Query 003948
Match_columns 784
No_of_seqs 417 out of 2659
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:13:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 6E-113 2E-117 1007.1 56.0 617 137-777 7-624 (629)
2 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 2E-112 5E-117 1002.8 53.4 616 136-776 4-620 (621)
3 3mos_A Transketolase, TK; thia 100.0 5E-100 2E-104 893.2 51.3 552 150-772 3-615 (616)
4 3l84_A Transketolase; TKT, str 100.0 1.8E-99 6E-104 886.7 44.1 536 155-773 1-631 (632)
5 3rim_A Transketolase, TK; TPP, 100.0 3.7E-99 1E-103 890.1 43.9 545 157-776 19-699 (700)
6 3m49_A Transketolase; alpha-be 100.0 1.4E-98 5E-103 886.1 41.6 553 152-775 21-690 (690)
7 3kom_A Transketolase; rossmann 100.0 3.6E-97 1E-101 872.3 41.0 548 156-775 2-663 (663)
8 1itz_A Transketolase; calvin c 100.0 1.7E-96 6E-101 871.7 46.8 550 149-773 5-674 (675)
9 3uk1_A Transketolase; structur 100.0 8.1E-97 3E-101 872.5 40.5 541 160-775 45-710 (711)
10 2r8o_A Transketolase 1, TK 1; 100.0 1.5E-94 5.2E-99 854.8 43.5 544 160-776 4-664 (669)
11 2e6k_A Transketolase; structur 100.0 1.6E-94 5.5E-99 852.2 42.9 535 162-775 10-651 (651)
12 1gpu_A Transketolase; transfer 100.0 1.6E-93 5.6E-98 846.8 45.7 538 159-776 6-665 (680)
13 2qtc_A Pyruvate dehydrogenase 100.0 9.3E-93 3.2E-97 852.7 45.7 617 139-776 56-857 (886)
14 1r9j_A Transketolase; domains, 100.0 7E-93 2.4E-97 839.9 43.3 538 159-776 5-656 (673)
15 3ahc_A Phosphoketolase, xylulo 100.0 3.9E-69 1.3E-73 636.7 42.4 531 178-776 81-786 (845)
16 2jgd_A 2-oxoglutarate dehydrog 100.0 2.5E-59 8.5E-64 564.6 43.3 553 154-772 194-930 (933)
17 1ik6_A Pyruvate dehydrogenase; 100.0 6.4E-60 2.2E-64 522.1 25.1 338 427-776 10-368 (369)
18 2yic_A 2-oxoglutarate decarbox 100.0 9.6E-55 3.3E-59 522.2 31.7 540 153-753 113-852 (868)
19 1w85_B Pyruvate dehydrogenase 100.0 2.3E-54 7.8E-59 470.8 30.0 304 465-776 3-323 (324)
20 2ozl_B PDHE1-B, pyruvate dehyd 100.0 2.2E-54 7.5E-59 473.5 29.4 306 464-776 14-340 (341)
21 2xt6_A 2-oxoglutarate decarbox 100.0 8E-54 2.7E-58 525.6 34.0 540 153-753 358-1097(1113)
22 1umd_B E1-beta, 2-OXO acid deh 100.0 7.9E-54 2.7E-58 466.6 28.2 304 464-776 3-323 (324)
23 2bfd_B 2-oxoisovalerate dehydr 100.0 4.9E-54 1.7E-58 471.2 25.8 316 450-776 6-341 (342)
24 1qs0_B 2-oxoisovalerate dehydr 100.0 7.2E-52 2.4E-56 453.7 27.7 300 465-776 5-337 (338)
25 1umd_A E1-alpha, 2-OXO acid de 100.0 5.8E-28 2E-32 266.9 26.8 230 152-438 30-277 (367)
26 1w85_A Pyruvate dehydrogenase 99.9 2.7E-23 9.4E-28 229.2 23.2 222 152-435 38-272 (368)
27 2ozl_A PDHE1-A type I, pyruvat 99.9 3.1E-23 1.1E-27 228.3 22.9 229 149-437 25-270 (365)
28 2bfd_A 2-oxoisovalerate dehydr 99.9 8.2E-23 2.8E-27 227.7 23.8 227 153-437 50-294 (400)
29 1yd7_A 2-keto acid:ferredoxin 99.9 1.3E-23 4.4E-28 234.3 11.7 284 465-775 23-394 (395)
30 1qs0_A 2-oxoisovalerate dehydr 99.9 9.5E-22 3.3E-26 219.2 24.9 203 180-438 103-315 (407)
31 2c42_A Pyruvate-ferredoxin oxi 99.7 9.3E-16 3.2E-20 191.2 28.0 252 508-777 55-384 (1231)
32 4feg_A Pyruvate oxidase; carba 99.6 9.5E-15 3.2E-19 171.4 12.9 215 184-471 369-586 (603)
33 3ju3_A Probable 2-oxoacid ferr 99.5 2.8E-14 9.5E-19 132.5 9.7 104 651-776 12-117 (118)
34 2uz1_A Benzaldehyde lyase; thi 99.4 6.6E-13 2.3E-17 154.4 13.3 179 185-432 369-548 (563)
35 1ozh_A ALS, acetolactate synth 99.3 5.5E-12 1.9E-16 146.8 15.4 175 186-433 371-546 (566)
36 1t9b_A Acetolactate synthase, 99.3 2.5E-12 8.7E-17 152.6 8.9 132 251-436 511-643 (677)
37 1ybh_A Acetolactate synthase, 99.3 3.9E-12 1.3E-16 148.8 9.2 141 251-436 424-564 (590)
38 2iht_A Carboxyethylarginine sy 99.3 6.9E-12 2.3E-16 146.2 9.2 126 251-430 434-561 (573)
39 1q6z_A BFD, BFDC, benzoylforma 99.2 7.1E-12 2.4E-16 144.6 8.1 127 251-431 400-526 (528)
40 2pgn_A Cyclohexane-1,2-dione h 99.2 7.1E-12 2.4E-16 146.6 6.1 180 185-437 374-554 (589)
41 2vk8_A Pyruvate decarboxylase 99.2 1.4E-11 4.7E-16 143.3 8.4 177 185-432 364-544 (563)
42 2pan_A Glyoxylate carboligase; 99.2 2E-11 6.8E-16 143.5 8.6 143 251-434 440-584 (616)
43 1ovm_A Indole-3-pyruvate decar 99.2 2.1E-11 7.3E-16 141.3 8.5 126 250-432 405-534 (552)
44 1v5e_A Pyruvate oxidase; oxido 99.2 2.9E-11 9.8E-16 141.5 9.7 131 250-432 410-541 (590)
45 3eya_A Pyruvate dehydrogenase 99.2 2.5E-11 8.4E-16 140.8 8.7 179 184-434 355-533 (549)
46 2vbi_A Pyruvate decarboxylase; 99.1 2.9E-11 1E-15 140.7 7.6 125 251-433 407-536 (566)
47 2vbf_A Branched-chain alpha-ke 99.1 5.9E-11 2E-15 138.2 8.6 125 251-432 423-553 (570)
48 2wvg_A PDC, pyruvate decarboxy 99.1 5.3E-11 1.8E-15 138.6 7.7 125 251-433 411-544 (568)
49 2nxw_A Phenyl-3-pyruvate decar 99.1 8E-11 2.7E-15 137.0 8.1 124 251-432 420-544 (565)
50 2c31_A Oxalyl-COA decarboxylas 99.1 1.7E-10 5.8E-15 134.3 9.9 126 251-433 424-550 (568)
51 2q28_A Oxalyl-COA decarboxylas 99.1 2.9E-10 9.8E-15 132.2 11.2 127 251-433 419-547 (564)
52 3hww_A 2-succinyl-5-enolpyruvy 99.1 1.8E-10 6E-15 133.9 9.1 126 251-431 415-540 (556)
53 2x7j_A 2-succinyl-5-enolpyruvy 99.0 1.6E-10 5.4E-15 135.6 7.3 129 251-431 453-581 (604)
54 3lq1_A 2-succinyl-5-enolpyruvy 98.9 6.7E-10 2.3E-14 129.6 7.3 127 257-436 440-566 (578)
55 2c42_A Pyruvate-ferredoxin oxi 98.0 8.9E-06 3E-10 102.0 8.7 115 275-429 953-1069(1231)
56 1v5e_A Pyruvate oxidase; oxido 90.9 0.37 1.2E-05 55.9 7.9 111 511-626 47-165 (590)
57 1ozh_A ALS, acetolactate synth 89.0 1.3 4.4E-05 51.0 10.3 113 508-625 50-170 (566)
58 2wvg_A PDC, pyruvate decarboxy 88.8 3.6 0.00012 47.2 13.9 114 508-625 43-169 (568)
59 2pan_A Glyoxylate carboligase; 88.6 2.9 9.8E-05 48.6 13.1 122 499-625 58-188 (616)
60 1ybh_A Acetolactate synthase, 88.5 1.8 6.2E-05 50.0 11.2 113 508-625 52-172 (590)
61 2iht_A Carboxyethylarginine sy 88.3 1.2 4.1E-05 51.3 9.5 115 507-625 49-171 (573)
62 2nxw_A Phenyl-3-pyruvate decar 88.0 2.1 7.2E-05 49.2 11.3 151 465-625 21-186 (565)
63 3eya_A Pyruvate dehydrogenase 87.5 4.1 0.00014 46.5 13.3 113 508-625 43-162 (549)
64 2uz1_A Benzaldehyde lyase; thi 87.4 1.2 4E-05 51.3 8.6 121 499-625 35-164 (563)
65 2vbi_A Pyruvate decarboxylase; 86.8 3.6 0.00012 47.2 12.3 114 508-626 43-170 (566)
66 4feg_A Pyruvate oxidase; carba 86.6 4 0.00014 47.2 12.7 122 499-625 42-171 (603)
67 3hww_A 2-succinyl-5-enolpyruvy 86.4 9.7 0.00033 43.5 15.6 147 471-625 10-171 (556)
68 1q6z_A BFD, BFDC, benzoylforma 84.9 4.6 0.00016 45.8 11.8 114 508-625 40-161 (528)
69 2pgn_A Cyclohexane-1,2-dione h 84.4 1.4 4.9E-05 50.9 7.4 113 508-625 45-165 (589)
70 2vbf_A Branched-chain alpha-ke 84.1 5.1 0.00017 46.0 11.8 116 506-625 62-190 (570)
71 1t9b_A Acetolactate synthase, 83.7 2.2 7.4E-05 50.4 8.6 112 508-624 122-241 (677)
72 3lq1_A 2-succinyl-5-enolpyruvy 81.1 12 0.0004 43.0 13.4 147 471-625 13-178 (578)
73 2x7j_A 2-succinyl-5-enolpyruvy 79.3 8.7 0.0003 44.4 11.5 114 508-625 71-198 (604)
74 2c31_A Oxalyl-COA decarboxylas 77.1 4.6 0.00016 46.3 8.3 115 507-625 48-171 (568)
75 1ovm_A Indole-3-pyruvate decar 74.8 14 0.00048 42.0 11.5 117 506-625 42-170 (552)
76 2vk8_A Pyruvate decarboxylase 74.3 14 0.00049 42.0 11.4 114 508-626 44-171 (563)
77 2q28_A Oxalyl-COA decarboxylas 71.6 8 0.00027 44.2 8.4 115 507-625 46-169 (564)
78 1w85_A Pyruvate dehydrogenase 70.2 9.7 0.00033 41.3 8.2 101 519-622 147-263 (368)
79 2bfd_A 2-oxoisovalerate dehydr 68.0 9.2 0.00031 42.0 7.5 101 520-622 168-283 (400)
80 1gpu_A Transketolase; transfer 66.7 14 0.00046 43.6 9.1 87 533-622 150-246 (680)
81 3ipz_A Monothiol glutaredoxin- 66.4 7.8 0.00027 34.1 5.4 69 652-721 17-90 (109)
82 2r8o_A Transketolase 1, TK 1; 65.5 15 0.00052 43.1 9.1 87 533-622 148-243 (669)
83 1r9j_A Transketolase; domains, 64.9 23 0.0008 41.5 10.6 89 532-623 149-247 (673)
84 1umd_A E1-alpha, 2-OXO acid de 62.8 19 0.00066 38.9 8.8 108 511-622 142-265 (367)
85 2wci_A Glutaredoxin-4; redox-a 62.8 9.5 0.00033 35.3 5.4 67 653-720 35-106 (135)
86 3m49_A Transketolase; alpha-be 61.4 26 0.00089 41.3 10.1 89 532-623 173-270 (690)
87 3kom_A Transketolase; rossmann 58.5 31 0.0011 40.4 10.1 89 532-623 149-246 (663)
88 1qs0_A 2-oxoisovalerate dehydr 57.9 17 0.00057 40.1 7.2 99 521-622 188-303 (407)
89 3zyw_A Glutaredoxin-3; metal b 57.7 12 0.00043 33.0 5.1 65 652-720 15-87 (111)
90 2lqo_A Putative glutaredoxin R 56.5 21 0.00071 30.6 6.2 71 654-729 5-82 (92)
91 1wik_A Thioredoxin-like protei 55.7 9.5 0.00033 33.4 4.0 67 652-719 14-85 (109)
92 2e6k_A Transketolase; structur 55.5 34 0.0012 39.9 9.7 87 532-622 151-246 (651)
93 1itz_A Transketolase; calvin c 52.3 40 0.0014 39.5 9.7 88 533-623 161-258 (675)
94 2o1s_A 1-deoxy-D-xylulose-5-ph 50.5 66 0.0023 37.2 11.0 102 258-426 373-476 (621)
95 3uk1_A Transketolase; structur 50.2 22 0.00075 42.1 6.9 88 532-623 188-284 (711)
96 2ozl_A PDHE1-A type I, pyruvat 48.5 26 0.00088 38.0 6.7 100 520-622 146-259 (365)
97 1aba_A Glutaredoxin; electron 48.0 24 0.00082 29.2 5.1 58 663-720 13-81 (87)
98 1qs0_B 2-oxoisovalerate dehydr 47.8 62 0.0021 34.2 9.6 37 387-428 138-175 (338)
99 2o1x_A 1-deoxy-D-xylulose-5-ph 45.8 43 0.0015 38.9 8.5 26 596-622 260-285 (629)
100 3mos_A Transketolase, TK; thia 45.3 1E+02 0.0034 35.7 11.4 49 259-314 368-416 (616)
101 2wem_A Glutaredoxin-related pr 44.3 30 0.001 31.0 5.5 66 652-721 19-93 (118)
102 3l84_A Transketolase; TKT, str 43.5 36 0.0012 39.6 7.3 99 519-622 119-238 (632)
103 3gx8_A Monothiol glutaredoxin- 42.1 27 0.00091 31.4 4.7 66 652-721 15-91 (121)
104 2vzf_A NADH-dependent FMN redu 39.8 54 0.0018 31.6 6.9 65 663-727 18-93 (197)
105 2ozl_B PDHE1-B, pyruvate dehyd 39.4 94 0.0032 33.0 9.3 49 258-315 74-132 (341)
106 3rim_A Transketolase, TK; TPP, 39.4 71 0.0024 37.6 8.9 88 533-623 170-266 (700)
107 1ik6_A Pyruvate dehydrogenase; 38.5 1.2E+02 0.004 32.7 9.9 49 258-314 110-168 (369)
108 3rpe_A MDAB, modulator of drug 35.9 1.1E+02 0.0039 30.4 8.7 61 665-727 47-107 (218)
109 2q62_A ARSH; alpha/beta, flavo 35.8 65 0.0022 32.7 7.0 64 665-728 52-123 (247)
110 3qmx_A Glutaredoxin A, glutare 35.7 41 0.0014 28.8 4.8 67 653-721 16-84 (99)
111 1jl3_A Arsenate reductase; alp 34.5 52 0.0018 30.2 5.5 107 654-778 31-138 (139)
112 1sqs_A Conserved hypothetical 34.2 77 0.0026 31.5 7.3 66 663-728 17-104 (242)
113 1t1v_A SH3BGRL3, SH3 domain-bi 32.6 38 0.0013 28.4 4.0 54 667-721 21-77 (93)
114 2bfd_B 2-oxoisovalerate dehydr 31.9 1.1E+02 0.0039 32.4 8.4 37 387-428 154-191 (342)
115 3u7r_A NADPH-dependent FMN red 31.1 1.1E+02 0.0036 29.8 7.4 63 664-726 18-90 (190)
116 2a5l_A Trp repressor binding p 31.1 77 0.0026 30.0 6.4 67 661-728 17-96 (200)
117 2wul_A Glutaredoxin related pr 30.8 87 0.003 28.2 6.2 64 652-720 19-92 (118)
118 1w85_B Pyruvate dehydrogenase 30.7 1.4E+02 0.0049 31.2 8.9 32 391-427 141-172 (324)
119 1u6t_A SH3 domain-binding glut 29.7 31 0.0011 31.4 3.0 55 666-721 18-81 (121)
120 2yan_A Glutaredoxin-3; oxidore 29.4 46 0.0016 28.5 4.0 68 653-721 17-89 (105)
121 1t0i_A YLR011WP; FMN binding p 28.6 1.2E+02 0.004 28.7 7.2 66 663-728 16-109 (191)
122 2fzv_A Putative arsenical resi 28.6 97 0.0033 32.1 7.0 64 665-728 76-148 (279)
123 3gx1_A LIN1832 protein; APC633 28.4 3.3E+02 0.011 24.5 10.4 111 654-777 6-125 (130)
124 2amj_A Modulator of drug activ 28.3 1.2E+02 0.004 29.6 7.2 60 666-727 35-94 (204)
125 3kkj_A Amine oxidase, flavin-c 28.3 38 0.0013 32.1 3.6 31 653-686 3-33 (336)
126 2ct6_A SH3 domain-binding glut 27.2 57 0.002 28.5 4.3 62 654-720 9-88 (111)
127 3hly_A Flavodoxin-like domain; 27.1 99 0.0034 28.7 6.2 51 658-711 5-59 (161)
128 3l4e_A Uncharacterized peptida 26.4 1.6E+02 0.0054 28.9 7.8 55 652-709 27-85 (206)
129 3f2v_A General stress protein 26.3 1.5E+02 0.0052 28.7 7.6 63 666-728 18-83 (192)
130 2jgd_A 2-oxoglutarate dehydrog 26.1 1.5E+02 0.0051 36.1 8.9 109 510-622 318-452 (933)
131 3rhb_A ATGRXC5, glutaredoxin-C 25.2 1.2E+02 0.0039 26.1 5.9 68 653-721 19-90 (113)
132 1rtt_A Conserved hypothetical 24.9 79 0.0027 30.1 5.2 61 667-728 26-97 (193)
133 4dik_A Flavoprotein; TM0755, e 24.7 1.7E+02 0.0059 31.8 8.4 71 657-727 269-343 (410)
134 3q2o_A Phosphoribosylaminoimid 24.5 1.3E+02 0.0046 32.0 7.5 75 650-731 12-99 (389)
135 3fwz_A Inner membrane protein 23.8 1.4E+02 0.0048 26.7 6.4 32 653-687 8-39 (140)
136 3lyu_A Putative hydrogenase; t 23.2 94 0.0032 28.4 5.1 50 651-700 17-67 (142)
137 2ab1_A Hypothetical protein; H 23.1 22 0.00076 32.4 0.7 40 648-687 57-98 (122)
138 1umd_B E1-beta, 2-OXO acid deh 22.9 3.1E+02 0.01 28.6 9.8 46 258-311 63-118 (324)
139 2fz5_A Flavodoxin; alpha/beta 22.8 1.5E+02 0.0051 25.9 6.3 65 657-728 3-73 (137)
140 5nul_A Flavodoxin; electron tr 22.7 1E+02 0.0034 27.4 5.2 44 661-711 10-53 (138)
141 3h8q_A Thioredoxin reductase 3 22.7 2.1E+02 0.0073 24.6 7.2 67 652-721 16-87 (114)
142 1fov_A Glutaredoxin 3, GRX3; a 22.3 1.4E+02 0.0049 23.3 5.6 70 655-727 3-73 (82)
143 2khp_A Glutaredoxin; thioredox 20.6 1.5E+02 0.0051 24.1 5.4 64 654-719 7-71 (92)
144 3llv_A Exopolyphosphatase-rela 20.1 1.8E+02 0.0062 25.7 6.4 33 652-687 6-38 (141)
145 1ydg_A Trp repressor binding p 20.0 1E+02 0.0036 29.6 5.0 68 661-728 18-103 (211)
No 1
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=6.5e-113 Score=1007.09 Aligned_cols=617 Identities=41% Similarity=0.670 Sum_probs=532.6
Q ss_pred CCCCCCccCCCCcccccCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHH
Q 003948 137 KPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYV 216 (784)
Q Consensus 137 ~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~ii~~v~~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~ 216 (784)
.+.||+|++|+.|.|+|+++.++|+++++++|+.+++++++++||+|+++|+++++.+||++|+.|+|+||||+||++|+
T Consensus 7 ~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~ 86 (629)
T 2o1x_A 7 TSDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVLDSPRDRILFDVGHQAYA 86 (629)
T ss_dssp CCSCTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHHTTSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEESSSTTCHH
T ss_pred CCCCchhhhCCChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCcCCCchhHHHHHHHHHhhcCCCCCeEEecCchHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999987999999999999999
Q ss_pred HHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHH
Q 003948 217 HKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM 296 (784)
Q Consensus 217 ~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAl 296 (784)
|++++|+.+.+.++||.+|++|||++.+++++.+++|++|+++|+|+|+|+|+++++++++|||++|||++++|++||||
T Consensus 87 ~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL 166 (629)
T 2o1x_A 87 HKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAAL 166 (629)
T ss_dssp HHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhh
Q 003948 297 NNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376 (784)
Q Consensus 297 n~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r 376 (784)
|+|+++++|+++|+|||++ ++ ..+++.+++.+++++.++.|..++.+.+.+.+.+|.+..+...+..++++
T Consensus 167 ~~A~~~~~pli~IvnnN~~-~i--------~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 237 (629)
T 2o1x_A 167 NTIGDMGRKMLIVLNDNEM-SI--------SENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTR 237 (629)
T ss_dssp HHHHHHCCSEEEEEEECSB-SS--------SBCCSSHHHHC---------------------------------------
T ss_pred HHHHhhCCCEEEEEECCCC-CC--------CCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999999999999986 32 23345566777777778888888887776665555443334444445555
Q ss_pred hccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccccccccccc
Q 003948 377 GLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGK 456 (784)
Q Consensus 377 ~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd~~~g~ 456 (784)
+++.+.+..+|++|||+++++|||||+++|.++++++++ .++|++||++|.||+|++++|+++.+||+.++|++.++.
T Consensus 238 ~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~ 315 (629)
T 2o1x_A 238 HFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD--LDGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGE 315 (629)
T ss_dssp ------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT--SSSEEEEEEECCTTTTCHHHHHCTTGGGSCCSBCTTTCC
T ss_pred hhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh--cCCCEEEEEEEecCCCCChhHcCCcccccCccCCcCcCc
Confidence 554443337899999999889999999999999999987 479999999999999999999988899999999998886
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCCeeEEE
Q 003948 457 QFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCA 536 (784)
Q Consensus 457 ~~~~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~ 536 (784)
..+. +..+|+++|+++|.+++++|++|+++++|+++++++..|+++||+||||+||+|++|+++|+|+|+.|+|||++
T Consensus 316 ~~~~--~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~ 393 (629)
T 2o1x_A 316 YVPS--SAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVA 393 (629)
T ss_dssp BCCC--CCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccc--chHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEE
Confidence 4222 25799999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCC
Q 003948 537 IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDR 616 (784)
Q Consensus 537 tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~ 616 (784)
+|++|++|++||+++++|++++||+++++++|++|+||+|||+.+|++++|++||++|++|+|++|++.++++|++ .++
T Consensus 394 ~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~-~~~ 472 (629)
T 2o1x_A 394 IYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDG 472 (629)
T ss_dssp EEHHHHGGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHH-SSS
T ss_pred ecHHHHHHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999988999999999999999999999999999999999999999998 489
Q ss_pred CeEEEcCCCCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHH
Q 003948 617 PSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL 696 (784)
Q Consensus 617 Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~ 696 (784)
|++||++|++.+..+. + ..+.+++||++++++|+|++||++|++++.|++|++.|+ +++|||++|++|||+++
T Consensus 473 Pv~i~~~r~~~~~~~~-~--~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~ 545 (629)
T 2o1x_A 473 PFAIRYPRGNTAQVPA-G--TWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEM 545 (629)
T ss_dssp CEEEECCSSBCCCCCT-T--CCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEEESCCHHH
T ss_pred CEEEEecCCCCCCCcc-c--ccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCCCCCcHHH
Confidence 9999999987543221 1 235678999999999999999999999999999999996 89999999999999999
Q ss_pred HHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 003948 697 IRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 775 (784)
Q Consensus 697 i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll 775 (784)
+.+++++++++|||||+. .||||++|++++.++++ +.+++++|++|.|+++|+.+++++++|+|+++|+++|++++
T Consensus 546 i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 622 (629)
T 2o1x_A 546 LREVGGRARALITVEDNTVVGGFGGAVLEALNSMNL---HPTVRVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAELG 622 (629)
T ss_dssp HHHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTTC---CCEEEEEEECSSCCCSCCHHHHHHHHTCSHHHHHHHHHHTT
T ss_pred HHHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhCC---CCCeEEEeeCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999997 69999999999998874 46899999999999999999999999999999999999987
Q ss_pred cC
Q 003948 776 GR 777 (784)
Q Consensus 776 ~~ 777 (784)
..
T Consensus 623 ~~ 624 (629)
T 2o1x_A 623 VD 624 (629)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 2
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.6e-112 Score=1002.84 Aligned_cols=616 Identities=46% Similarity=0.782 Sum_probs=506.5
Q ss_pred CCCCCCCccCCCCcccccCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHH
Q 003948 136 EKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAY 215 (784)
Q Consensus 136 ~~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~ii~~v~~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y 215 (784)
++|.+++|++|+.|.|+|+++.++|+++|+++|+.+++++++++||+++++|++|++++||++|+.|+|+||||+|||+|
T Consensus 4 ~~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y 83 (621)
T 2o1s_A 4 DIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAY 83 (621)
T ss_dssp CTTTSTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHSCGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCH
T ss_pred CCCCCchhhhcCChHHhhhCCHHHHHHHHHHHHHHHHHHHhhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999998799999999999999
Q ss_pred HHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHH
Q 003948 216 VHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEA 295 (784)
Q Consensus 216 ~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EA 295 (784)
+|++++|+.+++.++||.+|++|||++.+++++.+++|++|+++|+|+|+|+|+++++++++|||++|||++++|++|||
T Consensus 84 ~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~Ea 163 (621)
T 2o1s_A 84 PHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEA 163 (621)
T ss_dssp HHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHH
T ss_pred HHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh
Q 003948 296 MNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA 375 (784)
Q Consensus 296 ln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~ 375 (784)
||+|+++++|+++|||||++ ++ ..+++.++.++++++.++.|..++.+.+.+.+..+. ..++..+..++.
T Consensus 164 L~~A~~~~~pli~vvnnN~~-~i--------~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~-~~~~~~r~~~~~ 233 (621)
T 2o1s_A 164 MNHAGDIRPDMLVILNDNEM-SI--------SENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPP-IKELLKRTEEHI 233 (621)
T ss_dssp HHHHHHHCCSEEEEEEECC-------------------------------------------------------------
T ss_pred HHHHHhhCCCEEEEEeCCCc-cc--------CCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccch-HHHHHHHHHHHh
Confidence 99999999999999999986 32 223344556677777788887777665444322110 023444555555
Q ss_pred hhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCcccccccccc
Q 003948 376 RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTG 455 (784)
Q Consensus 376 r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd~~~g 455 (784)
+++.. +..+|++|||+++++|||||+++|.++++++++ .++|++||++|.||+|++++|+++.+||+.++|++.++
T Consensus 234 ~~~~~--p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~gP~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~ 309 (621)
T 2o1s_A 234 KGMVV--PGTLFEELGFNYIGPVDGHDVLGLITTLKNMRD--LKGPQFLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSG 309 (621)
T ss_dssp -------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH--SCSEEEEEEECCCTTCCCCC------------------
T ss_pred hhccC--hhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH--cCCCEEEEEEEecccCCChhhcCchhccCCCCCCCCcC
Confidence 55543 357899999999889999999999999999987 47999999999999999999988889999999999888
Q ss_pred cccCCCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCCeeEE
Q 003948 456 KQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFC 535 (784)
Q Consensus 456 ~~~~~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~ 535 (784)
.+.+.+....+|+++|+++|.+++++|++|+++++|++++++++.|+++||+||||+||+|++|+++|+|+|+.|++||+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~ 389 (621)
T 2o1s_A 310 CLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIV 389 (621)
T ss_dssp --------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhCCCceEecCcCHHHHHHHHHHHHHCCCEEEE
Confidence 64223334568999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred EecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCC
Q 003948 536 AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDD 615 (784)
Q Consensus 536 ~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~ 615 (784)
++|++|++|++||+++++|++++||+++++++|++|+||+|||+.+|++++|++|||+|++|+|++|+++++++|++..+
T Consensus 390 ~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~~ 469 (621)
T 2o1s_A 390 AIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYND 469 (621)
T ss_dssp EEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCCS
T ss_pred EehHhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999998658
Q ss_pred CCeEEEcCCCCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHH
Q 003948 616 RPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTD 695 (784)
Q Consensus 616 ~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e 695 (784)
+|++||++|++.+..+.|+ .+.+++||++++++|+|++|||+|++++.|++| ++||+++|||++|++|||++
T Consensus 470 ~Pv~i~~~r~~~~~~~~~~---~~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~~P~d~~ 541 (621)
T 2o1s_A 470 GPSAVRYPRGNAVGVELTP---LEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVDMRFVKPLDEA 541 (621)
T ss_dssp SCEEEECCSSBCCCCCCCC---CCCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEECCEEESCCHH
T ss_pred CCEEEEeCCCCCCCCCCCc---cccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEecCccCCCCHH
Confidence 9999999998764433332 256789999999999999999999999999999 35999999999999999999
Q ss_pred HHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 003948 696 LIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSL 774 (784)
Q Consensus 696 ~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~l 774 (784)
++.+++++++++|+|||+. .|||+++|++++.++++ +.+++++|++|.|+++|+++++++++|+|+++|+++|+++
T Consensus 542 ~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I~~~i~~~ 618 (621)
T 2o1s_A 542 LILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHRK---PVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAW 618 (621)
T ss_dssp HHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTTC---CCCEEEEEECSSCCCCSCHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcCC---CCCeEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999999999997 69999999999998874 4689999999999999999999999999999999999998
Q ss_pred hc
Q 003948 775 LG 776 (784)
Q Consensus 775 l~ 776 (784)
++
T Consensus 619 l~ 620 (621)
T 2o1s_A 619 LA 620 (621)
T ss_dssp HC
T ss_pred hc
Confidence 63
No 3
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=4.6e-100 Score=893.20 Aligned_cols=552 Identities=25% Similarity=0.409 Sum_probs=478.9
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCcHHHHHHHHhh-c----cCCC----CcEEEeCCCchH---HH
Q 003948 150 IHMKNLSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR-V----FNTP----DDKIIWDVGHQA---YV 216 (784)
Q Consensus 150 ~~~k~~~~~~L~~la~~iR~~ii~~v~~-~gGH~gsslg~~el~vaL~~-~----~~~p----~D~~i~s~GH~~---y~ 216 (784)
..+.+.+.++|+++|++||.++++++++ ++||+|++||++||+++||+ + +++| |||||||+||++ |+
T Consensus 3 ~~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly~ 82 (616)
T 3mos_A 3 HKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYA 82 (616)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHHH
Confidence 3566777899999999999999999985 66999999999999999984 3 3333 899999999999 89
Q ss_pred HHHHhCc--hHHhHHHHhcC-CCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCC-CCeEEEEEcCCcccchhh
Q 003948 217 HKILTGR--RSRMNTMRKTS-GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK-NNNVISVIGDGAMTAGQA 292 (784)
Q Consensus 217 ~~~l~G~--~~~l~~~r~~g-gl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~-~~~Vv~viGDGal~eG~~ 292 (784)
|++++|+ +++|.+|||+| +++|||++.++.+ .+++|++|+++|+|+|+|+|.++.+. +++|||++|||++++|++
T Consensus 83 ~~~l~G~~~~~~l~~~r~~~s~l~ghp~~~~~~~-d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~ 161 (616)
T 3mos_A 83 VWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFT-DVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSV 161 (616)
T ss_dssp HHHHTTSSCGGGGGGTTCTTCSCCSSCCTTSTTC-SSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHH
T ss_pred HHHHcCCCCHHHHHHhccCCCCCCCCCCCCCCcc-cccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcH
Confidence 9999996 68899999998 6999999876544 47999999999999999999997766 589999999999999999
Q ss_pred HHHHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHH
Q 003948 293 YEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (784)
Q Consensus 293 ~EAln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~ 371 (784)
|||||+|+++++ |+++|+|||++ ++.+ +..... ...++..+
T Consensus 162 ~Eal~~A~~~~l~~livi~nnN~~-~i~~-----~~~~~~-------------------------------~~~~~~~~- 203 (616)
T 3mos_A 162 WEAMAFASIYKLDNLVAILDINRL-GQSD-----PAPLQH-------------------------------QMDIYQKR- 203 (616)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSB-CSSS-----BCTTTT-------------------------------CHHHHHHH-
T ss_pred HHHHHHHHHcCCCcEEEEEECCCC-CCcC-----Cccccc-------------------------------ChHHHHHH-
Confidence 999999999995 68999999985 3311 111000 01233333
Q ss_pred HHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCcccc--
Q 003948 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVK-- 449 (784)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~-- 449 (784)
|++|||+++ +|||||+++|.++++++ .++|++||++|.||+|++.+|+ +.+|||.+.
T Consensus 204 ---------------~~a~G~~~~-~VdG~d~~~l~~al~~~----~~~P~lI~v~T~kg~G~~~~e~-~~~~Hg~~~~~ 262 (616)
T 3mos_A 204 ---------------CEAFGWHAI-IVDGHSVEELCKAFGQA----KHQPTAIIAKTFKGRGITGVED-KESWHGKPLPK 262 (616)
T ss_dssp ---------------HHHTTCEEE-EEETTCHHHHHHHHHSC----CSSCEEEEEECCTTTTSTTTTT-CSSCTTCCCCH
T ss_pred ---------------HHHcCCeEE-EEcCCCHHHHHHHHHhc----CCCCEEEEEEEecccccccccC-chhhcCCCCCH
Confidence 999999987 89999999999999655 3799999999999999987764 578999752
Q ss_pred ---------cc--cccccccCC------------------------CCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCC
Q 003948 450 ---------FD--PKTGKQFKT------------------------KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGG 494 (784)
Q Consensus 450 ---------fd--~~~g~~~~~------------------------~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~gg 494 (784)
++ .++++...+ .....+++++|+++|.+++++||+|+++++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~ 342 (616)
T 3mos_A 263 NMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKN 342 (616)
T ss_dssp HHHHHHHHHHHHTCCCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHH
T ss_pred HHHHHHHHHHHHHHHhhhhhCcCccchhhhhhhhhccccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCC
Confidence 10 022211100 0123467899999999999999999999999998
Q ss_pred CCChhhhHHhCCCCeeeccccHHHHHHHHHHHHhcCC-eeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCC
Q 003948 495 GTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGV-KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGA 572 (784)
Q Consensus 495 s~gl~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~-~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~ 572 (784)
+++++.|+++||+||||+||+|++|+++|+|+|+.|+ +|++.+|++|++|++|||++ .+++++||+++.+++|+ +|+
T Consensus 343 ~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dqi~~-~a~~~~~v~~v~~~~g~~~G~ 421 (616)
T 3mos_A 343 STFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRM-AAISESNINLCGSHCGVSIGE 421 (616)
T ss_dssp HHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHHHHH-HHHTTCCEEEEEESBSGGGCT
T ss_pred CcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHHHHH-HHHhCCCeEEEEECCCccccC
Confidence 8889999999999999999999999999999999997 79999999999999999976 58999999999999998 899
Q ss_pred CCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEcCCCCCccccCCCCCCCCCccccceeEeeeC
Q 003948 573 DGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEG 652 (784)
Q Consensus 573 dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG 652 (784)
||+|||+.+|+++|+++||++|++|+|++|+..++++|++ .++|+++|++|++.+... . ..+.+++||++++++|
T Consensus 422 dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~~~-~---~~~~~~~Gka~vl~eg 496 (616)
T 3mos_A 422 DGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAIIY-N---NNEDFQVGQAKVVLKS 496 (616)
T ss_dssp TCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBCCS-C---TTCCCCTTCCEEEECC
T ss_pred CCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCccC-C---CcccccCCeEEEEEeC
Confidence 9999999999999999999999999999999999999986 579999999998644221 1 1356779999999999
Q ss_pred Cc--EEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccC-CeEEEEcCCC-cCCcHHHHHHHHHh
Q 003948 653 DR--VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH-EILITVEEGS-VGGFGSHVCHFLTL 728 (784)
Q Consensus 653 ~d--vtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~-~~vVvvEe~~-~gG~gs~V~~~l~~ 728 (784)
.| ++||++|++++.|++|+++|+++||+++|||+++++|||+++|.++++++ +++|||||+. .||+|++|++++.+
T Consensus 497 ~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~~ 576 (616)
T 3mos_A 497 KDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVG 576 (616)
T ss_dssp SSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHTT
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHHh
Confidence 76 99999999999999999999999999999999999999999999999988 8999999996 69999999999988
Q ss_pred cCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHH
Q 003948 729 SGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 772 (784)
Q Consensus 729 ~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~ 772 (784)
++ +.+++++|++ .|+++|+++++++++|||+++|+++|+
T Consensus 577 ~~----~~~v~~~g~~-~f~~~g~~~~l~~~~gl~~~~I~~~i~ 615 (616)
T 3mos_A 577 EP----GITVTHLAVN-RVPRSGKPAELLKMFGIDRDAIAQAVR 615 (616)
T ss_dssp CT----TCEEEEEEEC-SCCCCSCHHHHHHHTTCSHHHHHHHHT
T ss_pred cC----CCCEEEEeCC-CCCCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 64 4689999999 599999999999999999999999885
No 4
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=1.8e-99 Score=886.74 Aligned_cols=536 Identities=22% Similarity=0.327 Sum_probs=461.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCcHHHHHHHHhhccC-C-------CCcEEEeCCCchH---HHHHHHhC
Q 003948 155 LSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHRVFN-T-------PDDKIIWDVGHQA---YVHKILTG 222 (784)
Q Consensus 155 ~~~~~L~~la~~iR~~ii~~v~~-~gGH~gsslg~~el~vaL~~~~~-~-------p~D~~i~s~GH~~---y~~~~l~G 222 (784)
|+.++|+++|++||.++++++++ ++||+|++||++|++++||++|+ + +|||||||+||++ |+|++|+|
T Consensus 1 ~~~~~l~~~a~~iR~~~i~~v~~a~~GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G 80 (632)
T 3l84_A 1 MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG 80 (632)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhC
Confidence 46789999999999999999985 89999999999999999988775 2 4899999999999 99999999
Q ss_pred ch---HHhHHHHhcCCC-CCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCC-------CCeEEEEEcCCcccchh
Q 003948 223 RR---SRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK-------NNNVISVIGDGAMTAGQ 291 (784)
Q Consensus 223 ~~---~~l~~~r~~ggl-~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~-------~~~Vv~viGDGal~eG~ 291 (784)
++ ++|.+|||.|++ +|||++ +++++.+++|++|+++|+|+|||+|.++++. +++|||++|||++++|+
T Consensus 81 ~~~~~~~l~~~r~~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~ 159 (632)
T 3l84_A 81 YDLSLEDLKNFRQLHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGI 159 (632)
T ss_dssp CSCCHHHHTTTTCTTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHH
T ss_pred CCCCHHHHHHHhcCCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhcc
Confidence 94 789999999995 799999 9999999999999999999999999998864 89999999999999999
Q ss_pred hHHHHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHH
Q 003948 292 AYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (784)
Q Consensus 292 ~~EAln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k 370 (784)
+|||+++|+++++ |+|+|+|||++ ++.. +. ... ..+++.
T Consensus 160 ~~Eal~~A~~~~L~~livi~nnN~~-~i~~-----~~---~~~-----------------------------~~~d~~-- 199 (632)
T 3l84_A 160 SYEACSLAGLHKLDNFILIYDSNNI-SIEG-----DV---GLA-----------------------------FNENVK-- 199 (632)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSE-ETTE-----EG---GGT-----------------------------CCCCHH--
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCc-cccc-----ch---hhh-----------------------------cChhHH--
Confidence 9999999999995 69999999996 3311 11 000 002333
Q ss_pred HHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc--
Q 003948 371 VDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV-- 448 (784)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~-- 448 (784)
.+|++|||+++ +|||||+++|.++++++++ .++|++||++|.||+|++++|+. .+|||.+
T Consensus 200 --------------~~~~a~G~~~~-~vdGhd~~~l~~al~~A~~--~~~P~lI~v~T~kG~G~~~~e~~-~~~Hg~~l~ 261 (632)
T 3l84_A 200 --------------MRFEAQGFEVL-SINGHDYEEINKALEQAKK--STKPCLIIAKTTIAKGAGELEGS-HKSHGAPLG 261 (632)
T ss_dssp --------------HHHHHTTCEEE-EEETTCHHHHHHHHHHHHT--CSSCEEEEEECCTTTTCGGGTTC-GGGSSSCCC
T ss_pred --------------HHHHHcCCeEE-EEeeCCHHHHHHHHHHHHh--CCCCEEEEEeeEeeecCCCCCCc-ccccCCCCC
Confidence 34999999998 8999999999999999987 58999999999999999997764 6899986
Q ss_pred -----------------cccccc------------cccc---------------------CC----------CCchhhHH
Q 003948 449 -----------------KFDPKT------------GKQF---------------------KT----------KSPTLTYT 468 (784)
Q Consensus 449 -----------------~fd~~~------------g~~~---------------------~~----------~~~~~s~~ 468 (784)
+|++.+ |++. +. .......+
T Consensus 262 ~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~a~r 341 (632)
T 3l84_A 262 EEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDLATR 341 (632)
T ss_dssp HHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSTTCCCCCCTTCCBCHH
T ss_pred HHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhcccCchhhhhhCccchhhhcchhccccchHHH
Confidence 565422 1100 00 01245678
Q ss_pred HHHHHHHHHHHhhCCCEEEEecCCCCCCChh-hhHHhC-CCCeeeccccHHHHHHHHHHHHhc-CCeeEEEecHhHHHHH
Q 003948 469 QYFAESLIKEAETDDKIVAIHAAMGGGTGLN-YFQKRF-PDRCFDVGIAEQHAVTFAAGLASE-GVKPFCAIYSSFLQRG 545 (784)
Q Consensus 469 ~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~-~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~tys~Fl~ra 545 (784)
++++++|.++++.+|+++++++|++++++.. .+.++| |+||||+||+||+|+++|+|||+. |++||++||++|++|+
T Consensus 342 ~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~f~~F~~~~ 421 (632)
T 3l84_A 342 DSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSATFFIFSEYL 421 (632)
T ss_dssp HHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEecccCCccCcchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHHH
Confidence 8999999999999999999999998666443 123678 999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q 003948 546 YDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR 624 (784)
Q Consensus 546 ~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl~r 624 (784)
+||| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|++|++.++++|++ .++|++||++|
T Consensus 422 ~~~i-r~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~r 499 (632)
T 3l84_A 422 KPAA-RIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLSR 499 (632)
T ss_dssp HHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECCS
T ss_pred HHHH-HHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEcC
Confidence 9998 5799999999999977776 7999999999999999999999999999999999999999998 78999999999
Q ss_pred CCCccccCCCCCCCCCccccce-eEeee--CCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHH--HHH
Q 003948 625 GNGIGAVLPPNNKGTPLEIGKG-RILME--GDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL--IRQ 699 (784)
Q Consensus 625 ~~~~~~~~p~~~~~~~~~igk~-~vlre--G~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~--i~~ 699 (784)
++. ++.. ..+..+++++ +++++ |+|++||++|++++.|++|+++|+++||+++|||++|++|||++. +.+
T Consensus 500 ~~~----~~~~-~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~~ 574 (632)
T 3l84_A 500 QKL----KALN-EPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQE 574 (632)
T ss_dssp SCB----CCCC-CCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSBHHHHHTSCHHHHH
T ss_pred CCC----CCCc-cccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecCcCCCcchhHHHHHH
Confidence 875 2321 1234567777 99999 899999999999999999999999999999999999999999873 444
Q ss_pred HhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 003948 700 LANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 773 (784)
Q Consensus 700 ~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ 773 (784)
.+.+ +.+|+||++...||++.+ . +++|+ |+|++||+.+++++++|||+++|+++|++
T Consensus 575 sv~~-~~vv~vE~~~~~g~~~~~--------------~-~~iGi-d~Fg~sg~~~~l~~~~Glt~~~I~~~i~~ 631 (632)
T 3l84_A 575 RLLK-GEVIGVEAAHSNELYKFC--------------H-KVYGI-ESFGESGKDKDVFERFGFSVSKLVNFILS 631 (632)
T ss_dssp HHCC-SEEEEECSSCCGGGGGTC--------------S-EEECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHTT
T ss_pred HhcC-CCEEEEeCChhhhHHHHh--------------C-eEEEc-CCCcccCCHHHHHHHhCcCHHHHHHHHhh
Confidence 4444 679999999877775211 1 67898 99999999999999999999999999864
No 5
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.7e-99 Score=890.15 Aligned_cols=545 Identities=19% Similarity=0.283 Sum_probs=469.6
Q ss_pred HHHHHHHH-HHHHHHHHHHhhc-cCCCCCCCCcHHHHHHHHhh-ccC-C-------CCcEEEeCCCchH---HHHHHHhC
Q 003948 157 TEDLEQLA-AELRADIVNSVSK-TGGHLSANLGVVELTLALHR-VFN-T-------PDDKIIWDVGHQA---YVHKILTG 222 (784)
Q Consensus 157 ~~~L~~la-~~iR~~ii~~v~~-~gGH~gsslg~~el~vaL~~-~~~-~-------p~D~~i~s~GH~~---y~~~~l~G 222 (784)
.++|+++| ++||.++++|+++ ++||+|++||++|++++||+ +|+ + +|||||||+||++ |+|++|+|
T Consensus 19 ~~~l~~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 98 (700)
T 3rim_A 19 WTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGG 98 (700)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhC
Confidence 46799999 8999999999985 68999999999999999996 775 3 3899999999999 99999999
Q ss_pred c---hHHhHHHHhcCC-CCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHh-------------CCCCeEEEEEcCC
Q 003948 223 R---RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDIL-------------GKNNNVISVIGDG 285 (784)
Q Consensus 223 ~---~~~l~~~r~~gg-l~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~-------------g~~~~Vv~viGDG 285 (784)
+ .++|.+|||.|+ ++|||++.+++++.+++|++|+++|+|+|||+|.|++ +.+++|||++|||
T Consensus 99 ~~~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 99 FGLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp SSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred CCCCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 9 789999999998 5999999889999999999999999999999999986 5689999999999
Q ss_pred cccchhhHHHHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCch
Q 003948 286 AMTAGQAYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQT 364 (784)
Q Consensus 286 al~eG~~~EAln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~ 364 (784)
+++||++|||+|+|+.+++ |||+|+|||++ ++.+ ++.. . ..
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~-si~~-----~~~~--~------------------------------~~ 220 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQI-SIED-----DTNI--A------------------------------LC 220 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSE-ETTE-----EGGG--T------------------------------CC
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCc-cccc-----chhh--c------------------------------cc
Confidence 9999999999999999996 69999999995 3322 1110 0 01
Q ss_pred HHHHHHHHHHhhhccCCCchhhhhhcCCeEEeec-CCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccc
Q 003948 365 HEVAAKVDEYARGLISASGSTFFEELGLYYIGPV-DGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADR 443 (784)
Q Consensus 365 ~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~v-DGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~ 443 (784)
+++..+ |++|||+++ .| ||||+++|.++++++++. .++|++|+++|+||+|++++|+. .+
T Consensus 221 ~~~~~~----------------~~a~G~~~~-~V~DG~D~~al~~Al~~A~~~-~~~P~lI~~~T~kG~G~~~~e~~-~~ 281 (700)
T 3rim_A 221 EDTAAR----------------YRAYGWHVQ-EVEGGENVVGIEEAIANAQAV-TDRPSFIALRTVIGYPAPNLMDT-GK 281 (700)
T ss_dssp CCHHHH----------------HHHHTCEEE-EEECTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTTS-HH
T ss_pred hhHHHH----------------HHHcCCeEE-EECCCCCHHHHHHHHHHHHHc-CCCCEEEEEEEEeeecCCccCCC-cc
Confidence 344444 999999998 57 999999999999999873 57999999999999999999865 67
Q ss_pred cCcccc-------------------ccccc------------cc------------------------------ccC---
Q 003948 444 MHGVVK-------------------FDPKT------------GK------------------------------QFK--- 459 (784)
Q Consensus 444 ~Hg~~~-------------------fd~~~------------g~------------------------------~~~--- 459 (784)
|||.++ |++.+ |+ +++
T Consensus 282 ~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~ 361 (700)
T 3rim_A 282 AHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGW 361 (700)
T ss_dssp HHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTT
T ss_pred ccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCCcch
Confidence 898653 44321 11 000
Q ss_pred ----C----CCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCC-----hhhhHHhC------C----CCeeeccccH
Q 003948 460 ----T----KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG-----LNYFQKRF------P----DRCFDVGIAE 516 (784)
Q Consensus 460 ----~----~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~g-----l~~f~~~~------p----~R~~d~GIaE 516 (784)
+ ..+..+++++|+++|.+++++||+|+++++|++++++ +..|+++| | +||||+||+|
T Consensus 362 ~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE 441 (700)
T 3rim_A 362 DADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVRE 441 (700)
T ss_dssp TSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCH
T ss_pred hhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccH
Confidence 0 0134578999999999999999999999999987765 46888888 8 5999999999
Q ss_pred HHHHHHHHHHHhc-CCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEE
Q 003948 517 QHAVTFAAGLASE-GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVV 594 (784)
Q Consensus 517 ~~~vg~AaGlA~~-G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V 594 (784)
|+|+++|+|||++ |++||++||+.|+.++++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|
T Consensus 442 ~~mv~~A~GlA~~gG~~Pv~~tF~~F~d~~~~~i-r~~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~V 520 (700)
T 3rim_A 442 HAMGAILSGIVLHGPTRAYGGTFLQFSDYMRPAV-RLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSV 520 (700)
T ss_dssp HHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHhcCCCCCEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCEE
Confidence 9999999999999 99999999999998888896 6799999999999987776 7999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHHhCC--CCeEEEcCCCCCccccCCCCCCCCCccccceeEeeeCC--------cEEEEEechhH
Q 003948 595 MAPSDEAELMHMVATAAVIDD--RPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD--------RVAILGYGSIV 664 (784)
Q Consensus 595 ~~Psd~~E~~~~l~~A~~~~~--~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG~--------dvtIva~Gs~v 664 (784)
++|+|++|++.+|++|++..+ +|++||++|++++. ++.. ..+.+++|+ +++++|+ ||+||++|+++
T Consensus 521 ~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~--~~~~-~~~~~~~G~-~vlr~g~~~~~~~~~dvtiia~G~~v 596 (700)
T 3rim_A 521 VRPADANETAYAWRTILARRNGSGPVGLILTRQGVPV--LDGT-DAEGVARGG-YVLSDAGGLQPGEEPDVILIATGSEV 596 (700)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECC--CTTC-CHHHHHHSC-EEEECCSCCCTTCCCSEEEEECGGGH
T ss_pred EeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCC--cCcc-cccccCCCc-EEEecCCccccCCCCCEEEEEechHH
Confidence 999999999999999998666 79999999987542 2221 124567787 8999987 99999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEeeccccCCCcH---HHHHHHhcc-CCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEE
Q 003948 665 QQCVLAANMLKSQDISVTVADARFCKPLDT---DLIRQLANE-HEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRS 740 (784)
Q Consensus 665 ~~aleAae~L~~~GI~v~VId~~slkPlD~---e~i~~~~~~-~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~ 740 (784)
+.|++|++.|+++||+++|||+||++|||. +++.+++++ ++.+|+||++...||. +++.+++ ++
T Consensus 597 ~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~~----~~~~~~~--------~~ 664 (700)
T 3rim_A 597 QLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWH----QLVGDTG--------EI 664 (700)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGGH----HHHCTTC--------EE
T ss_pred HHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhHH----HHHhcCC--------cE
Confidence 999999999999999999999999999998 566666664 7889999999876664 4554432 47
Q ss_pred eecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 003948 741 MVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 741 lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll~ 776 (784)
+|+ |+|++||+++++++++|||+++|+++|+++++
T Consensus 665 igi-d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l~ 699 (700)
T 3rim_A 665 VSI-EHYGESADHKTLFREYGFTAEAVAAAAERALD 699 (700)
T ss_dssp ECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred Ecc-CcCcCcCCHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 888 99999999999999999999999999999874
No 6
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.4e-98 Score=886.05 Aligned_cols=553 Identities=20% Similarity=0.311 Sum_probs=460.4
Q ss_pred ccCCCHHHHHHHH-HHHHHHHHHHhhc-cCCCCCCCCcHHHHHHHHhh-ccC--------CCCcEEEeCCCchH---HHH
Q 003948 152 MKNLSTEDLEQLA-AELRADIVNSVSK-TGGHLSANLGVVELTLALHR-VFN--------TPDDKIIWDVGHQA---YVH 217 (784)
Q Consensus 152 ~k~~~~~~L~~la-~~iR~~ii~~v~~-~gGH~gsslg~~el~vaL~~-~~~--------~p~D~~i~s~GH~~---y~~ 217 (784)
++|+..++|+++| ++||.++++|+++ ++||+|++||++||+++||+ +|+ .+|||||||+||++ |+|
T Consensus 21 ~~~~~~~~l~~~a~~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~ 100 (690)
T 3m49_A 21 QSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSL 100 (690)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHHH
Confidence 5777778899999 8999999999985 89999999999999999994 654 14899999999999 999
Q ss_pred HHHhCc---hHHhHHHHhcCCC-CCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCC----------CCeEEEEEc
Q 003948 218 KILTGR---RSRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIG 283 (784)
Q Consensus 218 ~~l~G~---~~~l~~~r~~ggl-~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~----------~~~Vv~viG 283 (784)
++|+|+ .++|.+|||.|++ +|||++.+++++.+++|++|+++|+|+|||+|.++++. +++|||++|
T Consensus 101 l~l~G~~~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~G 180 (690)
T 3m49_A 101 LHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICG 180 (690)
T ss_dssp HHHTTSSCCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEEC
T ss_pred HHHHCCCCCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEEC
Confidence 999999 7899999999996 69999999999999999999999999999999998764 899999999
Q ss_pred CCcccchhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCC
Q 003948 284 DGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGG 362 (784)
Q Consensus 284 DGal~eG~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~ 362 (784)
||++++|++|||+++|++++ .|+|+|+|||++ ++. ++.. ..
T Consensus 181 DG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~-~i~-----~~~~---~~----------------------------- 222 (690)
T 3m49_A 181 DGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDI-SLD-----GDLN---RS----------------------------- 222 (690)
T ss_dssp HHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSB-CSS-----SBGG---GT-----------------------------
T ss_pred chhhhhccHHHHHHHHHHhCCCeEEEEEECCCe-ecc-----cchh---hc-----------------------------
Confidence 99999999999999999999 569999999996 332 1110 00
Q ss_pred chHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhccc
Q 003948 363 QTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAAD 442 (784)
Q Consensus 363 ~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~ 442 (784)
..+++.. +|++|||+++.++||||+++|.++++++++. .++|++|||+|+||+|++++|+ +.
T Consensus 223 ~~~d~~~----------------~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~-~~~P~lI~v~T~kG~G~~~~~~-~~ 284 (690)
T 3m49_A 223 FSESVED----------------RYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD-EKRPTLIEVRTTIGFGSPNKSG-KS 284 (690)
T ss_dssp CCCCHHH----------------HHHHHTCEEEEESCTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT-SG
T ss_pred cchhHHH----------------HHHHcCCcEEEEecCCCHHHHHHHHHHHHhc-CCCCEEEEEEeecccccCcccC-cc
Confidence 0123333 4999999998666999999999999999862 4799999999999999987665 57
Q ss_pred ccCccc-------------------cccccccc-----c--------------------------------------cC-
Q 003948 443 RMHGVV-------------------KFDPKTGK-----Q--------------------------------------FK- 459 (784)
Q Consensus 443 ~~Hg~~-------------------~fd~~~g~-----~--------------------------------------~~- 459 (784)
+|||.+ +|++.++. + ++
T Consensus 285 ~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp~ 364 (690)
T 3m49_A 285 ASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLPE 364 (690)
T ss_dssp GGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCT
T ss_pred cccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCch
Confidence 899986 46654330 0 00
Q ss_pred ------C---CCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh-----hhhHHh-CCCCeeeccccHHHHHHHHH
Q 003948 460 ------T---KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKR-FPDRCFDVGIAEQHAVTFAA 524 (784)
Q Consensus 460 ------~---~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl-----~~f~~~-~p~R~~d~GIaE~~~vg~Aa 524 (784)
+ ..+..+++++++++|.++++++|+++++++|++++++. ++|+++ +|+||||+||+||+|+++|+
T Consensus 365 ~~~~~~~~~~~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~ 444 (690)
T 3m49_A 365 GWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMN 444 (690)
T ss_dssp TGGGGCCCCCTTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHH
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHH
Confidence 0 01234788999999999999999999999999876554 467765 58999999999999999999
Q ss_pred HHHhc-CCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHH
Q 003948 525 GLASE-GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAE 602 (784)
Q Consensus 525 GlA~~-G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E 602 (784)
|||++ |++||++||..|+.++..|| +++|++++||+++++++|+ +|+||+|||+++|+++||+||||+|++|+|++|
T Consensus 445 GlA~~gG~~P~~~tf~~Fs~f~~~ai-r~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~E 523 (690)
T 3m49_A 445 GIALHGGLKTYGGTFFVFSDYLRPAI-RLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNE 523 (690)
T ss_dssp HHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHHH
T ss_pred HHHHcCCCEEEEEecHHHHHHHHHHH-HHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHHH
Confidence 99999 89999998766654444455 6789999999999999998 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEcCCCCCccccCCCCCCCCCccccceeEeeeCC----cEEEEEechhHHHHHHHHHHHhcCC
Q 003948 603 LMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD----RVAILGYGSIVQQCVLAANMLKSQD 678 (784)
Q Consensus 603 ~~~~l~~A~~~~~~Pv~irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG~----dvtIva~Gs~v~~aleAae~L~~~G 678 (784)
++.+|++|++..++|++||++|++++..........+.++.|+ +++++|+ |++||++|++++.|++|+++|+++|
T Consensus 524 ~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~Al~Aa~~L~~~G 602 (690)
T 3m49_A 524 SVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLAVEAQKALAVDG 602 (690)
T ss_dssp HHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCEEEEeecccCCCCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHHHHHHHHHHhcC
Confidence 9999999998668999999999875421100000013455666 7899985 9999999999999999999999999
Q ss_pred CcEEEeeccccCCCcH---HHHHHHh-ccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHH
Q 003948 679 ISVTVADARFCKPLDT---DLIRQLA-NEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPA 754 (784)
Q Consensus 679 I~v~VId~~slkPlD~---e~i~~~~-~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~ 754 (784)
|+++|||+||++|||. +++.+++ ++++.+|+||++...||. +++...+ ..+|+ |+|+.+|+++
T Consensus 603 I~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~----~~~~~~~--------~~igi-d~Fg~sg~~~ 669 (690)
T 3m49_A 603 VDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWH----RYVGLEG--------DVLGI-DTFGASAPGE 669 (690)
T ss_dssp CCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTH----HHHTTTC--------EEECC-CSCCCSSCHH
T ss_pred CCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhHH----HHhccCC--------CEEcc-CcCcCcCCHH
Confidence 9999999999999885 5555666 357889999999876775 4554332 35787 9999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHh
Q 003948 755 DQLEESGLSSRHISATVLSLL 775 (784)
Q Consensus 755 elle~~gl~~~~I~~~i~~ll 775 (784)
++++++|||+++|+++|++++
T Consensus 670 ~l~~~~Glt~e~I~~~i~~~l 690 (690)
T 3m49_A 670 KIMEEYGFTVENVVRKVKEML 690 (690)
T ss_dssp HHHHHTTCSHHHHHHHHHHHC
T ss_pred HHHHHHCcCHHHHHHHHHHhC
Confidence 999999999999999999864
No 7
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=3.6e-97 Score=872.28 Aligned_cols=548 Identities=20% Similarity=0.297 Sum_probs=459.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCcHHHHHHHHhh---ccCC------CCcEEEeCCCchH---HHHHHHhC
Q 003948 156 STEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFNT------PDDKIIWDVGHQA---YVHKILTG 222 (784)
Q Consensus 156 ~~~~L~~la~~iR~~ii~~v~~-~gGH~gsslg~~el~vaL~~---~~~~------p~D~~i~s~GH~~---y~~~~l~G 222 (784)
++..++++|++||.++++|+++ ++||+|++||++||+++||+ .||. ||||||||+||++ |++++|+|
T Consensus 2 ~~~~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 81 (663)
T 3kom_A 2 SLSIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTG 81 (663)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhC
Confidence 3344678999999999999985 89999999999999999963 4542 5899999999999 99999999
Q ss_pred c---hHHhHHHHhcCCC-CCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCC----------CCeEEEEEcCCccc
Q 003948 223 R---RSRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMT 288 (784)
Q Consensus 223 ~---~~~l~~~r~~ggl-~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~----------~~~Vv~viGDGal~ 288 (784)
+ .++|.+|||.|++ +|||++..++++.+++|++|+++|+|+|||+|.++++. +++|||++|||+++
T Consensus 82 ~~~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~ 161 (663)
T 3kom_A 82 YDLSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLM 161 (663)
T ss_dssp CSCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHH
T ss_pred CCCCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhh
Confidence 9 3889999999985 79999988999999999999999999999999998764 79999999999999
Q ss_pred chhhHHHHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHH
Q 003948 289 AGQAYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEV 367 (784)
Q Consensus 289 eG~~~EAln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~ 367 (784)
+|++||||++|+++++ |+|+|+|||++ ++. ++.. .. ..+++
T Consensus 162 eG~~~Eal~~A~~~~L~~livi~dnN~~-~i~-----~~~~---~~-----------------------------~~~d~ 203 (663)
T 3kom_A 162 EGVSHEACSLAGTLGLNKLVAFWDDNNI-SID-----GDTK---GW-----------------------------FSDNT 203 (663)
T ss_dssp SHHHHHHHHHHHHHTCTTEEEEEEECC-----------CGG---GT-----------------------------CCCCH
T ss_pred hchHHHHHHHHHHhCCCeEEEEEECCCc-ccc-----cchh---hh-----------------------------cchhH
Confidence 9999999999999995 59999999996 331 1111 00 00233
Q ss_pred HHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCcc
Q 003948 368 AAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGV 447 (784)
Q Consensus 368 ~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~ 447 (784)
. .+|++|||+++++|||||+++|.++++++++. .++|++||++|.||+|++++|+. .+|||.
T Consensus 204 ~----------------~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~~~e~~-~~~Hg~ 265 (663)
T 3kom_A 204 P----------------ERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ-QQKPTLICCKTVIGFGSPEKAGT-ASVHGS 265 (663)
T ss_dssp H----------------HHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-SSSCEEEEEECCTTTTCTTTTTC-SSTTSS
T ss_pred H----------------HHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc-CCCCEEEEEecccccccCCCCCC-ccccCC
Confidence 3 34999999998889999999999999999863 47999999999999999998765 578987
Q ss_pred c------------------ccccccc-----------cc----------------------------cC-----------
Q 003948 448 V------------------KFDPKTG-----------KQ----------------------------FK----------- 459 (784)
Q Consensus 448 ~------------------~fd~~~g-----------~~----------------------------~~----------- 459 (784)
+ +|+..++ +. ++
T Consensus 266 ~l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~ 345 (663)
T 3kom_A 266 PLSDQERASAAKELNWDYQAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSKELPVGLESAINDYI 345 (663)
T ss_dssp CCCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHTCCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCCccCChhHHHHHHHHhhcchhhHHHHHHHHHhhcchHHHHHHHHhccCCCcchhhhhhhhh
Confidence 4 4554322 00 00
Q ss_pred ----CCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh-----hhhH-HhCCCCeeeccccHHHHHHHHHHHHhc
Q 003948 460 ----TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQ-KRFPDRCFDVGIAEQHAVTFAAGLASE 529 (784)
Q Consensus 460 ----~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl-----~~f~-~~~p~R~~d~GIaE~~~vg~AaGlA~~ 529 (784)
.+.+..+++++++++|.++++.+|+++++++|++++++. .+|+ ++||+||||+||+|++|+++|+|||++
T Consensus 346 ~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~v~~a~GlA~~ 425 (663)
T 3kom_A 346 ASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIMNGLSLY 425 (663)
T ss_dssp HHHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCSTTCCEEECCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccCCCCeEecCccHHHHHHHHHHHHHc
Confidence 012335678999999999999999999999999877654 2574 899999999999999999999999999
Q ss_pred -CCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHH
Q 003948 530 -GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMV 607 (784)
Q Consensus 530 -G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l 607 (784)
|++||++||++|++++++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|++|++.++
T Consensus 426 gG~~P~~~tf~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~l 504 (663)
T 3kom_A 426 GGIKPYGGTFLVFSDYSRNAI-RMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETMIAW 504 (663)
T ss_dssp SSCEEEEEEEGGGHHHHHHHH-HHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHHHHHH
T ss_pred CCCEEEEEehHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHHHHHH
Confidence 99999999999999999998 6799999999999877666 79999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEcCCCCCccccCCCCCCC-CCccccceeEeee--CCcEEEEEechhHHHHHHHHHHHhcCCCcEEEe
Q 003948 608 ATAAVIDDRPSCFRFPRGNGIGAVLPPNNKG-TPLEIGKGRILME--GDRVAILGYGSIVQQCVLAANMLKSQDISVTVA 684 (784)
Q Consensus 608 ~~A~~~~~~Pv~irl~r~~~~~~~~p~~~~~-~~~~igk~~vlre--G~dvtIva~Gs~v~~aleAae~L~~~GI~v~VI 684 (784)
++|+++.++|++||++|++++. ++..... +.++.| ++++++ |+|++||++|++++.|++|+++|+++||+++||
T Consensus 505 ~~A~~~~~~Pv~ir~~r~~~p~--~~~~~~~~~~~~~G-~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi 581 (663)
T 3kom_A 505 KEAVKSKDTPSVMVLTRQNLMP--VVQTQHQVANIARG-GYLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNVA 581 (663)
T ss_dssp HHHHHCSSCCEEEECCSSEECC--CCCCHHHHHHHTTT-CEEEECCTTCSCEEEECTTHHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHhCCCCEEEEccCccCCC--cCccccchhcccCc-eEEEEecCCCCEEEEEecHHHHHHHHHHHHHHhcCCCeEEE
Confidence 9999867899999999986532 1110000 123444 478888 789999999999999999999999999999999
Q ss_pred eccccCCCcHHH---HHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcC
Q 003948 685 DARFCKPLDTDL---IRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESG 761 (784)
Q Consensus 685 d~~slkPlD~e~---i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~g 761 (784)
|++|++|||++. +.++++....+|++|++...||.+.+ . | ..-..+|+ |+|+.+|+.++++++||
T Consensus 582 ~~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~~g~~~~~----g--G-----~~~~~igi-d~Fg~sg~~~~l~~~~G 649 (663)
T 3kom_A 582 SIPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQPDMWYKYM----P--K-----AGGEVKGI-YSFGESAPAEDLFKRFG 649 (663)
T ss_dssp ECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCGGGGGGC----C--T-----TCEEEECC-CSCCCSSCHHHHHHHHT
T ss_pred EcCcCCcccccHHHHHHHhcCCCCeEEEEecCCcccHHHHh----c--c-----cCCcEEEe-cCCcCCCCHHHHHHHHC
Confidence 999999999976 45566666689999998877887432 1 1 22367898 99999999999999999
Q ss_pred CCHHHHHHHHHHHh
Q 003948 762 LSSRHISATVLSLL 775 (784)
Q Consensus 762 l~~~~I~~~i~~ll 775 (784)
||+++|++++++++
T Consensus 650 lt~e~I~~~~~~~~ 663 (663)
T 3kom_A 650 FTVENISNIVAKYV 663 (663)
T ss_dssp CSHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHhhC
Confidence 99999999998753
No 8
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1.7e-96 Score=871.74 Aligned_cols=550 Identities=23% Similarity=0.329 Sum_probs=473.0
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCcHHHHHHHHhh---ccC------CCCcEEEeCCCchH---H
Q 003948 149 PIHMKNLSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFN------TPDDKIIWDVGHQA---Y 215 (784)
Q Consensus 149 p~~~k~~~~~~L~~la~~iR~~ii~~v~~-~gGH~gsslg~~el~vaL~~---~~~------~p~D~~i~s~GH~~---y 215 (784)
|.+.|+|+.++|+++|++||.++++|+++ ++||+|++||++|++++||+ .|| .++||||||+||++ |
T Consensus 5 ~~~~~~l~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lY 84 (675)
T 1itz_A 5 TLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQY 84 (675)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHH
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHHHH
Confidence 56789999999999999999999999986 89999999999999999984 554 25899999999999 9
Q ss_pred HHHHHhCch----HHhHHHHhcCCC-CCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhC----------CCCeEEE
Q 003948 216 VHKILTGRR----SRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVIS 280 (784)
Q Consensus 216 ~~~~l~G~~----~~l~~~r~~ggl-~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g----------~~~~Vv~ 280 (784)
+|++|+|++ ++|.+|||.|++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||
T Consensus 85 a~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~ 164 (675)
T 1itz_A 85 ALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYV 164 (675)
T ss_dssp HHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEE
T ss_pred HHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEE
Confidence 999999995 889999999996 8999998999999999999999999999999999887 7899999
Q ss_pred EEcCCcccchhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhh
Q 003948 281 VIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQ 359 (784)
Q Consensus 281 viGDGal~eG~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~ 359 (784)
++|||++++|++|||+++|++++ .|+|+|+|||++ ++.. +... .+
T Consensus 165 i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~-~i~~-----~~~~--~~-------------------------- 210 (675)
T 1itz_A 165 ILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHI-SIDG-----DTEI--AF-------------------------- 210 (675)
T ss_dssp EECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE-ETTE-----EGGG--TC--------------------------
T ss_pred EECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCc-cCCC-----Chhh--hc--------------------------
Confidence 99999999999999999999999 589999999996 3211 1100 00
Q ss_pred cCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCC-CHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhh
Q 003948 360 IGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGH-NVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAE 438 (784)
Q Consensus 360 ~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGh-d~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae 438 (784)
.+++. .+|++|||+++++|||| |+++|.++++++++. .++|++||++|.||+|++++|
T Consensus 211 ----~~d~~----------------~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~ 269 (675)
T 1itz_A 211 ----TEDVS----------------TRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSPNKA 269 (675)
T ss_dssp ----CSCHH----------------HHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT
T ss_pred ----ChhHH----------------HHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHC-CCCeEEEEEeeecccCccccc
Confidence 02233 34999999998889999 999999999999863 479999999999999999887
Q ss_pred hcccccCcc------------------ccccccccc------------------------------ccC-----------
Q 003948 439 AAADRMHGV------------------VKFDPKTGK------------------------------QFK----------- 459 (784)
Q Consensus 439 ~~~~~~Hg~------------------~~fd~~~g~------------------------------~~~----------- 459 (784)
+. .+||+. .+|+..++. ++.
T Consensus 270 ~~-~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (675)
T 1itz_A 270 NS-YSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGEL 348 (675)
T ss_dssp TS-GGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCCC
T ss_pred Cc-ccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhcccC
Confidence 54 689997 356553220 000
Q ss_pred ------------CCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh-----hhhHH-hCCCCeeeccccHHHHHH
Q 003948 460 ------------TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQK-RFPDRCFDVGIAEQHAVT 521 (784)
Q Consensus 460 ------------~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl-----~~f~~-~~p~R~~d~GIaE~~~vg 521 (784)
...+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|++
T Consensus 349 p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~R~id~gIaE~~~v~ 428 (675)
T 1itz_A 349 PTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMGA 428 (675)
T ss_dssp CTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHHH
T ss_pred CchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCCCCCeEeecccHHHHHH
Confidence 112346789999999999999999999999999876654 35887 999999999999999999
Q ss_pred HHHHHHhcC--CeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecC
Q 003948 522 FAAGLASEG--VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPS 598 (784)
Q Consensus 522 ~AaGlA~~G--~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Ps 598 (784)
+|+|||++| ++||++||++|+.++++|| +++|++++||++++++.|+ +|+||+|||+++|++++|++|||+|++|+
T Consensus 429 ~a~GlA~~G~~~~P~~~t~~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pa 507 (675)
T 1itz_A 429 ICNGIALHSPGFVPYCATFFVFTDYMRGAM-RISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPA 507 (675)
T ss_dssp HHHHHHTTCTTCEEEEEEEGGGHHHHHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCC
T ss_pred HHHHHHhcCCCCEEEEEEHHHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEECC
Confidence 999999999 9999999999999999997 5689999999999977766 68999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEcCCCCCccccCCCCCCCC-CccccceeEeee---C--CcEEEEEechhHHHHHHHHH
Q 003948 599 DEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGT-PLEIGKGRILME---G--DRVAILGYGSIVQQCVLAAN 672 (784)
Q Consensus 599 d~~E~~~~l~~A~~~~~~Pv~irl~r~~~~~~~~p~~~~~~-~~~igk~~vlre---G--~dvtIva~Gs~v~~aleAae 672 (784)
|++|++.++++|++..++|++||++|++.+. ++. ..+ .+++| ++++++ | .|++||++|++++.|++|++
T Consensus 508 d~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~--~~~--~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~al~Aa~ 582 (675)
T 1itz_A 508 DGNETAGAYKVAVLNRKRPSILALSRQKLPH--LPG--TSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEIAAKAAD 582 (675)
T ss_dssp SHHHHHHHHHHHHHCTTSCEEEEECSSCBCC--CTT--CCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEecCCCCCC--CCC--ccccccccC-CEEEecccCCCCCCEEEEEECHHHHHHHHHHH
Confidence 9999999999999865899999999987543 222 122 36677 688998 7 89999999999999999999
Q ss_pred HHhcCCCcEEEeeccccCCCcHH---HHHHHhccC-CeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccc
Q 003948 673 MLKSQDISVTVADARFCKPLDTD---LIRQLANEH-EILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYI 748 (784)
Q Consensus 673 ~L~~~GI~v~VId~~slkPlD~e---~i~~~~~~~-~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~ 748 (784)
+|+++||+++|||++|++|||++ ++.++++++ +++|++|++..+||++. +. .+.+++|+ |.|+
T Consensus 583 ~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~----~~--------~~~~~ig~-d~fg 649 (675)
T 1itz_A 583 ELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKY----VG--------AQGKAIGI-DKFG 649 (675)
T ss_dssp HHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHH----HC--------SSCEEECC-CSCC
T ss_pred HHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCccccHHHh----cC--------CCceEEEe-CCCC
Confidence 99999999999999999999987 477777775 78999999988899853 31 23468999 9999
Q ss_pred cCCCHHHHHHHcCCCHHHHHHHHHH
Q 003948 749 DHGSPADQLEESGLSSRHISATVLS 773 (784)
Q Consensus 749 ~~g~~~elle~~gl~~~~I~~~i~~ 773 (784)
.+|+++++++++|+|+++|+++|++
T Consensus 650 ~sg~~~~l~~~~gl~~~~I~~~i~~ 674 (675)
T 1itz_A 650 ASAPAGTIYKEYGITVESIIAAAKS 674 (675)
T ss_dssp CSSCHHHHHHHHTCSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 9999999999999999999999865
No 9
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=8.1e-97 Score=872.53 Aligned_cols=541 Identities=22% Similarity=0.321 Sum_probs=443.2
Q ss_pred HHHHHHHHHHHHHHHhhc-cCCCCCCCCcHHHHHHHHhh---ccCC------CCcEEEeCCCchH---HHHHHHhCch--
Q 003948 160 LEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFNT------PDDKIIWDVGHQA---YVHKILTGRR-- 224 (784)
Q Consensus 160 L~~la~~iR~~ii~~v~~-~gGH~gsslg~~el~vaL~~---~~~~------p~D~~i~s~GH~~---y~~~~l~G~~-- 224 (784)
.+++|++||.++++|+++ ++||+|++||++||+++||. .||. +|||||||+||++ |++++|+|++
T Consensus 45 ~~~~a~~iR~~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~ 124 (711)
T 3uk1_A 45 TTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLP 124 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCCC
Confidence 466999999999999985 89999999999999999964 4542 4899999999999 9999999993
Q ss_pred -HHhHHHHhcCCC-CCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCC----------CCeEEEEEcCCcccchhh
Q 003948 225 -SRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTAGQA 292 (784)
Q Consensus 225 -~~l~~~r~~ggl-~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~----------~~~Vv~viGDGal~eG~~ 292 (784)
++|++|||.|++ +|||++...++..+++|++|+++|+|+|||+|.++++. +++|||++|||++++|++
T Consensus 125 ~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~ 204 (711)
T 3uk1_A 125 IEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGIS 204 (711)
T ss_dssp HHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccH
Confidence 889999999985 79999877889999999999999999999999998764 789999999999999999
Q ss_pred HHHHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHH
Q 003948 293 YEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (784)
Q Consensus 293 ~EAln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~ 371 (784)
||||++|+++++ |+|+|+|||++ ++.+.+ ... ..+++.
T Consensus 205 ~Eal~~A~~~~L~~livI~dnN~~-~i~~~~--------~~~-----------------------------~~~d~~--- 243 (711)
T 3uk1_A 205 HEACSLAGTLKLNKLIALYDDNGI-SIDGDV--------VNW-----------------------------FHDDTP--- 243 (711)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSE-ETTEEG--------GGT-----------------------------CCCCHH---
T ss_pred HHHHHHHHHhCCCcEEEEEECCCc-ccccch--------hhh-----------------------------cCCCHH---
Confidence 999999999996 59999999996 321111 000 002333
Q ss_pred HHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc---
Q 003948 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV--- 448 (784)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~--- 448 (784)
.+|++|||+++.+|||||+++|.++++++++ .++|++|+++|+||+|++++|+ +.+|||.+
T Consensus 244 -------------~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~kG~G~~~~e~-~~~~Hg~~l~~ 307 (711)
T 3uk1_A 244 -------------KRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRIGNGAATKAG-GHDVHGAPLGA 307 (711)
T ss_dssp -------------HHHHHTTCEEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC---------------------CH
T ss_pred -------------HHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEccccccCCCCCCC-cccccCCCCCH
Confidence 3499999999877999999999999999987 5899999999999999987664 46899874
Q ss_pred ---------------cccccc-----------ccc------------------------------cCC------------
Q 003948 449 ---------------KFDPKT-----------GKQ------------------------------FKT------------ 460 (784)
Q Consensus 449 ---------------~fd~~~-----------g~~------------------------------~~~------------ 460 (784)
+|+..+ |+. ++.
T Consensus 308 e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~~ 387 (711)
T 3uk1_A 308 DEIAKTREALGWTWAPFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAG 387 (711)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhhChhhHHHHHHhhccCCCchHHHHhhHhhhh
Confidence 465432 210 000
Q ss_pred ---CCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh-----hhhHHh---CC---CCeeeccccHHHHHHHHHHH
Q 003948 461 ---KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKR---FP---DRCFDVGIAEQHAVTFAAGL 526 (784)
Q Consensus 461 ---~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl-----~~f~~~---~p---~R~~d~GIaE~~~vg~AaGl 526 (784)
..+..+++++++++|.++++++|+++++++|++++++. ..|+++ || +||||+||+|++|+++|+||
T Consensus 388 ~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaGl 467 (711)
T 3uk1_A 388 ANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGL 467 (711)
T ss_dssp HHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHHH
T ss_pred hhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHHH
Confidence 01234678889999999999999999999999866543 478888 99 99999999999999999999
Q ss_pred Hhc-CCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHH
Q 003948 527 ASE-GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELM 604 (784)
Q Consensus 527 A~~-G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~ 604 (784)
|++ |++||+++|++|++|+++|| +++|++++||++++++.|+ +|+||+|||+++|+++||+||||+|++|+|++|++
T Consensus 468 A~~~G~~Pv~~~f~~F~~~~~~~i-r~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~~ 546 (711)
T 3uk1_A 468 VLHGGYKPFGGTFLTFSDYSRNAL-RVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETA 546 (711)
T ss_dssp HHHSSCEEEEEEEGGGHHHHHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred HHcCCCEEEEEEhHHHHHHHHHHH-HHhhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHHH
Confidence 995 99999999999999999998 5689999999999987776 79999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEcCCCCCccccCCCCCC-CCCccccceeEeee--C----CcEEEEEechhHHHHHHHHHHHhcC
Q 003948 605 HMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNK-GTPLEIGKGRILME--G----DRVAILGYGSIVQQCVLAANMLKSQ 677 (784)
Q Consensus 605 ~~l~~A~~~~~~Pv~irl~r~~~~~~~~p~~~~-~~~~~igk~~vlre--G----~dvtIva~Gs~v~~aleAae~L~~~ 677 (784)
.+|++|++ .++|++||++|++++. ++.... .+.++.|+ +++++ | +|++||++|++++.|++|+++|+++
T Consensus 547 ~~l~~Ai~-~~~Pv~ir~~r~~~p~--~~~~~~~~~~i~~G~-~vl~~~~G~~~~~dvtiia~G~~v~~al~Aa~~L~~~ 622 (711)
T 3uk1_A 547 VAWTYAVA-HQHPSCLIFSRQNLAF--NARTDAQLANVEKGG-YVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQ 622 (711)
T ss_dssp HHHHHHHH-SSSCEEEECCSSEECC--CCCCHHHHHHGGGSS-EEEECCCSSCCSEEEEEEECTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-cCCCEEEEeeCCCCCC--CCCccccccccCCCe-EEEEecCCCCCCCCEEEEEecHHHHHHHHHHHHHHHc
Confidence 99999998 7899999999987542 111000 02445565 67775 7 7999999999999999999999999
Q ss_pred CCcEEEeeccccCCCcHHH---HHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHH
Q 003948 678 DISVTVADARFCKPLDTDL---IRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPA 754 (784)
Q Consensus 678 GI~v~VId~~slkPlD~e~---i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~ 754 (784)
||+++|||++|++|||++. +.++++....+|++|++..+||++.+ .. +.+++|+ |+|+.+|+.+
T Consensus 623 GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~~g~~~~~----g~--------~~~~iGi-d~Fg~sg~~~ 689 (711)
T 3uk1_A 623 GIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVTDFWRKYV----GL--------EGGVVGI-DTFGESAPAG 689 (711)
T ss_dssp TEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCSGGGHHHH----TT--------TSEEECC-CSCCCSSCHH
T ss_pred CCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCccccHHHHh----CC--------CceEEEe-CCCcCcCCHH
Confidence 9999999999999999875 34445555569999999888887544 21 2357898 9999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHh
Q 003948 755 DQLEESGLSSRHISATVLSLL 775 (784)
Q Consensus 755 elle~~gl~~~~I~~~i~~ll 775 (784)
+|+++||||+++|++++++++
T Consensus 690 ~L~~~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 690 VLFKHFGFTVEHVIETAKAVL 710 (711)
T ss_dssp HHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHh
Confidence 999999999999999999876
No 10
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=1.5e-94 Score=854.79 Aligned_cols=544 Identities=21% Similarity=0.308 Sum_probs=464.9
Q ss_pred HHHHHHHHHHHHHHHhhc-cCCCCCCCCcHHHHHHHHhh---ccCC------CCcEEEeCCCchH---HHHHHHhCc---
Q 003948 160 LEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFNT------PDDKIIWDVGHQA---YVHKILTGR--- 223 (784)
Q Consensus 160 L~~la~~iR~~ii~~v~~-~gGH~gsslg~~el~vaL~~---~~~~------p~D~~i~s~GH~~---y~~~~l~G~--- 223 (784)
|+++|++||.++++|+++ ++||+|++||++|++++||+ .||. ++||||||+||++ |+|++|+|+
T Consensus 4 ~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~ 83 (669)
T 2r8o_A 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 778999999999999985 89999999999999999994 3442 4899999999999 999999999
Q ss_pred hHHhHHHHhcCCC-CCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhC----------CCCeEEEEEcCCcccchhh
Q 003948 224 RSRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQA 292 (784)
Q Consensus 224 ~~~l~~~r~~ggl-~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g----------~~~~Vv~viGDGal~eG~~ 292 (784)
.++|.+|||.|++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++
T Consensus 84 ~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~ 163 (669)
T 2r8o_A 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (669)
T ss_dssp HHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHH
Confidence 8999999999996 8999988899999999999999999999999999775 4889999999999999999
Q ss_pred HHHHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHH
Q 003948 293 YEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (784)
Q Consensus 293 ~EAln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~ 371 (784)
|||+++|+.+++ |+++|+|||++ ++.+.+.. .+ .+++..
T Consensus 164 ~Eal~~A~~~~L~~li~i~~nN~~-~i~~~~~~-------~~------------------------------~~d~~~-- 203 (669)
T 2r8o_A 164 HEVCSLAGTLKLGKLIAFYDDNGI-SIDGHVEG-------WF------------------------------TDDTAM-- 203 (669)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSE-ETTEEGGG-------TC------------------------------CCCHHH--
T ss_pred HHHHHHHHHcCCCcEEEEEECCCc-Eecccccc-------cc------------------------------CccHHH--
Confidence 999999999995 59999999996 32111100 00 023333
Q ss_pred HHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCcc----
Q 003948 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGV---- 447 (784)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~---- 447 (784)
+|++|||+++++|||||+++|.++++++++. .++|++|+++|.||+|++++++. .+||+.
T Consensus 204 --------------~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~~~-~~~H~~~~~~ 267 (669)
T 2r8o_A 204 --------------RFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAGT-HDSHGAPLGD 267 (669)
T ss_dssp --------------HHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTTS-GGGTSSCCCH
T ss_pred --------------HHHHCCCeEEeEECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeEeccCcCCcCCC-CcccCCCCCH
Confidence 4999999998789999999999999999863 47999999999999999986654 678986
Q ss_pred --------------cccccccc-----------c------------------------------ccC-------------
Q 003948 448 --------------VKFDPKTG-----------K------------------------------QFK------------- 459 (784)
Q Consensus 448 --------------~~fd~~~g-----------~------------------------------~~~------------- 459 (784)
.+|++.++ + .+.
T Consensus 268 ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~ 347 (669)
T 2r8o_A 268 AEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAK 347 (669)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHhcccCChhhhhhhHHHhhh
Confidence 34554321 0 000
Q ss_pred --CCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh-----hhhHHhCCCCeeeccccHHHHHHHHHHHHhc-CC
Q 003948 460 --TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GV 531 (784)
Q Consensus 460 --~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl-----~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~-G~ 531 (784)
...+..+++++++++|.++++.+|+++++++|+++++++ ..|+++||+||||+||+|++|+++|+|||++ |+
T Consensus 348 ~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG~ 427 (669)
T 2r8o_A 348 LQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGF 427 (669)
T ss_dssp HHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSSC
T ss_pred hcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCCC
Confidence 112345788999999999999999999999999866654 4799999999999999999999999999999 89
Q ss_pred eeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHH
Q 003948 532 KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (784)
Q Consensus 532 ~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A 610 (784)
+||+++|++|+.++++||+ ++|++++||++++++.|+ +|+||+|||+++|++++|++||++|++|+|++|++.++++|
T Consensus 428 ~P~~~tf~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~a 506 (669)
T 2r8o_A 428 LPYTSTFLMFVEYARNAVR-MAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYG 506 (669)
T ss_dssp EEEEEEEGGGGGTTHHHHH-HHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHH
Confidence 9999999999999999984 589999999999987776 68999999999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEcCCCCCccccCCCCCCC-CCccccceeEeee--C-CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeec
Q 003948 611 AVIDDRPSCFRFPRGNGIGAVLPPNNKG-TPLEIGKGRILME--G-DRVAILGYGSIVQQCVLAANMLKSQDISVTVADA 686 (784)
Q Consensus 611 ~~~~~~Pv~irl~r~~~~~~~~p~~~~~-~~~~igk~~vlre--G-~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~ 686 (784)
++..++|++||++|++.+. ++..... ..+++| ++++++ | +|++||++|+++++|++|+++|+++||+++|||+
T Consensus 507 ~~~~~~Pv~i~~~r~~~~~--~~~~~~~~~~~~~G-~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~ 583 (669)
T 2r8o_A 507 VERQDGPTALILSRQNLAQ--QERTEEQLANIARG-GYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSM 583 (669)
T ss_dssp HHCSSSCEEEECCSSEECC--CCCCHHHHHHGGGS-CEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHhCCCcEEEEeCCCCCCC--CCCccchhhhccCC-CEEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 9865899999999986432 2221000 125566 488998 7 8999999999999999999999999999999999
Q ss_pred cccCCCcHH---HHHHHhccC-CeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCC
Q 003948 687 RFCKPLDTD---LIRQLANEH-EILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL 762 (784)
Q Consensus 687 ~slkPlD~e---~i~~~~~~~-~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl 762 (784)
+|++|||++ ++.++++++ +++|++|++..+||++ ++.+++ +++|+ |+|+.+|+++++++++||
T Consensus 584 ~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~g~~~----~~~~~~--------~~ig~-d~fg~sg~~~~l~~~~Gl 650 (669)
T 2r8o_A 584 PSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYK----YVGLNG--------AIVGM-TTFGESAPAELLFEEFGF 650 (669)
T ss_dssp SCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEGGGGHH----HHTTSS--------EEEEE-CSCCCSSCHHHHHHHTTC
T ss_pred ccCCccccchHHHHHHhccccCceEEEEeCCchhhHHH----HhcCCC--------eEEEc-CCCCCcCCHHHHHHHhCC
Confidence 999999987 577777774 7899999998888984 444332 46888 799999999999999999
Q ss_pred CHHHHHHHHHHHhc
Q 003948 763 SSRHISATVLSLLG 776 (784)
Q Consensus 763 ~~~~I~~~i~~ll~ 776 (784)
|+++|+++|++++.
T Consensus 651 ~~~~I~~~~~~~~~ 664 (669)
T 2r8o_A 651 TVDNVVAKAKELLH 664 (669)
T ss_dssp SHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999875
No 11
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-94 Score=852.24 Aligned_cols=535 Identities=21% Similarity=0.308 Sum_probs=461.5
Q ss_pred HHHHHHHHHHHHHhhc-cCCCCCCCCcHHHHHHHHhh---ccC------CCCcEEEeCCCchH---HHHHHHhCc---hH
Q 003948 162 QLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFN------TPDDKIIWDVGHQA---YVHKILTGR---RS 225 (784)
Q Consensus 162 ~la~~iR~~ii~~v~~-~gGH~gsslg~~el~vaL~~---~~~------~p~D~~i~s~GH~~---y~~~~l~G~---~~ 225 (784)
++|++||.++++|+++ ++||+|++||++|++++||+ .|| .+|||||||+||++ |+|++|+|+ ++
T Consensus 10 ~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~~ 89 (651)
T 2e6k_A 10 LSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYDLPLE 89 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCSCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCCCCHH
Confidence 4799999999999986 99999999999999999984 454 25899999999999 999999999 78
Q ss_pred HhHHHHhcCCC-CCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhC----------CCCeEEEEEcCCcccchhhHH
Q 003948 226 RMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQAYE 294 (784)
Q Consensus 226 ~l~~~r~~ggl-~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g----------~~~~Vv~viGDGal~eG~~~E 294 (784)
+|.+|||.+++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++||
T Consensus 90 ~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~E 169 (651)
T 2e6k_A 90 ELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGE 169 (651)
T ss_dssp HHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHH
T ss_pred HHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHH
Confidence 99999999996 8999998899999999999999999999999999876 689999999999999999999
Q ss_pred HHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHH
Q 003948 295 AMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDE 373 (784)
Q Consensus 295 Aln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~ 373 (784)
|+++|+++++ |+++|+|||++ ++.+.+.. .+ .+++.
T Consensus 170 al~~A~~~~L~~li~i~~nN~~-~i~~~~~~-------~~------------------------------~~d~~----- 206 (651)
T 2e6k_A 170 AASLAGHWGLSKLIVFWDDNRI-SIDGPTDL-------AF------------------------------TEDVL----- 206 (651)
T ss_dssp HHHHHHHTTCTTEEEEEEECCE-ETTEEGGG-------TC------------------------------CSCHH-----
T ss_pred HHHHHHHcCCCeEEEEEECCCc-cccccccc-------cc------------------------------CccHH-----
Confidence 9999999995 59999999996 32111100 00 01233
Q ss_pred HhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc-----
Q 003948 374 YARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV----- 448 (784)
Q Consensus 374 ~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~----- 448 (784)
.+|++|||+++++|||||+++|.++++++++ .++|++||++|.||+|++ .+ ++.+||+.+
T Consensus 207 -----------~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~kg~G~~-~~-~~~~~H~~~~~~~e 271 (651)
T 2e6k_A 207 -----------ARYRAYGWQTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHIGFGSP-KQ-DSAKAHGEPLGPEA 271 (651)
T ss_dssp -----------HHHHHTTCEEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCTTTTST-TT-TSGGGTSSCCHHHH
T ss_pred -----------HHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEeccccc-cc-ccccccccCCCHHH
Confidence 3499999999878999999999999999987 589999999999999999 44 457899875
Q ss_pred -------------ccccccccc-----------------------------c--------CCC-----------CchhhH
Q 003948 449 -------------KFDPKTGKQ-----------------------------F--------KTK-----------SPTLTY 467 (784)
Q Consensus 449 -------------~fd~~~g~~-----------------------------~--------~~~-----------~~~~s~ 467 (784)
+|+..++.. + ..+ .+..++
T Consensus 272 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 351 (651)
T 2e6k_A 272 VEATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEEPPSFDKPIAT 351 (651)
T ss_dssp HHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSCCCCCSCBCH
T ss_pred HHHHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcCCchhhhccccCccHHH
Confidence 565533210 0 001 114678
Q ss_pred HHHHHHHHHHHHhhCCCEEEEecCCCCCCCh-----hhhHH-hCCCCeeeccccHHHHHHHHHHHHhcC-CeeEEEecHh
Q 003948 468 TQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQK-RFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIYSS 540 (784)
Q Consensus 468 ~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl-----~~f~~-~~p~R~~d~GIaE~~~vg~AaGlA~~G-~~P~~~tys~ 540 (784)
+++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|+++|+|||++| ++||++||+.
T Consensus 352 r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~~~ 431 (651)
T 2e6k_A 352 RAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGYRAYGGTFLV 431 (651)
T ss_dssp HHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCCEEEEEeHHH
Confidence 9999999999999999999999999877654 46887 999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeE
Q 003948 541 FLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSC 619 (784)
Q Consensus 541 Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~ 619 (784)
|+.++++|| +++|++++||++++++.|+ +|+||+|||+++|++++|++||++|++|+|++|++.++++|++..++|++
T Consensus 432 F~~~~~~ai-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~Pv~ 510 (651)
T 2e6k_A 432 FSDYMRPAI-RLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGPTA 510 (651)
T ss_dssp GGGGSHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcCCCCEE
Confidence 988888886 6799999999999877776 78999999999999999999999999999999999999999986589999
Q ss_pred EEcCCCCCccccCCCCCCCCCccccceeEeeeC--CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHH--
Q 003948 620 FRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEG--DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTD-- 695 (784)
Q Consensus 620 irl~r~~~~~~~~p~~~~~~~~~igk~~vlreG--~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e-- 695 (784)
||++|++.+. ++.. ....++.| ++++++| .|++||++|++++.|++|+++|+++||+++|||++|++|||++
T Consensus 511 i~~~r~~~~~--~~~~-~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~~~ 586 (651)
T 2e6k_A 511 LVLTRQAVPL--LSPE-KARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPE 586 (651)
T ss_dssp EECCSSCBCC--CCHH-HHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCH
T ss_pred EEEeCCCCCC--CCcc-hhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEecCcCCccccccH
Confidence 9999987532 1210 00134556 5889988 8999999999999999999999999999999999999999998
Q ss_pred -HHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 003948 696 -LIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSL 774 (784)
Q Consensus 696 -~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~l 774 (784)
++.+++++++++|++|++..+||++++ + +++|+ |.|+++|+++++++++|+|+++|+++|+++
T Consensus 587 ~~~~~v~~~~~~vv~vE~~~~~G~~~~v--------------~-~~ig~-d~f~~sg~~~~l~~~~gl~~~~I~~~i~~~ 650 (651)
T 2e6k_A 587 AYRKEVLPPGLPVVAVEAGASLGWERYA--------------H-KVVAL-DRFGASAPYPEVYERLGFTPERVAEAFLSL 650 (651)
T ss_dssp HHHHHHSCTTSCEEEECSSCCTTGGGTC--------------S-EEECC-CSCCCSCCTTHHHHHTTCCHHHHHHHHHTT
T ss_pred HHHHHHhCcCCeEEEEeCCccCchHHhC--------------C-CEEEe-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 477778877889999999888887443 2 67899 999999999999999999999999999876
Q ss_pred h
Q 003948 775 L 775 (784)
Q Consensus 775 l 775 (784)
+
T Consensus 651 l 651 (651)
T 2e6k_A 651 V 651 (651)
T ss_dssp C
T ss_pred C
Confidence 3
No 12
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=1.6e-93 Score=846.79 Aligned_cols=538 Identities=22% Similarity=0.313 Sum_probs=461.3
Q ss_pred HHHH-HHHHHHHHHHHHhhc-cCCCCCCCCcHHHHHHHHhh--ccCC------CCcEEEeCCCchH---HHHHHHhCc--
Q 003948 159 DLEQ-LAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR--VFNT------PDDKIIWDVGHQA---YVHKILTGR-- 223 (784)
Q Consensus 159 ~L~~-la~~iR~~ii~~v~~-~gGH~gsslg~~el~vaL~~--~~~~------p~D~~i~s~GH~~---y~~~~l~G~-- 223 (784)
+|++ +|++||.++++++++ ++||+|++||++|++++||+ .||. ++||||||+||++ |+|++|+|+
T Consensus 6 ~l~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~ 85 (680)
T 1gpu_A 6 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 85 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCC
Confidence 6888 999999999999986 89999999999999999997 6653 4899999999999 999999999
Q ss_pred -hHHhHHHHhcCCC-CCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhC----------CCCeEEEEEcCCcccchh
Q 003948 224 -RSRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQ 291 (784)
Q Consensus 224 -~~~l~~~r~~ggl-~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g----------~~~~Vv~viGDGal~eG~ 291 (784)
.++|.+|||.||+ +|||++ +++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||+++||+
T Consensus 86 ~~~~l~~~r~~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~ 164 (680)
T 1gpu_A 86 SIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGI 164 (680)
T ss_dssp CHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhcccCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhh
Confidence 7899999999996 999999 899999999999999999999999999875 488999999999999999
Q ss_pred hHHHHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHH
Q 003948 292 AYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (784)
Q Consensus 292 ~~EAln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k 370 (784)
+|||+|+|+.+++ |+++|+|||++ ++.+.+.. .+ .+++..
T Consensus 165 ~~Eal~~A~~~~L~~li~i~~nN~~-~i~~~~~~-------~~------------------------------~~d~~~- 205 (680)
T 1gpu_A 165 SSEASSLAGHLKLGNLIAIYDDNKI-TIDGATSI-------SF------------------------------DEDVAK- 205 (680)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSE-ETTEEGGG-------TC------------------------------CCCHHH-
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCc-eEeccccc-------cc------------------------------CccHHH-
Confidence 9999999999995 59999999995 32111100 00 023333
Q ss_pred HHHHhhhccCCCchhhhhhcCCeEEeecCCC-CHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc-
Q 003948 371 VDEYARGLISASGSTFFEELGLYYIGPVDGH-NVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV- 448 (784)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~i~~vDGh-d~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~- 448 (784)
+|++|||+++++|||| |+++|.++++++++. .++|++||++|.||+|++ .+ +..++|+..
T Consensus 206 ---------------~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~-~~-~~~~~H~~~~ 267 (680)
T 1gpu_A 206 ---------------RYEAYGWEVLYVENGNEDLAGIAKAIAQAKLS-KDKPTLIKMTTTIGYGSL-HA-GSHSVHGAPL 267 (680)
T ss_dssp ---------------HHHHHTCEEEEESCTTTCHHHHHHHHHHHHHC-TTSCEEEEEECCTTTTST-TT-TSGGGSSSCC
T ss_pred ---------------HHHhcCCeEEEEecCCCCHHHHHHHHHHHHHC-CCCCEEEEEEeecccccc-cC-CCCccCCCCC
Confidence 4999999998789999 999999999999863 479999999999999999 44 346789875
Q ss_pred ------------------cccccccc-------------c------------------------------cC--------
Q 003948 449 ------------------KFDPKTGK-------------Q------------------------------FK-------- 459 (784)
Q Consensus 449 ------------------~fd~~~g~-------------~------------------------------~~-------- 459 (784)
+|++.++. . ++
T Consensus 268 ~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~ 347 (680)
T 1gpu_A 268 KADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLP 347 (680)
T ss_dssp CHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTGGGGSC
T ss_pred CHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCCchhhhhch
Confidence 46543210 0 00
Q ss_pred ---CCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh-----hhhHH------hCCCCeeeccccHHHHHHHHHH
Q 003948 460 ---TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQK------RFPDRCFDVGIAEQHAVTFAAG 525 (784)
Q Consensus 460 ---~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl-----~~f~~------~~p~R~~d~GIaE~~~vg~AaG 525 (784)
...+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|+++|+|
T Consensus 348 ~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~G 427 (680)
T 1gpu_A 348 TYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNG 427 (680)
T ss_dssp CCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHH
T ss_pred hhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHHH
Confidence 012346789999999999999999999999999876543 46888 9999999999999999999999
Q ss_pred HHhcC-Ce-eEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHH
Q 003948 526 LASEG-VK-PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAE 602 (784)
Q Consensus 526 lA~~G-~~-P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E 602 (784)
||++| ++ ||+++|++|+.++++|| +++|++++||++++++.|+ +|+||+|||+.+|+++||++||++|++|+|++|
T Consensus 428 lA~~Gg~~~P~~~~f~~F~~~~~~ai-r~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e 506 (680)
T 1gpu_A 428 ISAFGANYKPYGGTFLNFVSYAAGAV-RLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNE 506 (680)
T ss_dssp HHHHCTTCEEEEEEEHHHHGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHHH
T ss_pred HHhcCCCceEEEeehHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEecCCHHH
Confidence 99998 99 99999999999999997 5699999999999977776 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEcCCCCCccccCCCCCCCCC-ccccceeEeeeC--CcEEEEEechhHHHHHHHHHHHhcCCC
Q 003948 603 LMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTP-LEIGKGRILMEG--DRVAILGYGSIVQQCVLAANMLKSQDI 679 (784)
Q Consensus 603 ~~~~l~~A~~~~~~Pv~irl~r~~~~~~~~p~~~~~~~-~~igk~~vlreG--~dvtIva~Gs~v~~aleAae~L~~~GI 679 (784)
++.++++|++..++|++||++|++.+. ++. ..+. +++| ++++++| .|++||++|++++.|++|+++|+++||
T Consensus 507 ~~~~l~~A~~~~~~Pv~i~~~r~~~~~--~~~--~~~~~~~~G-~~vl~~g~~~dvtiva~G~~v~~al~Aa~~L~~~Gi 581 (680)
T 1gpu_A 507 VSAAYKNSLESKHTPSIIALSRQNLPQ--LEG--SSIESASKG-GYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNI 581 (680)
T ss_dssp HHHHHHHHHHCSSCCEEEECCSSCBCC--CTT--CCHHHHTTS-CEEEECCSSCSEEEEECTHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCC--CCC--cchhhccCC-CEEEecCCCCCEEEEEEcHHHHHHHHHHHHHHhcCC
Confidence 999999999855899999999987543 222 1223 5666 5899998 899999999999999999999999999
Q ss_pred cEEEeeccccCCCcHH---HHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHH
Q 003948 680 SVTVADARFCKPLDTD---LIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQ 756 (784)
Q Consensus 680 ~v~VId~~slkPlD~e---~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~el 756 (784)
+++|||++|++|||++ .+.++++++.++|+||++..+||+++| + .. +++ |.|+.+|+.+++
T Consensus 582 ~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~v~vE~~~~~g~~~~v-------~-------~~-~gv-~~f~~~g~~~~l 645 (680)
T 1gpu_A 582 KARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLATTCWGKYA-------H-------QS-FGI-DRFGASGKAPEV 645 (680)
T ss_dssp CEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCSTTGGGTC-------S-------EE-ECC-CSCCCCSCHHHH
T ss_pred CEEEEEcCCCCcchhhhHHHHHHHhccCCceEEEeCCccccHHHhc-------C-------cc-eee-CcCCCCCCHHHH
Confidence 9999999999999988 566666664234999999888887443 1 12 677 899999999999
Q ss_pred HHHcCCCHHHHHHHHHHHhc
Q 003948 757 LEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 757 le~~gl~~~~I~~~i~~ll~ 776 (784)
++++|+|+++|+++|+++++
T Consensus 646 ~~~~gl~~~~I~~~i~~~l~ 665 (680)
T 1gpu_A 646 FKFFGFTPEGVAERAQKTIA 665 (680)
T ss_dssp HHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999874
No 13
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=9.3e-93 Score=852.70 Aligned_cols=617 Identities=18% Similarity=0.224 Sum_probs=481.6
Q ss_pred CCCCccCCCCcccccCCCHHHHH-HHHHHHHHHHHHHhhc-c------CCCCCCCCcHHHHHHHHhhc-cCC-----CCc
Q 003948 139 PTPLLDTINYPIHMKNLSTEDLE-QLAAELRADIVNSVSK-T------GGHLSANLGVVELTLALHRV-FNT-----PDD 204 (784)
Q Consensus 139 ~~~~l~~i~~p~~~k~~~~~~L~-~la~~iR~~ii~~v~~-~------gGH~gsslg~~el~vaL~~~-~~~-----p~D 204 (784)
.||||+||+.|.+.+.....+|+ ++|++||+++++||++ + |||+|+++|++||+++||+. |+. |+|
T Consensus 56 ~~~~l~~i~~~~~~~~p~d~~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D 135 (886)
T 2qtc_A 56 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 135 (886)
T ss_dssp CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred CCchhhhCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 68999999999999888888999 8999999999999986 6 89999999999999999865 665 689
Q ss_pred EEEeCCCchH---HHHHHHhCch--HHhHHHHh---cCCCCCCCCCCCCcc-cccCCcccchhHHHHHHHHHHHHH----
Q 003948 205 KIIWDVGHQA---YVHKILTGRR--SRMNTMRK---TSGLAGFPKREESVH-DAFGAGHSSTSISAGLGMAVARDI---- 271 (784)
Q Consensus 205 ~~i~s~GH~~---y~~~~l~G~~--~~l~~~r~---~ggl~g~~~~~e~~~-~~~g~G~~G~~ls~AvG~AlA~~~---- 271 (784)
||||+||++ |+|++|+||. ++|.+||| .+|++|||++.++|+ +.|++||+|+|+++|+|+|+|+|+
T Consensus 136 -~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~ 214 (886)
T 2qtc_A 136 -LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHR 214 (886)
T ss_dssp -EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHT
T ss_pred -EEEEcchhHHHHHHHHHHhCCCCHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhccc
Confidence 999999999 9999999995 89999999 568999999999998 999999999999999999999998
Q ss_pred ---hCCCCeEEEEEcCCcccchhhHHHHHHHhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHH
Q 003948 272 ---LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFR 347 (784)
Q Consensus 272 ---~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~ 347 (784)
++.+++|||++|||+|+||++|||||+|+.++ .|||||||||+| ++ +|++.....+.+.|+++..+..|.
T Consensus 215 ~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~-si-----~~~v~~~~~~~~~l~~~~~~~G~~ 288 (886)
T 2qtc_A 215 GLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQ-RL-----DGPVTGNGKIINELEGIFEGAGWN 288 (886)
T ss_dssp TSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSB-CS-----SSBSCTTSCHHHHHHHHHHHTTCE
T ss_pred ccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCc-cc-----CCCccccccccHHHHHHHHhCCCC
Confidence 77899999999999999999999999999999 689999999997 44 344333223556666554332222
Q ss_pred HHHHH----HHHhhhhc-CCchHHHHHHHH------------HHhhhccC-CCc--hhhhhhc---CCeEEeecCCCCHH
Q 003948 348 KLREA----AKSITKQI-GGQTHEVAAKVD------------EYARGLIS-ASG--STFFEEL---GLYYIGPVDGHNVE 404 (784)
Q Consensus 348 ~lr~~----~~~~~~~~-g~~~~~~~~k~~------------~~~r~~~~-~~~--~~lfea~---G~~~i~~vDGhd~~ 404 (784)
.++.. .+.++++. |..+.....++. .|.|+.+- .++ ..+.+.+ |++|+ ++||||++
T Consensus 289 ~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l-~~dGhD~~ 367 (886)
T 2qtc_A 289 VIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWAL-NRGGHDPK 367 (886)
T ss_dssp EEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTC-CBGGGCHH
T ss_pred EEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhc-ccCCCCHH
Confidence 11100 00111111 111111111111 13333221 111 1222223 88888 99999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc--------------------------cccccccc--
Q 003948 405 DLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV--------------------------KFDPKTGK-- 456 (784)
Q Consensus 405 ~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~--------------------------~fd~~~g~-- 456 (784)
+|.++++++++. .++|++||++|+||+|+++++.+..++|++. +|+..+..
T Consensus 368 ~l~~a~~~A~~~-~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f~~~~~~~~ 446 (886)
T 2qtc_A 368 KIYAAFKKAQET-KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSE 446 (886)
T ss_dssp HHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSH
T ss_pred HHHHHHHHHHHc-CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHHHcCCCCChhhhccccccCCccchH
Confidence 999999999975 4699999999999999987766667899874 45543310
Q ss_pred --------------ccC------------C-----------CCchhhHHHHHHHHHHHHHhhC---CCEEEEecCCC---
Q 003948 457 --------------QFK------------T-----------KSPTLTYTQYFAESLIKEAETD---DKIVAIHAAMG--- 493 (784)
Q Consensus 457 --------------~~~------------~-----------~~~~~s~~~af~~aL~~l~~~d---~~iv~i~aD~g--- 493 (784)
..+ + ..+..+++++|++.|.++++++ ++|+++++|+.
T Consensus 447 ~~~~~~~r~~~l~g~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~ 526 (886)
T 2qtc_A 447 EHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTF 526 (886)
T ss_dssp HHHHHHHHHHHTTSCSSCCCCSCCSCCCCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGG
T ss_pred HHHHHHHHHHHhcccCcchhhhhhhcccCCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCcccccc
Confidence 000 0 1134578999999999999998 99999999944
Q ss_pred CC------CC-----hhhhH-----------HhCCCCeeeccccHHHH-H---HHHHHHHhcC--CeeEEEecHhH-HHH
Q 003948 494 GG------TG-----LNYFQ-----------KRFPDRCFDVGIAEQHA-V---TFAAGLASEG--VKPFCAIYSSF-LQR 544 (784)
Q Consensus 494 gs------~g-----l~~f~-----------~~~p~R~~d~GIaE~~~-v---g~AaGlA~~G--~~P~~~tys~F-l~r 544 (784)
|+ ++ ...|. +.||+||||+||+|++| + ++|+|+|++| ++||+.+|++| +||
T Consensus 527 G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qR 606 (886)
T 2qtc_A 527 GMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQR 606 (886)
T ss_dssp TCHHHHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHH
T ss_pred CcccccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHH
Confidence 22 22 24454 68899999999999995 5 6999999999 89999999999 899
Q ss_pred HHHHHHHHhhcCCCCEEEEeeCCC-CCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCC----eE
Q 003948 545 GYDQVVHDVDLQKLPVRFAMDRAG-LVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRP----SC 619 (784)
Q Consensus 545 a~dQi~~~~a~~~lpV~~v~~~~G-~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~P----v~ 619 (784)
++||+++++++++.++++..+..+ .+|.||+|||+.+|+++++++||++|++|+|++|++.++++|+++.++| ++
T Consensus 607 a~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~ 686 (886)
T 2qtc_A 607 IGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVY 686 (886)
T ss_dssp HHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCE
T ss_pred HHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEE
Confidence 999999999999999999875443 3689999999999999999999999999999999999999999876789 99
Q ss_pred EEcCCCC--CccccCCCCCCCCCccccceeEeeeC----CcEEEEEechhHHHHHHHHHHHhcC-CCcEEEeeccccCCC
Q 003948 620 FRFPRGN--GIGAVLPPNNKGTPLEIGKGRILMEG----DRVAILGYGSIVQQCVLAANMLKSQ-DISVTVADARFCKPL 692 (784)
Q Consensus 620 irl~r~~--~~~~~~p~~~~~~~~~igk~~vlreG----~dvtIva~Gs~v~~aleAae~L~~~-GI~v~VId~~slkPl 692 (784)
||++|++ .....+|+. ....+ +++++++++| +||+||++|+++++|++|+++|+++ ||+++|||++|++||
T Consensus 687 i~~~r~~~~~~~p~~~~~-~~~~~-~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pL 764 (886)
T 2qtc_A 687 YYITTLNENYHMPAMPEG-AEEGI-RKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTEL 764 (886)
T ss_dssp EEEECCSCCBCCCCCCTT-CHHHH-HHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHH
T ss_pred EEEeCCccccCCCCCCcc-hhhhc-cCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCccc
Confidence 9999975 210122321 01223 7889999987 7999999999999999999999998 999999999999999
Q ss_pred cHHH-------------------HHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCH
Q 003948 693 DTDL-------------------IRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 753 (784)
Q Consensus 693 D~e~-------------------i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~ 753 (784)
|++. +.+.+.. ..+|++|++.. |+++.+..++. ..+++++|+ |+|+.+|++
T Consensus 765 D~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~vVa~ed~~~-g~~~~~~~~~~-------~~~~~~lG~-D~Fg~sg~~ 834 (886)
T 2qtc_A 765 ARDGQDCERWNMLHPLETPRVPYIAQVMND-APAVASTDYMK-LFAEQVRTYVP-------ADDYRVLGT-DGFGRSDSR 834 (886)
T ss_dssp HHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SCEEEECSSCT-HHHHTTGGGCC-------SSCEEEECC-CSCCCCCCH
T ss_pred chHHHHHhhhcccCccccccHHHHHHhcCC-CCEEEEEeccc-chHHHHHHHcC-------CCCeEEEEe-CCCCCCCCH
Confidence 9985 4555655 67899998866 56654444331 147888999 999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhc
Q 003948 754 ADQLEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 754 ~elle~~gl~~~~I~~~i~~ll~ 776 (784)
++++++||+|+++|++++++++.
T Consensus 835 ~~L~~~~Gld~e~Iv~~a~~~L~ 857 (886)
T 2qtc_A 835 ENLRHHFEVDASYVVVAALGELA 857 (886)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999885
No 14
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=7e-93 Score=839.94 Aligned_cols=538 Identities=20% Similarity=0.291 Sum_probs=462.4
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCCCCCCCcHHHHHHHHhh---ccC--C----CCcEEEeCCCchH---HHHHHHhCc--
Q 003948 159 DLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFN--T----PDDKIIWDVGHQA---YVHKILTGR-- 223 (784)
Q Consensus 159 ~L~~la~~iR~~ii~~v~~-~gGH~gsslg~~el~vaL~~---~~~--~----p~D~~i~s~GH~~---y~~~~l~G~-- 223 (784)
+|+++|++||.++++|+++ ++||+|++||++|++++||+ .++ + +|||||||+||++ |++++|+|+
T Consensus 5 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~ 84 (673)
T 1r9j_A 5 SIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNL 84 (673)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCC
Confidence 4788999999999999985 99999999999999999986 343 2 3899999999999 999999999
Q ss_pred -hHHhHHHHhcCC-CCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhC----------CCCeEEEEEcCCcccchh
Q 003948 224 -RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQ 291 (784)
Q Consensus 224 -~~~l~~~r~~gg-l~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g----------~~~~Vv~viGDGal~eG~ 291 (784)
.++|.+|||.|+ ++|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||+++||+
T Consensus 85 ~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~ 164 (673)
T 1r9j_A 85 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 164 (673)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccH
Confidence 589999999998 47999998899999999999999999999999999876 689999999999999999
Q ss_pred hHHHHHHHhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHH
Q 003948 292 AYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (784)
Q Consensus 292 ~~EAln~A~~~~~-nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k 370 (784)
+|||+++|+++++ |+|+|+|||++ ++. +++... + .+++..+
T Consensus 165 ~~Eal~~A~~~~L~~li~i~d~N~~-~i~-----~~~~~~--~------------------------------~~d~~~~ 206 (673)
T 1r9j_A 165 CQEALSLAGHLALEKLIVIYDSNYI-SID-----GSTSLS--F------------------------------TEQCHQK 206 (673)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSB-CSS-----SBGGGT--C------------------------------CCCHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCC-ccc-----cchhhc--c------------------------------CHhHHHH
Confidence 9999999999995 69999999995 331 111100 0 0234433
Q ss_pred HHHHhhhccCCCchhhhhhcCCeEEeecCC-CCHHHHHHHHHHhhcCCCCCcEEEEEEecCCCCCChhhhcccccCccc-
Q 003948 371 VDEYARGLISASGSTFFEELGLYYIGPVDG-HNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV- 448 (784)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~i~~vDG-hd~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~Hg~~- 448 (784)
|++|||+++..||| ||+++|.++++++++. .++|++|+++|.||+|++ .|+ ..++|+.+
T Consensus 207 ----------------~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~-~~~P~lI~~~T~kg~G~~-~~~-~~~~H~~~~ 267 (673)
T 1r9j_A 207 ----------------YVAMGFHVIEVKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIGFGSS-KQG-TEKVHGAPL 267 (673)
T ss_dssp ----------------HHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTST-TTT-SGGGTSSCC
T ss_pred ----------------HHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecccccccc-cCC-CcccccCCC
Confidence 99999999878999 9999999999999863 579999999999999998 554 46789863
Q ss_pred ------------------cccccc------------ccc--------c------------------CCC-----------
Q 003948 449 ------------------KFDPKT------------GKQ--------F------------------KTK----------- 461 (784)
Q Consensus 449 ------------------~fd~~~------------g~~--------~------------------~~~----------- 461 (784)
+|+..+ |+. + ...
T Consensus 268 ~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~~~p~~~~~~~p~ 347 (673)
T 1r9j_A 268 GEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPT 347 (673)
T ss_dssp CHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTGGGSCC
T ss_pred CHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcCCCCchhhhhccc
Confidence 233211 100 0 000
Q ss_pred -CchhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCChh--h-----hHH-hCCCCeeeccccHHHHHHHHHHHHhc-CC
Q 003948 462 -SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLN--Y-----FQK-RFPDRCFDVGIAEQHAVTFAAGLASE-GV 531 (784)
Q Consensus 462 -~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl~--~-----f~~-~~p~R~~d~GIaE~~~vg~AaGlA~~-G~ 531 (784)
.+..+++++++++|.++++++|+++++++|+++++++. + |++ +||+||||+||+|++|+++|+|||++ |+
T Consensus 348 ~~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~~~R~id~GIaE~~~~~~a~GlA~~GG~ 427 (673)
T 1r9j_A 348 NSSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDGI 427 (673)
T ss_dssp CCSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSC
T ss_pred cccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCCCCCeEecCccHHHHHHHHHHHHhcCCC
Confidence 12457899999999999999999999999998776553 2 887 99999999999999999999999999 69
Q ss_pred eeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHH
Q 003948 532 KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (784)
Q Consensus 532 ~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~-~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A 610 (784)
+||+++|++|+.++++|| +++|++++||++++++.|+ +|+||+|||+++|++++|++||++|++|+|++|++.++++|
T Consensus 428 ~P~~~~~~~F~~~~~~~i-r~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a 506 (673)
T 1r9j_A 428 IPFGGTFLNFIGYALGAV-RLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVA 506 (673)
T ss_dssp EEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHHH
T ss_pred EEEEEehHHHHHHHHHHH-HHHHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHHH
Confidence 999999999999999997 5689999999999987776 79999999999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEcCCCCCccccCCCCCCCC-CccccceeEeeeC--CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeecc
Q 003948 611 AVIDDRPSCFRFPRGNGIGAVLPPNNKGT-PLEIGKGRILMEG--DRVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687 (784)
Q Consensus 611 ~~~~~~Pv~irl~r~~~~~~~~p~~~~~~-~~~igk~~vlreG--~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~ 687 (784)
++..++|++||++|++.+. ++. ..+ .+++| ++++++| .|++||++|+++++|++|+++|+++ |+++|||++
T Consensus 507 ~~~~~~Pv~i~~~r~~~~~--~~~--~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L~~~-i~~~Vv~~~ 580 (673)
T 1r9j_A 507 LSSIHTPTVLCLSRQNTEP--QSG--SSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMP 580 (673)
T ss_dssp HHCTTCCEEEECCSSEECC--CTT--CCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECS
T ss_pred HHhCCCeEEEEEcCCCCCC--CCC--cccccccCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHHHhc-CCEEEEeCC
Confidence 9866899999999986432 222 122 35677 6899998 8999999999999999999999999 999999999
Q ss_pred ccCCCcHHH---HHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCH
Q 003948 688 FCKPLDTDL---IRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSS 764 (784)
Q Consensus 688 slkPlD~e~---i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~ 764 (784)
|++|||++. +.++++++.++|+||++..+||+++| +++ +|+ |.|+++|+.+++++++|+|+
T Consensus 581 sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~~g~~~~v--------------~~~-~g~-d~f~~sg~~~~L~~~~g~~~ 644 (673)
T 1r9j_A 581 CQELFDAQPDTYRQAVLPAGVPVVSVEAYVSFGWEKYS--------------HAH-VGM-SGFGASAPAGVLYKKFGITV 644 (673)
T ss_dssp CHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------SEE-ESC-SSCCCSSCHHHHHHHTTCSH
T ss_pred CCchhhcccHHHHHHHhccCCeEEEEeCCCccchHHhc--------------Cce-EEe-ccCCCCCCHHHHHHHHCcCH
Confidence 999999984 88899988889999999888887433 133 888 99999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 003948 765 RHISATVLSLLG 776 (784)
Q Consensus 765 ~~I~~~i~~ll~ 776 (784)
++|+++|+++++
T Consensus 645 ~~I~~~i~~~l~ 656 (673)
T 1r9j_A 645 EEVVRTGRELAK 656 (673)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999884
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=3.9e-69 Score=636.67 Aligned_cols=531 Identities=15% Similarity=0.175 Sum_probs=420.3
Q ss_pred cCCCCCCCCcHHHHHHHHhhcc-CCCCcE-EEeCCCchH---HHHHHHhCc-----------hHHhHH-HHhcC---CCC
Q 003948 178 TGGHLSANLGVVELTLALHRVF-NTPDDK-IIWDVGHQA---YVHKILTGR-----------RSRMNT-MRKTS---GLA 237 (784)
Q Consensus 178 ~gGH~gsslg~~el~vaL~~~~-~~p~D~-~i~s~GH~~---y~~~~l~G~-----------~~~l~~-~r~~g---gl~ 237 (784)
.+||+|+++|++++++.+..+. ...+|| ||+|+||.+ |+.++|.|. .++|.+ |||+. |++
T Consensus 81 ~sGH~G~~~g~a~iy~~~~~~~~~~~rDr~fvls~GHg~p~lYa~l~l~G~~~~~~p~~s~d~e~Lk~lfrqfs~~gg~p 160 (845)
T 3ahc_A 81 LVGHWGTTPGLNFLLAHINRLIADHQQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIP 160 (845)
T ss_dssp CCSCCTTHHHHHHHHHHHHHHHHHHTBCBCCEESSGGGHHHHHHHHHHHTHHHHHCTTSCSSHHHHHHHHHHBTCTTSBC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccCCCceEEEECcCcHHHHHHHHHHHcCCCccccccccccHHHHHHHHHhccCCCCCC
Confidence 6899999999999955543332 235899 799999999 889999997 356766 67764 589
Q ss_pred CCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchh---hHHHHHHHhhcC-CCEEEEEECC
Q 003948 238 GFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQ---AYEAMNNAGFLD-ANLIVVLNDN 313 (784)
Q Consensus 238 g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~---~~EAln~A~~~~-~nlivIv~dN 313 (784)
|||.+ +.|+....+|.+|+||+.|+|||+ .+++.+|+|++||||+++|+ .||+.++|..++ +||++|+|+|
T Consensus 161 gHp~~-~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N 235 (845)
T 3ahc_A 161 SHFAP-ETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLN 235 (845)
T ss_dssp SSCCT-TSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEEC
T ss_pred CCCCC-CCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECC
Confidence 99976 689999999999999999999995 45689999999999999999 999999998876 9999999999
Q ss_pred CCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCe
Q 003948 314 KQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY 393 (784)
Q Consensus 314 ~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~ 393 (784)
+. ++ +|++. + +.+ +.+++.+| |++|||+
T Consensus 236 ~~-~i-----~g~t~----l----~~~----------------------~~e~l~~r----------------f~a~Gw~ 263 (845)
T 3ahc_A 236 GY-KI-----ANPTI----L----ARI----------------------SDEELHDF----------------FRGMGYH 263 (845)
T ss_dssp SB-SS-----SSBCH----H----HHS----------------------CHHHHHHH----------------HHHTTEE
T ss_pred CC-cC-----CCCcc----c----ccc----------------------CcHHHHHH----------------HHHCCCE
Confidence 94 22 34331 0 000 12566666 9999999
Q ss_pred EEeecCC-C--CHHHHHHHHH---------------HhhcCCCCCc--EEEEEEecCCC-------CCChhhhcccccCc
Q 003948 394 YIGPVDG-H--NVEDLVTIFQ---------------RVKEMPAPGP--VLIHVVTEKGK-------GYPPAEAAADRMHG 446 (784)
Q Consensus 394 ~i~~vDG-h--d~~~l~~al~---------------~ak~~~~~~P--~lI~v~T~kG~-------G~~~ae~~~~~~Hg 446 (784)
++..||| | |+++|.+++. ++++...++| ++|+++|.||+ |.+ +|+. .++|+
T Consensus 264 v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~~-~eg~-~~~H~ 341 (845)
T 3ahc_A 264 PYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKK-TEGS-WRAHQ 341 (845)
T ss_dssp EEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTEE-CTTS-GGGSS
T ss_pred EeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCcc-cCCC-ccccC
Confidence 8657899 9 9999887754 2332123689 99999999999 984 6654 68898
Q ss_pred ccc-------------------------ccc------------ccccc------------cC-----CC-----------
Q 003948 447 VVK-------------------------FDP------------KTGKQ------------FK-----TK----------- 461 (784)
Q Consensus 447 ~~~-------------------------fd~------------~~g~~------------~~-----~~----------- 461 (784)
++. |+. .+|.. +. +.
T Consensus 342 ~pl~~~~~~~~~~~~l~~wl~~~~p~elF~~~~~~~~~~~~~~~~g~~r~~~~P~~~~g~l~~~~~lp~~~~~~~~~~~~ 421 (845)
T 3ahc_A 342 VPLASARDTEEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQYEVTGVKE 421 (845)
T ss_dssp CSCTTTTTCHHHHHHHHHHHHHTCGGGTBCTTSCBCHHHHTTSCCGGGSTTTCGGGGGGGTCCCCCCCCGGGGCCTHHHH
T ss_pred CCCCCcccCHHHHHHHhhhccCCCchhccCCchHHHHHHHHhCcchHhHhhhCHHhcCCcCccccCCCChHhhhcccccc
Confidence 752 221 00100 00 00
Q ss_pred ---C-chhhHHHHHHHHHHHHHhhCCC-EEEEecCCCCCCChhhhHHh---------C--C--------CCeeeccccHH
Q 003948 462 ---S-PTLTYTQYFAESLIKEAETDDK-IVAIHAAMGGGTGLNYFQKR---------F--P--------DRCFDVGIAEQ 517 (784)
Q Consensus 462 ---~-~~~s~~~af~~aL~~l~~~d~~-iv~i~aD~ggs~gl~~f~~~---------~--p--------~R~~d~GIaE~ 517 (784)
. ....-+.+++++|.++++.+|+ ++++++|+.+|+.+..|.+. + | +|||+ ||+||
T Consensus 422 ~~~g~~~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh 500 (845)
T 3ahc_A 422 YGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEH 500 (845)
T ss_dssp HCTTEEEECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHH
T ss_pred ccCCccchhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecHH
Confidence 0 0113467888999999999999 99999999999999888777 6 7 89999 99999
Q ss_pred HHHHHHHHHHhcCCeeEEEecHhHH---HHHHHH----HHHHhhcC----CC-CEEEEeeCCCC-CCCCCCCcCc--hhh
Q 003948 518 HAVTFAAGLASEGVKPFCAIYSSFL---QRGYDQ----VVHDVDLQ----KL-PVRFAMDRAGL-VGADGPTHCG--AFD 582 (784)
Q Consensus 518 ~~vg~AaGlA~~G~~P~~~tys~Fl---~ra~dQ----i~~~~a~~----~l-pV~~v~~~~G~-~G~dG~THq~--~~d 582 (784)
+|+++++|+|++|.+||+.+|++|+ .|+++| |+..++++ .. +|++++++.|+ +|+||+|||+ .+|
T Consensus 501 ~M~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d 580 (845)
T 3ahc_A 501 QCEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTS 580 (845)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHH
T ss_pred HHHHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHH
Confidence 9999999999999999999998887 899999 86653443 45 69999999998 7999999999 455
Q ss_pred HhHhc---cCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEcCCCCCccccCCCCCCCC---CccccceeEe---ee--
Q 003948 583 VTFMS---CLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGT---PLEIGKGRIL---ME-- 651 (784)
Q Consensus 583 la~lr---~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl~r~~~~~~~~p~~~~~~---~~~igk~~vl---re-- 651 (784)
+..++ .+||+.|++|+|++|+..+++.|++..+.|.+++++|++++... +. +. .+..|++.+. ++
T Consensus 581 ~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~~p~~~-~~---~~a~~~~~~G~~v~~~as~d~~ 656 (845)
T 3ahc_A 581 LLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTWV-TL---DEARAELEAGAAEWKWASNAEN 656 (845)
T ss_dssp HHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCSCEEECS-CH---HHHHHHHHHSEEECTTTCCCSS
T ss_pred HHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccC-Cc---hhhhhhhcCCeEEEEeeccccc
Confidence 55555 78999999999999999999999986666666777999865321 11 11 2445655555 35
Q ss_pred C--CcEEEEEechhH-HHHHHHHHHHhcCCCcEEEeecccc---CCCcHHHHHHHhccCCeEEEEcCCC---cCCcHHHH
Q 003948 652 G--DRVAILGYGSIV-QQCVLAANMLKSQDISVTVADARFC---KPLDTDLIRQLANEHEILITVEEGS---VGGFGSHV 722 (784)
Q Consensus 652 G--~dvtIva~Gs~v-~~aleAae~L~~~GI~v~VId~~sl---kPlD~e~i~~~~~~~~~vVvvEe~~---~gG~gs~V 722 (784)
| .||+||++|+++ .+|++|+++|+++||+++|||+.++ +|.+++.+....+..+.|+++|++. .||+++.|
T Consensus 657 g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV 736 (845)
T 3ahc_A 657 NDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYHSYAQDV 736 (845)
T ss_dssp TTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEESSCHHHH
T ss_pred CCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceeeecCcHHHH
Confidence 5 799999999775 5699999999999999999999999 6666443322333456788888886 49999999
Q ss_pred HHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 003948 723 CHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 723 ~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll~ 776 (784)
++.+.++. .+.++.++|++| |+.+|++.++++++|||.++|++++++++.
T Consensus 737 ~ell~~r~---~~~~l~v~G~~d-~G~tgtp~eLl~~~gld~~~Iv~~a~~~l~ 786 (845)
T 3ahc_A 737 RGLIYDRP---NHDNFHVVGYKE-QGSTTTPFDMVRVNDMDRYALQAAALKLID 786 (845)
T ss_dssp HHHTTTST---TGGGEEEECCCS-CCCSCCHHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHhCC---CCceEEEEeccC-CCCCCCHHHHHHHhCcCHHHHHHHHHHHcc
Confidence 99998762 145899999999 999999999999999999999999999886
No 16
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=2.5e-59 Score=564.64 Aligned_cols=553 Identities=15% Similarity=0.140 Sum_probs=395.6
Q ss_pred CCCHHHHHHHHH-HHHHHHHH--Hhhc-cCCCCCCCCcHHHHHHHHhhccC-----CCCcEEEeCCCchHHHHHHH--hC
Q 003948 154 NLSTEDLEQLAA-ELRADIVN--SVSK-TGGHLSANLGVVELTLALHRVFN-----TPDDKIIWDVGHQAYVHKIL--TG 222 (784)
Q Consensus 154 ~~~~~~L~~la~-~iR~~ii~--~v~~-~gGH~gsslg~~el~vaL~~~~~-----~p~D~~i~s~GH~~y~~~~l--~G 222 (784)
+++.+++.++-+ -++.+.++ +..+ .+|-.-+..|+.-+.+++.+.++ .++|.++- ..|+.+.+.+. .|
T Consensus 194 ~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~g-~~hRg~~~~Lan~~G 272 (933)
T 2jgd_A 194 TFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLG-MAHRGRLNVLVNVLG 272 (933)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEEE-CCSTTHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEec-CCCcCHHHHHHHHhC
Confidence 466666555432 22333333 3332 33333346777777776655443 25676652 47999999888 77
Q ss_pred c--hHHhHHHHhc-CCCCC--CCCCC----C---Ccc------cccCCcccchhHHHHHHHHHHHHHhC-----CCCeEE
Q 003948 223 R--RSRMNTMRKT-SGLAG--FPKRE----E---SVH------DAFGAGHSSTSISAGLGMAVARDILG-----KNNNVI 279 (784)
Q Consensus 223 ~--~~~l~~~r~~-ggl~g--~~~~~----e---~~~------~~~g~G~~G~~ls~AvG~AlA~~~~g-----~~~~Vv 279 (784)
. .+.|..|.-. .+.+| -.+.. . .++ ..+..+|+|+++|+|+|+|+|+++++ .++++|
T Consensus 273 ~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv 352 (933)
T 2jgd_A 273 KKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPI 352 (933)
T ss_dssp CCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEE
T ss_pred CCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHHhhccccCCCCeEEE
Confidence 5 4556666322 11111 10000 0 001 13678999999999999999999884 678999
Q ss_pred EEEcCCcc-cchhhHHHHHHHhhcCCC---EEEEEECCCCCCcCc-cCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHH
Q 003948 280 SVIGDGAM-TAGQAYEAMNNAGFLDAN---LIVVLNDNKQVSLPT-ATLDGPATPVGALSSALSKLQASTNFRKLREAAK 354 (784)
Q Consensus 280 ~viGDGal-~eG~~~EAln~A~~~~~n---livIv~dN~~~s~~t-~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~ 354 (784)
|++|||++ ++|++|||||+|+.+++| +|+||+||++ ++.| ...+.. .
T Consensus 353 ~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~-~ist~~~~~~~------~--------------------- 404 (933)
T 2jgd_A 353 TIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV-GFTTSNPLDAR------S--------------------- 404 (933)
T ss_dssp EEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-----------------------------------------
T ss_pred EEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCc-cccCCCHHhcc------c---------------------
Confidence 99999998 999999999999999999 9999999985 4322 111000 0
Q ss_pred HhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEecCCC
Q 003948 355 SITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVTEKGK 432 (784)
Q Consensus 355 ~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~--~~~~P~lI~v~T~kG~ 432 (784)
...+ ..+++++||.++ .|||+|++++.++++++++. ...+|++|++.|.+++
T Consensus 405 ---------~~~~----------------~~~a~a~g~p~~-~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~ 458 (933)
T 2jgd_A 405 ---------TPYC----------------TDIGKMVQAPIF-HVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRH 458 (933)
T ss_dssp -----------CG----------------GGGGGTTTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_pred ---------chhH----------------HHHHHHcCCCEE-EECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeec
Confidence 0111 234899999987 78999999999999887642 2478999999999999
Q ss_pred CCChhhh---------------------------------------------------------------cccccCcccc
Q 003948 433 GYPPAEA---------------------------------------------------------------AADRMHGVVK 449 (784)
Q Consensus 433 G~~~ae~---------------------------------------------------------------~~~~~Hg~~~ 449 (784)
|+...+. ....||++.+
T Consensus 459 GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~ 538 (933)
T 2jgd_A 459 GHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLN 538 (933)
T ss_dssp -----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSS
T ss_pred CcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccccc
Confidence 9743211 0012344332
Q ss_pred c----ccccccccC-------------C--------------------CCchhhHHHHHHHHHHHHHhhCCCEEEEecCC
Q 003948 450 F----DPKTGKQFK-------------T--------------------KSPTLTYTQYFAESLIKEAETDDKIVAIHAAM 492 (784)
Q Consensus 450 f----d~~~g~~~~-------------~--------------------~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ 492 (784)
| ++.||...+ + ..+..+|..+++.+|.+++++|++|+++++|+
T Consensus 539 ~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv 618 (933)
T 2jgd_A 539 HEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDS 618 (933)
T ss_dssp CCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred cccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCcc
Confidence 2 233332100 0 01135788999999999999999999999999
Q ss_pred CCC------------------CChhhhHHhC-CCCeeeccccHHHHHHHHHHHHhcCCe--eEEE-ecHhHHH---HHHH
Q 003948 493 GGG------------------TGLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVK--PFCA-IYSSFLQ---RGYD 547 (784)
Q Consensus 493 ggs------------------~gl~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~--P~~~-tys~Fl~---ra~d 547 (784)
+.+ ++++.|+++| |+||+|+||+|++++|+|+|+|+.|.+ |+++ +|++|++ |++|
T Consensus 619 ~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~D 698 (933)
T 2jgd_A 619 GRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVID 698 (933)
T ss_dssp TTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHH
T ss_pred CCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHH
Confidence 876 4578899999 999999999999999999999999988 9987 6999985 9999
Q ss_pred HHHHHh-h--cCCCCEEEEeeCCCCCCCCCCCcCc--hhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhC-CCCeEEE
Q 003948 548 QVVHDV-D--LQKLPVRFAMDRAGLVGADGPTHCG--AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVID-DRPSCFR 621 (784)
Q Consensus 548 Qi~~~~-a--~~~lpV~~v~~~~G~~G~dG~THq~--~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~-~~Pv~ir 621 (784)
|+++++ + .+++||+++.++ |+.| .|++||+ .+++..++++|||+|++|+|+.|+++++++++.+. ++|++|+
T Consensus 699 Qii~~~~ak~~~~~~vv~~l~~-G~~g-~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~ 776 (933)
T 2jgd_A 699 QFISSGEQKWGRMCGLVMLLPH-GYEG-QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVM 776 (933)
T ss_dssp HTTTTHHHHHCCCCCCEEEEEC-CCSS-SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEE
T ss_pred HHHHHHHHHHccCCCEEEEEeC-CCCC-CCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999888 6 479999999998 4455 4999999 56655556779999999999999999999996443 7999999
Q ss_pred cCCCCCcc-ccCCC----CCCCCCccccceeEeeeCCcE--EEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcH
Q 003948 622 FPRGNGIG-AVLPP----NNKGTPLEIGKGRILMEGDRV--AILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDT 694 (784)
Q Consensus 622 l~r~~~~~-~~~p~----~~~~~~~~igk~~vlreG~dv--tIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~ 694 (784)
+||..... ...+. ....+.+++|++.+++ |+|| +|+++|.+...+++|++.|+++ +++|||+++++|||.
T Consensus 777 ~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pld~ 853 (933)
T 2jgd_A 777 SPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMCSGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPFPH 853 (933)
T ss_dssp ECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEECTTHHHHHHHHHHHTTCC--SEEEEEECEEESCCH
T ss_pred ecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEEchHHHHHHHHHHHHcccC--CeEEEEeeccCCCCH
Confidence 99875321 11110 0123556789988877 8899 7777777777777777988765 899999999999999
Q ss_pred HHHHHHhccCC---eEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCccccc-CCCHHHHHHHcCCCHHHHHH
Q 003948 695 DLIRQLANEHE---ILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYID-HGSPADQLEESGLSSRHISA 769 (784)
Q Consensus 695 e~i~~~~~~~~---~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~-~g~~~elle~~gl~~~~I~~ 769 (784)
+.|.+.+++++ .||++||+. .||+|++|++++.+.+.. ..+++++|.||.|.+ .|..... -...+.|++
T Consensus 854 e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~--~~~v~~vg~~d~~~pa~g~~~~h----~~~~~~i~~ 927 (933)
T 2jgd_A 854 KAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF--GASLRYAGRPASASPAVGHMSVH----QKQQQDLVN 927 (933)
T ss_dssp HHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT--TCEEEEEEECCCSSSSCSCHHHH----HHHHHHHHH
T ss_pred HHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc--CCceEEEecCCcCCCCcCCHHHH----HHHHHHHHH
Confidence 99999999887 899999987 699999999999886532 358999999999998 4543322 235567777
Q ss_pred HHH
Q 003948 770 TVL 772 (784)
Q Consensus 770 ~i~ 772 (784)
++.
T Consensus 928 ~a~ 930 (933)
T 2jgd_A 928 DAL 930 (933)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 17
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=6.4e-60 Score=522.08 Aligned_cols=338 Identities=23% Similarity=0.307 Sum_probs=244.0
Q ss_pred EecCCCCCCh-hhhcccccCcccccccccccccCCCC---chhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCC----Ch
Q 003948 427 VTEKGKGYPP-AEAAADRMHGVVKFDPKTGKQFKTKS---PTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGT----GL 498 (784)
Q Consensus 427 ~T~kG~G~~~-ae~~~~~~Hg~~~fd~~~g~~~~~~~---~~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~----gl 498 (784)
.|.|||||.| +|.+..+||...+| ++||+..+... ...+|+++|+++|.+++++|++|+++++|++.+. .+
T Consensus 10 ~t~kg~g~~~~a~~~~~~~h~~~pf-~~~g~~~~~~~~~m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~ 88 (369)
T 1ik6_A 10 LVPRGSGMKETAAAKFERNHMDSPD-LGTDDDDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVT 88 (369)
T ss_dssp -----------------------------------CCSCEEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTT
T ss_pred CCCCCCCCCcchhhchhhhcccCCc-CCCCCcccccccccCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhH
Confidence 6999999999 99999999999999 99998543322 4568999999999999999999999999997332 36
Q ss_pred hhhHHhC-CCCeeeccccHHHHHHHHHHHHhcCCeeEEE-ecHhHHHHHHHHHHHHhhcC--------CCCEEEEeeCCC
Q 003948 499 NYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-IYSSFLQRGYDQVVHDVDLQ--------KLPVRFAMDRAG 568 (784)
Q Consensus 499 ~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~-tys~Fl~ra~dQi~~~~a~~--------~lpV~~v~~~~G 568 (784)
+.|+++| |+||||+||+|++|+++|+|+|+.|++||++ +|++|++|++|||++++|++ ++||+++.+++|
T Consensus 89 ~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 89 EGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp TTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 8899999 9999999999999999999999999999998 69999999999999999977 999999999988
Q ss_pred CCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHhCCCCeEEEcCCCCCcc--ccCCCCCCCCCccccce
Q 003948 569 LVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIG--AVLPPNNKGTPLEIGKG 646 (784)
Q Consensus 569 ~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~~~~Pv~irl~r~~~~~--~~~p~~~~~~~~~igk~ 646 (784)
.+| ||+|||+.+ .++|+++|||+|++|+|++|+++++++|++ .++|++||+|+..... ..+|. .++.+++|++
T Consensus 169 ~~g-~g~~hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~--~~~~~~~G~~ 243 (369)
T 1ik6_A 169 GTR-GGLYHSNSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-GDDPVVFLEPKILYRAPREEVPE--GDYVVEIGKA 243 (369)
T ss_dssp ------------H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH-SSSCEEEEEEGGGSSCCCEEEEC--SSCCCCTTCC
T ss_pred CCC-CCccccccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEEehhhhccCCCCcCC--CcccccCCce
Confidence 666 899999887 499999999999999999999999999987 7899999888754221 12332 2355788999
Q ss_pred eEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHH
Q 003948 647 RILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHF 725 (784)
Q Consensus 647 ~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~ 725 (784)
+++++|.|++|||+|++++.|++|+++|+ | +++|||+++++|||++.+.+.+++++++|++||+. .|||+++|+++
T Consensus 244 ~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~ 320 (369)
T 1ik6_A 244 RVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRAL 320 (369)
T ss_dssp EEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHH
T ss_pred EEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeeecCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHH
Confidence 99999999999999999999999999997 8 99999999999999999999998888999999997 69999999999
Q ss_pred HHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 003948 726 LTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 726 l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll~ 776 (784)
+.++++.....+++++|++|.|+++|+ +++++|+|+++|+++|+++++
T Consensus 321 l~~~~~~~l~~pv~~vg~~d~~~~~~~---l~~~~gl~~~~I~~~i~~~l~ 368 (369)
T 1ik6_A 321 VAEKALDRLTAPVIRLAGPDVPQSPIA---ADAAYAPTVERIIKAIEYVMR 368 (369)
T ss_dssp HHHHSGGGCSSCCEEEEECCCC---------------CHHHHHHHHHHHHT
T ss_pred HHhhCccccCCCeEEEcCCCcCCCCHH---HHHHhCcCHHHHHHHHHHHhh
Confidence 998875323467899999999999987 899999999999999999874
No 18
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=9.6e-55 Score=522.18 Aligned_cols=540 Identities=16% Similarity=0.132 Sum_probs=374.6
Q ss_pred cCCCHHHHHHHHH-HHHHHHHH--Hhhc-cCCCCCCCCcHHHHHHHHhhccC-----CCCcEEEeCCCchHHHHHHH--h
Q 003948 153 KNLSTEDLEQLAA-ELRADIVN--SVSK-TGGHLSANLGVVELTLALHRVFN-----TPDDKIIWDVGHQAYVHKIL--T 221 (784)
Q Consensus 153 k~~~~~~L~~la~-~iR~~ii~--~v~~-~gGH~gsslg~~el~vaL~~~~~-----~p~D~~i~s~GH~~y~~~~l--~ 221 (784)
.+++.+++.++-+ -++.+.++ +..+ .+|-..+..|+.-+.+++-..++ .++|.++ ...|+...+.+. .
T Consensus 113 ~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~-gm~hRg~~~~Lan~~ 191 (868)
T 2yic_A 113 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVI-AMPHRGRLNVLANIV 191 (868)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEE-ECCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEE-eccccchHHHHHHHh
Confidence 3566666555432 22222233 2222 23334455777666666654432 3567555 347999988888 6
Q ss_pred Cc--hHHhHHHHhc-CCC----CCCCCCC--CCc-------------ccccCCcccchhHHHHHHHHHHHHHhC------
Q 003948 222 GR--RSRMNTMRKT-SGL----AGFPKRE--ESV-------------HDAFGAGHSSTSISAGLGMAVARDILG------ 273 (784)
Q Consensus 222 G~--~~~l~~~r~~-ggl----~g~~~~~--e~~-------------~~~~g~G~~G~~ls~AvG~AlA~~~~g------ 273 (784)
|. ++.|..|.-. .+. +|..+.. .+. ......||+|+++|.|+|+|+|.++++
T Consensus 192 G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~ 271 (868)
T 2yic_A 192 GKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEG 271 (868)
T ss_dssp CCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTS
T ss_pred CCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCccc
Confidence 74 3444444110 011 0110000 000 011236799999999999999999874
Q ss_pred ----CCCeEEEEEcCCcc-cchhhHHHHHHHhhcCCC---EEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhh
Q 003948 274 ----KNNNVISVIGDGAM-TAGQAYEAMNNAGFLDAN---LIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTN 345 (784)
Q Consensus 274 ----~~~~Vv~viGDGal-~eG~~~EAln~A~~~~~n---livIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~ 345 (784)
.+..+||++|||++ ++|.+|||||+|+.+++| +++||+||++ .+.|...+.
T Consensus 272 ~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~-g~st~~~~~-------------------- 330 (868)
T 2yic_A 272 SDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQI-GFTTAPTDS-------------------- 330 (868)
T ss_dssp SSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSC-BTTBCHHHH--------------------
T ss_pred ccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCc-ccccCcccc--------------------
Confidence 56789999999996 899999999999999987 9999999974 322211000
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcC--CCCCcEE
Q 003948 346 FRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVL 423 (784)
Q Consensus 346 ~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~--~~~~P~l 423 (784)
+ -..+...++++|||.++ .|||||++++.+++++|.+. ..++|++
T Consensus 331 ------------------------------~--s~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~ar~~~~Pvl 377 (868)
T 2yic_A 331 ------------------------------R--SSEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDVV 377 (868)
T ss_dssp ------------------------------C--SSSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred ------------------------------c--cccCHHHHHHhCCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 0 00111235899999987 79999999999999887631 2479999
Q ss_pred EEEEecCCCCCChhhhcc-------cccCccc-c---------------------------------------ccc----
Q 003948 424 IHVVTEKGKGYPPAEAAA-------DRMHGVV-K---------------------------------------FDP---- 452 (784)
Q Consensus 424 I~v~T~kG~G~~~ae~~~-------~~~Hg~~-~---------------------------------------fd~---- 452 (784)
|+++|.+++|++..+... ..|+... + +.+
T Consensus 378 Ie~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~ 457 (868)
T 2yic_A 378 IDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIE 457 (868)
T ss_dssp EEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEEEeecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999997543210 1122110 0 000
Q ss_pred ---------------cccc----------c---cCCCC---chh----hHHH----------HHHHHH--HHHHhhCCCE
Q 003948 453 ---------------KTGK----------Q---FKTKS---PTL----TYTQ----------YFAESL--IKEAETDDKI 485 (784)
Q Consensus 453 ---------------~~g~----------~---~~~~~---~~~----s~~~----------af~~aL--~~l~~~d~~i 485 (784)
.|+. . .++.. +.. .-+. +++++| -.+++++++|
T Consensus 458 ~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~l~~~~~~V 537 (868)
T 2yic_A 458 PSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLV 537 (868)
T ss_dssp --------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEE
T ss_pred cccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 0000 0 00000 000 1111 233332 2458999999
Q ss_pred EEEecCCCCCC------------------Chhhh------HH-hCCCCeeeccccHHHHHHHHHHHHhcCC--eeEEE-e
Q 003948 486 VAIHAAMGGGT------------------GLNYF------QK-RFPDRCFDVGIAEQHAVTFAAGLASEGV--KPFCA-I 537 (784)
Q Consensus 486 v~i~aD~ggs~------------------gl~~f------~~-~~p~R~~d~GIaE~~~vg~AaGlA~~G~--~P~~~-t 537 (784)
+++++|++.+| .+++| ++ .+|+|++|+||+|++++|+|+|+|+.|. +|+++ +
T Consensus 538 ~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaq 617 (868)
T 2yic_A 538 RLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQ 617 (868)
T ss_dssp EEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred EEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEe
Confidence 99999998752 25678 55 7899999999999999999999999995 55555 5
Q ss_pred cHhHHHHH---HHHHHHHh---hcCCCCEEEEeeCCCCCCCCCCCcCc--hhhHhHhccCCCcEEEecCCHHHHHHHHHH
Q 003948 538 YSSFLQRG---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCG--AFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (784)
Q Consensus 538 ys~Fl~ra---~dQi~~~~---a~~~lpV~~v~~~~G~~G~dG~THq~--~~dla~lr~iPn~~V~~Psd~~E~~~~l~~ 609 (784)
|++|+++| +||+++++ ..+++||+++.+++| .| +||+|++ .+++..|+++|||+|+.|+|+.|+++++++
T Consensus 618 f~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~-~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~ 695 (868)
T 2yic_A 618 FGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRR 695 (868)
T ss_dssp SGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHH
T ss_pred hHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC-CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHH
Confidence 99999877 99998876 356999999999877 67 8999998 777777799999999999999999999999
Q ss_pred HHHhC-CCCeEEEcCCCCCcc-ccCCCC----CCCCCccccceeE---eeeCCcE--EEEEechhHHHHHHHHHHHhcCC
Q 003948 610 AAVID-DRPSCFRFPRGNGIG-AVLPPN----NKGTPLEIGKGRI---LMEGDRV--AILGYGSIVQQCVLAANMLKSQD 678 (784)
Q Consensus 610 A~~~~-~~Pv~irl~r~~~~~-~~~p~~----~~~~~~~igk~~v---lreG~dv--tIva~Gs~v~~aleAae~L~~~G 678 (784)
++..+ ++|++|++||..+.. ...++. ...+..++|++.+ +++|+|| +|||+|.+ ..++++++ +++|
T Consensus 696 a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~-~~~l~aa~--~~~g 772 (868)
T 2yic_A 696 HGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKEN 772 (868)
T ss_dssp HHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTH-HHHHHHHH--HHHT
T ss_pred HHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHH-HHHHHHHH--HhCC
Confidence 88753 489999999864211 111110 0123336899887 7899999 99999998 67776665 5568
Q ss_pred -CcEEEeeccccCCCcHHHHHHHhccCCe---EEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccC-CC
Q 003948 679 -ISVTVADARFCKPLDTDLIRQLANEHEI---LITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDH-GS 752 (784)
Q Consensus 679 -I~v~VId~~slkPlD~e~i~~~~~~~~~---vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~-g~ 752 (784)
++++|||+++|+|||.++|.+.++++++ +|++||+. .||++++|++.+.+. +...+.+++++|.+|.+.+. |.
T Consensus 773 ~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~-~~~l~~~v~~vg~~d~~~p~~g~ 851 (868)
T 2yic_A 773 REDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLKRISRRAMSAPSSGS 851 (868)
T ss_dssp CTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-CHHHHTTCEEEEECCCSSSSCSC
T ss_pred CCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHH-hhhcCCCeEEeccCCcCCCCCCC
Confidence 9999999999999999999999999876 88898876 699999999999873 21113578999999999984 55
Q ss_pred H
Q 003948 753 P 753 (784)
Q Consensus 753 ~ 753 (784)
.
T Consensus 852 ~ 852 (868)
T 2yic_A 852 S 852 (868)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=2.3e-54 Score=470.79 Aligned_cols=304 Identities=22% Similarity=0.275 Sum_probs=273.0
Q ss_pred hhHHHHHHHHHHHHHhhCCCEEEEecCCCCCC----ChhhhHHhC-CCCeeeccccHHHHHHHHHHHHhcCCeeEEE-ec
Q 003948 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGT----GLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-IY 538 (784)
Q Consensus 465 ~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~----gl~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~-ty 538 (784)
++|+++|+++|.+++++|++|+++++|++.+. .++.|+++| |+||||+||+|++|+++|+|+|+.|++||++ +|
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~ 82 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQF 82 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSS
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecc
Confidence 57999999999999999999999999997533 347899999 9999999999999999999999999999998 69
Q ss_pred HhHHHHHHHHHHHHhhc--------CCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHH
Q 003948 539 SSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (784)
Q Consensus 539 s~Fl~ra~dQi~~~~a~--------~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A 610 (784)
++|++|++|||++++|+ +++|++++.++ |..|.+|+||++ +|.++++++|||+|++|+|++|+++++++|
T Consensus 83 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a 160 (324)
T 1w85_B 83 FGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISA 160 (324)
T ss_dssp GGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999997 89999999885 556778889998 667999999999999999999999999999
Q ss_pred HHhCCCCeEEEcCCCCCcc--ccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccc
Q 003948 611 AVIDDRPSCFRFPRGNGIG--AVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARF 688 (784)
Q Consensus 611 ~~~~~~Pv~irl~r~~~~~--~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~s 688 (784)
++ .++|++||+|+..... ..+|. .++.+++||++++++|+|++|||+|++++.|++|++.|+++|++++|||+++
T Consensus 161 ~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 237 (324)
T 1w85_B 161 IR-DNDPVIFLEHLKLYRSFRQEVPE--GEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT 237 (324)
T ss_dssp HH-SSSCEEEEEETTTSSSCCEECCS--SCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSE
T ss_pred HH-cCCCEEEEechHhcCCCCCCCCC--ccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeee
Confidence 87 7899999888765321 22332 2356789999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHH
Q 003948 689 CKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 767 (784)
Q Consensus 689 lkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I 767 (784)
++|||++.+.+.+++++++|++||+. .|||+++|++++.++++.....+++++|++|.|+++|+ +++++|+|+++|
T Consensus 238 l~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~---l~~~~gl~~~~I 314 (324)
T 1w85_B 238 VQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ---AESVWLPNFKDV 314 (324)
T ss_dssp EESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---GHHHHSCCHHHH
T ss_pred ecCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH---HHHHhCcCHHHH
Confidence 99999999999999888999999996 79999999999998765333467899999999999987 899999999999
Q ss_pred HHHHHHHhc
Q 003948 768 SATVLSLLG 776 (784)
Q Consensus 768 ~~~i~~ll~ 776 (784)
+++|+++++
T Consensus 315 ~~~i~~~l~ 323 (324)
T 1w85_B 315 IETAKKVMN 323 (324)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999999874
No 20
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=2.2e-54 Score=473.54 Aligned_cols=306 Identities=20% Similarity=0.273 Sum_probs=274.6
Q ss_pred hhhHHHHHHHHHHHHHhhCCCEEEEecCCCC--C-C-ChhhhHHhC-CCCeeeccccHHHHHHHHHHHHhcCCeeEEE-e
Q 003948 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGG--G-T-GLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-I 537 (784)
Q Consensus 464 ~~s~~~af~~aL~~l~~~d~~iv~i~aD~gg--s-~-gl~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~-t 537 (784)
+.+|+++|+++|.+++++|++|+++++|++. + + .++.|+++| |+||||+||+|++|+++|+|+|+.|++||++ +
T Consensus 14 ~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~~ 93 (341)
T 2ozl_B 14 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFM 93 (341)
T ss_dssp EEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 4789999999999999999999999999983 3 2 368899999 9999999999999999999999999999998 6
Q ss_pred cHhHHHHHHHHHHHHhhc--------CCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHH
Q 003948 538 YSSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (784)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~--------~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~ 609 (784)
|++|++|++|||++++++ +++||++++++ |..|.||+||++..| ++++++|||+|++|+|++|+++++++
T Consensus 94 f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~~ 171 (341)
T 2ozl_B 94 TFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIKS 171 (341)
T ss_dssp SGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999999983 99999999997 677889999977778 89999999999999999999999999
Q ss_pred HHHhCCCCeEEEcCCCCCc-cccC----CCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEe
Q 003948 610 AAVIDDRPSCFRFPRGNGI-GAVL----PPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVA 684 (784)
Q Consensus 610 A~~~~~~Pv~irl~r~~~~-~~~~----p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VI 684 (784)
|++ .++|++||++|+... ...+ ++ ..+.+++||++++++|.|++||++|+++..|++|++.|+++|++++||
T Consensus 172 a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~--~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv 248 (341)
T 2ozl_B 172 AIR-DNNPVVVLENELMYGVPFEFPPEAQS--KDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVI 248 (341)
T ss_dssp HHH-SSSCEEEEECHHHHTCEEECCHHHHS--TTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHh-cCCCEEEEEChhhhcCCCCcCCccCC--ccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEE
Confidence 987 589999999975311 1111 22 245678999999999999999999999999999999999999999999
Q ss_pred eccccCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHh-cCCCCCCcceEEeecCcccccCCCHHHHHHHcCC
Q 003948 685 DARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTL-SGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL 762 (784)
Q Consensus 685 d~~slkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~-~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl 762 (784)
|+++++|||.+.+++.+++++++|++||+. .|||+++|++++.+ +++...+.+++++|++|.|+++|+ ++++++|+
T Consensus 249 ~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~--~l~~~~g~ 326 (341)
T 2ozl_B 249 NMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAK--ILEDNSIP 326 (341)
T ss_dssp ECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSH--HHHHTTSC
T ss_pred eeeeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcH--HHHHHhCc
Confidence 999999999999999998888999999998 69999999999998 775323468999999999999986 68899999
Q ss_pred CHHHHHHHHHHHhc
Q 003948 763 SSRHISATVLSLLG 776 (784)
Q Consensus 763 ~~~~I~~~i~~ll~ 776 (784)
|+++|+++|+++++
T Consensus 327 ~~~~I~~~i~~~l~ 340 (341)
T 2ozl_B 327 QVKDIIFAIKKTLN 340 (341)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999874
No 21
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=8e-54 Score=525.63 Aligned_cols=540 Identities=14% Similarity=0.118 Sum_probs=375.2
Q ss_pred cCCCHHHHHHHHH-HHHHHHHH--Hhhc-cCCCCCCCCcHHHHHHHHhhccC-----CCCcEEEeCCCchHHHHHHH--h
Q 003948 153 KNLSTEDLEQLAA-ELRADIVN--SVSK-TGGHLSANLGVVELTLALHRVFN-----TPDDKIIWDVGHQAYVHKIL--T 221 (784)
Q Consensus 153 k~~~~~~L~~la~-~iR~~ii~--~v~~-~gGH~gsslg~~el~vaL~~~~~-----~p~D~~i~s~GH~~y~~~~l--~ 221 (784)
.+++.+++.++-+ -++.+.++ +..+ .+|-..+..|+.-+.+++-..++ .++|.++ ...|+...+.+. .
T Consensus 358 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~-gm~hRg~~~~La~~~ 436 (1113)
T 2xt6_A 358 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVI-AMPHRGRLNVLANIV 436 (1113)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEE-ECCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEE-eccccchHHHHHHHh
Confidence 3566666555432 22222233 2222 23334445777777777655443 3567555 347999988888 6
Q ss_pred Cc--hHHhHHHHhc-CCC----CCCCCCC--CCc-------------ccccCCcccchhHHHHHHHHHHHHHhC------
Q 003948 222 GR--RSRMNTMRKT-SGL----AGFPKRE--ESV-------------HDAFGAGHSSTSISAGLGMAVARDILG------ 273 (784)
Q Consensus 222 G~--~~~l~~~r~~-ggl----~g~~~~~--e~~-------------~~~~g~G~~G~~ls~AvG~AlA~~~~g------ 273 (784)
|. ++.|..|.-. .+. +|..+.. .+. .....+||+|+++|.|+|+|+|.++++
T Consensus 437 G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~ 516 (1113)
T 2xt6_A 437 GKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEG 516 (1113)
T ss_dssp CCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTTS
T ss_pred CCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccCcc
Confidence 74 3444444211 011 1110000 000 011236899999999999999999876
Q ss_pred ----CCCeEEEEEcCCcc-cchhhHHHHHHHhhcCCC---EEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhh
Q 003948 274 ----KNNNVISVIGDGAM-TAGQAYEAMNNAGFLDAN---LIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTN 345 (784)
Q Consensus 274 ----~~~~Vv~viGDGal-~eG~~~EAln~A~~~~~n---livIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~ 345 (784)
.+..+||++|||++ ++|.+|||||+|+.+++| +|+||+||++ .+.|...+...
T Consensus 517 ~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~-gist~~~~~~s------------------ 577 (1113)
T 2xt6_A 517 SDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQI-GFTTAPTDSRS------------------ 577 (1113)
T ss_dssp SBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSC-BTTBCHHHHCS------------------
T ss_pred ccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCc-ccccCcccccc------------------
Confidence 56889999999995 899999999999999987 9999999975 33221000000
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcC--CCCCcEE
Q 003948 346 FRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVL 423 (784)
Q Consensus 346 ~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~--~~~~P~l 423 (784)
..+...++++|||.++ .|||||++++.+++++|.+. ..++|++
T Consensus 578 ----------------------------------~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~~r~~~~Pvl 622 (1113)
T 2xt6_A 578 ----------------------------------SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDVV 622 (1113)
T ss_dssp ----------------------------------SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred ----------------------------------ccCHHHHHHhcCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 0111234899999987 79999999999998877641 2479999
Q ss_pred EEEEecCCCCCChhhhcc-------ccc--Cccc--------------------------------------cccc-c--
Q 003948 424 IHVVTEKGKGYPPAEAAA-------DRM--HGVV--------------------------------------KFDP-K-- 453 (784)
Q Consensus 424 I~v~T~kG~G~~~ae~~~-------~~~--Hg~~--------------------------------------~fd~-~-- 453 (784)
|+++|++++|++...... ..| |.-+ .+.+ .
T Consensus 623 Ie~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~ 702 (1113)
T 2xt6_A 623 IDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIE 702 (1113)
T ss_dssp EEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999997543210 001 1100 0000 0
Q ss_pred ----------------ccc-------------ccCCCC----c-hh--hHHH------HHHHHHH------HHHhhCCCE
Q 003948 454 ----------------TGK-------------QFKTKS----P-TL--TYTQ------YFAESLI------KEAETDDKI 485 (784)
Q Consensus 454 ----------------~g~-------------~~~~~~----~-~~--s~~~------af~~aL~------~l~~~d~~i 485 (784)
|+. ..++.. + .. .-+. ++..++. .+++++++|
T Consensus 703 ~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~V 782 (1113)
T 2xt6_A 703 PSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLV 782 (1113)
T ss_dssp --------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEE
T ss_pred cccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 000 000000 0 00 0010 1112233 348999999
Q ss_pred EEEecCCCCCC------------------Chhhh------HH-hCCCCeeeccccHHHHHHHHHHHHhcCC--eeEEE-e
Q 003948 486 VAIHAAMGGGT------------------GLNYF------QK-RFPDRCFDVGIAEQHAVTFAAGLASEGV--KPFCA-I 537 (784)
Q Consensus 486 v~i~aD~ggs~------------------gl~~f------~~-~~p~R~~d~GIaE~~~vg~AaGlA~~G~--~P~~~-t 537 (784)
+++++|++.++ .+++| ++ .+|+|++|+||+|++++|+|+|+|+.|. +|+++ .
T Consensus 783 ~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaq 862 (1113)
T 2xt6_A 783 RLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQ 862 (1113)
T ss_dssp EEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred EEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 99999998754 36788 65 6899999999999999999999999994 55666 4
Q ss_pred cHhHHHHH---HHHHHHHh---hcCCCCEEEEeeCCCCCCCCCCCcCc--hhhHhHhccCCCcEEEecCCHHHHHHHHHH
Q 003948 538 YSSFLQRG---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCG--AFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (784)
Q Consensus 538 ys~Fl~ra---~dQi~~~~---a~~~lpV~~v~~~~G~~G~dG~THq~--~~dla~lr~iPn~~V~~Psd~~E~~~~l~~ 609 (784)
|++|+++| +||+++++ +.+++||+++.+++| .| +|++|++ .+++..|+++|||+|++|+|+.|+++++++
T Consensus 863 f~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~-~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~ 940 (1113)
T 2xt6_A 863 FGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRR 940 (1113)
T ss_dssp SGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHH
T ss_pred EHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHH
Confidence 99999777 99998887 467999999999877 67 8999999 555555699999999999999999999999
Q ss_pred HHHhC-CCCeEEEcCCCCCcc-ccCCCC----CCCCCccccceeE---eeeCCcE--EEEEechhHHHHHHHHHHHhcCC
Q 003948 610 AAVID-DRPSCFRFPRGNGIG-AVLPPN----NKGTPLEIGKGRI---LMEGDRV--AILGYGSIVQQCVLAANMLKSQD 678 (784)
Q Consensus 610 A~~~~-~~Pv~irl~r~~~~~-~~~p~~----~~~~~~~igk~~v---lreG~dv--tIva~Gs~v~~aleAae~L~~~G 678 (784)
++..+ ++|++|++||..+.. ...++. ...+..++|++.+ +++|+|| +|||||.+ +.+++|++ +++|
T Consensus 941 a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~-~~~l~aa~--~~~g 1017 (1113)
T 2xt6_A 941 HGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKEN 1017 (1113)
T ss_dssp HHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECSTH-HHHHHHHH--HHHT
T ss_pred HHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECHH-HHHHHHHH--HhCC
Confidence 88753 489999999874211 111110 0123336899887 7899999 99999998 77777776 5668
Q ss_pred -CcEEEeeccccCCCcHHHHHHHhccCCe---EEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccC-CC
Q 003948 679 -ISVTVADARFCKPLDTDLIRQLANEHEI---LITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDH-GS 752 (784)
Q Consensus 679 -I~v~VId~~slkPlD~e~i~~~~~~~~~---vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~-g~ 752 (784)
++++|||+++|+|||.+.|.+.++++++ +|++||+. .||++++|++.+.+. +.....+++++|.+|.+.+. |.
T Consensus 1018 ~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~-~~~l~~~~~~vg~~d~~~p~~g~ 1096 (1113)
T 2xt6_A 1018 REDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLKRISRRAMSAPSSGS 1096 (1113)
T ss_dssp CTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-SHHHHTTCEEEEECCCSSSSCSC
T ss_pred CCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHH-hhhcCCCeEEEccCCcCCCCCCC
Confidence 9999999999999999999999999887 89998886 699999999999873 21113578999999999984 54
Q ss_pred H
Q 003948 753 P 753 (784)
Q Consensus 753 ~ 753 (784)
.
T Consensus 1097 ~ 1097 (1113)
T 2xt6_A 1097 S 1097 (1113)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=7.9e-54 Score=466.59 Aligned_cols=304 Identities=20% Similarity=0.248 Sum_probs=271.8
Q ss_pred hhhHHHHHHHHHHHHHhhCCCEEEEecCCCCCC----ChhhhHHhC-CCCeeeccccHHHHHHHHHHHHhcCCeeEEE-e
Q 003948 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGT----GLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-I 537 (784)
Q Consensus 464 ~~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~----gl~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~-t 537 (784)
..+|+++|+++|.+++++|++|+++++|++.+. .++.|+++| |+||||+||+|++|+++|+|+|++|++||++ +
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t 82 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ 82 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 358999999999999999999999999997533 347899999 9999999999999999999999999999998 6
Q ss_pred cHhHHHHHHHHHHHHhhc--------CCCCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHH
Q 003948 538 YSSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (784)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~--------~~lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~ 609 (784)
|++|++|++|||++++|+ +++|++++.++ |..|.+|++|++ +|.++++++||++|++|+|++|+++++++
T Consensus 83 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 160 (324)
T 1umd_B 83 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKA 160 (324)
T ss_dssp SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999999997 89999999885 556778888888 78899999999999999999999999999
Q ss_pred HHHhCCCCeEEEcCCCCCc--cccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeecc
Q 003948 610 AAVIDDRPSCFRFPRGNGI--GAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687 (784)
Q Consensus 610 A~~~~~~Pv~irl~r~~~~--~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~ 687 (784)
|++ .++|++|++|+.... ...+|+ ..+.+++||++++++|.|++||++|++++.|++|++.|+++||+++|||++
T Consensus 161 a~~-~~~Pv~i~~p~~l~~~~~~~~~~--~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 237 (324)
T 1umd_B 161 AIR-DEDPVVFLEPKRLYRSVKEEVPE--EDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLR 237 (324)
T ss_dssp HHH-CSSCEEEEEEGGGSSSCCEECCS--SCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHh-cCCCEEEEechHhcCCCCCCcCC--CCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 997 789999987765421 122332 235678999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHH
Q 003948 688 FCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRH 766 (784)
Q Consensus 688 slkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~ 766 (784)
+++|||++.+++.+++++++|++||+. .|||+++|++++.++++.....+++++|++|.|+++| +++++|+|+++
T Consensus 238 ~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~----l~~~~g~~~~~ 313 (324)
T 1umd_B 238 TLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA----QDKLYLPTVTR 313 (324)
T ss_dssp EEETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHH
T ss_pred eecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH----HHHHhCcCHHH
Confidence 999999999999998888999999997 7999999999998876432346789999999999998 89999999999
Q ss_pred HHHHHHHHhc
Q 003948 767 ISATVLSLLG 776 (784)
Q Consensus 767 I~~~i~~ll~ 776 (784)
|+++|+++++
T Consensus 314 I~~~i~~~l~ 323 (324)
T 1umd_B 314 ILNAAKRALD 323 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 23
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=4.9e-54 Score=471.24 Aligned_cols=316 Identities=17% Similarity=0.254 Sum_probs=272.3
Q ss_pred cccccccccCCCCchhhHHHHHHHHHHHHHhhCCCEEEEecCCCC-CC--ChhhhHHhC-CCCeeeccccHHHHHHHHHH
Q 003948 450 FDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGG-GT--GLNYFQKRF-PDRCFDVGIAEQHAVTFAAG 525 (784)
Q Consensus 450 fd~~~g~~~~~~~~~~s~~~af~~aL~~l~~~d~~iv~i~aD~gg-s~--gl~~f~~~~-p~R~~d~GIaE~~~vg~AaG 525 (784)
||+.++.+.....+..+|+++|+++|.+++++|++|+++++|++. ++ .++.|+++| |+||||+||+|++|+++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G 85 (342)
T 2bfd_B 6 FQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIG 85 (342)
T ss_dssp --------CCSCEEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHH
T ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHH
Confidence 556555443333345689999999999999999999999999973 22 458899999 99999999999999999999
Q ss_pred HHhcCCeeEEE-ecHhHHHHHHHHHHHHhhcCCC---------CEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEE
Q 003948 526 LASEGVKPFCA-IYSSFLQRGYDQVVHDVDLQKL---------PVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVM 595 (784)
Q Consensus 526 lA~~G~~P~~~-tys~Fl~ra~dQi~~~~a~~~l---------pV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~ 595 (784)
+|++|++||++ +|++|++|++|||++++|+++. ||+++.+++| +.||+|||+.+|++++|++|||+|+
T Consensus 86 ~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g--~~~G~th~~~~d~~~l~~iP~l~V~ 163 (342)
T 2bfd_B 86 IAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC--VGHGALYHSQSPEAFFAHCPGIKVV 163 (342)
T ss_dssp HHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC--CSSCGGGSSCCCHHHHHTSTTCEEE
T ss_pred HHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC--CCCCcchhhHhHHHHHhcCCCcEEE
Confidence 99999999997 6999999999999989996554 9999999877 4689999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHhCCCCeEEEcCC----CCCccccCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHH
Q 003948 596 APSDEAELMHMVATAAVIDDRPSCFRFPR----GNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAA 671 (784)
Q Consensus 596 ~Psd~~E~~~~l~~A~~~~~~Pv~irl~r----~~~~~~~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAa 671 (784)
+|+|++|+++++++|++ .++|++||+++ +..+ .+|. .++.+++||++++++|.|++|||+|++++.|++|+
T Consensus 164 ~Psd~~e~~~~l~~a~~-~~~Pv~i~~p~~l~r~~~~--~~~~--~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa 238 (342)
T 2bfd_B 164 IPRSPFQAKGLLLSCIE-DKNPCIFFEPKILYRAAAE--EVPI--EPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVA 238 (342)
T ss_dssp CCSSHHHHHHHHHHHHH-SSSCEEEEEEGGGTTSCCE--EEES--SCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHHh-cCCcEEEEecchhcCCCCC--CCCC--cccceeCCceEEeccCCCEEEEEECHHHHHHHHHH
Confidence 99999999999999987 58999997774 3222 1232 23567889999999999999999999999999999
Q ss_pred HHHhcC-CCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCccccc
Q 003948 672 NMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYID 749 (784)
Q Consensus 672 e~L~~~-GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~ 749 (784)
++|+++ ||+++|||+++++|||++.+++.+++++++|++||+. .|||+++|++++.++++.....++.++|++|.|++
T Consensus 239 ~~L~~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~ 318 (342)
T 2bfd_B 239 SMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFP 318 (342)
T ss_dssp HHHHHHHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCC
T ss_pred HHHHhhcCCCEEEEeeeecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCCh
Confidence 999998 9999999999999999999999999888999999996 79999999999988764323457899999999998
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 003948 750 HGSPADQLEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 750 ~g~~~elle~~gl~~~~I~~~i~~ll~ 776 (784)
++ +++++|+|+++|+++|+++++
T Consensus 319 ~~----l~~~~gl~~~~I~~~i~~~l~ 341 (342)
T 2bfd_B 319 HI----FEPFYIPDKWKCYDALRKMIN 341 (342)
T ss_dssp ST----THHHHSCCHHHHHHHHHHHHT
T ss_pred HH----HHHHHCcCHHHHHHHHHHHhc
Confidence 76 899999999999999999874
No 24
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=7.2e-52 Score=453.67 Aligned_cols=300 Identities=20% Similarity=0.270 Sum_probs=267.5
Q ss_pred hhHHHHHHHHHHHHHhhCCCEEEEecCCCCCC----ChhhhHHhC-CCCeeeccccHHHHHHHHHHHHhcCCeeEEE-ec
Q 003948 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGT----GLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-IY 538 (784)
Q Consensus 465 ~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~----gl~~f~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~-ty 538 (784)
.+|+++|+++|.+++++|++|+++++|++++. .++.|+++| |+||||+||+|++|+++|+|+|++|+|||++ +|
T Consensus 5 ~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t~ 84 (338)
T 1qs0_B 5 MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQF 84 (338)
T ss_dssp CCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred chHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEecc
Confidence 57999999999999999999999999997533 368899999 9999999999999999999999999999998 69
Q ss_pred HhHHHHHHHHHHHHhhcCC--------CCEEEEeeCCCCCCCCCCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHH
Q 003948 539 SSFLQRGYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (784)
Q Consensus 539 s~Fl~ra~dQi~~~~a~~~--------lpV~~v~~~~G~~G~dG~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A 610 (784)
++|++|++|||++++|+++ +||+++.+++| +.||+|||+.+|++++|++|||+|++|+|++|+++++++|
T Consensus 85 ~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g--~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A 162 (338)
T 1qs0_B 85 ADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG--GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIAS 162 (338)
T ss_dssp GGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC--SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC--CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999999998655 99999998887 6899999999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEcC----CCCCc---cc-----------cCCCCCCCCCccccceeEeeeCCcEEEEEechhHHHHHHHHH
Q 003948 611 AVIDDRPSCFRFP----RGNGI---GA-----------VLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAAN 672 (784)
Q Consensus 611 ~~~~~~Pv~irl~----r~~~~---~~-----------~~p~~~~~~~~~igk~~vlreG~dvtIva~Gs~v~~aleAae 672 (784)
++ .++|++||+| |+..+ .. .+|. ..+.+++||++++++|.|++|||+|++++.|++|++
T Consensus 163 ~~-~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa~ 239 (338)
T 1qs0_B 163 IE-CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPD--GYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE 239 (338)
T ss_dssp HH-SSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEES--SCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHH
T ss_pred Hh-cCCcEEEEEchHhhcCcccccccCccchhhcccccccCC--CCcccccCceeEecCCCCEEEEEeCHHHHHHHHHHH
Confidence 88 4899999665 54322 00 1222 234577899999999999999999999999999999
Q ss_pred HHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCC-cCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCC
Q 003948 673 MLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHG 751 (784)
Q Consensus 673 ~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~-~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g 751 (784)
. +|++++|||+++++|||++.+++.+++++++|++||+. .|||+++|++++.++++.....++.++|.+|.|.+++
T Consensus 240 ~---~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~~ 316 (338)
T 1qs0_B 240 E---SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA 316 (338)
T ss_dssp H---HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCST
T ss_pred H---cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcHH
Confidence 7 59999999999999999999999999888999999997 7999999999999887533346789999999998876
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHhc
Q 003948 752 SPADQLEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 752 ~~~elle~~gl~~~~I~~~i~~ll~ 776 (784)
+++++|+++++|+++|+++++
T Consensus 317 ----l~~~~g~~~~~I~~~i~~~l~ 337 (338)
T 1qs0_B 317 ----QEWAYFPGPSRVGAALKKVME 337 (338)
T ss_dssp ----THHHHSCCHHHHHHHHHHSSC
T ss_pred ----HHHHHCCCHHHHHHHHHHHhc
Confidence 899999999999999998764
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.96 E-value=5.8e-28 Score=266.88 Aligned_cols=230 Identities=17% Similarity=0.139 Sum_probs=183.3
Q ss_pred ccCCCHHHHHH---HHHHHHHHHHHHhh-ccCCCCCCC---CcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCc-
Q 003948 152 MKNLSTEDLEQ---LAAELRADIVNSVS-KTGGHLSAN---LGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR- 223 (784)
Q Consensus 152 ~k~~~~~~L~~---la~~iR~~ii~~v~-~~gGH~gss---lg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~- 223 (784)
.++++.+++.+ .+.++|....+++. ..+||+|++ .|+..++++++..++..+|+||+ +|+.|+|++++|+
T Consensus 30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~--s~r~~~~~~~~G~~ 107 (367)
T 1umd_A 30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFP--YYRDHGLALALGIP 107 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEEC--CTTTHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEe--CcHHHHHHHHcCCC
Confidence 35677777766 58899999999997 478998766 56666778888888665699998 8899999999998
Q ss_pred -hHHhHHHHhc------C-CCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHH
Q 003948 224 -RSRMNTMRKT------S-GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEA 295 (784)
Q Consensus 224 -~~~l~~~r~~------g-gl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EA 295 (784)
.+.|.+|++. | +.++||...+ .+....+|++|+++|.|+|+|+|.++.+++++|||++|||++++|.+|||
T Consensus 108 ~~~~l~~~~g~~~g~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Ea 186 (367)
T 1umd_A 108 LKELLGQMLATKADPNKGRQMPEHPGSKA-LNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAG 186 (367)
T ss_dssp HHHHHHHHHTBTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCcccc-cCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHH
Confidence 4788999884 3 3567875322 23345789999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh
Q 003948 296 MNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA 375 (784)
Q Consensus 296 ln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~ 375 (784)
||+|+.+++|+++||+||++ ++.+.. . .
T Consensus 187 l~~A~~~~lpvi~vv~NN~~-gi~~~~--------~----------------------------------~--------- 214 (367)
T 1umd_A 187 INFAAVQGAPAVFIAENNFY-AISVDY--------R----------------------------------H--------- 214 (367)
T ss_dssp HHHHHHTTCSEEEEEEECSE-ETTEEH--------H----------------------------------H---------
T ss_pred HHHHHHhCcCEEEEEecCCe-eeccCh--------h----------------------------------h---------
Confidence 99999999999999999994 331100 0 0
Q ss_pred hhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhc--CCCCCcEEEEEEecCCCCCChhh
Q 003948 376 RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPPAE 438 (784)
Q Consensus 376 r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~--~~~~~P~lI~v~T~kG~G~~~ae 438 (784)
..-..+...++++|||.++ .|||+|..++.++++++.+ ...++|++|+++|.|++|++.+.
T Consensus 215 -~~~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D 277 (367)
T 1umd_A 215 -QTHSPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSAD 277 (367)
T ss_dssp -HCSSSCSGGGGGGTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTC
T ss_pred -ccCCCCHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCC
Confidence 0001233456999999998 7999999999887776653 12579999999999999998763
No 26
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.91 E-value=2.7e-23 Score=229.18 Aligned_cols=222 Identities=21% Similarity=0.219 Sum_probs=167.3
Q ss_pred ccCCCHHHHHHHHHHH---HHH---HHHHhh-ccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCc-
Q 003948 152 MKNLSTEDLEQLAAEL---RAD---IVNSVS-KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR- 223 (784)
Q Consensus 152 ~k~~~~~~L~~la~~i---R~~---ii~~v~-~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~- 223 (784)
+..++.+++.++-+.+ |.. +..... +.-|+.+++.|...+.+++...++ |+|.++. .|+.++|.+..|.
T Consensus 38 ~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~-~~D~v~~--~~R~~~~~~~~G~~ 114 (368)
T 1w85_A 38 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALE-KEDFILP--GYRDVPQIIWHGLP 114 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCC-TTCEEEC--CSSCHHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcC-CcCEEEe--cchhHHHHHhcCCC
Confidence 4567878777765433 433 222222 123788899999999999988884 7898776 4999999999997
Q ss_pred -hHHhHHHHhc--CCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHh
Q 003948 224 -RSRMNTMRKT--SGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAG 300 (784)
Q Consensus 224 -~~~l~~~r~~--ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~ 300 (784)
...|..+.-. |+ +.|+ ..+...+.|++|+++|+|+|+|+|.++++++++|||++|||++++|++||+||+|+
T Consensus 115 ~~~~~~el~G~~~G~-~~h~----~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~ 189 (368)
T 1w85_A 115 LYQAFLFSRGHFHGN-QIPE----GVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAG 189 (368)
T ss_dssp HHHHHHHHHTCGGGG-CCCT----TCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCC-CCCc----ccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHH
Confidence 3445555322 22 2222 12344578999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccC
Q 003948 301 FLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLIS 380 (784)
Q Consensus 301 ~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~ 380 (784)
.+++|+++||+||++ ++.+.... ..-.
T Consensus 190 ~~~lpvi~vv~NN~~-gi~~~~~~----------------------------------------------------~~~~ 216 (368)
T 1w85_A 190 AFKAPAIFVVQNNRF-AISTPVEK----------------------------------------------------QTVA 216 (368)
T ss_dssp HTTCCEEEEEEECSE-ETTEEGGG----------------------------------------------------TCSC
T ss_pred HHCcCEEEEEEcCCc-cceecccc----------------------------------------------------ccCC
Confidence 999999999999984 32211100 0001
Q ss_pred CCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEecCCCCCC
Q 003948 381 ASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVTEKGKGYP 435 (784)
Q Consensus 381 ~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~--~~~~P~lI~v~T~kG~G~~ 435 (784)
++...++++|||.++ .|||||++++.++++++.+. ..++|++|+++|.+.+|++
T Consensus 217 ~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs 272 (368)
T 1w85_A 217 KTLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHT 272 (368)
T ss_dssp SCSGGGGGGTTCCEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSC
T ss_pred CCHHHHHHHCCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCC
Confidence 223455999999987 78999999999999888741 2579999999999999987
No 27
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.91 E-value=3.1e-23 Score=228.28 Aligned_cols=229 Identities=21% Similarity=0.218 Sum_probs=165.8
Q ss_pred cccccCCCHHHHHHHHHHH---HHHHHHHhh-----ccCCCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHH
Q 003948 149 PIHMKNLSTEDLEQLAAEL---RADIVNSVS-----KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKIL 220 (784)
Q Consensus 149 p~~~k~~~~~~L~~la~~i---R~~ii~~v~-----~~gGH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l 220 (784)
|.+..+++.++|.++-+.+ |..=..+.. +..|+.+++.|+..+.+++...++ |.|.++. +|+.++|.+.
T Consensus 25 ~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~-~~D~i~~--~yR~~~~~~~ 101 (365)
T 2ozl_A 25 PPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN-PTDHLIT--AYRAHGFTFT 101 (365)
T ss_dssp SCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC-TTSEEEC--CSCCHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC-CCCEEeh--HHHHHHHHHh
Confidence 4555677777777664333 332222221 235888899999999999988884 7898887 7999999999
Q ss_pred hCc--hHHhHHHHhc--C---CCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhH
Q 003948 221 TGR--RSRMNTMRKT--S---GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAY 293 (784)
Q Consensus 221 ~G~--~~~l~~~r~~--g---gl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~ 293 (784)
.|. .+.|..|.-. | |.+|..+.. +....-+.|++|+++|+|+|+|+|.++++.++.|||++|||++++|++|
T Consensus 102 ~G~~~~~i~~e~~g~~~g~~~g~gg~~H~~-~~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~ 180 (365)
T 2ozl_A 102 RGLSVREILAELTGRKGGCAKGKGGSMHMY-AKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIF 180 (365)
T ss_dssp TTCCHHHHHHHHTTCTTSTTTTSSCTTCCC-BTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHH
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCCCcC-ccccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHH
Confidence 997 4555555321 1 112222211 1222234599999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHH
Q 003948 294 EAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDE 373 (784)
Q Consensus 294 EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~ 373 (784)
|+||+|+.+++|+++||+||++ ++.|.. . +
T Consensus 181 Ealn~A~~~~lpvi~vv~NN~~-g~~t~~--------~-------~---------------------------------- 210 (365)
T 2ozl_A 181 EAYNMAALWKLPCIFICENNRY-GMGTSV--------E-------R---------------------------------- 210 (365)
T ss_dssp HHHHHHHHTTCCEEEEEEECSE-ETTEEH--------H-------H----------------------------------
T ss_pred HHHHHHHHHCcCEEEEEECCCc-ccCCCc--------c-------c----------------------------------
Confidence 9999999999999999999974 221100 0 0
Q ss_pred HhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEecCCCCCChh
Q 003948 374 YARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVTEKGKGYPPA 437 (784)
Q Consensus 374 ~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~--~~~~P~lI~v~T~kG~G~~~a 437 (784)
....++... +++|+.++ .|||||++++.+++++|.+. ..++|++|++.|.+..|++..
T Consensus 211 ---~~~~~~~~~--ra~g~p~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~ 270 (365)
T 2ozl_A 211 ---AAASTDYYK--RGDFIPGL-RVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMS 270 (365)
T ss_dssp ---HCSCCCGGG--TTTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTT
T ss_pred ---ccCCCCHHH--HhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCC
Confidence 000011111 57899887 78999999999998877531 358999999999999998743
No 28
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.90 E-value=8.2e-23 Score=227.71 Aligned_cols=227 Identities=17% Similarity=0.133 Sum_probs=164.7
Q ss_pred cCCCHHHHHHHH-HHHHHHHHH--Hhhc-cC---CCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCc--
Q 003948 153 KNLSTEDLEQLA-AELRADIVN--SVSK-TG---GHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR-- 223 (784)
Q Consensus 153 k~~~~~~L~~la-~~iR~~ii~--~v~~-~g---GH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~-- 223 (784)
.+++.+++.++- +-++.+.++ +... .. ++..++.|..-+.+++-..+ .++|.++. .|+.+++.+..|.
T Consensus 50 ~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al-~~~D~v~~--~yR~~~~~~~~G~~~ 126 (400)
T 2bfd_A 50 PHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL-DNTDLVFG--QAREAGVLMYRDYPL 126 (400)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTS-CTTSEEEC--CSCCHHHHHHTTCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhc-CCCCEEEe--cCcCHHHHHHcCCCH
Confidence 467766665543 222222233 2221 22 35568999988888876666 46898775 7999999999997
Q ss_pred hHHhHHHHhc------C-CCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHH
Q 003948 224 RSRMNTMRKT------S-GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM 296 (784)
Q Consensus 224 ~~~l~~~r~~------g-gl~g~~~~~e~~~~~~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAl 296 (784)
++.|.+|+.. | +.++|+...+.. ...++|++|+++|+|+|+|+|.++++++++|||++|||++++|.+||+|
T Consensus 127 ~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~-~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal 205 (400)
T 2bfd_A 127 ELFMAQCYGNISDLGKGRQMPVHYGCKERH-FVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF 205 (400)
T ss_dssp HHHHHHHHTCTTCTTTTCSCSSCCCBTTTT-BCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCCCCCcCCcccccC-ccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHH
Confidence 5667888764 3 356676543322 3456899999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhh
Q 003948 297 NNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376 (784)
Q Consensus 297 n~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r 376 (784)
|+|+.+++|+|+||+||++ ++.+.....
T Consensus 206 ~~A~~~~lpvi~vv~NN~~-~i~~~~~~~--------------------------------------------------- 233 (400)
T 2bfd_A 206 NFAATLECPIIFFCRNNGY-AISTPTSEQ--------------------------------------------------- 233 (400)
T ss_dssp HHHHHTTCCEEEEEEECSE-ETTEEGGGT---------------------------------------------------
T ss_pred HHHHHHCcCEEEEEECCce-eeeeccccc---------------------------------------------------
Confidence 9999999999999999974 322211000
Q ss_pred hccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEecCCCCCChh
Q 003948 377 GLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVTEKGKGYPPA 437 (784)
Q Consensus 377 ~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~--~~~~P~lI~v~T~kG~G~~~a 437 (784)
+-..+...++++|||.++ .|||||+++|.++++++.+. ..++|++|+++|.+-.|+++.
T Consensus 234 -~~~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~ 294 (400)
T 2bfd_A 234 -YRGDGIAARGPGYGIMSI-RVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTS 294 (400)
T ss_dssp -CSSSTTGGGTGGGTCEEE-EEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-
T ss_pred -CCCCCHHHHHHHcCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCC
Confidence 001122345999999987 89999999999999877641 147999999999887777654
No 29
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.89 E-value=1.3e-23 Score=234.30 Aligned_cols=284 Identities=13% Similarity=0.110 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh-hhhHH---hCCCCeeeccccHHHHHHHHHHHHhcCCeeEEEecHh
Q 003948 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-NYFQK---RFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSS 540 (784)
Q Consensus 465 ~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl-~~f~~---~~p~R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~ 540 (784)
++-.+|+++.+.. ...+++..-+-.. ++.+ +.|.+ ++..+++.+. +|++++++|.|+|+.|.||++++.++
T Consensus 23 ~~GneAva~~~~~---ag~~~v~~yPgtP-~t~i~~~l~~~~~~~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~~ 97 (395)
T 1yd7_A 23 IQGDEAIARAAIL---AGCRFYAGYPITP-ASEIFEAMALYMPLVDGVVIQME-DEIASIAAAIGASWAGAKAMTATSGP 97 (395)
T ss_dssp EEHHHHHHHHHHH---HTCCEEEECCBTT-TBCHHHHHHHHGGGGTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred eEHHHHHHHHHHH---cCCCEEEEEECcc-hHHHHHHHHHhhhhcCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCch
Confidence 4556677666554 3455666544433 2333 44444 5667899988 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEeeC-CCC-CCCCCCC-cCchhhHhHhccCC--CcEEEecCCHHHHHHHHHHHHH---
Q 003948 541 FLQRGYDQVVHDVDLQKLPVRFAMDR-AGL-VGADGPT-HCGAFDVTFMSCLP--NMVVMAPSDEAELMHMVATAAV--- 612 (784)
Q Consensus 541 Fl~ra~dQi~~~~a~~~lpV~~v~~~-~G~-~G~dG~T-Hq~~~dla~lr~iP--n~~V~~Psd~~E~~~~l~~A~~--- 612 (784)
++.+++|||.+ ++..++|++++... +|. .|....+ |++..+. .+...| ++.+++|++++|+.+++..|++
T Consensus 98 G~~~~~d~l~~-aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~-~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~ 175 (395)
T 1yd7_A 98 GFSLMQENIGY-AVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQA-IWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSE 175 (395)
T ss_dssp HHHHHTTTCC-----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHH-HhccCCCcceEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99899999854 67889998888743 332 2212222 3344443 344555 8999999999999999999985
Q ss_pred hCCCCeEEEcCCCC---CccccCCC---------------C--CCCCCc--cc--------cc-----------------
Q 003948 613 IDDRPSCFRFPRGN---GIGAVLPP---------------N--NKGTPL--EI--------GK----------------- 645 (784)
Q Consensus 613 ~~~~Pv~irl~r~~---~~~~~~p~---------------~--~~~~~~--~i--------gk----------------- 645 (784)
+.+.||+++++... ...+++|+ . +.++.. +. +.
T Consensus 176 ~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~~ 255 (395)
T 1yd7_A 176 KYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRP 255 (395)
T ss_dssp HHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC---------------------------------------------
T ss_pred HHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeEecccccccccCc
Confidence 45689999986320 00000000 0 001111 00 00
Q ss_pred -----------------------------eeEeeeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHH
Q 003948 646 -----------------------------GRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL 696 (784)
Q Consensus 646 -----------------------------~~vlreG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~ 696 (784)
.++.++|.|++||++|+++..|++|++.|+++|++++||++++++|||.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~~ 335 (395)
T 1yd7_A 256 RTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFEL 335 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHHH
Confidence 012235789999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCCCCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 003948 697 IRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 775 (784)
Q Consensus 697 i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll 775 (784)
|.++++++++|+|+|++. ||++++|.+.+... .++..++..+ | .-+++++|++++++++
T Consensus 336 i~~~~~~~~~vvvvEe~~-G~l~~~v~~~~~~~------~~~~~~gk~~-----g--------~~~~~~ei~~~i~~~~ 394 (395)
T 1yd7_A 336 IERIAERVDKLYVPEMNL-GQLYHLIKEGANGK------AEVKLISKIG-----G--------EVHTPMEIFEFIRREF 394 (395)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHhcCCEEEEEeCCc-hHHHHHHHHHhcCC------CCeEEEeccC-----C--------CcCCHHHHHHHHHHhh
Confidence 999999999999999997 99999998877541 1222333222 1 1268899998888754
No 30
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.89 E-value=9.5e-22 Score=219.22 Aligned_cols=203 Identities=18% Similarity=0.140 Sum_probs=151.1
Q ss_pred CCCCCCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCc--hHHhHHHHhc-CC-CCCC--C-CCCCCcccc-cC
Q 003948 180 GHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTMRKT-SG-LAGF--P-KREESVHDA-FG 251 (784)
Q Consensus 180 GH~gsslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~r~~-gg-l~g~--~-~~~e~~~~~-~g 251 (784)
++..++.|..-+.+++-..+ .++|.++. .|+.+++.+..|. .+.|..|.-. .+ ..|+ + +........ .+
T Consensus 103 ~~~~~~~GqEA~~vg~~~al-~~~D~v~~--~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~ 179 (407)
T 1qs0_A 103 SFYMQSLGEEAIGSGQALAL-NRTDMCFP--TYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTI 179 (407)
T ss_dssp SCCCCCTTTHHHHHHHHHHS-CTTSEEEC--CSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCC
T ss_pred ccCcCCCChHHHHHHHHHhc-CCCCEEEe--cccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCcccc
Confidence 45568999998888887666 47898884 8999988888886 4556565321 11 1111 1 110112222 35
Q ss_pred CcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 003948 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVG 331 (784)
Q Consensus 252 ~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~ 331 (784)
.|++|+++|+|+|+|+|.++++++++|||++|||++++|.+||+||+|+.+++|+++||+||++ .+.+...
T Consensus 180 ~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~-gi~~~~~-------- 250 (407)
T 1qs0_A 180 SGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQW-AISTFQA-------- 250 (407)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSE-ETTEEGG--------
T ss_pred ccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCc-ceeeccc--------
Confidence 8999999999999999999999999999999999999999999999999999999999999985 3211100
Q ss_pred hhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHH
Q 003948 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ 411 (784)
Q Consensus 332 ~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~ 411 (784)
.. .+ ..++...++++|||.++ .|||||++++.++++
T Consensus 251 ~~--------------------------~~-----------------~~~d~a~~a~a~G~~~~-~VdG~D~~av~~a~~ 286 (407)
T 1qs0_A 251 IA--------------------------GG-----------------ESTTFAGRGVGCGIASL-RVDGNDFVAVYAASR 286 (407)
T ss_dssp GG--------------------------TT-----------------TTCCSTHHHHHTTCEEE-EEETTCHHHHHHHHH
T ss_pred cc--------------------------cC-----------------CCCCHHHHHHHcCCeEE-EEcCCCHHHHHHHHH
Confidence 00 00 01122345899999987 799999999999988
Q ss_pred HhhcC--CCCCcEEEEEEecCCCCCChhh
Q 003948 412 RVKEM--PAPGPVLIHVVTEKGKGYPPAE 438 (784)
Q Consensus 412 ~ak~~--~~~~P~lI~v~T~kG~G~~~ae 438 (784)
++.+. ..++|++|+++|.|++|++.++
T Consensus 287 ~A~~~ar~~~gP~lIe~~t~R~~Ghs~~D 315 (407)
T 1qs0_A 287 WAAERARRGLGPSLIEWVTYRAGPHSTSD 315 (407)
T ss_dssp HHHHHHHTTSCCEEEEEECCCCSCSSTTC
T ss_pred HHHHHHHhcCCCEEEEEEeeccCCcCCCC
Confidence 77642 2579999999999999998775
No 31
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.71 E-value=9.3e-16 Score=191.22 Aligned_cols=252 Identities=15% Similarity=0.080 Sum_probs=176.4
Q ss_pred CeeeccccHHHHHHHHHHHHhcCCeeEEEecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC-CCCCCCCcCchhhHhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL-VGADGPTHCGAFDVTF 585 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~~P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~-~G~dG~THq~~~dla~ 585 (784)
+.++...+|.++++++.|+|+.|.|++++|.+..+..+.|.+ ..++..++|++++. +++|. .|. .++.+..|..+
T Consensus 55 ~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l-~~~ag~~~P~Vi~va~R~g~~~gl--si~~~hsd~~~ 131 (1231)
T 2c42_A 55 LTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNM-YKISGELLPGVFHVTARAIAAHAL--SIFGDHQDIYA 131 (1231)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHH-HHHHHTTCCCEEEEEECCCCSSSB--CCSCCSHHHHT
T ss_pred eEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHH-HHHhCCCCCEEEEECCCCccCCCC--cCCCchhhHHH
Confidence 799999999999999999999999999999888887888887 44556789988777 55553 121 22333334333
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCCC----CccccCCCC--------------------CCC
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN----GIGAVLPPN--------------------NKG 638 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~~----~~~~~~p~~--------------------~~~ 638 (784)
...+|+.|++|++++|+++++..|++ +.+.||+++++... ..++++|+. ..+
T Consensus 132 -ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~p~ 210 (1231)
T 2c42_A 132 -ARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMNPE 210 (1231)
T ss_dssp -TTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCCTT
T ss_pred -HhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccCCC
Confidence 44699999999999999999999865 46789999986521 111222210 000
Q ss_pred CCccccc------------------------------------------e-eEeeeCCcEEEEEechhHHHHHHHHHHHh
Q 003948 639 TPLEIGK------------------------------------------G-RILMEGDRVAILGYGSIVQQCVLAANMLK 675 (784)
Q Consensus 639 ~~~~igk------------------------------------------~-~vlreG~dvtIva~Gs~v~~aleAae~L~ 675 (784)
.++..|. . +.-.++.|++||+||++...+++|++.|+
T Consensus 211 ~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs~~~~~~eAv~~L~ 290 (1231)
T 2c42_A 211 HPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGSSCETIEEVINHLA 290 (1231)
T ss_dssp SCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECSTHHHHHHHHHHHHH
T ss_pred CceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCHHHHHHHHHHHHHH
Confidence 1111111 1 12246789999999999999999999999
Q ss_pred cCCCcEEEeeccccCCCcHHHHHHHh-ccCCeEEEEcCCCcCC-----cHHHHHHHHHhcCCCCCCcceEEeecCccccc
Q 003948 676 SQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGG-----FGSHVCHFLTLSGILDGPLKLRSMVLPDRYID 749 (784)
Q Consensus 676 ~~GI~v~VId~~slkPlD~e~i~~~~-~~~~~vVvvEe~~~gG-----~gs~V~~~l~~~g~~~~~~~~~~lg~~d~f~~ 749 (784)
++|++|+||++++++|||.+.|.+.+ ++.++|+|+|++..+| +...|...+.... ...++...+ +|+.
T Consensus 291 ~~G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~~~---~~~~~~~~g---r~gl 364 (1231)
T 2c42_A 291 AKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVERG---EAMPKILAG---RYGL 364 (1231)
T ss_dssp TTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHHHC---SCCCEEEEE---ECCG
T ss_pred hcCCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhhcc---CCCCeEEEE---EECC
Confidence 99999999999999999999999988 6779999999985333 4445555444321 011222111 2221
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHHhcC
Q 003948 750 HGSPADQLEESGLSSRHISATVLSLLGR 777 (784)
Q Consensus 750 ~g~~~elle~~gl~~~~I~~~i~~ll~~ 777 (784)
.| .-++++.|.+.+.++...
T Consensus 365 ~g--------~~~tp~~i~~~~~~l~~~ 384 (1231)
T 2c42_A 365 GS--------KEFSPAMVKSVYDNMSGA 384 (1231)
T ss_dssp GG--------CCCCHHHHHHHHHHHHTT
T ss_pred CC--------CCCCHHHHHHHHHHhhcC
Confidence 11 126899999988887654
No 32
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.56 E-value=9.5e-15 Score=171.37 Aligned_cols=215 Identities=17% Similarity=0.182 Sum_probs=136.9
Q ss_pred CCCcHHHHHHHHhhccCCCCcEEEeCCC-chHHHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHH
Q 003948 184 ANLGVVELTLALHRVFNTPDDKIIWDVG-HQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAG 262 (784)
Q Consensus 184 sslg~~el~vaL~~~~~~p~D~~i~s~G-H~~y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~A 262 (784)
..+....++-.|...+ .++|.|++|+| |+.+++.++..+.. . .-....+.|++|.++++|
T Consensus 369 ~~l~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~~~~~~~~~---------------~---~~~~~~~~g~~G~~l~~A 429 (603)
T 4feg_A 369 GPLQAYQVLRAVNKIA-EPDAIYSIDVGDINLNANRHLKLTPS---------------N---RHITSNLFATMGVGIPGA 429 (603)
T ss_dssp SBCCHHHHHHHHHHHC-CTTCEEEECSSHHHHHHHHHCCCCTT---------------C---EEECCCSSCCTTCHHHHH
T ss_pred CCcCHHHHHHHHHHhC-CCCCEEEECCchHHHHHHHhceeCCC---------------C---ceecCcccccccchhHHH
Confidence 3466666666665555 46789999999 66677655432210 0 011123568999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhh
Q 003948 263 LGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQA 342 (784)
Q Consensus 263 vG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~ 342 (784)
+|++++.+ +++|||++|||+++++ +++|++|+++++|+++||.||+.+.+
T Consensus 430 ~Gaala~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~------------------------ 479 (603)
T 4feg_A 430 IAAKLNYP----ERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGF------------------------ 479 (603)
T ss_dssp HHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHH------------------------
T ss_pred hhHHHhCC----CCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHH------------------------
Confidence 99999865 7899999999999865 78899999999999888888873211
Q ss_pred hhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhh--cCCCCC
Q 003948 343 STNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVK--EMPAPG 420 (784)
Q Consensus 343 ~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak--~~~~~~ 420 (784)
++..-+..... +.+...+-..+...++++||+.++ .|+ +.++|.+++++++ + .++
T Consensus 480 ------~~~~~~~~~~~------------~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~a~~~~--~~g 536 (603)
T 4feg_A 480 ------IKDEQEDTNQN------------DFIGVEFNDIDFSKIADGVHMQAF-RVN--KIEQLPDVFEQAKAIA--QHE 536 (603)
T ss_dssp ------HHHHHHHHCSS------------CCCSSBCCCCCHHHHHHHTTCEEE-EEC--BGGGHHHHHHHHHHHT--TTS
T ss_pred ------HHHHHHHhcCC------------CcccCcCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHHhc--CCC
Confidence 00000000000 000000112344567999999998 454 7789999999998 5 589
Q ss_pred cEEEEEEecCCCCCChhhhcccccCcccccccccccccCCCCchhhHHHHH
Q 003948 421 PVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYTQYF 471 (784)
Q Consensus 421 P~lI~v~T~kG~G~~~ae~~~~~~Hg~~~fd~~~g~~~~~~~~~~s~~~af 471 (784)
|++|||.|.+++.+++ +...+..|+..+++++..++...+.+...+++.+
T Consensus 537 P~lIev~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l 586 (603)
T 4feg_A 537 PVLIDAVITGDRPLPA-EKLRLDSAMSSAADIEAFKQRYEAQDLQPLSTYL 586 (603)
T ss_dssp CEEEEEECCCCCCCCT-TSCCCCTTTSCHHHHHHHHHHHTCTTCCCHHHHH
T ss_pred cEEEEEEeCCCCCCCc-ccchhhhhhhhHHHHHHHHhhCCcccCCchHHHH
Confidence 9999999987766654 3344556766555543332222222334455544
No 33
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.52 E-value=2.8e-14 Score=132.54 Aligned_cols=104 Identities=14% Similarity=0.249 Sum_probs=87.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcC
Q 003948 651 EGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSG 730 (784)
Q Consensus 651 eG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g 730 (784)
+|.|++||+||+++..|++|++.|+++|++++|+++++++|||.+.+.+++++++.++|+|++..||+++.|...+..
T Consensus 12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~~~-- 89 (118)
T 3ju3_A 12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYTGI-- 89 (118)
T ss_dssp SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHHCC--
T ss_pred CCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHcCC--
Confidence 678999999999999999999999999999999999999999999999999999999999999889999998765421
Q ss_pred CCCCCcceEEeecCccccc--CCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 003948 731 ILDGPLKLRSMVLPDRYID--HGSPADQLEESGLSSRHISATVLSLLG 776 (784)
Q Consensus 731 ~~~~~~~~~~lg~~d~f~~--~g~~~elle~~gl~~~~I~~~i~~ll~ 776 (784)
. +..++. .| .-+++++|.+.++++++
T Consensus 90 ----~--------~~~~i~~~~G--------~~~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 90 ----D--------IKNKILKYNG--------RHMTEDEILKSAKEILN 117 (118)
T ss_dssp ----C--------CCCCCCCBTT--------BCCCHHHHHHHHHHHHH
T ss_pred ----C--------ceeEEeeeCC--------eeCCHHHHHHHHHHHhh
Confidence 0 011111 12 12799999999999873
No 34
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.41 E-value=6.6e-13 Score=154.42 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=120.7
Q ss_pred CCcHHHHHHHHhhccCCCCcEEEeCCCchH-HHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHH
Q 003948 185 NLGVVELTLALHRVFNTPDDKIIWDVGHQA-YVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263 (784)
Q Consensus 185 slg~~el~vaL~~~~~~p~D~~i~s~GH~~-y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~Av 263 (784)
.+....++-.|...+ .+++.++.|.|+.. +++..+..+. | ..-....|.|++|+++|+|+
T Consensus 369 ~~~~~~~~~~l~~~l-~~~~iv~~d~G~~~~~~~~~~~~~~---------------~---~~~~~~~g~g~~G~~l~~Ai 429 (563)
T 2uz1_A 369 ALHPFHASQVIAKHV-DAGVTVVADGALTYLWLSEVMSRVK---------------P---GGFLCHGYLGSMGVGFGTAL 429 (563)
T ss_dssp SCCHHHHHHHHHTTC-STTEEEEECSSHHHHHHHHHHTTSC---------------C---SEEECCCTTCCTTTHHHHHH
T ss_pred CcCHHHHHHHHHHhC-CCCcEEEEcCchHHHHHHHhccccC---------------C---CeEECCCCCccccChHHHHH
Confidence 466666666776665 35788889999844 5665544321 1 11233346899999999999
Q ss_pred HHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhh
Q 003948 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQAS 343 (784)
Q Consensus 264 G~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~ 343 (784)
|+|+|.+ +++++|||++|||+++++ +++|++|.++++|+++||.||+...+
T Consensus 430 Gaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~------------------------- 480 (563)
T 2uz1_A 430 GAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGA------------------------- 480 (563)
T ss_dssp HHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHH-------------------------
T ss_pred HHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchH-------------------------
Confidence 9999985 458899999999999865 67999999999888777766653221
Q ss_pred hhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEE
Q 003948 344 TNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVL 423 (784)
Q Consensus 344 ~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~l 423 (784)
++..-+.. .+. + +....++-..+...++++||+.++. + ++.++|.++++++.+ .++|++
T Consensus 481 -----~~~~~~~~---~~~-------~-~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~~l~~al~~a~~--~~gp~l 539 (563)
T 2uz1_A 481 -----TLHFQQLA---VGP-------N-RVTGTRLENGSYHGVAAAFGADGYH-V--DSVESFSAALAQALA--HNRPAC 539 (563)
T ss_dssp -----HHHHHHHH---TCT-------T-CCCSCBCCCCCHHHHHHHTTCEEEE-E--CSHHHHHHHHHHHHH--SSSCEE
T ss_pred -----HHHHHHHh---cCC-------C-cccCCcCCCCCHHHHHHHcCCeEEE-e--CCHHHHHHHHHHHHH--CCCCEE
Confidence 00000000 000 0 0000011124556779999999884 4 579999999999987 589999
Q ss_pred EEEEecCCC
Q 003948 424 IHVVTEKGK 432 (784)
Q Consensus 424 I~v~T~kG~ 432 (784)
||+.|.+..
T Consensus 540 iev~~~~~~ 548 (563)
T 2uz1_A 540 INVAVALDP 548 (563)
T ss_dssp EEEECCSCC
T ss_pred EEEEecccc
Confidence 999998533
No 35
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.34 E-value=5.5e-12 Score=146.85 Aligned_cols=175 Identities=15% Similarity=0.220 Sum_probs=117.9
Q ss_pred CcHHHHHHHHhhccCCCCcEEEeCCC-chHHHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHH
Q 003948 186 LGVVELTLALHRVFNTPDDKIIWDVG-HQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLG 264 (784)
Q Consensus 186 lg~~el~vaL~~~~~~p~D~~i~s~G-H~~y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG 264 (784)
+....++-.|...+ .+++.++.|.| |+.+....+..+ .|. .-....|.|++|.++|+|+|
T Consensus 371 l~~~~v~~~l~~~l-~~~~iv~~d~G~~~~~~~~~~~~~---------------~~~---~~~~~~g~g~mG~~l~~AiG 431 (566)
T 1ozh_A 371 LHPLRIVRAMQDIV-NSDVTLTVDMGSFHIWIARYLYTF---------------RAR---QVMISNGQQTMGVALPWAIG 431 (566)
T ss_dssp BCHHHHHHHHHHHC-CTTEEEEECSSHHHHHHHHTGGGC---------------CCS---EEECCCTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEEcCcHHHHHHHHhcccC---------------CCC---eEEeCCCcccccchHHHHHH
Confidence 66677777776666 34677888888 433443222110 111 11223368999999999999
Q ss_pred HHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhh
Q 003948 265 MAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQAST 344 (784)
Q Consensus 265 ~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~ 344 (784)
+|+|.+ +++|||++|||++++ .+++|++|.++++|+++||.||+...+
T Consensus 432 aala~~----~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~-------------------------- 479 (566)
T 1ozh_A 432 AWLVNP----ERKVVSVSGDGGFLQ--SSMELETAVRLKANVLHLIWVDNGYNM-------------------------- 479 (566)
T ss_dssp HHHHST----TSEEEEEEEHHHHHH--HTTHHHHHHHHTCCEEEEEEECSBCHH--------------------------
T ss_pred HHHhCC----CCCEEEEEcChHHhc--cHHHHHHHHHhCCCcEEEEEECCchhH--------------------------
Confidence 999965 789999999999985 468899999999998888777763221
Q ss_pred hHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEE
Q 003948 345 NFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLI 424 (784)
Q Consensus 345 ~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI 424 (784)
++.. +.... -..+...+-..+...++++||+.++ .++ +.+++.++++++.+ .++|++|
T Consensus 480 ----~~~~------------~~~~~-~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~--~~gp~li 537 (566)
T 1ozh_A 480 ----VAIQ------------EEKKY-QRLSGVEFGPMDFKAYAESFGAKGF-AVE--SAEALEPTLRAAMD--VDGPAVV 537 (566)
T ss_dssp ----HHHH------------HHHHH-SSCCSCBCCCCCHHHHHHTTTSEEE-ECC--SGGGHHHHHHHHHH--SSSCEEE
T ss_pred ----HHHH------------HHHhc-CCCccCcCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHh--CCCCEEE
Confidence 0000 00000 0000011222455678999999987 454 68899999999886 5799999
Q ss_pred EEEecCCCC
Q 003948 425 HVVTEKGKG 433 (784)
Q Consensus 425 ~v~T~kG~G 433 (784)
|+.|.+...
T Consensus 538 ev~~~~~~~ 546 (566)
T 1ozh_A 538 AIPVDYRDN 546 (566)
T ss_dssp EEEBCCTTH
T ss_pred EEEeCCCcC
Confidence 999998764
No 36
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.30 E-value=2.5e-12 Score=152.55 Aligned_cols=132 Identities=20% Similarity=0.314 Sum_probs=95.6
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+|+|. ++++|||++|||++++ .+++|++|.++++|+++||.||+...+
T Consensus 511 ~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~--~~~eL~ta~~~~l~v~ivV~NN~~~g~------------ 572 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNM--TLTELSSAVQAGTPVKILILNNEEQGM------------ 572 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHH--HGGGHHHHHHHTCCCEEEEEECSSCHH------------
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhc--cHHHHHHHHHhCCCeEEEEEeCCCchh------------
Confidence 5689999999999999996 4889999999999985 578899999999888777766653211
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh-hhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
++.. ++... .+.+. ..+-.++...++++||+.++. | ++.++|.++
T Consensus 573 ------------------~~~~------------~~~~~-~~~~~~~~~~~~d~~~la~a~G~~~~~-v--~~~~el~~a 618 (677)
T 1t9b_A 573 ------------------VTQW------------QSLFY-EHRYSHTHQLNPDFIKLAEAMGLKGLR-V--KKQEELDAK 618 (677)
T ss_dssp ------------------HHHH------------HHHHS-TTCCCSCCCCCCCHHHHHHHTTCEEEE-E--CSHHHHHHH
T ss_pred ------------------hhhh------------hhhhc-CCCcccCcCCCCCHHHHHHHcCCeEEE-E--CCHHHHHHH
Confidence 0000 00000 00000 001124556789999999884 4 689999999
Q ss_pred HHHhhcCCCCCcEEEEEEecCCCCCCh
Q 003948 410 FQRVKEMPAPGPVLIHVVTEKGKGYPP 436 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~kG~G~~~ 436 (784)
++++.+ .++|++|||.|.++....+
T Consensus 619 l~~a~~--~~gp~lIev~~~~~~~~~p 643 (677)
T 1t9b_A 619 LKEFVS--TKGPVLLEVEVDKKVPVLP 643 (677)
T ss_dssp HHHHHH--CSSCEEEEEEBCSSCCCSS
T ss_pred HHHHHH--CCCcEEEEEEecCCcccCC
Confidence 999987 5799999999999886544
No 37
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.28 E-value=3.9e-12 Score=148.76 Aligned_cols=141 Identities=20% Similarity=0.287 Sum_probs=95.1
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+|+|.+ +++|||++|||+++. .+++|++|+++++|+++||.||+..++
T Consensus 424 ~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~NN~~~~~------------ 485 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVANP----DAIVVDIDGDGSFIM--NVQELATIRVENLPVKVLLLNNQHLGM------------ 485 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHH--TTTHHHHHHHTTCCEEEEEEECSBCHH------------
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEccchhhc--cHHHHHHHHHhCCCcEEEEEECCcchH------------
Confidence 56999999999999999975 789999999999985 578999999999997777766653221
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
...+.+......+ ....++.+. ....-..+...++++||+.++ .| ++.++|.+++
T Consensus 486 ---~~~~~~~~~~~~~---------~~~~~~~p~----------~~~~~~~d~~~~a~a~G~~~~-~v--~~~~el~~al 540 (590)
T 1ybh_A 486 ---VMQWEDRFYKANR---------AHTFLGDPA----------QEDEIFPNMLLFAAACGIPAA-RV--TKKADLREAI 540 (590)
T ss_dssp ---HHHHHHHHSTTCC---------CSCBCSCGG----------GTTSCSSCHHHHHHHTTCCEE-EE--CBHHHHHHHH
T ss_pred ---HHHHHHHhcCCcc---------ccccccccc----------cccCCCCCHHHHHHHcCCeEE-Ee--CCHHHHHHHH
Confidence 0000000000000 000000000 000002345667999999988 45 5799999999
Q ss_pred HHhhcCCCCCcEEEEEEecCCCCCCh
Q 003948 411 QRVKEMPAPGPVLIHVVTEKGKGYPP 436 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG~G~~~ 436 (784)
+++++ .++|++|||.|.++....+
T Consensus 541 ~~a~~--~~gp~liev~~~~~~~~~p 564 (590)
T 1ybh_A 541 QTMLD--TPGPYLLDVICPHQEHVLP 564 (590)
T ss_dssp HHHHH--SSSCEEEEEECCTTCCCCS
T ss_pred HHHHh--CCCCEEEEEEecCCcccCC
Confidence 99987 4799999999999887543
No 38
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.25 E-value=6.9e-12 Score=146.20 Aligned_cols=126 Identities=18% Similarity=0.254 Sum_probs=92.3
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
|.|++|+++|+|+|+|+|.+ +++|||++|||+++++ +++|++|.++++|+++||.||+..++
T Consensus 434 g~g~mG~~l~~AiGaa~a~~----~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~------------ 495 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMARP----DQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGL------------ 495 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHH------------
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchh------------
Confidence 67999999999999999975 7899999999999854 78999999999887766666653221
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHh--hhccCCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA--RGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~--r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
...+.. .... ..+. ..+-..+...++++||+.++. | ++.++|.+
T Consensus 496 ---~~~~~~---------------------------~~~~-~~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~~l~~ 541 (573)
T 2iht_A 496 ---IELYQN---------------------------IGHH-RSHDPAVKFGGVDFVALAEANGVDATR-A--TNREELLA 541 (573)
T ss_dssp ---HHHHHH---------------------------HHHS-SCCGGGTBCCCCCHHHHHHHTTCEEEE-C--CSHHHHHH
T ss_pred ---hHHHHH---------------------------HhcC-CCcCccccCCCCCHHHHHHHcCCeEEE-e--CCHHHHHH
Confidence 000000 0000 0000 112234566789999999874 5 58899999
Q ss_pred HHHHhhcCCCCCcEEEEEEecC
Q 003948 409 IFQRVKEMPAPGPVLIHVVTEK 430 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~k 430 (784)
+++++++ .++|++||+.|.+
T Consensus 542 al~~a~~--~~gp~liev~~~~ 561 (573)
T 2iht_A 542 ALRKGAE--LGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHT--SSSCEEEEEEBCC
T ss_pred HHHHHHh--CCCCEEEEEECCC
Confidence 9999986 5899999999998
No 39
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.23 E-value=7.1e-12 Score=144.58 Aligned_cols=127 Identities=24% Similarity=0.308 Sum_probs=91.1
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
| |++|+++|+|+|+|+|.+ +++|||++|||+++.+ +|+|++|.++++|+++||.||+...+
T Consensus 400 g-g~~G~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~------------ 460 (528)
T 1q6z_A 400 A-GGLGFALPAAIGVQLAEP----ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGA------------ 460 (528)
T ss_dssp T-CCTTSHHHHHHHHHHHCT----TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHH------------
T ss_pred C-ccccchHHHHHHHHHhCC----CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchH------------
Confidence 5 999999999999999964 6889999999999965 79999999999998888877763221
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.+.+.+.... +.. ...++-..+...++++||+.++ .++ +.+++.+++
T Consensus 461 ---~~~~~~~~~~--------------~~~-------------~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al 507 (528)
T 1q6z_A 461 ---LRWFAGVLEA--------------ENV-------------PGLDVPGIDFRALAKGYGVQAL-KAD--NLEQLKGSL 507 (528)
T ss_dssp ---HHHHHHHHTC--------------CSC-------------CSCBCCCCCHHHHHHHHTCEEE-EES--SHHHHHHHH
T ss_pred ---hHHHHHHhcC--------------CCc-------------ccCCCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHH
Confidence 0000000000 000 0001112355677999999987 565 568999999
Q ss_pred HHhhcCCCCCcEEEEEEecCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG 431 (784)
+++++ .++|++||+.|.+.
T Consensus 508 ~~a~~--~~gp~liev~~~~~ 526 (528)
T 1q6z_A 508 QEALS--AKGPVLIEVSTVSP 526 (528)
T ss_dssp HHHHT--CSSCEEEEEEBCC-
T ss_pred HHHHH--CCCcEEEEEEecCC
Confidence 99986 58999999999753
No 40
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.21 E-value=7.1e-12 Score=146.56 Aligned_cols=180 Identities=17% Similarity=0.221 Sum_probs=117.7
Q ss_pred CCcHHHHHHHHhhccCCCCcEEEeCCCchH-HHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHH
Q 003948 185 NLGVVELTLALHRVFNTPDDKIIWDVGHQA-YVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263 (784)
Q Consensus 185 slg~~el~vaL~~~~~~p~D~~i~s~GH~~-y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~Av 263 (784)
.+....++-.|...+ .+++.++.+.|-.. +....+. ++.+. .-....|.|++|+++|+|+
T Consensus 374 ~l~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~-----------------~~~~~-~~~~~~g~g~mG~~l~~Ai 434 (589)
T 2pgn_A 374 PASMFRAMAEVRKVQ-RPEDIIVTDIGNHTLPMFGGAI-----------------LQRPR-RLVTSMAEGILGCGFPMAL 434 (589)
T ss_dssp SCCHHHHHHHHHHTC-CTTCEEEECSSTTHHHHHHHCC-----------------CSSTT-CEESCTTTCCTTCHHHHHH
T ss_pred CcCHHHHHHHHHHhC-CCCCEEEEcCchHHHHHHHhcc-----------------cCCCC-cEECCCCcchhhhHHHHHH
Confidence 466666666665555 34677788887643 2221111 00000 1122236799999999999
Q ss_pred HHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhh
Q 003948 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQAS 343 (784)
Q Consensus 264 G~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~ 343 (784)
|+|+|.+ +++|||++|||+++.+ +++|++|.++++|+++||.||+...+
T Consensus 435 Gaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~------------------------- 483 (589)
T 2pgn_A 435 GAQLAEP----NSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGA------------------------- 483 (589)
T ss_dssp HHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHH-------------------------
T ss_pred HHHHhCC----CCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCccc-------------------------
Confidence 9999964 7899999999999865 69999999999897777777763211
Q ss_pred hhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEE
Q 003948 344 TNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVL 423 (784)
Q Consensus 344 ~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~l 423 (784)
++.. +..... ..+...+-..+...++++||+.++ .|+ +.++|.++++++.+ .++|++
T Consensus 484 -----~~~~------------~~~~~~-~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~--~~gp~l 540 (589)
T 2pgn_A 484 -----NWTL------------MNHQFG-QNNWTEFMNPDWVGIAKAFGAYGE-SVR--ETGDIAGALQRAID--SGKPAL 540 (589)
T ss_dssp -----HHHH------------HHHHHS-SCCSCBCCCCCHHHHHHHHTCEEE-ECT--TTCCHHHHHHHHHH--HCSCEE
T ss_pred -----chHH------------HHhhcC-CCccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHh--CCCCEE
Confidence 0000 000000 000011223456678999999987 454 56788899998876 479999
Q ss_pred EEEEecCCCCCChh
Q 003948 424 IHVVTEKGKGYPPA 437 (784)
Q Consensus 424 I~v~T~kG~G~~~a 437 (784)
|||.|.++.++.+.
T Consensus 541 iev~~~~~~~~~~~ 554 (589)
T 2pgn_A 541 IEIPVSKTQGLASD 554 (589)
T ss_dssp EEEECCSSSSTTTC
T ss_pred EEEEecCCCCcCcc
Confidence 99999998877653
No 41
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.20 E-value=1.4e-11 Score=143.34 Aligned_cols=177 Identities=17% Similarity=0.176 Sum_probs=115.1
Q ss_pred CCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHHH
Q 003948 185 NLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLG 264 (784)
Q Consensus 185 slg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~AvG 264 (784)
.+....++-.|...+ .+++.++.|.|...+.. ..++ ++.+. .-....+.|.+|+++|+|+|
T Consensus 364 ~~~~~~~~~~l~~~l-~~~~iv~~d~G~~~~~~----------~~~~-------~~~~~-~~~~~~~~g~mG~~l~~A~G 424 (563)
T 2vk8_A 364 PLKQEWMWNQLGNFL-QEGDVVIAETGTSAFGI----------NQTT-------FPNNT-YGISQVLWGSIGFTTGATLG 424 (563)
T ss_dssp BCCHHHHHHHHTTTC-CTTCEEEECTTHHHHHG----------GGSC-------CCSSC-EEECCTTTCCTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHhC-CCCCEEEECCchHHHHH----------hhcC-------cCCCC-eEEcccchhhhhhHHHHHHH
Confidence 355555555554444 34678888888533210 0111 11110 11122367999999999999
Q ss_pred HHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhh
Q 003948 265 MAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQAST 344 (784)
Q Consensus 265 ~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~ 344 (784)
+|+|.+.++++++|||++|||++++ .+++|++|.++++|+++||.||+...+-... .|..
T Consensus 425 aala~~~~~~~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~-~~~~----------------- 484 (563)
T 2vk8_A 425 AAFAAEEIDPKKRVILFIGDGSLQL--TVQEISTMIRWGLKPYLFVLNNDGYTIQKLI-HGPK----------------- 484 (563)
T ss_dssp HHHHHHHHCTTCCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHH-SCTT-----------------
T ss_pred HHHhCcccCCCCCEEEEEcchHhhc--cHHHHHHHHHcCCCcEEEEEECCcchhhhhh-hCCC-----------------
Confidence 9999998888899999999999985 5789999999998877777666532210000 0000
Q ss_pred hHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCe---EEeecCCCCHHHHHHHHH-HhhcCCCCC
Q 003948 345 NFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY---YIGPVDGHNVEDLVTIFQ-RVKEMPAPG 420 (784)
Q Consensus 345 ~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~---~i~~vDGhd~~~l~~al~-~ak~~~~~~ 420 (784)
. .+ .++-..+...++++||+. ++ .|+ +.++|.++++ ++.+. .++
T Consensus 485 --------------------~-------~~-~~~~~~d~~~~a~a~G~~~~~~~-~v~--~~~el~~al~~~a~~~-~~~ 532 (563)
T 2vk8_A 485 --------------------A-------QY-NEIQGWDHLSLLPTFGAKDYETH-RVA--TTGEWDKLTQDKSFND-NSK 532 (563)
T ss_dssp --------------------C-------GG-GCCCCCCGGGHHHHTTCSSEEEE-EEC--BHHHHHHHHTCTTTTS-CSS
T ss_pred --------------------C-------Cc-ccCCCCCHHHHHHHhCCCCCcEE-Eec--CHHHHHHHHHHHHHhC-CCC
Confidence 0 00 111224566789999998 65 454 6899999998 77652 347
Q ss_pred cEEEEEEecCCC
Q 003948 421 PVLIHVVTEKGK 432 (784)
Q Consensus 421 P~lI~v~T~kG~ 432 (784)
|++|+++|.+..
T Consensus 533 p~liev~~~~~~ 544 (563)
T 2vk8_A 533 IRMIEVMLPVFD 544 (563)
T ss_dssp EEEEEEECCTTC
T ss_pred cEEEEEEeCccc
Confidence 999999998654
No 42
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.18 E-value=2e-11 Score=143.53 Aligned_cols=143 Identities=21% Similarity=0.223 Sum_probs=91.8
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|+++|+|+|+|+|.+ +++|||++|||+++. .+++|++|+++++|+++||.||+..++-+
T Consensus 440 ~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~NN~~~~~~~---------- 503 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAADP----KRNVVAISGDFDFQF--LIEELAVGAQFNIPYIHVLVNNAYLGLIR---------- 503 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHCT----TCEEEEEEEHHHHHH--TGGGHHHHHHTTCCCEEEEEECSBCHHHH----------
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEcchhhhC--CHHHHHHHHHhCCCeEEEEEECCcchHHH----------
Confidence 56999999999999999974 789999999999985 47899999999999877776665322100
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.+.+..... .+ . ......... .-......+...++++||+.++. | ++.++|.+++
T Consensus 504 -----~~~~~~~~~----~~-------~--~~~~~~~~~----~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al 558 (616)
T 2pan_A 504 -----QSQRAFDMD----YC-------V--QLAFENINS----SEVNGYGVDHVKVAEGLGCKAIR-V--FKPEDIAPAF 558 (616)
T ss_dssp -----HHGGGGTCC----CS-------C--BCCCCCTTC----GGGTTCCCCHHHHHHHTTCEEEE-E--CSGGGHHHHH
T ss_pred -----HHHHHhcCC----cc-------c--ccccccccc----ccCCCCCCCHHHHHHHcCCeEEE-E--CCHHHHHHHH
Confidence 000000000 00 0 000000000 00000013445679999999984 5 4688899888
Q ss_pred HHhhcC--CCCCcEEEEEEecCCCCC
Q 003948 411 QRVKEM--PAPGPVLIHVVTEKGKGY 434 (784)
Q Consensus 411 ~~ak~~--~~~~P~lI~v~T~kG~G~ 434 (784)
+++.+. ..++|++|||.|.++.-.
T Consensus 559 ~~a~~~~~~~~gp~lIev~~~~~~~~ 584 (616)
T 2pan_A 559 EQAKALMAQYRVPVVVEVILERVTNI 584 (616)
T ss_dssp HHHHHHHHHHCSCEEEEEEBCSCCCC
T ss_pred HHHHhhcccCCCcEEEEEEecccccC
Confidence 887640 036899999999998743
No 43
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.18 E-value=2.1e-11 Score=141.30 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=92.1
Q ss_pred cCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCC
Q 003948 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (784)
Q Consensus 250 ~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~ 329 (784)
.+.|++|+++|+|+|+|+|.+ +++|||++|||+++ +.+++|++|.++++|+++||.||+...+..... |..
T Consensus 405 ~~~g~mG~~l~~A~G~a~a~~----~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~-~~~-- 475 (552)
T 1ovm_A 405 PLWGSIGYTLAAAFGAQTACP----NRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAIH-GAE-- 475 (552)
T ss_dssp TTTCCTTHHHHHHHHHHHHCT----TSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHS-CTT--
T ss_pred hhhHhhhhHHHHHHHHHHhCC----CCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCCeEEEeec-cCC--
Confidence 368999999999999999965 78999999999998 568899999999988777766665322100000 000
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCC----eEEeecCCCCHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGL----YYIGPVDGHNVED 405 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~----~~i~~vDGhd~~~ 405 (784)
. .+ .++-..+...++++||+ .++ .+ ++.++
T Consensus 476 -----------------------------------~-------~~-~~~~~~d~~~~a~a~G~~~~~~~~-~v--~~~~~ 509 (552)
T 1ovm_A 476 -----------------------------------Q-------RY-NDIALWNWTHIPQALSLDPQSECW-RV--SEAEQ 509 (552)
T ss_dssp -----------------------------------C-------GG-GCCCCCCGGGSTTTSCSSCCEEEE-EE--CBHHH
T ss_pred -----------------------------------C-------Cc-ccCCCCCHHHHHHHhCCCcCCCEE-Ee--CCHHH
Confidence 0 00 11123456678999999 776 44 47899
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEecCCC
Q 003948 406 LVTIFQRVKEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 406 l~~al~~ak~~~~~~P~lI~v~T~kG~ 432 (784)
|.++++++++ .++|++||+.|.+..
T Consensus 510 l~~al~~a~~--~~gp~liev~~~~~~ 534 (552)
T 1ovm_A 510 LADVLEKVAH--HERLSLIEVMLPKAD 534 (552)
T ss_dssp HHHHHHHHTT--CSSEEEEEEECCTTC
T ss_pred HHHHHHHHHh--CCCCEEEEEEcCccc
Confidence 9999999876 578999999998644
No 44
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.18 E-value=2.9e-11 Score=141.46 Aligned_cols=131 Identities=17% Similarity=0.212 Sum_probs=92.8
Q ss_pred cCCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCC
Q 003948 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (784)
Q Consensus 250 ~g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~ 329 (784)
.+.|.+|+++|+|+|+|+|.+ +++|||++|||+++++ +++|++|.++++|+++||.||+...+-...+...
T Consensus 410 ~~~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~--- 480 (590)
T 1v5e_A 410 PLFATMGIAIPGGLGAKNTYP----DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDT--- 480 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSS---
T ss_pred CCCCcccChHHHHHHHHHhCC----CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHh---
Confidence 367999999999999999964 7899999999999865 6999999999988777776665323211111000
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
+ | .+ +..++-..+...++++||+.++ .|+ +.++|.++
T Consensus 481 -~--------------~----------------------~~---~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~a 517 (590)
T 1v5e_A 481 -N--------------K----------------------NL---FGVDFTDVDYAKIAEAQGAKGF-TVS--RIEDMDRV 517 (590)
T ss_dssp -C--------------C----------------------SC---CCCCCCCCCHHHHHHHTTSEEE-EEC--BHHHHHHH
T ss_pred -c--------------C----------------------CC---ccccCCCCCHHHHHHHcCCEEE-EEC--CHHHHHHH
Confidence 0 0 00 0000112344566999999987 454 78999999
Q ss_pred HHHhhcC-CCCCcEEEEEEecCCC
Q 003948 410 FQRVKEM-PAPGPVLIHVVTEKGK 432 (784)
Q Consensus 410 l~~ak~~-~~~~P~lI~v~T~kG~ 432 (784)
++++.+. ..++|++||+.|.++.
T Consensus 518 l~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 518 MAEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSCC
T ss_pred HHHHHHhcCCCCCEEEEEEecccc
Confidence 9988752 0178999999999876
No 45
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.18 E-value=2.5e-11 Score=140.80 Aligned_cols=179 Identities=17% Similarity=0.223 Sum_probs=113.8
Q ss_pred CCCcHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHhCchHHhHHHHhcCCCCCCCCCCCCcccccCCcccchhHHHHH
Q 003948 184 ANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263 (784)
Q Consensus 184 sslg~~el~vaL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~ggl~g~~~~~e~~~~~~g~G~~G~~ls~Av 263 (784)
..+....+.-.|...+ .+++.|+.|.|-...- ..+... ++.+. .-....+.|++|.++|+|+
T Consensus 355 ~~~~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~------------~~~~~~----~~~~~-~~~~~~~~g~mG~~l~~Ai 416 (549)
T 3eya_A 355 KAIHPQYLAQQISHFA-ADDAIFTCDVGTPTVW------------AARYLK----MNGKR-RLLGSFNHGSMANAMPQAL 416 (549)
T ss_dssp SCBCHHHHHHHHHHHS-CTTCEEEECTTHHHHH------------HHHHCC----CCSSC-EEECCTTTCCTTCHHHHHH
T ss_pred CCcCHHHHHHHHHhhC-CCCCEEEEcCcHHHHH------------HHHhCc----cCCCC-cEEeCCCCchhhhHHHHHH
Confidence 3466666666665554 4578889998843210 001010 00000 1112236789999999999
Q ss_pred HHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhh
Q 003948 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQAS 343 (784)
Q Consensus 264 G~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~ 343 (784)
|+|+|.+ +++|||++|||+++ +.+++|++|.++++|+++||.||+...+-+..+.
T Consensus 417 Gaala~~----~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~------------------- 471 (549)
T 3eya_A 417 GAQATEP----ERQVVAMCGDGGFS--MLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMK------------------- 471 (549)
T ss_dssp HHHHHST----TSCEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCCCC------------------------
T ss_pred HHHHhCC----CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHH-------------------
Confidence 9999875 78999999999997 4578999999999887766666652221000000
Q ss_pred hhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEE
Q 003948 344 TNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVL 423 (784)
Q Consensus 344 ~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~l 423 (784)
. .........+-.++...++++||+.++. + ++.++|.++++++++ .++|++
T Consensus 472 -----------------------~-~~~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~~l~~al~~a~~--~~gp~l 522 (549)
T 3eya_A 472 -----------------------A-GGYLTDGTELHDTNFARIAEACGITGIR-V--EKASEVDEALQRAFS--IDGPVL 522 (549)
T ss_dssp -------------------------------CCBCCCCCHHHHHHHTTSEEEE-E--CSGGGHHHHHHHHHH--SSSCEE
T ss_pred -----------------------h-cCCCCcCCcCCCCCHHHHHHHcCCcEEE-e--CCHHHHHHHHHHHHh--CCCCEE
Confidence 0 0000011112234556779999999874 4 688899999999987 589999
Q ss_pred EEEEecCCCCC
Q 003948 424 IHVVTEKGKGY 434 (784)
Q Consensus 424 I~v~T~kG~G~ 434 (784)
|||.|.+....
T Consensus 523 iev~~~~~~~~ 533 (549)
T 3eya_A 523 VDVVVAKEELA 533 (549)
T ss_dssp EEEEBCCCCSC
T ss_pred EEEEecccccc
Confidence 99999876543
No 46
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.15 E-value=2.9e-11 Score=140.66 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=92.0
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|+++|+|+|+|+|.+ +++|||++|||++++ .+++|++|.++++|+++||.||+...+....++
T Consensus 407 ~~g~mG~~l~~A~G~ala~~----~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~------ 474 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGSQ----DRQHVVMVGDGSFQL--TAQEVAQMVRYELPVIIFLINNRGYVIEIAIHD------ 474 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTCT----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSC------
T ss_pred cccchhhHHHHHHHHHHhCC----CCcEEEEEcchHHHh--hHHHHHHHHHhCCCcEEEEEECCcceEEEeecc------
Confidence 57899999999999999864 789999999999985 578899999999886666655543222110000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCC-----eEEeecCCCCHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGL-----YYIGPVDGHNVED 405 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~-----~~i~~vDGhd~~~ 405 (784)
. .| .+.-..+...++++||+ .++. | ++.++
T Consensus 475 -------------~----------------------------~~-~~~~~~d~~~~a~a~G~~~~~~~~~~-v--~~~~e 509 (566)
T 2vbi_A 475 -------------G----------------------------PY-NYIKNWDYAGLMEVFNAGEGHGLGLK-A--TTPKE 509 (566)
T ss_dssp -------------C----------------------------GG-GCCCCCCTTTHHHHHHTTTCCCEEEE-E--CSHHH
T ss_pred -------------C----------------------------Cc-cCCCCCCHHHHHHHcCCCCCCccEEE-e--CCHHH
Confidence 0 00 01112455677999999 8874 4 47999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEecCCCC
Q 003948 406 LVTIFQRVKEMPAPGPVLIHVVTEKGKG 433 (784)
Q Consensus 406 l~~al~~ak~~~~~~P~lI~v~T~kG~G 433 (784)
|.++++++.+. .++|++|||.|.+..-
T Consensus 510 l~~al~~a~~~-~~gp~liev~~~~~~~ 536 (566)
T 2vbi_A 510 LTEAIARAKAN-TRGPTLIECQIDRTDC 536 (566)
T ss_dssp HHHHHHHHHHC-CSSCEEEEEECCTTCC
T ss_pred HHHHHHHHHhc-CCCcEEEEEEeCcccC
Confidence 99999999862 2799999999998764
No 47
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.12 E-value=5.9e-11 Score=138.22 Aligned_cols=125 Identities=19% Similarity=0.254 Sum_probs=90.4
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|+++|+|+|+|+|.+ +++|||++|||++++ .+++|++|.++++|+++||.||+...+-... .+..
T Consensus 423 ~~g~mG~~l~~A~Gaala~~----~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~-~~~~--- 492 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIADK----ESRHLLFIGDGSLQL--TVQELGLSIREKLNPICFIINNDGYTVEREI-HGPT--- 492 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHH-SCTT---
T ss_pred cchhhhhhHHHHHHHHHhCC----CCcEEEEEcchhhhc--CHHHHHHHHHcCCCCEEEEEECCchHHHHHH-hccC---
Confidence 67999999999999999964 789999999999985 5788999999998877777666532210000 0000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCe-----EEeecCCCCHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY-----YIGPVDGHNVED 405 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~-----~i~~vDGhd~~~ 405 (784)
..+ .++-..+...++++||+. ++ .| ++.++
T Consensus 493 -----------------------------------------~~~-~~~~~~d~~~~a~a~G~~~~~~~~~-~v--~~~~e 527 (570)
T 2vbf_A 493 -----------------------------------------QSY-NDIPMWNYSKLPETFGATEDRVVSK-IV--RTENE 527 (570)
T ss_dssp -----------------------------------------CGG-GCCCCCCGGGHHHHTTCCTTTEEEE-EE--CBHHH
T ss_pred -----------------------------------------CCc-cCCCCCCHHHHHHHcCCCcCCcceE-Ee--cCHHH
Confidence 000 112234566789999997 55 44 57999
Q ss_pred HHHHHHHh-hcCCCCCcEEEEEEecCCC
Q 003948 406 LVTIFQRV-KEMPAPGPVLIHVVTEKGK 432 (784)
Q Consensus 406 l~~al~~a-k~~~~~~P~lI~v~T~kG~ 432 (784)
|.++++++ .+ .++|++||+.|.+..
T Consensus 528 l~~al~~a~~~--~~~p~liev~~~~~~ 553 (570)
T 2vbf_A 528 FVSVMKEAQAD--VNRMYWIELVLEKED 553 (570)
T ss_dssp HHHHHHHHHHC--TTSEEEEEEECCTTC
T ss_pred HHHHHHHHHhc--CCCcEEEEEEcCccc
Confidence 99999984 54 578999999998654
No 48
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.11 E-value=5.3e-11 Score=138.56 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=90.7
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|+++|+|+|+|+|.+ +++|||++|||+++. .+++|++|.++++|+++||.||+...+-...+++
T Consensus 411 ~~g~~G~~l~~A~G~ala~~----~~~vv~i~GDGs~~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~----- 479 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGAP----ERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDG----- 479 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCC-----
T ss_pred CcchhhhHHHHHHHHHHhCC----CCcEEEEEcChhHhc--cHHHHHHHHHcCCCcEEEEEECCcceEeeeeccC-----
Confidence 57899999999999999964 789999999999985 5788999999998876666555422211100000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCC---------eEEeecCCC
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGL---------YYIGPVDGH 401 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~---------~~i~~vDGh 401 (784)
.| .++-..+...++++||+ .++ .+ +
T Consensus 480 --------------~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~~~~-~v--~ 513 (568)
T 2wvg_A 480 --------------PY-----------------------------NNIKNWDYAGLMEVFNGNGGYDSGAGKGL-KA--K 513 (568)
T ss_dssp --------------GG-----------------------------GCCCCCCHHHHHHHHHCTTSSSCCCCEEE-EE--S
T ss_pred --------------CC-----------------------------cCCCCCCHHHHHHHhCCCcccccCCcceE-Ee--C
Confidence 00 01111344556899999 776 45 5
Q ss_pred CHHHHHHHHHHhhcCCCCCcEEEEEEecCCCC
Q 003948 402 NVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKG 433 (784)
Q Consensus 402 d~~~l~~al~~ak~~~~~~P~lI~v~T~kG~G 433 (784)
+.+++.++++++.+. .++|++||+.|.+..-
T Consensus 514 ~~~el~~al~~a~~~-~~gp~liev~~~~~~~ 544 (568)
T 2wvg_A 514 TGGELAEAIKVALAN-TDGPTLIECFIGREDC 544 (568)
T ss_dssp BHHHHHHHHHHHHHC-CSSCEEEEEECCTTCC
T ss_pred CHHHHHHHHHHHHhc-CCCcEEEEEEcCcccc
Confidence 789999999998863 2799999999998764
No 49
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.09 E-value=8e-11 Score=137.01 Aligned_cols=124 Identities=19% Similarity=0.264 Sum_probs=90.8
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|.+|.++|+|+|+|+|.+ +++|||++|||+++ +.+++|++|.++++|+++||.||+..++-..
T Consensus 420 ~~g~mG~~l~~A~G~ala~~----~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~--------- 484 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVSG----GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRT--------- 484 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHTT----TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHH---------
T ss_pred ccccccccchHHHHHHHhCC----CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEee---------
Confidence 56899999999999999974 78999999999999 8889999999999887766655542221000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
.+... .+ .++-..+...++++||+.++. | ++.++|.+++
T Consensus 485 ---------~~~~~----------------------------~~-~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al 523 (565)
T 2nxw_A 485 ---------FQPES----------------------------AF-NDLDDWRFADMAAGMGGDGVR-V--RTRAELKAAL 523 (565)
T ss_dssp ---------HCTTC----------------------------GG-GBCCCCCHHHHTGGGTSEEEE-E--CBHHHHHHHH
T ss_pred ---------ecccC----------------------------CC-CcCCCCCHHHHHHHcCCCEEE-e--CCHHHHHHHH
Confidence 00000 00 011123455679999999874 5 4789999999
Q ss_pred HHhhcCCCCCcE-EEEEEecCCC
Q 003948 411 QRVKEMPAPGPV-LIHVVTEKGK 432 (784)
Q Consensus 411 ~~ak~~~~~~P~-lI~v~T~kG~ 432 (784)
+++.+ .++|+ +||+.|.+..
T Consensus 524 ~~a~~--~~gp~~liev~~~~~~ 544 (565)
T 2nxw_A 524 DKAFA--TRGRFQLIEAMIPRGV 544 (565)
T ss_dssp HHHHH--CCSSCEEEEEECCTTC
T ss_pred HHHHh--cCCCeEEEEEEccccc
Confidence 99886 46887 9999998654
No 50
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.08 E-value=1.7e-10 Score=134.26 Aligned_cols=126 Identities=15% Similarity=0.164 Sum_probs=92.0
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCC-CCcCccCCCCCCCC
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~-~s~~t~~~dg~~~~ 329 (784)
+.|++|+++|+|+|+|+| ++++|+|++|||+++ +.+++|++|.++++|+++||.||+. .... ..+.....
T Consensus 424 ~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~-~~~~~~~~- 494 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGN-EADPQPGV- 494 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSC-CCCSBTTB-
T ss_pred CCccccccHHHHHHHHhC-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHH-HHHhhcCC-
Confidence 568999999999999998 378999999999997 6678999999999998888877763 2221 00000000
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~a 409 (784)
... . ..-..+...++++||+.++. | ++.++|.++
T Consensus 495 ~~~------------------------------------------~-~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~a 528 (568)
T 2c31_A 495 ISC------------------------------------------T-RLTRGRYDMMMEAFGGKGYV-A--NTPAELKAA 528 (568)
T ss_dssp CCT------------------------------------------T-BCCCCCHHHHHHTTTCEEEE-E--SSHHHHHHH
T ss_pred ccc------------------------------------------C-cCCCCCHHHHHHHcCCeEEE-e--CCHHHHHHH
Confidence 000 0 00123445669999999874 4 579999999
Q ss_pred HHHhhcCCCCCcEEEEEEecCCCC
Q 003948 410 FQRVKEMPAPGPVLIHVVTEKGKG 433 (784)
Q Consensus 410 l~~ak~~~~~~P~lI~v~T~kG~G 433 (784)
++++.+ .++|++||+.|.+...
T Consensus 529 l~~a~~--~~~p~liev~~~~~~~ 550 (568)
T 2c31_A 529 LEEAVA--SGKPCLINAMIDPDAG 550 (568)
T ss_dssp HHHHHH--HTSCEEEEEEBCTTSS
T ss_pred HHHHHh--CCCCEEEEEEeccccC
Confidence 999876 4789999999987653
No 51
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.07 E-value=2.9e-10 Score=132.21 Aligned_cols=127 Identities=16% Similarity=0.220 Sum_probs=91.9
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCC-CCcCccCCCCCCCC
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~-~s~~t~~~dg~~~~ 329 (784)
+.|++|+++|+|+|+|+| ++++|||++|||+++ +.+++|++|.++++|+++||.||+. .+.......+...
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~- 490 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGA- 490 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCC-
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCC-
Confidence 568999999999999998 378999999999997 5668899999999998888877763 2221000000000
Q ss_pred cchhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhcc-CCCchhhhhhcCCeEEeecCCCCHHHHHH
Q 003948 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI-SASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (784)
Q Consensus 330 v~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~-~~~~~~lfea~G~~~i~~vDGhd~~~l~~ 408 (784)
... .... ..+...++++||+.++. + ++.++|.+
T Consensus 491 ~~~-------------------------------------------~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~ 524 (564)
T 2q28_A 491 PSP-------------------------------------------TDLLHHARYDKLMDAFRGVGYN-V--TTTDELRH 524 (564)
T ss_dssp CCT-------------------------------------------TBCCTTCCGGGGGGGGTCEEEE-E--CSHHHHHH
T ss_pred ccc-------------------------------------------cccCCCCCHHHHHHHcCCeEEE-e--CCHHHHHH
Confidence 000 0000 23556789999999874 4 57999999
Q ss_pred HHHHhhcCCCCCcEEEEEEecCCCC
Q 003948 409 IFQRVKEMPAPGPVLIHVVTEKGKG 433 (784)
Q Consensus 409 al~~ak~~~~~~P~lI~v~T~kG~G 433 (784)
+++++.+ .++|++|||.|.+...
T Consensus 525 al~~a~~--~~~p~liev~~~~~~~ 547 (564)
T 2q28_A 525 ALTTGIQ--SRKPTIINVVIDPAAG 547 (564)
T ss_dssp HHHHHHH--HTSCEEEEEEBCTTSS
T ss_pred HHHHHHh--CCCCEEEEEEeccccC
Confidence 9999876 4789999999987653
No 52
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.06 E-value=1.8e-10 Score=133.87 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=88.9
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
+.|++|. +|+|+|+|+| + +++|+|++|||+++ +..++|++|.++++|+++||.||+...+- +.
T Consensus 415 ~~g~~G~-l~~A~Gaa~a-~----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~~-----~~---- 477 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRA-S----GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQIF-----SL---- 477 (556)
T ss_dssp SCCSSSH-HHHHHHHHHH-H----CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC---------------
T ss_pred ccccccH-HHHHHHHHhc-C----CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCcc-----cC----
Confidence 3577777 9999999998 3 78899999999997 56678999999999999888888742210 00
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
+ . ......+.+....-.++...++++||+.++. + ++.+++.+++
T Consensus 478 --~----------------~---------------~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~~l~~al 521 (556)
T 3hww_A 478 --L----------------P---------------TPQSERERFYLMPQNVHFEHAAAMFELKYHR-P--QNWQELETAF 521 (556)
T ss_dssp --------------------------------------------CCCCCCCCSHHHHHHTTCEEEC-C--SSHHHHHHHH
T ss_pred --C----------------C---------------CcchhHHHhccCCCCCCHHHHHHHcCCcEEe-c--CCHHHHHHHH
Confidence 0 0 0000000011111235667889999999874 4 5789999999
Q ss_pred HHhhcCCCCCcEEEEEEecCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG 431 (784)
+++++ .++|++|||.|.+.
T Consensus 522 ~~a~~--~~gp~liev~~~~~ 540 (556)
T 3hww_A 522 ADAWR--TPTTTVIEMVVNDT 540 (556)
T ss_dssp HHHTT--SSSEEEEEEECCSS
T ss_pred HHHHh--CCCCEEEEEECCcc
Confidence 99986 57999999999753
No 53
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.04 E-value=1.6e-10 Score=135.57 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=90.3
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 003948 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (784)
Q Consensus 251 g~G~~G~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v 330 (784)
|.|.+|.++|.|+|+|+|. +++|||++|||+++.+ +++|++|.++++|+++||.||+...+-..
T Consensus 453 G~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~--------- 516 (604)
T 2x7j_A 453 GANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSF--------- 516 (604)
T ss_dssp TTCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGG---------
T ss_pred CcCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCccccc---------
Confidence 5677889999999999993 6889999999999864 57799999999998877766653222000
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHH
Q 003948 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (784)
Q Consensus 331 ~~l~~~L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al 410 (784)
+ ...+.. . ..+.+.......+...++++||+.++ .| ++.++|.+++
T Consensus 517 --~----~~~q~~----------------------~---~~~~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~el~~al 562 (604)
T 2x7j_A 517 --L----PQASEK----------------------T---HFEDLFGTPTGLDFKHAAALYGGTYS-CP--ASWDEFKTAY 562 (604)
T ss_dssp --S----GGGSCH----------------------H---HHHHHTTCCCCCCTHHHHHHTTCEEE-CC--SSHHHHHHHC
T ss_pred --C----CCCccc----------------------h---hhHhhccCCCCCCHHHHHHHcCCeEE-ec--CCHHHHHHHH
Confidence 0 000000 0 00111111123566788999999987 45 4789999999
Q ss_pred HHhhcCCCCCcEEEEEEecCC
Q 003948 411 QRVKEMPAPGPVLIHVVTEKG 431 (784)
Q Consensus 411 ~~ak~~~~~~P~lI~v~T~kG 431 (784)
+++.+ .++|++|+|.|.+.
T Consensus 563 ~~a~~--~~gp~liev~~~~~ 581 (604)
T 2x7j_A 563 APQAD--KPGLHLIEIKTDRQ 581 (604)
T ss_dssp CCCCS--SCCEEEEEEECCHH
T ss_pred HHHHh--CCCCEEEEEECCcc
Confidence 88875 58999999999754
No 54
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=98.94 E-value=6.7e-10 Score=129.56 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHH
Q 003948 257 TSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSA 336 (784)
Q Consensus 257 ~~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~ 336 (784)
.++|+|+|+|+ .+++|||++|||+++ +.+++|++|.++++|+++||.||+...+-..
T Consensus 440 g~l~~AiGaa~------~~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~--------------- 496 (578)
T 3lq1_A 440 GVVSSALGASV------VFQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGIFSF--------------- 496 (578)
T ss_dssp SHHHHHHHHTT------TSSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC----------------------
T ss_pred cHHHHHHHHhc------CCCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCccccc---------------
Confidence 36999999863 278899999999998 6678899999999999999988874221000
Q ss_pred HHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCCCCHHHHHHHHHHhhcC
Q 003948 337 LSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM 416 (784)
Q Consensus 337 L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhd~~~l~~al~~ak~~ 416 (784)
+...+....|. ........+++..++++||+.++. | ++.++|.++++++.+
T Consensus 497 ~~~~~~~~~~~-------------------------~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al~~a~~- 547 (578)
T 3lq1_A 497 LPQANEPKYFE-------------------------SLFGTSTELDFRFAAAFYDADYHE-A--KSVDELEEAIDKASY- 547 (578)
T ss_dssp -------------------------------------------CCCTHHHHHHTTCEEEE-C--CSHHHHHHHHHHHTT-
T ss_pred cccccccchhh-------------------------hhccCCCCCCHHHHHHHcCCceEe-c--CCHHHHHHHHHHHHh-
Confidence 00000000000 000001135667889999999874 4 589999999999987
Q ss_pred CCCCcEEEEEEecCCCCCCh
Q 003948 417 PAPGPVLIHVVTEKGKGYPP 436 (784)
Q Consensus 417 ~~~~P~lI~v~T~kG~G~~~ 436 (784)
.++|++|||.|.+..-..+
T Consensus 548 -~~gp~liev~~~~~~~~~~ 566 (578)
T 3lq1_A 548 -HKGLDIIEVKTNRHENKAN 566 (578)
T ss_dssp -SSSEEEEEEC---------
T ss_pred -CCCCEEEEEECCccccHHH
Confidence 5899999999987654433
No 55
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.98 E-value=8.9e-06 Score=101.96 Aligned_cols=115 Identities=21% Similarity=0.312 Sum_probs=77.5
Q ss_pred CCeEEEEEcCC-cccchhhHHHHHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHHHhhhhhhHHHHHHHH
Q 003948 275 NNNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAA 353 (784)
Q Consensus 275 ~~~Vv~viGDG-al~eG~~~EAln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~L~~~~~~~~~~~lr~~~ 353 (784)
++.|||+.||| +++.| ...|.+|.+.+.|+++||.||+.+++ |..|.....+.+...
T Consensus 953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg~-tg~Q~s~~t~~~~~t------------------- 1010 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSN-TGGQSSKATPTGAVA------------------- 1010 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTT-TTCBCCTTSCTTCCB-------------------
T ss_pred CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHHh-HHhhhccCCCCCcee-------------------
Confidence 37899999999 88855 56899999999999999999985332 111211111111000
Q ss_pred HHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhcCCeEEeecCC-CCHHHHHHHHHHhhcCCCCCcEEEEEEec
Q 003948 354 KSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDG-HNVEDLVTIFQRVKEMPAPGPVLIHVVTE 429 (784)
Q Consensus 354 ~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDG-hd~~~l~~al~~ak~~~~~~P~lI~v~T~ 429 (784)
+ + ....+....++...++++||+.|+..+.- .+.+++.++++++.+ .++|++|++.+.
T Consensus 1011 ----~--------~----~~~g~~~~~~D~~~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~--~~GP~lI~v~~~ 1069 (1231)
T 2c42_A 1011 ----K--------F----AAAGKRTGKKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAES--FPGPSLVIAYAT 1069 (1231)
T ss_dssp ----B--------T----BTTCCSSCCCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH--SSSCEEEEEECC
T ss_pred ----e--------e----cccCCCCCchhHHHHHHHCCCCEEEEEeccCCHHHHHHHHHHHHh--cCCCEEEEEeec
Confidence 0 0 00001111245667899999998866544 599999999999987 589999999985
No 56
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=90.93 E-value=0.37 Score=55.92 Aligned_cols=111 Identities=11% Similarity=-0.031 Sum_probs=76.2
Q ss_pred eccccHHHHHHHHHHHHhcCCee-EEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhHhHh
Q 003948 511 DVGIAEQHAVTFAAGLASEGVKP-FCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFM 586 (784)
Q Consensus 511 d~GIaE~~~vg~AaGlA~~G~~P-~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dla~l 586 (784)
-....|++++.+|.|+|...-+| +|. |..+.+..++.-+ ..+...+.|++++...... .|.+ .+|......++
T Consensus 47 i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl-~~A~~~~vPll~Itg~~p~~~~g~~--~~Q~~d~~~~~ 123 (590)
T 1v5e_A 47 LQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGL-YDAAMDNIPVVAILGSRPQRELNMD--AFQELNQNPMY 123 (590)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTTT--CTTCCCCHHHH
T ss_pred EeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHH-HHHHhcCCCEEEEcCCCCcccCCCC--cccccCHHHHH
Confidence 34699999999999999974444 333 4667765666555 4567779998888633222 2322 35555556788
Q ss_pred ccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCCC
Q 003948 587 SCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (784)
Q Consensus 587 r~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~~ 626 (784)
+.+-.+ .+.+.+++++..++..|+.. ..+||+| +|...
T Consensus 124 ~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 124 DHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 887665 67778888888877777662 3489999 98753
No 57
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=89.01 E-value=1.3 Score=51.02 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=73.1
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEE-EecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~-~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++. ...|++++.+|.|+|.. |...+| .|+.+-+..++.-+ ..+...+.|++++...... .|. ..||.....
T Consensus 50 ~~v~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l-~~A~~~~vPll~itg~~~~~~~~~--~~~Q~~d~~ 125 (566)
T 1ozh_A 50 RIIP-VRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGM-ATANSEGDPVVALGGAVKRADKAK--QVHQSMDTV 125 (566)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTC--------CCCHH
T ss_pred cEEE-eCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHHHH-HHHHhcCCCEEEEeCCCccccCCC--CcccccCHH
Confidence 5555 49999999999999985 644343 35777665555554 4567779998888632221 232 246766667
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
.+++.+... .+...+++++...+..|+.. ..+||+|-+|..
T Consensus 126 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 126 AMFSPVTKY-AIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHGGGCSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhhe-EEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 788877655 45556777777777666652 358999988764
No 58
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=88.76 E-value=3.6 Score=47.21 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=71.6
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeE-EEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCc----
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPF-CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG---- 579 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~-~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~---- 579 (784)
|++. ...|++++.+|.|+|.. | ..+ +.|+.+-...++.-+ ..+...+.|++++...... .+.+...||.
T Consensus 43 ~~i~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (568)
T 2wvg_A 43 EQVY-CCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAI-GGAYAENLPVILISGAPNNNDHAAGHVLHHALGKT 119 (568)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEec-cCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHH-HHHhhhCCCEEEEeCCCChhHhccCcceeeecccc
Confidence 5555 49999999999999974 8 433 335777666666665 4577889998888733222 3333233442
Q ss_pred -h-hhHhHhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCC
Q 003948 580 -A-FDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (784)
Q Consensus 580 -~-~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~ 625 (784)
. ....+++.+-.. .+...+++++...+..|+. ...+||+|-+|..
T Consensus 120 ~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 120 DYHYQLEMAKNITAA-AEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp CCCHHHHHHTTSCSC-EEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred chHHHHHHHHhhEeE-EEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 1 335777776665 3444555555555544443 1349999988865
No 59
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=88.63 E-value=2.9 Score=48.56 Aligned_cols=122 Identities=8% Similarity=0.010 Sum_probs=79.9
Q ss_pred hhhHHhCCCCeeeccccHHHHHHHHHHHHhc-CCeeEE--EecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC-CCCC
Q 003948 499 NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFC--AIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL-VGAD 573 (784)
Q Consensus 499 ~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~--~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G~-~G~d 573 (784)
+.+.+. ++=-+-....|++++.+|.|+|.. |.+|.+ .|+.+-...++.-| ..+.+.+.|++++. ++..- .+.+
T Consensus 58 ~al~~~-~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l-~~A~~~~vPlvvItg~~p~~~~~~~ 135 (616)
T 2pan_A 58 SAMRKH-GGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITAL-YSASADSIPILCITGQAPRARLHKE 135 (616)
T ss_dssp HHHHHH-CCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHH-HHHHHTTCCEEEEEEECCGGGTTTT
T ss_pred HHHHhc-CCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCcc
Confidence 344432 433334469999999999999986 455443 35777666666665 56778899988876 33321 2322
Q ss_pred CCCcCchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 574 GPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 574 G~THq~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
.+|......+++.+-.+. +...+++++..+++.|+.. ..+||+|-+|..
T Consensus 136 --~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 136 --DFQAVDIEAIAKPVSKMA-VTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp --CTTCCCHHHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred --cccccCHHHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 245555567777766654 4556678888888888763 358999987653
No 60
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=88.46 E-value=1.8 Score=49.98 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=77.9
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++. ...|++++.+|.|+|.. |...+|. |+.+....++.-+ ..+...+.|++++...... .|.+ .+|.....
T Consensus 52 ~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~g~~--~~Q~~d~~ 127 (590)
T 1ybh_A 52 RNVL-PRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGTD--AFQETPIV 127 (590)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTTT--CTTCCCHH
T ss_pred cEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHH-HHHHhhCCCEEEEeCcCCccccCCC--cccccCHH
Confidence 4444 58999999999999986 6444443 4777665555554 4667789998888632221 2332 35656666
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
.+++.+-.+ .+...+++++..++..|+.. ..+||+|-+|..
T Consensus 128 ~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 128 EVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 788877665 55667788888888888873 357999988754
No 61
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=88.30 E-value=1.2 Score=51.31 Aligned_cols=115 Identities=17% Similarity=0.058 Sum_probs=78.2
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeE-EEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPF-CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~-~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~d 582 (784)
=|++. ...|++++-+|.|+|.. |.-.+ +.|+.+-...++.-+ ..+.+.+.|++++...... .|.. ..||....
T Consensus 49 i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v-~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d~ 125 (573)
T 2iht_A 49 IDFVL-TRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGI-ATSVLDRSPVIALAAQSESHDIFPN-DTHQCLDS 125 (573)
T ss_dssp CEEEE-CSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHH-HHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCCH
T ss_pred CeEEe-eCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHHHHHH-HHHHhhCCCEEEEcccCcccccCCc-CccccCCH
Confidence 45554 58999999999999986 53333 335777776666665 5677789998888632221 2321 35777777
Q ss_pred HhHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCCC
Q 003948 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (784)
Q Consensus 583 la~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r~ 625 (784)
..+++.+..+ .+...+++++...+..|+.. ..+||+|-+|..
T Consensus 126 ~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 126 VAIVAPMSKY-AVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp HHHHGGGSSE-EEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred HHHHHhHhhE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 7888877665 44556677777777777652 348999988754
No 62
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=88.03 E-value=2.1 Score=49.16 Aligned_cols=151 Identities=16% Similarity=0.108 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHHHHhhCCCEEEEecCCCCCCCh---hhhHHhCCCCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecH
Q 003948 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL---NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYS 539 (784)
Q Consensus 465 ~s~~~af~~aL~~l~~~d~~iv~i~aD~ggs~gl---~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys 539 (784)
++..+++.+.|.+..- +.++.+ .|+..+ +.+.+ .+.+.+-....|++++-+|.|+|.. |...+|. |+.
T Consensus 21 ~~~a~~lv~~L~~~GV--~~vfg~----PG~~~~~l~~al~~-~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsG 93 (565)
T 2nxw_A 21 MKLAEALLRALKDRGA--QAMFGI----PGDFALPFFKVAEE-TQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYG 93 (565)
T ss_dssp CBHHHHHHHHHHHTTC--CCEEEC----CCGGGHHHHHHHHH-HCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTT
T ss_pred cCHHHHHHHHHHHcCC--CEEEEC----CCcchHHHHHHHHh-CCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 4555666555544211 234442 233322 34443 2444556679999999999999986 6443333 477
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCC-cCc--hh-hHhHhccCCCcEEEecCCHHH----HHHHHHH
Q 003948 540 SFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT-HCG--AF-DVTFMSCLPNMVVMAPSDEAE----LMHMVAT 609 (784)
Q Consensus 540 ~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~T-Hq~--~~-dla~lr~iPn~~V~~Psd~~E----~~~~l~~ 609 (784)
+-...++.-+ ..+...+.|++++...... .|.+... |+. .. ...+++.+-... +...++++ +..+++.
T Consensus 94 pG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~ 171 (565)
T 2nxw_A 94 AGAFNMVNAV-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQ-ARLDDPAKAPAEIARVLGA 171 (565)
T ss_dssp HHHHTTHHHH-HHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCE-EECCCTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEE-EEeCCHHHHHHHHHHHHHH
Confidence 7665555554 4677789998888733222 3433333 332 32 456777766543 33334444 4444555
Q ss_pred HHHhCCCCeEEEcCCC
Q 003948 610 AAVIDDRPSCFRFPRG 625 (784)
Q Consensus 610 A~~~~~~Pv~irl~r~ 625 (784)
|... .+||+|-+|..
T Consensus 172 A~~~-~GPV~l~iP~D 186 (565)
T 2nxw_A 172 ARAQ-SRPVYLEIPRN 186 (565)
T ss_dssp HHHH-TCCEEEEEEGG
T ss_pred HHhC-CCCEEEECChh
Confidence 5443 68999999854
No 63
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=87.51 E-value=4.1 Score=46.53 Aligned_cols=113 Identities=13% Similarity=0.086 Sum_probs=73.1
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEE-EecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCCC-CCCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAG-LVGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~-~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~G-~~G~dG~THq~~~dl 583 (784)
|++. ...|++++-+|.|+|.. |...+| .|+.+-...++.-| ..+...+.|++++. ++.- ..|.+ .+|.....
T Consensus 43 ~~i~-~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi-~~A~~~~vPvl~itg~~~~~~~~~~--~~Q~~d~~ 118 (549)
T 3eya_A 43 EWMS-TRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGSG--YFQETHPQ 118 (549)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEESCGGGTTSC--CTTCCCHH
T ss_pred eEEE-eCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHH-HHHHhhCCCEEEEeCCCchhhcCCC--CCCccCHH
Confidence 5554 48999999999999985 644443 35777765555555 56778899988886 3221 12322 35555566
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~ 625 (784)
.+++.+-.+ .+...+++++...+..|+. ...+|++|-+|..
T Consensus 119 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 119 ELFRECSHY-CELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp HHTSTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred HHHhhhhhe-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 778876654 3444556555555555544 2568999988753
No 64
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=87.36 E-value=1.2 Score=51.28 Aligned_cols=121 Identities=14% Similarity=0.073 Sum_probs=80.6
Q ss_pred hhhHHhCCCCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCC
Q 003948 499 NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADG 574 (784)
Q Consensus 499 ~~f~~~~p~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG 574 (784)
+.+.+. +=|++. ...|++++.+|.|+|.. |...+|. |+.+-+..++.-+ ..+...+.|++++...... .|.
T Consensus 35 ~al~~~-~i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~-- 109 (563)
T 2uz1_A 35 QACLDH-DVPIID-TRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNAVTPI-ANAWLDRTPVLFLTGSGALRDDET-- 109 (563)
T ss_dssp HHHHHH-TCCEEE-CSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTS--
T ss_pred HHHHhc-CCcEEe-eCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCc--
Confidence 344433 456666 49999999999999986 6444443 4777665665555 4567789998888733222 233
Q ss_pred CCcCc-hhhHhHhccCCCcEEEecCCHHHHHHHHHHHHH----hCCCCeEEEcCCC
Q 003948 575 PTHCG-AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (784)
Q Consensus 575 ~THq~-~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~----~~~~Pv~irl~r~ 625 (784)
..||. .....+++.+... .+...+++++...+..|+. ...+||+|-+|..
T Consensus 110 ~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 110 NTLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hhhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 23666 6667788877655 4555677777777776665 2458999988765
No 65
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=86.80 E-value=3.6 Score=47.16 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=70.4
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCc----
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG---- 579 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~---- 579 (784)
|++. ...|++++.+|.|+|.. | ..+|. |+.+-...++.-+ ..+...+.|++++...... .+.+...||.
T Consensus 43 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (566)
T 2vbi_A 43 KQIY-CCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISAMNAL-GGAYAENLPVILISGAPNSNDQGTGHILHHTIGKT 119 (566)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEEe-eCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHH-HHHHhhCCCEEEEECCCChHHhccCceeeeeccCc
Confidence 4554 58999999999999975 8 54444 4777666666665 4577889998888733222 2332223332
Q ss_pred --hhhHhHhccCCCcEEEecCCHHHH----HHHHHHHHHhCCCCeEEEcCCCC
Q 003948 580 --AFDVTFMSCLPNMVVMAPSDEAEL----MHMVATAAVIDDRPSCFRFPRGN 626 (784)
Q Consensus 580 --~~dla~lr~iPn~~V~~Psd~~E~----~~~l~~A~~~~~~Pv~irl~r~~ 626 (784)
.....+++.+-... +.+.+++++ ..+++.|... .+||+|-+|...
T Consensus 120 ~~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d~ 170 (566)
T 2vbi_A 120 DYSYQLEMARQVTCAA-ESITDAHSAPAKIDHVIRTALRE-RKPAYLDIACNI 170 (566)
T ss_dssp CCTHHHHHHHTTCSEE-EEECSSSSHHHHHHHHHHHHHHH-TCCEEEEEETTT
T ss_pred chHHHHHHHhhhEeEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 13356777765543 333333333 4444455443 499999998753
No 66
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=86.63 E-value=4 Score=47.22 Aligned_cols=122 Identities=11% Similarity=0.031 Sum_probs=74.0
Q ss_pred hhhHHhCC-CCeeeccccHHHHHHHHHHHHhc-CCeeEE-EecHhHHHHHHHHHHHHhhcCCCCEEEEe-eCC-CCCCCC
Q 003948 499 NYFQKRFP-DRCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFLQRGYDQVVHDVDLQKLPVRFAM-DRA-GLVGAD 573 (784)
Q Consensus 499 ~~f~~~~p-~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~-~tys~Fl~ra~dQi~~~~a~~~lpV~~v~-~~~-G~~G~d 573 (784)
+.+.+..+ =|++. ...|++++-+|.|+|.. |...+| .|+.+-...++.-| ..+...+.||+++. ++. ...|.+
T Consensus 42 dal~~~~~~i~~i~-~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N~~~gi-a~A~~~~vPvl~itG~~~~~~~~~~ 119 (603)
T 4feg_A 42 DALSAERDRIHYIQ-VRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGL-YDAREDHVPVLALIGQFGTTGMNMD 119 (603)
T ss_dssp HHHHHTTTTSEEEE-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEECCTTTTTSC
T ss_pred HHHHhccCCCeEEE-ecChHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHH-HHHHHcCCCEEEEecCCcccccCCC
Confidence 34444322 35554 48999999999999975 644444 35777766665555 56778899988876 332 112332
Q ss_pred CCCcCchhhHhHhccCCCcEE--EecCC-HHHHHHHHHHHHHhCCCCeEEEcCCC
Q 003948 574 GPTHCGAFDVTFMSCLPNMVV--MAPSD-EAELMHMVATAAVIDDRPSCFRFPRG 625 (784)
Q Consensus 574 G~THq~~~dla~lr~iPn~~V--~~Psd-~~E~~~~l~~A~~~~~~Pv~irl~r~ 625 (784)
.+|......+++.+-.... -.|.+ +..+..+++.|.. ..+|++|-+|..
T Consensus 120 --~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~d 171 (603)
T 4feg_A 120 --TFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVVQIPVD 171 (603)
T ss_dssp --CTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEEEEETT
T ss_pred --ccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChh
Confidence 3454445567776655432 23444 2333444555544 478999998875
No 67
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=86.38 E-value=9.7 Score=43.49 Aligned_cols=147 Identities=11% Similarity=0.076 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhC-CCEEEEecCCCCCCCh---hhhHHhCCC-CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHH
Q 003948 471 FAESLIKEAETD-DKIVAIHAAMGGGTGL---NYFQKRFPD-RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQ 543 (784)
Q Consensus 471 f~~aL~~l~~~d-~~iv~i~aD~ggs~gl---~~f~~~~p~-R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ 543 (784)
.++.|.+.+++. -+-++. +.|+..+ +.+.+ .++ |++- -..|++++-+|-|+|.. |...+|. |+.+-..
T Consensus 10 ~a~~lv~~L~~~GV~~vFg---~PG~~~~~l~dal~~-~~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~ 84 (556)
T 3hww_A 10 WAAVILEALTRHGVRHICI---APGSRSTLLTLAAAE-NSAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTAVA 84 (556)
T ss_dssp HHHHHHHHHHTTTCCEEEE---CCCTTSHHHHHHHHH-CTTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHCCCCEEEE---cCCCCcHHHHHHHhh-CCCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHH
Confidence 455666665544 233332 2234433 33433 344 5554 57899999999999985 6444443 5777765
Q ss_pred HHHHHHHHHhhcCCCCEEEEeeCCC--CCCCCCCCcCchhhHhHhccCCCcEEE--ecCC---HHHHHHHHHHHHHh-CC
Q 003948 544 RGYDQVVHDVDLQKLPVRFAMDRAG--LVGADGPTHCGAFDVTFMSCLPNMVVM--APSD---EAELMHMVATAAVI-DD 615 (784)
Q Consensus 544 ra~dQi~~~~a~~~lpV~~v~~~~G--~~G~dG~THq~~~dla~lr~iPn~~V~--~Psd---~~E~~~~l~~A~~~-~~ 615 (784)
.++.-| ..+...+.|++++..... ..|.+ .||......+++.+-..... .|.+ ++++..+++.|+.. ..
T Consensus 85 N~~~gi-a~A~~d~vPll~itG~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~ 161 (556)
T 3hww_A 85 NLYPAL-IEAGLTGEKLILLTADRPPELIDCG--ANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHA 161 (556)
T ss_dssp TTHHHH-HHHHHHCCCEEEEEEECCGGGSSSS--CTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCS
T ss_pred hhhHHH-HHHHHhCCCeEEEeCCCCHHHhccC--CCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCC
Confidence 555554 567778999888863222 13332 37766666777776655443 3432 45688899999862 35
Q ss_pred CCeEEEcCCC
Q 003948 616 RPSCFRFPRG 625 (784)
Q Consensus 616 ~Pv~irl~r~ 625 (784)
+||+|-+|..
T Consensus 162 GPV~i~iP~d 171 (556)
T 3hww_A 162 GGVHINCPFA 171 (556)
T ss_dssp SCEEEEEECC
T ss_pred CCEEEeCCcC
Confidence 7999998864
No 68
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=84.85 E-value=4.6 Score=45.79 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=73.5
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++ ....|++++.+|.|+|.. |...+|. |..+-+..++.-+ ..+...+.|++++...... .|.+..+|. ....
T Consensus 40 ~~i-~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~~~~q~~-~d~~ 116 (528)
T 1q6z_A 40 RYI-LALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGAL-SNAWNSHSPLIVTAGQQTRAMIGVEALLTN-VDAA 116 (528)
T ss_dssp EEE-ECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHTTTCTTCC-TTGG
T ss_pred cEE-EECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHH-HHHhhcCCCEEEEeCCCcccccCCCccccc-ccHH
Confidence 444 458999999999999986 6555553 4667666666665 4577889998888632221 344333331 3445
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHH----hCCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~----~~~~Pv~irl~r~ 625 (784)
.+++.+..+ .+.+.+++++...+..|+. ...+||+|-+|..
T Consensus 117 ~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 117 NLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp GSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred HHHHHhhHh-hhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 677766655 4445556656556665554 3457999988764
No 69
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=84.39 E-value=1.4 Score=50.88 Aligned_cols=113 Identities=8% Similarity=-0.047 Sum_probs=75.1
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCe-eEEEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVK-PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~-P~~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~~dl 583 (784)
|++.+ ..|++++-+|.|+|.. |.. .++.|+.+....++.-+ ..+...+.|++++...... .|. |..||.....
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~-~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAM-QEARTGRIPAVHIGLNSDGRLAGR-SEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHH-HHHHHTTCCEEEEEEESCGGGTTC-TTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCC-CCcccccChh
Confidence 55554 8999999999999986 543 33445777655555554 5677889998888632221 232 2157777666
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHH----hCCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~----~~~~Pv~irl~r~ 625 (784)
. ++.+..+ .+...+++++...+..|+. ...+||+|-+|..
T Consensus 122 ~-~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 122 S-FTPIARS-TQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp G-GTTTSSE-EEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred h-ccccEEE-EeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 7 7776654 4455667777777777765 2347999988865
No 70
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=84.06 E-value=5.1 Score=45.95 Aligned_cols=116 Identities=10% Similarity=0.035 Sum_probs=70.4
Q ss_pred CCCeeeccccHHHHHHHHHHHHh-cCCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCch-
Q 003948 506 PDRCFDVGIAEQHAVTFAAGLAS-EGVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA- 580 (784)
Q Consensus 506 p~R~~d~GIaE~~~vg~AaGlA~-~G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~- 580 (784)
++=-+-....|++++.+|.|+|. .| ..+|. |+.+....++.-+ ..+...+.|++++...... .+.+...||..
T Consensus 62 ~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~~~gi-~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~ 139 (570)
T 2vbf_A 62 EDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSAINGL-AGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLA 139 (570)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCS
T ss_pred CCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHHHHHH-HHHhhhCCCEEEEeCCCCHHHhhccccceeecc
Confidence 43333446999999999999995 58 44433 4777766666665 4677889998888632221 22223344411
Q ss_pred -----hhHhHhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEcCCC
Q 003948 581 -----FDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (784)
Q Consensus 581 -----~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl~r~ 625 (784)
+...+++.+.......+ + +++...+..|+. ...+||+|-+|..
T Consensus 140 ~~~~~~~~~~~~~~tk~~~~v~-~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 140 DGDFKHFMKMHEPVTAARTLLT-A-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp SSCCCHHHHHTGGGCSEEEECC-T-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred ccchHHHHHHhhhhEEEEEEEC-c-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 13466777665544333 3 555555554444 1348999988753
No 71
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=83.72 E-value=2.2 Score=50.37 Aligned_cols=112 Identities=16% Similarity=0.072 Sum_probs=76.2
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEE-EecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCC--CCCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAG--LVGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~-~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G--~~G~dG~THq~~~dl 583 (784)
|++. ...|++++.+|.|+|.. |...+| .|+.+....++.-| ..+...+.|++++..... ..|. ..+|.....
T Consensus 122 ~~v~-~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gi-a~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~ 197 (677)
T 1t9b_A 122 NFVL-PKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPM-ADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVV 197 (677)
T ss_dssp EEEC-CSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHH
T ss_pred eEEE-eCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHH-HHHHHcCCCEEEEeCCCChhhcCC--CCccccCHH
Confidence 4554 59999999999999985 644343 35777765555555 466777999888863222 1233 235656666
Q ss_pred hHhccCCCcEEEecCCHHHHHHHHHHHHHh----CCCCeEEEcCC
Q 003948 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPR 624 (784)
Q Consensus 584 a~lr~iPn~~V~~Psd~~E~~~~l~~A~~~----~~~Pv~irl~r 624 (784)
.+++.+-.+. +...+++++...+..|+.. ..+||+|-+|.
T Consensus 198 ~i~~~~tk~~-~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 198 GISRSCTKWN-VMVKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp HHTGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred HHhhhheeEE-EEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 7888766554 4456778888888888762 46899998873
No 72
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=81.11 E-value=12 Score=43.00 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhC-CCEEEEecCCCCCCCh---hhhHHhCC-CCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHH
Q 003948 471 FAESLIKEAETD-DKIVAIHAAMGGGTGL---NYFQKRFP-DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQ 543 (784)
Q Consensus 471 f~~aL~~l~~~d-~~iv~i~aD~ggs~gl---~~f~~~~p-~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ 543 (784)
.++.|.+.+++. -+-++. +.|+..+ +.+.+ .+ =|++.+ ..|++++-+|.|+|.. |...+|. |..+-..
T Consensus 13 ~a~~lv~~L~~~GV~~vFg---~PG~~~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~ 87 (578)
T 3lq1_A 13 YLAAFIEELVQAGVKEAII---SPGSRSTPLALMMAE-HPILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAA 87 (578)
T ss_dssp HHHHHHHHHHHTTCCEEEE---CCCTTTHHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHcCCCEEEE---CCCCccHHHHHHHHh-CCCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhh
Confidence 445555555443 233332 2234333 34443 33 355554 7999999999999975 6444443 5777765
Q ss_pred HHHHHHHHHhhcCCCCEEEEe-eCCC-CCCCCCCCcCchhhHhHhccCCCcE--EEecCCHHH----HHHHHHHHHH---
Q 003948 544 RGYDQVVHDVDLQKLPVRFAM-DRAG-LVGADGPTHCGAFDVTFMSCLPNMV--VMAPSDEAE----LMHMVATAAV--- 612 (784)
Q Consensus 544 ra~dQi~~~~a~~~lpV~~v~-~~~G-~~G~dG~THq~~~dla~lr~iPn~~--V~~Psd~~E----~~~~l~~A~~--- 612 (784)
.++.-| ..+...+.|++++. ++.- ..|.+ .+|......+++.+-.+. |-.|.+..+ +..+++.|+.
T Consensus 88 N~~~gi-a~A~~d~vPll~itG~~p~~~~g~~--~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~ 164 (578)
T 3lq1_A 88 NYFPAV-AEANLSQIPLIVLTADRPHELRNVG--APQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAM 164 (578)
T ss_dssp TTHHHH-HHHHHTTCCEEEEEEECCGGGTTSS--CTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHhcCCCeEEEeCCCCHHhhcCC--CCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 555554 56778899988886 3321 12322 355555556777665543 345666433 2234444444
Q ss_pred -hCCCCeEEEcCCC
Q 003948 613 -IDDRPSCFRFPRG 625 (784)
Q Consensus 613 -~~~~Pv~irl~r~ 625 (784)
-..+||+|-+|..
T Consensus 165 ~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 165 KTPRGPVHLNFPLR 178 (578)
T ss_dssp SSSCCCEEEEEECC
T ss_pred CCCCCcEEEECccC
Confidence 2478999998864
No 73
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=79.33 E-value=8.7 Score=44.36 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=70.5
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeE-EEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCC--CCCCCCCCcCchhhH
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPF-CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAG--LVGADGPTHCGAFDV 583 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~-~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G--~~G~dG~THq~~~dl 583 (784)
|++.+ ..|++++-+|.|+|.. |...+ +.|+.+-...++.-| ..+.+.+.|++++..... ..|.+ .+|.....
T Consensus 71 ~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gi-a~A~~~~vPlv~ItG~~~~~~~g~~--~~Q~~d~~ 146 (604)
T 2x7j_A 71 SVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAV-VEAHYSRVPIIVLTADRPHELREVG--APQAINQH 146 (604)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGSSSC--CTTCCCCT
T ss_pred eEEEe-cChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHHHHH-HHHhhcCCCEEEEeCCCCHHHhCCC--CCCcCcHH
Confidence 56654 9999999999999986 54333 335777665555554 566778999888863222 13332 35555555
Q ss_pred hHhccCCCcEE--EecCCH----HHHHHHHHHHHH----hCCCCeEEEcCCC
Q 003948 584 TFMSCLPNMVV--MAPSDE----AELMHMVATAAV----IDDRPSCFRFPRG 625 (784)
Q Consensus 584 a~lr~iPn~~V--~~Psd~----~E~~~~l~~A~~----~~~~Pv~irl~r~ 625 (784)
.+++.+-.+.. -.|.+. .++...+..|+. -..+||+|-+|..
T Consensus 147 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 147 FLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp TTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred HHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 67776665533 334440 114445554444 2468999998865
No 74
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=77.12 E-value=4.6 Score=46.27 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=75.8
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeE-EEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCC-CCCCcCchh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPF-CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGA-DGPTHCGAF 581 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~-~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~-dG~THq~~~ 581 (784)
=|++.+ ..|++++-+|.|+|.. |...+ +.|+.+-...++.-+ ..+...+.|++++...... .|. .| .+|...
T Consensus 48 i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~~~~i-~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~d 124 (568)
T 2c31_A 48 QRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSL-AHATTNCFPMILLSGSSEREIVDLQQG-DYEEMD 124 (568)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCC-CTTCCC
T ss_pred CcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEccCCCccccCCCCC-cccccC
Confidence 455554 9999999999999986 64333 345777776666665 5677889998888632221 221 12 355555
Q ss_pred hHhHhccCCCcEEEecCCHHHHHHHHHHHHH----hCCCCeEEEcCCC
Q 003948 582 DVTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (784)
Q Consensus 582 dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~----~~~~Pv~irl~r~ 625 (784)
...+++.+-.. .+...+++++...+..|+. ...+||+|-+|..
T Consensus 125 q~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 125 QMNVARPHCKA-SFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp HHHHSGGGSSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred HHHHHHhhhhe-eeecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 56777876655 3444566666666666655 2468999988875
No 75
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=74.84 E-value=14 Score=41.96 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=69.0
Q ss_pred CCCeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCch-
Q 003948 506 PDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA- 580 (784)
Q Consensus 506 p~R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~- 580 (784)
++=-+-....|++++.+|.|+|.. | .++|. |+.+-...++.-+ ..+...+.|++++...... .+.+...|+..
T Consensus 42 ~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N~~~gv-~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g 119 (552)
T 1ovm_A 42 PDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGELSAMNGI-AGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLG 119 (552)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCS
T ss_pred CCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHHHHHHH-HHHhhhcCCEEEEECCCCHHHHhcccccccccC
Confidence 443344569999999999999975 6 54444 4777665566555 5677889998888632221 11111222111
Q ss_pred -----hhHhHhccCCCcEEEecC-C-HHHHHHHHHHHHHhCCCCeEEEcCCC
Q 003948 581 -----FDVTFMSCLPNMVVMAPS-D-EAELMHMVATAAVIDDRPSCFRFPRG 625 (784)
Q Consensus 581 -----~dla~lr~iPn~~V~~Ps-d-~~E~~~~l~~A~~~~~~Pv~irl~r~ 625 (784)
+...+++.+-......+. + +..+..+++.|... .+||+|-+|..
T Consensus 120 ~~~~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 170 (552)
T 1ovm_A 120 DGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE-RRPGYLMLPAD 170 (552)
T ss_dssp SSCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-TCCEEEEEEHH
T ss_pred CCcHHHHHHHHHhheeEEEEEccccHHHHHHHHHHHHHhC-CCCEEEEeehh
Confidence 124567766655444443 1 34444455555443 48999988764
No 76
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=74.29 E-value=14 Score=42.03 Aligned_cols=114 Identities=15% Similarity=0.108 Sum_probs=69.7
Q ss_pred CeeeccccHHHHHHHHHHHHhc-CCeeEEE-ecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCcCch---
Q 003948 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA--- 580 (784)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~~P~~~-tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~dG~THq~~--- 580 (784)
|++. ...|++++.+|.|+|.. | .++|. |+.+-...++.-+ ..+...+.|++++...... .+.+-..|+..
T Consensus 44 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 44 RWAG-NANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGI-AGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred eEEc-cCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEECCCChHHhhcccccccccCCc
Confidence 4544 59999999999999984 7 54444 5777665566555 4567789998888632221 11221222211
Q ss_pred ---hhHhHhccCCCcEEEecCC----HHHHHHHHHHHHHhCCCCeEEEcCCCC
Q 003948 581 ---FDVTFMSCLPNMVVMAPSD----EAELMHMVATAAVIDDRPSCFRFPRGN 626 (784)
Q Consensus 581 ---~dla~lr~iPn~~V~~Psd----~~E~~~~l~~A~~~~~~Pv~irl~r~~ 626 (784)
+...+++.+-... +...+ +..+..+++.|... .+||+|-+|...
T Consensus 121 ~~q~~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d~ 171 (563)
T 2vk8_A 121 DFTVFHRMSANISETT-AMITDIATAPAEIDRCIRTTYVT-QRPVYLGLPANL 171 (563)
T ss_dssp CSSHHHHHHHTTCSEE-EECCCTTTHHHHHHHHHHHHHHH-TSCEEEEEETTG
T ss_pred chHHHHHHhhhhEEEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 2346777766543 33344 34455566666544 499999998753
No 77
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=71.62 E-value=8 Score=44.18 Aligned_cols=115 Identities=12% Similarity=0.033 Sum_probs=75.0
Q ss_pred CCeeeccccHHHHHHHHHHHHhc-CCeeE-EEecHhHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCC-CCCCcCchh
Q 003948 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPF-CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGA-DGPTHCGAF 581 (784)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~~P~-~~tys~Fl~ra~dQi~~~~a~~~lpV~~v~~~~G~--~G~-dG~THq~~~ 581 (784)
=|++.+ ..|++++-+|.|+|.. |.-.+ +.|+.+-...++.-+ ..+...+.|++++...... .|. .| .+|...
T Consensus 46 i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~~gi-~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~d 122 (564)
T 2q28_A 46 IRYIGF-RHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTAL-ANATVNGFPMIMISGSSDRAIVDLQQG-DYEELD 122 (564)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTSC-CTTCCC
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCC-cccccc
Confidence 455554 9999999999999986 54333 345777776666665 5677889998888632221 121 12 355555
Q ss_pred hHhHhccCCCcEEEecCCHHHHHHHHHHHHH----hCCCCeEEEcCCC
Q 003948 582 DVTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (784)
Q Consensus 582 dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~----~~~~Pv~irl~r~ 625 (784)
...+++.+-... +...+++++...+..|+. ...+||+|-+|..
T Consensus 123 q~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 123 QMNAAKPYAKAA-FRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp HHHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHhhhee-eecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 667788776653 334455556666666655 2468999988764
No 78
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=70.24 E-value=9.7 Score=41.35 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=57.9
Q ss_pred HHHHHHHHHhc----C-CeeEEEec--HhHHH-HHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcC-----chhhHhH
Q 003948 519 AVTFAAGLASE----G-VKPFCAIY--SSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC-----GAFDVTF 585 (784)
Q Consensus 519 ~vg~AaGlA~~----G-~~P~~~ty--s~Fl~-ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq-----~~~dla~ 585 (784)
.+..|.|+|+. | -+++++++ ..|.+ ..++. ++.++..++|+++++...++ |..++++. ...+++-
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~~d~~~~a~ 224 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG-INFAGAFKAPAIFVVQNNRF-AISTPVEKQTVAKTLAQKAV 224 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSCSCSGGGGG
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHH-HHHHHHHCcCEEEEEEcCCc-cceeccccccCCCCHHHHHH
Confidence 34455666653 2 23444443 33443 23444 37788999999999865553 22222211 1222222
Q ss_pred hccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEc
Q 003948 586 MSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (784)
Q Consensus 586 lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl 622 (784)
.-.+|++.| .=.|+.++..+++.|++ ..++|++|-.
T Consensus 225 a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 225 AAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp GTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 234565543 44589999999999986 2578998854
No 79
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=67.97 E-value=9.2 Score=42.04 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=56.2
Q ss_pred HHHHHHHHhc------CCeeEEEe-cHhHHH-HHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcC--chhhHhHhccC
Q 003948 520 VTFAAGLASE------GVKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDVTFMSCL 589 (784)
Q Consensus 520 vg~AaGlA~~------G~~P~~~t-ys~Fl~-ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq--~~~dla~lr~i 589 (784)
+..|.|+|+. ..+++|.+ =..|.+ ..++. ++.++..++|+++++...++ +..+++.. ...|++-...-
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a 245 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG-FNFAATLECPIIFFCRNNGY-AISTPTSEQYRGDGIAARGPG 245 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSSSTTGGGTGG
T ss_pred ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHH-HHHHHHHCcCEEEEEECCce-eeeecccccCCCCCHHHHHHH
Confidence 3456666653 34444444 233432 22344 37788889999999866554 22233221 12233222211
Q ss_pred CCcEEE--ecCCHHHHHHHHHHHHH---hCCCCeEEEc
Q 003948 590 PNMVVM--APSDEAELMHMVATAAV---IDDRPSCFRF 622 (784)
Q Consensus 590 Pn~~V~--~Psd~~E~~~~l~~A~~---~~~~Pv~irl 622 (784)
-|+.++ .=.|+.++..+++.|++ ..++|++|-.
T Consensus 246 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 246 YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 244443 34588999999998876 2578998754
No 80
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=66.71 E-value=14 Score=43.59 Aligned_cols=87 Identities=20% Similarity=0.151 Sum_probs=53.3
Q ss_pred eEEEecHhH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCc-CchhhHh-HhccCCCcEEE-ecC---CHHH
Q 003948 533 PFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGAFDVT-FMSCLPNMVVM-APS---DEAE 602 (784)
Q Consensus 533 P~~~tys~F-l~--ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~TH-q~~~dla-~lr~iPn~~V~-~Ps---d~~E 602 (784)
.++++..+. ++ ..++.+ +.++..++| ++++++..++ +.++++. +...|+. .++. -|+.++ .-- |..+
T Consensus 150 ~vv~i~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~~ 226 (680)
T 1gpu_A 150 YTYVFLGDGCLQEGISSEAS-SLAGHLKLGNLIAIYDDNKI-TIDGATSISFDEDVAKRYEA-YGWEVLYVENGNEDLAG 226 (680)
T ss_dssp CEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHH-HTCEEEEESCTTTCHHH
T ss_pred eEEEEECCCccchhhHHHHH-HHHHHhCCCcEEEEEECCCc-eEecccccccCccHHHHHHh-cCCeEEEEecCCCCHHH
Confidence 455554443 23 345554 678888998 7777766664 2334433 1123332 3444 378777 333 7899
Q ss_pred HHHHHHHHHHhCCCCeEEEc
Q 003948 603 LMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 603 ~~~~l~~A~~~~~~Pv~irl 622 (784)
+...++.|.+..++|++|..
T Consensus 227 l~~al~~A~~~~~~P~lI~~ 246 (680)
T 1gpu_A 227 IAKAIAQAKLSKDKPTLIKM 246 (680)
T ss_dssp HHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHHHHHHHCCCCCEEEEE
Confidence 99999998764578998765
No 81
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=66.42 E-value=7.8 Score=34.12 Aligned_cols=69 Identities=9% Similarity=0.090 Sum_probs=47.5
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh-ccCCeEEEEcCCCcCCcHHH
Q 003948 652 GDRVAILGYGS----IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGSH 721 (784)
Q Consensus 652 G~dvtIva~Gs----~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~-~~~~~vVvvEe~~~gG~gs~ 721 (784)
..+|+|.+.++ .-..|.+|.+.|++.|+..+.+|+..- |--.+.+.+.. ..+-+.|++.....||+...
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~-~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l 90 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILEN-EMLRQGLKEYSNWPTFPQLYIGGEFFGGCDIT 90 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCSSSCEEEETTEEEECHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEEEeCHHHH
Confidence 45789998884 678899999999999999999998631 11112233322 23456788877667998643
No 82
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=65.47 E-value=15 Score=43.09 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=53.5
Q ss_pred eEEEecHhH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCc-CchhhHh-HhccCCCcEEE-e--cCCHHHH
Q 003948 533 PFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGAFDVT-FMSCLPNMVVM-A--PSDEAEL 603 (784)
Q Consensus 533 P~~~tys~F-l~--ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~TH-q~~~dla-~lr~iPn~~V~-~--Psd~~E~ 603 (784)
.++++..+. ++ ..++.+ +.++..++| ++++++..++ +.++++. +..+|+. .++. -|+.++ . =.|..++
T Consensus 148 ~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~l 224 (669)
T 2r8o_A 148 YTYAFMGDGCMMEGISHEVC-SLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEA-YGWHVIRDIDGHDAASI 224 (669)
T ss_dssp CEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHH-TTCEEEEEEETTCHHHH
T ss_pred eEEEEECHhHhcchHHHHHH-HHHHHcCCCcEEEEEECCCc-EeccccccccCccHHHHHHH-CCCeEEeEECCCCHHHH
Confidence 455554443 23 345554 678888988 7777766664 2334433 1223332 4444 477776 3 3479999
Q ss_pred HHHHHHHHHhCCCCeEEEc
Q 003948 604 MHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 604 ~~~l~~A~~~~~~Pv~irl 622 (784)
..+++.|.+..++|++|..
T Consensus 225 ~~al~~a~~~~~~P~lI~~ 243 (669)
T 2r8o_A 225 KRAVEEARAVTDKPSLLMC 243 (669)
T ss_dssp HHHHHHHHHCCSSCEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEE
Confidence 9999999764578998765
No 83
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=64.89 E-value=23 Score=41.52 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=56.2
Q ss_pred eeEEEecHhH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcCc-hhhHh-HhccCCCcEEE-ec---CCHH
Q 003948 532 KPFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDVT-FMSCLPNMVVM-AP---SDEA 601 (784)
Q Consensus 532 ~P~~~tys~F-l~--ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq~-~~dla-~lr~iPn~~V~-~P---sd~~ 601 (784)
+.++++..+. ++ ..++.+ +.++..++| ++++++..++ +.+|++... .+|+. .+++ -|+.++ .- .|..
T Consensus 149 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~d~N~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 225 (673)
T 1r9j_A 149 HYTYVYCGDGCLMEGVCQEAL-SLAGHLALEKLIVIYDSNYI-SIDGSTSLSFTEQCHQKYVA-MGFHVIEVKNGDTDYE 225 (673)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHHTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHH-TTCEEEEESCTTTCHH
T ss_pred CEEEEEECcchhcccHHHHHH-HHHHHhCCCcEEEEEECCCC-ccccchhhccCHhHHHHHHH-CCCeEEEEeCCCCCHH
Confidence 3455554443 23 335554 677888987 7777776664 334444322 23333 4455 488887 44 7899
Q ss_pred HHHHHHHHHHHhCCCCeEEEcC
Q 003948 602 ELMHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 602 E~~~~l~~A~~~~~~Pv~irl~ 623 (784)
++..+++.|.+..++|++|...
T Consensus 226 ~l~~Al~~A~~~~~~P~lI~~~ 247 (673)
T 1r9j_A 226 GLRKALAEAKATKGKPKMIVQT 247 (673)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEe
Confidence 9999999987656889988653
No 84
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=62.84 E-value=19 Score=38.86 Aligned_cols=108 Identities=15% Similarity=0.060 Sum_probs=58.5
Q ss_pred eccccHHHHHHHHHHHHh----cC-CeeEEEec--HhHHHH-HHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCc-----
Q 003948 511 DVGIAEQHAVTFAAGLAS----EG-VKPFCAIY--SSFLQR-GYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH----- 577 (784)
Q Consensus 511 d~GIaE~~~vg~AaGlA~----~G-~~P~~~ty--s~Fl~r-a~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~TH----- 577 (784)
..|.-+ +.+++|.|+|+ .+ -++++++. ..|.+- ..+.+ +.++..++|+++++...++ |..+++.
T Consensus 142 ~~g~lG-~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal-~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~ 218 (367)
T 1umd_A 142 VASPIA-SHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGI-NFAAVQGAPAVFIAENNFY-AISVDYRHQTHS 218 (367)
T ss_dssp CCSSTT-TTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHH-HHHHHTTCSEEEEEEECSE-ETTEEHHHHCSS
T ss_pred CCchhh-hhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHH-HHHHHhCcCEEEEEecCCe-eeccChhhccCC
Confidence 444444 23344555554 33 23444443 334322 33433 6788899999988866553 3333321
Q ss_pred CchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEc
Q 003948 578 CGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (784)
Q Consensus 578 q~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl 622 (784)
....+++-.-.+|.+. +.-.|+.++..+++.|++ ..++|++|-.
T Consensus 219 ~d~~~~a~a~G~~~~~-Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 219 PTIADKAHAFGIPGYL-VDGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp SCSGGGGGGTTSCEEE-EETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHcCCcEEE-eCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1122222222355554 466788888887777765 3578998754
No 85
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=62.76 E-value=9.5 Score=35.30 Aligned_cols=67 Identities=15% Similarity=0.041 Sum_probs=45.8
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh-ccCCeEEEEcCCCcCCcHH
Q 003948 653 DRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGS 720 (784)
Q Consensus 653 ~dvtIva~G----s~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~-~~~~~vVvvEe~~~gG~gs 720 (784)
.+|+|.++| .....|.+|.+.|++.|+..+.+|+.. .|--.+.+.+.. ..+-+.|++.....||+..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~-d~~~~~~L~~~~G~~tvP~VfI~G~~iGG~d~ 106 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCDI 106 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC-CHHHHHHHHHHHCCCCcCEEEECCEEEEChHH
Confidence 368888887 566789999999999999999999864 121112233222 2344677887666798853
No 86
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=61.44 E-value=26 Score=41.26 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=55.7
Q ss_pred eeEEEecHhH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcCc-hhhH-hHhccCCCcEEEec---CCHHH
Q 003948 532 KPFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAP---SDEAE 602 (784)
Q Consensus 532 ~P~~~tys~F-l~--ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq~-~~dl-a~lr~iPn~~V~~P---sd~~E 602 (784)
+.++++..+. ++ .+++.+ +.++..++| ++++.+..++ +.+|+++.. ..|+ ..+++. |+.++.+ .|..+
T Consensus 173 ~~v~~i~GDG~l~eG~~~Eal-~~A~~~~L~~livI~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~ 249 (690)
T 3m49_A 173 HYTYAICGDGDLMEGVSAEAS-SLAAHLQLGRLVVLYDSNDI-SLDGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEA 249 (690)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHH
T ss_pred CeEEEEECchhhhhccHHHHH-HHHHHhCCCeEEEEEECCCe-ecccchhhccchhHHHHHHHc-CCcEEEEecCCCHHH
Confidence 3455554443 22 345554 678888987 6666666664 344554331 2232 244443 7888888 78999
Q ss_pred HHHHHHHHHHhCCCCeEEEcC
Q 003948 603 LMHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 603 ~~~~l~~A~~~~~~Pv~irl~ 623 (784)
+..+++.|.+..++|++|...
T Consensus 250 l~~Al~~a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 250 IAKAIEEAKADEKRPTLIEVR 270 (690)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEE
Confidence 999999886546889987653
No 87
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=58.53 E-value=31 Score=40.37 Aligned_cols=89 Identities=11% Similarity=0.045 Sum_probs=52.0
Q ss_pred eeEEEecHhH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcCc-hhhH-hHhccCCCcEEEec---CCHHH
Q 003948 532 KPFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAP---SDEAE 602 (784)
Q Consensus 532 ~P~~~tys~F-l~--ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq~-~~dl-a~lr~iPn~~V~~P---sd~~E 602 (784)
+.++++..+. ++ ..++.+ +.++..++| ++++.+..++ +.+|++... ..|+ ..+++. |+.++.+ .|..+
T Consensus 149 ~~v~~i~GDG~l~eG~~~Eal-~~A~~~~L~~livi~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 225 (663)
T 3kom_A 149 HHTYVFLGDGCLMEGVSHEAC-SLAGTLGLNKLVAFWDDNNI-SIDGDTKGWFSDNTPERFRAY-GWHVIENVDGHDFVA 225 (663)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHHTCTTEEEEEEECC------CGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECchhhhhchHHHHH-HHHHHhCCCeEEEEEECCCc-ccccchhhhcchhHHHHHHHC-CCeEEEEEcCCCHHH
Confidence 4455555443 22 345554 678888998 6666666554 333443321 1232 344553 7877733 37899
Q ss_pred HHHHHHHHHHhCCCCeEEEcC
Q 003948 603 LMHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 603 ~~~~l~~A~~~~~~Pv~irl~ 623 (784)
+..+++.|.+..++|++|...
T Consensus 226 l~~al~~A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 226 IEKAINEAHSQQQKPTLICCK 246 (663)
T ss_dssp HHHHHHHHHHCSSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEe
Confidence 999999986545889988653
No 88
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=57.87 E-value=17 Score=40.11 Aligned_cols=99 Identities=11% Similarity=-0.027 Sum_probs=54.3
Q ss_pred HHHHHHHhc------CCeeEEEe-cHhHHH-HHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCcC---chhhH---hHh
Q 003948 521 TFAAGLASE------GVKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC---GAFDV---TFM 586 (784)
Q Consensus 521 g~AaGlA~~------G~~P~~~t-ys~Fl~-ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~THq---~~~dl---a~l 586 (784)
..|.|+|+. +.++++.+ =..|.+ ..++. ++.++..++|+++++...++ |..+++.. ...|+ +-.
T Consensus 188 p~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~Vv~NN~~-gi~~~~~~~~~~~~d~a~~a~a 265 (407)
T 1qs0_A 188 VQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTA-LTFAHVYRAPVILNVVNNQW-AISTFQAIAGGESTTFAGRGVG 265 (407)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH-HHHHHHHTCCEEEEEEECSE-ETTEEGGGGTTTTCCSTHHHHH
T ss_pred hHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHH-HHHHHHHCcCEEEEEECCCc-ceeeccccccCCCCCHHHHHHH
Confidence 455566553 33444444 233432 22344 37788899999988865553 22222221 12232 211
Q ss_pred ccCCCcEEEecCCHHHHHHHHHHHHHh---CCCCeEEEc
Q 003948 587 SCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRF 622 (784)
Q Consensus 587 r~iPn~~V~~Psd~~E~~~~l~~A~~~---~~~Pv~irl 622 (784)
-.+|.+. +.=.|+.++..+++.|++. .++|++|-.
T Consensus 266 ~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 266 CGIASLR-VDGNDFVAVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp TTCEEEE-EETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred cCCeEEE-EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2344443 2445788999999988763 578988754
No 89
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=57.69 E-value=12 Score=33.04 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=46.5
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHH---HHHHh-ccCCeEEEEcCCCcCCcHH
Q 003948 652 GDRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL---IRQLA-NEHEILITVEEGSVGGFGS 720 (784)
Q Consensus 652 G~dvtIva~G----s~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~---i~~~~-~~~~~vVvvEe~~~gG~gs 720 (784)
..+|+|.+-| +.-..|.+|.+.|++.|+..+.+|+.. |.+. +.+.. ..+-+.|++.....||+..
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~----d~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~ 87 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS----DEEVRQGLKAYSSWPTYPQLYVSGELIGGLDI 87 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG----CHHHHHHHHHHHTCCSSCEEEETTEEEECHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC----CHHHHHHHHHHHCCCCCCEEEECCEEEecHHH
Confidence 4578888877 445789999999999999999999864 3333 33322 2345678888766799763
No 90
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=56.48 E-value=21 Score=30.63 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=47.7
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhc-----cCCeEEEEcCCC-cCCcH-HHHHHHH
Q 003948 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-----EHEILITVEEGS-VGGFG-SHVCHFL 726 (784)
Q Consensus 654 dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~-----~~~~vVvvEe~~-~gG~g-s~V~~~l 726 (784)
+|+|.+. +.-..|..|.+.|++.||..+.+|+.. |.+...++.+ .+-+.|++.++. ..|+. .+|.+.|
T Consensus 5 ~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L 79 (92)
T 2lqo_A 5 ALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKL 79 (92)
T ss_dssp CEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHHH
T ss_pred cEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHH
Confidence 5666664 445679999999999999999999863 4444433322 234778887765 45653 4666777
Q ss_pred Hhc
Q 003948 727 TLS 729 (784)
Q Consensus 727 ~~~ 729 (784)
.+-
T Consensus 80 ~el 82 (92)
T 2lqo_A 80 VKI 82 (92)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 91
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=55.66 E-value=9.5 Score=33.36 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=45.0
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhc-cCCeEEEEcCCCcCCcH
Q 003948 652 GDRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEEGSVGGFG 719 (784)
Q Consensus 652 G~dvtIva~G----s~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~-~~~~vVvvEe~~~gG~g 719 (784)
..+|+|.+.| ..-..|.+|.+.|++.|+....+|+.. .|--.+.+.+... .+-++|+++....||+.
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~vP~ifi~g~~igG~d 85 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKTFSNWPTYPQLYVRGDLVGGLD 85 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS-CHHHHHHHHHHHSCCSSCEEECSSSEEECHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEEEcCHH
Confidence 4468899888 556789999999999999999999864 1111122332222 33356777765678875
No 92
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=55.55 E-value=34 Score=39.94 Aligned_cols=87 Identities=18% Similarity=0.145 Sum_probs=53.4
Q ss_pred eeEEEecHhH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcCc-hhhH-hHhccCCCcEEEecC---CHHH
Q 003948 532 KPFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAPS---DEAE 602 (784)
Q Consensus 532 ~P~~~tys~F-l~--ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq~-~~dl-a~lr~iPn~~V~~Ps---d~~E 602 (784)
+.++++..+. ++ ..++.+ +.++..++| ++++++..++ +.++++... ..|+ ..++. -|+.++.+. |..+
T Consensus 151 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~ 227 (651)
T 2e6k_A 151 HYTYVLASDGDLMEGVSGEAA-SLAGHWGLSKLIVFWDDNRI-SIDGPTDLAFTEDVLARYRA-YGWQTLRVEDVNDLEA 227 (651)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECCE-ETTEEGGGTCCSCHHHHHHH-TTCEEEEESCTTCHHH
T ss_pred CEEEEEEChhhhchhHHHHHH-HHHHHcCCCeEEEEEECCCc-ccccccccccCccHHHHHHh-CCCeEEEEeCCCCHHH
Confidence 3455554443 23 345554 678888988 7777766664 222332211 2333 34454 488877333 7999
Q ss_pred HHHHHHHHHHhCCCCeEEEc
Q 003948 603 LMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 603 ~~~~l~~A~~~~~~Pv~irl 622 (784)
+..+++.|.+ .++|++|..
T Consensus 228 l~~al~~a~~-~~~P~lI~~ 246 (651)
T 2e6k_A 228 LRKAIKLAKL-DERPTLIAV 246 (651)
T ss_dssp HHHHHHHHHH-SSSCEEEEE
T ss_pred HHHHHHHHHH-CCCCEEEEE
Confidence 9999999976 788998765
No 93
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=52.33 E-value=40 Score=39.50 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=53.2
Q ss_pred eEEEecHhH-HH--HHHHHHHHHhhcCCC-CEEEEeeCCCCCCCCCCCcC-chhhH-hHhccCCCcEEEec-C---CHHH
Q 003948 533 PFCAIYSSF-LQ--RGYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC-GAFDV-TFMSCLPNMVVMAP-S---DEAE 602 (784)
Q Consensus 533 P~~~tys~F-l~--ra~dQi~~~~a~~~l-pV~~v~~~~G~~G~dG~THq-~~~dl-a~lr~iPn~~V~~P-s---d~~E 602 (784)
.++++..+. ++ ..++.+ +.++..++ |++++++..++ +.+|++.. ...|+ ..+++ -|+.++.+ - |..+
T Consensus 161 ~v~~i~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~~ 237 (675)
T 1itz_A 161 YTYVILGDGCQMEGIANEAC-SLAGHWGLGKLIAFYDDNHI-SIDGDTEIAFTEDVSTRFEA-LGWHTIWVKNGNTGYDD 237 (675)
T ss_dssp CEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCSCHHHHHHH-TTCEEEEESCTTTCHHH
T ss_pred EEEEEECHhHhchhHHHHHH-HHHHHhCCCcEEEEEECCCc-cCCCChhhhcChhHHHHHHh-CCCEEEEEecCCCCHHH
Confidence 455554443 23 345554 67888898 57887766654 22333321 12233 34555 38888733 3 7889
Q ss_pred HHHHHHHHHHhCCCCeEEEcC
Q 003948 603 LMHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 603 ~~~~l~~A~~~~~~Pv~irl~ 623 (784)
+..+++.|.+..++|++|...
T Consensus 238 l~~al~~a~~~~~~P~lI~~~ 258 (675)
T 1itz_A 238 IRAAIKEAKAVTDKPTLIKVT 258 (675)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEEe
Confidence 999999987646789987653
No 94
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=50.47 E-value=66 Score=37.18 Aligned_cols=102 Identities=11% Similarity=0.317 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHH-HHHHhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHH
Q 003948 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEA-MNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSA 336 (784)
Q Consensus 258 ~ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EA-ln~A~~~~~nlivIv~dN~~~s~~t~~~dg~~~~v~~l~~~ 336 (784)
.+++|.|+|++ | -+.+++..++... .++|- ++.++..+.|+++++..-+.+. .||++- .
T Consensus 373 ~~~~a~G~A~~----G-~rp~~~~~~~F~~---~a~dqi~~~~a~~~~pvv~~~~~~g~~g-----~~G~tH--~----- 432 (621)
T 2o1s_A 373 AVTFAAGLAIG----G-YKPIVAIYSTFLQ---RAYDQVLHDVAIQKLPVLFAIDRAGIVG-----ADGQTH--Q----- 432 (621)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEETTGGG---GGHHHHHHTTTTTTCCCEEEEESCBCCC-----TTCGGG--C-----
T ss_pred HHHHHHHHHHC----C-CEEEEEehHhHHH---HHHHHHHHHHHhcCCCEEEEEECCccCC-----CCCCcc--C-----
Confidence 45667777764 4 4667788888752 56765 5668888999999996655321 122210 0
Q ss_pred HHHhhhhhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHhhhccCCCchhhhhhc-CCeEEeecCCCCHHHHHHHHHHhhc
Q 003948 337 LSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEEL-GLYYIGPVDGHNVEDLVTIFQRVKE 415 (784)
Q Consensus 337 L~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~-G~~~i~~vDGhd~~~l~~al~~ak~ 415 (784)
+.++++ ++... ||.++.| .|..++..+++.+.+
T Consensus 433 --------------------------~~~d~~-----------------~~~~iP~l~v~~P---~d~~e~~~~l~~a~~ 466 (621)
T 2o1s_A 433 --------------------------GAFDLS-----------------YLRCIPEMVIMTP---SDENECRQMLYTGYH 466 (621)
T ss_dssp --------------------------BCSHHH-----------------HTTTSTTCEEECC---SSHHHHHHHHHHHHH
T ss_pred --------------------------chHHHH-----------------HHhcCCCCEEEec---CCHHHHHHHHHHHHH
Confidence 012222 25555 8888777 677787877877766
Q ss_pred CCCCCcEEEEE
Q 003948 416 MPAPGPVLIHV 426 (784)
Q Consensus 416 ~~~~~P~lI~v 426 (784)
. .++|++|-.
T Consensus 467 ~-~~~Pv~i~~ 476 (621)
T 2o1s_A 467 Y-NDGPSAVRY 476 (621)
T ss_dssp C-CSSCEEEEC
T ss_pred c-CCCCEEEEe
Confidence 3 378988765
No 95
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=50.24 E-value=22 Score=42.07 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=54.7
Q ss_pred eeEEEecHh--HHH-HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcCc-hhhH-hHhccCCCcEEEec---CCHHH
Q 003948 532 KPFCAIYSS--FLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAP---SDEAE 602 (784)
Q Consensus 532 ~P~~~tys~--Fl~-ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq~-~~dl-a~lr~iPn~~V~~P---sd~~E 602 (784)
+.++++..+ |.. ..++.+ +.++..++| ++++++..++ +.+|+++.. ..|+ ..+++. |+.++.| .|..+
T Consensus 188 ~~vv~i~GDG~l~eG~~~Eal-~~A~~~~L~~livI~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 264 (711)
T 3uk1_A 188 HHTYVFLGDGCLMEGISHEAC-SLAGTLKLNKLIALYDDNGI-SIDGDVVNWFHDDTPKRFEAY-GWNVIPNVNGHDVDA 264 (711)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECCcchhhccHHHHH-HHHHHhCCCcEEEEEECCCc-ccccchhhhcCCCHHHHHHHc-CCcEEEEeCCCCHHH
Confidence 355555444 331 445554 678899998 7777766664 233444321 2232 344553 7777765 58999
Q ss_pred HHHHHHHHHHhCCCCeEEEcC
Q 003948 603 LMHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 603 ~~~~l~~A~~~~~~Pv~irl~ 623 (784)
+..+++.|.+ .++|++|...
T Consensus 265 l~~Al~~A~~-~~~P~lI~v~ 284 (711)
T 3uk1_A 265 IDAAIAKAKR-SDKPSLICCK 284 (711)
T ss_dssp HHHHHHHHTT-CSSCEEEEEE
T ss_pred HHHHHHHHHh-CCCCEEEEEc
Confidence 9999999865 6889988653
No 96
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=48.47 E-value=26 Score=37.99 Aligned_cols=100 Identities=20% Similarity=0.225 Sum_probs=55.2
Q ss_pred HHHHHHHHhc----C-CeeEEEecHh--HHH-HHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCC--cCchhhHhH-hcc
Q 003948 520 VTFAAGLASE----G-VKPFCAIYSS--FLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT--HCGAFDVTF-MSC 588 (784)
Q Consensus 520 vg~AaGlA~~----G-~~P~~~tys~--Fl~-ra~dQi~~~~a~~~lpV~~v~~~~G~~G~dG~T--Hq~~~dla~-lr~ 588 (784)
+..|.|+|+. | -+++++++.+ +.+ ..++. ++.++..++|+++++...++ |...++ .....++.- .-.
T Consensus 146 lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ea-ln~A~~~~lpvi~vv~NN~~-g~~t~~~~~~~~~~~~~ra~g 223 (365)
T 2ozl_A 146 VPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA-YNMAALWKLPCIFICENNRY-GMGTSVERAAASTDYYKRGDF 223 (365)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEHHHHCSCCCGGGTTTT
T ss_pred hHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHH-HHHHHHHCcCEEEEEECCCc-ccCCCcccccCCCCHHHHhCC
Confidence 3556666653 2 3344444332 332 23444 37888999999999865553 111110 111112111 113
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEc
Q 003948 589 LPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (784)
Q Consensus 589 iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl 622 (784)
+|++.| .=.|+.++..+++.|++ ..++|++|-.
T Consensus 224 ~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 224 IPGLRV-DGMDILCVREATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp SCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 565543 44589999999998875 3578998754
No 97
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=48.00 E-value=24 Score=29.16 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhcCCCcEEEeeccccCC-CcHHH---HHHHh-cc-----CCeEEEEcCC-CcCCcHH
Q 003948 663 IVQQCVLAANMLKSQDISVTVADARFCKP-LDTDL---IRQLA-NE-----HEILITVEEG-SVGGFGS 720 (784)
Q Consensus 663 ~v~~aleAae~L~~~GI~v~VId~~slkP-lD~e~---i~~~~-~~-----~~~vVvvEe~-~~gG~gs 720 (784)
.-..|.+|.+.|++.|++.+.+|+..... -+.+. +.+.. .. +-+.|+++++ ..||+..
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d~ 81 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQ 81 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHH
T ss_pred cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHHH
Confidence 44689999999999999999999974321 23333 33332 22 3467777444 4788764
No 98
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=47.75 E-value=62 Score=34.25 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=27.4
Q ss_pred hhhc-CCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 003948 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVT 428 (784)
Q Consensus 387 fea~-G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T 428 (784)
++.. ||.++.| .|..+....++.+.+ .++|++|-..+
T Consensus 138 l~~iP~l~V~~P---sd~~e~~~~l~~A~~--~~~Pv~i~~p~ 175 (338)
T 1qs0_B 138 FTQVCGLRTVMP---SNPYDAKGLLIASIE--CDDPVIFLEPK 175 (338)
T ss_dssp HTTSTTCEEECC---CSHHHHHHHHHHHHH--SSSCEEEEEEG
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--cCCcEEEEEch
Confidence 4555 8888777 678888888887776 37899987654
No 99
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=45.84 E-value=43 Score=38.88 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=20.8
Q ss_pred ecCCHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 596 APSDEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 596 ~Psd~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
...|..++...++.|.+ .++|++|..
T Consensus 260 dG~d~~~l~~al~~A~~-~~~P~lI~v 285 (629)
T 2o1x_A 260 DGHNVQELVWLLERLVD-LDGPTILHI 285 (629)
T ss_dssp ESSCHHHHHHHHHHHTT-SSSEEEEEE
T ss_pred CCcCHHHHHHHHHHHHh-cCCCEEEEE
Confidence 45689999999999965 578988754
No 100
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=45.34 E-value=1e+02 Score=35.72 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcCCcccchhhHHHHHHHhhcCCCEEEEEECCC
Q 003948 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (784)
Q Consensus 259 ls~AvG~AlA~~~~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIv~dN~ 314 (784)
+++|.|+|++ |....+++.++++.. .+++.+.+++..+.|+++++..-+
T Consensus 368 v~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g 416 (616)
T 3mos_A 368 VSIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCG 416 (616)
T ss_dssp HHHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBS
T ss_pred HHHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCC
Confidence 5566666654 433456678999964 789999998888899998877655
No 101
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=44.33 E-value=30 Score=30.99 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=47.4
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHhcCCCc-EEEeeccccCCCcHHH---HHHHh-ccCCeEEEEcCCCcCCcHHH
Q 003948 652 GDRVAILGYGS----IVQQCVLAANMLKSQDIS-VTVADARFCKPLDTDL---IRQLA-NEHEILITVEEGSVGGFGSH 721 (784)
Q Consensus 652 G~dvtIva~Gs----~v~~aleAae~L~~~GI~-v~VId~~slkPlD~e~---i~~~~-~~~~~vVvvEe~~~gG~gs~ 721 (784)
..+|+|++.++ .-..|.+|.+.|++.|+. .+.+|+.. |.+. +.+.. ..+-+.|+|.....||+...
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~----d~~~~~~l~~~tg~~tvP~vfI~g~~IGG~d~l 93 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD----DPELRQGIKDYSNWPTIPQVYLNGEFVGGCDIL 93 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSS----CHHHHHHHHHHHTCCSSCEEEETTEEEESHHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCC----CHHHHHHHHHHhCCCCcCeEEECCEEEeChHHH
Confidence 45799999884 678899999999999995 99999862 3333 22221 33457788887668998643
No 102
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=43.46 E-value=36 Score=39.61 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcC------------CeeEEEecHhH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcC-chh
Q 003948 519 AVTFAAGLASEG------------VKPFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAF 581 (784)
Q Consensus 519 ~vg~AaGlA~~G------------~~P~~~tys~F-l~--ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq-~~~ 581 (784)
.++.|.|+|+.- -+.++++..+. ++ .+++.+ +.++..++| ++++.+..++ +.+|++.. ...
T Consensus 119 gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal-~~A~~~~L~~livi~nnN~~-~i~~~~~~~~~~ 196 (632)
T 3l84_A 119 GVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEAC-SLAGLHKLDNFILIYDSNNI-SIEGDVGLAFNE 196 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCC
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHH-HHHHHcCCCcEEEEEECCCc-ccccchhhhcCh
Confidence 355666666531 24455554443 22 445554 678888987 7777766664 22333322 112
Q ss_pred hH-hHhccCCCcEEEecC---CHHHHHHHHHHHHHhCCCCeEEEc
Q 003948 582 DV-TFMSCLPNMVVMAPS---DEAELMHMVATAAVIDDRPSCFRF 622 (784)
Q Consensus 582 dl-a~lr~iPn~~V~~Ps---d~~E~~~~l~~A~~~~~~Pv~irl 622 (784)
|+ ..+++. |+.++ +. |..++..+++.|.+ .++|++|..
T Consensus 197 d~~~~~~a~-G~~~~-~vdGhd~~~l~~al~~A~~-~~~P~lI~v 238 (632)
T 3l84_A 197 NVKMRFEAQ-GFEVL-SINGHDYEEINKALEQAKK-STKPCLIIA 238 (632)
T ss_dssp CHHHHHHHT-TCEEE-EEETTCHHHHHHHHHHHHT-CSSCEEEEE
T ss_pred hHHHHHHHc-CCeEE-EEeeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22 345554 78777 44 78999999999865 788998764
No 103
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=42.10 E-value=27 Score=31.39 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=46.5
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHhcCCCc---EEEeeccccCCCcHHHHHHHh----ccCCeEEEEcCCCcCCcHH
Q 003948 652 GDRVAILGYGS----IVQQCVLAANMLKSQDIS---VTVADARFCKPLDTDLIRQLA----NEHEILITVEEGSVGGFGS 720 (784)
Q Consensus 652 G~dvtIva~Gs----~v~~aleAae~L~~~GI~---v~VId~~slkPlD~e~i~~~~----~~~~~vVvvEe~~~gG~gs 720 (784)
..+|+|++.|+ .-..|..|.+.|++.|+. ...+|+.. |.+....+. ..+-+.|+|.....||+..
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~----~~~~~~~l~~~sg~~tvP~vfI~g~~iGG~d~ 90 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE----DPELREGIKEFSEWPTIPQLYVNKEFIGGCDV 90 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT----CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC----CHHHHHHHHHHhCCCCCCeEEECCEEEecHHH
Confidence 45789999884 677899999999999998 88888752 333322221 2345678888766799864
Q ss_pred H
Q 003948 721 H 721 (784)
Q Consensus 721 ~ 721 (784)
.
T Consensus 91 l 91 (121)
T 3gx8_A 91 I 91 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 104
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=39.81 E-value=54 Score=31.55 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=40.8
Q ss_pred hHHHHHHHHHH-HhcCCCcEEEeeccccCC--------C--cHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHH
Q 003948 663 IVQQCVLAANM-LKSQDISVTVADARFCKP--------L--DTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLT 727 (784)
Q Consensus 663 ~v~~aleAae~-L~~~GI~v~VId~~slkP--------l--D~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~ 727 (784)
.-..+..+++. |++.|.+++++|+.-+.. . +.+.+.+.+.....+|+.=--+.+++...+..++.
T Consensus 18 t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld 93 (197)
T 2vzf_A 18 TAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLD 93 (197)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHH
Confidence 44556666777 887899999999875421 1 22334445556666666544445777777777664
No 105
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=39.42 E-value=94 Score=33.02 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEE-EcCCcccchhhHHHHHHHhh---------cCCCEEEEEECCCC
Q 003948 258 SISAGLGMAVARDILGKNNNVISV-IGDGAMTAGQAYEAMNNAGF---------LDANLIVVLNDNKQ 315 (784)
Q Consensus 258 ~ls~AvG~AlA~~~~g~~~~Vv~v-iGDGal~eG~~~EAln~A~~---------~~~nlivIv~dN~~ 315 (784)
.++.|.|+|++ | -+.++++ .+|.. ..+++.+.+.+. .++|+++++.. +.
T Consensus 74 ~v~~a~G~A~~----G-~rp~~~~~f~~F~---~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~ 132 (341)
T 2ozl_B 74 FAGIAVGAAMA----G-LRPICEFMTFNFS---MQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GA 132 (341)
T ss_dssp HHHHHHHHHHT----T-CEEEEECSSGGGG---GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SC
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHHHH---HHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cC
Confidence 46667777764 3 3445543 88887 368888876442 67999999984 63
No 106
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=39.35 E-value=71 Score=37.65 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=54.3
Q ss_pred eEEEecHhH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCcC-chhhH-hHhccCCCcEEEec---CCHHHH
Q 003948 533 PFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAFDV-TFMSCLPNMVVMAP---SDEAEL 603 (784)
Q Consensus 533 P~~~tys~F-l~--ra~dQi~~~~a~~~lp-V~~v~~~~G~~G~dG~THq-~~~dl-a~lr~iPn~~V~~P---sd~~E~ 603 (784)
.++++..+. ++ ..+|.+ +.++..++| ++++++..++ +.+|++.. ..+|+ ..+++. |+.++.. .|..++
T Consensus 170 ~v~~~~GDG~l~eG~~~EAl-~~A~~~~L~nli~i~d~N~~-si~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~al 246 (700)
T 3rim_A 170 YIYVIASDGDIEEGVTSEAS-SLAAVQQLGNLIVFYDRNQI-SIEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVGI 246 (700)
T ss_dssp CEEEEEEHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHHH
T ss_pred eEEEEECCcccccChHHHHH-HHHHHcCCCcEEEEEECCCc-ccccchhhccchhHHHHHHHc-CCeEEEECCCCCHHHH
Confidence 444454443 22 335554 778899997 8888876664 22333321 12232 234443 7777665 589999
Q ss_pred HHHHHHHHHhCCCCeEEEcC
Q 003948 604 MHMVATAAVIDDRPSCFRFP 623 (784)
Q Consensus 604 ~~~l~~A~~~~~~Pv~irl~ 623 (784)
..+++.|....++|++|...
T Consensus 247 ~~Al~~A~~~~~~P~lI~~~ 266 (700)
T 3rim_A 247 EEAIANAQAVTDRPSFIALR 266 (700)
T ss_dssp HHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEE
Confidence 99999986646889988653
No 107
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=38.45 E-value=1.2e+02 Score=32.75 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEE-EcCCcccchhhHHHHHH-Hhhc--------CCCEEEEEECCC
Q 003948 258 SISAGLGMAVARDILGKNNNVISV-IGDGAMTAGQAYEAMNN-AGFL--------DANLIVVLNDNK 314 (784)
Q Consensus 258 ~ls~AvG~AlA~~~~g~~~~Vv~v-iGDGal~eG~~~EAln~-A~~~--------~~nlivIv~dN~ 314 (784)
.++.|.|+|++ | -+.++++ ++|... .+++.+.+ ++.. ++|+++++..-+
T Consensus 110 ~v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 110 ILGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp HHHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 46667777764 4 3445555 889762 68888865 5544 899999887554
No 108
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=35.87 E-value=1.1e+02 Score=30.36 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHH
Q 003948 665 QQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLT 727 (784)
Q Consensus 665 ~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~ 727 (784)
..+.++++.|++.|.+++++|+.. .+|.+...+.++....||+.=--..+++...+..++.
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD 107 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQ--GYDIESEIENYLWADTIIYQMPAWWMGEPWILKKYID 107 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECChHhccCCHHHHHHHH
Confidence 344456777878899999999974 6787777777888888777765455777777777664
No 109
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=35.77 E-value=65 Score=32.66 Aligned_cols=64 Identities=17% Similarity=0.027 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCCcEEEeeccccCCCc--------HHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHh
Q 003948 665 QQCVLAANMLKSQDISVTVADARFCKPLD--------TDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTL 728 (784)
Q Consensus 665 ~~aleAae~L~~~GI~v~VId~~slkPlD--------~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~ 728 (784)
..+..+++.+++.|++++++|+.-+..++ .+.+.+.+.....+|++=--+.+++...+..++..
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~ 123 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDW 123 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHH
Confidence 44555677777789999999998653111 34455566666766666554568888888777753
No 110
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=35.70 E-value=41 Score=28.83 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=42.7
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh--ccCCeEEEEcCCCcCCcHHH
Q 003948 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA--NEHEILITVEEGSVGGFGSH 721 (784)
Q Consensus 653 ~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~--~~~~~vVvvEe~~~gG~gs~ 721 (784)
.+|+|.+. ..-..|.+|.+.|++.|+..+.+|+..-.+ -.+.+.+.. ..+-+.|++.....||+...
T Consensus 16 ~~v~vy~~-~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~-~~~~l~~~~~g~~~vP~ifi~g~~igG~d~l 84 (99)
T 3qmx_A 16 AKIEIYTW-STCPFCMRALALLKRKGVEFQEYCIDGDNE-AREAMAARANGKRSLPQIFIDDQHIGGCDDI 84 (99)
T ss_dssp CCEEEEEC-TTCHHHHHHHHHHHHHTCCCEEEECTTCHH-HHHHHHHHTTTCCCSCEEEETTEEEESHHHH
T ss_pred CCEEEEEc-CCChhHHHHHHHHHHCCCCCEEEEcCCCHH-HHHHHHHHhCCCCCCCEEEECCEEEeChHHH
Confidence 46777664 445789999999999999999999864211 112233322 22346677776557887643
No 111
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=34.53 E-value=52 Score=30.18 Aligned_cols=107 Identities=11% Similarity=0.091 Sum_probs=62.7
Q ss_pred cEEEEEechhHH-HHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHhcCCC
Q 003948 654 RVAILGYGSIVQ-QCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGIL 732 (784)
Q Consensus 654 dvtIva~Gs~v~-~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~~g~~ 732 (784)
++.+-+.|+..+ .--.|.+.|++.||++. -..-++++.+.+ .....||+++++. ..+... .
T Consensus 31 ~~~v~SAGt~~~~~~p~a~~~l~~~Gid~s---~~~sr~l~~~~~----~~~D~Ii~m~~~~---------~~~~p~--~ 92 (139)
T 1jl3_A 31 EWKVYSAGIEAHGLNPNAVKAMKEVGIDIS---NQTSDIIDSDIL----NNADLVVTLCGDA---------ADKCPM--T 92 (139)
T ss_dssp TEEEEEEESSCCCCCHHHHHHHHHTTCCCT---TCCCCBCCHHHH----TTCSEEEECSHHH---------HHHCCC--C
T ss_pred CEEEEcCcCCCCCCCHHHHHHHHHcCCCcc---cCccCcCCHHHh----hcCCEEEEeCchH---------HhhCCC--C
Confidence 355555555432 11235556777788653 223456666544 3567899987642 111111 1
Q ss_pred CCCcceEEeecCcccccCCCHHHHHHHcCCCHHHHHHHHHHHhcCC
Q 003948 733 DGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP 778 (784)
Q Consensus 733 ~~~~~~~~lg~~d~f~~~g~~~elle~~gl~~~~I~~~i~~ll~~~ 778 (784)
..........++|.|...|..++.++.|.-.-+.|.+++..++.+.
T Consensus 93 ~~~~~~~~~~i~DP~~~~g~~~e~~~~f~~~~~~I~~~i~~ll~~~ 138 (139)
T 1jl3_A 93 PPHVKREHWGFDDPARAQGTEEEKWAFFQRVRDEIGNRLKEFAETG 138 (139)
T ss_dssp CTTSEEEECCCCCGGGCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceEEeccCCCCcccCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1122333557788776557777777788778888999998888654
No 112
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=34.19 E-value=77 Score=31.50 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHhcC-CCcEEEeeccccCC---------------------CcHHHHHHHhccCCeEEEEcCCCcCCcHH
Q 003948 663 IVQQCVLAANMLKSQ-DISVTVADARFCKP---------------------LDTDLIRQLANEHEILITVEEGSVGGFGS 720 (784)
Q Consensus 663 ~v~~aleAae~L~~~-GI~v~VId~~slkP---------------------lD~e~i~~~~~~~~~vVvvEe~~~gG~gs 720 (784)
....+..+++.|++. |.+++++|+.-+.+ -|.+.+.+.+...+.||+.=--+.+++..
T Consensus 17 T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~ 96 (242)
T 1sqs_A 17 TLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSV 96 (242)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCH
Confidence 345556667778776 99999999875421 13344555566677777665545688888
Q ss_pred HHHHHHHh
Q 003948 721 HVCHFLTL 728 (784)
Q Consensus 721 ~V~~~l~~ 728 (784)
.+..++..
T Consensus 97 ~lK~~iDr 104 (242)
T 1sqs_A 97 DTKNFIER 104 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777754
No 113
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=32.58 E-value=38 Score=28.36 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhc---cCCeEEEEcCCCcCCcHHH
Q 003948 667 CVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN---EHEILITVEEGSVGGFGSH 721 (784)
Q Consensus 667 aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~---~~~~vVvvEe~~~gG~gs~ 721 (784)
|.+|.+.|++.|+..+.+|+.. .|-..+.+.+... .+-+.|++++...||+...
T Consensus 21 ~~~ak~~L~~~~i~~~~~di~~-~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~l 77 (93)
T 1t1v_A 21 QSEVTRILDGKRIQYQLVDISQ-DNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELF 77 (93)
T ss_dssp HHHHHHHHHHTTCCCEEEETTS-CHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHH
T ss_pred HHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHHH
Confidence 3888899999999999999963 2212233433332 1346888887767987643
No 114
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=31.89 E-value=1.1e+02 Score=32.37 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=26.3
Q ss_pred hhhc-CCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 003948 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVT 428 (784)
Q Consensus 387 fea~-G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~T 428 (784)
+..+ ||.++.| .|..+....++.+.+ .++|++|-...
T Consensus 154 l~~iP~l~V~~P---sd~~e~~~~l~~a~~--~~~Pv~i~~p~ 191 (342)
T 2bfd_B 154 FAHCPGIKVVIP---RSPFQAKGLLLSCIE--DKNPCIFFEPK 191 (342)
T ss_dssp HHTSTTCEEECC---SSHHHHHHHHHHHHH--SSSCEEEEEEG
T ss_pred HhcCCCcEEEee---CCHHHHHHHHHHHHh--cCCcEEEEecc
Confidence 3444 7877767 677888888877766 37899986553
No 115
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=31.15 E-value=1.1e+02 Score=29.77 Aligned_cols=63 Identities=2% Similarity=0.017 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEeeccccCCCcH----------HHHHHHhccCCeEEEEcCCCcCCcHHHHHHHH
Q 003948 664 VQQCVLAANMLKSQDISVTVADARFCKPLDT----------DLIRQLANEHEILITVEEGSVGGFGSHVCHFL 726 (784)
Q Consensus 664 v~~aleAae~L~~~GI~v~VId~~slkPlD~----------e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l 726 (784)
.....+++..+.+.|.+++++|+.-+-.++. +.+++.++....+|++---+.+++...+..++
T Consensus 18 ~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn~s~pg~LKn~i 90 (190)
T 3u7r_A 18 NHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYNRSYPGMIKNAI 90 (190)
T ss_dssp HHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBTTBCCHHHHHHH
T ss_pred HHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhcccCCHHHHHHH
Confidence 3444445555556789999999876422322 23556666676666665434466665555544
No 116
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=31.08 E-value=77 Score=30.05 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=40.2
Q ss_pred chhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHH-------------HHHHHhccCCeEEEEcCCCcCCcHHHHHHHHH
Q 003948 661 GSIVQQCVLAANMLKSQDISVTVADARFCKPLDTD-------------LIRQLANEHEILITVEEGSVGGFGSHVCHFLT 727 (784)
Q Consensus 661 Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e-------------~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~ 727 (784)
|..-..+..+++.|++.|++++++|+... +.+.- ...+.+.+.+.||+.=--+.+++...+..++.
T Consensus 17 g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld 95 (200)
T 2a5l_A 17 GATAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLD 95 (200)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHHHHHH
Confidence 44445666667778778999999999764 11100 11233445566665544345777777777775
Q ss_pred h
Q 003948 728 L 728 (784)
Q Consensus 728 ~ 728 (784)
.
T Consensus 96 ~ 96 (200)
T 2a5l_A 96 G 96 (200)
T ss_dssp T
T ss_pred H
Confidence 4
No 117
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=30.78 E-value=87 Score=28.17 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=43.8
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHhcCCC-cEEEeeccccCCCcHHHHHHHh-----ccCCeEEEEcCCCcCCcHH
Q 003948 652 GDRVAILGYGS----IVQQCVLAANMLKSQDI-SVTVADARFCKPLDTDLIRQLA-----NEHEILITVEEGSVGGFGS 720 (784)
Q Consensus 652 G~dvtIva~Gs----~v~~aleAae~L~~~GI-~v~VId~~slkPlD~e~i~~~~-----~~~~~vVvvEe~~~gG~gs 720 (784)
..+|+|++-|+ .-..|.+|.+.|.+.|+ ....+|+.. |. .+++.+ ..+-+-|+|.....||...
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~----~~-~~r~~l~~~sg~~TvPqIFI~g~~IGG~Dd 92 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD----DP-ELRQGIKDYSNWPTIPQVYLNGEFVGGCDI 92 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTS----CH-HHHHHHHHHHTCCSSCEEEETTEEEECHHH
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccC----CH-HHHHHHHHhccCCCCCeEeECCEEECCHHH
Confidence 35788998885 46789999999999998 578888742 22 233332 2344567787766798753
No 118
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=30.65 E-value=1.4e+02 Score=31.21 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=23.4
Q ss_pred CCeEEeecCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 003948 391 GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVV 427 (784)
Q Consensus 391 G~~~i~~vDGhd~~~l~~al~~ak~~~~~~P~lI~v~ 427 (784)
||.++.| .|..+....++.+.+ .++|++|-..
T Consensus 141 ~l~V~~P---sd~~e~~~~l~~a~~--~~~Pv~i~~p 172 (324)
T 1w85_B 141 GLKVVIP---STPYDAKGLLISAIR--DNDPVIFLEH 172 (324)
T ss_dssp TCEEECC---SSHHHHHHHHHHHHH--SSSCEEEEEE
T ss_pred CCEEEee---CCHHHHHHHHHHHHH--cCCCEEEEec
Confidence 6777766 677777777777765 4789988644
No 119
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=29.65 E-value=31 Score=31.38 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHh---------ccCCeEEEEcCCCcCCcHHH
Q 003948 666 QCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA---------NEHEILITVEEGSVGGFGSH 721 (784)
Q Consensus 666 ~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~---------~~~~~vVvvEe~~~gG~gs~ 721 (784)
.|..|...|+..||..+.+|+.. .|-.++.+.+.. ..+-+.|++++...||+-..
T Consensus 18 ~c~~aK~lL~~kgV~feEidI~~-d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG~Dd~ 81 (121)
T 1u6t_A 18 KQQDVLGFLEANKIGFEEKDIAA-NEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAF 81 (121)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEEHHHH
T ss_pred HHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHhccccccccCCCcCCCEEEECCEEEechHHH
Confidence 46889999999999999999973 222223333333 12347788888778998743
No 120
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=29.43 E-value=46 Score=28.52 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=42.6
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhc-cCCeEEEEcCCCcCCcHHH
Q 003948 653 DRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEEGSVGGFGSH 721 (784)
Q Consensus 653 ~dvtIva~G----s~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~-~~~~vVvvEe~~~gG~gs~ 721 (784)
.+|+|.+.| ..-..|..|.+.|++.|+....+|+.. .|--.+.+.+... .+-+.|++.....||+...
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~vP~v~i~g~~igg~d~~ 89 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIV 89 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEECHHHH
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCC-CHHHHHHHHHHHCCCCCCeEEECCEEEeChHHH
Confidence 357777776 345688899999988899999999864 1211122333222 2335666765457887643
No 121
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=28.64 E-value=1.2e+02 Score=28.65 Aligned_cols=66 Identities=9% Similarity=0.141 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHhcC------CCcEEEeeccc--cCCCcH--------------------HHHHHHhccCCeEEEEcCCC
Q 003948 663 IVQQCVLAANMLKSQ------DISVTVADARF--CKPLDT--------------------DLIRQLANEHEILITVEEGS 714 (784)
Q Consensus 663 ~v~~aleAae~L~~~------GI~v~VId~~s--lkPlD~--------------------e~i~~~~~~~~~vVvvEe~~ 714 (784)
.-..+..+++.|++. |.+++++|+.- +.|++. +.+.+.+.....+|+.=--+
T Consensus 16 t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP~y 95 (191)
T 1t0i_A 16 CPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQY 95 (191)
T ss_dssp HHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEECB
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEeceE
Confidence 344555667777765 78999999874 322211 23444455566666554444
Q ss_pred cCCcHHHHHHHHHh
Q 003948 715 VGGFGSHVCHFLTL 728 (784)
Q Consensus 715 ~gG~gs~V~~~l~~ 728 (784)
.+++...+..++..
T Consensus 96 ~~~~p~~lK~~iD~ 109 (191)
T 1t0i_A 96 NWGYPAALKNAIDR 109 (191)
T ss_dssp TTBCCHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH
Confidence 57777777777653
No 122
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=28.63 E-value=97 Score=32.12 Aligned_cols=64 Identities=14% Similarity=-0.017 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCcEEEeeccccCC-------Cc--HHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHh
Q 003948 665 QQCVLAANMLKSQDISVTVADARFCKP-------LD--TDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTL 728 (784)
Q Consensus 665 ~~aleAae~L~~~GI~v~VId~~slkP-------lD--~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~ 728 (784)
..+..+++.+++.|++++++|+.-+.. .+ .+.+.+.+.....+|++=--+.+++...+..++..
T Consensus 76 ~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDr 148 (279)
T 2fzv_A 76 LAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQITSVMKAQIDH 148 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccCcCHHHHHHHHH
Confidence 455567777887899999999987531 11 23455556666666665443457777777766643
No 123
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=28.44 E-value=3.3e+02 Score=24.54 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=63.9
Q ss_pred cEEEEEech-hHHHHHHHHHHHhcCCCcEEEeeccccCCCcH--HHHHHHhc----cCCeEEEEcCCCcCCcHHHHHHHH
Q 003948 654 RVAILGYGS-IVQQCVLAANMLKSQDISVTVADARFCKPLDT--DLIRQLAN----EHEILITVEEGSVGGFGSHVCHFL 726 (784)
Q Consensus 654 dvtIva~Gs-~v~~aleAae~L~~~GI~v~VId~~slkPlD~--e~i~~~~~----~~~~vVvvEe~~~gG~gs~V~~~l 726 (784)
.++|++-|. ......++++.+-.+ -.+..+|++-=...+. +.+++.++ ..+.+|.++-++...++..+....
T Consensus 6 giiivsHG~~~A~~l~~~a~~i~G~-~~~~aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~a~~l~~~~ 84 (130)
T 3gx1_A 6 EVIVMMHGRSTATSMVETVQELLSI-ESGIALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSFGNILTEEL 84 (130)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTC-CCCEEEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECSGGGGTHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHcCc-cCEEEEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHHhc
Confidence 488999999 778888899887655 5677888753221111 23333343 345788888755444544333221
Q ss_pred HhcCCCCCCcceEEeecCcccccCCCHHHHH--HHcCCCHHHHHHHHHHHhcC
Q 003948 727 TLSGILDGPLKLRSMVLPDRYIDHGSPADQL--EESGLSSRHISATVLSLLGR 777 (784)
Q Consensus 727 ~~~g~~~~~~~~~~lg~~d~f~~~g~~~ell--e~~gl~~~~I~~~i~~ll~~ 777 (784)
..+++.+.....+.- -|.. ...+-+-++|++.++++.+.
T Consensus 85 --------~~~v~vI~gvnlpml----lea~~~~~~~~~l~el~~~~~~~~~~ 125 (130)
T 3gx1_A 85 --------GIRTKTVTMVSTPVV----LEAMRKASLGRGLEDIYQSCEQLFEN 125 (130)
T ss_dssp --------CCCEEEECSCCHHHH----HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --------CCCEEEEeCCCHHHH----HHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 124555554333321 1221 23445888999988877643
No 124
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=28.35 E-value=1.2e+02 Score=29.57 Aligned_cols=60 Identities=17% Similarity=0.039 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHH
Q 003948 666 QCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLT 727 (784)
Q Consensus 666 ~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~ 727 (784)
.+..+++.+++.|.+++++|+.. +.|.+.+.+.+...+.||+.=--+.+++...+..++.
T Consensus 35 l~~~~~~~~~~~g~~v~~~dL~~--~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iD 94 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVRADS--DYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYID 94 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSS--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCc--cccHHHHHHHHHhCCEEEEECCccccCCCHHHHHHHH
Confidence 44456667777799999999974 5677777777778877777665456888888877775
No 125
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=28.26 E-value=38 Score=32.12 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=24.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeec
Q 003948 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADA 686 (784)
Q Consensus 653 ~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~ 686 (784)
.||+||+.|..- +.||-.|++.|++|.|++-
T Consensus 3 ~dV~IIGaGpaG---L~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAG---LSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHHH---HHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHH---HHHHHHHHHCCCCEEEEEC
Confidence 379999999754 3456668888999999985
No 126
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.21 E-value=57 Score=28.50 Aligned_cols=62 Identities=10% Similarity=0.070 Sum_probs=40.1
Q ss_pred cEEEEEechhHHHHH------HHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhcc------------CCeEEEEcCCCc
Q 003948 654 RVAILGYGSIVQQCV------LAANMLKSQDISVTVADARFCKPLDTDLIRQLANE------------HEILITVEEGSV 715 (784)
Q Consensus 654 dvtIva~Gs~v~~al------eAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~------------~~~vVvvEe~~~ 715 (784)
+|+|.+.- .-..|. +|.+.|++.||..+.+|+.. |.+...++.+. +-+.|++++...
T Consensus 9 ~V~vy~~~-~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~----~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~i 83 (111)
T 2ct6_A 9 VIRVFIAS-SSGFVAIKKKQQDVVRFLEANKIEFEEVDITM----SEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYC 83 (111)
T ss_dssp CEEEEECS-SCSCHHHHHHHHHHHHHHHHTTCCEEEEETTT----CHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEE
T ss_pred EEEEEEcC-CCCCcccchhHHHHHHHHHHcCCCEEEEECCC----CHHHHHHHHHHhcccccccCCCCCCCEEEECCEEE
Confidence 46666543 334455 78889999999999999974 33333222222 236788887667
Q ss_pred CCcHH
Q 003948 716 GGFGS 720 (784)
Q Consensus 716 gG~gs 720 (784)
||+..
T Consensus 84 GG~d~ 88 (111)
T 2ct6_A 84 GDYDS 88 (111)
T ss_dssp EEHHH
T ss_pred eCHHH
Confidence 88764
No 127
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=27.11 E-value=99 Score=28.71 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=30.6
Q ss_pred EEechhH----HHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEc
Q 003948 658 LGYGSIV----QQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVE 711 (784)
Q Consensus 658 va~Gs~v----~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvE 711 (784)
|.|+|+. ..|...++.|++.|++++++|+... +.+.+...+.+.+.+|+.=
T Consensus 5 IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~d~ii~Gs 59 (161)
T 3hly_A 5 IGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAV---DPQELIEAVSSARGIVLGT 59 (161)
T ss_dssp EEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTC---CHHHHHHHHHHCSEEEEEC
T ss_pred EEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC---CHHHHHHHHHhCCEEEEEc
Confidence 4455544 4555666777778999999998643 3344433344555555543
No 128
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=26.41 E-value=1.6e+02 Score=28.93 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=36.3
Q ss_pred CCcEEEEEechhH----HHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEE
Q 003948 652 GDRVAILGYGSIV----QQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILIT 709 (784)
Q Consensus 652 G~dvtIva~Gs~v----~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVv 709 (784)
|++|++|.|++.. .....+.+.|++.|+++.++++.. -+.+.+.+.+++...|++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~---~~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT---ESLGEITTKLRKNDFIYV 85 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT---SCHHHHHHHHHHSSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC---CChHHHHHHHHhCCEEEE
Confidence 6789999988863 234445566677799999988765 244444455555655554
No 129
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=26.34 E-value=1.5e+02 Score=28.70 Aligned_cols=63 Identities=13% Similarity=0.028 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCCcEEEeeccccCC---CcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHh
Q 003948 666 QCVLAANMLKSQDISVTVADARFCKP---LDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTL 728 (784)
Q Consensus 666 ~aleAae~L~~~GI~v~VId~~slkP---lD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~ 728 (784)
.+...++.+++.|.+++++|+.-..| .|.+...+.+.....||+.=--..+++...+..|+..
T Consensus 18 l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDr 83 (192)
T 3f2v_A 18 VHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDE 83 (192)
T ss_dssp HHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHH
Confidence 34445566777799999999987654 4556666667777777776554568888888888765
No 130
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=26.14 E-value=1.5e+02 Score=36.14 Aligned_cols=109 Identities=11% Similarity=-0.026 Sum_probs=60.5
Q ss_pred eeccccHHHHHHHHHHHHhc----C-----C--eeEEEe-cHhH-H-HHHHHHHHHHhhcCCCC---EEEEeeCCCCCCC
Q 003948 510 FDVGIAEQHAVTFAAGLASE----G-----V--KPFCAI-YSSF-L-QRGYDQVVHDVDLQKLP---VRFAMDRAGLVGA 572 (784)
Q Consensus 510 ~d~GIaE~~~vg~AaGlA~~----G-----~--~P~~~t-ys~F-l-~ra~dQi~~~~a~~~lp---V~~v~~~~G~~G~ 572 (784)
++.+..++. +.+|.|+|+. | . .+++.+ =+.| . -..+|.+ |.++..++| +++++..-++ |.
T Consensus 318 ~~~shlg~~-~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Eal-n~A~~~~lp~gg~I~vv~nN~~-~i 394 (933)
T 2jgd_A 318 FNPSHLEIV-SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETL-NMSKARGYEVGGTVRIVINNQV-GF 394 (933)
T ss_dssp CCCSSTTCH-HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHH-HHTTSTTTCCSCCEEEEEECC----
T ss_pred ccCcccccc-cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHH-HHhhccCCCCCceEEEEEeCCc-cc
Confidence 455555553 5667777764 2 1 334443 2334 2 2445554 888999999 7777754442 22
Q ss_pred CC-CCc-----CchhhHhHhccCCCcEEEecCCHHHHHHHHHHHHH---hCCCCeEEEc
Q 003948 573 DG-PTH-----CGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (784)
Q Consensus 573 dG-~TH-----q~~~dla~lr~iPn~~V~~Psd~~E~~~~l~~A~~---~~~~Pv~irl 622 (784)
.+ ++. ....+++-.-.+|.+.| .--|+.++..+++.|.+ ..++|++|-.
T Consensus 395 st~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~D~~av~~a~~~A~e~~r~~~~P~lIe~ 452 (933)
T 2jgd_A 395 TTSNPLDARSTPYCTDIGKMVQAPIFHV-NADDPEAVAFVTRLALDFRNTFKRDVFIDL 452 (933)
T ss_dssp ------------CGGGGGGTTTCCEEEE-ETTCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCCCHHhcccchhHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 23 222 12334333334565554 67789999999988875 3467987743
No 131
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=25.19 E-value=1.2e+02 Score=26.10 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=44.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHH---HHHHh-ccCCeEEEEcCCCcCCcHHH
Q 003948 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL---IRQLA-NEHEILITVEEGSVGGFGSH 721 (784)
Q Consensus 653 ~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~---i~~~~-~~~~~vVvvEe~~~gG~gs~ 721 (784)
.+|+|.+. +.-..|..|.+.|++.|+...++|+....|-+.+. +.+.. ..+-+.|++.....||+...
T Consensus 19 ~~v~vy~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igG~~~~ 90 (113)
T 3rhb_A 19 NTVVIYSK-TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDT 90 (113)
T ss_dssp SSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCEEEcCcHHH
Confidence 35766654 55688999999999999999999987643322222 22221 12345677766557887644
No 132
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=24.92 E-value=79 Score=30.07 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCCcEEEeeccccCCCc-----------HHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHHh
Q 003948 667 CVLAANMLKSQDISVTVADARFCKPLD-----------TDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTL 728 (784)
Q Consensus 667 aleAae~L~~~GI~v~VId~~slkPlD-----------~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~~ 728 (784)
+..+++.|+ .|.+++++|+.-+..++ .+.+.+.+.....||+.=--+.+++...+..++..
T Consensus 26 a~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~ 97 (193)
T 1rtt_A 26 LQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYSMAGVLKNAIDW 97 (193)
T ss_dssp HHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTEECHHHHHHHHH
T ss_pred HHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccCcCHHHHHHHHH
Confidence 333444444 58899999987643222 23344455566666666544457777777776654
No 133
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=24.65 E-value=1.7e+02 Score=31.83 Aligned_cols=71 Identities=15% Similarity=-0.008 Sum_probs=45.8
Q ss_pred EEEechhH----HHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHHHHHHHH
Q 003948 657 ILGYGSIV----QQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLT 727 (784)
Q Consensus 657 Iva~Gs~v----~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~V~~~l~ 727 (784)
+|.|+||. ..|...++.|+++|+.+.++++..+..-|...+.+.+.+.+.+|+-=--..+++-..+..++.
T Consensus 269 ~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l~ 343 (410)
T 4dik_A 269 TVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTLL 343 (410)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTTSSSCHHHHHHHH
T ss_pred eeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHHHH
Confidence 34566654 456667778888999998888877766676666666666666665433334566555554443
No 134
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=24.46 E-value=1.3e+02 Score=31.96 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=47.2
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeecccc-------------CCCcHHHHHHHhccCCeEEEEcCCCcC
Q 003948 650 MEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFC-------------KPLDTDLIRQLANEHEILITVEEGSVG 716 (784)
Q Consensus 650 reG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~sl-------------kPlD~e~i~~~~~~~~~vVvvEe~~~g 716 (784)
..|+.|.|++.|..... +++.+++.|+++-++|..-- ...|.+.+.++++... +|+.|-..
T Consensus 12 ~~~k~IlIlG~G~~g~~---la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~d-vI~~~~e~-- 85 (389)
T 3q2o_A 12 LPGKTIGIIGGGQLGRM---MALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISD-VVTYEFEN-- 85 (389)
T ss_dssp CTTSEEEEECCSHHHHH---HHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCS-EEEESCCC--
T ss_pred CCCCEEEEECCCHHHHH---HHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCC-Eeeecccc--
Confidence 35778999999975444 44445567999999986421 2345677878877654 56666432
Q ss_pred CcHHHHHHHHHhcCC
Q 003948 717 GFGSHVCHFLTLSGI 731 (784)
Q Consensus 717 G~gs~V~~~l~~~g~ 731 (784)
+...+++.+.+.+.
T Consensus 86 -~~~~~~~~l~~~g~ 99 (389)
T 3q2o_A 86 -IDYRCLQWLEKHAY 99 (389)
T ss_dssp -CCHHHHHHHHHHSC
T ss_pred -ccHHHHHHHHhhCc
Confidence 33345556665554
No 135
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=23.77 E-value=1.4e+02 Score=26.72 Aligned_cols=32 Identities=22% Similarity=0.460 Sum_probs=24.8
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEeecc
Q 003948 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687 (784)
Q Consensus 653 ~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~ 687 (784)
..++|+++|.+... .++.|.+.|.++.++|..
T Consensus 8 ~~viIiG~G~~G~~---la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGRVGSL---LGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SCEEEECCSHHHHH---HHHHHHHTTCCEEEEESC
T ss_pred CCEEEECcCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 46899999987664 455677789999999864
No 136
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=23.17 E-value=94 Score=28.37 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=35.8
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCC-CcHHHHHHH
Q 003948 651 EGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKP-LDTDLIRQL 700 (784)
Q Consensus 651 eG~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkP-lD~e~i~~~ 700 (784)
+.+++++||-|+.+.-.+..++.|.+.|.++.++-.|+-.- +-.+.+++.
T Consensus 17 ~~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~g~R~~~~~~~~~el~~l 67 (142)
T 3lyu_A 17 KFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFEPMVILKEELEKA 67 (142)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEGGGCCSHHHHHTT
T ss_pred CCCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEEEeCCHHHhhHHHHHHHH
Confidence 34689999999999888888888887788888884454332 234555543
No 137
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=23.06 E-value=22 Score=32.35 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=30.9
Q ss_pred EeeeCCcEEEEEechhHH--HHHHHHHHHhcCCCcEEEeecc
Q 003948 648 ILMEGDRVAILGYGSIVQ--QCVLAANMLKSQDISVTVADAR 687 (784)
Q Consensus 648 vlreG~dvtIva~Gs~v~--~aleAae~L~~~GI~v~VId~~ 687 (784)
++.++.|++||++|.... .--+..+.|++.||.+++.|-+
T Consensus 57 ll~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 57 VVEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp HHTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred HhhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 345567999999998764 3455677889999999998854
No 138
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=22.85 E-value=3.1e+02 Score=28.55 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEE-EcCCcccchhhHHHHHH-Hhh--------cCCCEEEEEE
Q 003948 258 SISAGLGMAVARDILGKNNNVISV-IGDGAMTAGQAYEAMNN-AGF--------LDANLIVVLN 311 (784)
Q Consensus 258 ~ls~AvG~AlA~~~~g~~~~Vv~v-iGDGal~eG~~~EAln~-A~~--------~~~nlivIv~ 311 (784)
.++.|.|+|++ | -+.++++ .++.. + .++|.+.+ ++. .+.|+++++.
T Consensus 63 ~v~~a~G~A~~----G-~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 118 (324)
T 1umd_B 63 IVGAALGMAAH----G-LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP 118 (324)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc
Confidence 35667777765 4 2445544 88885 3 68888854 443 5789998887
No 139
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=22.75 E-value=1.5e+02 Score=25.95 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=37.3
Q ss_pred EEEechhH----HHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEcCCCcCCcHHH--HHHHHHh
Q 003948 657 ILGYGSIV----QQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSH--VCHFLTL 728 (784)
Q Consensus 657 Iva~Gs~v----~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvEe~~~gG~gs~--V~~~l~~ 728 (784)
+|-|+|.. ..|...++.|++.|++++++++.-. |.+. +.+.+.+|+.=--+.+|.... +..++..
T Consensus 3 ~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~---~~~~----l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 3 EIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDT---NVDD----VASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSC---CHHH----HHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccC---CHHH----HhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 34455544 4555556667677999999997643 3332 334566666544334555444 6666543
No 140
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.71 E-value=1e+02 Score=27.44 Aligned_cols=44 Identities=18% Similarity=0.090 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhccCCeEEEEc
Q 003948 661 GSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVE 711 (784)
Q Consensus 661 Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~~~~~vVvvE 711 (784)
|+.-..|...++.|++.|++++++|+....+ + .+.+.+.+|+.=
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~----~l~~~d~iiig~ 53 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDVNI---D----ELLNEDILILGC 53 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH---H----HHTTCSEEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhCCH---H----HHhhCCEEEEEc
Confidence 4445566666777777899999999875432 2 233455555553
No 141
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=22.65 E-value=2.1e+02 Score=24.61 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=43.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHH----HHHHh-ccCCeEEEEcCCCcCCcHHH
Q 003948 652 GDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL----IRQLA-NEHEILITVEEGSVGGFGSH 721 (784)
Q Consensus 652 G~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~----i~~~~-~~~~~vVvvEe~~~gG~gs~ 721 (784)
..+|+|.+. +.-..|..|.+.|++.|+..+++|+.... +.+. +.+.. ..+-+.|++.....||+...
T Consensus 16 ~~~v~vy~~-~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~--~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l 87 (114)
T 3h8q_A 16 RSRVVIFSK-SYCPHSTRVKELFSSLGVECNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQT 87 (114)
T ss_dssp HCSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEETTTST--THHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred cCCEEEEEc-CCCCcHHHHHHHHHHcCCCcEEEEecCCC--ChHHHHHHHHHHhCCCccCEEEECCEEEeCHHHH
Confidence 346777664 55678999999999999999999986431 2222 22222 23346777765557987643
No 142
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=22.33 E-value=1.4e+02 Score=23.32 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=39.2
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhc-cCCeEEEEcCCCcCCcHHHHHHHHH
Q 003948 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEEGSVGGFGSHVCHFLT 727 (784)
Q Consensus 655 vtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~-~~~~vVvvEe~~~gG~gs~V~~~l~ 727 (784)
+++.+. ..-..|.++...|++.|+....+|+.. .|-..+.+.+... ..-++++++....+|+. .+.+++.
T Consensus 3 i~~y~~-~~C~~C~~~~~~l~~~~i~~~~~~i~~-~~~~~~~~~~~~~~~~vP~l~~~g~~i~g~~-~i~~~~~ 73 (82)
T 1fov_A 3 VEIYTK-ETCPYCHRAKALLSSKGVSFQELPIDG-NAAKREEMIKRSGRTTVPQIFIDAQHIGGYD-DLYALDA 73 (82)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHHTCCCEEEECTT-CSHHHHHHHHHHSSCCSCEEEETTEEEESHH-HHHHHHH
T ss_pred EEEEEC-CCChhHHHHHHHHHHCCCCcEEEECCC-CHHHHHHHHHHhCCCCcCEEEECCEEEeCHH-HHHHHHH
Confidence 444432 344678888888888899999999863 1111122322222 23355666544467764 4555543
No 143
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=20.58 E-value=1.5e+02 Score=24.09 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=37.3
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEeeccccCCCcHHHHHHHhc-cCCeEEEEcCCCcCCcH
Q 003948 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEEGSVGGFG 719 (784)
Q Consensus 654 dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~slkPlD~e~i~~~~~-~~~~vVvvEe~~~gG~g 719 (784)
.+++.+ -..-..|.++...|++.|++...+|+..- |-..+.+.+... ..-++++++....+|+.
T Consensus 7 ~v~ly~-~~~C~~C~~~~~~L~~~~i~~~~~di~~~-~~~~~~l~~~~~~~~vP~l~~~g~~i~g~~ 71 (92)
T 2khp_A 7 DVIIYT-RPGCPYCARAKALLARKGAEFNEIDASAT-PELRAEMQERSGRNTFPQIFIGSVHVGGCD 71 (92)
T ss_dssp CEEEEE-CTTCHHHHHHHHHHHHTTCCCEEEESTTS-HHHHHHHHHHHTSSCCCEEEETTEEEESHH
T ss_pred cEEEEE-CCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHhCCCCcCEEEECCEEEcCHH
Confidence 355544 24457888898999989999999998631 111122332222 22345656544467765
No 144
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=20.13 E-value=1.8e+02 Score=25.66 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=24.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhcCCCcEEEeecc
Q 003948 652 GDRVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687 (784)
Q Consensus 652 G~dvtIva~Gs~v~~aleAae~L~~~GI~v~VId~~ 687 (784)
...++|+++|..-. ..++.|.++|.++.++|..
T Consensus 6 ~~~v~I~G~G~iG~---~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGV---GLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHH---HHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHHHH---HHHHHHHHCCCeEEEEECC
Confidence 45788999987543 4566677789999999853
No 145
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=20.01 E-value=1e+02 Score=29.57 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=41.4
Q ss_pred chhHHHHHHHHHHHhcCCCcEEEeeccccCCC-----------------cH-HHHHHHhccCCeEEEEcCCCcCCcHHHH
Q 003948 661 GSIVQQCVLAANMLKSQDISVTVADARFCKPL-----------------DT-DLIRQLANEHEILITVEEGSVGGFGSHV 722 (784)
Q Consensus 661 Gs~v~~aleAae~L~~~GI~v~VId~~slkPl-----------------D~-e~i~~~~~~~~~vVvvEe~~~gG~gs~V 722 (784)
|..-..+..+++.|++.|.+++++|+....|. |. +.+.+.+...+.||+.=--+.+++...+
T Consensus 18 g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gsP~y~~~~~~~l 97 (211)
T 1ydg_A 18 GTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQM 97 (211)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEEEEETTEECHHH
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEcCccccCccHHH
Confidence 44455666677788878999999998764110 10 1122334455666655443457777777
Q ss_pred HHHHHh
Q 003948 723 CHFLTL 728 (784)
Q Consensus 723 ~~~l~~ 728 (784)
..++..
T Consensus 98 k~~ld~ 103 (211)
T 1ydg_A 98 RAFIDT 103 (211)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 777754
Done!