Citrus Sinensis ID: 003948

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780----
MKWMSWEIGSPPVRGPHSPSRFSYYKNTSLVITQRRHYTISTASLSVSLTSSFVIHLALTTEYWIAPTMALSSGIAIGAKQSISPFFTVSQPSLSYRKQNFCLRASAEKNSSDGEEATKMVMRKEKSGWKIDFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI
cccccccccccccccccccccccEEccccEEEEEEEEEEEEEccEEEEHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccEEEEcccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccEEccccccccHHHHHHHHHHHHcccccccEEEEEEccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHcHHHHHHHcccccEEEEEEccccccccccccccHHHHHHHccccccEEEccccHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccCEEEECcccEEEEEccccHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHHcccccccccEEEccccccccccccHHHHHHHccccHHHHHHHHHHHHccccccccc
****S**IGSPPVRGPHSPSRFSYYKNTSLVITQRRHYTISTASLSVSLTSSFVIHLALTTEYWIAPTMALSSGIAIGAKQSISPFFTVSQPSLSYRKQNFCL*******************************EEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFD**********SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP******
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MKWMSWEIGSPPVRGPHSPSRFSYYKNTSLVITQRRHYTISTASLSVSLTSSFVIHLALTTEYWIAPTMALSSGIAIGAKQSISPFFTVSQPSLSYRKQNFCLRASAEKNSSDGEEATKMVMRKEKSGWKIDFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Is a limiting enzyme for plastidic isoprenoid biosynthesis and essential for chloroplast development.confidentQ38854
Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Is a limiting enzyme for plastidic isoprenoid biosynthesis and essential for chloroplast development.confidentQ6YU51
1-deoxy-D-xylulose-5-phosphate synthase Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP).probableA5V6A9

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
2.-.-.-Transferases.probable
2.2.-.-Transferring aldehyde or ketone residues.probable
2.2.1.-15-hydroxyicosatetraenoate dehydrogenase.probable
2.2.1.71-deoxy-D-xylulose-5-phosphate synthase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2O1X, chain A
Confidence level:very confident
Coverage over the Query: 137-337,383-777
View the alignment between query and template
View the model in PyMOL
Template: 2YIC, chain A
Confidence level:confident
Coverage over the Query: 153-325,376-753
View the alignment between query and template
View the model in PyMOL