus 230 P~lI~~~ 236 (654)
T PLN02790 230 PTLIKVT 236 (654)
T ss_pred eEEEEEE
Confidence 9988653
No 291
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=58.33 E-value=24 Score=29.38 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=41.0
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhc-c-CCeEEEEcCCCcCCcHHH
Q 003948 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-E-HEILITVEEGSVGGFGSH 721 (784)
Q Consensus 655 vtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~-~-~~~vVvvEe~~~gG~gs~ 721 (784)
|+|.+. +.-..|.+|.+.|++.||..+.+|+..- |-..+.+.+... . .-+.|+++....||+.+.
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~ 68 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDVHIGGCDDL 68 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCEEEeChHHH
Confidence 344432 4457899999999999999999998642 111122222222 1 346778887667887643
No 292
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=58.09 E-value=1.5e+02 Score=35.20 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=71.0
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCC--------
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGP-------- 575 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~-------- 575 (784)
|++. ...|++++.+|.|.|.. | +++|. +..+.+..+..-+ ..+...+.||+++...... .+.+-.
T Consensus 41 ~~v~-~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 117 (539)
T TIGR03393 41 CWVG-CANELNAAYAADGYARCKG-AAALLTTFGVGELSAINGI-AGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDG 117 (539)
T ss_pred cEec-cCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHhhHH-HHHhhccCCEEEEECCCCcchhhcCceeeeecCCC
Confidence 5555 48999999999999985 7 56665 5777765665554 4566779999988632221 000001
Q ss_pred CcCchhhHhHhccCCCcE-EEecCC-HHHHHHHHHHHHHhCCCCeEEEcCCCC
Q 003948 576 THCGAFDVTFMSCLPNMV-VMAPSD-EAELMHMVATAAVIDDRPSCFRFPRGN 626 (784)
Q Consensus 576 THq~~~dla~lr~iPn~~-V~~Psd-~~E~~~~l~~A~~~~~~Pv~irl~r~~ 626 (784)
.+|.. ..+++.+--.. ++.|.+ +.++..+++.|+. ..+|++|-+|+..
T Consensus 118 ~~q~~--~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~-~~gPv~l~iP~Dv 167 (539)
T TIGR03393 118 DFRHF--YRMAAEVTVAQAVLTEQNATAEIDRVITTALR-ERRPGYLMLPVDV 167 (539)
T ss_pred chHHH--HHHhhceEEEEEEeChhhhHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 12221 23333322111 235666 7888899999986 5689999998764
No 293
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=57.63 E-value=1.3e+02 Score=29.77 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHh-hcCCCEEEEEECCC
Q 003948 257 TSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAG-FLDANLIVVLNDNK 314 (784)
Q Consensus 257 ~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~-~~~~nlivIv~dN~ 314 (784)
.+.++|.|.+++ ....++|+.+=|- |...-++..|. ....|+++|+-.-+
T Consensus 45 ~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg 95 (157)
T TIGR03845 45 EGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRG 95 (157)
T ss_pred HHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 345555555532 3556788888773 35666777777 67799999995554
No 294
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=56.38 E-value=59 Score=32.32 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEEC
Q 003948 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLND 312 (784)
Q Consensus 259 ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~d 312 (784)
.-+|-|.|.+ .|+...+++..|=|..+ ..-++..|...+.||++|.-+
T Consensus 48 ~~mAdgyar~---sg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~ 95 (162)
T cd07037 48 AFFALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTAD 95 (162)
T ss_pred HHHHHHHHHh---hCCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECC
Confidence 3455555543 34344444444666665 445677777788999999843
No 295
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=55.70 E-value=35 Score=37.42 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=57.3
Q ss_pred HHHHHHHHh----cCCeeEEEe-cHhHH---HHHHHHHHHHhhcCCCCEEEEeeCCCC-CC---CCCCCcCchhhHhHhc
Q 003948 520 VTFAAGLAS----EGVKPFCAI-YSSFL---QRGYDQVVHDVDLQKLPVRFAMDRAGL-VG---ADGPTHCGAFDVTFMS 587 (784)
Q Consensus 520 vg~AaGlA~----~G~~P~~~t-ys~Fl---~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G---~dG~THq~~~dla~lr 587 (784)
+.+|+|.|+ .|.+.++.. +.+-. -.-+|. +|.++..++||+|++..-++ .. .....-..+.+.+-.-
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Ea-lN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~ 185 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEA-LNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGY 185 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHH-HHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGT
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHH-HHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhcc
Confidence 455556665 354444443 43321 122333 48899999999999954442 11 1111111233444444
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEc
Q 003948 588 CLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (784)
Q Consensus 588 ~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl 622 (784)
.+|++. +.=.|+.++...++.|++ ..++|++|-.
T Consensus 186 gip~~~-VDG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 186 GIPGIR-VDGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp TSEEEE-EETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred CCcEEE-ECCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 567664 477899999999998887 3467988754
No 296
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=53.52 E-value=1.1e+02 Score=37.41 Aligned_cols=50 Identities=8% Similarity=0.248 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHH-HHHhhcCCCEEEEEECCCC
Q 003948 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM-NNAGFLDANLIVVLNDNKQ 315 (784)
Q Consensus 258 ~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAl-n~A~~~~~nlivIv~dN~~ 315 (784)
.++.|.|||+ .| -+++++++. .+.. -+++-+ +.++..++|++++++..+.
T Consensus 410 ~vg~AaGLA~----~G-~kPvv~~fs--~Fl~-RA~DQI~~dval~~lpVv~v~~~aG~ 460 (677)
T PLN02582 410 AVTFAAGLAC----EG-LKPFCAIYS--SFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGL 460 (677)
T ss_pred HHHHHHHHHH----CC-CeEEEEecH--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 3566667665 34 355666543 4543 567654 6667888999999998775
No 297
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=53.32 E-value=59 Score=27.93 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=39.3
Q ss_pred cEEEEEechh-HHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCC
Q 003948 654 RVAILGYGSI-VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG 713 (784)
Q Consensus 654 dvtIva~Gs~-v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~ 713 (784)
++.|++.+.. ...|++.++.|++.|+++.+ |.+. +.+....-.....+.+.+|++.+.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcc
Confidence 5677777654 57899999999999999977 4443 444444333333456677777754
No 298
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=52.38 E-value=1e+02 Score=37.46 Aligned_cols=49 Identities=10% Similarity=0.266 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHH-HHHhhcCCCEEEEEECCCC
Q 003948 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM-NNAGFLDANLIVVLNDNKQ 315 (784)
Q Consensus 259 ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAl-n~A~~~~~nlivIv~dN~~ 315 (784)
++.|.|||+ .| -+++++++ +.+.. -+++-+ +.++..++|++++++..|.
T Consensus 412 Vg~AaGLA~----~G-~rPvv~~f--s~Fl~-RA~DQI~~dva~~~lpV~~v~~~aG~ 461 (641)
T PLN02234 412 VTFAAGLAC----EG-LKPFCTIY--SSFMQ-RAYDQVVHDVDLQKLPVRFAIDRAGL 461 (641)
T ss_pred HHHHHHHHH----CC-CeEEEEeh--HHHHH-HHHHHHHHHHhhcCCCEEEEEeCCcc
Confidence 556666665 34 24455554 34433 566665 4567788999999988874
No 299
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=51.29 E-value=64 Score=29.15 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=45.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh----ccCCeEEEEcCCCcCCcHHH
Q 003948 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA----NEHEILITVEEGSVGGFGSH 721 (784)
Q Consensus 653 ~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~----~~~~~vVvvEe~~~gG~gs~ 721 (784)
.+|+|.+. +.-..|.+|.+.|.+.|++..++|+.. .|--.+....+. ..+-+.|++.....||+...
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl 78 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENV 78 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHH
Confidence 46777776 566889999999999999999999863 221122222222 23457788887668998743
No 300
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=50.07 E-value=59 Score=35.33 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=48.0
Q ss_pred eeEEEecHh--HHHH-HHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcC--chhhHhHhc---cCCCcEEEecCCHHHH
Q 003948 532 KPFCAIYSS--FLQR-GYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDVTFMS---CLPNMVVMAPSDEAEL 603 (784)
Q Consensus 532 ~P~~~tys~--Fl~r-a~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq--~~~dla~lr---~iPn~~V~~Psd~~E~ 603 (784)
+++++++.+ |.+- .++. ++.++..++|+++++...++ +...++.. ...|++-.. .+|++. +.=.|+.++
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~-l~~A~~~~lPvi~vv~NN~~-~i~~~~~~~~~~~~~~~~a~a~G~~~~~-Vdg~d~~~v 203 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEA-LNFAALWKLPVIFVCENNGY-AISTPTSRQTAGTSIADRAAAYGIPGIR-VDGNDVLAV 203 (293)
T ss_pred CEEEEEeCCCccccchHHHH-HHHHHhhCCCEEEEEeeCCe-eccCCHHHHhCCccHHHHHHhCCCCEEE-ECCCCHHHH
Confidence 445555433 4332 2333 47788899999999865553 22222211 122332222 344432 233467888
Q ss_pred HHHHHHHHH---hCCCCeEEEc
Q 003948 604 MHMVATAAV---IDDRPSCFRF 622 (784)
Q Consensus 604 ~~~l~~A~~---~~~~Pv~irl 622 (784)
...++.|++ ..++|++|-.
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 888887764 3467988755
No 301
>PRK05899 transketolase; Reviewed
Probab=49.89 E-value=1.4e+02 Score=36.14 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=53.4
Q ss_pred eeEEEecH--hHHH-HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcC-chhhH-hHhccCCCcEEEecC--CHHHH
Q 003948 532 KPFCAIYS--SFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAFDV-TFMSCLPNMVVMAPS--DEAEL 603 (784)
Q Consensus 532 ~P~~~tys--~Fl~-ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq-~~~dl-a~lr~iPn~~V~~Ps--d~~E~ 603 (784)
++++++.. .|.. ..++.+ +.++..++| ++++.+..++ +.++++.. ...|+ ..++.+ |+.++.-. |..++
T Consensus 151 ~~v~~v~GDG~~~~g~~~Eal-~~A~~~~L~~li~v~dnN~~-~~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l 227 (624)
T PRK05899 151 HYTYVLCGDGDLMEGISHEAC-SLAGHLKLGNLIVIYDDNRI-SIDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAI 227 (624)
T ss_pred CeEEEEECcchhhchHHHHHH-HHHHHhCCCCEEEEEECCCC-cccccccccccccHHHHhccC-CCeEEEECCCCHHHH
Confidence 44555543 3431 224443 567788997 6666666664 33333322 12333 344554 78877767 89999
Q ss_pred HHHHHHHHHhCCCCeEEEcC
Q 003948 604 MHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 604 ~~~l~~A~~~~~~Pv~irl~ 623 (784)
..+++.|.. .++|++|...
T Consensus 228 ~~al~~a~~-~~~P~vI~v~ 246 (624)
T PRK05899 228 DAAIEEAKA-STKPTLIIAK 246 (624)
T ss_pred HHHHHHHHh-cCCCEEEEEE
Confidence 999999876 4689887654
No 302
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=49.38 E-value=86 Score=32.67 Aligned_cols=93 Identities=24% Similarity=0.289 Sum_probs=56.2
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCC---cEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhc
Q 003948 653 DRVAILGYGSIVQQCVLAANMLKSQDI---SVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLS 729 (784)
Q Consensus 653 ~dvtIva~Gs~v~~aleAae~L~~~GI---~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~ 729 (784)
.++.||--=|.++.|. .+| |+ ++.++++. +-+.+.++..+....+++++.+... --.+|+.+|.++
T Consensus 95 ~~v~iIPgiSS~q~a~---ARl---g~~~~~~~~islH---gr~~~~l~~~~~~~~~~vil~~~~~--~P~~IA~~L~~~ 163 (210)
T COG2241 95 EEVEIIPGISSVQLAA---ARL---GWPLQDTEVISLH---GRPVELLRPLLENGRRLVILTPDDF--GPAEIAKLLTEN 163 (210)
T ss_pred cceEEecChhHHHHHH---HHh---CCChHHeEEEEec---CCCHHHHHHHHhCCceEEEeCCCCC--CHHHHHHHHHhC
Confidence 3566665334444332 223 33 35566655 5667888877766667777776542 256899999999
Q ss_pred CCCCCCcc-eEEeecCcccccCCCHHHH
Q 003948 730 GILDGPLK-LRSMVLPDRYIDHGSPADQ 756 (784)
Q Consensus 730 g~~~~~~~-~~~lg~~d~f~~~g~~~el 756 (784)
|+.+..+- ..+++.+|+-+..++.++.
T Consensus 164 G~~~~~~~VlE~L~~~~Eri~~~~~~~~ 191 (210)
T COG2241 164 GIGDSRVTVLENLGYPDERITDGTAEDI 191 (210)
T ss_pred CCCCceEEEEcccCCCchhhhcCchhhh
Confidence 97433222 3367777776666665554
No 303
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=48.70 E-value=1.2e+02 Score=30.08 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECC
Q 003948 260 SAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDN 313 (784)
Q Consensus 260 s~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN 313 (784)
-+|-|.|.+ .++-..+++..|=|.++ ..-++..|...+.||++|.-+.
T Consensus 52 ~mA~gyar~---tg~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~ 99 (164)
T cd07039 52 FAASAEAKL---TGKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQV 99 (164)
T ss_pred HHHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCC
Confidence 345555543 34444445555777665 4456777777889999998443
No 304
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=48.00 E-value=44 Score=33.01 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=43.0
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcC
Q 003948 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE 712 (784)
Q Consensus 655 vtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe 712 (784)
++|++-|..-....++++.|++.||.+=.|-+. ..|.+.++.++.+-..++++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence 456777776677788999999999887666654 4688999998877778888875
No 305
>PTZ00089 transketolase; Provisional
Probab=45.84 E-value=1.6e+02 Score=35.93 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcCc-hhhH-hHhccCCCcEEEecC----CHHHHHHHHHHHHHhCCC
Q 003948 544 RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAPS----DEAELMHMVATAAVIDDR 616 (784)
Q Consensus 544 ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq~-~~dl-a~lr~iPn~~V~~Ps----d~~E~~~~l~~A~~~~~~ 616 (784)
.++|.+ +.++..++| ++++.+.-+. ..+|+++.. .+++ ..++++ ||.++.+. |..++..++..|....++
T Consensus 164 ~~~EAl-~~A~~~~L~nLi~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~ 240 (661)
T PTZ00089 164 VSQEAL-SLAGHLGLEKLIVLYDDNKI-TIDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIEEAKKSKGK 240 (661)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEECCCc-ccccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 445554 678888987 6677776663 345666532 2232 356665 89999884 677788788777654468
Q ss_pred CeEEEcC
Q 003948 617 PSCFRFP 623 (784)
Q Consensus 617 Pv~irl~ 623 (784)
|++|...
T Consensus 241 P~~I~~~ 247 (661)
T PTZ00089 241 PKLIIVK 247 (661)
T ss_pred cEEEEEE
Confidence 9988663
No 306
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=44.57 E-value=58 Score=31.16 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhcCCCcEEEeecccc-CCC-------------cHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHH
Q 003948 663 IVQQCVLAANMLKSQDISVTVADARFC-KPL-------------DTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLT 727 (784)
Q Consensus 663 ~v~~aleAae~L~~~GI~v~VId~~sl-kPl-------------D~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~ 727 (784)
....+..+++.|++.|++++++|++-. .|+ +.+.+.+.+.+.+.+|+.=--+.+++...+..++.
T Consensus 16 t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD 94 (152)
T PF03358_consen 16 TRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFLD 94 (152)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHHH
Confidence 445666777788888999999999976 221 11334555566677666655456888877777664
No 307
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=44.30 E-value=63 Score=28.26 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=38.8
Q ss_pred cEEEEEech----hHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcC
Q 003948 654 RVAILGYGS----IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE 712 (784)
Q Consensus 654 dvtIva~Gs----~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe 712 (784)
+|+|+..|. ....|.+.++.|++.|+.+.+-+ . -..+....-.....+...++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~-~-~~~~~k~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD-S-DKSLGKQIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES-S-SSTHHHHHHHHHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC-C-CCchhHHHHHHhhcCCeEEEEECc
Confidence 578888888 35688999999999999998876 3 233343333333345566777654
No 308
>PRK10638 glutaredoxin 3; Provisional
Probab=43.94 E-value=59 Score=27.99 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=39.0
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh-ccCCeEEEEcCCCcCCcHH
Q 003948 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGS 720 (784)
Q Consensus 654 dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~-~~~~~vVvvEe~~~gG~gs 720 (784)
+|+|.+. ..-..|.+|.+.|++.|+...++|+..-... .+.+.+.. ..+-+.|+++....||+.+
T Consensus 3 ~v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~-~~~l~~~~g~~~vP~i~~~g~~igG~~~ 68 (83)
T PRK10638 3 NVEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDGDAAK-REEMIKRSGRTTVPQIFIDAQHIGGCDD 68 (83)
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 3555443 3346888999999999999999998531111 12222222 2233566676555788853
No 309
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=43.15 E-value=85 Score=29.22 Aligned_cols=58 Identities=21% Similarity=0.149 Sum_probs=38.9
Q ss_pred CcEEEEEec--hh-HHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCC
Q 003948 653 DRVAILGYG--SI-VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG 713 (784)
Q Consensus 653 ~dvtIva~G--s~-v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~ 713 (784)
.++.|++.+ .. ...+++.++.|++.|+++.+ |.+ +.+....-.....+.+.++++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~-d~~--~sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKY-DDS--GSIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEE-eCC--CCHHHHHHHhHhcCCCEEEEECcC
Confidence 378888888 54 56888999999999999987 433 444444333233455667777654
No 310
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=42.86 E-value=1.1e+02 Score=35.92 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=85.3
Q ss_pred HHHHHHHHhh-C-CCEEEEecCCCCCCChh--hhHHhCCC-CeeeccccHHHHHHHHHHHHh-cCCeeEEEecHhHHHHH
Q 003948 472 AESLIKEAET-D-DKIVAIHAAMGGGTGLN--YFQKRFPD-RCFDVGIAEQHAVTFAAGLAS-EGVKPFCAIYSSFLQRG 545 (784)
Q Consensus 472 ~~aL~~l~~~-d-~~iv~i~aD~ggs~gl~--~f~~~~p~-R~~d~GIaE~~~vg~AaGlA~-~G~~P~~~tys~Fl~ra 545 (784)
++.|.+.+.+ + ..|+.+-.| ++|. +.-..+|+ |++.. -.|.++.-+|=|.|. .|.-.++.||+..-.-|
T Consensus 7 G~YL~~RL~qlgi~~iFGVPGD----yNL~lLD~i~~~~~lrWvGn-~NELNaaYAADGYaR~~Gi~alvTTfGVGELSA 81 (557)
T COG3961 7 GDYLFDRLAQLGIKSIFGVPGD----YNLSLLDKIYSVPGLRWVGN-ANELNAAYAADGYARLNGISALVTTFGVGELSA 81 (557)
T ss_pred HHHHHHHHHhcCCceeeeCCCc----ccHHHHHHhhcCCCceeecc-cchhhhhhhhcchhhhcCceEEEEecccchhhh
Confidence 4444444333 2 456666555 4343 22223444 44433 469999999999997 58888899998876667
Q ss_pred HHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhh--H-hHhccCCCc----EEEecCC--HHHHHHHHHHHHHhC
Q 003948 546 YDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD--V-TFMSCLPNM----VVMAPSD--EAELMHMVATAAVID 614 (784)
Q Consensus 546 ~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~d--l-a~lr~iPn~----~V~~Psd--~~E~~~~l~~A~~~~ 614 (784)
++-|.. ..-.++||+.+....-- .+.+-.-||..-| . -|+|.--++ ..+.+.+ +.|...++++++. .
T Consensus 82 ~NGIAG-SYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~-~ 159 (557)
T COG3961 82 LNGIAG-SYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALK-Q 159 (557)
T ss_pred hcccch-hhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHH-h
Confidence 655421 12358999888622211 1222233442211 1 123322222 2344554 7899999999976 7
Q ss_pred CCCeEEEcCCC
Q 003948 615 DRPSCFRFPRG 625 (784)
Q Consensus 615 ~~Pv~irl~r~ 625 (784)
.+|+||.+|-.
T Consensus 160 ~RPvYI~lP~d 170 (557)
T COG3961 160 RRPVYIGLPAD 170 (557)
T ss_pred cCCeEEEcchH
Confidence 89999999864
No 311
>PRK12754 transketolase; Reviewed
Probab=41.55 E-value=1.7e+02 Score=35.77 Aligned_cols=76 Identities=18% Similarity=0.162 Sum_probs=46.8
Q ss_pred HHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcCch-hhH-hHhccCCCcEEEe---cCCHHHHHHHHHHHHHhCCCCe
Q 003948 545 GYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCGA-FDV-TFMSCLPNMVVMA---PSDEAELMHMVATAAVIDDRPS 618 (784)
Q Consensus 545 a~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq~~-~dl-a~lr~iPn~~V~~---Psd~~E~~~~l~~A~~~~~~Pv 618 (784)
.+|.+ +.++..+|| ++++.+.-++ ..+|+|.... +++ ..+++. ||.++. =.|..++..++..|....++|+
T Consensus 163 ~~EA~-~~A~~~kL~nLi~ivD~N~~-~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt 239 (663)
T PRK12754 163 SHEVC-SLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEARAVTDKPS 239 (663)
T ss_pred HHHHH-HHHHHhCCCCEEEEEEcCCC-ccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHHHhcCCCCE
Confidence 34544 678889999 5677776664 4566665422 333 234443 776654 3456666666666654457899
Q ss_pred EEEcC
Q 003948 619 CFRFP 623 (784)
Q Consensus 619 ~irl~ 623 (784)
+|...
T Consensus 240 ~I~~~ 244 (663)
T PRK12754 240 LLMCK 244 (663)
T ss_pred EEEEE
Confidence 98764
No 312
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=41.14 E-value=51 Score=27.86 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh----ccCCeEEEEcCCCcCCcHHHH
Q 003948 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA----NEHEILITVEEGSVGGFGSHV 722 (784)
Q Consensus 662 s~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~----~~~~~vVvvEe~~~gG~gs~V 722 (784)
..-..|.+|.+.|++.|+..+.+|+.. +.+...++. ..+-+.|++++...||+.+..
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~----~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~ 67 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDG----DPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLY 67 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecC----CHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHH
Confidence 445789999999999999999999863 233333322 223467888876689987553
No 313
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=39.00 E-value=1.9e+02 Score=35.39 Aligned_cols=49 Identities=16% Similarity=0.061 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCC
Q 003948 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (784)
Q Consensus 259 ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~ 314 (784)
+++|.|||+. +.-.++++. -..+.. .+++++..++..++|+++|.-..+
T Consensus 409 v~~AaGlA~~----gG~~p~~~t--f~~F~~-r~~~~ir~~a~~~lpV~~v~th~g 457 (653)
T TIGR00232 409 GAIMNGIALH----GGFKPYGGT--FLMFVD-YARPAIRLAALMKLPVIYVYTHDS 457 (653)
T ss_pred HHHHHHHHHc----CCCeEEEEE--hHHHHH-HHHHHHHHHHhcCCCEEEEEeCCc
Confidence 5667777762 212233322 335554 778999999888999999997665
No 314
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=38.38 E-value=2.9e+02 Score=34.09 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHH-HhhcCCCEEEEEECCCC
Q 003948 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNN-AGFLDANLIVVLNDNKQ 315 (784)
Q Consensus 258 ~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~-A~~~~~nlivIv~dN~~ 315 (784)
.++.|.|||. .| -++++++.. .+.. -+|+-+.+ ++..++|+.++++.-|.
T Consensus 435 aVt~AAGLA~----~G-~kPvv~iys--tFlq-RAyDQI~~Dval~~lpV~~vid~aGl 485 (701)
T PLN02225 435 AVTFSAGLSS----GG-LKPFCIIPS--AFLQ-RAYDQVVHDVDRQRKAVRFVITSAGL 485 (701)
T ss_pred HHHHHHHHHH----CC-CEEEEEeeh--hHHH-HHHHHHHHHHHhhcCCceEEEECCcc
Confidence 3566667764 34 366777774 5654 66776655 67788999999987664
No 315
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=37.64 E-value=1.4e+02 Score=25.63 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=43.4
Q ss_pred EEEEEechhHHHHHHHHHHHhc-----CCCcEEEeeccccCCCcHHHHHHHhc---cCCeEEEEcCCCcCCcHHHHHHHH
Q 003948 655 VAILGYGSIVQQCVLAANMLKS-----QDISVTVADARFCKPLDTDLIRQLAN---EHEILITVEEGSVGGFGSHVCHFL 726 (784)
Q Consensus 655 vtIva~Gs~v~~aleAae~L~~-----~GI~v~VId~~slkPlD~e~i~~~~~---~~~~vVvvEe~~~gG~gs~V~~~l 726 (784)
|+|.+. +.-..|.+|.+.|++ .|+....+|+.. .+...+.+.+... .+-+.|+++....||+. .+.+++
T Consensus 3 v~iy~~-~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~-~~~~~~ 79 (85)
T PRK11200 3 VVIFGR-PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQKHIGGCT-DFEAYV 79 (85)
T ss_pred EEEEeC-CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHH-HHHHHH
Confidence 444432 335677778777777 799999999874 2323444554443 33467778766678875 444444
Q ss_pred Hh
Q 003948 727 TL 728 (784)
Q Consensus 727 ~~ 728 (784)
.+
T Consensus 80 ~~ 81 (85)
T PRK11200 80 KE 81 (85)
T ss_pred HH
Confidence 43
No 316
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=37.25 E-value=1.5e+02 Score=33.45 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=44.1
Q ss_pred HHHhhcCCCCEEEEeeCCCCCCCCCCC--cCchhhHh-HhccCCCcEEEecCCHHHHHHHHHHHHH--hCCCCeEEEcC
Q 003948 550 VHDVDLQKLPVRFAMDRAGLVGADGPT--HCGAFDVT-FMSCLPNMVVMAPSDEAELMHMVATAAV--IDDRPSCFRFP 623 (784)
Q Consensus 550 ~~~~a~~~lpV~~v~~~~G~~G~dG~T--Hq~~~dla-~lr~iPn~~V~~Psd~~E~~~~l~~A~~--~~~~Pv~irl~ 623 (784)
+|.++..++|+++++...++ +..-++ ++...++. ....+|++.| .=.|..++..++..|++ +.++|++|-..
T Consensus 181 ln~A~~~~lPvvfvveNN~~-aist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~~gP~lIe~~ 257 (362)
T PLN02269 181 LNIAALWDLPVIFVCENNHY-GMGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALSNGPIVLEMD 257 (362)
T ss_pred HHHhhccCcCEEEEEeCCCE-eccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 37889999999999976663 211121 11122221 1224666644 66678888888887765 23789988653
No 317
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=36.20 E-value=3.3e+02 Score=31.09 Aligned_cols=82 Identities=13% Similarity=0.240 Sum_probs=57.7
Q ss_pred eEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccC---CeEEEEcCCCcCCc---HH
Q 003948 647 RILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH---EILITVEEGSVGGF---GS 720 (784)
Q Consensus 647 ~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~---~~vVvvEe~~~gG~---gs 720 (784)
.++.+|.+|.++..|.--+.--+.++ ..|.++.+++..+=.|+|.+.+.+.+++. +.|.++..-.+.|. -.
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia~---~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIAE---RYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHHH---HhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 45667889999999998887655554 45899999999999999999999988743 33343432233444 34
Q ss_pred HHHHHHHhcCC
Q 003948 721 HVCHFLTLSGI 731 (784)
Q Consensus 721 ~V~~~l~~~g~ 731 (784)
+|+..+.+.+.
T Consensus 152 ~I~~~~k~~g~ 162 (383)
T COG0075 152 EIAKAAKEHGA 162 (383)
T ss_pred HHHHHHHHcCC
Confidence 56666666554
No 318
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=36.16 E-value=1.4e+02 Score=24.73 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=43.3
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh-ccCCeEEEEcCCCcCCcHHHHHHHH
Q 003948 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGSHVCHFL 726 (784)
Q Consensus 654 dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~-~~~~~vVvvEe~~~gG~gs~V~~~l 726 (784)
+|+|.+ -+.-..|.+|.+.|++.|+..+.+|+.. .+ +.+.+.+.. ..+-+.|+++....||+. +|.++|
T Consensus 2 ~v~lys-~~~Cp~C~~ak~~L~~~~i~~~~~~v~~-~~-~~~~~~~~~g~~~vP~ifi~g~~igg~~-~l~~~l 71 (72)
T cd03029 2 SVSLFT-KPGCPFCARAKAALQENGISYEEIPLGK-DI-TGRSLRAVTGAMTVPQVFIDGELIGGSD-DLEKYF 71 (72)
T ss_pred eEEEEE-CCCCHHHHHHHHHHHHcCCCcEEEECCC-Ch-hHHHHHHHhCCCCcCeEEECCEEEeCHH-HHHHHh
Confidence 344444 4666789999999999999999999853 22 233333322 223466777766678854 444443
No 319
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.66 E-value=1.3e+02 Score=25.30 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=34.9
Q ss_pred cEEEEEechh-HHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhc-cCCeEEEEcC
Q 003948 654 RVAILGYGSI-VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEE 712 (784)
Q Consensus 654 dvtIva~Gs~-v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~-~~~~vVvvEe 712 (784)
++.|++.+.. ...|++.++.|++.|+.+.+.... +.+ .+.+....+ ....++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~-~~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKL-KKQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCH-HHHHHHHHHcCCCEEEEEcH
Confidence 6778877764 468899999999999988774432 233 233333222 3345566654
No 320
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=35.64 E-value=1.7e+02 Score=32.67 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=50.4
Q ss_pred CCeeEE-EecHhHH---HHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcC-chhhHh-Hhc--cCCCcEEEecCCHH
Q 003948 530 GVKPFC-AIYSSFL---QRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC-GAFDVT-FMS--CLPNMVVMAPSDEA 601 (784)
Q Consensus 530 G~~P~~-~tys~Fl---~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq-~~~dla-~lr--~iPn~~V~~Psd~~ 601 (784)
+-..+| +.|.+.. -..+|.+ |++++.+|||+|++-..++ |- |.+|. ..-+.. +.| .|||+.| .=.|.-
T Consensus 185 ~~~~v~~alYGDGAaNQGQ~fEa~-NMA~LW~LP~IFvCENN~y-GM-GTs~~Rasa~teyykRG~yiPGl~V-dGmdvl 260 (394)
T KOG0225|consen 185 REDAVCFALYGDGAANQGQVFEAF-NMAALWKLPVIFVCENNHY-GM-GTSAERASASTEYYKRGDYIPGLKV-DGMDVL 260 (394)
T ss_pred cCCceEEEEeccccccchhHHHHh-hHHHHhCCCEEEEEccCCC-cc-CcchhhhhcChHHHhccCCCCceEE-CCcchh
Confidence 433344 4487764 2445554 8999999999999954432 21 22222 111111 223 4898754 344555
Q ss_pred HHHHHHHHHHH---hCCCCeEEEcC
Q 003948 602 ELMHMVATAAV---IDDRPSCFRFP 623 (784)
Q Consensus 602 E~~~~l~~A~~---~~~~Pv~irl~ 623 (784)
-++.+.++|.+ ..++|.++-+.
T Consensus 261 aVr~a~KfA~~~~~~g~GPilmE~~ 285 (394)
T KOG0225|consen 261 AVREATKFAKKYALEGKGPILMEMD 285 (394)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 55566666654 34789887543
No 321
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=35.31 E-value=2.3e+02 Score=28.79 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHhc-CCCcEEEeeccccCCCcHHHH---------------HHHhccCCeEEEEcCCCcCCcHHHHHH
Q 003948 661 GSIVQQCVLAANMLKS-QDISVTVADARFCKPLDTDLI---------------RQLANEHEILITVEEGSVGGFGSHVCH 724 (784)
Q Consensus 661 Gs~v~~aleAae~L~~-~GI~v~VId~~slkPlD~e~i---------------~~~~~~~~~vVvvEe~~~gG~gs~V~~ 724 (784)
|+.-..|..+++.+++ .|+++++++++...| .+.. .+.+...+.||+.=--+.|++...+..
T Consensus 13 G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty~g~~~~~lk~ 90 (200)
T PRK03767 13 GHIETMAEAVAEGAREVAGAEVTIKRVPETVP--EEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRFGNMAGQMRN 90 (200)
T ss_pred CHHHHHHHHHHHHHhhcCCcEEEEEeccccCC--HHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecccCCCchHHHHH
Confidence 4455667777888887 899999999974333 2111 233445555555444346888888888
Q ss_pred HHHhc
Q 003948 725 FLTLS 729 (784)
Q Consensus 725 ~l~~~ 729 (784)
++...
T Consensus 91 fld~~ 95 (200)
T PRK03767 91 FLDQT 95 (200)
T ss_pred HHHHh
Confidence 88654
No 322
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=35.19 E-value=90 Score=31.22 Aligned_cols=53 Identities=25% Similarity=0.456 Sum_probs=37.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEc
Q 003948 651 EGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVE 711 (784)
Q Consensus 651 eG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvE 711 (784)
+|++++||+.|.++... +++.|.++|.++.+++-+ .+.+.+.++....||+.-
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~------~~~l~~~l~~aDiVIsat 95 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSK------TKNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECC------chhHHHHHhhCCEEEEcC
Confidence 36789999999886643 355677789888888854 245566777776666544
No 323
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.15 E-value=1.4e+02 Score=25.91 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=37.9
Q ss_pred cEEEEEech----hHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCC
Q 003948 654 RVAILGYGS----IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG 713 (784)
Q Consensus 654 dvtIva~Gs----~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~ 713 (784)
+++|+..+. ....|++.++.|++.|+++.+ |.+. +.+....-.....+.+.++++-+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccchhHHHhcCCCEEEEECCc
Confidence 467777665 457889999999999999977 5442 344444333333456667777644
No 324
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=35.06 E-value=1.4e+02 Score=33.36 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=47.1
Q ss_pred CeeEEEecHh--HHH-HHHHHHHHHhhcCCCCEEEEeeCCCC-CCC--CCCCcC-chhhHhHhccCCCcEEEecCCHHHH
Q 003948 531 VKPFCAIYSS--FLQ-RGYDQVVHDVDLQKLPVRFAMDRAGL-VGA--DGPTHC-GAFDVTFMSCLPNMVVMAPSDEAEL 603 (784)
Q Consensus 531 ~~P~~~tys~--Fl~-ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~--dG~THq-~~~dla~lr~iPn~~V~~Psd~~E~ 603 (784)
-+++++++.+ |.+ ..++. ++.++..++|+++++..-++ .+. ...+.. ...+.+-.-.+|++.| .=.|..++
T Consensus 157 ~~vvv~~~GDGa~~~G~~~Ea-ln~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~V-dg~d~~av 234 (341)
T CHL00149 157 LRVTACFFGDGTTNNGQFFEC-LNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEV-DGMDVLAV 234 (341)
T ss_pred CCEEEEEeCCchhhhcHHHHH-HHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEE-eCCCHHHH
Confidence 3566666544 331 12233 37788899999999865552 221 001111 1222232334676655 44566655
Q ss_pred HHHHHHHHH---hCCCCeEEEc
Q 003948 604 MHMVATAAV---IDDRPSCFRF 622 (784)
Q Consensus 604 ~~~l~~A~~---~~~~Pv~irl 622 (784)
...++.|++ ..++|++|-.
T Consensus 235 ~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 235 REVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHHhCCCCEEEEE
Confidence 555555544 2467988754
No 325
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=34.78 E-value=4.7e+02 Score=25.97 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=26.3
Q ss_pred hhhc-CCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 003948 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVV 427 (784)
Q Consensus 387 fea~-G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~ 427 (784)
+..+ |+.++.| -|..|+..+++.+.+.+.++|++|-..
T Consensus 133 ~~~iPg~~v~~P---sd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 133 LRSIPGMKVVVP---SDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp HHTSTTEEEEE----SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccccccccC---CCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 4555 7888777 677788888887766334789988654
No 326
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=34.63 E-value=1.4e+02 Score=25.70 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=37.6
Q ss_pred cEEEEEech----hHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCC
Q 003948 654 RVAILGYGS----IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG 713 (784)
Q Consensus 654 dvtIva~Gs----~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~ 713 (784)
++.|+..+. ....|++.++.|++.|+.+.+-+ .. +.+....-.....+...++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHHHHHHHhCCCCEEEEECCC
Confidence 567777775 45788889999999999888744 22 444444333333345677777753
No 327
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=34.57 E-value=3.3e+02 Score=26.76 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcC--CcccchhhHHHHHHHhhcCCCEEEEEECCC
Q 003948 259 ISAGLGMAVARDILGKNNNVISVIGD--GAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (784)
Q Consensus 259 ls~AvG~AlA~~~~g~~~~Vv~viGD--Gal~eG~~~EAln~A~~~~~nlivIv~dN~ 314 (784)
..+|.|.+.+. ++..+|+.-= |.+ ...-++..|...+.|+++|.-+-.
T Consensus 52 ~~~A~g~ar~~-----g~~~v~~~~~GpG~~---n~~~~l~~A~~~~~Pvl~i~g~~~ 101 (172)
T PF02776_consen 52 AFMADGYARAT-----GRPGVVIVTSGPGAT---NALTGLANAYADRIPVLVITGQRP 101 (172)
T ss_dssp HHHHHHHHHHH-----SSEEEEEEETTHHHH---TTHHHHHHHHHTT-EEEEEEEESS
T ss_pred HHHHHHHHHhh-----ccceEEEeecccchH---HHHHHHhhcccceeeEEEEecccc
Confidence 34555555432 3444544433 433 344566667677899999996665
No 328
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=33.87 E-value=86 Score=29.21 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccC
Q 003948 664 VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 704 (784)
Q Consensus 664 v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~ 704 (784)
...|.+|.+.|+++|+..+++|+.. .|++.+.+.+.++..
T Consensus 10 C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~ 49 (113)
T cd03033 10 CANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDL 49 (113)
T ss_pred CHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHc
Confidence 4578889999999999999999985 788998888777643
No 329
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=33.82 E-value=2e+02 Score=30.56 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=37.7
Q ss_pred HHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCC-CCCc-ceEEeecCcccccCCCHHHHHH
Q 003948 695 DLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGIL-DGPL-KLRSMVLPDRYIDHGSPADQLE 758 (784)
Q Consensus 695 e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~-~~~~-~~~~lg~~d~f~~~g~~~elle 758 (784)
+.+....+....+|+++... . -..+++.|.+.|+. +.++ -..+++.+++-+..++.+++.+
T Consensus 155 ~~l~~~~~~~~t~vi~~~~~--~-~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~~l~~ 217 (257)
T PRK15473 155 EQLESFASHQTSMAIFLSVQ--R-IHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAE 217 (257)
T ss_pred hhHHHHhcCCCeEEEECCch--h-HHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHH
Confidence 45666666665777777432 2 56677888777763 2222 3457788887776666666533
No 330
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=33.58 E-value=3.9e+02 Score=30.05 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=24.2
Q ss_pred hhhc-CCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 003948 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHV 426 (784)
Q Consensus 387 fea~-G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v 426 (784)
++.+ |+.++.| .|..|+..+++.+.+ .++|++|..
T Consensus 160 lr~iPnl~V~~P---ad~~e~~~~l~~a~~--~~gPv~ir~ 195 (356)
T PLN02683 160 YSSVPGLKVLAP---YSSEDARGLLKAAIR--DPDPVVFLE 195 (356)
T ss_pred HhcCCCCEEEEe---CCHHHHHHHHHHHHh--CCCcEEEEE
Confidence 4443 7788878 566777777777765 468998864
No 331
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=33.45 E-value=74 Score=26.53 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCC-CcCCcH
Q 003948 664 VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFG 719 (784)
Q Consensus 664 v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~-~~gG~g 719 (784)
-..|.+|.+.|++.|+..+.+|+.. .|-..+.+.+.-..+-++|++++. ..+||-
T Consensus 9 Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 9 CVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHcCCcccCEEEECCCcEEeccC
Confidence 4688899999999999999999874 221222232221123466777654 356664
No 332
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=32.60 E-value=26 Score=36.06 Aligned_cols=27 Identities=48% Similarity=0.764 Sum_probs=20.9
Q ss_pred CCCCCCCCCCccceeccccEEEeeeeeee
Q 003948 11 PPVRGPHSPSRFSYYKNTSLVITQRRHYT 39 (784)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (784)
-|-|-||||.||+- ...||+.|+|.-|
T Consensus 87 LParVpHSPqRFan--tvGlVVEr~R~~t 113 (279)
T KOG3995|consen 87 LPARVPHSPQRFAN--TVGLVVERRRLET 113 (279)
T ss_pred eccCCCCChhhhcc--ceeEEEEeccCCC
Confidence 47899999999973 3468888888543
No 333
>PRK10329 glutaredoxin-like protein; Provisional
Probab=31.47 E-value=1.1e+02 Score=26.53 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=38.5
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh--c-cCCeEEEEcCCCcCCcHH
Q 003948 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA--N-EHEILITVEEGSVGGFGS 720 (784)
Q Consensus 655 vtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~--~-~~~~vVvvEe~~~gG~gs 720 (784)
|+|.+. ..-..|..|.+.|++.||..+.+|+.. |.+...++. . ..-++|++++....||..
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEEEecCCH
Confidence 455443 444788889999999999999999973 333332221 1 223566676655566643
No 334
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=30.55 E-value=3.9e+02 Score=31.28 Aligned_cols=155 Identities=16% Similarity=0.134 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHHHHHhhCCCEEEEecCC----CC--CCChhhhHHhCCCCe-eeccccHHHHHHHHHHHHhc-CC-eeE
Q 003948 464 TLTYTQYFAESLIKEAETDDKIVAIHAAM----GG--GTGLNYFQKRFPDRC-FDVGIAEQHAVTFAAGLASE-GV-KPF 534 (784)
Q Consensus 464 ~~s~~~af~~aL~~l~~~d~~iv~i~aD~----gg--s~gl~~f~~~~p~R~-~d~GIaE~~~vg~AaGlA~~-G~-~P~ 534 (784)
.+++.+++.+.|...+....+++.+-+.+ |. ..|+..--+..|++. .--|-+||+|+-.|.+.|.. .. |-+
T Consensus 6 RlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~~ 85 (617)
T COG3962 6 RLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIY 85 (617)
T ss_pred hhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhceee
Confidence 35677777777776665554433322221 21 224544444445543 24578999999999999985 33 333
Q ss_pred EEe--cHhHHHHHHHHHHHHhh---cCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEec--------CCH
Q 003948 535 CAI--YSSFLQRGYDQVVHDVD---LQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAP--------SDE 600 (784)
Q Consensus 535 ~~t--ys~Fl~ra~dQi~~~~a---~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~P--------sd~ 600 (784)
.++ ..+..... +..++ -.++||.++-. .-+ .-..-|--|++|+..-.. |---.-+.| .-|
T Consensus 86 A~tsSiGPGA~Nm----vTaAalA~~NrlPvLllPg-DvfA~R~PDPVLQQ~E~~~d~~-it~NDcfrPVSRYfDRItRP 159 (617)
T COG3962 86 AVTSSIGPGAANM----VTAAALAHVNRLPVLLLPG-DVFATRQPDPVLQQLEQFGDGT-ITTNDCFRPVSRYFDRITRP 159 (617)
T ss_pred EEecccCCcHHHH----HHHHHHHHhhcCceEeecc-chhcccCCChHHHhhhccccCc-eecccccccHHHHhhhcCCH
Confidence 333 33333222 22333 36899998731 111 222346667766632111 000012333 348
Q ss_pred HHHHHHHHHHHHh-----CCCCeEEEcCC
Q 003948 601 AELMHMVATAAVI-----DDRPSCFRFPR 624 (784)
Q Consensus 601 ~E~~~~l~~A~~~-----~~~Pv~irl~r 624 (784)
+++...+..|++- +-+|+.+-++.
T Consensus 160 EQl~sal~rA~~VmTDPA~~GpvTl~l~Q 188 (617)
T COG3962 160 EQLMSALPRAMRVMTDPADCGPVTLALCQ 188 (617)
T ss_pred HHHHHHHHHHHHHhCChhhcCceEEEech
Confidence 8999999999873 33578887764
No 335
>PRK10824 glutaredoxin-4; Provisional
Probab=30.52 E-value=1.1e+02 Score=28.74 Aligned_cols=69 Identities=16% Similarity=0.038 Sum_probs=45.8
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh-ccCCeEEEEcCCCcCCcHHH
Q 003948 652 GDRVAILGYGS----IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGSH 721 (784)
Q Consensus 652 G~dvtIva~Gs----~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~-~~~~~vVvvEe~~~gG~gs~ 721 (784)
..+|+|++-|+ ....|..|.+.|.+.|++..++|+-. .|--.+.+.+.. ..+-+-|+|.....||....
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~-d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl 87 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCDIV 87 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC-CHHHHHHHHHHhCCCCCCeEEECCEEEcChHHH
Confidence 45788888884 57789999999999999999998852 110112222221 23446677877667987644
No 336
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=29.99 E-value=2.2e+02 Score=29.38 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=37.8
Q ss_pred HHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCC-CCCc-ceEEeecCcccccCCCHHHHHH
Q 003948 694 TDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGIL-DGPL-KLRSMVLPDRYIDHGSPADQLE 758 (784)
Q Consensus 694 ~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~-~~~~-~~~~lg~~d~f~~~g~~~elle 758 (784)
.+.+..+++....+++.+.. ..+ ..+++.|.+.|+. +.++ -..+++.+++-+..++.+++.+
T Consensus 145 ~~~l~~~~~~~~~~vi~~~~--~~~-~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~ 208 (229)
T TIGR01465 145 GEKLADLAKHGATMAIFLSA--HIL-DKVVKELIEGGYSEDTPVAVVYRATWPDEKIVRGTLADLAD 208 (229)
T ss_pred hHHHHHHhcCCCeEEEECcH--HHH-HHHHHHHHHcCcCCCCcEEEEEeCCCCCcEEEEEEHHHHHH
Confidence 44566666666677777754 233 5677777777653 2222 3447788887777666666543
No 337
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=29.81 E-value=1.7e+02 Score=28.36 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=35.8
Q ss_pred EEEEEechhHH----HHHHHHHHHhcCCC--cEEEeeccccCCCcHHHHHHHhccCCeEEEEcCC
Q 003948 655 VAILGYGSIVQ----QCVLAANMLKSQDI--SVTVADARFCKPLDTDLIRQLANEHEILITVEEG 713 (784)
Q Consensus 655 vtIva~Gs~v~----~aleAae~L~~~GI--~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~ 713 (784)
++|+++|+... ....+++.|++... .++++|.-+.- .+.+. .+.+++.+|+|+.-
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~---~~l~~-~l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAG---MEVMF-RARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCH---HHHHH-HhcCCCEEEEEEeC
Confidence 46788888763 45677788876533 47888887653 34333 34466778888763
No 338
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=29.66 E-value=1.6e+02 Score=23.28 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=37.3
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhc-cCCeEEEEcCCCcCCcH
Q 003948 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEEGSVGGFG 719 (784)
Q Consensus 655 vtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~-~~~~vVvvEe~~~gG~g 719 (784)
|+|.+... -..|.+|...|++.++....+|+..-.. -.+.+.+... .+-+++++.+...||+.
T Consensus 2 v~ly~~~~-Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~~~~~igg~~ 65 (72)
T cd02066 2 VVVFSKST-CPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFINGEFIGGYD 65 (72)
T ss_pred EEEEECCC-CHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEecHH
Confidence 34444333 4688889889999999999999864221 1122232222 23346666655568874
No 339
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=29.37 E-value=83 Score=28.79 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhcc
Q 003948 664 VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANE 703 (784)
Q Consensus 664 v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~ 703 (784)
...|.+|.+.|++.||.+..+|+.. .|++.+.+.+.++.
T Consensus 6 C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~ 44 (110)
T PF03960_consen 6 CSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSK 44 (110)
T ss_dssp -HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHH
Confidence 3578899999999999999999983 57888888777654
No 340
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=29.30 E-value=5e+02 Score=29.67 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCC-CEEEEeeCCCCCCCCCCCcC---chhhHh-HhccCCCcEEEec
Q 003948 545 GYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC---GAFDVT-FMSCLPNMVVMAP 597 (784)
Q Consensus 545 a~dQi~~~~a~~~l-pV~~v~~~~G~~G~dG~THq---~~~dla-~lr~iPn~~V~~P 597 (784)
.+|.+ +.++..++ +++++.+..+. ..||+|-. ..+++. -+++ -||.|+.-
T Consensus 164 vwEA~-~~Ag~~kL~NLivIvD~N~~-qidG~t~~v~~~~e~l~~kf~A-fGW~vi~V 218 (386)
T cd02017 164 SLGAI-GLAAREKLDNLIFVVNCNLQ-RLDGPVRGNGKIIQELEGIFRG-AGWNVIKV 218 (386)
T ss_pred HHHHH-HHHHHhCCCCEEEEEECCCC-ccCCcccccccCchhHHHHHHh-cCCEEEEE
Confidence 34444 56777776 57777777664 34566644 344543 4555 38888765
No 341
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=27.48 E-value=2.6e+02 Score=31.19 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcC-chhhH-hHhccCCCcEEEec---CCHHHHHHHHHHHHHhCCCCe
Q 003948 545 GYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAFDV-TFMSCLPNMVVMAP---SDEAELMHMVATAAVIDDRPS 618 (784)
Q Consensus 545 a~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq-~~~dl-a~lr~iPn~~V~~P---sd~~E~~~~l~~A~~~~~~Pv 618 (784)
.+|.+ ..++..+|. ++++.|.-++ ..||.|-. ..+|+ .-+++ -|+.|+.- -|.+++..++..|-...++|+
T Consensus 160 ~~EA~-~~A~~~~L~nLi~i~D~N~~-q~dg~~~~~~~~~~~~k~~a-~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~ 236 (332)
T PF00456_consen 160 VWEAA-SLAGHYKLDNLIVIYDSNGI-QIDGPTDIVFSEDIAKKFEA-FGWNVIEVCDGHDVEAIYAAIEEAKASKGKPT 236 (332)
T ss_dssp HHHHH-HHHHHTT-TTEEEEEEEESE-ETTEEGGGTHHSHHHHHHHH-TT-EEEEEEETTBHHHHHHHHHHHHHSTSS-E
T ss_pred hHHHH-HHHHHhCCCCEEEEEecCCc-ccCCCcccccchHHHHHHHH-hhhhhcccccCcHHHHHHHHHHHHHhcCCCCc
Confidence 34443 566777876 6666676664 45666643 22333 23555 38888776 688888888888866558899
Q ss_pred EEEcCCC
Q 003948 619 CFRFPRG 625 (784)
Q Consensus 619 ~irl~r~ 625 (784)
+|....-
T Consensus 237 ~Ii~~Tv 243 (332)
T PF00456_consen 237 VIIARTV 243 (332)
T ss_dssp EEEEEE-
T ss_pred eeecceE
Confidence 9977543
No 342
>PRK12753 transketolase; Reviewed
Probab=26.72 E-value=4.2e+02 Score=32.49 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcCch-hhH-hHhccCCCcEEEecC---CHHHHHHHHHHHHHhCCCC
Q 003948 544 RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCGA-FDV-TFMSCLPNMVVMAPS---DEAELMHMVATAAVIDDRP 617 (784)
Q Consensus 544 ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq~~-~dl-a~lr~iPn~~V~~Ps---d~~E~~~~l~~A~~~~~~P 617 (784)
..+|.+ +.++.+++| ++++.+.-++ ..+|+++... +++ ..+++. ||.++.+. |..++..++..|....++|
T Consensus 162 ~~~EA~-~~A~~~kL~nLi~ivd~N~~-~i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P 238 (663)
T PRK12753 162 ISHEVC-SLAGTLGLGKLIGFYDHNGI-SIDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEAQSVKDKP 238 (663)
T ss_pred HHHHHH-HHHHHHCCCCEEEEEECCCC-cCCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHHHHCCCCe
Confidence 344544 778889997 6667776664 3455554322 233 345554 88887544 4566666666665545789
Q ss_pred eEEEcC
Q 003948 618 SCFRFP 623 (784)
Q Consensus 618 v~irl~ 623 (784)
++|...
T Consensus 239 ~~I~~~ 244 (663)
T PRK12753 239 SLIICR 244 (663)
T ss_pred EEEEEE
Confidence 988764
No 343
>PRK10853 putative reductase; Provisional
Probab=26.59 E-value=93 Score=29.23 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccC
Q 003948 664 VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 704 (784)
Q Consensus 664 v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~ 704 (784)
...|.+|.+.|++.|+.++++|..- .|++.+.+.+.++..
T Consensus 10 C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 10 CDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDEL 49 (118)
T ss_pred CHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHc
Confidence 3678889999999999999999975 788998888877543
No 344
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=26.44 E-value=1.1e+02 Score=28.11 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCC
Q 003948 664 VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE 705 (784)
Q Consensus 664 v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~ 705 (784)
...|.+|.+.|++.|+..+++|+.. .|++.+.+.+.++..+
T Consensus 9 C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 9 CDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 4678899999999999999999974 6889999988886543
No 345
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=26.22 E-value=1.4e+02 Score=28.00 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=36.0
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccC
Q 003948 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 704 (784)
Q Consensus 655 vtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~ 704 (784)
++|..+-+. ..|.+|.+.|+++||..+++|... .|++.+.+.+.++..
T Consensus 3 itiy~~p~C-~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~ 50 (117)
T COG1393 3 ITIYGNPNC-STCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKL 50 (117)
T ss_pred EEEEeCCCC-hHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHc
Confidence 444443333 488999999999999999999864 677888887777554
No 346
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=26.07 E-value=2e+02 Score=27.69 Aligned_cols=54 Identities=28% Similarity=0.329 Sum_probs=34.3
Q ss_pred EEEechhHH----HHHHHHHHHhcCCC--cEEEeeccccCCCcHHHHHHHhccCCeEEEEcCC
Q 003948 657 ILGYGSIVQ----QCVLAANMLKSQDI--SVTVADARFCKPLDTDLIRQLANEHEILITVEEG 713 (784)
Q Consensus 657 Iva~Gs~v~----~aleAae~L~~~GI--~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~ 713 (784)
|+++|+.+. ....+++.|+++.. .++++|.-+. ..+.+...++.++.+|+|+.-
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~---~~~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR---GIHLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC---HHHHHHHHHhcCCEEEEEEec
Confidence 677777662 45667788876543 3778887654 234443445567778888763
No 347
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=25.81 E-value=5e+02 Score=26.29 Aligned_cols=73 Identities=14% Similarity=0.266 Sum_probs=46.2
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCC--CcHHHHHHHhccC---CeEEEEcCCC-c-CCcHHHHHHHH
Q 003948 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKP--LDTDLIRQLANEH---EILITVEEGS-V-GGFGSHVCHFL 726 (784)
Q Consensus 654 dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkP--lD~e~i~~~~~~~---~~vVvvEe~~-~-gG~gs~V~~~l 726 (784)
+|+||+=|... |.+|+|...+ .+..+.|+...=+| |.-+.+.++++.+ ..+|.+++.- . -|.|+....++
T Consensus 1 kVIlvTDGD~~--A~ravE~aa~-~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 1 KVILVTDGDEY--AKRAVEIAAK-NIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYV 77 (180)
T ss_pred CEEEEECChHH--HHHHHHHHHH-HhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHH
Confidence 47889989875 2233333322 35567777765554 6667777776543 3566667653 4 58899888888
Q ss_pred Hhc
Q 003948 727 TLS 729 (784)
Q Consensus 727 ~~~ 729 (784)
..+
T Consensus 78 ~~h 80 (180)
T PF14097_consen 78 ANH 80 (180)
T ss_pred HcC
Confidence 754
No 348
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=25.35 E-value=1.6e+02 Score=29.38 Aligned_cols=56 Identities=32% Similarity=0.398 Sum_probs=33.9
Q ss_pred CcEEEEEechhHH----HHHHHHHHHhcCCC---cEEEeeccccCCCcHHHHHHHhccCCeEEEEcC
Q 003948 653 DRVAILGYGSIVQ----QCVLAANMLKSQDI---SVTVADARFCKPLDTDLIRQLANEHEILITVEE 712 (784)
Q Consensus 653 ~dvtIva~Gs~v~----~aleAae~L~~~GI---~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe 712 (784)
..++|+++|+.+. .-..++++|++... ++.|+|.-+.-| +.+ ..+...+.+|+|+.
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~---~l~-~~l~~~d~vIIVDa 64 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGP---NLL-GLLAGYDPVIIVDA 64 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcH---HHH-HHhcCCCcEEEEEe
Confidence 3678899998663 33456667765432 688999988744 332 23334445666654
No 349
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=25.30 E-value=4.9e+02 Score=28.64 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=48.6
Q ss_pred eeEEEecHh--HHHHH-HHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCc-----CchhhHhHhccCCCcEEEecCCHHHH
Q 003948 532 KPFCAIYSS--FLQRG-YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGAFDVTFMSCLPNMVVMAPSDEAEL 603 (784)
Q Consensus 532 ~P~~~tys~--Fl~ra-~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~TH-----q~~~dla~lr~iPn~~V~~Psd~~E~ 603 (784)
+++++++.+ |.+-. ++. ++.++..++|+++++...++ |...++. ....+++-.-.+|++. +.=.|+.++
T Consensus 133 ~~vv~~~GDGa~~~g~~~ea-ln~A~~~~lPvi~vv~NN~y-g~s~~~~~~~~~~~~a~~A~a~G~~~~~-Vdg~d~~av 209 (315)
T TIGR03182 133 NVTACFFGDGAANQGQFYES-FNMAALWKLPVIFVIENNLY-AMGTSVERSSSVTDLYKRGESFGIPGER-VDGMDVLAV 209 (315)
T ss_pred CEEEEEeCCCcccccHHHHH-HHHhhccCcCEEEEEEcCCc-cccCCHHHHhCCcCHHHHHHhCCCCEEE-ECCCCHHHH
Confidence 455555443 43211 233 37788899999999855553 2222211 1122233223456554 345577787
Q ss_pred HHHHHHHHH---hCCCCeEEEc
Q 003948 604 MHMVATAAV---IDDRPSCFRF 622 (784)
Q Consensus 604 ~~~l~~A~~---~~~~Pv~irl 622 (784)
...++.|++ ..++|++|-.
T Consensus 210 ~~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 210 REAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 777777765 3467988754
No 350
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=24.15 E-value=2.3e+02 Score=26.31 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=21.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeecc
Q 003948 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687 (784)
Q Consensus 653 ~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~ 687 (784)
++|.|+.-|.. |.++.+.+++.|+++-+|+-.
T Consensus 3 kkvLIanrGei---a~r~~ra~r~~Gi~tv~v~s~ 34 (110)
T PF00289_consen 3 KKVLIANRGEI---AVRIIRALRELGIETVAVNSN 34 (110)
T ss_dssp SEEEESS-HHH---HHHHHHHHHHTTSEEEEEEEG
T ss_pred CEEEEECCCHH---HHHHHHHHHHhCCcceeccCc
Confidence 36778888877 445555566669988877653
No 351
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=24.00 E-value=6.3e+02 Score=28.21 Aligned_cols=127 Identities=22% Similarity=0.239 Sum_probs=74.4
Q ss_pred eEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCC-eEEEEcCC-CcCCcHHHHHH
Q 003948 647 RILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE-ILITVEEG-SVGGFGSHVCH 724 (784)
Q Consensus 647 ~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~-~vVvvEe~-~~gG~gs~V~~ 724 (784)
+.+.+|..+.++.+|.--+++ +|.++..|..|.++-..+=.-.+-|.|.+.+..|+ .+|+|-.+ ++.|.-+.+.+
T Consensus 87 N~lePgd~vLv~~~G~wg~ra---~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~ 163 (385)
T KOG2862|consen 87 NLLEPGDNVLVVSTGTWGQRA---ADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLA 163 (385)
T ss_pred hhcCCCCeEEEEEechHHHHH---HHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHH
Confidence 566788899999999877764 55556669999999766656677788887765553 44444433 34555554333
Q ss_pred HHHhc----C-CC--CCCcceEEeecC----cccc----cCCCHHHHHHHcCCCHHHHHHHHHHHhcCCc
Q 003948 725 FLTLS----G-IL--DGPLKLRSMVLP----DRYI----DHGSPADQLEESGLSSRHISATVLSLLGRPK 779 (784)
Q Consensus 725 ~l~~~----g-~~--~~~~~~~~lg~~----d~f~----~~g~~~elle~~gl~~~~I~~~i~~ll~~~~ 779 (784)
...+- . ++ |. +..+|.. |+++ .+|+++.+=.=.||++=.-..++++.+...|
T Consensus 164 ~~g~lc~k~~~lllVD~---VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK 230 (385)
T KOG2862|consen 164 ISGELCHKHEALLLVDT---VASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRK 230 (385)
T ss_pred HHHHHhhcCCeEEEEec---hhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhcc
Confidence 33221 1 11 11 2223321 3333 4677766655566766444456666554433
No 352
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=23.94 E-value=1.1e+02 Score=35.88 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=82.1
Q ss_pred HHHHHHHHHhh-C-CCEEEEecCCCCCCChh--hhHHhCCCCeeecc-ccHHHHHHHHHHHHhc-CCeeEEEecHhHHHH
Q 003948 471 FAESLIKEAET-D-DKIVAIHAAMGGGTGLN--YFQKRFPDRCFDVG-IAEQHAVTFAAGLASE-GVKPFCAIYSSFLQR 544 (784)
Q Consensus 471 f~~aL~~l~~~-d-~~iv~i~aD~ggs~gl~--~f~~~~p~R~~d~G-IaE~~~vg~AaGlA~~-G~~P~~~tys~Fl~r 544 (784)
+++.|.+.+.+ + ..++.+..| ++|. ++-.+.|+ +-.+| -.|.++.-.|-|.|.. |+-.++.||+..-.-
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGD----FNL~LLD~l~~~~~-lrwvGn~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLS 80 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGD----FNLSLLDKLYAVPG-LRWVGNCNELNAAYAADGYARSKGIGACVTTFGVGELS 80 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCc----ccHHHHHHhhhcCC-ceeecccchhhhhhhhcchhhhcCceEEEEEeccchhh
Confidence 34444444333 2 345555444 5453 33334455 44444 4688998899999974 888888889887667
Q ss_pred HHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCch--hhH-hHhccCCCcE--EEecCCHHHHHH----HHHHHHHh
Q 003948 545 GYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA--FDV-TFMSCLPNMV--VMAPSDEAELMH----MVATAAVI 613 (784)
Q Consensus 545 a~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~--~dl-a~lr~iPn~~--V~~Psd~~E~~~----~l~~A~~~ 613 (784)
|++-|. -+.-.++||+.+...+.. .+.+-.-||-. -|. .++|..-++. +..=-|.+++.. +++.|+.
T Consensus 81 AlNGIA-GsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~- 158 (561)
T KOG1184|consen 81 ALNGIA-GAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALK- 158 (561)
T ss_pred hhcccc-hhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHH-
Confidence 765542 122358999988632221 12223345422 222 2344433321 222234444444 5555544
Q ss_pred CCCCeEEEcCCCC
Q 003948 614 DDRPSCFRFPRGN 626 (784)
Q Consensus 614 ~~~Pv~irl~r~~ 626 (784)
..+|+||-.|...
T Consensus 159 ~~rPVYi~iP~n~ 171 (561)
T KOG1184|consen 159 ESKPVYIGVPANL 171 (561)
T ss_pred hcCCeEEEeeccc
Confidence 7899999988653
No 353
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=23.87 E-value=1.1e+02 Score=30.86 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=34.7
Q ss_pred HHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhc-CCCCCCc-ceEEeecCcccccCCCHHHH
Q 003948 694 TDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLS-GILDGPL-KLRSMVLPDRYIDHGSPADQ 756 (784)
Q Consensus 694 ~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~-g~~~~~~-~~~~lg~~d~f~~~g~~~el 756 (784)
...+.+..+....+++.+... . -..+++.|.+. +..+.++ -..++|.+++.+..++.+|+
T Consensus 148 ~~~l~~~~~~~~~~vil~~~~--~-~~~i~~~L~~~~~~~~~~v~v~~~lg~~~E~i~~~tl~el 209 (210)
T PF00590_consen 148 EKLLENLLANGDTLVILTDPR--R-LAEIAELLLERLYPPDTPVAVGERLGYPDERIFRGTLEEL 209 (210)
T ss_dssp HHHHHHHHTTTSEEEEEESGC--C-HHHHHHHHHHHSHTTTSEEEEEESTTSTTEEEEEEEHHHH
T ss_pred HHHHHHHHhCCCEEEEEccCc--h-HHHHHHHHHhhCCCCCcEEEHHHhcCCCCCEEEEeEHHHc
Confidence 445666666677888887654 2 55666777655 1111111 23356777777776666553
No 354
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=23.41 E-value=6.1e+02 Score=28.96 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCC
Q 003948 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (784)
Q Consensus 258 ~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~ 314 (784)
++++|+|.++| ..++++...=+.++ ..+|.+.+|+....|++++ +-|+
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~-~~~R 108 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMV-DVNR 108 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEE-Eecc
Confidence 46778888776 45677777777777 8899999999999996544 4455
No 355
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=23.39 E-value=3.5e+02 Score=30.93 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=37.6
Q ss_pred EechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEE
Q 003948 659 GYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILIT 709 (784)
Q Consensus 659 a~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVv 709 (784)
.||+.-..|...++-|.+.|++|.++++..- |.+.|.+.+...+.+++
T Consensus 256 myg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv 303 (388)
T COG0426 256 MYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV 303 (388)
T ss_pred ccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEEE
Confidence 6788888999999999999999999999876 56666666655554443
No 356
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=22.88 E-value=2.6e+02 Score=26.94 Aligned_cols=54 Identities=26% Similarity=0.366 Sum_probs=35.4
Q ss_pred EEEEEechhHH----HHHHHHHHHhcC-C--CcEEEeeccccCCCcHHHHHHHhccCCeEEEEcC
Q 003948 655 VAILGYGSIVQ----QCVLAANMLKSQ-D--ISVTVADARFCKPLDTDLIRQLANEHEILITVEE 712 (784)
Q Consensus 655 vtIva~Gs~v~----~aleAae~L~~~-G--I~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe 712 (784)
++|+++|+... ....+++.|++. + -.++++|..+.- .+.+ ..+.+++.+|+|+.
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~---~~l~-~~l~~~d~viiVDA 61 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG---LELL-PYIEEADRLIIVDA 61 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhcCCEEEEEEc
Confidence 46888888763 456677778654 3 358888887642 3333 33446678888887
No 357
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=22.81 E-value=6e+02 Score=24.89 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEE--cCCcccchhhHHHHHHHhhcCCCEEEEEECCC
Q 003948 259 ISAGLGMAVARDILGKNNNVISVI--GDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (784)
Q Consensus 259 ls~AvG~AlA~~~~g~~~~Vv~vi--GDGal~eG~~~EAln~A~~~~~nlivIv~dN~ 314 (784)
.-+|-|.+.+. +..+|++ |=|..+ ..-++..|.....|+++|.-+..
T Consensus 48 ~~mA~gyar~t------~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~ 96 (162)
T cd07038 48 GYAADGYARVK------GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPS 96 (162)
T ss_pred HHHHHHHHHhh------CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCC
Confidence 34555555432 2344443 555554 44577788777899999985543
No 358
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=22.55 E-value=3.2e+02 Score=26.95 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=37.2
Q ss_pred cEEEEEechhHH----HHHHHHHHHhcC-C--CcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCC
Q 003948 654 RVAILGYGSIVQ----QCVLAANMLKSQ-D--ISVTVADARFCKPLDTDLIRQLANEHEILITVEEG 713 (784)
Q Consensus 654 dvtIva~Gs~v~----~aleAae~L~~~-G--I~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~ 713 (784)
+++|+++|+.+. ....+++.|++. . -.++++|.-+.- .+.+ ..+...+.+|+|+.-
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~---~~ll-~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG---MELL-GDMANRDHLIIADAI 64 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH---HHHH-HHHhCCCEEEEEEec
Confidence 578999999873 456778888653 3 358899987653 2333 333456777777764
No 359
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=22.35 E-value=2.1e+02 Score=24.80 Aligned_cols=54 Identities=17% Similarity=0.272 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEeeccccCCCcH-HHHHHHh-ccCCeEEEEcCCCcCC
Q 003948 664 VQQCVLAANMLKSQDISVTVADARFCKPLDT-DLIRQLA-NEHEILITVEEGSVGG 717 (784)
Q Consensus 664 v~~aleAae~L~~~GI~v~VId~~slkPlD~-e~i~~~~-~~~~~vVvvEe~~~gG 717 (784)
-..|..|.+.|.+.|+..+.+++.--.+-.. +.+++.- ..+-+.|++.+...||
T Consensus 11 CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 11 CPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred CchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence 5778999999999999999999875443122 3333331 2445788888755554
No 360
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=22.35 E-value=1.4e+02 Score=30.12 Aligned_cols=120 Identities=22% Similarity=0.178 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEcCCCCCccccCCCCCCCCCcc--------ccceeEeeeCCcEEEEEechhHHHHHHHH
Q 003948 600 EAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLE--------IGKGRILMEGDRVAILGYGSIVQQCVLAA 671 (784)
Q Consensus 600 ~~E~~~~l~~A~~~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~--------igk~~vlreG~dvtIva~Gs~v~~aleAa 671 (784)
-+|+..++..|+- .++-+||.--.. +..+....-....+++ .++...+.+-.+|.|++-.+.-..+.+.+
T Consensus 24 iedaARlLAQA~v-geG~IYi~G~~E-m~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a 101 (172)
T PF10740_consen 24 IEDAARLLAQAIV-GEGTIYIYGFGE-MEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALA 101 (172)
T ss_dssp HHHHHHHHHHHHH-TT--EEEEE-GG-GGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCEEEEEecCh-HHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHH
Confidence 3677888888865 678888853221 1111000000011111 11112344456899999999999999999
Q ss_pred HHHhcCCCcEEEeeccccCCCcHHHHHHHh------ccCCeEEEEcCCCcCCcHHHHHH
Q 003948 672 NMLKSQDISVTVADARFCKPLDTDLIRQLA------NEHEILITVEEGSVGGFGSHVCH 724 (784)
Q Consensus 672 e~L~~~GI~v~VId~~slkPlD~e~i~~~~------~~~~~vVvvEe~~~gG~gs~V~~ 724 (784)
+.|.++|+.+-+|+.. ++ +.+.+.+.+ +-.+.+|--|++..-|+.+.++.
T Consensus 102 ~~L~~~gi~~v~Vs~~--~~-~~~~l~~~~~~~Idl~~~~~LvP~EdG~Rig~P~~~a~ 157 (172)
T PF10740_consen 102 KQLIEQGIPFVGVSPN--KP-DEEDLEDLADVHIDLKLPKPLVPTEDGDRIGFPHLMAA 157 (172)
T ss_dssp HHHHHHT--EEEEE-S--S----TTGGG-SSS-EE----S-SEE-TTS-EE---HHHHH
T ss_pred HHHHHCCCCEEEEEec--CC-CCCchhhhhhheeecccCCCcccCCCCCEecchHHHHH
Confidence 9999999999888822 22 122222211 22356777788766666655544
No 361
>PRK10026 arsenate reductase; Provisional
Probab=22.30 E-value=1.4e+02 Score=29.17 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccC
Q 003948 663 IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 704 (784)
Q Consensus 663 ~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~ 704 (784)
....|.+|.+.|++.|+.++++|... .|++.+.+.+.++..
T Consensus 11 ~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 11 ACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADM 51 (141)
T ss_pred CCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhC
Confidence 34678899999999999999999875 788888888777643
No 362
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.05 E-value=1.6e+02 Score=28.05 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=34.3
Q ss_pred echh-HHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhcc
Q 003948 660 YGSI-VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANE 703 (784)
Q Consensus 660 ~Gs~-v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~ 703 (784)
||.- -..|.+|.+.|+++|+..+++|..- .|++.+.+.+.++.
T Consensus 6 Y~~p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 6 YEKPGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGN 49 (126)
T ss_pred EeCCCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHH
Confidence 4433 4678899999999999999999874 68888888777654
No 363
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.67 E-value=1.5e+02 Score=25.18 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhcCCCcEEEeecc
Q 003948 663 IVQQCVLAANMLKSQDISVTVADAR 687 (784)
Q Consensus 663 ~v~~aleAae~L~~~GI~v~VId~~ 687 (784)
..+.|++|-+.|++.|++++++-+|
T Consensus 10 st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 3567888888999999999998554
No 364
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=21.59 E-value=1.4e+02 Score=33.50 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEEC
Q 003948 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLND 312 (784)
Q Consensus 258 ~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~d 312 (784)
++++|+|.++| ..++++...|+.+. ..+|.+..|+-...|+++++-.
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~ 106 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIM 106 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEec
Confidence 46778888776 56688888999998 8999999999999997776533
No 365
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=21.50 E-value=6.7e+02 Score=27.67 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=42.4
Q ss_pred cCCcccchh-HHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHh-hcCCCEEEEEECCCC
Q 003948 250 FGAGHSSTS-ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAG-FLDANLIVVLNDNKQ 315 (784)
Q Consensus 250 ~g~G~~G~~-ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~-~~~~nlivIv~dN~~ 315 (784)
|-.|.+=+. ++.|.|+|++-+ .-.+++=+++..+-+||=+.++- +.++|+.+|.-+-|.
T Consensus 52 ~NvGIaEQ~mvg~AAGLA~~Gk-------~Pfv~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~ 112 (312)
T COG3958 52 FNVGIAEQDMVGTAAGLALAGK-------KPFVSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGV 112 (312)
T ss_pred eecchHHHHHHHHHHHHHhcCC-------CceeechHHHHHHHHHHHHHHHhhhccCCeEEEEecCCc
Confidence 344544433 677888887533 34456778999999999987765 567999999998885
No 366
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=21.33 E-value=1.8e+02 Score=29.74 Aligned_cols=35 Identities=3% Similarity=0.085 Sum_probs=24.0
Q ss_pred CeEEEEEcCC-cccchhhHHHHHHHhhcCCCEEEEE
Q 003948 276 NNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVL 310 (784)
Q Consensus 276 ~~Vv~viGDG-al~eG~~~EAln~A~~~~~nlivIv 310 (784)
.++++|+|++ +..+|...++...+...+-.+-+|-
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 3667777766 9998988777777666555554444
No 367
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=21.26 E-value=3.4e+02 Score=27.71 Aligned_cols=69 Identities=14% Similarity=0.086 Sum_probs=51.2
Q ss_pred echhHHHHHHHHHHHhcCCCcEEEeecccc--CC--------C--------c-HHHHHHHhccCCeEEEEcCCCcCCcHH
Q 003948 660 YGSIVQQCVLAANMLKSQDISVTVADARFC--KP--------L--------D-TDLIRQLANEHEILITVEEGSVGGFGS 720 (784)
Q Consensus 660 ~Gs~v~~aleAae~L~~~GI~v~VId~~sl--kP--------l--------D-~e~i~~~~~~~~~vVvvEe~~~gG~gs 720 (784)
+|.+...+.++++.+++.|+++++++++-. +| . | .+.+.+.+.....+|+.=--+.|++.+
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vsa 92 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVSA 92 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCeecCCchH
Confidence 588888888899999888999999999843 22 1 2 345555566667777666555799999
Q ss_pred HHHHHHHh
Q 003948 721 HVCHFLTL 728 (784)
Q Consensus 721 ~V~~~l~~ 728 (784)
.+..|+..
T Consensus 93 ~~K~fiDR 100 (207)
T COG0655 93 QMKAFIDR 100 (207)
T ss_pred HHHHHHhh
Confidence 99888865
No 368
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=21.15 E-value=1.6e+02 Score=27.65 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=23.0
Q ss_pred echhHHHHHHHHHHHhcCCCcEEEeeccccC
Q 003948 660 YGSIVQQCVLAANMLKSQDISVTVADARFCK 690 (784)
Q Consensus 660 ~Gs~v~~aleAae~L~~~GI~v~VId~~slk 690 (784)
||+.-..|.+.++.|++.|++++++++....
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~ 37 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVRVVDLDDFD 37 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEEEEEGGGSC
T ss_pred chhHHHHHHHHHHHHHHcCCceeeechhhhh
Confidence 3445566667777788889999999987553
No 369
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=20.92 E-value=1.6e+02 Score=27.31 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccC
Q 003948 663 IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 704 (784)
Q Consensus 663 ~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~ 704 (784)
....|.+|.+.|++.|+.+.++|+.. .|++.+.+.+.++..
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 8 RCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKL 48 (114)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHc
Confidence 34678899999999999999999874 788888888877654
No 370
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=20.51 E-value=1.3e+02 Score=28.18 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=28.1
Q ss_pred eeCCcEEEEEechhH-HHHHHHHHHHhcCCCcEEEeecc
Q 003948 650 MEGDRVAILGYGSIV-QQCVLAANMLKSQDISVTVADAR 687 (784)
Q Consensus 650 reG~dvtIva~Gs~v-~~aleAae~L~~~GI~v~VId~~ 687 (784)
.+..+++|+++|... ..--+..+.|++.||.+++.|.+
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 345689999999864 23345567788899999998864
No 371
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.44 E-value=17 Score=34.57 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=18.2
Q ss_pred hcccccccccccccccccccc
Q 003948 59 LTTEYWIAPTMALSSGIAIGA 79 (784)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~ 79 (784)
.|++-|++|.++|..||+||+
T Consensus 3 wt~~~W~~a~igLvvGi~IG~ 23 (138)
T COG3105 3 WTFMTWEYALIGLVVGIIIGA 23 (138)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999996
No 372
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=20.06 E-value=77 Score=29.24 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=25.8
Q ss_pred eCCcEEEEEechhHH-HHHHHHHHHhcCCCcEEEeecc
Q 003948 651 EGDRVAILGYGSIVQ-QCVLAANMLKSQDISVTVADAR 687 (784)
Q Consensus 651 eG~dvtIva~Gs~v~-~aleAae~L~~~GI~v~VId~~ 687 (784)
+..+++||++|.... .-.+..+.|++.||.+++.|-+
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 467999999998743 3345677888999999998864
No 373
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=20.06 E-value=1.8e+02 Score=27.56 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCccc
Q 003948 668 VLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRY 747 (784)
Q Consensus 668 leAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f 747 (784)
..|++.|++.||++.-- .-+.++.+.+ .....||+++++... ++..+ ........-.++|.+
T Consensus 41 ~~a~~~l~e~Gid~~~~---~~~~l~~~~~----~~~D~vitm~~~~~~-----~~~~~------p~~~~~~~w~i~DP~ 102 (129)
T TIGR02691 41 PNAVKAMKEVGIDISNQ---TSDLIDLDIL----NKADLVVTLCGDARD-----KCPAT------PPHVKREHWGLDDPA 102 (129)
T ss_pred HHHHHHHHHcCCCcCCc---ccccCChhhc----ccCCEEEEeCchhcc-----CCCcc------CCCCeEEECCCCCCC
Confidence 45666777789876322 2233443332 356789998754210 00000 011222344778888
Q ss_pred ccCCCHHHHHHHcCCCHHHHHHHHHH
Q 003948 748 IDHGSPADQLEESGLSSRHISATVLS 773 (784)
Q Consensus 748 ~~~g~~~elle~~gl~~~~I~~~i~~ 773 (784)
+..|+.++.++.|--.-+.|..++.+
T Consensus 103 ~~~g~~~~~~~~~~~~~~~I~~~v~~ 128 (129)
T TIGR02691 103 RAEGTEEEKWAVFRRVRDEIKERVKD 128 (129)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 88899988888877777777777664
No 374
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=20.03 E-value=1.7e+02 Score=26.95 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccC
Q 003948 664 VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 704 (784)
Q Consensus 664 v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~ 704 (784)
...|.+|.+.|++.|+.+.++|+.- .|++.+.+.+.++..
T Consensus 9 C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~ 48 (112)
T cd03034 9 CSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKL 48 (112)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHc
Confidence 4678889999999999999999874 688888887777544
No 375
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=20.01 E-value=2.6e+02 Score=26.55 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=47.3
Q ss_pred HHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEee------
Q 003948 669 LAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMV------ 742 (784)
Q Consensus 669 eAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg------ 742 (784)
.|++.|++.||+.. -..-++++...+ .....||++++... +.+..... ....++..++
T Consensus 49 ~a~~~l~~~Gid~s---~h~s~~l~~~~~----~~aDlIi~m~~~~~--------~~~~~~~~-~~~~~v~~~~~~~~~~ 112 (141)
T cd00115 49 RAIAVLAEHGIDIS---GHRARQLTEDDF----DEFDLIITMDESNL--------AELLEPPP-GGRAKVELLGEYAGDR 112 (141)
T ss_pred HHHHHHHHcCCCcc---cCeeeeCCHHHH----HhCCEEEEECHHHH--------HHHHhcCC-CCcceEEeHhhhCcCC
Confidence 45566777788863 344456665443 34678999987431 11211111 1123556666
Q ss_pred -cCcccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 003948 743 -LPDRYIDHGSPADQLEESGLSSRHISATVLSLL 775 (784)
Q Consensus 743 -~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll 775 (784)
++|.|+.. .+.|.-..++|.+.+++++
T Consensus 113 ~i~DP~~~~------~~~f~~~~~~I~~~v~~l~ 140 (141)
T cd00115 113 EVPDPYYGS------LEAFEEVYDLIEEAIKALL 140 (141)
T ss_pred CCCCCCCCC------hHHHHHHHHHHHHHHHHHh
Confidence 67766643 3344445677777777765
Done!