Query 003950
Match_columns 784
No_of_seqs 554 out of 4576
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 14:52:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.9E-72 1.5E-76 639.6 41.4 604 3-703 27-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.2E-57 2.5E-62 552.6 47.7 636 95-776 133-906 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.6E-42 1.2E-46 357.4 14.9 271 142-416 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.8 8.7E-21 1.9E-25 231.4 17.5 235 513-752 58-320 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.9E-19 4.1E-24 219.7 17.2 238 520-770 117-363 (968)
6 KOG0444 Cytoskeletal regulator 99.7 4.2E-19 9.1E-24 185.0 -2.2 156 619-777 220-376 (1255)
7 KOG4194 Membrane glycoprotein 99.7 7.7E-18 1.7E-22 174.8 1.6 247 497-754 172-430 (873)
8 KOG0444 Cytoskeletal regulator 99.7 5.3E-18 1.2E-22 176.9 -2.5 209 535-755 45-283 (1255)
9 PLN03210 Resistant to P. syrin 99.6 5.4E-15 1.2E-19 180.8 20.1 220 520-751 656-904 (1153)
10 KOG4194 Membrane glycoprotein 99.6 1.8E-16 3.8E-21 164.8 5.9 134 619-752 243-377 (873)
11 KOG0472 Leucine-rich repeat pr 99.5 4.8E-17 1E-21 161.8 -8.9 211 534-755 80-312 (565)
12 KOG0472 Leucine-rich repeat pr 99.5 2.2E-15 4.8E-20 150.1 1.3 111 641-753 431-541 (565)
13 PRK04841 transcriptional regul 99.5 2E-12 4.4E-17 157.3 26.7 296 132-468 9-334 (903)
14 KOG0617 Ras suppressor protein 99.5 3.6E-16 7.7E-21 137.8 -5.0 165 568-740 29-196 (264)
15 KOG0617 Ras suppressor protein 99.5 5.5E-16 1.2E-20 136.6 -5.3 157 591-755 31-188 (264)
16 PRK15370 E3 ubiquitin-protein 99.4 1.8E-12 4E-17 148.2 12.0 162 573-753 263-428 (754)
17 PRK15387 E3 ubiquitin-protein 99.4 4.4E-12 9.6E-17 144.1 14.8 212 522-754 223-459 (788)
18 PRK15370 E3 ubiquitin-protein 99.3 7E-12 1.5E-16 143.5 12.5 222 521-774 199-427 (754)
19 cd00116 LRR_RI Leucine-rich re 99.3 8.5E-13 1.8E-17 140.0 2.9 233 523-755 25-293 (319)
20 KOG0618 Serine/threonine phosp 99.3 1.6E-13 3.5E-18 150.8 -3.9 203 535-752 277-488 (1081)
21 PRK00411 cdc6 cell division co 99.3 1.2E-09 2.6E-14 119.2 25.5 285 135-435 28-358 (394)
22 cd00116 LRR_RI Leucine-rich re 99.3 1.3E-12 2.7E-17 138.7 1.8 216 536-751 72-318 (319)
23 TIGR02928 orc1/cdc6 family rep 99.2 2.9E-09 6.2E-14 115.0 25.3 286 135-435 13-350 (365)
24 KOG0618 Serine/threonine phosp 99.2 1.9E-12 4E-17 142.6 -0.9 80 688-769 378-458 (1081)
25 TIGR03015 pepcterm_ATPase puta 99.2 1.5E-09 3.2E-14 111.9 20.5 180 155-339 40-242 (269)
26 KOG4237 Extracellular matrix p 99.2 9.3E-13 2E-17 131.6 -3.4 245 524-777 70-361 (498)
27 PRK15387 E3 ubiquitin-protein 99.1 1.5E-10 3.2E-15 131.8 11.0 143 574-738 324-467 (788)
28 COG2909 MalT ATP-dependent tra 99.1 1.6E-08 3.4E-13 112.0 25.5 297 132-470 14-342 (894)
29 PF01637 Arch_ATPase: Archaeal 99.1 3.9E-10 8.4E-15 113.7 10.9 190 139-334 1-233 (234)
30 TIGR00635 ruvB Holliday juncti 99.1 3.6E-09 7.7E-14 111.1 16.4 265 137-434 4-288 (305)
31 KOG4237 Extracellular matrix p 99.0 2.7E-11 5.8E-16 121.3 -1.7 223 519-750 89-356 (498)
32 KOG3207 Beta-tubulin folding c 99.0 4.3E-11 9.3E-16 121.5 -0.3 205 520-730 120-339 (505)
33 PRK00080 ruvB Holliday junctio 99.0 1.5E-08 3.4E-13 106.9 17.8 268 134-434 22-309 (328)
34 PF05729 NACHT: NACHT domain 98.9 5E-09 1.1E-13 99.3 10.9 136 159-303 1-163 (166)
35 COG3903 Predicted ATPase [Gene 98.9 8.5E-09 1.9E-13 105.6 11.7 290 157-468 13-316 (414)
36 PLN03150 hypothetical protein; 98.9 4.6E-09 1E-13 120.1 9.6 107 622-728 419-526 (623)
37 COG3899 Predicted ATPase [Gene 98.9 1.5E-07 3.3E-12 110.4 21.3 309 139-467 2-387 (849)
38 PTZ00112 origin recognition co 98.9 2.3E-07 5.1E-12 103.6 21.2 203 135-339 753-986 (1164)
39 KOG3207 Beta-tubulin folding c 98.8 3.8E-10 8.2E-15 114.8 -0.7 206 542-752 118-338 (505)
40 KOG1259 Nischarin, modulator o 98.8 1E-09 2.3E-14 105.9 0.3 126 621-752 284-411 (490)
41 KOG1909 Ran GTPase-activating 98.8 1E-09 2.2E-14 108.8 0.2 229 537-765 50-327 (382)
42 KOG0532 Leucine-rich repeat (L 98.8 3.5E-10 7.6E-15 118.5 -4.1 163 569-742 95-259 (722)
43 PLN03150 hypothetical protein; 98.8 2E-08 4.4E-13 114.8 9.2 106 646-751 419-526 (623)
44 PTZ00202 tuzin; Provisional 98.7 4.3E-07 9.4E-12 94.2 17.7 164 128-302 253-433 (550)
45 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.3E-13 95.5 5.4 123 621-748 19-148 (175)
46 PRK13342 recombination factor 98.7 1.2E-07 2.7E-12 103.2 13.7 174 135-335 10-196 (413)
47 KOG1909 Ran GTPase-activating 98.7 1.5E-09 3.3E-14 107.6 -1.8 192 539-730 86-311 (382)
48 PRK12402 replication factor C 98.7 6.1E-07 1.3E-11 95.8 17.1 194 136-334 14-225 (337)
49 COG2256 MGS1 ATPase related to 98.7 1.9E-07 4E-12 95.2 12.0 167 137-330 24-207 (436)
50 PRK07003 DNA polymerase III su 98.7 1.7E-06 3.6E-11 96.7 20.2 175 136-335 15-221 (830)
51 KOG0532 Leucine-rich repeat (L 98.6 1.6E-09 3.4E-14 113.8 -3.6 168 576-754 79-248 (722)
52 PRK06893 DNA replication initi 98.6 7E-07 1.5E-11 88.9 15.3 144 158-335 39-203 (229)
53 PF14580 LRR_9: Leucine-rich r 98.6 5.2E-08 1.1E-12 91.0 6.7 125 641-770 15-147 (175)
54 COG1474 CDC6 Cdc6-related prot 98.6 2.9E-06 6.2E-11 89.6 19.5 197 136-335 16-238 (366)
55 PF05496 RuvB_N: Holliday junc 98.6 1.3E-06 2.8E-11 83.3 15.0 165 134-333 21-219 (233)
56 PRK14961 DNA polymerase III su 98.6 1.9E-06 4E-11 92.2 18.2 187 136-333 15-218 (363)
57 KOG1259 Nischarin, modulator o 98.6 3.2E-08 6.9E-13 95.9 3.7 214 538-766 175-402 (490)
58 PRK14960 DNA polymerase III su 98.6 1.2E-06 2.6E-11 96.7 16.0 173 136-333 14-217 (702)
59 COG4886 Leucine-rich repeat (L 98.6 4.2E-08 9E-13 107.3 4.6 127 619-750 161-287 (394)
60 PLN03025 replication factor C 98.6 1.8E-06 3.8E-11 90.9 16.4 176 135-332 11-197 (319)
61 KOG4658 Apoptotic ATPase [Sign 98.5 5.7E-08 1.2E-12 113.5 5.2 154 591-751 521-679 (889)
62 PRK00440 rfc replication facto 98.5 6.5E-06 1.4E-10 87.2 20.2 173 137-333 17-201 (319)
63 PRK14949 DNA polymerase III su 98.5 1.6E-06 3.6E-11 98.7 16.0 173 136-333 15-218 (944)
64 COG4886 Leucine-rich repeat (L 98.5 8.5E-08 1.8E-12 104.8 5.6 181 576-766 97-280 (394)
65 PRK04195 replication factor C 98.5 8E-06 1.7E-10 90.9 21.1 170 135-334 12-201 (482)
66 TIGR03420 DnaA_homol_Hda DnaA 98.5 2.1E-06 4.6E-11 85.8 14.9 162 142-337 22-203 (226)
67 PF13401 AAA_22: AAA domain; P 98.5 1.9E-07 4.2E-12 84.4 6.7 116 157-276 3-125 (131)
68 cd00009 AAA The AAA+ (ATPases 98.5 8.2E-07 1.8E-11 82.1 10.5 121 140-278 1-131 (151)
69 PRK12323 DNA polymerase III su 98.5 2.2E-06 4.7E-11 94.5 15.0 192 136-334 15-224 (700)
70 PRK09112 DNA polymerase III su 98.5 8.5E-06 1.8E-10 85.8 18.6 194 131-335 17-240 (351)
71 PRK14963 DNA polymerase III su 98.5 4.3E-06 9.4E-11 92.3 16.7 189 136-332 13-214 (504)
72 PRK07471 DNA polymerase III su 98.5 8.5E-06 1.8E-10 86.3 18.2 197 132-335 14-238 (365)
73 PRK07940 DNA polymerase III su 98.4 5.6E-06 1.2E-10 88.4 16.5 169 137-335 5-213 (394)
74 PRK13341 recombination factor 98.4 2.2E-06 4.8E-11 98.2 14.1 169 136-330 27-212 (725)
75 PRK14957 DNA polymerase III su 98.4 4.5E-06 9.7E-11 92.3 15.7 174 137-336 16-222 (546)
76 PRK08727 hypothetical protein; 98.4 7.8E-06 1.7E-10 81.5 16.1 161 138-332 21-201 (233)
77 PF13191 AAA_16: AAA ATPase do 98.4 4.9E-07 1.1E-11 87.3 7.0 48 138-187 1-51 (185)
78 PRK14958 DNA polymerase III su 98.4 5.9E-06 1.3E-10 91.4 15.9 174 136-333 15-218 (509)
79 PRK08691 DNA polymerase III su 98.4 5.6E-06 1.2E-10 92.5 15.5 174 136-333 15-218 (709)
80 PRK06645 DNA polymerase III su 98.4 1.2E-05 2.7E-10 88.3 18.1 190 136-332 20-226 (507)
81 PRK05564 DNA polymerase III su 98.4 1E-05 2.2E-10 85.0 16.7 170 137-334 4-189 (313)
82 PRK14956 DNA polymerase III su 98.4 4.4E-06 9.5E-11 89.8 14.0 185 136-331 17-218 (484)
83 PRK14964 DNA polymerase III su 98.4 8.9E-06 1.9E-10 88.6 16.5 173 136-332 12-214 (491)
84 PRK07994 DNA polymerase III su 98.4 7E-06 1.5E-10 92.2 16.0 187 136-333 15-218 (647)
85 TIGR00678 holB DNA polymerase 98.4 1.2E-05 2.7E-10 77.5 15.9 153 148-331 3-187 (188)
86 PRK14962 DNA polymerase III su 98.4 7.9E-06 1.7E-10 89.5 15.6 178 136-338 13-222 (472)
87 KOG2120 SCF ubiquitin ligase, 98.3 1.2E-08 2.6E-13 98.8 -5.7 148 621-768 234-392 (419)
88 PRK08084 DNA replication initi 98.3 1.4E-05 3.1E-10 79.8 15.9 166 136-335 22-209 (235)
89 PF13173 AAA_14: AAA domain 98.3 1.4E-06 3.1E-11 78.1 7.2 114 158-295 2-127 (128)
90 PRK05896 DNA polymerase III su 98.3 1.6E-05 3.4E-10 88.0 16.2 192 135-337 14-223 (605)
91 PRK14951 DNA polymerase III su 98.3 1.8E-05 4E-10 88.7 16.7 191 136-333 15-223 (618)
92 PRK14969 DNA polymerase III su 98.3 2.9E-05 6.3E-10 86.7 18.1 176 136-335 15-221 (527)
93 PF13855 LRR_8: Leucine rich r 98.3 6.1E-07 1.3E-11 68.5 3.3 59 622-680 2-60 (61)
94 TIGR02397 dnaX_nterm DNA polym 98.3 4.2E-05 9.2E-10 82.3 18.4 177 136-335 13-218 (355)
95 PRK15386 type III secretion pr 98.3 1.9E-06 4.2E-11 90.3 7.5 134 591-750 50-187 (426)
96 PF13855 LRR_8: Leucine rich r 98.2 6.9E-07 1.5E-11 68.2 3.1 40 688-727 20-59 (61)
97 PRK14970 DNA polymerase III su 98.2 4.1E-05 9E-10 82.5 17.8 172 136-332 16-206 (367)
98 KOG2028 ATPase related to the 98.2 1.2E-05 2.5E-10 80.7 12.1 170 137-329 138-330 (554)
99 PF14516 AAA_35: AAA-like doma 98.2 8.4E-05 1.8E-09 78.3 19.4 201 130-342 4-246 (331)
100 PRK05642 DNA replication initi 98.2 2.6E-05 5.6E-10 77.9 14.3 144 159-336 46-209 (234)
101 PRK14955 DNA polymerase III su 98.2 1.7E-05 3.6E-10 85.9 13.9 195 135-333 14-226 (397)
102 PF05659 RPW8: Arabidopsis bro 98.2 1.7E-05 3.8E-10 71.4 11.3 111 2-112 32-144 (147)
103 cd01128 rho_factor Transcripti 98.2 2.6E-06 5.7E-11 84.8 6.4 94 157-252 15-114 (249)
104 PRK08903 DnaA regulatory inact 98.2 3.9E-05 8.4E-10 76.6 14.3 163 139-339 21-203 (227)
105 PRK14952 DNA polymerase III su 98.2 5.5E-05 1.2E-09 84.6 16.7 191 136-338 12-223 (584)
106 TIGR02903 spore_lon_C ATP-depe 98.2 4.2E-05 9E-10 87.1 16.1 49 134-182 151-199 (615)
107 PRK08451 DNA polymerase III su 98.1 0.00011 2.3E-09 81.0 18.0 176 136-334 13-217 (535)
108 KOG0531 Protein phosphatase 1, 98.1 2.6E-07 5.7E-12 101.1 -2.3 102 569-679 92-196 (414)
109 PRK14959 DNA polymerase III su 98.1 6.2E-05 1.3E-09 83.9 15.9 192 137-339 16-225 (624)
110 PRK09087 hypothetical protein; 98.1 6.4E-05 1.4E-09 74.3 14.5 135 158-335 44-195 (226)
111 PRK07764 DNA polymerase III su 98.1 4.9E-05 1.1E-09 88.5 15.8 182 137-333 15-219 (824)
112 PRK15386 type III secretion pr 98.1 3.9E-06 8.5E-11 88.0 6.1 137 568-728 48-188 (426)
113 PRK09111 DNA polymerase III su 98.1 3.9E-05 8.4E-10 86.3 14.1 194 134-334 21-232 (598)
114 PF00308 Bac_DnaA: Bacterial d 98.1 0.00016 3.5E-09 71.2 16.9 176 136-335 8-208 (219)
115 PRK07133 DNA polymerase III su 98.1 9.2E-05 2E-09 83.9 17.0 186 136-336 17-221 (725)
116 PRK14953 DNA polymerase III su 98.1 0.00012 2.5E-09 80.8 17.6 171 137-334 16-219 (486)
117 PRK14950 DNA polymerase III su 98.1 0.00012 2.6E-09 83.3 18.2 189 136-334 15-220 (585)
118 PRK09376 rho transcription ter 98.1 7.3E-06 1.6E-10 85.1 7.4 101 148-252 158-267 (416)
119 PF05621 TniB: Bacterial TniB 98.1 0.00016 3.4E-09 72.7 16.3 190 139-332 36-258 (302)
120 TIGR01242 26Sp45 26S proteasom 98.0 1E-05 2.2E-10 86.8 8.2 165 136-329 121-328 (364)
121 PRK14954 DNA polymerase III su 98.0 6.9E-05 1.5E-09 84.5 14.8 196 136-335 15-229 (620)
122 PRK06305 DNA polymerase III su 98.0 0.00015 3.4E-09 79.3 16.9 175 136-335 16-223 (451)
123 KOG2227 Pre-initiation complex 98.0 0.00011 2.4E-09 76.7 14.6 171 134-306 147-341 (529)
124 PHA02544 44 clamp loader, smal 98.0 8.4E-05 1.8E-09 78.4 14.5 141 134-300 18-170 (316)
125 PRK14087 dnaA chromosomal repl 98.0 0.00045 9.8E-09 75.7 20.4 181 136-336 115-320 (450)
126 PRK07399 DNA polymerase III su 98.0 0.00066 1.4E-08 70.6 20.5 190 137-334 4-220 (314)
127 KOG2543 Origin recognition com 98.0 8E-05 1.7E-09 75.7 13.1 160 136-301 5-191 (438)
128 PRK03992 proteasome-activating 98.0 3.7E-05 7.9E-10 82.9 11.2 163 137-328 131-336 (389)
129 KOG2120 SCF ubiquitin ligase, 98.0 9.9E-08 2.1E-12 92.6 -8.1 193 546-744 186-391 (419)
130 PRK14971 DNA polymerase III su 98.0 0.0003 6.5E-09 79.9 17.9 171 137-332 17-219 (614)
131 KOG0989 Replication factor C, 97.9 6.1E-05 1.3E-09 74.4 10.5 178 135-330 34-225 (346)
132 PRK06647 DNA polymerase III su 97.9 0.00026 5.6E-09 79.4 16.7 184 136-333 15-218 (563)
133 KOG1859 Leucine-rich repeat pr 97.9 1.1E-07 2.4E-12 102.7 -9.7 125 622-753 165-292 (1096)
134 TIGR02639 ClpA ATP-dependent C 97.9 9.1E-05 2E-09 86.8 12.9 148 137-303 182-358 (731)
135 TIGR03345 VI_ClpV1 type VI sec 97.9 9.9E-05 2.1E-09 87.1 13.1 173 136-329 186-390 (852)
136 TIGR00362 DnaA chromosomal rep 97.9 0.002 4.3E-08 70.4 22.2 152 158-333 136-308 (405)
137 PRK14948 DNA polymerase III su 97.9 0.00055 1.2E-08 77.7 18.1 188 137-334 16-221 (620)
138 PRK14088 dnaA chromosomal repl 97.9 0.00037 8E-09 76.3 16.0 175 136-333 105-303 (440)
139 PRK14965 DNA polymerase III su 97.9 0.00039 8.4E-09 78.8 16.6 191 136-337 15-223 (576)
140 PRK05563 DNA polymerase III su 97.8 0.00068 1.5E-08 76.4 18.3 186 136-333 15-218 (559)
141 PRK00149 dnaA chromosomal repl 97.8 0.0018 3.9E-08 71.7 21.1 152 158-333 148-320 (450)
142 PRK12422 chromosomal replicati 97.8 0.0089 1.9E-07 65.4 25.4 146 159-329 142-307 (445)
143 TIGR00767 rho transcription te 97.8 4E-05 8.6E-10 80.2 6.8 95 157-253 167-267 (415)
144 PRK06620 hypothetical protein; 97.8 0.00042 9.2E-09 67.9 13.8 155 134-333 14-187 (214)
145 PF05673 DUF815: Protein of un 97.8 0.00063 1.4E-08 66.2 14.5 48 133-180 23-74 (249)
146 TIGR02881 spore_V_K stage V sp 97.8 0.00026 5.7E-09 72.2 12.7 43 138-180 7-64 (261)
147 KOG0531 Protein phosphatase 1, 97.8 2.6E-06 5.5E-11 93.4 -2.3 173 541-730 91-268 (414)
148 PRK05707 DNA polymerase III su 97.8 0.00065 1.4E-08 71.0 15.7 90 239-335 104-203 (328)
149 PRK11331 5-methylcytosine-spec 97.8 0.00013 2.9E-09 77.7 10.4 111 136-254 174-285 (459)
150 CHL00181 cbbX CbbX; Provisiona 97.7 0.00063 1.4E-08 69.9 14.6 148 138-305 24-211 (287)
151 KOG4341 F-box protein containi 97.7 2.9E-06 6.2E-11 86.7 -3.0 226 542-771 213-460 (483)
152 PRK14086 dnaA chromosomal repl 97.7 0.0011 2.4E-08 73.8 16.5 152 158-333 314-486 (617)
153 PRK10865 protein disaggregatio 97.7 0.00037 8E-09 82.7 13.6 44 137-180 178-221 (857)
154 PRK08769 DNA polymerase III su 97.7 0.0014 3E-08 67.9 16.1 164 145-335 12-208 (319)
155 CHL00095 clpC Clp protease ATP 97.7 0.00022 4.8E-09 84.6 11.6 172 137-327 179-379 (821)
156 TIGR03689 pup_AAA proteasome A 97.7 0.00042 9.1E-09 76.0 12.5 151 137-303 182-378 (512)
157 TIGR02880 cbbX_cfxQ probable R 97.7 0.00083 1.8E-08 69.1 14.0 148 138-305 23-210 (284)
158 PF12799 LRR_4: Leucine Rich r 97.6 7.8E-05 1.7E-09 52.0 4.0 40 693-733 1-40 (44)
159 KOG1514 Origin recognition com 97.6 0.0022 4.8E-08 70.6 17.0 197 135-336 394-622 (767)
160 COG3267 ExeA Type II secretory 97.6 0.0042 9.1E-08 60.3 16.8 175 155-337 48-247 (269)
161 PF12799 LRR_4: Leucine Rich r 97.6 4.4E-05 9.5E-10 53.3 2.6 42 717-758 1-42 (44)
162 COG2255 RuvB Holliday junction 97.6 0.00036 7.7E-09 68.3 9.7 166 133-333 22-221 (332)
163 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00038 8.3E-09 82.9 12.2 148 137-303 173-349 (852)
164 KOG0991 Replication factor C, 97.6 0.0012 2.5E-08 62.6 12.4 69 135-204 25-93 (333)
165 PTZ00361 26 proteosome regulat 97.6 0.00017 3.7E-09 77.9 7.7 163 137-328 183-388 (438)
166 PRK08116 hypothetical protein; 97.5 0.00038 8.2E-09 70.8 9.5 100 159-277 115-221 (268)
167 PRK08058 DNA polymerase III su 97.5 0.0016 3.4E-08 68.6 14.5 141 139-301 7-180 (329)
168 KOG4579 Leucine-rich repeat (L 97.5 7.1E-06 1.5E-10 70.7 -2.5 87 644-733 52-139 (177)
169 TIGR00602 rad24 checkpoint pro 97.5 0.00061 1.3E-08 76.9 11.9 49 132-180 79-132 (637)
170 COG0593 DnaA ATPase involved i 97.5 0.0051 1.1E-07 65.1 17.9 169 136-328 87-279 (408)
171 PTZ00454 26S protease regulato 97.5 0.00087 1.9E-08 72.0 12.0 164 137-329 145-351 (398)
172 KOG2004 Mitochondrial ATP-depe 97.5 0.004 8.6E-08 68.6 16.7 149 137-303 411-596 (906)
173 PRK07993 DNA polymerase III su 97.5 0.0042 9.2E-08 65.2 16.7 173 145-333 10-202 (334)
174 PRK06871 DNA polymerase III su 97.5 0.0055 1.2E-07 63.7 17.1 171 146-333 11-201 (325)
175 COG0542 clpA ATP-binding subun 97.5 0.0029 6.2E-08 72.0 16.0 106 137-256 491-608 (786)
176 KOG1859 Leucine-rich repeat pr 97.5 2E-05 4.3E-10 85.9 -0.9 130 619-754 107-268 (1096)
177 COG0466 Lon ATP-dependent Lon 97.5 0.00035 7.5E-09 77.0 8.3 149 137-303 323-508 (782)
178 PRK12608 transcription termina 97.4 0.00071 1.5E-08 70.5 10.2 104 146-251 120-230 (380)
179 PRK06090 DNA polymerase III su 97.4 0.0096 2.1E-07 61.7 18.1 159 146-335 12-201 (319)
180 TIGR00763 lon ATP-dependent pr 97.4 0.0025 5.5E-08 75.3 15.8 44 137-180 320-369 (775)
181 PRK11034 clpA ATP-dependent Cl 97.4 0.0008 1.7E-08 78.0 11.3 44 137-180 186-229 (758)
182 PF00004 AAA: ATPase family as 97.4 0.00027 5.9E-09 63.7 6.1 21 161-181 1-21 (132)
183 PRK10865 protein disaggregatio 97.4 0.0063 1.4E-07 72.4 18.7 44 137-180 568-620 (857)
184 KOG3665 ZYG-1-like serine/thre 97.4 0.00013 2.9E-09 83.5 4.4 82 619-702 146-229 (699)
185 smart00382 AAA ATPases associa 97.4 0.0012 2.7E-08 60.0 10.0 90 159-255 3-92 (148)
186 TIGR01241 FtsH_fam ATP-depende 97.4 0.0016 3.5E-08 73.0 12.5 163 137-328 55-259 (495)
187 KOG3665 ZYG-1-like serine/thre 97.3 7.4E-05 1.6E-09 85.6 1.2 143 621-765 122-277 (699)
188 PF04665 Pox_A32: Poxvirus A32 97.3 0.001 2.3E-08 65.3 8.9 36 159-197 14-49 (241)
189 PRK10536 hypothetical protein; 97.3 0.00097 2.1E-08 65.8 8.5 131 137-276 55-212 (262)
190 COG1222 RPT1 ATP-dependent 26S 97.3 0.0032 7E-08 63.9 12.1 173 138-339 152-371 (406)
191 PF13177 DNA_pol3_delta2: DNA 97.2 0.0037 8.1E-08 58.3 11.6 116 141-277 1-142 (162)
192 CHL00176 ftsH cell division pr 97.2 0.0042 9.1E-08 70.8 13.9 162 137-327 183-386 (638)
193 COG5238 RNA1 Ran GTPase-activa 97.2 6.3E-05 1.4E-09 72.6 -0.5 193 539-731 86-317 (388)
194 TIGR03346 chaperone_ClpB ATP-d 97.2 0.014 3E-07 69.8 18.9 44 137-180 565-617 (852)
195 COG1373 Predicted ATPase (AAA+ 97.2 0.0041 8.8E-08 67.2 13.1 126 146-299 26-163 (398)
196 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0073 1.6E-07 61.5 14.2 43 159-207 22-64 (262)
197 PLN00020 ribulose bisphosphate 97.2 0.0079 1.7E-07 62.2 13.7 24 157-180 147-170 (413)
198 PRK08118 topology modulation p 97.1 0.00023 5E-09 66.8 2.2 35 159-194 2-37 (167)
199 PF07728 AAA_5: AAA domain (dy 97.1 0.00038 8.3E-09 63.4 3.5 85 161-262 2-86 (139)
200 cd01133 F1-ATPase_beta F1 ATP 97.1 0.0012 2.6E-08 66.3 7.1 93 157-251 68-173 (274)
201 TIGR03345 VI_ClpV1 type VI sec 97.1 0.017 3.6E-07 68.7 17.8 44 137-180 566-618 (852)
202 PF10443 RNA12: RNA12 protein; 97.1 0.055 1.2E-06 57.3 19.5 193 142-341 1-284 (431)
203 KOG2982 Uncharacterized conser 97.1 0.00045 9.8E-09 67.8 3.7 206 542-752 68-291 (418)
204 KOG1969 DNA replication checkp 97.1 0.033 7.1E-07 62.0 18.0 75 158-254 326-400 (877)
205 CHL00095 clpC Clp protease ATP 97.0 0.026 5.7E-07 67.3 18.8 44 137-180 509-561 (821)
206 KOG2982 Uncharacterized conser 97.0 0.00035 7.5E-09 68.5 2.4 166 592-759 70-243 (418)
207 PRK04132 replication factor C 97.0 0.015 3.2E-07 67.8 16.0 146 164-333 570-729 (846)
208 TIGR02639 ClpA ATP-dependent C 97.0 0.019 4.1E-07 67.6 17.0 106 137-256 454-568 (731)
209 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0073 1.6E-07 66.5 12.6 165 137-328 228-428 (489)
210 PRK08181 transposase; Validate 97.0 0.0021 4.6E-08 65.0 7.8 99 157-277 105-209 (269)
211 KOG2739 Leucine-rich acidic nu 97.0 0.00054 1.2E-08 66.5 3.3 63 667-730 63-129 (260)
212 KOG2035 Replication factor C, 97.0 0.077 1.7E-06 52.1 17.6 222 138-378 14-282 (351)
213 COG1484 DnaC DNA replication p 97.0 0.0024 5.1E-08 64.3 7.9 76 157-253 104-179 (254)
214 PF01695 IstB_IS21: IstB-like 97.0 0.0013 2.8E-08 62.4 5.7 99 157-277 46-150 (178)
215 PRK10787 DNA-binding ATP-depen 97.0 0.011 2.5E-07 69.2 14.5 44 137-180 322-371 (784)
216 KOG1644 U2-associated snRNP A' 96.9 0.0013 2.8E-08 61.2 5.0 104 646-752 43-152 (233)
217 PRK12377 putative replication 96.9 0.005 1.1E-07 61.5 9.5 100 157-277 100-206 (248)
218 PRK06921 hypothetical protein; 96.9 0.0052 1.1E-07 62.4 9.6 39 157-197 116-154 (266)
219 KOG1644 U2-associated snRNP A' 96.9 0.0014 3.1E-08 60.9 4.9 100 574-678 44-149 (233)
220 PRK07261 topology modulation p 96.9 0.0029 6.3E-08 59.7 7.2 21 160-180 2-22 (171)
221 COG2607 Predicted ATPase (AAA+ 96.9 0.022 4.8E-07 54.7 12.7 90 136-254 59-152 (287)
222 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0011 2.5E-08 68.7 4.7 45 137-181 51-101 (361)
223 PF00448 SRP54: SRP54-type pro 96.8 0.0013 2.8E-08 63.4 4.6 57 158-217 1-58 (196)
224 KOG2228 Origin recognition com 96.8 0.053 1.1E-06 54.8 15.7 164 137-303 24-219 (408)
225 TIGR02902 spore_lonB ATP-depen 96.8 0.008 1.7E-07 67.6 11.3 44 137-180 65-108 (531)
226 PRK06526 transposase; Provisio 96.8 0.003 6.5E-08 63.6 7.1 99 157-277 97-201 (254)
227 PF02562 PhoH: PhoH-like prote 96.8 0.0015 3.3E-08 62.7 4.7 128 142-276 5-155 (205)
228 KOG0735 AAA+-type ATPase [Post 96.8 0.0069 1.5E-07 66.7 9.9 145 158-328 431-608 (952)
229 PTZ00494 tuzin-like protein; P 96.8 0.98 2.1E-05 48.0 25.2 164 129-303 363-544 (664)
230 PRK09183 transposase/IS protei 96.8 0.0054 1.2E-07 62.1 8.6 23 158-180 102-124 (259)
231 PRK08699 DNA polymerase III su 96.7 0.019 4E-07 60.1 12.7 82 240-332 112-203 (325)
232 PRK06964 DNA polymerase III su 96.7 0.011 2.4E-07 61.9 10.9 86 239-335 130-225 (342)
233 PRK04296 thymidine kinase; Pro 96.7 0.004 8.6E-08 60.0 7.0 110 159-277 3-116 (190)
234 COG0470 HolB ATPase involved i 96.7 0.012 2.5E-07 62.5 11.3 118 138-277 2-149 (325)
235 KOG0743 AAA+-type ATPase [Post 96.7 0.18 3.9E-06 53.5 19.2 143 159-339 236-413 (457)
236 KOG0728 26S proteasome regulat 96.7 0.019 4.2E-07 55.0 11.0 143 136-303 145-331 (404)
237 KOG4579 Leucine-rich repeat (L 96.6 0.00013 2.9E-09 63.1 -3.2 82 667-750 51-133 (177)
238 PF13207 AAA_17: AAA domain; P 96.6 0.0014 3E-08 58.0 3.1 21 160-180 1-21 (121)
239 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0097 2.1E-07 59.7 9.4 50 158-207 19-71 (235)
240 KOG0741 AAA+-type ATPase [Post 96.6 0.022 4.7E-07 60.7 11.9 139 158-325 538-704 (744)
241 TIGR02237 recomb_radB DNA repa 96.6 0.0062 1.3E-07 59.9 7.6 47 158-208 12-58 (209)
242 COG1223 Predicted ATPase (AAA+ 96.6 0.025 5.4E-07 54.8 11.0 163 137-328 121-318 (368)
243 PHA02244 ATPase-like protein 96.6 0.026 5.7E-07 58.8 12.1 46 135-180 94-141 (383)
244 KOG0734 AAA+-type ATPase conta 96.6 0.014 3.1E-07 62.1 10.2 45 137-181 304-360 (752)
245 TIGR01243 CDC48 AAA family ATP 96.6 0.011 2.4E-07 69.7 10.8 164 137-329 453-657 (733)
246 COG2812 DnaX DNA polymerase II 96.5 0.011 2.4E-07 64.7 9.6 182 137-330 16-215 (515)
247 PRK08939 primosomal protein Dn 96.5 0.012 2.6E-07 60.9 9.5 115 141-277 135-261 (306)
248 TIGR01243 CDC48 AAA family ATP 96.5 0.01 2.3E-07 70.0 10.2 163 138-329 179-381 (733)
249 KOG0733 Nuclear AAA ATPase (VC 96.5 0.017 3.7E-07 62.7 10.6 91 137-252 190-293 (802)
250 PRK09361 radB DNA repair and r 96.5 0.009 2E-07 59.5 8.0 45 158-206 23-67 (225)
251 KOG0730 AAA+-type ATPase [Post 96.5 0.021 4.6E-07 62.8 11.1 43 138-180 435-490 (693)
252 KOG2739 Leucine-rich acidic nu 96.5 0.0022 4.7E-08 62.4 3.2 99 667-768 41-148 (260)
253 PRK07952 DNA replication prote 96.5 0.013 2.8E-07 58.4 8.9 99 158-276 99-204 (244)
254 PRK06696 uridine kinase; Valid 96.4 0.0035 7.6E-08 62.2 4.7 40 141-180 2-44 (223)
255 COG1618 Predicted nucleotide k 96.4 0.0026 5.7E-08 57.0 3.3 35 159-195 6-41 (179)
256 COG5238 RNA1 Ran GTPase-activa 96.4 0.0013 2.9E-08 63.8 1.5 186 519-705 90-315 (388)
257 KOG0738 AAA+-type ATPase [Post 96.4 0.078 1.7E-06 54.6 13.9 42 139-180 214-267 (491)
258 PF14532 Sigma54_activ_2: Sigm 96.4 0.012 2.6E-07 53.4 7.5 42 140-181 1-44 (138)
259 TIGR02236 recomb_radA DNA repa 96.3 0.016 3.4E-07 60.9 9.3 57 158-215 95-154 (310)
260 PRK00771 signal recognition pa 96.3 0.014 3.1E-07 63.2 9.0 90 157-250 94-184 (437)
261 COG1875 NYN ribonuclease and A 96.3 0.01 2.2E-07 60.4 7.2 131 141-275 228-386 (436)
262 PRK15455 PrkA family serine pr 96.3 0.0037 8E-08 68.4 4.3 43 138-180 77-125 (644)
263 cd01394 radB RadB. The archaea 96.3 0.011 2.4E-07 58.5 7.6 42 158-202 19-60 (218)
264 TIGR02012 tigrfam_recA protein 96.3 0.013 2.8E-07 60.6 8.0 84 158-251 55-143 (321)
265 TIGR02238 recomb_DMC1 meiotic 96.3 0.017 3.7E-07 60.0 8.9 58 158-216 96-156 (313)
266 cd01393 recA_like RecA is a b 96.3 0.016 3.5E-07 57.7 8.6 48 158-207 19-71 (226)
267 PRK06835 DNA replication prote 96.3 0.028 6.1E-07 58.8 10.3 101 157-277 182-289 (329)
268 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.028 6.1E-07 51.6 9.1 116 159-277 3-138 (159)
269 cd03247 ABCC_cytochrome_bd The 96.1 0.035 7.6E-07 52.9 9.7 23 158-180 28-50 (178)
270 COG0563 Adk Adenylate kinase a 96.1 0.011 2.4E-07 55.8 6.1 88 160-254 2-90 (178)
271 PRK09354 recA recombinase A; P 96.1 0.018 4E-07 60.0 8.2 84 158-251 60-148 (349)
272 cd00983 recA RecA is a bacter 96.1 0.0089 1.9E-07 61.8 5.8 84 158-251 55-143 (325)
273 PRK11034 clpA ATP-dependent Cl 96.1 0.024 5.1E-07 66.1 9.6 106 137-256 458-572 (758)
274 COG0468 RecA RecA/RadA recombi 96.1 0.033 7.1E-07 56.3 9.4 91 158-251 60-151 (279)
275 KOG0744 AAA+-type ATPase [Post 96.1 0.1 2.2E-06 52.5 12.4 39 158-197 177-217 (423)
276 TIGR01425 SRP54_euk signal rec 96.1 0.08 1.7E-06 57.0 12.8 24 157-180 99-122 (429)
277 cd03115 SRP The signal recogni 96.1 0.013 2.7E-07 55.7 6.2 35 160-197 2-36 (173)
278 KOG0739 AAA+-type ATPase [Post 96.1 0.093 2E-06 52.0 11.9 44 137-180 133-188 (439)
279 KOG0731 AAA+-type ATPase conta 96.1 0.17 3.6E-06 57.8 15.6 169 135-331 309-520 (774)
280 PRK05541 adenylylsulfate kinas 96.0 0.018 3.9E-07 54.8 7.2 36 157-195 6-41 (176)
281 KOG0733 Nuclear AAA ATPase (VC 96.0 0.11 2.5E-06 56.6 13.5 123 158-305 545-694 (802)
282 PRK10867 signal recognition pa 96.0 0.015 3.2E-07 62.9 7.2 24 157-180 99-122 (433)
283 PRK15429 formate hydrogenlyase 96.0 0.062 1.3E-06 63.0 12.9 45 137-181 376-422 (686)
284 PRK06547 hypothetical protein; 96.0 0.0092 2E-07 56.2 4.8 33 148-180 5-37 (172)
285 PRK09270 nucleoside triphospha 96.0 0.035 7.5E-07 55.4 9.2 25 156-180 31-55 (229)
286 PRK07667 uridine kinase; Provi 96.0 0.0093 2E-07 57.6 5.0 35 146-180 3-39 (193)
287 PLN03187 meiotic recombination 96.0 0.031 6.6E-07 58.6 9.0 59 158-217 126-187 (344)
288 COG0542 clpA ATP-binding subun 96.0 0.025 5.4E-07 64.7 8.9 147 137-302 170-345 (786)
289 cd03214 ABC_Iron-Siderophores_ 96.0 0.06 1.3E-06 51.4 10.4 117 157-277 24-158 (180)
290 cd03238 ABC_UvrA The excision 96.0 0.045 9.8E-07 51.7 9.3 110 158-277 21-149 (176)
291 TIGR00959 ffh signal recogniti 95.9 0.018 3.9E-07 62.3 7.3 24 157-180 98-121 (428)
292 cd01122 GP4d_helicase GP4d_hel 95.9 0.047 1E-06 56.1 10.1 52 158-213 30-81 (271)
293 cd03222 ABC_RNaseL_inhibitor T 95.9 0.043 9.2E-07 51.9 8.8 24 157-180 24-47 (177)
294 PRK14722 flhF flagellar biosyn 95.8 0.035 7.6E-07 58.7 8.8 89 158-253 137-227 (374)
295 PHA00729 NTP-binding motif con 95.8 0.012 2.5E-07 57.3 4.8 33 148-180 7-39 (226)
296 cd01120 RecA-like_NTPases RecA 95.8 0.039 8.4E-07 51.5 8.4 39 160-201 1-39 (165)
297 PRK14974 cell division protein 95.8 0.052 1.1E-06 56.8 9.9 92 157-253 139-234 (336)
298 PRK07132 DNA polymerase III su 95.8 0.54 1.2E-05 48.5 17.1 158 146-334 5-184 (299)
299 TIGR03499 FlhF flagellar biosy 95.8 0.038 8.2E-07 56.8 8.7 87 157-250 193-281 (282)
300 PF08423 Rad51: Rad51; InterP 95.7 0.03 6.5E-07 56.6 7.6 56 158-214 38-96 (256)
301 TIGR01360 aden_kin_iso1 adenyl 95.7 0.012 2.5E-07 56.8 4.5 24 157-180 2-25 (188)
302 cd01131 PilT Pilus retraction 95.7 0.033 7.2E-07 54.0 7.6 106 159-276 2-108 (198)
303 PLN03186 DNA repair protein RA 95.7 0.046 1E-06 57.4 9.1 58 158-216 123-183 (342)
304 PF13238 AAA_18: AAA domain; P 95.7 0.0078 1.7E-07 53.8 2.8 20 161-180 1-20 (129)
305 PRK13531 regulatory ATPase Rav 95.7 0.019 4.1E-07 62.2 6.1 42 137-180 20-61 (498)
306 PF13604 AAA_30: AAA domain; P 95.7 0.059 1.3E-06 52.1 9.0 31 150-180 10-40 (196)
307 PTZ00035 Rad51 protein; Provis 95.6 0.062 1.3E-06 56.6 9.8 58 158-216 118-178 (337)
308 cd03223 ABCD_peroxisomal_ALDP 95.6 0.11 2.5E-06 48.7 10.7 24 157-180 26-49 (166)
309 PRK05022 anaerobic nitric oxid 95.6 0.17 3.7E-06 57.0 13.9 46 136-181 186-233 (509)
310 PRK04301 radA DNA repair and r 95.6 0.051 1.1E-06 57.1 9.2 57 158-215 102-161 (317)
311 PRK08533 flagellar accessory p 95.6 0.11 2.3E-06 51.7 11.0 48 158-210 24-71 (230)
312 TIGR02239 recomb_RAD51 DNA rep 95.6 0.046 1E-06 57.0 8.7 58 158-216 96-156 (316)
313 cd02025 PanK Pantothenate kina 95.6 0.036 7.9E-07 54.6 7.4 21 160-180 1-21 (220)
314 COG1428 Deoxynucleoside kinase 95.6 0.02 4.4E-07 54.2 5.1 47 158-210 4-50 (216)
315 COG4608 AppF ABC-type oligopep 95.6 0.092 2E-06 52.1 9.9 90 157-252 38-138 (268)
316 PF00485 PRK: Phosphoribulokin 95.6 0.0093 2E-07 57.7 3.1 21 160-180 1-21 (194)
317 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.072 1.6E-06 48.7 8.6 24 157-180 25-48 (144)
318 cd02019 NK Nucleoside/nucleoti 95.5 0.01 2.2E-07 46.3 2.6 21 160-180 1-21 (69)
319 KOG4341 F-box protein containi 95.5 0.0017 3.8E-08 66.9 -2.3 226 519-748 214-460 (483)
320 cd03228 ABCC_MRP_Like The MRP 95.5 0.091 2E-06 49.6 9.5 24 157-180 27-50 (171)
321 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.018 3.9E-07 55.2 4.8 21 160-180 1-21 (183)
322 PTZ00301 uridine kinase; Provi 95.5 0.019 4.1E-07 55.9 4.8 23 158-180 3-25 (210)
323 KOG2123 Uncharacterized conser 95.4 0.0011 2.3E-08 64.6 -3.8 99 592-699 18-123 (388)
324 cd03216 ABC_Carb_Monos_I This 95.4 0.059 1.3E-06 50.4 7.8 110 157-277 25-142 (163)
325 COG1419 FlhF Flagellar GTP-bin 95.4 0.052 1.1E-06 57.0 7.9 87 158-251 203-291 (407)
326 TIGR01817 nifA Nif-specific re 95.4 0.27 5.9E-06 55.9 14.6 46 136-181 195-242 (534)
327 PRK08233 hypothetical protein; 95.4 0.013 2.9E-07 56.0 3.5 23 158-180 3-25 (182)
328 TIGR00390 hslU ATP-dependent p 95.4 0.032 6.9E-07 59.2 6.3 44 137-180 12-69 (441)
329 PTZ00088 adenylate kinase 1; P 95.3 0.031 6.8E-07 55.2 5.9 21 160-180 8-28 (229)
330 PF01583 APS_kinase: Adenylyls 95.3 0.022 4.9E-07 52.0 4.4 36 158-196 2-37 (156)
331 PF00154 RecA: recA bacterial 95.3 0.022 4.9E-07 58.7 4.9 85 158-252 53-142 (322)
332 PRK05480 uridine/cytidine kina 95.3 0.015 3.3E-07 57.1 3.6 25 156-180 4-28 (209)
333 TIGR02974 phageshock_pspF psp 95.3 0.1 2.2E-06 55.0 9.9 42 139-180 1-44 (329)
334 PRK11889 flhF flagellar biosyn 95.2 0.21 4.5E-06 52.8 11.7 24 157-180 240-263 (436)
335 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.24 5.1E-06 49.1 11.6 23 158-180 30-52 (254)
336 PF13671 AAA_33: AAA domain; P 95.2 0.015 3.2E-07 53.1 3.1 21 160-180 1-21 (143)
337 COG0488 Uup ATPase components 95.2 0.33 7.2E-06 54.2 14.1 24 157-180 347-370 (530)
338 COG0541 Ffh Signal recognition 95.2 0.31 6.8E-06 51.5 12.9 117 158-277 100-251 (451)
339 cd03229 ABC_Class3 This class 95.2 0.053 1.1E-06 51.6 6.9 24 157-180 25-48 (178)
340 PF11868 DUF3388: Protein of u 95.2 0.1 2.3E-06 46.5 7.9 44 147-200 43-88 (192)
341 cd03230 ABC_DR_subfamily_A Thi 95.2 0.064 1.4E-06 50.8 7.4 24 157-180 25-48 (173)
342 PF00158 Sigma54_activat: Sigm 95.2 0.08 1.7E-06 49.6 7.9 42 139-180 1-44 (168)
343 PF13481 AAA_25: AAA domain; P 95.2 0.1 2.2E-06 50.5 8.9 42 159-200 33-81 (193)
344 TIGR00235 udk uridine kinase. 95.2 0.017 3.7E-07 56.6 3.5 24 157-180 5-28 (207)
345 PRK06762 hypothetical protein; 95.1 0.017 3.7E-07 54.4 3.3 23 158-180 2-24 (166)
346 COG0464 SpoVK ATPases of the A 95.1 0.15 3.3E-06 57.3 11.5 144 138-306 243-426 (494)
347 cd03246 ABCC_Protease_Secretio 95.1 0.089 1.9E-06 49.8 8.2 24 157-180 27-50 (173)
348 PF10236 DAP3: Mitochondrial r 95.1 0.36 7.8E-06 50.3 13.3 49 284-332 258-306 (309)
349 KOG0736 Peroxisome assembly fa 95.1 0.17 3.6E-06 56.9 10.9 92 137-253 672-776 (953)
350 PRK14527 adenylate kinase; Pro 95.1 0.077 1.7E-06 51.2 7.7 24 157-180 5-28 (191)
351 TIGR00064 ftsY signal recognit 95.1 0.056 1.2E-06 55.1 7.0 55 157-215 71-127 (272)
352 PRK11608 pspF phage shock prot 95.0 0.096 2.1E-06 55.2 8.9 44 137-180 6-51 (326)
353 cd03283 ABC_MutS-like MutS-lik 95.0 0.16 3.4E-06 49.3 9.7 22 159-180 26-47 (199)
354 COG4618 ArpD ABC-type protease 95.0 0.15 3.3E-06 54.6 10.0 23 158-180 362-384 (580)
355 PF00560 LRR_1: Leucine Rich R 95.0 0.0095 2.1E-07 34.4 0.7 21 718-738 1-21 (22)
356 PRK12723 flagellar biosynthesi 95.0 0.082 1.8E-06 56.5 8.2 90 157-252 173-265 (388)
357 PRK05201 hslU ATP-dependent pr 95.0 0.047 1E-06 58.0 6.2 75 137-213 15-106 (443)
358 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.049 1.1E-06 53.4 6.1 23 158-180 29-51 (213)
359 KOG0729 26S proteasome regulat 95.0 0.093 2E-06 51.0 7.6 43 138-180 178-233 (435)
360 TIGR03877 thermo_KaiC_1 KaiC d 95.0 0.15 3.2E-06 51.1 9.7 48 158-210 21-68 (237)
361 TIGR01069 mutS2 MutS2 family p 95.0 0.024 5.3E-07 66.3 4.5 184 157-355 321-521 (771)
362 TIGR01650 PD_CobS cobaltochela 94.9 0.071 1.5E-06 55.0 7.3 67 132-206 40-106 (327)
363 PRK03839 putative kinase; Prov 94.9 0.019 4.2E-07 54.8 3.0 21 160-180 2-22 (180)
364 PRK10463 hydrogenase nickel in 94.9 0.036 7.8E-07 56.2 5.0 34 154-189 100-133 (290)
365 PF12775 AAA_7: P-loop contain 94.9 0.022 4.8E-07 58.0 3.4 33 147-180 23-55 (272)
366 PF00910 RNA_helicase: RNA hel 94.9 0.014 3E-07 50.2 1.7 20 161-180 1-20 (107)
367 PRK09280 F0F1 ATP synthase sub 94.9 0.072 1.6E-06 57.7 7.4 93 157-251 143-248 (463)
368 PRK10733 hflB ATP-dependent me 94.9 0.17 3.6E-06 58.6 10.9 44 137-180 152-207 (644)
369 cd00544 CobU Adenosylcobinamid 94.9 0.1 2.2E-06 49.0 7.5 82 160-250 1-82 (169)
370 PRK07276 DNA polymerase III su 94.8 0.92 2E-05 46.4 15.0 62 238-300 101-172 (290)
371 PF08433 KTI12: Chromatin asso 94.8 0.04 8.8E-07 55.9 5.2 22 159-180 2-23 (270)
372 COG1116 TauB ABC-type nitrate/ 94.8 0.27 5.9E-06 48.2 10.5 24 157-180 28-51 (248)
373 cd03282 ABC_MSH4_euk MutS4 hom 94.8 0.054 1.2E-06 52.6 5.8 111 158-277 29-151 (204)
374 PRK06217 hypothetical protein; 94.8 0.047 1E-06 52.3 5.3 22 160-181 3-24 (183)
375 cd03232 ABC_PDR_domain2 The pl 94.8 0.099 2.1E-06 50.5 7.6 24 157-180 32-55 (192)
376 PF08298 AAA_PrkA: PrkA AAA do 94.8 0.046 1E-06 56.5 5.4 45 136-180 60-110 (358)
377 COG4133 CcmA ABC-type transpor 94.8 0.48 1E-05 44.2 11.3 52 226-280 136-193 (209)
378 cd01135 V_A-ATPase_B V/A-type 94.8 0.088 1.9E-06 52.9 7.3 94 158-252 69-177 (276)
379 TIGR00554 panK_bact pantothena 94.7 0.076 1.6E-06 54.3 6.9 25 156-180 60-84 (290)
380 PF07726 AAA_3: ATPase family 94.7 0.014 3E-07 50.9 1.3 27 161-189 2-28 (131)
381 KOG2123 Uncharacterized conser 94.7 0.0012 2.6E-08 64.3 -5.7 100 544-651 18-123 (388)
382 PRK12726 flagellar biosynthesi 94.7 0.16 3.4E-06 53.5 9.1 89 157-252 205-296 (407)
383 PRK04040 adenylate kinase; Pro 94.7 0.026 5.6E-07 54.1 3.3 23 158-180 2-24 (188)
384 COG0572 Udk Uridine kinase [Nu 94.7 0.028 6E-07 54.1 3.4 29 157-187 7-35 (218)
385 PRK05703 flhF flagellar biosyn 94.7 0.11 2.4E-06 56.6 8.5 87 158-251 221-309 (424)
386 PRK12727 flagellar biosynthesi 94.7 0.11 2.3E-06 57.1 8.1 88 158-252 350-439 (559)
387 PRK00409 recombination and DNA 94.7 0.031 6.7E-07 65.7 4.4 173 157-355 326-526 (782)
388 KOG0652 26S proteasome regulat 94.7 0.37 8E-06 46.8 10.7 50 137-188 171-233 (424)
389 PRK06067 flagellar accessory p 94.6 0.092 2E-06 52.5 7.3 48 158-210 25-72 (234)
390 TIGR03881 KaiC_arch_4 KaiC dom 94.6 0.13 2.8E-06 51.3 8.3 52 158-215 20-71 (229)
391 COG3640 CooC CO dehydrogenase 94.6 0.048 1E-06 52.4 4.8 43 160-204 2-44 (255)
392 TIGR02858 spore_III_AA stage I 94.6 0.25 5.5E-06 50.1 10.3 121 146-277 98-229 (270)
393 PRK00625 shikimate kinase; Pro 94.6 0.025 5.4E-07 53.3 2.9 21 160-180 2-22 (173)
394 TIGR03575 selen_PSTK_euk L-ser 94.6 0.058 1.3E-06 56.4 5.7 20 161-180 2-21 (340)
395 PRK12724 flagellar biosynthesi 94.6 0.075 1.6E-06 56.7 6.5 23 158-180 223-245 (432)
396 KOG1051 Chaperone HSP104 and r 94.5 0.28 6.1E-06 57.2 11.5 105 137-256 562-675 (898)
397 PRK12597 F0F1 ATP synthase sub 94.5 0.095 2.1E-06 57.0 7.4 94 157-252 142-248 (461)
398 cd01129 PulE-GspE PulE/GspE Th 94.5 0.11 2.3E-06 52.9 7.4 119 140-274 62-180 (264)
399 COG0714 MoxR-like ATPases [Gen 94.5 0.071 1.5E-06 56.4 6.4 63 138-208 25-87 (329)
400 PF05970 PIF1: PIF1-like helic 94.5 0.068 1.5E-06 57.3 6.3 35 146-180 10-44 (364)
401 PF12780 AAA_8: P-loop contain 94.5 0.063 1.4E-06 54.4 5.6 95 139-261 10-109 (268)
402 PRK10923 glnG nitrogen regulat 94.5 0.37 8E-06 54.0 12.4 45 137-181 138-184 (469)
403 cd02023 UMPK Uridine monophosp 94.5 0.024 5.2E-07 55.1 2.6 21 160-180 1-21 (198)
404 cd03285 ABC_MSH2_euk MutS2 hom 94.5 0.034 7.4E-07 54.9 3.6 113 157-277 29-153 (222)
405 COG2884 FtsE Predicted ATPase 94.4 0.3 6.4E-06 45.6 9.2 25 157-181 27-51 (223)
406 PRK06002 fliI flagellum-specif 94.4 0.12 2.5E-06 55.9 7.7 89 158-251 165-264 (450)
407 cd03244 ABCC_MRP_domain2 Domai 94.4 0.37 8E-06 47.7 11.0 23 158-180 30-52 (221)
408 PF03193 DUF258: Protein of un 94.4 0.056 1.2E-06 49.7 4.6 35 144-181 24-58 (161)
409 COG0465 HflB ATP-dependent Zn 94.4 0.23 5E-06 55.4 10.2 49 134-182 147-207 (596)
410 TIGR00150 HI0065_YjeE ATPase, 94.4 0.056 1.2E-06 48.0 4.5 38 144-181 6-45 (133)
411 PF06745 KaiC: KaiC; InterPro 94.4 0.049 1.1E-06 54.2 4.6 49 158-210 19-67 (226)
412 PRK05439 pantothenate kinase; 94.4 0.24 5.2E-06 51.1 9.7 25 156-180 84-108 (311)
413 cd02024 NRK1 Nicotinamide ribo 94.4 0.026 5.7E-07 53.7 2.5 21 160-180 1-21 (187)
414 TIGR01039 atpD ATP synthase, F 94.4 0.12 2.6E-06 55.9 7.6 94 157-252 142-248 (461)
415 TIGR02322 phosphon_PhnN phosph 94.4 0.032 6.9E-07 53.2 3.1 22 159-180 2-23 (179)
416 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.22 4.7E-06 50.6 9.3 39 158-199 36-74 (259)
417 PRK14528 adenylate kinase; Pro 94.4 0.081 1.8E-06 50.7 5.8 22 159-180 2-23 (186)
418 KOG2170 ATPase of the AAA+ sup 94.3 0.13 2.8E-06 51.4 7.1 110 138-264 83-201 (344)
419 PF03308 ArgK: ArgK protein; 94.3 0.062 1.3E-06 52.9 4.9 61 145-207 14-77 (266)
420 PRK14532 adenylate kinase; Pro 94.3 0.16 3.5E-06 48.8 7.9 20 161-180 3-22 (188)
421 COG1066 Sms Predicted ATP-depe 94.3 0.15 3.2E-06 53.3 7.8 86 158-252 93-179 (456)
422 KOG3347 Predicted nucleotide k 94.3 0.034 7.4E-07 49.2 2.7 36 158-201 7-42 (176)
423 TIGR01420 pilT_fam pilus retra 94.3 0.17 3.6E-06 53.8 8.6 108 157-275 121-228 (343)
424 PRK05800 cobU adenosylcobinami 94.3 0.1 2.3E-06 48.9 6.2 83 160-250 3-85 (170)
425 TIGR02329 propionate_PrpR prop 94.3 0.41 8.9E-06 53.6 11.9 45 137-181 212-258 (526)
426 PRK08972 fliI flagellum-specif 94.2 0.12 2.6E-06 55.5 7.3 88 158-251 162-262 (444)
427 PHA02774 E1; Provisional 94.2 0.14 3.1E-06 56.5 7.9 35 146-180 421-456 (613)
428 TIGR01351 adk adenylate kinase 94.2 0.075 1.6E-06 52.1 5.5 20 161-180 2-21 (210)
429 PF06309 Torsin: Torsin; Inte 94.2 0.077 1.7E-06 46.2 4.7 44 138-181 26-76 (127)
430 PRK14269 phosphate ABC transpo 94.2 0.42 9.2E-06 48.2 11.1 23 158-180 28-50 (246)
431 cd01121 Sms Sms (bacterial rad 94.2 0.13 2.7E-06 54.9 7.4 86 158-251 82-168 (372)
432 PRK12678 transcription termina 94.2 0.1 2.2E-06 57.3 6.7 99 149-251 406-513 (672)
433 PRK00889 adenylylsulfate kinas 94.2 0.044 9.5E-07 52.0 3.6 24 157-180 3-26 (175)
434 COG1936 Predicted nucleotide k 94.2 0.038 8.2E-07 50.6 2.8 20 160-179 2-21 (180)
435 COG2274 SunT ABC-type bacterio 94.2 0.23 5.1E-06 57.5 9.9 52 227-278 613-670 (709)
436 PRK00131 aroK shikimate kinase 94.1 0.04 8.7E-07 52.2 3.2 23 158-180 4-26 (175)
437 PF13245 AAA_19: Part of AAA d 94.1 0.1 2.2E-06 41.5 4.9 24 157-180 9-33 (76)
438 cd03369 ABCC_NFT1 Domain 2 of 94.1 0.63 1.4E-05 45.5 11.7 24 157-180 33-56 (207)
439 COG3854 SpoIIIAA ncharacterize 94.1 0.26 5.5E-06 47.3 8.3 119 149-275 128-251 (308)
440 COG1124 DppF ABC-type dipeptid 94.1 0.06 1.3E-06 52.2 4.2 24 157-180 32-55 (252)
441 KOG1970 Checkpoint RAD17-RFC c 94.1 0.92 2E-05 49.3 13.4 37 144-180 89-132 (634)
442 PF00006 ATP-synt_ab: ATP synt 94.1 0.072 1.6E-06 51.9 4.9 87 158-250 15-114 (215)
443 PRK13947 shikimate kinase; Pro 94.1 0.036 7.9E-07 52.4 2.8 21 160-180 3-23 (171)
444 smart00534 MUTSac ATPase domai 94.1 0.042 9.1E-07 52.7 3.3 21 160-180 1-21 (185)
445 COG1102 Cmk Cytidylate kinase 94.1 0.035 7.6E-07 50.0 2.4 44 160-217 2-45 (179)
446 cd00227 CPT Chloramphenicol (C 94.1 0.039 8.4E-07 52.4 3.0 22 159-180 3-24 (175)
447 PRK00279 adk adenylate kinase; 94.1 0.084 1.8E-06 52.0 5.4 21 160-180 2-22 (215)
448 PRK11388 DNA-binding transcrip 94.0 0.73 1.6E-05 53.7 14.0 44 137-180 325-370 (638)
449 cd02028 UMPK_like Uridine mono 94.0 0.036 7.7E-07 52.8 2.6 21 160-180 1-21 (179)
450 cd02021 GntK Gluconate kinase 94.0 0.036 7.7E-07 51.1 2.6 21 160-180 1-21 (150)
451 cd00984 DnaB_C DnaB helicase C 94.0 0.32 7E-06 48.9 9.8 52 158-213 13-64 (242)
452 PF13306 LRR_5: Leucine rich r 94.0 0.16 3.6E-06 45.1 6.8 117 619-742 10-128 (129)
453 COG0378 HypB Ni2+-binding GTPa 94.0 0.13 2.9E-06 48.1 6.1 49 158-208 13-61 (202)
454 TIGR03263 guanyl_kin guanylate 94.0 0.042 9.2E-07 52.4 3.1 22 159-180 2-23 (180)
455 PRK06995 flhF flagellar biosyn 94.0 0.23 5.1E-06 54.4 9.0 87 158-251 256-344 (484)
456 PRK09519 recA DNA recombinatio 94.0 0.16 3.6E-06 58.6 8.2 95 147-251 46-148 (790)
457 TIGR02868 CydC thiol reductant 94.0 0.38 8.1E-06 54.8 11.3 24 157-180 360-383 (529)
458 TIGR03305 alt_F1F0_F1_bet alte 93.9 0.11 2.4E-06 56.1 6.4 94 157-252 137-243 (449)
459 TIGR00708 cobA cob(I)alamin ad 93.9 0.36 7.7E-06 45.0 8.8 117 158-277 5-140 (173)
460 cd00071 GMPK Guanosine monopho 93.9 0.043 9.4E-07 49.6 2.8 21 160-180 1-21 (137)
461 COG1224 TIP49 DNA helicase TIP 93.9 0.18 3.8E-06 51.6 7.2 78 135-216 37-124 (450)
462 PRK13407 bchI magnesium chelat 93.9 0.048 1E-06 57.0 3.5 46 135-180 6-51 (334)
463 PRK10751 molybdopterin-guanine 93.9 0.051 1.1E-06 50.8 3.3 24 157-180 5-28 (173)
464 PRK14529 adenylate kinase; Pro 93.9 0.17 3.8E-06 49.6 7.1 86 161-254 3-89 (223)
465 COG1126 GlnQ ABC-type polar am 93.8 0.074 1.6E-06 50.6 4.2 36 157-196 27-62 (240)
466 PLN02348 phosphoribulokinase 93.8 0.09 1.9E-06 55.5 5.3 25 156-180 47-71 (395)
467 PF03205 MobB: Molybdopterin g 93.8 0.051 1.1E-06 49.2 3.1 38 159-199 1-39 (140)
468 KOG0924 mRNA splicing factor A 93.8 0.29 6.3E-06 54.0 9.1 124 146-277 361-510 (1042)
469 PRK10820 DNA-binding transcrip 93.8 0.24 5.2E-06 55.8 9.1 44 137-180 204-249 (520)
470 COG0003 ArsA Predicted ATPase 93.8 0.1 2.2E-06 54.2 5.5 49 158-209 2-50 (322)
471 cd00267 ABC_ATPase ABC (ATP-bi 93.8 0.32 7E-06 45.1 8.5 23 158-180 25-47 (157)
472 PF13086 AAA_11: AAA domain; P 93.8 0.063 1.4E-06 53.6 4.1 52 160-212 19-75 (236)
473 PRK13765 ATP-dependent proteas 93.7 0.1 2.3E-06 59.4 6.0 75 136-216 30-105 (637)
474 cd02020 CMPK Cytidine monophos 93.7 0.043 9.3E-07 50.3 2.5 21 160-180 1-21 (147)
475 cd00820 PEPCK_HprK Phosphoenol 93.7 0.06 1.3E-06 45.7 3.1 22 158-179 15-36 (107)
476 cd03233 ABC_PDR_domain1 The pl 93.7 0.4 8.6E-06 46.7 9.4 25 157-181 32-56 (202)
477 TIGR00073 hypB hydrogenase acc 93.7 0.069 1.5E-06 52.3 4.1 29 152-180 16-44 (207)
478 COG0529 CysC Adenylylsulfate k 93.7 0.12 2.5E-06 47.5 5.0 29 152-180 17-45 (197)
479 cd03213 ABCG_EPDR ABCG transpo 93.6 0.29 6.3E-06 47.3 8.3 24 157-180 34-57 (194)
480 PRK14721 flhF flagellar biosyn 93.6 0.34 7.3E-06 52.3 9.4 23 158-180 191-213 (420)
481 PRK10416 signal recognition pa 93.6 0.19 4.1E-06 52.5 7.3 38 157-197 113-150 (318)
482 PRK08927 fliI flagellum-specif 93.6 0.2 4.3E-06 54.1 7.6 89 158-252 158-259 (442)
483 TIGR00764 lon_rel lon-related 93.6 0.14 3.1E-06 58.5 6.9 72 137-215 18-91 (608)
484 PRK13949 shikimate kinase; Pro 93.6 0.052 1.1E-06 51.0 2.9 21 160-180 3-23 (169)
485 COG0467 RAD55 RecA-superfamily 93.6 0.09 1.9E-06 53.6 4.9 51 157-212 22-72 (260)
486 cd01136 ATPase_flagellum-secre 93.6 0.33 7.1E-06 50.5 8.9 89 158-252 69-170 (326)
487 PRK10875 recD exonuclease V su 93.6 0.26 5.6E-06 56.2 8.8 115 158-274 167-299 (615)
488 PRK10078 ribose 1,5-bisphospho 93.6 0.057 1.2E-06 51.8 3.2 22 159-180 3-24 (186)
489 KOG0727 26S proteasome regulat 93.6 0.1 2.3E-06 50.2 4.7 45 137-181 155-212 (408)
490 cd03243 ABC_MutS_homologs The 93.6 0.086 1.9E-06 51.4 4.4 22 159-180 30-51 (202)
491 PF13504 LRR_7: Leucine rich r 93.6 0.05 1.1E-06 29.1 1.5 17 717-733 1-17 (17)
492 COG1703 ArgK Putative periplas 93.5 0.074 1.6E-06 53.2 3.8 61 147-208 38-100 (323)
493 PRK00300 gmk guanylate kinase; 93.5 0.055 1.2E-06 52.9 3.0 24 157-180 4-27 (205)
494 PF01078 Mg_chelatase: Magnesi 93.5 0.12 2.5E-06 49.6 5.0 42 137-180 3-44 (206)
495 PRK15064 ABC transporter ATP-b 93.5 0.57 1.2E-05 53.3 11.6 23 158-180 27-49 (530)
496 PTZ00185 ATPase alpha subunit; 93.5 0.33 7.2E-06 52.8 8.9 93 158-252 189-300 (574)
497 TIGR02030 BchI-ChlI magnesium 93.5 0.079 1.7E-06 55.6 4.2 44 137-180 4-47 (337)
498 PF08477 Miro: Miro-like prote 93.5 0.06 1.3E-06 47.2 2.9 22 161-182 2-23 (119)
499 PRK08149 ATP synthase SpaL; Va 93.5 0.22 4.9E-06 53.6 7.7 89 157-251 150-251 (428)
500 KOG1947 Leucine rich repeat pr 93.5 0.0085 1.8E-07 67.4 -3.3 196 520-728 187-412 (482)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-72 Score=639.61 Aligned_cols=604 Identities=20% Similarity=0.271 Sum_probs=443.8
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHhhhhcCCChhHHHHHHHHHHhhhHhhhhcCcccccccccchhHHHHHHHHHhHHhHh
Q 003950 3 KDLLEQLESTLQNSTPMIKEIEKLNQVLDLPKHETDTLIEMMRRGEHLVHKCSRVKWNCFKRYDYAKKIIKLDRSIDTFF 82 (784)
Q Consensus 3 ~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~~~wl~~l~~~~~~aed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (784)
++.+..|++.|..+++++++++.+.........|.+.+++++|+|||.++.|.. +........ .........++..
T Consensus 27 ~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v---~~~~~~~~~-~l~~~~~~~~~~c 102 (889)
T KOG4658|consen 27 DNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLV---EEIERKAND-LLSTRSVERQRLC 102 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhH-HhhhhHHHHHHHh
Confidence 567999999999999999999999988888999999999999999999999997 322221111 0000000111111
Q ss_pred hccchhHhhhhhhHHHHHHHHHHHHHhhcccCcccccccc-cccc-cCCCCCCCCCCCCCCCCchhHHHHHHHHhCCcEE
Q 003950 83 RTYIPLQQTRDNRVIMVDLKEVHMMVKRLSGNDRTSWMFN-QVGV-AGACSAPDPPPVTPGLDVPLQELKLELFKDGRQV 160 (784)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~v 160 (784)
..........++.....++-++...++.+........... ..+. .....+..+... ||.++.++++.+.|.+++..+
T Consensus 103 ~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~i 181 (889)
T KOG4658|consen 103 LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGI 181 (889)
T ss_pred hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCE
Confidence 1133445556666677777777777777753322211111 1111 111222222223 999999999999999888899
Q ss_pred EEEEcCCCCcHHHHHHHHhcccc-cccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-ccc
Q 003950 161 IVVSAPGGYGKTTLVKKLCKDDQ-VLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPI 238 (784)
Q Consensus 161 v~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l 238 (784)
++|+||||+||||||+.++|+.. ++.+|+. ++||.||+.++...++++|++.++...+....... +.++..+ +.|
T Consensus 182 v~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~-~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~--~~~~~~i~~~L 258 (889)
T KOG4658|consen 182 VGIYGMGGVGKTTLARQIFNKFDEVGNHFDG-VIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEE--DELASKLLNLL 258 (889)
T ss_pred EEEECCCcccHHHHHHHHhcccchhcccCce-EEEEEEcccccHHhHHHHHHHHhccCCcccchhhH--HHHHHHHHHHh
Confidence 99999999999999999999987 9999998 77999999999999999999998875443322211 3333333 666
Q ss_pred CCCcEEEEEeCCCCCchH--HHhhhhccCCCceEEEecccccc-----cCCCceeccCCCHHHHHHHHHHHhccCCCCCC
Q 003950 239 RPEAILLVLDDVWSGSES--LLQKFKFQLPYYKILVTSRSVFP-----QFGSGYDLKPLNDEAARTLFRYSANLQDGNSY 311 (784)
Q Consensus 239 ~~kr~LlVlDdv~~~~~~--~~~~~~~~~~gs~iivTtR~~~~-----~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~ 311 (784)
++|||||||||||+..+| +..+++....||+|++|||+..+ +....++++.|+++|||.||++.+|.......
T Consensus 259 ~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~ 338 (889)
T KOG4658|consen 259 EGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSH 338 (889)
T ss_pred ccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccc
Confidence 899999999999999875 44556666678999999999843 23458999999999999999999998865554
Q ss_pred CcCHHHHHHHHHHcCCchhHHHHHHhhhCCCC-hHHHHHHHHhhccc-Cccc-CChHHHHHHHHHHHHhccHHHHHHHhh
Q 003950 312 IPDENLVNKILRACKGCPLALTVVGGSLCGKH-PAIWQKRVKEWTQD-VSVF-HSNKEILSCLERSLDALNNEVKECYMD 388 (784)
Q Consensus 312 ~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~~-~~~w~~~l~~~~~~-~~~~-~~~~~i~~~l~~sy~~L~~~~k~cfl~ 388 (784)
+..+++|++|+++|+|+|||+.++|+.|+.|. ..+|+++...+... .... ...+.+.++|.+||+.||+++|.||+|
T Consensus 339 ~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLy 418 (889)
T KOG4658|consen 339 PDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLY 418 (889)
T ss_pred ccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHh
Confidence 55899999999999999999999999999886 77999999877654 2222 235689999999999999889999999
Q ss_pred cCCCCCCcccChHHHHHHHHHhhccChH-------HHHHHHHHhhchhhhhhhhhhcccCCCCCCCCcchhhhhHHHHHH
Q 003950 389 LCSFPEDQRIPITALVDMWMELYELVDE-------LFAIANLHELSNLNLANCVATRKYASDDSCYNDHFVMQHDLLREL 461 (784)
Q Consensus 389 ~a~fp~~~~i~~~~Li~~W~a~~~~~~~-------~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~ 461 (784)
||+||+||.|+++.|+.+|+|||++.+. ++|..|+.+|++++|++.... .++...|+|||+|||+
T Consensus 419 calFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~--------~~~~~~~kmHDvvRe~ 490 (889)
T KOG4658|consen 419 CALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD--------EGRKETVKMHDVVREM 490 (889)
T ss_pred hccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc--------ccceeEEEeeHHHHHH
Confidence 9999999999999999999999998761 589999999999999986331 1455789999999999
Q ss_pred HHHhhccCCccccceeeecCCCCCCchhhHhhcCCCccceeEEeecCCCccCCcccCCCCceEEEEEecCCCCcccChhc
Q 003950 462 AIYQSTLEPIKQRKRLIIDTSGNNFPEWWMDQKQHPLNASLLSISTDETFSSNWYDMEAPEVKVVVLNVRTKKYTLPKFL 541 (784)
Q Consensus 462 a~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~p~~l 541 (784)
|.+++++....... .++... ....+ .........+|++++
T Consensus 491 al~ias~~~~~~e~-~iv~~~-~~~~~--~~~~~~~~~~rr~s~------------------------------------ 530 (889)
T KOG4658|consen 491 ALWIASDFGKQEEN-QIVSDG-VGLSE--IPQVKSWNSVRRMSL------------------------------------ 530 (889)
T ss_pred HHHHhccccccccc-eEEECC-cCccc--cccccchhheeEEEE------------------------------------
Confidence 99999955443222 112211 00000 000011122233332
Q ss_pred cCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccccC
Q 003950 542 EKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAF 620 (784)
Q Consensus 542 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 620 (784)
.+|.+..+ .....++|++|-+..+.. ........++..+
T Consensus 531 --------------------------------------~~~~~~~~~~~~~~~~L~tLll~~n~~--~l~~is~~ff~~m 570 (889)
T KOG4658|consen 531 --------------------------------------MNNKIEHIAGSSENPKLRTLLLQRNSD--WLLEISGEFFRSL 570 (889)
T ss_pred --------------------------------------eccchhhccCCCCCCccceEEEeecch--hhhhcCHHHHhhC
Confidence 22222221 111333566666666642 0111122334478
Q ss_pred CceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEec
Q 003950 621 PNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDI 700 (784)
Q Consensus 621 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 700 (784)
+.|++|||++|...+.+|..|++|.+|+||+++++ .+..+|.++++|..|.+|++..+.....+|.....+++|++|.+
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 99999999999888999999999999999999985 47789999999999999999987777777777777999999988
Q ss_pred cCC
Q 003950 701 SEC 703 (784)
Q Consensus 701 ~~n 703 (784)
...
T Consensus 650 ~~s 652 (889)
T KOG4658|consen 650 PRS 652 (889)
T ss_pred ecc
Confidence 754
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-57 Score=552.60 Aligned_cols=636 Identities=18% Similarity=0.224 Sum_probs=382.9
Q ss_pred hHHHHHHHHHHHHHhhcccCccccccccc---------ccccCCCCCCCCCCCCCCCCchhHHHHHHHH--hCCcEEEEE
Q 003950 95 RVIMVDLKEVHMMVKRLSGNDRTSWMFNQ---------VGVAGACSAPDPPPVTPGLDVPLQELKLELF--KDGRQVIVV 163 (784)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~--~~~~~vv~I 163 (784)
.+...+|+++...++.+.|.....+..+. ....-...++.....+|||+++++++.++|. .+++++|+|
T Consensus 133 ~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI 212 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGI 212 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEE
Confidence 35567777777777777766543332210 1111123334556789999999999999886 556899999
Q ss_pred EcCCCCcHHHHHHHHhcccccccccCCceEEEEe---CCCC-----------C-HHHHHHHHHHHcCCCCCCCCChHHHH
Q 003950 164 SAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV---SQTP-----------N-VKGIVQKVYQHKGYAVPEFQTDEDAI 228 (784)
Q Consensus 164 ~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~~~~~~~~~~ 228 (784)
+||||+||||||+++|+ ++..+|++.+ |+.- +... . ...++.+++..+......... ..
T Consensus 213 ~G~gGiGKTTLA~~l~~--~l~~~F~g~v-fv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~---~~ 286 (1153)
T PLN03210 213 WGSSGIGKTTIARALFS--RLSRQFQSSV-FIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY---HL 286 (1153)
T ss_pred EcCCCCchHHHHHHHHH--HHhhcCCeEE-EeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC---CH
Confidence 99999999999999999 7888998855 5531 1110 1 123444444443221110000 01
Q ss_pred HHHHHHhcccCCCcEEEEEeCCCCCchH--HHhhhhccCCCceEEEecccccc----cCCCceeccCCCHHHHHHHHHHH
Q 003950 229 NDLERLLKPIRPEAILLVLDDVWSGSES--LLQKFKFQLPYYKILVTSRSVFP----QFGSGYDLKPLNDEAARTLFRYS 302 (784)
Q Consensus 229 ~~l~~~~~~l~~kr~LlVlDdv~~~~~~--~~~~~~~~~~gs~iivTtR~~~~----~~~~~~~l~~L~~~~a~~lf~~~ 302 (784)
..++ +++++||+||||||||+...+ +.....+.++||+||||||+... ....+|+++.|++++||+||+++
T Consensus 287 ~~~~---~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~ 363 (1153)
T PLN03210 287 GAME---ERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRS 363 (1153)
T ss_pred HHHH---HHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHH
Confidence 2233 345899999999999986543 33334456789999999999832 24568999999999999999999
Q ss_pred hccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCCChHHHHHHHHhhcccCcccCChHHHHHHHHHHHHhccHH-
Q 003950 303 ANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDALNNE- 381 (784)
Q Consensus 303 a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~- 381 (784)
||+... ++..+.+++++|+++|+|+|||++++|+.|++++..+|+.+++++... .+.+|..+|++||+.|+++
T Consensus 364 Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~-----~~~~I~~~L~~SYd~L~~~~ 437 (1153)
T PLN03210 364 AFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNG-----LDGKIEKTLRVSYDGLNNKK 437 (1153)
T ss_pred hcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----ccHHHHHHHHHhhhccCccc
Confidence 998754 334578999999999999999999999999999999999999988653 3468999999999999874
Q ss_pred HHHHHhhcCCCCCCcccChHHHHHHHHHhhccChHHHHHHHHHhhchhhhhhhhhhcccCCCCCCCCcchhhhhHHHHHH
Q 003950 382 VKECYMDLCSFPEDQRIPITALVDMWMELYELVDELFAIANLHELSNLNLANCVATRKYASDDSCYNDHFVMQHDLLREL 461 (784)
Q Consensus 382 ~k~cfl~~a~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~ 461 (784)
.|.||+++|+||.+..++ .+..|.+.+... ++..++.|+++|||+.. ...+.|||++|+|
T Consensus 438 ~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~----~~~~l~~L~~ksLi~~~-------------~~~~~MHdLl~~~ 497 (1153)
T PLN03210 438 DKAIFRHIACLFNGEKVN---DIKLLLANSDLD----VNIGLKNLVDKSLIHVR-------------EDIVEMHSLLQEM 497 (1153)
T ss_pred hhhhhheehhhcCCCCHH---HHHHHHHhcCCC----chhChHHHHhcCCEEEc-------------CCeEEhhhHHHHH
Confidence 999999999999987553 466787766553 34469999999999752 1358999999999
Q ss_pred HHHhhccCC--ccccceeeecC---------CCC-C----------Cch------hhHhh--------------------
Q 003950 462 AIYQSTLEP--IKQRKRLIIDT---------SGN-N----------FPE------WWMDQ-------------------- 493 (784)
Q Consensus 462 a~~~~~~e~--~~~~~~l~~~~---------~~~-~----------~~~------~~~~~-------------------- 493 (784)
|+.++.++. ...+++++-.. .+. . ..+ .+...
T Consensus 498 ~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~ 577 (1153)
T PLN03210 498 GKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVR 577 (1153)
T ss_pred HHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccce
Confidence 999987663 22333332110 000 0 000 00000
Q ss_pred -------cCCCccceeEEeecCCCccCCcccCCCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCcc
Q 003950 494 -------KQHPLNASLLSISTDETFSSNWYDMEAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQ 566 (784)
Q Consensus 494 -------~~~~~~~r~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 566 (784)
...|...|.|.+..... .+........++..+.|..+. ...+|..+..+++|+.|+++++.. +..++
T Consensus 578 ~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~----l~~ip 651 (1153)
T PLN03210 578 WHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNFRPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKN----LKEIP 651 (1153)
T ss_pred eecCcchhhcCcccEEEEecCCCC-CCCCCcCCccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCC----cCcCC
Confidence 00011222222221100 000000112233333333322 234555566666677776665421 11222
Q ss_pred ccCCCCCCCEEEecccC-CCCc--cccccccCceeeeeeccccccccCcc----------------ccccccCCceEEEE
Q 003950 567 VFGALSNLKRIRLEHVS-LPSL--TTVRMKHLQNVSLVMCNVDQVVQNST----------------FHFSDAFPNLLEID 627 (784)
Q Consensus 567 ~l~~l~~L~~L~L~~n~-l~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~----------------~~~~~~l~~L~~L~ 627 (784)
.++.+++|+.|++++|. +..+ ....+.+|+.|++.+|......+... ..+....++|+.|+
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~ 731 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLD 731 (1153)
T ss_pred ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeee
Confidence 24455556666665543 2222 22334455555555443221111100 00000122334444
Q ss_pred EeCCCCCCCCCccc------------------------------CCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEee
Q 003950 628 IDYCNDLIELPDGL------------------------------CDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLA 677 (784)
Q Consensus 628 L~~~~~~~~lp~~i------------------------------~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~ 677 (784)
+++|.+ ..+|..+ ..+++|+.|+|++|.....+|.+++++++|+.|+++
T Consensus 732 L~~n~i-~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 732 LDETAI-EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE 810 (1153)
T ss_pred cCCCcc-ccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence 443321 2222211 012356666666666666677777777777777777
Q ss_pred cCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCC-chhcHH
Q 003950 678 SCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEE-TAYQWE 756 (784)
Q Consensus 678 ~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~-~~~~~~ 756 (784)
+|+.++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|++++|.++.+|.++.++++|+.|+++++ .....+
T Consensus 811 ~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 811 NCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC
Confidence 777666776655 5677777777777666555532 35677777777777777777777777777776653 222222
Q ss_pred HHhhcCCCcEEeeeccccCc
Q 003950 757 YFQLGQAKFRIEVIQEDINL 776 (784)
Q Consensus 757 ~~~~~lp~L~i~~~~~~~~~ 776 (784)
.....++.|+.....+|.++
T Consensus 887 ~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 887 LNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cccccccCCCeeecCCCccc
Confidence 21222555554444444443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.6e-42 Score=357.39 Aligned_cols=271 Identities=27% Similarity=0.476 Sum_probs=211.8
Q ss_pred CCchhHHHHHHHHh--CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC
Q 003950 142 LDVPLQELKLELFK--DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP 219 (784)
Q Consensus 142 r~~~~~~l~~~L~~--~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 219 (784)
||.++++|.+.|.. ++.++|+|+||||+||||||.+++++..++.+|+. ++|++++...+..+++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~-v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDG-VIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTE-EEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccc-cccccccccccccccccccccccccccc
Confidence 78899999999997 78999999999999999999999997668999966 8899999999999999999999987754
Q ss_pred CC---CChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH--HHhhhhccCCCceEEEecccccccC-----CCceeccC
Q 003950 220 EF---QTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES--LLQKFKFQLPYYKILVTSRSVFPQF-----GSGYDLKP 289 (784)
Q Consensus 220 ~~---~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~--~~~~~~~~~~gs~iivTtR~~~~~~-----~~~~~l~~ 289 (784)
.. .+.......+.+. +.++++||||||||+...+ +...+.....||+||||||+..... ...|++++
T Consensus 80 ~~~~~~~~~~~~~~l~~~---L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 80 SISDPKDIEELQDQLREL---LKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp TSSCCSSHHHHHHHHHHH---HCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred ccccccccccccccchhh---hccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 32 2334444445444 4888999999999987754 4455555667999999999974321 34799999
Q ss_pred CCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCC-ChHHHHHHHHhhcccCccc-CChHHH
Q 003950 290 LNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGK-HPAIWQKRVKEWTQDVSVF-HSNKEI 367 (784)
Q Consensus 290 L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~-~~~~w~~~l~~~~~~~~~~-~~~~~i 367 (784)
|+.+||++||.+.++......+...++.+++|+++|+|+||||+++|++|+.+ +..+|+..++++....... .....+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999876622334567899999999999999999999999544 5788998888766543221 245789
Q ss_pred HHHHHHHHHhccHHHHHHHhhcCCCCCCcccChHHHHHHHHHhhccChH
Q 003950 368 LSCLERSLDALNNEVKECYMDLCSFPEDQRIPITALVDMWMELYELVDE 416 (784)
Q Consensus 368 ~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~~~~~~~ 416 (784)
..++.+||+.||+++|+||+|||+||+++.|+++.|+++|+++|++.+.
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999999999999999998653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=8.7e-21 Score=231.42 Aligned_cols=235 Identities=19% Similarity=0.267 Sum_probs=118.1
Q ss_pred CCcccCCCC---ceEEEEEecCCCCcccChhccCCCCCcEEEeecccc---cCCcCcCccccCCCCCCCEEEecccCCCC
Q 003950 513 SNWYDMEAP---EVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF---FPAELSNIQVFGALSNLKRIRLEHVSLPS 586 (784)
Q Consensus 513 ~~~~~~~~~---~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~---~~~~~~~l~~l~~l~~L~~L~L~~n~l~~ 586 (784)
|.|.++.|. .+..+.|..++....+|..+..+++|++|++++|.+ +|..+ +..+.+|++|++++|.+.+
T Consensus 58 c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~-----~~~l~~L~~L~Ls~n~l~~ 132 (968)
T PLN00113 58 CLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI-----FTTSSSLRYLNLSNNNFTG 132 (968)
T ss_pred CcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHH-----hccCCCCCEEECcCCcccc
Confidence 345554443 233444443333444555666666666666665532 33322 2344555555555555443
Q ss_pred c-cccccccCceeeeeeccccccccCccc--------------------cccccCCceEEEEEeCCCCCCCCCcccCCCC
Q 003950 587 L-TTVRMKHLQNVSLVMCNVDQVVQNSTF--------------------HFSDAFPNLLEIDIDYCNDLIELPDGLCDIV 645 (784)
Q Consensus 587 ~-~~~~l~~L~~L~l~~~~~~~~~~~~~~--------------------~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~ 645 (784)
. +...+++|++|++++|.+....+.... .....+++|++|++++|.+.+.+|..+++++
T Consensus 133 ~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (968)
T PLN00113 133 SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212 (968)
T ss_pred ccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence 2 222344455555544443322111110 0011445555555555555555555555555
Q ss_pred CCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEecc
Q 003950 646 SIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLK 725 (784)
Q Consensus 646 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 725 (784)
+|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|+.|++++|.+.+.+|..++.+++|++|+++
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555566666666
Q ss_pred CCCCC-CcChhhhCCCCCCEEeCCCCch
Q 003950 726 GCSMF-ELPSSILNLENLEVVKCDEETA 752 (784)
Q Consensus 726 ~n~l~-~lp~~l~~l~~L~~L~l~~~~~ 752 (784)
+|.++ .+|..+.++++|+.|++++|..
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 55554 4555555666666666655543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=1.9e-19 Score=219.70 Aligned_cols=238 Identities=20% Similarity=0.255 Sum_probs=186.7
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc---cCCcCcCccccCCCCCCCEEEecccCCCCc---cccccc
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF---FPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMK 593 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~---~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~l~ 593 (784)
+.+++.+.|+.+.....+|. ..+++|++|++++|.+ +|. .++.+++|++|++++|.+.+. ....++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 188 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN------DIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188 (968)
T ss_pred CCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh------HHhcCCCCCEEECccCcccccCChhhhhCc
Confidence 34455555544443333442 3455566666655432 222 256788899999998887654 345678
Q ss_pred cCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCE
Q 003950 594 HLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQM 673 (784)
Q Consensus 594 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 673 (784)
+|++|++.+|.+....+... ..+++|+.|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPREL----GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred CCCeeeccCCCCcCcCChHH----cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 88999998887654433322 37899999999999999999999999999999999999988899999999999999
Q ss_pred EEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC-CcChhhhCCCCCCEEeCCCCch
Q 003950 674 LTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSILNLENLEVVKCDEETA 752 (784)
Q Consensus 674 L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~ 752 (784)
|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+.++++|+.|++++|.++ .+|..+.++++|+.|++++|..
T Consensus 265 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred EECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 999999999999999999999999999999988899999999999999999999987 7888899999999999998876
Q ss_pred hc-HH-HHhhcCCCcEEeee
Q 003950 753 YQ-WE-YFQLGQAKFRIEVI 770 (784)
Q Consensus 753 ~~-~~-~~~~~lp~L~i~~~ 770 (784)
.. .+ .+.. +++|+....
T Consensus 345 ~~~~p~~l~~-~~~L~~L~L 363 (968)
T PLN00113 345 SGEIPKNLGK-HNNLTVLDL 363 (968)
T ss_pred cCcCChHHhC-CCCCcEEEC
Confidence 42 22 2333 677754433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.71 E-value=4.2e-19 Score=185.00 Aligned_cols=156 Identities=21% Similarity=0.313 Sum_probs=117.2
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
.+.||+.++++.|+ +..+|+.+-++++|+.|+||+|. +.++...++...+|++|+++.|. +..+|..+..+++|+.|
T Consensus 220 ~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKL 296 (1255)
T ss_pred hhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHH
Confidence 45666666666653 44556666666677777777654 44455555566667777777644 45788888888888888
Q ss_pred eccCCCCC-CccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHHHHhhcCCCcEEeeeccccCcc
Q 003950 699 DISECLNI-QELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEYFQLGQAKFRIEVIQEDINLY 777 (784)
Q Consensus 699 ~l~~n~~~-~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~lp~L~i~~~~~~~~~~ 777 (784)
.+.+|.+. ..+|+++|++.+|+.+..++|.+.-+|.++++|..|+.|.++.|.+-..+.--+.+|.|++....+..|+-
T Consensus 297 y~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred HhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence 88887654 46899999999999999999999999999999999999999999887776655669999888877665543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=7.7e-18 Score=174.77 Aligned_cols=247 Identities=17% Similarity=0.230 Sum_probs=189.8
Q ss_pred CccceeEEeecCCCccC---CcccCCCCceEEEEEecCCCC-cccC-hhccCCCCCcEEEeecccccCCcCcCccccCCC
Q 003950 497 PLNASLLSISTDETFSS---NWYDMEAPEVKVVVLNVRTKK-YTLP-KFLEKMDKLKVMIVTNYGFFPAELSNIQVFGAL 571 (784)
Q Consensus 497 ~~~~r~lsi~~~~~~~~---~~~~~~~~~l~~l~L~~~~~~-~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l 571 (784)
.....+|.+.++..... .|.+.. .+ +.|.++.+. ..+| ..|+++++|+.|++..|.+--... -.|.+|
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~ln--sL--~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~---ltFqgL 244 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLN--SL--LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG---LTFQGL 244 (873)
T ss_pred CCCceEEeeccccccccccccccccc--hh--eeeecccCcccccCHHHhhhcchhhhhhccccceeeehh---hhhcCc
Confidence 34556666665543322 222221 33 344555332 4565 577889999999999875422211 137889
Q ss_pred CCCCEEEecccCCCCc---cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCc
Q 003950 572 SNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIK 648 (784)
Q Consensus 572 ~~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 648 (784)
++|+.|.|..|.+..+ .+..+.++++|++..|++..+...-.. +++.|+.|+|++|.+...-+++....++|+
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf----gLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF----GLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc----ccchhhhhccchhhhheeecchhhhcccce
Confidence 9999999999998777 667889999999999988776544332 889999999999988877788888899999
Q ss_pred EEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccc---hhhhCCCCCCEEecc
Q 003950 649 KLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELP---ERIGELCSLKTLCLK 725 (784)
Q Consensus 649 ~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p---~~l~~l~~L~~L~l~ 725 (784)
.|+|++|.+...-+.++.-|..|++|+|++|++...-...|..+++|+.|+|++|.+...+- ..+..|++|+.|.+.
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence 99999988776667788899999999999988776666778899999999999997765443 346679999999999
Q ss_pred CCCCCCcC-hhhhCCCCCCEEeCCCCchhc
Q 003950 726 GCSMFELP-SSILNLENLEVVKCDEETAYQ 754 (784)
Q Consensus 726 ~n~l~~lp-~~l~~l~~L~~L~l~~~~~~~ 754 (784)
||++..+| ..+..+++|++|++.+|....
T Consensus 401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred CceeeecchhhhccCcccceecCCCCccee
Confidence 99999888 578899999999999886644
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=5.3e-18 Score=176.88 Aligned_cols=209 Identities=23% Similarity=0.340 Sum_probs=133.6
Q ss_pred cccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc----cccccccCceeeeeecccccccc
Q 003950 535 YTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL----TTVRMKHLQNVSLVMCNVDQVVQ 610 (784)
Q Consensus 535 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~L~~L~l~~~~~~~~~~ 610 (784)
..+|..++.+.+|.+|.++.|..+.-. ..++.++.|+.+.+..|++... .+..+..|..|+++.|++.+...
T Consensus 45 ~~vPeEL~~lqkLEHLs~~HN~L~~vh----GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~ 120 (1255)
T KOG0444|consen 45 EQVPEELSRLQKLEHLSMAHNQLISVH----GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT 120 (1255)
T ss_pred hhChHHHHHHhhhhhhhhhhhhhHhhh----hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch
Confidence 567888888888888877776432211 1246677778888888777554 23356777788888887766544
Q ss_pred CccccccccCCceEEEEEeCCCCCCCCCcc-cCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCC-------
Q 003950 611 NSTFHFSDAFPNLLEIDIDYCNDLIELPDG-LCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDL------- 682 (784)
Q Consensus 611 ~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~------- 682 (784)
... ...++-+|+|++|++. .+|.. +.++..|-+||||+|. +..+|+.+..|.+|++|+|++|++.
T Consensus 121 ~LE-----~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL 193 (1255)
T KOG0444|consen 121 NLE-----YAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL 193 (1255)
T ss_pred hhh-----hhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence 322 4567788888887544 44543 4577788888888765 6667777778888888888877543
Q ss_pred ------------------CCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCE
Q 003950 683 ------------------SALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEV 744 (784)
Q Consensus 683 ------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~ 744 (784)
..+|.++..+.+|..+++|.| .+..+|..+.++++|+.|+|++|.|+++......-.+|+.
T Consensus 194 PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLET 272 (1255)
T ss_pred ccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhh
Confidence 245555666666666666665 3455666666666666666666666655444444555555
Q ss_pred EeCCCCchhcH
Q 003950 745 VKCDEETAYQW 755 (784)
Q Consensus 745 L~l~~~~~~~~ 755 (784)
|+++.|.+...
T Consensus 273 LNlSrNQLt~L 283 (1255)
T KOG0444|consen 273 LNLSRNQLTVL 283 (1255)
T ss_pred hccccchhccc
Confidence 55555555443
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.63 E-value=5.4e-15 Score=180.80 Aligned_cols=220 Identities=24% Similarity=0.373 Sum_probs=157.1
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc---cCCcCcCccccCCCCCCCEEEecccCCCCccccccccCc
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF---FPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKHLQ 596 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~---~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~ 596 (784)
+++++.+.|..+.....+|..+.++++|+.|++++|.. +|.. .++++|+.|++++|......+....+|+
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-------i~l~sL~~L~Lsgc~~L~~~p~~~~nL~ 728 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-------INLKSLYRLNLSGCSRLKSFPDISTNIS 728 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-------CCCCCCCEEeCCCCCCccccccccCCcC
Confidence 45666666666655566777777777777777776522 2322 1345555555555432111112233445
Q ss_pred eeeeeeccccccccCc----------------------c---ccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEE
Q 003950 597 NVSLVMCNVDQVVQNS----------------------T---FHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLR 651 (784)
Q Consensus 597 ~L~l~~~~~~~~~~~~----------------------~---~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 651 (784)
.|++.++.+..+.... . .......++|+.|+|++|...+.+|.+++++++|+.|+
T Consensus 729 ~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 729 WLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred eeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 5555544433322110 0 00111346899999999999999999999999999999
Q ss_pred ccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCC-CC
Q 003950 652 ITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCS-MF 730 (784)
Q Consensus 652 L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~-l~ 730 (784)
|++|..++.+|..+ ++++|++|++++|..+..+|.. .++|+.|+|++|. +..+|.++..+++|++|++++|+ ++
T Consensus 809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~-i~~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTG-IEEVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCC-CccChHHHhcCCCCCEEECCCCCCcC
Confidence 99998899999876 7999999999999988888764 3689999999984 56789999999999999999977 88
Q ss_pred CcChhhhCCCCCCEEeCCCCc
Q 003950 731 ELPSSILNLENLEVVKCDEET 751 (784)
Q Consensus 731 ~lp~~l~~l~~L~~L~l~~~~ 751 (784)
.+|..+.++++|+.++++++.
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCcccccccCCCeeecCCCc
Confidence 999888899999999877653
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=1.8e-16 Score=164.79 Aligned_cols=134 Identities=15% Similarity=0.098 Sum_probs=67.7
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
++++|+.|.|..|++...-...|-.|.+++.|+|..|.+...--.++..|+.|+.|+++.|.+...-+.+....++|+.|
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence 44444555554444333333334445555555555554333333444555555555555555544445555555555555
Q ss_pred eccCCCCCCccchhhhCCCCCCEEeccCCCCCCcCh-hhhCCCCCCEEeCCCCch
Q 003950 699 DISECLNIQELPERIGELCSLKTLCLKGCSMFELPS-SILNLENLEVVKCDEETA 752 (784)
Q Consensus 699 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~ 752 (784)
+|+.|.+...-+..|..|..|+.|.|++|++..+-. .+..+++|+.|+++.|..
T Consensus 323 dLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 323 DLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred eccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 555554444444455555555555555555554432 244555666666655543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=4.8e-17 Score=161.83 Aligned_cols=211 Identities=23% Similarity=0.331 Sum_probs=155.8
Q ss_pred CcccChhccCCCCCcEEEeeccc--ccCCcCcCc-----------------cccCCCCCCCEEEecccCCCCc--ccccc
Q 003950 534 KYTLPKFLEKMDKLKVMIVTNYG--FFPAELSNI-----------------QVFGALSNLKRIRLEHVSLPSL--TTVRM 592 (784)
Q Consensus 534 ~~~~p~~l~~l~~L~~L~l~~~~--~~~~~~~~l-----------------~~l~~l~~L~~L~L~~n~l~~~--~~~~l 592 (784)
...+|++++.+.+++.|+++.|. .+|..+.++ +.++.+..|..++..+|.++.+ ....+
T Consensus 80 l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~ 159 (565)
T KOG0472|consen 80 LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNL 159 (565)
T ss_pred hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHH
Confidence 35667777777777777776652 244443221 1234455555566666666555 33345
Q ss_pred ccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCC
Q 003950 593 KHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQ 672 (784)
Q Consensus 593 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 672 (784)
.+|..|++.+|.+..+.+... .++.|+.|+...| ..+.+|+.++++.+|..|++..|. +..+| .|..+..|.
T Consensus 160 ~~l~~l~~~~n~l~~l~~~~i-----~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~ 231 (565)
T KOG0472|consen 160 SKLSKLDLEGNKLKALPENHI-----AMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLK 231 (565)
T ss_pred HHHHHhhccccchhhCCHHHH-----HHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHH
Confidence 566666666666665554433 4678888888876 677888889999999999998875 67778 688888999
Q ss_pred EEEeecCCCCCCCccccc-CCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCc
Q 003950 673 MLTLASCTDLSALPDTIG-NLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEET 751 (784)
Q Consensus 673 ~L~L~~~~~~~~~p~~~~-~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~ 751 (784)
.|.++. +.++.+|.... ++++|..||+..| .++.+|.++..+.+|+.|++++|.++.+|.++++| .|+.|-+.+|.
T Consensus 232 Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 232 ELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHhcc-cHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 999877 45567776655 8999999999998 67889999999999999999999999999999999 99999999987
Q ss_pred hhcH
Q 003950 752 AYQW 755 (784)
Q Consensus 752 ~~~~ 755 (784)
....
T Consensus 309 lrTi 312 (565)
T KOG0472|consen 309 LRTI 312 (565)
T ss_pred hHHH
Confidence 7653
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.52 E-value=2.2e-15 Score=150.14 Aligned_cols=111 Identities=27% Similarity=0.349 Sum_probs=70.2
Q ss_pred cCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCC
Q 003950 641 LCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLK 720 (784)
Q Consensus 641 i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 720 (784)
++.+++|..|++++| .+..+|..++.+..|++|+++.|+ ...+|..+..+..|+.+..++|+....-|.++.+|.+|.
T Consensus 431 l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 334444555555542 344455555555555555555442 234444444444444444444433333344589999999
Q ss_pred EEeccCCCCCCcChhhhCCCCCCEEeCCCCchh
Q 003950 721 TLCLKGCSMFELPSSILNLENLEVVKCDEETAY 753 (784)
Q Consensus 721 ~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~ 753 (784)
+|++.+|.+..+|+.+++|++|++|.+++|...
T Consensus 509 tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 999999999999999999999999999998765
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.51 E-value=2e-12 Score=157.27 Aligned_cols=296 Identities=15% Similarity=0.167 Sum_probs=183.6
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeC-CCCCHHHHHHHH
Q 003950 132 APDPPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS-QTPNVKGIVQKV 210 (784)
Q Consensus 132 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~-~~~~~~~~~~~i 210 (784)
+|..+..+|-|+.-.+.+.+ ....+++.|.|++|.||||++..... .++ .+.|+++. ...++..+...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~------~~~-~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAA------GKN-NLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHH------hCC-CeEEEecCcccCCHHHHHHHH
Confidence 44455667777654444322 23578999999999999999999875 233 37799996 445667777777
Q ss_pred HHHcCCCCCCC-C---------ChHHHHHHHHHHhccc--CCCcEEEEEeCCCCCchH----HHhhhhcc-CCCceEEEe
Q 003950 211 YQHKGYAVPEF-Q---------TDEDAINDLERLLKPI--RPEAILLVLDDVWSGSES----LLQKFKFQ-LPYYKILVT 273 (784)
Q Consensus 211 ~~~l~~~~~~~-~---------~~~~~~~~l~~~~~~l--~~kr~LlVlDdv~~~~~~----~~~~~~~~-~~gs~iivT 273 (784)
+..++...+.. + ........+..++..+ .+.+++|||||+...++. .+..+... .++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 77764221111 0 0011112233333222 268999999999765421 34444433 446788899
Q ss_pred ccccccc-------CCCceecc----CCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCC
Q 003950 274 SRSVFPQ-------FGSGYDLK----PLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGK 342 (784)
Q Consensus 274 tR~~~~~-------~~~~~~l~----~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~ 342 (784)
||..... .+....+. +|+.+|+.++|...... ....+.+.+|.+.|+|.|+++..++..+...
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~------~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS------PIEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC------CCCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 9985211 12244555 99999999999765422 1236778899999999999999888776543
Q ss_pred ChHHHHHHHHhhcccCcccCChHHHHHHHH-HHHHhccHHHHHHHhhcCCCCCCcccChHHHHHHHHHhhccChHHHHHH
Q 003950 343 HPAIWQKRVKEWTQDVSVFHSNKEILSCLE-RSLDALNNEVKECYMDLCSFPEDQRIPITALVDMWMELYELVDELFAIA 421 (784)
Q Consensus 343 ~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~-~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~ 421 (784)
.... ......+.. .....+...+. ..++.||++.+..+...|+++ .|+.+.+-.. ...+ .+..
T Consensus 233 ~~~~-~~~~~~~~~-----~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~~~-~~~~ 296 (903)
T PRK04841 233 NSSL-HDSARRLAG-----INASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TGEE-NGQM 296 (903)
T ss_pred CCch-hhhhHhhcC-----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cCCC-cHHH
Confidence 2100 001111110 01234555444 348899999999999999986 3443322211 1122 5688
Q ss_pred HHHhhchhhhhhhhhhcccCCCCCCCCcchhhhhHHHHHHHHHhhcc
Q 003950 422 NLHELSNLNLANCVATRKYASDDSCYNDHFVMQHDLLRELAIYQSTL 468 (784)
Q Consensus 422 ~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~ 468 (784)
.+++|.+.+++.... .+....|+.|++++++.+.....
T Consensus 297 ~L~~l~~~~l~~~~~---------~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 297 RLEELERQGLFIQRM---------DDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred HHHHHHHCCCeeEee---------cCCCCEEehhHHHHHHHHHHHHh
Confidence 999999999964210 11224578899999999876533
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=3.6e-16 Score=137.76 Aligned_cols=165 Identities=25% Similarity=0.449 Sum_probs=106.2
Q ss_pred cCCCCCCCEEEecccCCCCc--cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCC
Q 003950 568 FGALSNLKRIRLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIV 645 (784)
Q Consensus 568 l~~l~~L~~L~L~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~ 645 (784)
+-.+++...|.|++|.++.. .+..+.+|+.|++.+|++..+..... .+++|+.|+++-| .+..+|..|+.++
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is-----sl~klr~lnvgmn-rl~~lprgfgs~p 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS-----SLPKLRILNVGMN-RLNILPRGFGSFP 102 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh-----hchhhhheecchh-hhhcCccccCCCc
Confidence 34455666677777777665 34466666777776666655544332 5667777777655 3445677777777
Q ss_pred CCcEEEccCCCCCC-CCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEec
Q 003950 646 SIKKLRITNCHKLS-ALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCL 724 (784)
Q Consensus 646 ~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 724 (784)
-|+.||+++|.+.. .+|..+..++.|+-|.++.|. .+.+|..++++++|+.|.+..|. +-.+|..++.++.|++|++
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence 77777777665433 456666666667777776644 35667777777777777777763 3356777777777777777
Q ss_pred cCCCCCCcChhhhCCC
Q 003950 725 KGCSMFELPSSILNLE 740 (784)
Q Consensus 725 ~~n~l~~lp~~l~~l~ 740 (784)
.+|.++.+|+.++++.
T Consensus 181 qgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 181 QGNRLTVLPPELANLD 196 (264)
T ss_pred ccceeeecChhhhhhh
Confidence 7777777776665543
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=5.5e-16 Score=136.56 Aligned_cols=157 Identities=22% Similarity=0.373 Sum_probs=139.9
Q ss_pred ccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCC
Q 003950 591 RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVN 670 (784)
Q Consensus 591 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 670 (784)
.+++++.|.++.|.+..+.+... .+.+|++|++++| ...++|.+++.+++|+.|+++-|. +..+|..++.++-
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia-----~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~ 103 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIA-----ELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPA 103 (264)
T ss_pred chhhhhhhhcccCceeecCCcHH-----Hhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCch
Confidence 67888899999999888777654 6889999999987 567789999999999999999765 7789999999999
Q ss_pred CCEEEeecCCCCC-CCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCC
Q 003950 671 LQMLTLASCTDLS-ALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDE 749 (784)
Q Consensus 671 L~~L~L~~~~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~ 749 (784)
|+.|++++|+..+ .+|..|..++.|+.|+|++| -...+|+.++++++|+.|.+..|.+-.+|..++.|+.|+.|.+.+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence 9999999988765 68999999999999999998 457889999999999999999999999999999999999999999
Q ss_pred CchhcH
Q 003950 750 ETAYQW 755 (784)
Q Consensus 750 ~~~~~~ 755 (784)
|+....
T Consensus 183 nrl~vl 188 (264)
T KOG0617|consen 183 NRLTVL 188 (264)
T ss_pred ceeeec
Confidence 887654
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=1.8e-12 Score=148.18 Aligned_cols=162 Identities=18% Similarity=0.247 Sum_probs=87.3
Q ss_pred CCCEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEc
Q 003950 573 NLKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRI 652 (784)
Q Consensus 573 ~L~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 652 (784)
+|+.|++++|.+..++..-..+|+.|++++|++..+... ..++|+.|++++|.+. .+|..+. ++|++|++
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~-------lp~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~L 332 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAH-------LPSGITHLNVQSNSLT-ALPETLP--PGLKTLEA 332 (754)
T ss_pred CCCEEECcCCccCccccccCCCCcEEECCCCccccCccc-------chhhHHHHHhcCCccc-cCCcccc--ccceeccc
Confidence 455555555555544322234555566555555433211 1124555566655443 2343332 46666666
Q ss_pred cCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCc
Q 003950 653 TNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL 732 (784)
Q Consensus 653 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l 732 (784)
++|.+ ..+|..+. ++|+.|++++|.+. .+|..+. ++|+.|+|++|.+. .+|..+. .+|+.|++++|.++.+
T Consensus 333 s~N~L-t~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 333 GENAL-TSLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRL 403 (754)
T ss_pred cCCcc-ccCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccC
Confidence 66653 33555443 56777777765543 4555442 46777777776433 4555543 2566677777777666
Q ss_pred Chhhh----CCCCCCEEeCCCCchh
Q 003950 733 PSSIL----NLENLEVVKCDEETAY 753 (784)
Q Consensus 733 p~~l~----~l~~L~~L~l~~~~~~ 753 (784)
|..+. .++++..+++.+|...
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCCcc
Confidence 65443 3366667777666554
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=4.4e-12 Score=144.11 Aligned_cols=212 Identities=19% Similarity=0.181 Sum_probs=123.5
Q ss_pred ceEEEEEecCCCCcccChhccCCCCCcEEEeecccc--cCCcCcCcccc-------C----CCCCCCEEEecccCCCCcc
Q 003950 522 EVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVF-------G----ALSNLKRIRLEHVSLPSLT 588 (784)
Q Consensus 522 ~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l-------~----~l~~L~~L~L~~n~l~~~~ 588 (784)
.++.+.+..+. ...+|. .+++|++|++++|.+ +|.....+..+ . .+.+|+.|++++|.++.++
T Consensus 223 ~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP 298 (788)
T PRK15387 223 HITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP 298 (788)
T ss_pred CCCEEEccCCc-CCCCCC---CCCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccccc
Confidence 45556655543 244564 257889999988743 33222111110 0 1234566666666666553
Q ss_pred ccccccCceeeeeeccccccccCcc------------ccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCC
Q 003950 589 TVRMKHLQNVSLVMCNVDQVVQNST------------FHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCH 656 (784)
Q Consensus 589 ~~~l~~L~~L~l~~~~~~~~~~~~~------------~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 656 (784)
. .+++|+.|++++|.+..+..... ..+.....+|++|+|++|++. .+|.. ..+|+.|++++|.
T Consensus 299 ~-~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~ 373 (788)
T PRK15387 299 V-LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNR 373 (788)
T ss_pred c-cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC---Ccccceehhhccc
Confidence 2 34667777777776665432100 000000124555555554333 23331 1244455555543
Q ss_pred CCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhh
Q 003950 657 KLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSI 736 (784)
Q Consensus 657 ~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l 736 (784)
+..+|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|.+ ..+|.. ..+|+.|++++|.++.+|..+
T Consensus 374 -L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~L-ssIP~l---~~~L~~L~Ls~NqLt~LP~sl 441 (788)
T PRK15387 374 -LTSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRL-TSLPML---PSGLLSLSVYRNQLTRLPESL 441 (788)
T ss_pred -cccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcC-CCCCcc---hhhhhhhhhccCcccccChHH
Confidence 2234432 246788888876654 46543 35788889998864 456753 346888999999999999999
Q ss_pred hCCCCCCEEeCCCCchhc
Q 003950 737 LNLENLEVVKCDEETAYQ 754 (784)
Q Consensus 737 ~~l~~L~~L~l~~~~~~~ 754 (784)
.++++|+.|++++|....
T Consensus 442 ~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 442 IHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhccCCCeEECCCCCCCc
Confidence 999999999999997754
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=7e-12 Score=143.47 Aligned_cols=222 Identities=19% Similarity=0.263 Sum_probs=152.6
Q ss_pred CceEEEEEecCCCCcccChhccCCCCCcEEEeecccc--cCCcCcCccccCCCCCCCEEEecccCCCCccccccccCcee
Q 003950 521 PEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKHLQNV 598 (784)
Q Consensus 521 ~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L 598 (784)
+.++.+.|..+.. ..+|..+. ++|++|++++|.+ +|.. -..+|+.|+|++|.+..++..-..+|+.|
T Consensus 199 ~~L~~L~Ls~N~L-tsLP~~l~--~nL~~L~Ls~N~LtsLP~~--------l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNNEL-KSLPENLQ--GNIKTLYANSNQLTSIPAT--------LPDTIQEMELSINRITELPERLPSALQSL 267 (754)
T ss_pred cCCcEEEecCCCC-CcCChhhc--cCCCEEECCCCccccCChh--------hhccccEEECcCCccCcCChhHhCCCCEE
Confidence 3556666655533 45676554 5888888888743 2222 12468888888888887754445678888
Q ss_pred eeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeec
Q 003950 599 SLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLAS 678 (784)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~ 678 (784)
++++|++..+... ..++|+.|++++|++. .+|..+. .+|++|++++|.+. .+|..+ .++|++|++++
T Consensus 268 ~Ls~N~L~~LP~~-------l~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~ 334 (754)
T PRK15370 268 DLFHNKISCLPEN-------LPEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGE 334 (754)
T ss_pred ECcCCccCccccc-------cCCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccC
Confidence 8888877654321 1257889999888655 4565443 47888899887644 566544 36899999998
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHH--
Q 003950 679 CTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWE-- 756 (784)
Q Consensus 679 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~-- 756 (784)
|.+. .+|..+. ++|+.|++++|.+ ..+|..+. ++|+.|++++|.++.+|..+.. +|+.|++++|....++
T Consensus 335 N~Lt-~LP~~l~--~sL~~L~Ls~N~L-~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~~--sL~~LdLs~N~L~~LP~s 406 (754)
T PRK15370 335 NALT-SLPASLP--PELQVLDVSKNQI-TVLPETLP--PTITTLDVSRNALTNLPENLPA--ALQIMQASRNNLVRLPES 406 (754)
T ss_pred Cccc-cCChhhc--CcccEEECCCCCC-CcCChhhc--CCcCEEECCCCcCCCCCHhHHH--HHHHHhhccCCcccCchh
Confidence 7654 5776653 6899999999865 46776653 6899999999999999987653 6888899888776543
Q ss_pred --HHhhcCCCc-EEeeecccc
Q 003950 757 --YFQLGQAKF-RIEVIQEDI 774 (784)
Q Consensus 757 --~~~~~lp~L-~i~~~~~~~ 774 (784)
.+...+|.+ .+....|++
T Consensus 407 l~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHHhhcCCCccEEEeeCCCc
Confidence 222224555 355555555
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=8.5e-13 Score=140.04 Aligned_cols=233 Identities=19% Similarity=0.139 Sum_probs=160.4
Q ss_pred eEEEEEecCCCC----cccChhccCCCCCcEEEeeccccc--CCcCcCc-cccCCCCCCCEEEecccCCCCc---ccccc
Q 003950 523 VKVVVLNVRTKK----YTLPKFLEKMDKLKVMIVTNYGFF--PAELSNI-QVFGALSNLKRIRLEHVSLPSL---TTVRM 592 (784)
Q Consensus 523 l~~l~L~~~~~~----~~~p~~l~~l~~L~~L~l~~~~~~--~~~~~~l-~~l~~l~~L~~L~L~~n~l~~~---~~~~l 592 (784)
++.+.+..+... ..++..+...++|+.|+++++... +..+..+ ..+..+++|+.|++++|.+... ....+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 555555555431 246667788888999999886443 2322211 2356788999999999988643 22233
Q ss_pred ---ccCceeeeeeccccccccCccccccccC-CceEEEEEeCCCCCCC----CCcccCCCCCCcEEEccCCCCCC----C
Q 003950 593 ---KHLQNVSLVMCNVDQVVQNSTFHFSDAF-PNLLEIDIDYCNDLIE----LPDGLCDIVSIKKLRITNCHKLS----A 660 (784)
Q Consensus 593 ---~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~L~~~~~~~----~ 660 (784)
++|+.|++++|.+..............+ ++|+.|++++|.+.+. ++..+..+.+|++|++++|.+.+ .
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 3499999999877532111111112245 8999999999987742 44556777899999999987663 2
Q ss_pred CchhccCCCCCCEEEeecCCCCCC----CcccccCCCCCCEEeccCCCCCCccchhhh-----CCCCCCEEeccCCCCC-
Q 003950 661 LPEGIGKLVNLQMLTLASCTDLSA----LPDTIGNLSNLNFLDISECLNIQELPERIG-----ELCSLKTLCLKGCSMF- 730 (784)
Q Consensus 661 lp~~l~~l~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~-----~l~~L~~L~l~~n~l~- 730 (784)
++..+..+++|++|++++|.+... ++..+..+++|++|++++|......+..+. ..+.|+.|++++|.++
T Consensus 185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264 (319)
T ss_pred HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence 445566778999999999876532 445667789999999999976653222222 2479999999999986
Q ss_pred ----CcChhhhCCCCCCEEeCCCCchhcH
Q 003950 731 ----ELPSSILNLENLEVVKCDEETAYQW 755 (784)
Q Consensus 731 ----~lp~~l~~l~~L~~L~l~~~~~~~~ 755 (784)
.++..+..+++|+.+++++|.....
T Consensus 265 ~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 265 DGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 3455677789999999999877654
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=1.6e-13 Score=150.79 Aligned_cols=203 Identities=22% Similarity=0.331 Sum_probs=139.4
Q ss_pred cccChhccCCCCCcEEEeeccc--ccCCcCcCccccCCCCCCCEEEecccCCCCcccccccc----Cceeeeeecccccc
Q 003950 535 YTLPKFLEKMDKLKVMIVTNYG--FFPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKH----LQNVSLVMCNVDQV 608 (784)
Q Consensus 535 ~~~p~~l~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~----L~~L~l~~~~~~~~ 608 (784)
..+|..+..+.+|++|.+..|. .+|.. +..++.|++|+|..|.+..++...+.. |+.|..+.+.+...
T Consensus 277 ~~lp~ri~~~~~L~~l~~~~nel~yip~~------le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 277 VALPLRISRITSLVSLSAAYNELEYIPPF------LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred HhhHHHHhhhhhHHHHHhhhhhhhhCCCc------ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 3344444444444444444431 23332 345777788888888777764322221 33333333333332
Q ss_pred ccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCc-hhccCCCCCCEEEeecCCCCCCCcc
Q 003950 609 VQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALP-EGIGKLVNLQMLTLASCTDLSALPD 687 (784)
Q Consensus 609 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~ 687 (784)
..... ..++.|+.|++.+|.++...-+.+.++++|+.|+|++|. ++.+| ..+.++..|+.|+|+| +.+..+|.
T Consensus 351 p~~~e----~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSG-NkL~~Lp~ 424 (1081)
T KOG0618|consen 351 PSYEE----NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSG-NKLTTLPD 424 (1081)
T ss_pred ccccc----hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhccc-chhhhhhH
Confidence 21111 145678889999988876655558889999999999986 55566 4678999999999999 45678899
Q ss_pred cccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC--CcChhhhCCCCCCEEeCCCCch
Q 003950 688 TIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF--ELPSSILNLENLEVVKCDEETA 752 (784)
Q Consensus 688 ~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~~~~ 752 (784)
++..+..|++|...+| .+..+| .+..++.|+.+|++.|.++ .+|..... ++|++|++++|+-
T Consensus 425 tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 9999999999998887 566778 7899999999999999988 44444333 7999999999974
No 21
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=1.2e-09 Score=119.21 Aligned_cols=285 Identities=13% Similarity=0.131 Sum_probs=165.7
Q ss_pred CCCCCCCCCchhHHHHHHHH----hCCcEEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCCCCHHHHHHH
Q 003950 135 PPPVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQK 209 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~ 209 (784)
.|+.++||++++++|...+. ......+.|+|++|+|||++++.++++ ..... ...++++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 55789999999999999985 234567889999999999999999984 33322 233456777777788899999
Q ss_pred HHHHcCCC-CCCC-CChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc----hHHHhhhh---ccCCCce--EEEeccccc
Q 003950 210 VYQHKGYA-VPEF-QTDEDAINDLERLLKPIRPEAILLVLDDVWSGS----ESLLQKFK---FQLPYYK--ILVTSRSVF 278 (784)
Q Consensus 210 i~~~l~~~-~~~~-~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----~~~~~~~~---~~~~gs~--iivTtR~~~ 278 (784)
+++++... .+.. .+.......+.+.+.. .+++.+||||+++... ...+..+. ...++++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDE-RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 99998752 2211 1223333444444321 3567899999997642 22222221 1223433 555554431
Q ss_pred -----------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHH----cCCchhHHHHHHhhh----
Q 003950 279 -----------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRA----CKGCPLALTVVGGSL---- 339 (784)
Q Consensus 279 -----------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~----~~g~PLai~~~~~~L---- 339 (784)
......+.+++++.++..+++..++...-. ...-.++..+.|++. .|..+.|+.++-...
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~-~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFY-PGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcc-cCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 001236789999999999999877632110 001123444444444 455777777654322
Q ss_pred -CCC---ChHHHHHHHHhhcccCcccCChHHHHHHHHHHHHhccHHHHHHHhhcCCC-CC-CcccChHHHHHHH--HHh-
Q 003950 340 -CGK---HPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDALNNEVKECYMDLCSF-PE-DQRIPITALVDMW--MEL- 410 (784)
Q Consensus 340 -~~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~f-p~-~~~i~~~~Li~~W--~a~- 410 (784)
++. +.++...++.+.. .....-.+..||.+.|..+..++-. .. ...+....+...- ++.
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 111 2444444444321 1233456789999887776655422 21 1234555554332 111
Q ss_pred hccCh--HHHHHHHHHhhchhhhhhhh
Q 003950 411 YELVD--ELFAIANLHELSNLNLANCV 435 (784)
Q Consensus 411 ~~~~~--~~~~~~~l~~L~~~sli~~~ 435 (784)
..+.+ .....+|+..|...++|...
T Consensus 332 ~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 12221 13667799999999999753
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=1.3e-12 Score=138.73 Aligned_cols=216 Identities=20% Similarity=0.172 Sum_probs=148.7
Q ss_pred ccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-------ccccc-ccCceeeeeeccccc
Q 003950 536 TLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-------TTVRM-KHLQNVSLVMCNVDQ 607 (784)
Q Consensus 536 ~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-------~~~~l-~~L~~L~l~~~~~~~ 607 (784)
.++..+..+++|+.|++++|.+.......+..+...++|++|++++|.++.. ....+ ++|+.|++.+|.+..
T Consensus 72 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 151 (319)
T cd00116 72 SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG 151 (319)
T ss_pred HHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence 3456788899999999998755321111111111115699999999998742 22345 789999999998764
Q ss_pred cccCccccccccCCceEEEEEeCCCCCCC----CCcccCCCCCCcEEEccCCCCCCC----CchhccCCCCCCEEEeecC
Q 003950 608 VVQNSTFHFSDAFPNLLEIDIDYCNDLIE----LPDGLCDIVSIKKLRITNCHKLSA----LPEGIGKLVNLQMLTLASC 679 (784)
Q Consensus 608 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~ 679 (784)
.........+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+... ++..+..+++|++|++++|
T Consensus 152 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 152 ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 22111222233667899999999987642 344556678999999999876533 4455678899999999998
Q ss_pred CCCCCCccccc-----CCCCCCEEeccCCCCC----CccchhhhCCCCCCEEeccCCCCCC-----cChhhhCC-CCCCE
Q 003950 680 TDLSALPDTIG-----NLSNLNFLDISECLNI----QELPERIGELCSLKTLCLKGCSMFE-----LPSSILNL-ENLEV 744 (784)
Q Consensus 680 ~~~~~~p~~~~-----~l~~L~~L~l~~n~~~----~~~p~~l~~l~~L~~L~l~~n~l~~-----lp~~l~~l-~~L~~ 744 (784)
.+....+..+. ..+.|++|++++|.+. ..++..+..+++|+++++++|.++. +...+... +.|+.
T Consensus 232 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~ 311 (319)
T cd00116 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELES 311 (319)
T ss_pred cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhh
Confidence 86642222221 2479999999999765 2345566778999999999999983 33344445 68888
Q ss_pred EeCCCCc
Q 003950 745 VKCDEET 751 (784)
Q Consensus 745 L~l~~~~ 751 (784)
+++.++.
T Consensus 312 ~~~~~~~ 318 (319)
T cd00116 312 LWVKDDS 318 (319)
T ss_pred cccCCCC
Confidence 8887764
No 23
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.22 E-value=2.9e-09 Score=115.03 Aligned_cols=286 Identities=15% Similarity=0.156 Sum_probs=165.1
Q ss_pred CCCCCCCCCchhHHHHHHHHh----CCcEEEEEEcCCCCcHHHHHHHHhccccccccc-----CCceEEEEeCCCCCHHH
Q 003950 135 PPPVTPGLDVPLQELKLELFK----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-----KDNIFFVTVSQTPNVKG 205 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-----~~~~~wv~~~~~~~~~~ 205 (784)
.|+.++||++++++|..+|.. .....+.|+|++|+|||++++.++++ +.... +...+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345789999999999999873 34568999999999999999999973 22211 13356888877778888
Q ss_pred HHHHHHHHcC---CCCCCCC-ChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc---hHHHhhhhc-----cCC--CceEE
Q 003950 206 IVQKVYQHKG---YAVPEFQ-TDEDAINDLERLLKPIRPEAILLVLDDVWSGS---ESLLQKFKF-----QLP--YYKIL 271 (784)
Q Consensus 206 ~~~~i~~~l~---~~~~~~~-~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~---~~~~~~~~~-----~~~--gs~ii 271 (784)
++..|++++. ...+... +..+....+...+.. .+++++||||+++... +..+..+.. ..+ ...+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNE-RGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh-cCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 9999999883 2222111 122222333333311 3678899999997652 222322221 122 23344
Q ss_pred Eeccccc----------ccC-CCceeccCCCHHHHHHHHHHHhccC--CCCCCCcCHHHHHHHHHHcCCchh-HHHHHHh
Q 003950 272 VTSRSVF----------PQF-GSGYDLKPLNDEAARTLFRYSANLQ--DGNSYIPDENLVNKILRACKGCPL-ALTVVGG 337 (784)
Q Consensus 272 vTtR~~~----------~~~-~~~~~l~~L~~~~a~~lf~~~a~~~--~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 337 (784)
.+|.... ... ...+.+++++.++..+++..++... .....++..+....++....|.|- |+.++-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4443321 011 2358899999999999998876311 111112222345556777778884 3333222
Q ss_pred hh-----CCC---ChHHHHHHHHhhcccCcccCChHHHHHHHHHHHHhccHHHHHHHhhcCCCC--CCcccChHHHHHHH
Q 003950 338 SL-----CGK---HPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDALNNEVKECYMDLCSFP--EDQRIPITALVDMW 407 (784)
Q Consensus 338 ~L-----~~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp--~~~~i~~~~Li~~W 407 (784)
.. .+. +.++.+.++.... .....-++..||.+.+..+..++..- .+..+....+...+
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIE------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 11 111 2333333333221 12334566788888876666554211 33346666666643
Q ss_pred H---HhhccCh--HHHHHHHHHhhchhhhhhhh
Q 003950 408 M---ELYELVD--ELFAIANLHELSNLNLANCV 435 (784)
Q Consensus 408 ~---a~~~~~~--~~~~~~~l~~L~~~sli~~~ 435 (784)
. ....+.+ .....+++..|...|+|...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 318 KEVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2 2212221 14788899999999999763
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=1.9e-12 Score=142.64 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=55.8
Q ss_pred cccCCCCCCEEeccCCCCCCccch-hhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHHHHhhcCCCcE
Q 003950 688 TIGNLSNLNFLDISECLNIQELPE-RIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEYFQLGQAKFR 766 (784)
Q Consensus 688 ~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~lp~L~ 766 (784)
.+.++++|+.|+|++|. ++.+|. .+.++..|+.|+|+||.++.+|..+.+++.|+.|.+.+|....++.+.. +|.|+
T Consensus 378 ~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~-l~qL~ 455 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQ-LPQLK 455 (1081)
T ss_pred hhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhh-cCcce
Confidence 34556778888888774 444553 4567777888888888888777777777777777777777777776666 77775
Q ss_pred Eee
Q 003950 767 IEV 769 (784)
Q Consensus 767 i~~ 769 (784)
+..
T Consensus 456 ~lD 458 (1081)
T KOG0618|consen 456 VLD 458 (1081)
T ss_pred EEe
Confidence 433
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.19 E-value=1.5e-09 Score=111.87 Aligned_cols=180 Identities=19% Similarity=0.262 Sum_probs=115.1
Q ss_pred hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHH
Q 003950 155 KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERL 234 (784)
Q Consensus 155 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 234 (784)
..+..++.|+|++|+||||+++.+++.... . ...+.|+ +....+..+++..++..++..... .........+...
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~--~~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~ 114 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQ-E--RVVAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDF 114 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCC-C--CeEEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHH
Confidence 445678999999999999999999984221 1 1112232 333457788999999888765432 2223333444443
Q ss_pred h-c-ccCCCcEEEEEeCCCCCchHHHhhh---hccC----CCceEEEeccccc----c---------cCCCceeccCCCH
Q 003950 235 L-K-PIRPEAILLVLDDVWSGSESLLQKF---KFQL----PYYKILVTSRSVF----P---------QFGSGYDLKPLND 292 (784)
Q Consensus 235 ~-~-~l~~kr~LlVlDdv~~~~~~~~~~~---~~~~----~gs~iivTtR~~~----~---------~~~~~~~l~~L~~ 292 (784)
+ . ...+++.+||+||++......+..+ .... ....|++|..... . .....+.+++++.
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 3 1 2367889999999988764433322 2211 2234455554321 0 1122578999999
Q ss_pred HHHHHHHHHHhccCCCCCCC-cCHHHHHHHHHHcCCchhHHHHHHhhh
Q 003950 293 EAARTLFRYSANLQDGNSYI-PDENLVNKILRACKGCPLALTVVGGSL 339 (784)
Q Consensus 293 ~~a~~lf~~~a~~~~~~~~~-~~~~~~~~i~~~~~g~PLai~~~~~~L 339 (784)
+|..+++...+...+..... -.++..+.|++.++|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999988776433321112 237899999999999999999888765
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.19 E-value=9.3e-13 Score=131.55 Aligned_cols=245 Identities=14% Similarity=0.113 Sum_probs=148.2
Q ss_pred EEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecc-cCCCCc---cccccccCceee
Q 003950 524 KVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEH-VSLPSL---TTVRMKHLQNVS 599 (784)
Q Consensus 524 ~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~-n~l~~~---~~~~l~~L~~L~ 599 (784)
..+.|+-+.....-|.+|+.+++||.|++++|++---.. ..|.++.+|..|-+.+ |.|+.+ .+..+..|+.|.
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p---~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP---DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcCh---HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 345565555544444678888888888888874411111 1256666666665555 777776 444555666666
Q ss_pred eeeccccccccCccccccccCCceEEEEEeCCCCCCCCCc-ccCCCCCCcEEEccCCCCC------------CCCchhcc
Q 003950 600 LVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPD-GLCDIVSIKKLRITNCHKL------------SALPEGIG 666 (784)
Q Consensus 600 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~------------~~lp~~l~ 666 (784)
+.-|.++-+....+ ..+++|..|.+..|.+.. ++. .+..+..++.+.+..|.++ ...|..++
T Consensus 147 lNan~i~Cir~~al----~dL~~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 147 LNANHINCIRQDAL----RDLPSLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred cChhhhcchhHHHH----HHhhhcchhcccchhhhh-hccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 66665554433332 267777778877765433 333 5667777777776655421 11111111
Q ss_pred CCCCCCEEE-------------------------eecCCCCCCCc-ccccCCCCCCEEeccCCCCCCccchhhhCCCCCC
Q 003950 667 KLVNLQMLT-------------------------LASCTDLSALP-DTIGNLSNLNFLDISECLNIQELPERIGELCSLK 720 (784)
Q Consensus 667 ~l~~L~~L~-------------------------L~~~~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 720 (784)
.+....-.. .+.|.....-| ..|..+++|+.|+|++|.+...-+.+|..+..++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 111111111 11222223333 3577889999999999988877788888889999
Q ss_pred EEeccCCCCCCcCh-hhhCCCCCCEEeCCCCchhc--HHHHhhcCCCc-EEeeeccccCcc
Q 003950 721 TLCLKGCSMFELPS-SILNLENLEVVKCDEETAYQ--WEYFQLGQAKF-RIEVIQEDINLY 777 (784)
Q Consensus 721 ~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~~~--~~~~~~~lp~L-~i~~~~~~~~~~ 777 (784)
.|.|..|++..+.. .+.++..|+.|++.+|.... |-.++. +..| .+....|+++|+
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~-~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT-LFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc-cceeeeeehccCcccCc
Confidence 99999999886653 46788899999998887754 444544 4444 455666666543
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.14 E-value=1.5e-10 Score=131.80 Aligned_cols=143 Identities=21% Similarity=0.152 Sum_probs=101.7
Q ss_pred CCEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEcc
Q 003950 574 LKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRIT 653 (784)
Q Consensus 574 L~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 653 (784)
|+.|++++|.++.++. ...+|+.|++++|++..+.. ..++|+.|++++|.+. .+|.. +.+|+.|+++
T Consensus 324 L~~L~Ls~N~L~~LP~-lp~~Lq~LdLS~N~Ls~LP~--------lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs 390 (788)
T PRK15387 324 LCKLWAYNNQLTSLPT-LPSGLQELSVSDNQLASLPT--------LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVS 390 (788)
T ss_pred ccccccccCccccccc-cccccceEecCCCccCCCCC--------CCcccceehhhccccc-cCccc---ccccceEEec
Confidence 4445555555544321 22467788888877765432 2357889999998655 46763 3579999999
Q ss_pred CCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC-Cc
Q 003950 654 NCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-EL 732 (784)
Q Consensus 654 ~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~l 732 (784)
+|.+ ..+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.+ +.+|..++.+++|+.|++++|+|+ ..
T Consensus 391 ~N~L-t~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 391 GNRL-TSLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred CCcc-cCCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCCCCchH
Confidence 9874 457753 468999999998764 57754 34688999999864 579999999999999999999998 44
Q ss_pred ChhhhC
Q 003950 733 PSSILN 738 (784)
Q Consensus 733 p~~l~~ 738 (784)
|..+.+
T Consensus 462 ~~~L~~ 467 (788)
T PRK15387 462 LQALRE 467 (788)
T ss_pred HHHHHH
Confidence 444433
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.13 E-value=1.6e-08 Score=112.03 Aligned_cols=297 Identities=19% Similarity=0.205 Sum_probs=189.9
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHh-CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC-CCHHHHHHH
Q 003950 132 APDPPPVTPGLDVPLQELKLELFK-DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQK 209 (784)
Q Consensus 132 ~~~~~~~~vGr~~~~~~l~~~L~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~ 209 (784)
.|.++...|-|. ++.+.|.. .+.+.+.|.-++|.|||||+.+... +..+.-. +.|.++.++ .++..+...
T Consensus 14 ~P~~~~~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~--~~~~~~~--v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 14 RPVRPDNYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE--LAADGAA--VAWLSLDESDNDPARFLSY 85 (894)
T ss_pred CCCCcccccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH--hcCcccc--eeEeecCCccCCHHHHHHH
Confidence 334445556664 55566663 4789999999999999999999975 3333332 679999764 578889999
Q ss_pred HHHHcCCCCCCCCChHH----------HHHHHHHHhccc--CCCcEEEEEeCCCCCchH-----HHhhhhccCCCceEEE
Q 003950 210 VYQHKGYAVPEFQTDED----------AINDLERLLKPI--RPEAILLVLDDVWSGSES-----LLQKFKFQLPYYKILV 272 (784)
Q Consensus 210 i~~~l~~~~~~~~~~~~----------~~~~l~~~~~~l--~~kr~LlVlDdv~~~~~~-----~~~~~~~~~~gs~iiv 272 (784)
++.+++...++..+... ....+..++..+ -.++..+||||-.-..+. +.--+....++-.+||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 99988765544333221 111222222222 356899999997654422 2222344556889999
Q ss_pred eccccccc-C------CCceec----cCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhCC
Q 003950 273 TSRSVFPQ-F------GSGYDL----KPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCG 341 (784)
Q Consensus 273 TtR~~~~~-~------~~~~~l----~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~ 341 (784)
|||....- . +...++ =.|+.+|+.++|...... +-.+..++.+.+..+|-+-|+..++=.+++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL------PLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC------CCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 99997321 1 112333 358899999999765421 224677899999999999999998887773
Q ss_pred CC-hHHHHHHHHhhcccCcccCChHHHHH-HHHHHHHhccHHHHHHHhhcCCCCCCcccChHHHHHHHHHhhccChHHHH
Q 003950 342 KH-PAIWQKRVKEWTQDVSVFHSNKEILS-CLERSLDALNNEVKECYMDLCSFPEDQRIPITALVDMWMELYELVDELFA 419 (784)
Q Consensus 342 ~~-~~~w~~~l~~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~~~~~~~~~~ 419 (784)
.+ .+.-...+. . ....+.. ...--++.||+++|..++-||+++.=. ..|+.. +.....+
T Consensus 240 ~~~~~q~~~~Ls---G------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~------Ltg~~ng 300 (894)
T COG2909 240 NTSAEQSLRGLS---G------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNA------LTGEENG 300 (894)
T ss_pred CCcHHHHhhhcc---c------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHH------HhcCCcH
Confidence 32 322211111 0 1112222 334557899999999999999985311 223322 1122367
Q ss_pred HHHHHhhchhhhhhhhhhcccCCCCCCCCcchhhhhHHHHHHHHHhhccCC
Q 003950 420 IANLHELSNLNLANCVATRKYASDDSCYNDHFVMQHDLLRELAIYQSTLEP 470 (784)
Q Consensus 420 ~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~ 470 (784)
...+++|.+++|+-.. -.+....|+.|.++.||.+.....+.
T Consensus 301 ~amLe~L~~~gLFl~~---------Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 301 QAMLEELERRGLFLQR---------LDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred HHHHHHHHhCCCceee---------ecCCCceeehhHHHHHHHHhhhcccc
Confidence 8899999999998531 11334678999999999987766643
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.10 E-value=3.9e-10 Score=113.69 Aligned_cols=190 Identities=22% Similarity=0.306 Sum_probs=99.4
Q ss_pred CCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCCceEEEEeCCCCCHHHHHH---------
Q 003950 139 TPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIVQ--------- 208 (784)
Q Consensus 139 ~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~--------- 208 (784)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++.+.+ .... .+ . ++|+...+......+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~-~-~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFIN--ELKEKGY-K-VVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHH--HCT--EE-C-CCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCC-c-EEEEecccchhhhHHHHHHHHHHHHH
Confidence 799999999999999887788999999999999999999998 3322 22 2 33555544432221111
Q ss_pred HHHHHcCCCCCC--C-----CChHHHHHHHHHHhccc--CCCcEEEEEeCCCCCc------hHHHhh----hhc---cCC
Q 003950 209 KVYQHKGYAVPE--F-----QTDEDAINDLERLLKPI--RPEAILLVLDDVWSGS------ESLLQK----FKF---QLP 266 (784)
Q Consensus 209 ~i~~~l~~~~~~--~-----~~~~~~~~~l~~~~~~l--~~kr~LlVlDdv~~~~------~~~~~~----~~~---~~~ 266 (784)
.+.+.+....+. . .........+..+++.+ .+++++||+||+.... ..+... +.. ..+
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 111112111110 0 11112222233333222 3455999999985443 122222 122 222
Q ss_pred CceEEEeccccc-----------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 267 YYKILVTSRSVF-----------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 267 gs~iivTtR~~~-----------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
.+.|+++|.... ......+.+++|+.+++++++...+-.. ... +..++..++|...+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 344555554321 1111258999999999999998865333 111 12366779999999999998864
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.06 E-value=3.6e-09 Score=111.10 Aligned_cols=265 Identities=13% Similarity=0.082 Sum_probs=143.0
Q ss_pred CCCCCCCchhHHHHHHHHh-----CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELFK-----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVY 211 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~ 211 (784)
..|+|++..++++..++.. .....+.++|++|+|||+||+.+++ ..... ...+..+.......+ ...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~----~~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVN----LKITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCC----EEEeccchhcCchhH-HHHH
Confidence 3689999999999888872 3356788999999999999999988 33222 212222111122222 2222
Q ss_pred HHcCCCC----CCCCC-hHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhhcc-CCCceEEEecccccc------
Q 003950 212 QHKGYAV----PEFQT-DEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQ-LPYYKILVTSRSVFP------ 279 (784)
Q Consensus 212 ~~l~~~~----~~~~~-~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~-~~gs~iivTtR~~~~------ 279 (784)
..++... .+... .....+.+. ..+.+.+..+|+++..+... +... .+.+-|..||+....
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~---~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLY---PAMEDFRLDIVIGKGPSARS-----VRLDLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhh---HHHhhhheeeeeccCccccc-----eeecCCCeEEEEecCCccccCHHHHh
Confidence 2222111 00000 011112222 22234445555555433221 1111 124455566665411
Q ss_pred cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCCChHHHHHHHHhhcccCc
Q 003950 280 QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVKEWTQDVS 359 (784)
Q Consensus 280 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~~~~~w~~~l~~~~~~~~ 359 (784)
..+..+.+++++.++..+++.+.+...+. .-.++....|++.|+|.|-.+..++..+ |... .. .....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a-~~-~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFA-QV-RGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHH-HH-cCCCC
Confidence 12346899999999999999988754332 2236788999999999997665444322 2110 00 00000
Q ss_pred cc-CChHHHHHHHHHHHHhccHHHHHHHh-hcCCCCCCcccChHHHHHHHHHhhccChHHHHHHHHH-hhchhhhhhh
Q 003950 360 VF-HSNKEILSCLERSLDALNNEVKECYM-DLCSFPEDQRIPITALVDMWMELYELVDELFAIANLH-ELSNLNLANC 434 (784)
Q Consensus 360 ~~-~~~~~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~~l~-~L~~~sli~~ 434 (784)
+. ..-......+...|..|+.+.+..+. .++.++.+ .+..+.+... -..+.. .++..++ .|++.+||..
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~----lg~~~~-~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAA----LGEDAD-TIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHH----hCCCcc-hHHHhhhHHHHHcCCccc
Confidence 00 00012222345567778887777665 55666543 4554444322 123333 7788888 6999999963
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.02 E-value=2.7e-11 Score=121.29 Aligned_cols=223 Identities=16% Similarity=0.160 Sum_probs=157.9
Q ss_pred CCCceEEEEEecCCCCcccChhccCCCCCcEEEeec-c--cccCCcCcCccccCCCCCCCEEEecccCCCCc---ccccc
Q 003950 519 EAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTN-Y--GFFPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRM 592 (784)
Q Consensus 519 ~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~-~--~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~l 592 (784)
..++++.++|+-++....-|.+|.++.+|..|-+.+ | ..+|... |++|..|+.|.+.-|.+..+ .+..+
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~-----F~gL~slqrLllNan~i~Cir~~al~dL 163 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA-----FGGLSSLQRLLLNANHINCIRQDALRDL 163 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH-----hhhHHHHHHHhcChhhhcchhHHHHHHh
Confidence 456788888888887778899999999998887777 4 2356554 89999999999999988877 55677
Q ss_pred ccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCC------------CCCCcccCCCCCCc------------
Q 003950 593 KHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDL------------IELPDGLCDIVSIK------------ 648 (784)
Q Consensus 593 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~------------~~lp~~i~~l~~L~------------ 648 (784)
++|..|.+..|.+..+...... .+.+++.+.+..|.+. ...|..+++.....
T Consensus 164 ~~l~lLslyDn~~q~i~~~tf~----~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~ 239 (498)
T KOG4237|consen 164 PSLSLLSLYDNKIQSICKGTFQ----GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQE 239 (498)
T ss_pred hhcchhcccchhhhhhcccccc----chhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhccc
Confidence 8888888888877766554432 5667777777666421 11222233221111
Q ss_pred -------E---E---EccCCCCCCCCc-hhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhh
Q 003950 649 -------K---L---RITNCHKLSALP-EGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIG 714 (784)
Q Consensus 649 -------~---L---~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~ 714 (784)
+ + -.+.|......| ..|.+|++|++|+|++|.+...-+..|.++..++.|.|..|.+...-...|.
T Consensus 240 ~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~ 319 (498)
T KOG4237|consen 240 DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ 319 (498)
T ss_pred chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhh
Confidence 1 1 112233334444 3577899999999999888877788889999999999999865554455678
Q ss_pred CCCCCCEEeccCCCCCCc-ChhhhCCCCCCEEeCCCC
Q 003950 715 ELCSLKTLCLKGCSMFEL-PSSILNLENLEVVKCDEE 750 (784)
Q Consensus 715 ~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~ 750 (784)
.+..|++|+|.+|.|+.+ |..+..+.+|..|++-.|
T Consensus 320 ~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 320 GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred ccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 889999999999998844 566777888888866443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.3e-11 Score=121.55 Aligned_cols=205 Identities=18% Similarity=0.236 Sum_probs=113.6
Q ss_pred CCceEEEEEecCCCCccc-ChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc----ccccccc
Q 003950 520 APEVKVVVLNVRTKKYTL-PKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL----TTVRMKH 594 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~ 594 (784)
..+++.+.|+-+.....- -.....|++++.|+++.|=+. .-..-++....|++|+.|+|+.|.+... ....+++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 445666666655321110 034556777777777774210 0001112245677777777777766443 3345677
Q ss_pred CceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCc--hhccCCCCCC
Q 003950 595 LQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALP--EGIGKLVNLQ 672 (784)
Q Consensus 595 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~ 672 (784)
|+.|.++.|.++.-. ...+...+|+|+.|+|.+|.....-.....-+..|+.|||++|.++. .+ ..++.++.|.
T Consensus 199 lK~L~l~~CGls~k~---V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKD---VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLN 274 (505)
T ss_pred hheEEeccCCCCHHH---HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchh
Confidence 777777777665221 11122257777777777774332222223345667777777765443 23 3466777777
Q ss_pred EEEeecCCCCC-CCccc-----ccCCCCCCEEeccCCCCCC--ccchhhhCCCCCCEEeccCCCCC
Q 003950 673 MLTLASCTDLS-ALPDT-----IGNLSNLNFLDISECLNIQ--ELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 673 ~L~L~~~~~~~-~~p~~-----~~~l~~L~~L~l~~n~~~~--~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
.|+++.|.+.+ ..|+. ...+++|++|++..|+... .+ ..+..+++|+.|.+..|.++
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl-~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL-NHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc-chhhccchhhhhhccccccc
Confidence 77777665543 22322 3456677777777775421 11 23455666677776666665
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.99 E-value=1.5e-08 Score=106.94 Aligned_cols=268 Identities=15% Similarity=0.108 Sum_probs=142.0
Q ss_pred CCCCCCCCCCchhHHHHHHHHh-----CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHH
Q 003950 134 DPPPVTPGLDVPLQELKLELFK-----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQ 208 (784)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 208 (784)
..-..|+|++..++.+..++.. .....+.|+|++|+||||||+.+++ ..... +..+..+. ......+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~--~l~~~----~~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN--EMGVN----IRITSGPA-LEKPGDLA 94 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH--HhCCC----eEEEeccc-ccChHHHH
Confidence 3446789999999999887762 2356789999999999999999998 33221 22222211 11111222
Q ss_pred HHHHHcCCCCC----CCCC-hHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhhccCC-CceEEEecccccc---
Q 003950 209 KVYQHKGYAVP----EFQT-DEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQLP-YYKILVTSRSVFP--- 279 (784)
Q Consensus 209 ~i~~~l~~~~~----~~~~-~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~-gs~iivTtR~~~~--- 279 (784)
.++..+..... +... .....+.+... +.+.+..+|+|+..+... .....+ .+-|..|++....
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~---~e~~~~~~~l~~~~~~~~-----~~~~l~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPA---MEDFRLDIMIGKGPAARS-----IRLDLPPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHH---HHhcceeeeeccCccccc-----eeecCCCceEEeecCCcccCCHH
Confidence 22222211000 0000 00011111111 122333333333222110 001112 3445556664411
Q ss_pred ---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCCChHHHHHHHHhhcc
Q 003950 280 ---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVKEWTQ 356 (784)
Q Consensus 280 ---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~~~~~w~~~l~~~~~ 356 (784)
..+..+.+++++.++..+++.+.+...+. .-.++.+..|++.|+|.|-.+..+...+ ..|. ... .
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a-~~~---~ 234 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFA-QVK---G 234 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHH-HHc---C
Confidence 13447899999999999999988755432 2246789999999999996554444322 1121 011 0
Q ss_pred cCccc-CChHHHHHHHHHHHHhccHHHHHHHh-hcCCCCCCcccChHHHHHHHHHhhccChHHHHHHHHH-hhchhhhhh
Q 003950 357 DVSVF-HSNKEILSCLERSLDALNNEVKECYM-DLCSFPEDQRIPITALVDMWMELYELVDELFAIANLH-ELSNLNLAN 433 (784)
Q Consensus 357 ~~~~~-~~~~~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~~l~-~L~~~sli~ 433 (784)
...+. ..-......+...+..|++..+..+. .+..|+.+ .+..+.+.... ..+.+ .+++.++ .|++.+||+
T Consensus 235 ~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l----g~~~~-~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 235 DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL----GEERD-TIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH----CCCcc-hHHHHhhHHHHHcCCcc
Confidence 00010 00112334445566778877777775 66667655 45655553322 22222 6777777 899999996
Q ss_pred h
Q 003950 434 C 434 (784)
Q Consensus 434 ~ 434 (784)
.
T Consensus 309 ~ 309 (328)
T PRK00080 309 R 309 (328)
T ss_pred c
Confidence 3
No 34
>PF05729 NACHT: NACHT domain
Probab=98.94 E-value=5e-09 Score=99.27 Aligned_cols=136 Identities=24% Similarity=0.344 Sum_probs=84.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccc----cCCceEEEEeCCCCCHH---HHHHHHHHHcCCCCCCCCChHHHHHHH
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGK----FKDNIFFVTVSQTPNVK---GIVQKVYQHKGYAVPEFQTDEDAINDL 231 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l 231 (784)
+++.|+|.+|+||||+++.++.+..-... +.. ++|+..++..... .+...|..+...... .....+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPY-PFFFSLRDISDSNNSRSLADLLFDQLPESIA------PIEELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceE-EEEEeehhhhhccccchHHHHHHHhhccchh------hhHHHH
Confidence 58999999999999999999874322222 223 5577665544322 344444444322111 111122
Q ss_pred HHHhcccCCCcEEEEEeCCCCCch-----------HHHhhhhcc--CCCceEEEecccccc-------cCCCceeccCCC
Q 003950 232 ERLLKPIRPEAILLVLDDVWSGSE-----------SLLQKFKFQ--LPYYKILVTSRSVFP-------QFGSGYDLKPLN 291 (784)
Q Consensus 232 ~~~~~~l~~kr~LlVlDdv~~~~~-----------~~~~~~~~~--~~gs~iivTtR~~~~-------~~~~~~~l~~L~ 291 (784)
...++ +.++++||+|++++..+ .++..+... .+++++|||+|.... .....+.+.+|+
T Consensus 74 ~~~~~--~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 74 QELLE--KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHH--cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 22222 68899999999865432 123333333 578999999998632 222478999999
Q ss_pred HHHHHHHHHHHh
Q 003950 292 DEAARTLFRYSA 303 (784)
Q Consensus 292 ~~~a~~lf~~~a 303 (784)
+++..+++.+..
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 35
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.91 E-value=8.5e-09 Score=105.57 Aligned_cols=290 Identities=19% Similarity=0.189 Sum_probs=196.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 236 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 236 (784)
..+.+.++|.|||||||++-.+.. ++..|+.++..+......+...+.-.+...++..... .+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~--- 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVR--- 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHH---
Confidence 357899999999999999998885 6778988787777777777777777777777765432 1222222333
Q ss_pred ccCCCcEEEEEeCCCCCch---HHHhhhhccCCCceEEEecccccccCCC-ceeccCCCHH-HHHHHHHHHhccCCCC--
Q 003950 237 PIRPEAILLVLDDVWSGSE---SLLQKFKFQLPYYKILVTSRSVFPQFGS-GYDLKPLNDE-AARTLFRYSANLQDGN-- 309 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~~~---~~~~~~~~~~~gs~iivTtR~~~~~~~~-~~~l~~L~~~-~a~~lf~~~a~~~~~~-- 309 (784)
++.++|.++|+||.-...+ .....+..+.+.-.|+.|+|......+. .+.+++|+.. ++.++|...+.....+
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 3378999999999743322 2455566677778899999998544444 6778888776 7889988766443322
Q ss_pred CCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCCChHHHHHHH----Hhhccc-CcccCChHHHHHHHHHHHHhccHHHHH
Q 003950 310 SYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRV----KEWTQD-VSVFHSNKEILSCLERSLDALNNEVKE 384 (784)
Q Consensus 310 ~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~~~~~w~~~l----~~~~~~-~~~~~~~~~i~~~l~~sy~~L~~~~k~ 384 (784)
-.......+.+|.++..|.|++|...++..+.-...+-...+ ..+... ...........+.+..||.-|..-.+.
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~ 243 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERA 243 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHH
Confidence 122347788999999999999999999988766543322222 222221 111112345678999999999999999
Q ss_pred HHhhcCCCCCCcccChHHHHHHHHHhhccC--hHHHHHHHHHhhchhhhhhhhhhcccCCCCCCCCcchhhhhHHHHHHH
Q 003950 385 CYMDLCSFPEDQRIPITALVDMWMELYELV--DELFAIANLHELSNLNLANCVATRKYASDDSCYNDHFVMQHDLLRELA 462 (784)
Q Consensus 385 cfl~~a~fp~~~~i~~~~Li~~W~a~~~~~--~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a 462 (784)
-|.-++.|...+... ...|.+-|... +.-.....+..+++.+++.... ..+...|+.-+-++.|+
T Consensus 244 ~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~---------~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 244 LFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALD---------LLGRARYRLLETGRRYA 310 (414)
T ss_pred Hhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhh---------hhhHHHHHHHHHHHHHH
Confidence 999999998777544 34455444322 2235666777889999886532 23445677777777777
Q ss_pred HHhhcc
Q 003950 463 IYQSTL 468 (784)
Q Consensus 463 ~~~~~~ 468 (784)
..+-.+
T Consensus 311 laeL~r 316 (414)
T COG3903 311 LAELHR 316 (414)
T ss_pred HHHHHh
Confidence 655433
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.88 E-value=4.6e-09 Score=120.05 Aligned_cols=107 Identities=13% Similarity=0.288 Sum_probs=97.1
Q ss_pred ceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEecc
Q 003950 622 NLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDIS 701 (784)
Q Consensus 622 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 701 (784)
.+..|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred CCCCCCccchhhhCC-CCCCEEeccCCC
Q 003950 702 ECLNIQELPERIGEL-CSLKTLCLKGCS 728 (784)
Q Consensus 702 ~n~~~~~~p~~l~~l-~~L~~L~l~~n~ 728 (784)
+|.+.+.+|..++.+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 999999999888764 577888998887
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.86 E-value=1.5e-07 Score=110.36 Aligned_cols=309 Identities=17% Similarity=0.228 Sum_probs=176.6
Q ss_pred CCCCCchhHHHHHHHH---hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceE---EEEeCCCCC---HHHHHHH
Q 003950 139 TPGLDVPLQELKLELF---KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIF---FVTVSQTPN---VKGIVQK 209 (784)
Q Consensus 139 ~vGr~~~~~~l~~~L~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~---wv~~~~~~~---~~~~~~~ 209 (784)
++||+.+++.|...+. .....++.+.|.+|||||+|+++|.. .+.+.+.. .+ +-....... ..+.+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~-~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGY-FIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhcccee-eeHhhcccccCCCchHHHHHHHHH
Confidence 6999999999999887 45578999999999999999999987 44444211 10 111111111 1222333
Q ss_pred HHHHc-------------------CCCCC------------------CC--CCh--HHHHH-HHHHHh--cccCCCcEEE
Q 003950 210 VYQHK-------------------GYAVP------------------EF--QTD--EDAIN-DLERLL--KPIRPEAILL 245 (784)
Q Consensus 210 i~~~l-------------------~~~~~------------------~~--~~~--~~~~~-~l~~~~--~~l~~kr~Ll 245 (784)
++.++ +.... .. ... ..... .+...+ -.-+.|+.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33322 11110 00 000 00111 111112 1225679999
Q ss_pred EEeCCCCCc-hH--HHhhhhccCC-----CceEEE--ecccc------cccCCCceeccCCCHHHHHHHHHHHhccCCCC
Q 003950 246 VLDDVWSGS-ES--LLQKFKFQLP-----YYKILV--TSRSV------FPQFGSGYDLKPLNDEAARTLFRYSANLQDGN 309 (784)
Q Consensus 246 VlDdv~~~~-~~--~~~~~~~~~~-----gs~iiv--TtR~~------~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~ 309 (784)
|+||+.-.+ .+ +++.+....+ ...|.. |.+.. .......+.|.||+..+...+.........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 999994433 32 3444433332 122333 23322 112234799999999999999887663322
Q ss_pred CCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCC-------ChHHHHHHHHhhcccCcccCChHHHHHHHHHHHHhccHHH
Q 003950 310 SYIPDENLVNKILRACKGCPLALTVVGGSLCGK-------HPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDALNNEV 382 (784)
Q Consensus 310 ~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~-------~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 382 (784)
....+....|.++..|+|+.+..+-..+... +...|...+..... ....+.+...+..-.+.||...
T Consensus 237 --~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~~~vv~~l~~rl~kL~~~t 310 (849)
T COG3899 237 --LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATTDAVVEFLAARLQKLPGTT 310 (849)
T ss_pred --cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhhHHHHHHHHHHHhcCCHHH
Confidence 2346789999999999999999888887643 23344433222211 1223346667889999999999
Q ss_pred HHHHhhcCCCCCCcccChHHHHHHHHHhhccChHHHHHHHHHhhchhhhhhhhhhcccCCCCCCCCcc-hhhhhHHHHHH
Q 003950 383 KECYMDLCSFPEDQRIPITALVDMWMELYELVDELFAIANLHELSNLNLANCVATRKYASDDSCYNDH-FVMQHDLLREL 461 (784)
Q Consensus 383 k~cfl~~a~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~-~~~mHdlv~~~ 461 (784)
|+.+-..||+- -.|+...|...|-. ... .++...++.|....++-..+....... .... +-..|+++++.
T Consensus 311 ~~Vl~~AA~iG--~~F~l~~La~l~~~---~~~-~~a~~l~~al~e~lI~~~~~~yr~~~~---~~~~~Y~F~H~~vqqa 381 (849)
T COG3899 311 REVLKAAACIG--NRFDLDTLAALAED---SPA-LEAAALLDALQEGLILPLSETYRFGSN---VDIATYKFLHDRVQQA 381 (849)
T ss_pred HHHHHHHHHhC--ccCCHHHHHHHHhh---chH-HHHHHHHHHhHhhceeccccccccccc---cchhhHHhhHHHHHHH
Confidence 99999999974 55666666655532 111 255555666655544432111111100 1111 22569999998
Q ss_pred HHHhhc
Q 003950 462 AIYQST 467 (784)
Q Consensus 462 a~~~~~ 467 (784)
|-....
T Consensus 382 aY~~i~ 387 (849)
T COG3899 382 AYNLIP 387 (849)
T ss_pred HhccCc
Confidence 865433
No 38
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.85 E-value=2.3e-07 Score=103.64 Aligned_cols=203 Identities=15% Similarity=0.139 Sum_probs=120.8
Q ss_pred CCCCCCCCCchhHHHHHHHH----hCC-cEEEEEEcCCCCcHHHHHHHHhccccc---ccccC-CceEEEEeCCCCCHHH
Q 003950 135 PPPVTPGLDVPLQELKLELF----KDG-RQVIVVSAPGGYGKTTLVKKLCKDDQV---LGKFK-DNIFFVTVSQTPNVKG 205 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~----~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~f~-~~~~wv~~~~~~~~~~ 205 (784)
.|+.++||++|+++|...|. ..+ ..++.|+|++|+|||++++.|.+..+- ....+ ..+++|++....+...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45778999999999999887 223 357789999999999999999873211 11222 3456888877778899
Q ss_pred HHHHHHHHcCCCCCCCCChHHHHHHHHHHhccc---CCCcEEEEEeCCCCCc---hH-HHhhhhc-cCCCceEEE--ecc
Q 003950 206 IVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI---RPEAILLVLDDVWSGS---ES-LLQKFKF-QLPYYKILV--TSR 275 (784)
Q Consensus 206 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l---~~kr~LlVlDdv~~~~---~~-~~~~~~~-~~~gs~iiv--TtR 275 (784)
++..|.+++....+. ......+.+..++..+ .+...+||||+|+... +. +..-+.+ ...+++|+| +|.
T Consensus 833 IYqvI~qqL~g~~P~--~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPP--NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHcCCCCC--ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecC
Confidence 999999988544332 1222233444555333 2334689999996543 22 3333332 234566554 232
Q ss_pred cc-----------cccCCCceeccCCCHHHHHHHHHHHhccCCCCCCC-cCHHHHHHHHHHcCCchhHHHHHHhhh
Q 003950 276 SV-----------FPQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYI-PDENLVNKILRACKGCPLALTVVGGSL 339 (784)
Q Consensus 276 ~~-----------~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~-~~~~~~~~i~~~~~g~PLai~~~~~~L 339 (784)
+. .......+..+|++.++-.+++..++.......++ .++-+|+.++...|-.-.||.++-...
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 21 01111246779999999999999887542211111 123333434434444556666554443
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.8e-10 Score=114.81 Aligned_cols=206 Identities=17% Similarity=0.195 Sum_probs=142.1
Q ss_pred cCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-----cccccccCceeeeeeccccccccCccccc
Q 003950 542 EKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-----TTVRMKHLQNVSLVMCNVDQVVQNSTFHF 616 (784)
Q Consensus 542 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 616 (784)
+++++|+...+.++..-..... .....|++++.|+|+.|-+... ....+++|+.|+++.|.+..........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~- 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL- 194 (505)
T ss_pred hhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh-
Confidence 5788899999988643211111 2356789999999999987765 4567899999999998877665544332
Q ss_pred cccCCceEEEEEeCCCCCCC-CCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCC-cccccCCCC
Q 003950 617 SDAFPNLLEIDIDYCNDLIE-LPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSAL-PDTIGNLSN 694 (784)
Q Consensus 617 ~~~l~~L~~L~L~~~~~~~~-lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~ 694 (784)
.+++|+.|.|+.|.++.. +-.....+++|+.|+|..|.....--....-++.|+.|+|++|++...- -...+.++.
T Consensus 195 --~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 195 --LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred --hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 578899999999977632 2333456788999999887533322223345778999999987765432 145778888
Q ss_pred CCEEeccCCCCCC-ccchh-----hhCCCCCCEEeccCCCCCCcC--hhhhCCCCCCEEeCCCCch
Q 003950 695 LNFLDISECLNIQ-ELPER-----IGELCSLKTLCLKGCSMFELP--SSILNLENLEVVKCDEETA 752 (784)
Q Consensus 695 L~~L~l~~n~~~~-~~p~~-----l~~l~~L~~L~l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~ 752 (784)
|+.|+++.|.... ..|+. ...+++|++|++..|++...+ ..+..+++|+.|.|..+..
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 9999888875543 23332 245788999999999887665 2455677777777665543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=1e-09 Score=105.94 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=54.9
Q ss_pred CceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEec
Q 003950 621 PNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDI 700 (784)
Q Consensus 621 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 700 (784)
..|+.|||++| .+.++..++.-++.++.|++|+|.+. .+. .+..|++|+.|+|++|.+ ..+...-..+-+.+.|.|
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchh-HhhhhhHhhhcCEeeeeh
Confidence 34455555554 22333444444455555555554322 121 244455555555554332 222222233444455555
Q ss_pred cCCCCCCccchhhhCCCCCCEEeccCCCCCCcC--hhhhCCCCCCEEeCCCCch
Q 003950 701 SECLNIQELPERIGELCSLKTLCLKGCSMFELP--SSILNLENLEVVKCDEETA 752 (784)
Q Consensus 701 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~ 752 (784)
++| .+..+. +++++-+|..|++++|+|..+. ..+++||.|+.+.+.+|..
T Consensus 360 a~N-~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQN-KIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhh-hHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 554 222222 3444555555555555544322 2345555555554444433
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.79 E-value=1e-09 Score=108.78 Aligned_cols=229 Identities=15% Similarity=0.178 Sum_probs=151.1
Q ss_pred cChhccCCCCCcEEEeecc--cc----cCCcCcCc-cccCCCCCCCEEEecccCCCCc-------cccccccCceeeeee
Q 003950 537 LPKFLEKMDKLKVMIVTNY--GF----FPAELSNI-QVFGALSNLKRIRLEHVSLPSL-------TTVRMKHLQNVSLVM 602 (784)
Q Consensus 537 ~p~~l~~l~~L~~L~l~~~--~~----~~~~~~~l-~~l~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~~L~l~~ 602 (784)
+-+.+.+.++|+..++++. |. +|..+..| +.+..++.|++++||+|.+..- ....+..|+.|.+.+
T Consensus 50 i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N 129 (382)
T KOG1909|consen 50 IAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNN 129 (382)
T ss_pred HHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhc
Confidence 4456667777777777762 21 23322221 2345666888888888876543 233567788888888
Q ss_pred ccccccccCcc---------ccccccCCceEEEEEeCCCCCCC----CCcccCCCCCCcEEEccCCCCCCC----Cchhc
Q 003950 603 CNVDQVVQNST---------FHFSDAFPNLLEIDIDYCNDLIE----LPDGLCDIVSIKKLRITNCHKLSA----LPEGI 665 (784)
Q Consensus 603 ~~~~~~~~~~~---------~~~~~~l~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~L~~~~~~~~----lp~~l 665 (784)
|.+...-.... ..-...-++|+++....|..-.. +...+...+.|+.+.++.|.+... +-..+
T Consensus 130 ~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal 209 (382)
T KOG1909|consen 130 CGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEAL 209 (382)
T ss_pred CCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHH
Confidence 87765433321 11112457899999988854321 233456678899999988764322 23456
Q ss_pred cCCCCCCEEEeecCCCCCC----CcccccCCCCCCEEeccCCCCCCccchhh-----hCCCCCCEEeccCCCCC-----C
Q 003950 666 GKLVNLQMLTLASCTDLSA----LPDTIGNLSNLNFLDISECLNIQELPERI-----GELCSLKTLCLKGCSMF-----E 731 (784)
Q Consensus 666 ~~l~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~p~~l-----~~l~~L~~L~l~~n~l~-----~ 731 (784)
..+++|+.|+|..|.+... +...+..+++|+.|+++.|.+...-...+ ...++|+.|.+.+|.++ .
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~ 289 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA 289 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence 7899999999999887653 34556778899999999996654332222 34789999999999987 3
Q ss_pred cChhhhCCCCCCEEeCCCCch----hcHHHHhhcCCCc
Q 003950 732 LPSSILNLENLEVVKCDEETA----YQWEYFQLGQAKF 765 (784)
Q Consensus 732 lp~~l~~l~~L~~L~l~~~~~----~~~~~~~~~lp~L 765 (784)
+-..+...+.|..|++++|+. .....+...++..
T Consensus 290 la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~~~ 327 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFDTA 327 (382)
T ss_pred HHHHHhcchhhHHhcCCcccccccchhHHHHHHhcccc
Confidence 344567789999999999988 4455555545433
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=3.5e-10 Score=118.53 Aligned_cols=163 Identities=20% Similarity=0.284 Sum_probs=102.2
Q ss_pred CCCCCCCEEEecccCCCCc--cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCC
Q 003950 569 GALSNLKRIRLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVS 646 (784)
Q Consensus 569 ~~l~~L~~L~L~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 646 (784)
+.+..|..+.|+.|.+-.+ ....+..|+.|+++.|++..+.... ..--|++|-+++|+ ++.+|..++.+.+
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l------C~lpLkvli~sNNk-l~~lp~~ig~~~t 167 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL------CDLPLKVLIVSNNK-LTSLPEEIGLLPT 167 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh------hcCcceeEEEecCc-cccCCcccccchh
Confidence 3344555566666665554 4445666677777777665543322 23456777777653 4556666777777
Q ss_pred CcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccC
Q 003950 647 IKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKG 726 (784)
Q Consensus 647 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 726 (784)
|..||.+.|. +..+|..++.+.+|+.|+++.|.. ..+|+.+..|+ |..||+++| .+..+|-.|.+|+.|++|-|.+
T Consensus 168 l~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l-~~lp~El~~Lp-Li~lDfScN-kis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 168 LAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHL-EDLPEELCSLP-LIRLDFSCN-KISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhh-hhCCHHHhCCc-eeeeecccC-ceeecchhhhhhhhheeeeecc
Confidence 7777777665 555666677777777777777443 45566666543 777777765 4566777777777777777777
Q ss_pred CCCCCcChhhhCCCCC
Q 003950 727 CSMFELPSSILNLENL 742 (784)
Q Consensus 727 n~l~~lp~~l~~l~~L 742 (784)
|++..-|..++-...+
T Consensus 244 NPLqSPPAqIC~kGkV 259 (722)
T KOG0532|consen 244 NPLQSPPAQICEKGKV 259 (722)
T ss_pred CCCCCChHHHHhccce
Confidence 7777666555443333
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.75 E-value=2e-08 Score=114.85 Aligned_cols=106 Identities=25% Similarity=0.382 Sum_probs=96.9
Q ss_pred CCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEecc
Q 003950 646 SIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLK 725 (784)
Q Consensus 646 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 725 (784)
.++.|+|++|.+.+.+|..++++++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CcChhhhCC-CCCCEEeCCCCc
Q 003950 726 GCSMF-ELPSSILNL-ENLEVVKCDEET 751 (784)
Q Consensus 726 ~n~l~-~lp~~l~~l-~~L~~L~l~~~~ 751 (784)
+|.++ .+|..+..+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99988 889888664 466778777764
No 44
>PTZ00202 tuzin; Provisional
Probab=98.75 E-value=4.3e-07 Score=94.20 Aligned_cols=164 Identities=14% Similarity=0.086 Sum_probs=107.2
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHhC---CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 128 GACSAPDPPPVTPGLDVPLQELKLELFKD---GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 128 ~~~~~~~~~~~~vGr~~~~~~l~~~L~~~---~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
...+.|.++..|+||+.++.++...|.+. ..+++.|.|++|+|||||++.+... .. +. ++.++.. +..
T Consensus 253 ~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~~--qL~vNpr---g~e 323 (550)
T PTZ00202 253 TLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--MP--AVFVDVR---GTE 323 (550)
T ss_pred cccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--ce--EEEECCC---CHH
Confidence 34567788889999999999999998732 2569999999999999999999862 22 22 3333333 679
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc---ccCCCcEEEEEe--CCCCCchH--HHhhhhccCCCceEEEecccc
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLK---PIRPEAILLVLD--DVWSGSES--LLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~---~l~~kr~LlVlD--dv~~~~~~--~~~~~~~~~~gs~iivTtR~~ 277 (784)
++++.++.+++.+.. ....+....+++.+. .-++++.+||+- +-.+...- -.-.+.+...-|.|++---.+
T Consensus 324 ElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evple 401 (550)
T PTZ00202 324 DTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHh
Confidence 999999999997322 233455566666552 123777777764 11111100 122344444557777655444
Q ss_pred c-------ccCCCceeccCCCHHHHHHHHHHH
Q 003950 278 F-------PQFGSGYDLKPLNDEAARTLFRYS 302 (784)
Q Consensus 278 ~-------~~~~~~~~l~~L~~~~a~~lf~~~ 302 (784)
. ..--..|.++.++.++|.+.-.+.
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 2 112236899999999998876554
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.74 E-value=1.1e-08 Score=95.54 Aligned_cols=123 Identities=23% Similarity=0.279 Sum_probs=44.8
Q ss_pred CceEEEEEeCCCCCCCCCcccC-CCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccc-cCCCCCCEE
Q 003950 621 PNLLEIDIDYCNDLIELPDGLC-DIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTI-GNLSNLNFL 698 (784)
Q Consensus 621 ~~L~~L~L~~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~-~~l~~L~~L 698 (784)
.+++.|+|.+|.+.. + +.++ .+.+|+.|++++|. +..++ .+..+++|++|++++|.+. .++..+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccc-c-cchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 356666666664433 2 2244 46677777777765 33443 4667778888888776554 343333 357788888
Q ss_pred eccCCCCCCc-cchhhhCCCCCCEEeccCCCCCCcC----hhhhCCCCCCEEeCC
Q 003950 699 DISECLNIQE-LPERIGELCSLKTLCLKGCSMFELP----SSILNLENLEVVKCD 748 (784)
Q Consensus 699 ~l~~n~~~~~-~p~~l~~l~~L~~L~l~~n~l~~lp----~~l~~l~~L~~L~l~ 748 (784)
++++|.+... --..+..+++|+.|++.+|+++.-+ ..+..+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 8887754331 1134667888888888888877544 245778888888743
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.72 E-value=1.2e-07 Score=103.17 Aligned_cols=174 Identities=15% Similarity=0.154 Sum_probs=106.0
Q ss_pred CCCCCCCCCchhHH---HHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 003950 135 PPPVTPGLDVPLQE---LKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVY 211 (784)
Q Consensus 135 ~~~~~vGr~~~~~~---l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~ 211 (784)
.-..+||.+..+.. +..++.......+.++|++|+||||+|+.+++ ..... |+.++.......-++.++
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~--~~~~~------~~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAG--ATDAP------FEALSAVTSGVKDLREVI 81 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHH--HhCCC------EEEEecccccHHHHHHHH
Confidence 34568999887666 77777777777889999999999999999987 33222 333322211111122222
Q ss_pred HHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhhcc-CCCceEEE--eccccc-------ccC
Q 003950 212 QHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQ-LPYYKILV--TSRSVF-------PQF 281 (784)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~-~~gs~iiv--TtR~~~-------~~~ 281 (784)
+.. ... ...+++.+|++|+++.........+... ..|..++| ||.+.. ...
T Consensus 82 ~~~-----------------~~~--~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 82 EEA-----------------RQR--RSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred HHH-----------------HHh--hhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhcc
Confidence 211 110 0146788999999987654433333222 23555444 344331 112
Q ss_pred CCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 282 GSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 282 ~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
...+.+.+++.++..+++.+.+.........-.++..+.|++.|+|.|..+..+
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 247899999999999999876533211010223677889999999999766543
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.70 E-value=1.5e-09 Score=107.61 Aligned_cols=192 Identities=16% Similarity=0.176 Sum_probs=142.0
Q ss_pred hhccCCCCCcEEEeecccccCCcCcCcc-ccCCCCCCCEEEecccCCCCc----------------cccccccCceeeee
Q 003950 539 KFLEKMDKLKVMIVTNYGFFPAELSNIQ-VFGALSNLKRIRLEHVSLPSL----------------TTVRMKHLQNVSLV 601 (784)
Q Consensus 539 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~l~~L~~L~L~~n~l~~~----------------~~~~l~~L~~L~l~ 601 (784)
+.+-.+++|++|+||+|.+-|..+..|. .+.++.+|+.|.|.+|.+... ....-+.|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 4566788999999999988887775543 356788999999999987543 12245678888888
Q ss_pred eccccccccCccccccccCCceEEEEEeCCCCCCC----CCcccCCCCCCcEEEccCCCCCCC----CchhccCCCCCCE
Q 003950 602 MCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIE----LPDGLCDIVSIKKLRITNCHKLSA----LPEGIGKLVNLQM 673 (784)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~ 673 (784)
.|.+...........+...+.|+.+.++.|.+..+ +...+..+++|+.|||..|+++.. +...++.+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 88776554443334445668999999999865432 334567899999999999987654 3456678899999
Q ss_pred EEeecCCCCCCCcccc-----cCCCCCCEEeccCCCCCCc----cchhhhCCCCCCEEeccCCCCC
Q 003950 674 LTLASCTDLSALPDTI-----GNLSNLNFLDISECLNIQE----LPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 674 L~L~~~~~~~~~p~~~-----~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
|++++|.....-...+ ...++|+.|.+.+|.++.. +...+...+.|..|+|++|.+.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9999998765433222 3468999999999976542 3344567899999999999993
No 48
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.67 E-value=6.1e-07 Score=95.83 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=110.8
Q ss_pred CCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCCceEEEEeCCCCCH-HHHHH---HH
Q 003950 136 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNV-KGIVQ---KV 210 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~~wv~~~~~~~~-~~~~~---~i 210 (784)
-..++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+ .+.. .+....+.+++++..+. ...+. ..
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~--~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR--ELYGDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH--HhcCcccccceEEechhhhhhcchhhhhcCcch
Confidence 356799999999999988877666788999999999999999987 3322 22333445554331100 00000 00
Q ss_pred HHHcCCCCCCCCChHHHHHHH-HHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc-----
Q 003950 211 YQHKGYAVPEFQTDEDAINDL-ERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF----- 278 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l-~~~~~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~----- 278 (784)
...++..........+....+ +.... ...+.+-+||+||+...... +...+....+.+++|+||....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchh
Confidence 000000000000011111111 11111 11244568999999765432 2333333345577888875431
Q ss_pred -ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 279 -PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 279 -~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
......+.+.+++.++..+++.+.+...+.. -..+..+.+++.++|.+-.+..
T Consensus 172 L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 172 IRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1223478889999999999888876443321 2367889999999998755543
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.67 E-value=1.9e-07 Score=95.18 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=102.9
Q ss_pred CCCCCCCch---hHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHH
Q 003950 137 PVTPGLDVP---LQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 137 ~~~vGr~~~---~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
.++||-+.- -.-|..++..+.+.-.-+||++|+||||||+.+.. .....| ..++-..+-..-++.+++.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f------~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF------EALSAVTSGVKDLREIIEE 95 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHH--hhCCce------EEeccccccHHHHHHHHHH
Confidence 344554432 23445556677788889999999999999999987 433333 3333333222222333222
Q ss_pred cCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhhc-cCCCceEEE--eccccc-------ccCCC
Q 003950 214 KGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKF-QLPYYKILV--TSRSVF-------PQFGS 283 (784)
Q Consensus 214 l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~-~~~gs~iiv--TtR~~~-------~~~~~ 283 (784)
- ++ ....+++.+|++|.|+.-+...-+.|.+ ...|.-|+| ||-++. ..-..
T Consensus 96 a-----------------~~--~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 96 A-----------------RK--NRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred H-----------------HH--HHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 1 11 1125899999999998776554555543 445766665 555552 22334
Q ss_pred ceeccCCCHHHHHHHHHHHhccCCCCC---CC-cCHHHHHHHHHHcCCchh
Q 003950 284 GYDLKPLNDEAARTLFRYSANLQDGNS---YI-PDENLVNKILRACKGCPL 330 (784)
Q Consensus 284 ~~~l~~L~~~~a~~lf~~~a~~~~~~~---~~-~~~~~~~~i~~~~~g~PL 330 (784)
++.+++|+.++-.+++.+.+......- .. -.+++...++..++|---
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 899999999999999988443322211 11 135677888999998653
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=1.7e-06 Score=96.67 Aligned_cols=175 Identities=17% Similarity=0.189 Sum_probs=111.0
Q ss_pred CCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccccc-------------------ccCCceEEE
Q 003950 136 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG-------------------KFKDNIFFV 195 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~~wv 195 (784)
-.++||.+..++.|..++..+. .+.+.++|..|+||||+|+.+.+...-.. .|.. ++++
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D-viEI 93 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD-YVEM 93 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce-EEEe
Confidence 3568999999999999988665 46678999999999999998876211110 1111 1222
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceE
Q 003950 196 TVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKI 270 (784)
Q Consensus 196 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~i 270 (784)
+.+..... ++..+.+.... .-..++.-++|||+++..... +++.+....+..++
T Consensus 94 DAas~rgV---------------------DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 94 DAASNRGV---------------------DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred cccccccH---------------------HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 22111111 11111111111 112456668999999877642 55555555567888
Q ss_pred EEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch-hHHHHH
Q 003950 271 LVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP-LALTVV 335 (784)
Q Consensus 271 ivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 335 (784)
|+||.+.. ..-...+.++.++.++..+.+.+.+...+. .-..+..+.|++.++|.. -|+..+
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI---~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI---AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 88888762 122337999999999999999887654432 124678889999999966 455543
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=1.6e-09 Score=113.78 Aligned_cols=168 Identities=25% Similarity=0.397 Sum_probs=83.3
Q ss_pred EEEecccCCCCc--cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEcc
Q 003950 576 RIRLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRIT 653 (784)
Q Consensus 576 ~L~L~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 653 (784)
..+++.|.+..+ ....|..|..|.+..|.+..+..... .+..|.+|+|+.|. +..+|..++.|+ |+.|-++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~-----~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAIC-----NLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccceecchhhh-----hhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEe
Confidence 344555555444 22233444444444443333222111 34455555555543 333444455443 5555555
Q ss_pred CCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcC
Q 003950 654 NCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELP 733 (784)
Q Consensus 654 ~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp 733 (784)
+|+ ++.+|..++.+..|..|+.+.|.+ ..+|..++++.+|+.|.+..|+ ...+|.++..|+ |..||+++|+++.||
T Consensus 152 NNk-l~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~-l~~lp~El~~Lp-Li~lDfScNkis~iP 227 (722)
T KOG0532|consen 152 NNK-LTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLP-LIRLDFSCNKISYLP 227 (722)
T ss_pred cCc-cccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCc-eeeeecccCceeecc
Confidence 533 455555555555555555555432 3455555555555555555553 333444555333 555555555555555
Q ss_pred hhhhCCCCCCEEeCCCCchhc
Q 003950 734 SSILNLENLEVVKCDEETAYQ 754 (784)
Q Consensus 734 ~~l~~l~~L~~L~l~~~~~~~ 754 (784)
..+.+|+.|++|.+++|.+..
T Consensus 228 v~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhhhheeeeeccCCCCC
Confidence 555555555555555555433
No 52
>PRK06893 DNA replication initiation factor; Validated
Probab=98.64 E-value=7e-07 Score=88.88 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=89.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 237 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 237 (784)
.+.+.|+|++|+|||+||+++++ ........ +.|+++.... .... +.++.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~-~~y~~~~~~~---~~~~------------------------~~~~~ 88 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRT-AIYIPLSKSQ---YFSP------------------------AVLEN 88 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCC-eEEeeHHHhh---hhhH------------------------HHHhh
Confidence 46789999999999999999998 43333333 5577663110 0000 11111
Q ss_pred cCCCcEEEEEeCCCCCc---hH---HHhhhhcc-CCCceEEE-eccccc-------------ccCCCceeccCCCHHHHH
Q 003950 238 IRPEAILLVLDDVWSGS---ES---LLQKFKFQ-LPYYKILV-TSRSVF-------------PQFGSGYDLKPLNDEAAR 296 (784)
Q Consensus 238 l~~kr~LlVlDdv~~~~---~~---~~~~~~~~-~~gs~iiv-TtR~~~-------------~~~~~~~~l~~L~~~~a~ 296 (784)
+. +.-+||+||+|... +| +...+... ..|..+|| |+.... ...+.++++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 12 23489999998642 22 22223222 23556655 444321 122347899999999999
Q ss_pred HHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 297 TLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 297 ~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
+++.+.++..+. .-.++...-|++++.|..-++..+
T Consensus 168 ~iL~~~a~~~~l---~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 168 IVLQRNAYQRGI---ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHH
Confidence 999998875542 223778889999999887666544
No 53
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=5.2e-08 Score=90.99 Aligned_cols=125 Identities=18% Similarity=0.285 Sum_probs=50.7
Q ss_pred cCCCCCCcEEEccCCCCCCCCchhcc-CCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhh-hCCCC
Q 003950 641 LCDIVSIKKLRITNCHKLSALPEGIG-KLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERI-GELCS 718 (784)
Q Consensus 641 i~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l-~~l~~ 718 (784)
+.+..+++.|+|.+|. +..+. .++ .+.+|+.|++++|.+.. + +.+..+++|+.|++++|.+. .++..+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccc-ccccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 4566689999999976 44443 566 58899999999977654 4 35788999999999999654 455455 46899
Q ss_pred CCEEeccCCCCCCcC--hhhhCCCCCCEEeCCCCchhc----HHHHhhcCCCcEEeee
Q 003950 719 LKTLCLKGCSMFELP--SSILNLENLEVVKCDEETAYQ----WEYFQLGQAKFRIEVI 770 (784)
Q Consensus 719 L~~L~l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~~~----~~~~~~~lp~L~i~~~ 770 (784)
|++|++++|.+..+. ..+..+++|+.|++.+|+... ...+-..+|+|+....
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999999999987543 457889999999999997754 3445556999865443
No 54
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.9e-06 Score=89.63 Aligned_cols=197 Identities=14% Similarity=0.136 Sum_probs=126.2
Q ss_pred CCCCCCCCchhHHHHHHHH----hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCc-eEEEEeCCCCCHHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDN-IFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~~wv~~~~~~~~~~~~~~i 210 (784)
|..+.+|+++++++...|. ...+.-+.|+|.+|+|||+.++.+.+ ++....+.. +++|++....++.+++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 4458999999999998887 33344599999999999999999998 666655443 6799999999999999999
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch---HHH-hhhhccCC-CceEEEe--cccc------
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE---SLL-QKFKFQLP-YYKILVT--SRSV------ 277 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~---~~~-~~~~~~~~-gs~iivT--tR~~------ 277 (784)
+++++..........+..+.+.+.+.. .++.++||||++..... ..+ .-+..... .++|++- +-+.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~-~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSK-KGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHh-cCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999974433333445555666665532 67899999999965432 122 22222222 3444333 2222
Q ss_pred -----cccCCCceeccCCCHHHHHHHHHHHhc---cCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 278 -----FPQFGSGYDLKPLNDEAARTLFRYSAN---LQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 278 -----~~~~~~~~~l~~L~~~~a~~lf~~~a~---~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
..-....+..+|-+.+|-...+..++- ..+...+..++-++...++..|---.||..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 011112477899999999999887663 3322122222334444444444445566554
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.60 E-value=1.3e-06 Score=83.32 Aligned_cols=165 Identities=21% Similarity=0.257 Sum_probs=89.8
Q ss_pred CCCCCCCCCCchhHHHHHHHH-----hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHH
Q 003950 134 DPPPVTPGLDVPLQELKLELF-----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQ 208 (784)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~-----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 208 (784)
..-.+|||-+.-++.+.-++. .+...-+.+||++|+||||||..+++ .....| .+.+.+......+
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~----~~~sg~~i~k~~d--- 91 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF----KITSGPAIEKAGD--- 91 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E----EEEECCC--SCHH---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe----EeccchhhhhHHH---
Confidence 344689999988887765554 23467899999999999999999998 444333 2333211111111
Q ss_pred HHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhc--------cCCCc--------
Q 003950 209 KVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKF--------QLPYY-------- 268 (784)
Q Consensus 209 ~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~--------~~~gs-------- 268 (784)
+..++..+ +++-+|.+|+++.-... +...... .++++
T Consensus 92 ----------------------l~~il~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 92 ----------------------LAAILTNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp ----------------------HHHHHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred ----------------------HHHHHHhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 12222222 24557788999876633 2222211 12222
Q ss_pred ---eEEEecccccc------cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 269 ---KILVTSRSVFP------QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 269 ---~iivTtR~~~~------~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
-|=.|||.... ..+.+.+++..+.+|-.++..+.+..-+. .-.++.+.+|++++.|-|--+.
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHH
Confidence 24456776521 12235689999999999999876644332 2247899999999999995443
No 56
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.9e-06 Score=92.19 Aligned_cols=187 Identities=15% Similarity=0.122 Sum_probs=107.0
Q ss_pred CCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-..++|.+..++.+...+..+. .+.+.++|+.|+||||+|+.+++...-...+.. .....-.....+....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~--------~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS--------NPCRKCIICKEIEKGL 86 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC--------CCCCCCHHHHHHhcCC
Confidence 3578999999999998888655 467899999999999999999873110000000 0000000001111100
Q ss_pred CCCC----CCCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------
Q 003950 215 GYAV----PEFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 278 (784)
Q Consensus 215 ~~~~----~~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 278 (784)
.... .......+....+...+. ...+++-++|+|++...... ++..+....+..++|++|.+..
T Consensus 87 ~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 87 CLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 0000 000001111112222211 11356679999999776642 4444544445677777775541
Q ss_pred ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 279 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 279 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
......+++.+++.++..+.+.+.+...+. .-.++.+..|++.++|.|-.+.
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 112347999999999999888876644332 1236778889999999885443
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=3.2e-08 Score=95.88 Aligned_cols=214 Identities=17% Similarity=0.184 Sum_probs=133.4
Q ss_pred ChhccCCCCCcEEEeecc-c------ccCCcCcCccccCCCCCCCEEEecccCCCCc--cccccccCceeeeeecccccc
Q 003950 538 PKFLEKMDKLKVMIVTNY-G------FFPAELSNIQVFGALSNLKRIRLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQV 608 (784)
Q Consensus 538 p~~l~~l~~L~~L~l~~~-~------~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~ 608 (784)
...+.-+..|.+|.++.. + ++|.-+ .| .+.-+.+|+.+.++.+.-..+ ....-+.|.++...+......
T Consensus 175 ~hildf~~~l~~l~vs~~~~p~~~sni~~~~l-~f-~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~ 252 (490)
T KOG1259|consen 175 SHVLDFCTQLVALVVTPVKDPIDRSNIIPNRL-SF-NLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDV 252 (490)
T ss_pred HHHHHhhhheeEEEecCCCCCCcccccccccc-cc-chHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccc
Confidence 334555778899988873 1 122111 11 133445566666666554333 111223455555554433221
Q ss_pred ccCccccccccCCceEEEEEeCC---CCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCC
Q 003950 609 VQNSTFHFSDAFPNLLEIDIDYC---NDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSAL 685 (784)
Q Consensus 609 ~~~~~~~~~~~l~~L~~L~L~~~---~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 685 (784)
.... |.-...|.+.- ...|..-..+...+.|+.||||+|. +..+..++.-+|.++.|++++|.+...
T Consensus 253 ~~l~--------pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v- 322 (490)
T KOG1259|consen 253 PSLL--------PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTV- 322 (490)
T ss_pred cccc--------chhhhcCccCCCCCccCCceEEecchHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeee-
Confidence 1111 11011111110 0112222234445689999999975 778888999999999999999877543
Q ss_pred cccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHHHHhh--cCC
Q 003950 686 PDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEYFQL--GQA 763 (784)
Q Consensus 686 p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~--~lp 763 (784)
.++..+++|++|+|++|.+ ..+-.+=.++.++++|.+++|.+..+ +++.+|-+|..|++.+|.....+.+++ .+|
T Consensus 323 -~nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP 399 (490)
T KOG1259|consen 323 -QNLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP 399 (490)
T ss_pred -hhhhhcccceEeecccchh-HhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhccccccc
Confidence 3488899999999999854 44444445788999999999999887 478889999999999999888777664 145
Q ss_pred CcE
Q 003950 764 KFR 766 (784)
Q Consensus 764 ~L~ 766 (784)
-|.
T Consensus 400 CLE 402 (490)
T KOG1259|consen 400 CLE 402 (490)
T ss_pred HHH
Confidence 443
No 58
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.2e-06 Score=96.67 Aligned_cols=173 Identities=18% Similarity=0.195 Sum_probs=109.4
Q ss_pred CCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccc-------------------cccCCceEEE
Q 003950 136 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVL-------------------GKFKDNIFFV 195 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~~wv 195 (784)
-..+||.+..++.|..++..+. ...+.++|+.|+||||+|+.+++...-. +.|.. ++.+
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD-viEI 92 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID-LIEI 92 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc-eEEe
Confidence 3578999999999999998665 5688999999999999999988621100 01111 1122
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceE
Q 003950 196 TVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKI 270 (784)
Q Consensus 196 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~i 270 (784)
+.+..... ++..+.+...- ....+++-++|+|+|...... ++..+....++.++
T Consensus 93 DAAs~~~V---------------------ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 93 DAASRTKV---------------------EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred cccccCCH---------------------HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 22111111 11111111111 112467779999999876532 44444444456788
Q ss_pred EEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 271 LVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 271 ivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
|++|.+.. ......+++++++.++..+.+.+.+...+. .-..+....|++.++|.+-.+.
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 88776641 233448999999999999988887755432 2246778899999999874443
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=4.2e-08 Score=107.26 Aligned_cols=127 Identities=29% Similarity=0.484 Sum_probs=57.3
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
.+++|+.|+++.|++ ..+|...+.++.|+.|++++|. +..+|..+..+.+|++|.+++|. ....+..+..++++..|
T Consensus 161 ~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 161 NLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred ccccccccccCCchh-hhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 344555555555432 2233333344455555555533 44444444444445555555432 12333344444445444
Q ss_pred eccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCC
Q 003950 699 DISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEE 750 (784)
Q Consensus 699 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~ 750 (784)
.+.+|. ...++..++.+++|++|++++|.++.++. +..+.+|+.|+++++
T Consensus 238 ~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 238 ELSNNK-LEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccCCce-eeeccchhccccccceecccccccccccc-ccccCccCEEeccCc
Confidence 444432 22223344455555555555555554443 445555555555443
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=98.56 E-value=1.8e-06 Score=90.88 Aligned_cols=176 Identities=12% Similarity=0.085 Sum_probs=108.3
Q ss_pred CCCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccccc-ccccCCceEEEEeCCCCCHHHHHHHHHHH
Q 003950 135 PPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQV-LGKFKDNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
.-..++|.+..++.|..++..+..+-+.++|++|+||||+|+.+++ .+ ...|...++-++.++..... .++.+++.
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln~sd~~~~~-~vr~~i~~ 87 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELNASDDRGID-VVRNKIKM 87 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeecccccccHH-HHHHHHHH
Confidence 3456789988888888887766666788999999999999999987 33 22233222222223222222 22222222
Q ss_pred cCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCC
Q 003950 214 KGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGS 283 (784)
Q Consensus 214 l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~ 283 (784)
+..... ..-.++.-++++|+++..... +...+....+.+++|+++.... .....
T Consensus 88 ~~~~~~----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 88 FAQKKV----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHhccc----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 110000 000245679999999776533 3333333345577777775531 11234
Q ss_pred ceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHH
Q 003950 284 GYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 332 (784)
Q Consensus 284 ~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 332 (784)
.+++++++.++..+.+...+-..+.. -.++....|++.++|..-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~---i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVP---YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 78999999999999988877544321 13677899999999976443
No 61
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.55 E-value=5.7e-08 Score=113.53 Aligned_cols=154 Identities=27% Similarity=0.431 Sum_probs=119.6
Q ss_pred ccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCC-CCCCC-cccCCCCCCcEEEccCCCCCCCCchhccCC
Q 003950 591 RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCND-LIELP-DGLCDIVSIKKLRITNCHKLSALPEGIGKL 668 (784)
Q Consensus 591 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l 668 (784)
.....+.+.+.++.+....... ..++|++|-+..|.. ...++ ..|..++.|++|||++|...+.+|..|+.|
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~------~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSS------ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred chhheeEEEEeccchhhccCCC------CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 4466778888887766554443 456899999998862 34444 447789999999999999999999999999
Q ss_pred CCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC---CcChhhhCCCCCCEE
Q 003950 669 VNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF---ELPSSILNLENLEVV 745 (784)
Q Consensus 669 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~---~lp~~l~~l~~L~~L 745 (784)
-+|++|++++ +.+..+|.++++|.+|.+|++..+.....+|.....|++|++|.+...... ..-..+.+|++|+.+
T Consensus 595 i~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 595 VHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 9999999998 556799999999999999999998777777776777999999999876533 122345666666666
Q ss_pred eCCCCc
Q 003950 746 KCDEET 751 (784)
Q Consensus 746 ~l~~~~ 751 (784)
.+....
T Consensus 674 s~~~~s 679 (889)
T KOG4658|consen 674 SITISS 679 (889)
T ss_pred eeecch
Confidence 664433
No 62
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.54 E-value=6.5e-06 Score=87.18 Aligned_cols=173 Identities=14% Similarity=0.165 Sum_probs=106.7
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEe--CCCCCHHHHHHHHHHHc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV--SQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~--~~~~~~~~~~~~i~~~l 214 (784)
..++|+++.++.+..++.....+.+.++|.+|+||||+|+.+.+.. ....+.. .++.+ +...... .....+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~--~~i~~~~~~~~~~~-~~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE--NFLELNASDERGID-VIRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc--ceEEeccccccchH-HHHHHHHHH
Confidence 5679999999999999887666678999999999999999998731 1122222 13333 2222111 111111111
Q ss_pred CCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCCc
Q 003950 215 GYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGSG 284 (784)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~~ 284 (784)
... .......+-+|++|++...... +...+....+.+.+|+++.... ......
T Consensus 93 ~~~-----------------~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 93 ART-----------------APVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred Hhc-----------------CCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 100 0000234668999998765432 3333333445677887775431 112337
Q ss_pred eeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 285 YDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 285 ~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
+++++++.++....+...+...+. .-.++.+..+++.++|.+--+.
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~---~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGI---EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 899999999998888877754432 1236788999999999886543
No 63
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.6e-06 Score=98.67 Aligned_cols=173 Identities=17% Similarity=0.169 Sum_probs=108.1
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccccc-----cCCc---------------eEE
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGK-----FKDN---------------IFF 194 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~---------------~~w 194 (784)
-..+||-+.-+..|..++..+.. ..+.++|+.|+||||+|+.+++. +... .+|+ +++
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~--Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKG--LNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHh--ccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 35789999999999999887665 45689999999999999999873 2211 0110 111
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceE
Q 003950 195 VTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKI 270 (784)
Q Consensus 195 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~i 270 (784)
++........ .++.|.+.+.. ....+++-++|+|++...... ++..+.......++
T Consensus 93 idAas~~kVD-dIReLie~v~~-------------------~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 93 VDAASRTKVD-DTRELLDNVQY-------------------RPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred eccccccCHH-HHHHHHHHHHh-------------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 1111111111 11222211100 122477889999999877643 44444444456777
Q ss_pred EEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 271 LVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 271 ivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
|++|.+.. ......|.+++|+.++..+.+.+.+-..+. .-..+.+..|++.++|.|--+.
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 77766542 112347999999999999988876644321 2246788999999999885333
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=8.5e-08 Score=104.81 Aligned_cols=181 Identities=28% Similarity=0.346 Sum_probs=143.4
Q ss_pred EEEecccCC-CCc-cccccccCceeeeeeccccccccCccccccccC-CceEEEEEeCCCCCCCCCcccCCCCCCcEEEc
Q 003950 576 RIRLEHVSL-PSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAF-PNLLEIDIDYCNDLIELPDGLCDIVSIKKLRI 652 (784)
Q Consensus 576 ~L~L~~n~l-~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 652 (784)
.+.+..+.+ ... ....+..+..|++.++.+..+.+... .+ ++|+.|+++.|.+ ..+|..++.+++|+.|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~-----~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIG-----LLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDL 170 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccc-----cchhhcccccccccch-hhhhhhhhcccccccccc
Confidence 567777766 332 34455678888888888877765442 34 3899999999854 456667899999999999
Q ss_pred cCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCc
Q 003950 653 TNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL 732 (784)
Q Consensus 653 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l 732 (784)
++|. +..+|...+.+++|+.|++++|. ...+|..+..+..|+.|.+++|. ....+..+.+++++..|.+.+|.+..+
T Consensus 171 ~~N~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~ 247 (394)
T COG4886 171 SFND-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDL 247 (394)
T ss_pred CCch-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeec
Confidence 9986 67788777789999999999955 56788877777789999999985 345566789999999999999999888
Q ss_pred ChhhhCCCCCCEEeCCCCchhcHHHHhhcCCCcE
Q 003950 733 PSSILNLENLEVVKCDEETAYQWEYFQLGQAKFR 766 (784)
Q Consensus 733 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~lp~L~ 766 (784)
+..++.+++++.|++++|....+..+.. +.++.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~~~~-~~~l~ 280 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISSLGS-LTNLR 280 (394)
T ss_pred cchhccccccceeccccccccccccccc-cCccC
Confidence 8899999999999999998888776544 66664
No 65
>PRK04195 replication factor C large subunit; Provisional
Probab=98.52 E-value=8e-06 Score=90.94 Aligned_cols=170 Identities=15% Similarity=0.200 Sum_probs=109.1
Q ss_pred CCCCCCCCCchhHHHHHHHHh----CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHH
Q 003950 135 PPPVTPGLDVPLQELKLELFK----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
.-..++|.+..++++.+|+.. ...+.+.|+|++|+||||+|+.+++. + .|+ ++-++.++..+.. .+..+
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l--~~~--~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--Y--GWE--VIELNASDQRTAD-VIERV 84 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--c--CCC--EEEEcccccccHH-HHHHH
Confidence 345689999999999999873 12688999999999999999999983 2 122 3344555433322 23333
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhcccC-CCcEEEEEeCCCCCch----H----HHhhhhccCCCceEEEeccccc---
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPIR-PEAILLVLDDVWSGSE----S----LLQKFKFQLPYYKILVTSRSVF--- 278 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~-~kr~LlVlDdv~~~~~----~----~~~~~~~~~~gs~iivTtR~~~--- 278 (784)
+...... ..+. .++-+||+|+++.... . +...+. .++..||+|+.+..
T Consensus 85 i~~~~~~------------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 85 AGEAATS------------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHhhcc------------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 3221110 1112 3678999999976432 1 222222 23456777775541
Q ss_pred ----ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 279 ----PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 279 ----~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
......+.+++++.++....+...+...+.. -..++...|++.++|..-.+..
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~---i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE---CDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1223478899999999998888777554432 2367889999999998765543
No 66
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.51 E-value=2.1e-06 Score=85.83 Aligned_cols=162 Identities=19% Similarity=0.231 Sum_probs=98.5
Q ss_pred CCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCC
Q 003950 142 LDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEF 221 (784)
Q Consensus 142 r~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 221 (784)
.+..++.+.+++.......|.|+|.+|+|||+||+.+++. ....... +++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~-~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAA--AEERGKS-AIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCc-EEEEeHHHHHH------hH-----------
Confidence 3346677777765566788999999999999999999973 3222222 44665432211 00
Q ss_pred CChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc---hH---HHhhhhc-cCCCceEEEecccccc-----------c--C
Q 003950 222 QTDEDAINDLERLLKPIRPEAILLVLDDVWSGS---ES---LLQKFKF-QLPYYKILVTSRSVFP-----------Q--F 281 (784)
Q Consensus 222 ~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~---~~---~~~~~~~-~~~gs~iivTtR~~~~-----------~--~ 281 (784)
...+..+.+ .-+||+||+.... .+ +...+.. ...+..+|+||+.... . .
T Consensus 82 ----------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 82 ----------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ----------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc
Confidence 011111122 2389999996543 11 2222221 1234588898875411 0 1
Q ss_pred CCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHh
Q 003950 282 GSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGG 337 (784)
Q Consensus 282 ~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 337 (784)
...+++++++.++...++...+-..+. .-.++..+.|++.+.|.|..+..+..
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 346889999999999988775532221 12367778888899999987775543
No 67
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.51 E-value=1.9e-07 Score=84.39 Aligned_cols=116 Identities=22% Similarity=0.401 Sum_probs=75.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccc----CCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF----KDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLE 232 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 232 (784)
+.+++.|+|.+|+|||++++.+.+. ....+ ...++|+.++...+...+...++++++.............+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4578999999999999999999873 22211 44577999988779999999999999877655334444445555
Q ss_pred HHhcccCCCcEEEEEeCCCCC-chHHHhhhhc--cCCCceEEEeccc
Q 003950 233 RLLKPIRPEAILLVLDDVWSG-SESLLQKFKF--QLPYYKILVTSRS 276 (784)
Q Consensus 233 ~~~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~--~~~gs~iivTtR~ 276 (784)
+.+. +.+..+||+|++... ....+..+.. ..++.++|+..+.
T Consensus 81 ~~l~--~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALD--RRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHH--HCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHH--hcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 5553 233379999999765 4433333322 2556677776654
No 68
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.49 E-value=8.2e-07 Score=82.05 Aligned_cols=121 Identities=15% Similarity=0.194 Sum_probs=74.3
Q ss_pred CCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC
Q 003950 140 PGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP 219 (784)
Q Consensus 140 vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 219 (784)
+|++..+..+...+.....+.+.|+|.+|+|||++|+.+++. .. .....++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~--~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANE--LF-RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH--hh-cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 478888899988887766789999999999999999999983 32 123346677765543322221111100
Q ss_pred CCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc----hHHHhhhhcc------CCCceEEEeccccc
Q 003950 220 EFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS----ESLLQKFKFQ------LPYYKILVTSRSVF 278 (784)
Q Consensus 220 ~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----~~~~~~~~~~------~~gs~iivTtR~~~ 278 (784)
...... ......++.+||+||++... ..+...+... ..+..||+||....
T Consensus 72 --------~~~~~~-~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLF-ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHH-HhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 000011 11224677899999998642 2233333332 35778888887653
No 69
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.2e-06 Score=94.49 Aligned_cols=192 Identities=13% Similarity=0.099 Sum_probs=109.0
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCCCCHHHHHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
-.++||-+.-++.|.+++..+.. +.+.++|..|+||||+|+.+.+...-...- ..+.- +.....-...+.|...
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHcC
Confidence 35689999999999999986664 567999999999999999987621110000 00000 0000000111111100
Q ss_pred -----cCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc-----
Q 003950 214 -----KGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF----- 278 (784)
Q Consensus 214 -----l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~----- 278 (784)
+..........++..+.+.... ....++.-++|+|+++..... ++..+.....++++|++|.+..
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 0000000001122222222211 122567779999999877643 5555554455677777666541
Q ss_pred -ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 279 -PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 279 -~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
..-...+.++.++.++..+.+.+.+...+. ....+..+.|++.++|.|.-...
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi---~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGI---AHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 112347999999999999988877644332 12356678899999999964443
No 70
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=8.5e-06 Score=85.79 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=116.1
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccc----cCCceEEEEeCCCCCHHH
Q 003950 131 SAPDPPPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK----FKDNIFFVTVSQTPNVKG 205 (784)
Q Consensus 131 ~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~~wv~~~~~~~~~~ 205 (784)
..|.....++|.+...+.+...+..+. ...+.|+|+.|+||||+|..+.+ .+-.+ +.. . ..........
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~--~Llc~~~~~~~~-~---~~~~~~~~c~ 90 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLAN--HILSHPDPAEAP-E---TLADPDPASP 90 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHH--HHcCCCccccCc-c---ccCCCCCCCH
Confidence 455566788999999999999988665 46799999999999999998877 22211 111 0 0011111112
Q ss_pred HHHHHHHHcC-------CCCCC------CCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhhccCC
Q 003950 206 IVQKVYQHKG-------YAVPE------FQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLP 266 (784)
Q Consensus 206 ~~~~i~~~l~-------~~~~~------~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~ 266 (784)
..+.+...-. .+... ..-..+....+.+.+. ...+++-++|+|++...... ++..+....+
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 3333322211 00000 0011233334444442 23567789999999876632 5555554444
Q ss_pred CceEEEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 267 YYKILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 267 gs~iivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
+..+|++|.... ......+.+.+++.++..+++.+.+... . -.++.+..|++.++|.|..+..+
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 556555554431 1223489999999999999998743211 1 22566789999999999866543
No 71
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=4.3e-06 Score=92.26 Aligned_cols=189 Identities=15% Similarity=0.117 Sum_probs=109.4
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-..++|-+..++.|..++..+.. ..+.++|++|+||||+|+.+++...-.+.++..| |.+.+... ...-...-+..+
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~c-g~C~sc~~-i~~~~h~dv~el 90 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPC-GECESCLA-VRRGAHPDVLEI 90 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCC-CcChhhHH-HhcCCCCceEEe
Confidence 35679999888888888886654 5679999999999999999987422112222111 33221100 000000000000
Q ss_pred CCCCCCCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCC
Q 003950 215 GYAVPEFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFG 282 (784)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~ 282 (784)
... . ....+....+..... -..+++-++|+|+++..... ++..+....+.+.+|++|.... ....
T Consensus 91 ~~~--~-~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 91 DAA--S-NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred ccc--c-cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 000 0 011112222222221 12466779999999866533 4444444445566666664431 1223
Q ss_pred CceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHH
Q 003950 283 SGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 332 (784)
Q Consensus 283 ~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 332 (784)
..+++.+++.++..+.+.+.+...+. .-.++.+..|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi---~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGR---EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 47999999999999999887755443 124678899999999998544
No 72
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=8.5e-06 Score=86.28 Aligned_cols=197 Identities=12% Similarity=0.042 Sum_probs=112.0
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEE--EeCCCCCHHHHHH
Q 003950 132 APDPPPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFV--TVSQTPNVKGIVQ 208 (784)
Q Consensus 132 ~~~~~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv--~~~~~~~~~~~~~ 208 (784)
.|.....++|.+..++.+.+.+..+. ...+.++|+.|+||+|+|..+.+.---.........-. ..-.....-...+
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 44455678999999999999988766 45699999999999999988876210001000000000 0000000001112
Q ss_pred HHHHHcCCC-------CCC------CCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCce
Q 003950 209 KVYQHKGYA-------VPE------FQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYK 269 (784)
Q Consensus 209 ~i~~~l~~~-------~~~------~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~ 269 (784)
.+...-... ..+ ..-..+.+..+.+.+ ....+++.++|+||+...+.. ++..+....+++.
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 221110000 000 001122233333333 222467789999999766633 5555555455677
Q ss_pred EEEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 270 ILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 270 iivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
+|++|.+.. ......+.+.+++.++..+++...... ...+....++..++|.|..+..+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-------~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-------LPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 787777652 222347999999999999999875411 12233378899999999866544
No 73
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=5.6e-06 Score=88.38 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=103.9
Q ss_pred CCCCCCCchhHHHHHHHHhCC----------cEEEEEEcCCCCcHHHHHHHHhcccccc------------------ccc
Q 003950 137 PVTPGLDVPLQELKLELFKDG----------RQVIVVSAPGGYGKTTLVKKLCKDDQVL------------------GKF 188 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~----------~~vv~I~G~~GiGKTtLa~~v~~~~~~~------------------~~f 188 (784)
..++|-+..++.|..++..+. .+.+.++|++|+|||++|+.++....-. +.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 357899999999999988543 5678899999999999999987521000 011
Q ss_pred CCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhh
Q 003950 189 KDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFK 262 (784)
Q Consensus 189 ~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~ 262 (784)
+. +.++..... ....+....+.+.. ....+++-++|+|++...... ++..+.
T Consensus 85 pD-~~~i~~~~~---------------------~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 85 PD-VRVVAPEGL---------------------SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CC-EEEeccccc---------------------cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 11 112211100 00111111222221 112456668888999776532 555555
Q ss_pred ccCCCceEEEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 263 FQLPYYKILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 263 ~~~~gs~iivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
...++..+|++|.+.. ..-...+.+++++.++..+.+.... + ..++.+..++..++|.|.....+
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~-----~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---G-----VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---C-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5556777777777651 1223478999999999988886432 1 12466788999999999765443
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.43 E-value=2.2e-06 Score=98.19 Aligned_cols=169 Identities=16% Similarity=0.181 Sum_probs=98.7
Q ss_pred CCCCCCCCchhH---HHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 003950 136 PPVTPGLDVPLQ---ELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQ 212 (784)
Q Consensus 136 ~~~~vGr~~~~~---~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 212 (784)
-.+++|.+..+. .+...+..+....+.++|++|+||||||+.+++ ....+|. .++... ....+ .+.+
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~----~lna~~-~~i~d-ir~~-- 96 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS----SLNAVL-AGVKD-LRAE-- 96 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH--HhcCcce----eehhhh-hhhHH-HHHH--
Confidence 356899888774 566666667777889999999999999999997 4433331 111110 00111 0111
Q ss_pred HcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhhc-cCCCceEEEe--ccccc-------ccCC
Q 003950 213 HKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKF-QLPYYKILVT--SRSVF-------PQFG 282 (784)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~-~~~gs~iivT--tR~~~-------~~~~ 282 (784)
.......+. ..+++.+||+||++.........+.. ...|+.++|+ |.+.. ....
T Consensus 97 ---------------i~~a~~~l~-~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~ 160 (725)
T PRK13341 97 ---------------VDRAKERLE-RHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRS 160 (725)
T ss_pred ---------------HHHHHHHhh-hcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccc
Confidence 111111111 12567899999997665433333322 2335555553 34331 1123
Q ss_pred CceeccCCCHHHHHHHHHHHhccC----CCCCCCcCHHHHHHHHHHcCCchh
Q 003950 283 SGYDLKPLNDEAARTLFRYSANLQ----DGNSYIPDENLVNKILRACKGCPL 330 (784)
Q Consensus 283 ~~~~l~~L~~~~a~~lf~~~a~~~----~~~~~~~~~~~~~~i~~~~~g~PL 330 (784)
..+.+++|+.++...++.+.+-.. +.....-.++....|++.+.|..-
T Consensus 161 ~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 161 RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 479999999999999988765310 010111236777889999998753
No 75
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=4.5e-06 Score=92.25 Aligned_cols=174 Identities=18% Similarity=0.220 Sum_probs=106.6
Q ss_pred CCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccccc---------------------ccCCceEE
Q 003950 137 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG---------------------KFKDNIFF 194 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---------------------~f~~~~~w 194 (784)
..++|-+..++.+...+..+. ...+.++|+.|+||||+|+.+++. +.. .|.. +++
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~--L~c~~~~~~~pCg~C~sC~~i~~~~~~d-lie 92 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKC--LNCKTGVTAEPCNKCENCVAINNNSFID-LIE 92 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH--hCCCCCCCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 567999999999998888655 456889999999999999999862 211 1222 223
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceE
Q 003950 195 VTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKI 270 (784)
Q Consensus 195 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~i 270 (784)
++.......++ .+.+++.+. . ....+++-++|+|++...... ++..+....+.+.+
T Consensus 93 idaas~~gvd~-ir~ii~~~~-----------------~--~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 93 IDAASRTGVEE-TKEILDNIQ-----------------Y--MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred eecccccCHHH-HHHHHHHHH-----------------h--hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 32211111111 111211110 0 112467779999999766542 44444444445666
Q ss_pred EEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch-hHHHHHH
Q 003950 271 LVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP-LALTVVG 336 (784)
Q Consensus 271 ivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 336 (784)
|++|.+.. ...+..+++.+++.++..+.+.+.+...+. .-.++....|++.++|.+ -|+..+-
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 65554431 222348999999999988887776543322 224677789999999976 4554443
No 76
>PRK08727 hypothetical protein; Validated
Probab=98.42 E-value=7.8e-06 Score=81.54 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=96.3
Q ss_pred CCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCC
Q 003950 138 VTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYA 217 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 217 (784)
.++|-...+..+...........+.|+|.+|+|||+|++++++ ....... ++.++++.+ ....+.+
T Consensus 21 f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~-~~~y~~~~~------~~~~~~~----- 86 (233)
T PRK08727 21 YIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCA--AAEQAGR-SSAYLPLQA------AAGRLRD----- 86 (233)
T ss_pred ccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCC-cEEEEeHHH------hhhhHHH-----
Confidence 3344434444443333333446799999999999999999987 3333322 355776422 1111111
Q ss_pred CCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc---hH---HHhhhhc-cCCCceEEEecccccc-----------
Q 003950 218 VPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS---ES---LLQKFKF-QLPYYKILVTSRSVFP----------- 279 (784)
Q Consensus 218 ~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~---~~---~~~~~~~-~~~gs~iivTtR~~~~----------- 279 (784)
.++.+ .+.-+||+||+.... ++ +...+.. ...|..||+||+....
T Consensus 87 ----------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 87 ----------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred ----------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 11111 233589999996432 11 2222222 2346679999987521
Q ss_pred --cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHH
Q 003950 280 --QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 332 (784)
Q Consensus 280 --~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 332 (784)
..+..+.+++++.++-.+++.+++...+. .-.++...-|++.+.|-.-.+
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRGL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 12347899999999999999987754322 224678888999998766554
No 77
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.41 E-value=4.9e-07 Score=87.31 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=33.5
Q ss_pred CCCCCCchhHHHHHHHH---hCCcEEEEEEcCCCCcHHHHHHHHhcccccccc
Q 003950 138 VTPGLDVPLQELKLELF---KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK 187 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~ 187 (784)
.||||+++++++...|. ....+.+.|+|.+|+|||+|.++++. .+..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 37999999999999994 44579999999999999999999988 45544
No 78
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=5.9e-06 Score=91.44 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=108.0
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccc-------------------cccCCceEEE
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVL-------------------GKFKDNIFFV 195 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~~wv 195 (784)
-.++||-+.-++.|..++..+.. ..+.++|+.|+||||+|+.+++...-. +.|+. ++.+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d-~~ei 93 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD-LFEV 93 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce-EEEE
Confidence 35689999999999999986654 567899999999999999988621100 11222 2233
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEE
Q 003950 196 TVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKIL 271 (784)
Q Consensus 196 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~ii 271 (784)
+.+.....+++ +.+++.+.. ....++.-++|+|+|+..... ++..+....+.+++|
T Consensus 94 daas~~~v~~i-R~l~~~~~~-------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPY-------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred cccccCCHHHH-HHHHHHHhh-------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 32222222221 222222111 112466778999999876533 455555555567777
Q ss_pred Eeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 272 VTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 272 vTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
++|.+.. ...+..+++++++.++..+.+.+.+-..+. .-.++....|++.++|.+--+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi---~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV---EFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHH
Confidence 7765541 112346889999999888777666544332 1135677889999999885443
No 79
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=5.6e-06 Score=92.47 Aligned_cols=174 Identities=13% Similarity=0.167 Sum_probs=107.6
Q ss_pred CCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccccc-------------------ccCCceEEE
Q 003950 136 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG-------------------KFKDNIFFV 195 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~~wv 195 (784)
-..++|.+..+..|..++..++ .+.+.++|+.|+||||+|+.+.+...-.. .|.. ++.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D-vlEi 93 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD-LLEI 93 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc-eEEE
Confidence 3578999999999999998666 46789999999999999999876211000 0111 1122
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEE
Q 003950 196 TVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKIL 271 (784)
Q Consensus 196 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~ii 271 (784)
+.+...... .++.+++... . .-..+++-++|+|++...... ++..+......+++|
T Consensus 94 daAs~~gVd-~IRelle~a~------------------~-~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fI 153 (709)
T PRK08691 94 DAASNTGID-NIREVLENAQ------------------Y-APTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (709)
T ss_pred eccccCCHH-HHHHHHHHHH------------------h-hhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 211111111 1111111100 0 112356779999999776542 445554444567788
Q ss_pred Eeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 272 VTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 272 vTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
++|.+.. ......+.+.+++.++..+.+.+.+-..+. .-..+....|++.++|.+.-+.
T Consensus 154 LaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 154 LATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhCCCHHHHH
Confidence 7776542 112236888999999999998887755442 1246788999999999985443
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.2e-05 Score=88.29 Aligned_cols=190 Identities=18% Similarity=0.191 Sum_probs=106.9
Q ss_pred CCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-..++|-+.-+..+...+..+. .+.+.++|+.|+||||+|+.+++...-......+--+..+... .-...+....
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcCC
Confidence 3567999998988888777655 4688999999999999999998732111000000000000000 0011111000
Q ss_pred CC-----CCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEecccc-c-----
Q 003950 215 GY-----AVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSV-F----- 278 (784)
Q Consensus 215 ~~-----~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~-~----- 278 (784)
.. ........++..+.+.... .-+.+++-++|+|+++..... ++..+....+.+.+|++|... .
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 00 0000011122222221111 223567789999999876542 444454445566766555332 1
Q ss_pred ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHH
Q 003950 279 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 332 (784)
Q Consensus 279 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 332 (784)
......+++.+++.++..+.+.+.+...+. .-.++....|++.++|.+--+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 122347899999999999999888755442 123667788999999987443
No 81
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1e-05 Score=85.00 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=107.2
Q ss_pred CCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccc----ccccccCCceEEEEe-CCCCCHHHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDD----QVLGKFKDNIFFVTV-SQTPNVKGIVQKV 210 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~~wv~~-~~~~~~~~~~~~i 210 (784)
..++|-+..++.+..++..+. .+.+.++|+.|+||||+|+.++..- ....|.+. ..|... +.....++ ++.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~-~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDI-IEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCe-EEeccccCCCCCHHH-HHHH
Confidence 356898888999999988655 4677999999999999999988721 11223332 223221 12222222 2233
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch----HHHhhhhccCCCceEEEeccccc------cc
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE----SLLQKFKFQLPYYKILVTSRSVF------PQ 280 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~----~~~~~~~~~~~gs~iivTtR~~~------~~ 280 (784)
.+.+.. .-..+++-++|+|++..... .++..+....+++.+|++|.+.. ..
T Consensus 82 ~~~~~~-------------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 82 IEEVNK-------------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHhc-------------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 332221 11235666777777755443 26666666667889998886652 22
Q ss_pred CCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 281 FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 281 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
.+..+.+.++++++....+.+...+ ..++.++.++..++|.|..+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND-------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHHH
Confidence 2348899999999998877654311 1245577899999999876543
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4.4e-06 Score=89.83 Aligned_cols=185 Identities=13% Similarity=0.107 Sum_probs=107.1
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-..++|-+..+..|..++..+.. ..+.++|+.|+||||+|+.+++ .+...-+.. ...+.....- ..+....
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk--~Lnce~~~~--~~pCg~C~sC----~~i~~g~ 88 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK--RLNCENPIG--NEPCNECTSC----LEITKGI 88 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH--hcCcccccC--ccccCCCcHH----HHHHccC
Confidence 35679999999999888887664 4689999999999999999987 322111000 0011111111 1111111
Q ss_pred CCCCCC----CCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------
Q 003950 215 GYAVPE----FQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 278 (784)
Q Consensus 215 ~~~~~~----~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 278 (784)
...... .....+....+.+.+ ....++.-++|+|++...... ++..+........+|++|....
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 100000 001111122222222 122466779999999876643 4444433334556565555431
Q ss_pred ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhH
Q 003950 279 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLA 331 (784)
Q Consensus 279 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLa 331 (784)
..-...|.+.+++.++..+.+.+.+...+. .-.++....|++.++|.+--
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHH
Confidence 122336999999999998888877654332 12467889999999999843
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=8.9e-06 Score=88.59 Aligned_cols=173 Identities=18% Similarity=0.222 Sum_probs=110.2
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhccc------c------------cc-cccCCceEEE
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDD------Q------------VL-GKFKDNIFFV 195 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~------~------------~~-~~f~~~~~wv 195 (784)
-.++||-+.-++.+...+..+.. +.+.++|+.|+||||+|+.++..- . +. +.+.. ++.+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D-v~ei 90 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD-VIEI 90 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC-EEEE
Confidence 35789999888888888876665 479999999999999999887510 0 00 11122 3344
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEE
Q 003950 196 TVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKIL 271 (784)
Q Consensus 196 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~ii 271 (784)
+.++....++ .+.+++.... .-..+++-++|+|++...... ++..+....+.+++|
T Consensus 91 daas~~~vdd-IR~Iie~~~~-------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 91 DAASNTSVDD-IKVILENSCY-------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred ecccCCCHHH-HHHHHHHHHh-------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 4433322222 2222222110 112456778999999766542 555555555677777
Q ss_pred Eecccc------cccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHH
Q 003950 272 VTSRSV------FPQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 332 (784)
Q Consensus 272 vTtR~~------~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 332 (784)
++|... .......+.+.+++.++..+.+.+.+...+. .-.++....|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 777443 1223347899999999999998887755443 123677889999999987544
No 84
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=7e-06 Score=92.18 Aligned_cols=187 Identities=18% Similarity=0.120 Sum_probs=108.9
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-..+||-+..++.|...+..+.. ..+.++|..|+||||+|+.+++. +-.... . .+.....-...+.|...-
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~~-----~-~~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKG--LNCETG-----I-TATPCGECDNCREIEQGR 86 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh--hhhccC-----C-CCCCCCCCHHHHHHHcCC
Confidence 35789999999999888886654 55789999999999999999862 211000 0 000001111122221100
Q ss_pred C-----CCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------
Q 003950 215 G-----YAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 278 (784)
Q Consensus 215 ~-----~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 278 (784)
. .........++..+.+.... ....+++-++|+|+++..... ++..+....+..++|++|.+..
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 0 00000001122222122111 223577789999999876643 5555555555677777666542
Q ss_pred ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 279 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 279 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
..-...|.+++++.++..+.+.+.+-..+. ...++....|++.++|.+--+.
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 112347999999999999888876633322 1235677899999999885443
No 85
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.38 E-value=1.2e-05 Score=77.54 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=91.9
Q ss_pred HHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhccccccc---------------------ccCCceEEEEeCCCCCHHH
Q 003950 148 ELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLG---------------------KFKDNIFFVTVSQTPNVKG 205 (784)
Q Consensus 148 ~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~---------------------~f~~~~~wv~~~~~~~~~~ 205 (784)
.+.+.+..+.. ..+.++|+.|+||||+|+.+.. .+.. .++. ..++.........+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~--~l~~~~~~~~~~c~~~~~c~~~~~~~~~d-~~~~~~~~~~~~~~ 79 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAK--ALLCEQPGGGEPCGECPSCRLIEAGNHPD-LHRLEPEGQSIKVD 79 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH--HHcCCCCCCCCCCCCCHHHHHHHcCCCCc-EEEeccccCcCCHH
Confidence 45566665554 6799999999999999998876 3321 1111 11222111100111
Q ss_pred HHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc---
Q 003950 206 IVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF--- 278 (784)
Q Consensus 206 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~--- 278 (784)
.++++.+.+.. ....+.+-++|+|++...... ++..+....+.+.+|++|++..
T Consensus 80 ~i~~i~~~~~~-------------------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 80 QVRELVEFLSR-------------------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLL 140 (188)
T ss_pred HHHHHHHHHcc-------------------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCh
Confidence 11122222111 112456778999999765532 4455544445677777776541
Q ss_pred ---ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhH
Q 003950 279 ---PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLA 331 (784)
Q Consensus 279 ---~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLa 331 (784)
......+.+.+++.++..+.+.+. + . .++.+..|++.++|.|..
T Consensus 141 ~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i-----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 141 PTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I-----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-----CHHHHHHHHHHcCCCccc
Confidence 122348999999999998888775 1 1 256789999999998853
No 86
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=7.9e-06 Score=89.45 Aligned_cols=178 Identities=15% Similarity=0.186 Sum_probs=104.5
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccccc--c-CC---------------ceEEEE
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGK--F-KD---------------NIFFVT 196 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--f-~~---------------~~~wv~ 196 (784)
-..++|.+..+..|...+..+.. +.+.++|++|+||||+|+.+++...-... + ++ .++.++
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 35689998888888887776655 56899999999999999999873111000 0 00 011222
Q ss_pred eCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceE
Q 003950 197 VSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKI 270 (784)
Q Consensus 197 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~i 270 (784)
.+......+ ...+.... ....+++-++|+|+++..... ++..+....+...+
T Consensus 93 aa~~~gid~----------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 93 AASNRGIDE----------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred CcccCCHHH----------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 211111111 11122221 112456779999999765422 34444333334455
Q ss_pred EEecccc------cccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc-hhHHHHHHhh
Q 003950 271 LVTSRSV------FPQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC-PLALTVVGGS 338 (784)
Q Consensus 271 ivTtR~~------~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~~~ 338 (784)
|++|.+. .......+.+.+++.++....+...+...+. .-.++....|++.++|. +.|+..+..+
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5454432 1222347899999999998888887754332 12367788899888665 5666666543
No 87
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.2e-08 Score=98.78 Aligned_cols=148 Identities=17% Similarity=0.218 Sum_probs=81.5
Q ss_pred CceEEEEEeCCCCCCCC--CcccCCCCCCcEEEccCCCCCCCCchh-ccC-CCCCCEEEeecCCCC---CCCcccccCCC
Q 003950 621 PNLLEIDIDYCNDLIEL--PDGLCDIVSIKKLRITNCHKLSALPEG-IGK-LVNLQMLTLASCTDL---SALPDTIGNLS 693 (784)
Q Consensus 621 ~~L~~L~L~~~~~~~~l--p~~i~~l~~L~~L~L~~~~~~~~lp~~-l~~-l~~L~~L~L~~~~~~---~~~p~~~~~l~ 693 (784)
.+|+.|+|+.|+..++. .--+.+++.|..|+|++|......-.. +.+ -.+|..|+|+||... ..+..-...++
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 45666666665544332 112456667777777776554432211 111 145677777766432 12223345677
Q ss_pred CCCEEeccCCCCCCc-cchhhhCCCCCCEEeccCCCC-C-CcChhhhCCCCCCEEeCCCCchh-cHHHHhhcCCCcEEe
Q 003950 694 NLNFLDISECLNIQE-LPERIGELCSLKTLCLKGCSM-F-ELPSSILNLENLEVVKCDEETAY-QWEYFQLGQAKFRIE 768 (784)
Q Consensus 694 ~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~l~~n~l-~-~lp~~l~~l~~L~~L~l~~~~~~-~~~~~~~~lp~L~i~ 768 (784)
+|.+|||++|..++. .-..+.+++.|++|.++.|.. . +.--.+.+.|+|.+|+..+.-.+ ..+-+...+|+|+|.
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKIN 392 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccccc
Confidence 777788777755442 223456777788888777762 1 11124567777777776655333 345555557776554
No 88
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.35 E-value=1.4e-05 Score=79.76 Aligned_cols=166 Identities=16% Similarity=0.203 Sum_probs=98.3
Q ss_pred CCCCCCCCc-hhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDV-PLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~-~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
+..++|... .+..+.++....+.+.+.|+|++|+|||+|++++++ ..... ...+.++++......
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~--~~~~~-~~~v~y~~~~~~~~~----------- 87 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACA--ELSQR-GRAVGYVPLDKRAWF----------- 87 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH--HHHhC-CCeEEEEEHHHHhhh-----------
Confidence 345567333 233333333344557899999999999999999987 33322 234667766321000
Q ss_pred CCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc---hH---HHhhhhcc-CCC-ceEEEeccccc--------
Q 003950 215 GYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS---ES---LLQKFKFQ-LPY-YKILVTSRSVF-------- 278 (784)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~---~~---~~~~~~~~-~~g-s~iivTtR~~~-------- 278 (784)
. ..+.+.+ . +--+|++||+.... +| +...+... ..| .++|+||+...
T Consensus 88 ---------~----~~~~~~~---~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 88 ---------V----PEVLEGM---E-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred ---------h----HHHHHHh---h-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 0 0011111 1 12378999995432 11 22333322 234 47999998652
Q ss_pred -----ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 279 -----PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 279 -----~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
...+.++++++++.++-.+++.+++...+- .-.+++..-|++++.|..-++..+
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~---~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF---ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 122348999999999999998876644321 224788899999999877665543
No 89
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=1.4e-06 Score=78.06 Aligned_cols=114 Identities=27% Similarity=0.372 Sum_probs=70.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 237 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 237 (784)
.+++.|.|+.|+||||++++++.+.. -+..+++++..+.........++ ...+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~~--------------------~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPDL--------------------LEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhhh--------------------HHHHHHh
Confidence 36899999999999999999997322 22336677765432211100000 0111122
Q ss_pred cCCCcEEEEEeCCCCCchH--HHhhhhccCCCceEEEeccccccc--------CC--CceeccCCCHHHH
Q 003950 238 IRPEAILLVLDDVWSGSES--LLQKFKFQLPYYKILVTSRSVFPQ--------FG--SGYDLKPLNDEAA 295 (784)
Q Consensus 238 l~~kr~LlVlDdv~~~~~~--~~~~~~~~~~gs~iivTtR~~~~~--------~~--~~~~l~~L~~~~a 295 (784)
...++.+|+||+|....+| .+..+....+..+|++|+...... .+ ..+++.||+-.|.
T Consensus 58 ~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 2347889999999777654 344455555678999999876211 11 2678999987763
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1.6e-05 Score=88.05 Aligned_cols=192 Identities=16% Similarity=0.181 Sum_probs=107.0
Q ss_pred CCCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHH
Q 003950 135 PPPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
.-..++|.+..++.+..++..+. .+.+.++|+.|+||||+|+.+++. +. +.- |... .....-...+.+...
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~--L~----C~~-~~~~-~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKA--IN----CLN-PKDG-DCCNSCSVCESINTN 85 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHH--hc----CCC-CCCC-CCCcccHHHHHHHcC
Confidence 34578999999999999887654 467899999999999999999862 21 000 1110 011111111121111
Q ss_pred cCCCCC--C--CCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc-----
Q 003950 214 KGYAVP--E--FQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF----- 278 (784)
Q Consensus 214 l~~~~~--~--~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~----- 278 (784)
...... + .....+....+.... ....+++-++|+|++...... ++..+....+.+.+|++|....
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 100000 0 000111112222211 112344557999999765432 4444444444566666654331
Q ss_pred -ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchh-HHHHHHh
Q 003950 279 -PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVVGG 337 (784)
Q Consensus 279 -~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 337 (784)
...+..+++.+++.++....+...+...+. .-.++.+..+++.++|.+- |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi---~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKI---KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 222448899999999999888876644332 1136678899999999764 5544444
No 91
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.8e-05 Score=88.67 Aligned_cols=191 Identities=15% Similarity=0.175 Sum_probs=106.3
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccccccC-CceEEEEeCCCCCHHHHHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFK-DNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
-.++||-+.-+..|..++..+.. ..+.++|..|+||||+|+.+.+.-.-.+... .+.-. .....-...+.|...
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g 90 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSG 90 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcC
Confidence 35679988888888888886654 6779999999999999999865211000000 00000 000111111111110
Q ss_pred cC-----CCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEecccc------
Q 003950 214 KG-----YAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSV------ 277 (784)
Q Consensus 214 l~-----~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~------ 277 (784)
-. .........++..+.+.... .-..++.-++|+|+|+..... ++..+....+..++|++|.+.
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 00 00000001111111111111 122456668999999877643 344444334456777666543
Q ss_pred cccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 278 FPQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 278 ~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
....+..+++++++.++..+.+.+.+...+. .-..+....|++.++|.+--+.
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 1223458999999999999988877654432 1236778999999999875443
No 92
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.9e-05 Score=86.66 Aligned_cols=176 Identities=19% Similarity=0.232 Sum_probs=107.0
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccc-------------------cccCCceEEE
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVL-------------------GKFKDNIFFV 195 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~~wv 195 (784)
-.+++|-+..++.+..++..+.. +.+.++|+.|+||||+|+.+.+...-. +.|.. ++++
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d-~~ei 93 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD-LIEV 93 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc-eeEe
Confidence 35679999999999999886654 567899999999999999987621100 01111 1222
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEE
Q 003950 196 TVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKIL 271 (784)
Q Consensus 196 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~ii 271 (784)
+.+.....+ .++.+++.... .-..+++-++|+|++...... ++..+....+.+.+|
T Consensus 94 ~~~~~~~vd-~ir~l~~~~~~-------------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 94 DAASNTQVD-AMRELLDNAQY-------------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eccccCCHH-HHHHHHHHHhh-------------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 211111111 11122221110 122467779999999876642 455555544566777
Q ss_pred Eeccccc-c-----cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchh-HHHHH
Q 003950 272 VTSRSVF-P-----QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVV 335 (784)
Q Consensus 272 vTtR~~~-~-----~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 335 (784)
++|.+.. . ..+..+++++++.++..+.+.+.+...+. ...++....|++.++|.+- |+..+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6665441 1 11237899999999998888776643332 1246677899999999875 44433
No 93
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=6.1e-07 Score=68.53 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=30.4
Q ss_pred ceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCC
Q 003950 622 NLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCT 680 (784)
Q Consensus 622 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 680 (784)
+|++|++++|.+....+..+.++++|++|++++|.+....|..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555554443333455555555566555554433333455555555555555543
No 94
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.26 E-value=4.2e-05 Score=82.28 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=106.5
Q ss_pred CCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccc--ccc-CC---------------ceEEEE
Q 003950 136 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVL--GKF-KD---------------NIFFVT 196 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~f-~~---------------~~~wv~ 196 (784)
-..++|.+..++.+.+++..+. .+.+.++|++|+||||+|+.+.....-. ..+ ++ .+++++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~ 92 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEID 92 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEee
Confidence 3567999999999999988655 4578899999999999999887631100 011 00 011222
Q ss_pred eCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEE
Q 003950 197 VSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILV 272 (784)
Q Consensus 197 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iiv 272 (784)
.+...... ..+.+.+.+.. ....+++-++|+|++...... ++..+....+.+.+|+
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~-------------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKY-------------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred ccccCCHH-HHHHHHHHHhc-------------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 21111111 11222221110 112355668899998665432 4444544344567777
Q ss_pred eccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 273 TSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 273 TtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
+|.+.. ......+++.++++++..+.+...+-..+. .-.++.+..+++.++|.|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI---KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCChHHHHHH
Confidence 765431 122347888999999998888877644332 123678889999999998665543
No 95
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.26 E-value=1.9e-06 Score=90.30 Aligned_cols=134 Identities=27% Similarity=0.464 Sum_probs=83.9
Q ss_pred ccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCC
Q 003950 591 RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVN 670 (784)
Q Consensus 591 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 670 (784)
.+.+++.|++++|.+..+.. --++|+.|.+++|..+..+|..+. .+|++|++++|..+..+|. +
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--------LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------s 113 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--------LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------S 113 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--------CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------c
Confidence 46889999999997666531 234699999999888888887663 6899999999866777775 4
Q ss_pred CCEEEeecCC--CCCCCcccccCCCCCCEEeccCCCCC--CccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEe
Q 003950 671 LQMLTLASCT--DLSALPDTIGNLSNLNFLDISECLNI--QELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVK 746 (784)
Q Consensus 671 L~~L~L~~~~--~~~~~p~~~~~l~~L~~L~l~~n~~~--~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~ 746 (784)
|++|++.++. .++.+|.+ |+.|.+.++... ..+|.. -.++|++|++++|....+|..+. .+|+.|.
T Consensus 114 Le~L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPNG------LTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSIT 183 (426)
T ss_pred cceEEeCCCCCcccccCcch------Hhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEE
Confidence 6666676433 24455554 445554332211 111110 11467777777776555554443 3666666
Q ss_pred CCCC
Q 003950 747 CDEE 750 (784)
Q Consensus 747 l~~~ 750 (784)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 6554
No 96
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.25 E-value=6.9e-07 Score=68.22 Aligned_cols=40 Identities=30% Similarity=0.344 Sum_probs=15.5
Q ss_pred cccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCC
Q 003950 688 TIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGC 727 (784)
Q Consensus 688 ~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 727 (784)
.+.++++|++|++++|.+...-|..|..+++|++|++++|
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3334444444444443332222233344444444444444
No 97
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=4.1e-05 Score=82.49 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=103.6
Q ss_pred CCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccccc--------ccCCceEEEEeCCCCCHHHH
Q 003950 136 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG--------KFKDNIFFVTVSQTPNVKGI 206 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~--------~f~~~~~wv~~~~~~~~~~~ 206 (784)
-..++|.+..++.+.+.+..+. .+.+.++|++|+||||+|+.+.+ .+.. .|...++-++.....+..+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~--~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 92 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILAR--KINQPGYDDPNEDFSFNIFELDAASNNSVDD- 92 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCCCCCCCcceEEeccccCCCHHH-
Confidence 3567999999999999998655 46899999999999999999976 3221 2322222221111111111
Q ss_pred HHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc----
Q 003950 207 VQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF---- 278 (784)
Q Consensus 207 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~---- 278 (784)
.+.+++.+.. ....+++-++++|++...... ++..+....+.+.+|++|....
T Consensus 93 i~~l~~~~~~-------------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 93 IRNLIDQVRI-------------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred HHHHHHHHhh-------------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 2222222110 111345668999998655432 3333333233456666654331
Q ss_pred --ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHH
Q 003950 279 --PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 332 (784)
Q Consensus 279 --~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 332 (784)
......++++++++++....+...+...+.. -.++.+..+++.++|.+-.+
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~---i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK---FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhCCCCHHHH
Confidence 1223478999999999998888777554321 13678889999999976533
No 98
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.24 E-value=1.2e-05 Score=80.65 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=106.4
Q ss_pred CCCCCCCchh---HHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHH
Q 003950 137 PVTPGLDVPL---QELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 137 ~~~vGr~~~~---~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
.++||.+.-+ ..|.+++.++...-+.+||++|+||||||+.+.... +.+ ..++|..|-...-..-++.|+++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts--k~~---SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS--KKH---SYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc--CCC---ceEEEEEeccccchHHHHHHHHH
Confidence 3456655433 234455557788999999999999999999999843 222 14577777655444445555544
Q ss_pred cCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhhc-cCCCceEEE--eccccc-------ccCCC
Q 003950 214 KGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKF-QLPYYKILV--TSRSVF-------PQFGS 283 (784)
Q Consensus 214 l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~-~~~gs~iiv--TtR~~~-------~~~~~ 283 (784)
-.. . ..+.++|.+|.+|.|..-....-+.|.+ -..|+-++| ||.++. .....
T Consensus 213 aq~-----------------~-~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 213 AQN-----------------E-KSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCR 274 (554)
T ss_pred HHH-----------------H-HhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccc
Confidence 211 0 2236889999999997665444444443 345766665 566652 22344
Q ss_pred ceeccCCCHHHHHHHHHHHhc--cC-CC---CCCC----cCHHHHHHHHHHcCCch
Q 003950 284 GYDLKPLNDEAARTLFRYSAN--LQ-DG---NSYI----PDENLVNKILRACKGCP 329 (784)
Q Consensus 284 ~~~l~~L~~~~a~~lf~~~a~--~~-~~---~~~~----~~~~~~~~i~~~~~g~P 329 (784)
++.|+.|..++-..++.+..- ++ .. +-+. -...+.+-++..|.|-.
T Consensus 275 VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 899999999999998877332 11 11 1111 12456677777888865
No 99
>PF14516 AAA_35: AAA-like domain
Probab=98.23 E-value=8.4e-05 Score=78.28 Aligned_cols=201 Identities=16% Similarity=0.161 Sum_probs=124.1
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC-----CCHH
Q 003950 130 CSAPDPPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-----PNVK 204 (784)
Q Consensus 130 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~-----~~~~ 204 (784)
.+.|.+.+.+|.|...-+++.+.+.+. ...+.|.|+-.+|||+|..++.+. .+.. ...++++++... .+..
T Consensus 4 g~~~~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~--l~~~-~~~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 4 GPLPLDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLER--LQQQ-GYRCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCCCCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHH--HHHC-CCEEEEEEeecCCCcccCCHH
Confidence 455667778899996667777777653 468999999999999999999873 3322 334568888642 2455
Q ss_pred HHHHHHH----HHcCCCCC-------CCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCch------HHHhhhhcc--
Q 003950 205 GIVQKVY----QHKGYAVP-------EFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGSE------SLLQKFKFQ-- 264 (784)
Q Consensus 205 ~~~~~i~----~~l~~~~~-------~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~~------~~~~~~~~~-- 264 (784)
..++.++ ++++.... ..........-+.+.+ +. .+++.+|++|+|+...+ +++..+...
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~-~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQ-IDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhc-CCCCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 5555444 44443321 0111222333344433 22 37999999999964432 233322211
Q ss_pred -C---C--Cc--eEEEecccc---------cccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCC
Q 003950 265 -L---P--YY--KILVTSRSV---------FPQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKG 327 (784)
Q Consensus 265 -~---~--gs--~iivTtR~~---------~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g 327 (784)
. + .. -|++.+... .-..+..++|++++.+|...|...+-.. -..+..++|...++|
T Consensus 159 ~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-------~~~~~~~~l~~~tgG 231 (331)
T PF14516_consen 159 QRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-------FSQEQLEQLMDWTGG 231 (331)
T ss_pred hcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-------CCHHHHHHHHHHHCC
Confidence 1 1 11 122222111 1123347899999999999998776422 123449999999999
Q ss_pred chhHHHHHHhhhCCC
Q 003950 328 CPLALTVVGGSLCGK 342 (784)
Q Consensus 328 ~PLai~~~~~~L~~~ 342 (784)
+|.-+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999988654
No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=98.21 E-value=2.6e-05 Score=77.85 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=89.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhccc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI 238 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l 238 (784)
..+.|+|..|+|||.|++++++ .+... ..+++|++..+ +.... ..+.+ .+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~--~~~~~-~~~v~y~~~~~------~~~~~------------------~~~~~---~~ 95 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACL--RFEQR-GEPAVYLPLAE------LLDRG------------------PELLD---NL 95 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhC-CCcEEEeeHHH------HHhhh------------------HHHHH---hh
Confidence 6789999999999999999987 33322 23466776532 11110 01111 11
Q ss_pred CCCcEEEEEeCCCCCc---h---HHHhhhhc-cCCCceEEEecccccc-------------cCCCceeccCCCHHHHHHH
Q 003950 239 RPEAILLVLDDVWSGS---E---SLLQKFKF-QLPYYKILVTSRSVFP-------------QFGSGYDLKPLNDEAARTL 298 (784)
Q Consensus 239 ~~kr~LlVlDdv~~~~---~---~~~~~~~~-~~~gs~iivTtR~~~~-------------~~~~~~~l~~L~~~~a~~l 298 (784)
.+-. +||+||+.... . .+...+.. ...|..+|+|++.... ..+.++++++++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 67899996331 2 23333332 2346789999886421 1234788999999999999
Q ss_pred HHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHH
Q 003950 299 FRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVG 336 (784)
Q Consensus 299 f~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 336 (784)
+..++...+. .-.+++..-|++++.|..-++..+-
T Consensus 175 l~~ka~~~~~---~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 175 LQLRASRRGL---HLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9866644321 1237888899999998876665443
No 101
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.7e-05 Score=85.95 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=106.5
Q ss_pred CCCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEE-eCCCCCHHHHHHHHHH
Q 003950 135 PPPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVT-VSQTPNVKGIVQKVYQ 212 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~-~~~~~~~~~~~~~i~~ 212 (784)
.-..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.-.-...++. .-|.. .......-...+.+..
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~-~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDD-ADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCc-ccccccCCCCCCCCHHHHHHhc
Confidence 345789999888989888886665 45889999999999999998862111110100 00000 0001111111111111
Q ss_pred HcCCCC----CCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCch----HHHhhhhccCCCceEEEeccccc----
Q 003950 213 HKGYAV----PEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSE----SLLQKFKFQLPYYKILVTSRSVF---- 278 (784)
Q Consensus 213 ~l~~~~----~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~----~~~~~~~~~~~gs~iivTtR~~~---- 278 (784)
...... .......+....+.+.+ .-..+++-++|+|++..... .++..+....+.+.+|++|....
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 100000 00001111111222222 12245667889999976553 24455554555677776664331
Q ss_pred --ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 279 --PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 279 --~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
......+++.++++++..+.+...+-..+. .-.++.+..|++.++|.+--+.
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 111237889999999988888776643321 1247788999999999875333
No 102
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=98.19 E-value=1.7e-05 Score=71.44 Aligned_cols=111 Identities=40% Similarity=0.741 Sum_probs=102.4
Q ss_pred chhHHHHHHHHHHhhhhhHHHHHHhhhhcCCC-hhHHHHHHHHHHhhhHhhhhcCccc-ccccccchhHHHHHHHHHhHH
Q 003950 2 FKDLLEQLESTLQNSTPMIKEIEKLNQVLDLP-KHETDTLIEMMRRGEHLVHKCSRVK-WNCFKRYDYAKKIIKLDRSID 79 (784)
Q Consensus 2 ~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~-~~wl~~l~~~~~~aed~ld~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (784)
++.-+++|..+++.|.+++++++..+...+.- +..++++.+...+|+++++.|.... |+.++...+.+++..+...+.
T Consensus 32 fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~n~~kk~~y~~Ki~~le~~l~ 111 (147)
T PF05659_consen 32 FKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRRWNLYKKPRYARKIEELEESLR 111 (147)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHhHHHHHHHHHHHHH
Confidence 56789999999999999999999988876666 8999999999999999999999876 588899999999999999999
Q ss_pred hHhhccchhHhhhhhhHHHHHHHHHHHHHhhcc
Q 003950 80 TFFRTYIPLQQTRDNRVIMVDLKEVHMMVKRLS 112 (784)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (784)
+|+....+..+.++++++...+.++...++++.
T Consensus 112 ~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~~i~ 144 (147)
T PF05659_consen 112 RFIQVDLQLHQLRDIKELLAKMSEMNTKLDDIT 144 (147)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988764
No 103
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.18 E-value=2.6e-06 Score=84.84 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=60.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC--CCHHHHHHHHHHHcCCCCCCCCChH--HHHHHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT--PNVKGIVQKVYQHKGYAVPEFQTDE--DAINDLE 232 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~l~ 232 (784)
....++|+|++|+|||||++.++++.... +|+. +.|+.+... .+..++++.+...+-....+.+... .....+.
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv-~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEV-YLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCe-EEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999954433 7887 559987665 7899999998433221111111111 1111111
Q ss_pred HHhc--ccCCCcEEEEEeCCCC
Q 003950 233 RLLK--PIRPEAILLVLDDVWS 252 (784)
Q Consensus 233 ~~~~--~l~~kr~LlVlDdv~~ 252 (784)
...+ .-.++++++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 1111 1258999999999854
No 104
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.16 E-value=3.9e-05 Score=76.64 Aligned_cols=163 Identities=20% Similarity=0.227 Sum_probs=93.0
Q ss_pred CCCCCchhHHHHHHH-H-hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCC
Q 003950 139 TPGLDVPLQELKLEL-F-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY 216 (784)
Q Consensus 139 ~vGr~~~~~~l~~~L-~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 216 (784)
+.|...........+ . ....+.+.|+|..|+|||+||+.+++.. ..... .+.+++..+.. .. +
T Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~--~~~~i~~~~~~------~~----~-- 85 (227)
T PRK08903 21 VAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA-SYGGR--NARYLDAASPL------LA----F-- 85 (227)
T ss_pred ccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH-HhCCC--cEEEEehHHhH------HH----H--
Confidence 346655443333333 3 1345689999999999999999999832 12222 24455543211 00 0
Q ss_pred CCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhcc-CCCc-eEEEecccccc----------c
Q 003950 217 AVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQ-LPYY-KILVTSRSVFP----------Q 280 (784)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~-~~gs-~iivTtR~~~~----------~ 280 (784)
.. ..+.-+||+||+.....+ +...+... ..+. .+|+|++.... .
T Consensus 86 ----------------~~----~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 86 ----------------DF----DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred ----------------hh----cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 00 122347889999654322 22222221 2343 46666664310 1
Q ss_pred --CCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhh
Q 003950 281 --FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSL 339 (784)
Q Consensus 281 --~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L 339 (784)
.+..+.++++++++-..++.+.+-..+. .-.++....+++.+.|.+..+..+...|
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAERGL---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1347899999998777776654422221 2236788889999999998887665544
No 105
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.5e-05 Score=84.62 Aligned_cols=191 Identities=14% Similarity=0.137 Sum_probs=108.7
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-.+++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++. +.-.... -+..++.. ...+.+...-
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~--l~c~~~~--~~~pCg~C----~~C~~i~~~~ 83 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARS--LNCAQGP--TATPCGVC----ESCVALAPNG 83 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH--hccccCC--CCCccccc----HHHHHhhccc
Confidence 35789999999999999987664 55789999999999999998862 2110000 00000000 0011111000
Q ss_pred C-------CCCCCCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc---
Q 003950 215 G-------YAVPEFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF--- 278 (784)
Q Consensus 215 ~-------~~~~~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~--- 278 (784)
+ ..... ....+....+..... -..+++-++|+|++...... ++..+....+...+|++|.+..
T Consensus 84 ~~~~dvieidaas-~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 84 PGSIDVVELDAAS-HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred CCCceEEEecccc-ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0 00000 001111222222221 12356678999999776533 4555555455666666664431
Q ss_pred ---ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchh-HHHHHHhh
Q 003950 279 ---PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVVGGS 338 (784)
Q Consensus 279 ---~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~ 338 (784)
...+..+.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+- |+..+-.+
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 222457999999999998888876654432 1235677889999999874 44444443
No 106
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.15 E-value=4.2e-05 Score=87.11 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=41.1
Q ss_pred CCCCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 003950 134 DPPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDD 182 (784)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 182 (784)
..-+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3345689999999998888776667789999999999999999998743
No 107
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=0.00011 Score=81.04 Aligned_cols=176 Identities=13% Similarity=0.161 Sum_probs=108.0
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhccccc--ccc----------------cCCceEEEE
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQV--LGK----------------FKDNIFFVT 196 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~--~~~----------------f~~~~~wv~ 196 (784)
-..++|-+..++.+...+..+.. +++.++|+.|+||||+|+.+++..-- ... +...++.++
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 35689999888999998886664 56789999999999999988762100 000 111122222
Q ss_pred eCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEE
Q 003950 197 VSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILV 272 (784)
Q Consensus 197 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iiv 272 (784)
.+......+ ++.+++.... .-..+++-++|+|++...... ++..+....+.+++|+
T Consensus 93 aas~~gId~-IRelie~~~~-------------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 93 AASNRGIDD-IRELIEQTKY-------------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred cccccCHHH-HHHHHHHHhh-------------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 111111111 1111111100 111356678999999776643 5555555555677777
Q ss_pred eccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 273 TSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 273 TtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
+|.+.. ...+..+++.+++.++..+.+.+.+...+. .-.++.+..|++.++|.+--+..
T Consensus 153 ~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 153 ATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred EECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 776641 122347899999999998888776654432 12367889999999999854443
No 108
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=2.6e-07 Score=101.10 Aligned_cols=102 Identities=18% Similarity=0.250 Sum_probs=42.5
Q ss_pred CCCCCCCEEEecccCCCCc-c-ccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCC
Q 003950 569 GALSNLKRIRLEHVSLPSL-T-TVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVS 646 (784)
Q Consensus 569 ~~l~~L~~L~L~~n~l~~~-~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 646 (784)
+.+.+|..|++.+|.+..+ . ...+.+|+.|++++|.+..+.+.. .++.|+.|++++|.+.. + ..+..++.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~------~l~~L~~L~l~~N~i~~-~-~~~~~l~~ 163 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS------TLTLLKELNLSGNLISD-I-SGLESLKS 163 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh------hccchhhheeccCcchh-c-cCCccchh
Confidence 3444444444444444444 2 234444444444444444433322 23334555555443322 1 11333445
Q ss_pred CcEEEccCCCCCCCCchh-ccCCCCCCEEEeecC
Q 003950 647 IKKLRITNCHKLSALPEG-IGKLVNLQMLTLASC 679 (784)
Q Consensus 647 L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~ 679 (784)
|+.+++++|.+.. +... +..+.+|+.+.+.+|
T Consensus 164 L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 164 LKLLDLSYNRIVD-IENDELSELISLEELDLGGN 196 (414)
T ss_pred hhcccCCcchhhh-hhhhhhhhccchHHHhccCC
Confidence 5555555543222 2111 244445555555443
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=6.2e-05 Score=83.88 Aligned_cols=192 Identities=15% Similarity=0.146 Sum_probs=109.8
Q ss_pred CCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 137 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
.+++|-+..++.|..++..+. ...+.++|+.|+||||+|+.+.+...-...... ..++.-...+.+.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~--------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG--------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC--------CCCcccHHHHHHhcCCC
Confidence 567898888888888887655 577889999999999999999873211000000 00011111111111100
Q ss_pred CCCCCC----CChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------c
Q 003950 216 YAVPEF----QTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------P 279 (784)
Q Consensus 216 ~~~~~~----~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~ 279 (784)
...... ....+....+.+.+. -..+++-+||+|++...... ++..+....+...+|++|.... .
T Consensus 88 pDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred CceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH
Confidence 000000 001111222322221 22466779999999776533 4444443334566666665431 1
Q ss_pred cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch-hHHHHHHhhh
Q 003950 280 QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP-LALTVVGGSL 339 (784)
Q Consensus 280 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~L 339 (784)
.....+++++++.++..+.+...+...+. .-..+.++.|++.++|.+ .|+..+...+
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22347899999999999888877654432 124678899999999965 6777766544
No 110
>PRK09087 hypothetical protein; Validated
Probab=98.11 E-value=6.4e-05 Score=74.33 Aligned_cols=135 Identities=15% Similarity=0.142 Sum_probs=86.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 237 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 237 (784)
.+.+.|+|.+|+|||+|++.+++.. ++.+++.. .+...+...+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~--------~~~~i~~~------~~~~~~~~~~----------------------- 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS--------DALLIHPN------EIGSDAANAA----------------------- 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc--------CCEEecHH------HcchHHHHhh-----------------------
Confidence 4679999999999999999888631 12244331 1111111110
Q ss_pred cCCCcEEEEEeCCCCCc---hHHHhhhhcc-CCCceEEEeccccc-------------ccCCCceeccCCCHHHHHHHHH
Q 003950 238 IRPEAILLVLDDVWSGS---ESLLQKFKFQ-LPYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAARTLFR 300 (784)
Q Consensus 238 l~~kr~LlVlDdv~~~~---~~~~~~~~~~-~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~a~~lf~ 300 (784)
.+ -+|++||+.... +.+...+... ..|..||+|++... ...+.++++++++.++-.+++.
T Consensus 87 -~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 87 -AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred -hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 11 278889995432 3344444322 34778999988541 1234589999999999999999
Q ss_pred HHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 301 YSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
+++...+. .-.+++..-|++++.|..-++..+
T Consensus 164 ~~~~~~~~---~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQL---YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcCC---CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 88754322 223788899999999888776643
No 111
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=4.9e-05 Score=88.45 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=105.7
Q ss_pred CCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhccccccccc---CCceEEEEeCCCCCHHHHHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKF---KDNIFFVTVSQTPNVKGIVQKVYQ 212 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~~wv~~~~~~~~~~~~~~i~~ 212 (784)
..+||.+..++.|..++..+.. +.+.++|+.|+||||+|+.+.+...-.... +|+. -.-.+.|..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~-----------C~sC~~~~~ 83 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE-----------CDSCVALAP 83 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc-----------cHHHHHHHc
Confidence 5679999999999999987665 568899999999999999987632110100 1100 000111110
Q ss_pred H-------cCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc-
Q 003950 213 H-------KGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF- 278 (784)
Q Consensus 213 ~-------l~~~~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~- 278 (784)
. +..........++. ..+.+.. .-..++.-++|||++...... ++..+......+.+|++|.+..
T Consensus 84 g~~~~~dv~eidaas~~~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCCCCCcEEEecccccCCHHHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 0 00000000011111 2222211 223566778999999876643 5555555555677776664431
Q ss_pred -----ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 279 -----PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 279 -----~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
...+..|++..++.++..+.+.+.+-..+. .-..+....|++.++|.+..+.
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 222447999999999988888776533332 1235667889999999884333
No 112
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.11 E-value=3.9e-06 Score=88.02 Aligned_cols=137 Identities=22% Similarity=0.368 Sum_probs=85.6
Q ss_pred cCCCCCCCEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCC
Q 003950 568 FGALSNLKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSI 647 (784)
Q Consensus 568 l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 647 (784)
+..+.++..|++++|.++.++ .-..+|+.|.+.+|......+.. -.++|+.|++++|..+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~------LP~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGS------IPEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCch------hhhhhhheEccCccccccccc------cc
Confidence 345688999999999888885 33457999999987553332221 235899999999976666776 46
Q ss_pred cEEEccCCC--CCCCCchhccCCCCCCEEEeecCCCC--CCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEe
Q 003950 648 KKLRITNCH--KLSALPEGIGKLVNLQMLTLASCTDL--SALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLC 723 (784)
Q Consensus 648 ~~L~L~~~~--~~~~lp~~l~~l~~L~~L~L~~~~~~--~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 723 (784)
+.|++.++. .++.+|. +|+.|.+.+++.. ..+|.. -.++|++|++++|... .+|..+. .+|+.|+
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 677776533 2455554 3556665433211 111211 1146888888877644 3443333 4788888
Q ss_pred ccCCC
Q 003950 724 LKGCS 728 (784)
Q Consensus 724 l~~n~ 728 (784)
++.|.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 77663
No 113
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=3.9e-05 Score=86.34 Aligned_cols=194 Identities=16% Similarity=0.166 Sum_probs=110.8
Q ss_pred CCCCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccccCC-ceEEEEeCCCCCHHHHHHHHH
Q 003950 134 DPPPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKD-NIFFVTVSQTPNVKGIVQKVY 211 (784)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~~wv~~~~~~~~~~~~~~i~ 211 (784)
..-..++|.+..++.|..++..+. ...+.++|+.|+||||+|+.+++.-.-...... +.-+-.+ ..-.-.+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c----g~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC----GVGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC----cccHHHHHHh
Confidence 334678999999999999988665 457899999999999999999873111110000 0000000 0011112222
Q ss_pred HHcCCCCC----CCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEecccc-c--
Q 003950 212 QHKGYAVP----EFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSV-F-- 278 (784)
Q Consensus 212 ~~l~~~~~----~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~-~-- 278 (784)
..-..... ......+.+..+.... .-..+++-++|+|++...... ++..+....+++.+|++|... .
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 11110000 0001111111222212 112456678999999766532 555555555667777666332 1
Q ss_pred ---ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 279 ---PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 279 ---~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
...+..+.+..++.++....+.+.+...+. .-.++....|++.++|.+.-+..
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 122347899999999999998887654432 12357889999999999865543
No 114
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.09 E-value=0.00016 Score=71.23 Aligned_cols=176 Identities=17% Similarity=0.243 Sum_probs=100.7
Q ss_pred CCCCCCCCchh-HHHHHHHH-hC--CcEEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCCCCHHHHHHHH
Q 003950 136 PPVTPGLDVPL-QELKLELF-KD--GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 136 ~~~~vGr~~~~-~~l~~~L~-~~--~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i 210 (784)
+..++|-..+. -.....+. .. ....+.|+|..|+|||.|.+++++ .+.... ..++++++ ..++...+
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~ 79 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREF 79 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHH
Confidence 34556754432 23333343 22 245689999999999999999998 555443 34566665 35566666
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch------HHHhhhhc-cCCCceEEEeccccccc---
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE------SLLQKFKF-QLPYYKILVTSRSVFPQ--- 280 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~------~~~~~~~~-~~~gs~iivTtR~~~~~--- 280 (784)
...+... ....+...+ + .-=+|++||+..... .+..-+.. ...|-+||+|++.....
T Consensus 80 ~~~~~~~---------~~~~~~~~~---~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 80 ADALRDG---------EIEEFKDRL---R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHTT---------SHHHHHHHH---C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred HHHHHcc---------cchhhhhhh---h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 5554321 112222222 2 345889999965431 12222221 23477999999765221
Q ss_pred ----------CCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 281 ----------FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 281 ----------~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
.+.++++.+++.++-.+++.+.+...+-. -.++++.-|++.+.+..-.+..+
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE---LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHHH
Confidence 23379999999999999999888654432 23678888888888776655543
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=9.2e-05 Score=83.86 Aligned_cols=186 Identities=16% Similarity=0.187 Sum_probs=104.6
Q ss_pred CCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccccc-ccCCceEEEEeCCCCCHHHHHHHHHH-
Q 003950 136 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIVQKVYQ- 212 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~i~~- 212 (784)
-..++|.+..++.+..++..++ .+.+.++|+.|+||||+|+.++.. +-. +... . +..+ ........
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~--LnC~~~~~-~-~~pC-------~~C~~~~~~ 85 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANA--LNCSHKTD-L-LEPC-------QECIENVNN 85 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH--hcccccCC-C-CCch-------hHHHHhhcC
Confidence 3567999999999999998655 566789999999999999998762 210 1000 0 0000 00000000
Q ss_pred H---cCCCCCCCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEecccc-c----
Q 003950 213 H---KGYAVPEFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSV-F---- 278 (784)
Q Consensus 213 ~---l~~~~~~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~-~---- 278 (784)
. +..... .....+..+.+.+.+. -..+++-++|+|++...... ++..+....+.+.+|++|... .
T Consensus 86 ~~Dvieidaa-sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 86 SLDIIEMDAA-SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCcEEEEecc-ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0 000000 0001111222222221 12467779999999766532 444444444455655555433 1
Q ss_pred -ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchh-HHHHHH
Q 003950 279 -PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVVG 336 (784)
Q Consensus 279 -~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 336 (784)
...+..+.+.+++.++..+.+...+...+. .-..+.+..|++.++|.+- |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222348999999999998888776543332 1235678899999999774 444433
No 116
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00012 Score=80.79 Aligned_cols=171 Identities=15% Similarity=0.180 Sum_probs=104.7
Q ss_pred CCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccccc----c-cCCc---------------eEEE
Q 003950 137 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG----K-FKDN---------------IFFV 195 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~-f~~~---------------~~wv 195 (784)
..++|-+.-+..+..++..+. .+.+.++|+.|+||||+|+.++.. +.. . .+++ ++++
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~--L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKV--LNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH--hcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 567899999999999998655 456778999999999999998762 210 0 1111 1122
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCce
Q 003950 196 TVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYK 269 (784)
Q Consensus 196 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~ 269 (784)
+.+... ..+....+.... .-..+++-++|+|+++..... ++..+....+...
T Consensus 94 daas~~----------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 94 DAASNR----------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred eCccCC----------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 111111 111122222222 122467779999999766532 4444444444566
Q ss_pred EEEecccc------cccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 270 ILVTSRSV------FPQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 270 iivTtR~~------~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
+|++|... .......+.+.+++.++....+...+-..+. .-..+.+..|++.++|.+-.+..
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 66555332 1222347889999999988888876644332 12357788899999998765443
No 117
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00012 Score=83.33 Aligned_cols=189 Identities=16% Similarity=0.164 Sum_probs=109.5
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-..++|-+..++.|..++..+.. ..+.++|+.|+||||+|+.+++. +...... .-....+.-...+.+....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~~~-----~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKA--VNCTTND-----PKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCC-----CCCCCCccCHHHHHHhcCC
Confidence 35789999999999888886554 56789999999999999999862 2110000 0000111122233333221
Q ss_pred CCCC----CCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------
Q 003950 215 GYAV----PEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 278 (784)
Q Consensus 215 ~~~~----~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 278 (784)
+... .......+....+...+ ....+++-++|+|++...... ++..+....+.+.+|++|.+..
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1110 00001111122222222 112456779999999765532 4444444445667777665431
Q ss_pred ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 279 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 279 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
......+.+..++.++....+.+.+...+. .-..+.+..|++.++|.+..+..
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl---~i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGI---NLEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 122347888999999988888877654432 12367788999999999865543
No 118
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.08 E-value=7.3e-06 Score=85.08 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=63.8
Q ss_pred HHHHHHH-hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC--CHHHHHHHHHHHcCCCCCCCCCh
Q 003950 148 ELKLELF-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP--NVKGIVQKVYQHKGYAVPEFQTD 224 (784)
Q Consensus 148 ~l~~~L~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~ 224 (784)
++++.+. -..-+..+|+|++|+||||||+.+|++.... +|+. +.|+.+.+.. +..++++.+...+-....+.+..
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv-~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEV-HLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCe-EEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 4445554 2345778999999999999999999954433 7888 5699888776 67778877763221111111111
Q ss_pred H------HHHHHHHHHhcccCCCcEEEEEeCCCC
Q 003950 225 E------DAINDLERLLKPIRPEAILLVLDDVWS 252 (784)
Q Consensus 225 ~------~~~~~l~~~~~~l~~kr~LlVlDdv~~ 252 (784)
. ...+..+.+. -.++.++|++|++..
T Consensus 236 ~~~~~a~~~ie~Ae~~~--e~G~dVlL~iDsItR 267 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLV--EHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHH--HcCCCEEEEEEChHH
Confidence 1 1111222222 268999999999954
No 119
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.07 E-value=0.00016 Score=72.69 Aligned_cols=190 Identities=15% Similarity=0.193 Sum_probs=116.2
Q ss_pred CCCCCch---hHHHHHHHH---hCCcEEEEEEcCCCCcHHHHHHHHhcccccc-----cccCCceEEEEeCCCCCHHHHH
Q 003950 139 TPGLDVP---LQELKLELF---KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVL-----GKFKDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 139 ~vGr~~~---~~~l~~~L~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-----~~f~~~~~wv~~~~~~~~~~~~ 207 (784)
.||-... ++.+.+++. ....+-+.|+|.+|+|||++++++....-.. ..++ |+.+.....++...+.
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~P--Vv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIP--VVYVQMPPEPDERRFY 113 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCcccc--EEEEecCCCCChHHHH
Confidence 3554433 344444454 2345679999999999999999998632111 1222 5677888899999999
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc-------hHHHhhhhc---cCCCceEEEecccc
Q 003950 208 QKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS-------ESLLQKFKF---QLPYYKILVTSRSV 277 (784)
Q Consensus 208 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-------~~~~~~~~~---~~~gs~iivTtR~~ 277 (784)
..|+.+++.+................+++. -+--+||+|++.+.- ..++..++. ...=+-|.|-|++.
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~--~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRR--LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHH--cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 999999998876555555544555555543 344588999996632 113333333 33346777878765
Q ss_pred ccc--C-------CCceeccCCCHH-HHHHHHHHHh--ccCCCCCCCcCHHHHHHHHHHcCCchhHH
Q 003950 278 FPQ--F-------GSGYDLKPLNDE-AARTLFRYSA--NLQDGNSYIPDENLVNKILRACKGCPLAL 332 (784)
Q Consensus 278 ~~~--~-------~~~~~l~~L~~~-~a~~lf~~~a--~~~~~~~~~~~~~~~~~i~~~~~g~PLai 332 (784)
... . -.++.++.-..+ +...|+.... ..-..+..-..+++++.|...++|+.=-+
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 211 1 114555544443 4555554322 22223233445889999999999987433
No 120
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.05 E-value=1e-05 Score=86.81 Aligned_cols=165 Identities=14% Similarity=0.186 Sum_probs=97.0
Q ss_pred CCCCCCCCchhHHHHHHHHh-------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCC
Q 003950 136 PPVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN 202 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~ 202 (784)
...+.|++..+++|.+.+.. ...+-+.++|++|+|||++|+++++ .....| +.+.
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~------~~v~---- 188 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF------IRVV---- 188 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE------Eecc----
Confidence 35679999999999888751 1245699999999999999999998 333333 2221
Q ss_pred HHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCc-----------h----HHHhh---hhc
Q 003950 203 VKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGS-----------E----SLLQK---FKF 263 (784)
Q Consensus 203 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~-----------~----~~~~~---~~~ 263 (784)
..++.... ++ .....++..++.. ...+.+|++||++... . .+... +..
T Consensus 189 ~~~l~~~~---~g----------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 189 GSELVRKY---IG----------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred hHHHHHHh---hh----------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 11111111 00 1111222333111 3567899999986421 0 11111 111
Q ss_pred --cCCCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch
Q 003950 264 --QLPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP 329 (784)
Q Consensus 264 --~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 329 (784)
...+.+||.||.... . .....+.++..+.++..++|..++........ .....+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~----~~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED----VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc----CCHHHHHHHcCCCC
Confidence 124677888887541 1 12347889999999999999887755432111 12466777777753
No 121
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=6.9e-05 Score=84.47 Aligned_cols=196 Identities=13% Similarity=0.130 Sum_probs=106.4
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEE-eCCCCCHHHHHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVT-VSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~-~~~~~~~~~~~~~i~~~ 213 (784)
-..++|-+..+..|..++..+.. ..+.++|+.|+||||+|+.+.+.-.-....+. .-|.. +.+....-...+.+...
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~-~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDD-PVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCc-cccccccCCCCccCHHHHHHhcc
Confidence 35789999989999888886654 56889999999999999988763111111100 00110 00111111111111111
Q ss_pred cCCCC-----CCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEecccc------
Q 003950 214 KGYAV-----PEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSV------ 277 (784)
Q Consensus 214 l~~~~-----~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~------ 277 (784)
-.... ......++..+.+..+. .-..+++-++|+|+++..... ++..+....+.+.+|++|...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 00000 00001112221111111 112456668899999766532 444444444456666555433
Q ss_pred cccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchh-HHHHH
Q 003950 278 FPQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVV 335 (784)
Q Consensus 278 ~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 335 (784)
....+..+++.+++.++....+.+.+...+. .-..+.+..|++.++|..- |+..+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGI---QIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 1223447999999999988888776543332 1246788999999999664 44433
No 122
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00015 Score=79.33 Aligned_cols=175 Identities=17% Similarity=0.174 Sum_probs=104.8
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhccccccc----ccCC---------------ceEEE
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLG----KFKD---------------NIFFV 195 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~---------------~~~wv 195 (784)
-..++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.+.+...-.. .-++ ..+++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i 95 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEI 95 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEe
Confidence 35789999999999999986664 6688999999999999999876211000 0000 01111
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCce
Q 003950 196 TVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYK 269 (784)
Q Consensus 196 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~ 269 (784)
.-...... +....+.+.+ ....+++-++|+|++...... ++..+....+.+.
T Consensus 96 ~g~~~~gi----------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 96 DGASHRGI----------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred eccccCCH----------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 10001111 1111122222 112366778999998655432 4444444444666
Q ss_pred EEEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchh-HHHHH
Q 003950 270 ILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVV 335 (784)
Q Consensus 270 iivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 335 (784)
+|++|.... ......+++.++++++....+...+-..+. .-.++.+..|++.++|.+- |+..+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 776664431 222347899999999988888776643332 1246788999999999764 44444
No 123
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.00011 Score=76.71 Aligned_cols=171 Identities=16% Similarity=0.208 Sum_probs=108.9
Q ss_pred CCCCCCCCCCchhHHHHHHHH----hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHH
Q 003950 134 DPPPVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 209 (784)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 209 (784)
.++..++||+.++..+.+++. ....+-+.|.|-+|.|||.+...++.+..-...=.. ++++.+..-....+++..
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~-~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPV-TVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccce-eEEEeeccccchHHHHHH
Confidence 456778999999999999987 345678999999999999999999985322211122 347777666778888888
Q ss_pred HHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc----hHHHhhhhc-cCCCceEEEecccc-------
Q 003950 210 VYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS----ESLLQKFKF-QLPYYKILVTSRSV------- 277 (784)
Q Consensus 210 i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----~~~~~~~~~-~~~gs~iivTtR~~------- 277 (784)
|...+...........+..+.+...... ...-+|+|+|.++... ..+...|.| ..+++++|+.---.
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q-~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQ-SKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhc-ccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 8887722221111222333333333321 1246899999985432 123344443 35677766543211
Q ss_pred ------c--ccCCCceeccCCCHHHHHHHHHHHhccC
Q 003950 278 ------F--PQFGSGYDLKPLNDEAARTLFRYSANLQ 306 (784)
Q Consensus 278 ------~--~~~~~~~~l~~L~~~~a~~lf~~~a~~~ 306 (784)
. .-....+..+|.+.++-.++|..+....
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 0 1122367889999999999999887443
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.02 E-value=8.4e-05 Score=78.45 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=83.6
Q ss_pred CCCCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 003950 134 DPPPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQ 212 (784)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 212 (784)
..-..++|.+...+.+..++..+. ..++.++|++|+||||+|+.+++ ... .....++.+. .. .+.++..+.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~--~~~----~~~~~i~~~~-~~-~~~i~~~l~ 89 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCN--EVG----AEVLFVNGSD-CR-IDFVRNRLT 89 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHH--HhC----ccceEeccCc-cc-HHHHHHHHH
Confidence 334678999999999999988655 46777799999999999999987 322 1233455444 22 111111111
Q ss_pred HcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCC-chH---HHhh-hhccCCCceEEEeccccc------ccC
Q 003950 213 HKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSG-SES---LLQK-FKFQLPYYKILVTSRSVF------PQF 281 (784)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~-~~~---~~~~-~~~~~~gs~iivTtR~~~------~~~ 281 (784)
.+. .. ..+.+.+-+||+||+... ... .+.. +....+++++|+||.... ...
T Consensus 90 ~~~-----------------~~-~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 90 RFA-----------------ST-VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHH-----------------Hh-hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 110 00 011244568899999765 221 2222 333345778888886541 112
Q ss_pred CCceeccCCCHHHHHHHHH
Q 003950 282 GSGYDLKPLNDEAARTLFR 300 (784)
Q Consensus 282 ~~~~~l~~L~~~~a~~lf~ 300 (784)
...+.++..+.++..+++.
T Consensus 152 ~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred ceEEEeCCCCHHHHHHHHH
Confidence 2356677777777766554
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.02 E-value=0.00045 Score=75.69 Aligned_cols=181 Identities=15% Similarity=0.139 Sum_probs=107.8
Q ss_pred CCCCCCCCch--hHHHHHHHHhCC--cEEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCCCCHHHHHHHH
Q 003950 136 PPVTPGLDVP--LQELKLELFKDG--RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 136 ~~~~vGr~~~--~~~l~~~L~~~~--~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i 210 (784)
+..++|.... .....++....+ ...+.|+|..|+|||+|++++.+ .+.... ..++++++ ..++...+
T Consensus 115 dnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~ 186 (450)
T PRK14087 115 ENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKA 186 (450)
T ss_pred hcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHH
Confidence 3456676543 222222222222 35689999999999999999988 443322 33344444 35566666
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc--h----HHHhhhhc-cCCCceEEEeccccc-----
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS--E----SLLQKFKF-QLPYYKILVTSRSVF----- 278 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--~----~~~~~~~~-~~~gs~iivTtR~~~----- 278 (784)
...+... .. .+....+.++ +.-+||+||+.... + .+..-+.. ...|..||+|+....
T Consensus 187 ~~~l~~~-------~~---~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~ 255 (450)
T PRK14087 187 VDILQKT-------HK---EIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNG 255 (450)
T ss_pred HHHHHHh-------hh---HHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhh
Confidence 6665421 01 1222222222 34588999996543 2 12222222 234557888876541
Q ss_pred --------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHH
Q 003950 279 --------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVG 336 (784)
Q Consensus 279 --------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 336 (784)
...+-++.+++++.++-.+++.+++-..+.. ..-.+++..-|++.+.|.|-.+.-+.
T Consensus 256 l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 256 FDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred ccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 1124478899999999999999887543210 12247889999999999997776544
No 126
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00066 Score=70.61 Aligned_cols=190 Identities=15% Similarity=0.164 Sum_probs=110.2
Q ss_pred CCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccc-------------ccccCCceEEEEeCCCCC
Q 003950 137 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQV-------------LGKFKDNIFFVTVSQTPN 202 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~-------------~~~f~~~~~wv~~~~~~~ 202 (784)
..++|.+..++.+...+..+. .+...++|+.|+||+++|..+.+.--- ...+++ ..|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 357899999999999998776 489999999999999999887652100 122344 34553210000
Q ss_pred HHHHHHHHHHHcCCCC-CCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEecc
Q 003950 203 VKGIVQKVYQHKGYAV-PEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSR 275 (784)
Q Consensus 203 ~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR 275 (784)
...+-..-++..+... ....-..+....+.+.+ .-..+++-++|+|++...... ++..+.... .+.+|++|.
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 0000011111111000 00011122233444444 234577889999998766532 555554444 556666665
Q ss_pred ccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 276 SVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 276 ~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
+.. ......+.+.+++.++..+.+........ .......++..++|.|..+..
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 541 22334899999999999999987642111 112246889999999976654
No 127
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.02 E-value=8e-05 Score=75.66 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=101.9
Q ss_pred CCCCCCCCchhHHHHHHHHhCC---cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELFKDG---RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQ 212 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~---~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 212 (784)
.+.+.+|+.++..+..++.+.. +..|.|+|-+|.|||.+.+++++.. ...-+|+++-+.++...++.+|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHhccHHHHHHHHHH
Confidence 4678999999999988887443 4567899999999999999999843 222349999999999999999999
Q ss_pred HcCC-CCCCCCChH--HHHHHHHHHh-c--cc--CCCcEEEEEeCCCCCch---HHHhhhh---c-cCCCceEEEecccc
Q 003950 213 HKGY-AVPEFQTDE--DAINDLERLL-K--PI--RPEAILLVLDDVWSGSE---SLLQKFK---F-QLPYYKILVTSRSV 277 (784)
Q Consensus 213 ~l~~-~~~~~~~~~--~~~~~l~~~~-~--~l--~~kr~LlVlDdv~~~~~---~~~~~~~---~-~~~gs~iivTtR~~ 277 (784)
+.+. +.+...... +........+ + .. +++.++||||++....+ .++..+. . .....-+|+++-..
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 9852 222211111 1111111222 1 11 25689999999865432 2222221 1 11224455555443
Q ss_pred c-----ccCCC----ceeccCCCHHHHHHHHHH
Q 003950 278 F-----PQFGS----GYDLKPLNDEAARTLFRY 301 (784)
Q Consensus 278 ~-----~~~~~----~~~l~~L~~~~a~~lf~~ 301 (784)
. ...+. ++..+.-+.+|..+++.+
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 1 11222 567788899999888865
No 128
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.00 E-value=3.7e-05 Score=82.91 Aligned_cols=163 Identities=14% Similarity=0.194 Sum_probs=93.4
Q ss_pred CCCCCCCchhHHHHHHHHh-------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
..+.|+++.++++.+.+.. ...+-|.++|++|+|||++|+++++ +.... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~------~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT------FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC------EEEeeh----
Confidence 4678999999999887641 2356799999999999999999998 33222 333311
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcc-cCCCcEEEEEeCCCCC-----------chH----HHhhh---hc-
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP-IRPEAILLVLDDVWSG-----------SES----LLQKF---KF- 263 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~-l~~kr~LlVlDdv~~~-----------~~~----~~~~~---~~- 263 (784)
.++. ....+ .....++.+++. -...+.+|+|||++.. ... +...+ ..
T Consensus 199 ~~l~----~~~~g---------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 199 SELV----QKFIG---------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred HHHh----Hhhcc---------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 1111 11100 011122333311 1356789999998642 111 11111 11
Q ss_pred -cCCCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 264 -QLPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 264 -~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
...+..||.||.... . .....+.+++.+.++-.++|..+.......... ....+++.+.|.
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~----~~~~la~~t~g~ 336 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV----DLEELAELTEGA 336 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC----CHHHHHHHcCCC
Confidence 112456777776531 1 223478999999999999998876443321111 245566666664
No 129
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=9.9e-08 Score=92.62 Aligned_cols=193 Identities=21% Similarity=0.289 Sum_probs=122.4
Q ss_pred CCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc---cccccccCceeeeeeccccccccCccccccccCCc
Q 003950 546 KLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPN 622 (784)
Q Consensus 546 ~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 622 (784)
.|++|++++..+.-+.+. ..+..|.+|+.|.+.++.+.+- .+..-.+|+.|+++.|+.... ....-++.+++.
T Consensus 186 Rlq~lDLS~s~it~stl~--~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~--n~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH--GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE--NALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHH--HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch--hHHHHHHHhhhh
Confidence 477777776322111111 1256677888888888888765 455677899999988854221 111223447888
Q ss_pred eEEEEEeCCCCCCCCCc-ccCC-CCCCcEEEccCCCCC---CCCchhccCCCCCCEEEeecCCCCCC-CcccccCCCCCC
Q 003950 623 LLEIDIDYCNDLIELPD-GLCD-IVSIKKLRITNCHKL---SALPEGIGKLVNLQMLTLASCTDLSA-LPDTIGNLSNLN 696 (784)
Q Consensus 623 L~~L~L~~~~~~~~lp~-~i~~-l~~L~~L~L~~~~~~---~~lp~~l~~l~~L~~L~L~~~~~~~~-~p~~~~~l~~L~ 696 (784)
|..|+|+.|....+.-. .+.+ -.+|..|+|+||... ..+..-..++++|.+|||+.|..++. .-..+..++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 99999999976543211 1111 247889999987421 22222345789999999999876654 224566788999
Q ss_pred EEeccCCCCCCccch---hhhCCCCCCEEeccCCCC-CCcChhhhCCCCCCE
Q 003950 697 FLDISECLNIQELPE---RIGELCSLKTLCLKGCSM-FELPSSILNLENLEV 744 (784)
Q Consensus 697 ~L~l~~n~~~~~~p~---~l~~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~ 744 (784)
+|.++.|..+ +|. .+...|+|.+|++.+|-= +.+.-....+++|+.
T Consensus 342 ~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 342 HLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred eeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 9999998643 343 457889999999988752 222222344555543
No 130
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.0003 Score=79.90 Aligned_cols=171 Identities=15% Similarity=0.196 Sum_probs=105.1
Q ss_pred CCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhccccc---------------------ccccCCceEE
Q 003950 137 PVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQV---------------------LGKFKDNIFF 194 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~---------------------~~~f~~~~~w 194 (784)
..++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+.....- ..+|+ +..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n--~~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN--IHE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc--eEE
Confidence 5679999999999999987664 56889999999999999988762110 01222 112
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceE
Q 003950 195 VTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKI 270 (784)
Q Consensus 195 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~i 270 (784)
++.++.....++ +.+++++.. .-..+++-++|+|++...... ++..+....+++.+
T Consensus 95 ld~~~~~~vd~I-r~li~~~~~-------------------~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 95 LDAASNNSVDDI-RNLIEQVRI-------------------PPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred ecccccCCHHHH-HHHHHHHhh-------------------CcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 222222112111 122221111 112355668899999776543 44444444455666
Q ss_pred EEecccc------cccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHH
Q 003950 271 LVTSRSV------FPQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 332 (784)
Q Consensus 271 ivTtR~~------~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 332 (784)
|++|... ....+.++++.+++.++....+...+...+. .-..+.+..|++.++|..--+
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 6655433 1223448999999999999888877654432 123567899999999977533
No 131
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.95 E-value=6.1e-05 Score=74.36 Aligned_cols=178 Identities=16% Similarity=0.132 Sum_probs=111.4
Q ss_pred CCCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 135 PPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
.-..++|-+..+..+...+.....+....+|++|.|||+-|++++...--.+.|++++.=.++|...... +.+.=.+.+
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Kik~f 112 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKIKNF 112 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhhcCH
Confidence 3456789999999999998887789999999999999999998887322245688877655665543322 111100000
Q ss_pred CCCCCCCCChHHHHHHHHHHhccc---CCCc-EEEEEeCCCCCchHHHhh----hhccCCCceEEEeccccc------cc
Q 003950 215 GYAVPEFQTDEDAINDLERLLKPI---RPEA-ILLVLDDVWSGSESLLQK----FKFQLPYYKILVTSRSVF------PQ 280 (784)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~l---~~kr-~LlVlDdv~~~~~~~~~~----~~~~~~gs~iivTtR~~~------~~ 280 (784)
..+....... ..++ -.||||+++.....-+.+ +......++.|+.+.... ..
T Consensus 113 --------------akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 113 --------------AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred --------------HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0000000000 1223 478899997765432333 333344566555544431 11
Q ss_pred CCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchh
Q 003950 281 FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL 330 (784)
Q Consensus 281 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL 330 (784)
-..-+..++|.+++...-+...+-.++.. -..+..+.|++.++|---
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~---~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVD---IDDDALKLIAKISDGDLR 225 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCcHH
Confidence 22368899999999999888888665542 246788999999999543
No 132
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00026 Score=79.41 Aligned_cols=184 Identities=14% Similarity=0.191 Sum_probs=106.3
Q ss_pred CCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccccc---ccCCceEEEEeCCCCCHHHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG---KFKDNIFFVTVSQTPNVKGIVQKVY 211 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~~wv~~~~~~~~~~~~~~i~ 211 (784)
-..++|-+..++.+..++..+. .+.+.++|+.|+||||+|+.+++..--.. .++++ ...+- +.+.
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~-------~C~~C----~~i~ 83 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG-------ECSSC----KSID 83 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc-------cchHH----HHHH
Confidence 3578999999999999998655 45688999999999999999987311000 11111 00000 1111
Q ss_pred HHcCCCC---CCC-CChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc---
Q 003950 212 QHKGYAV---PEF-QTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF--- 278 (784)
Q Consensus 212 ~~l~~~~---~~~-~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~--- 278 (784)
..-.... ... ....+....+.+.. .-..+++-++|+|++...... ++..+....+.+.+|++|....
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 1000000 000 01111111222111 122466778999999776543 4444444445566766664431
Q ss_pred ---ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 279 ---PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 279 ---~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
......+++.+++.++..+.+.+.+...+. .-.++.+..|++.++|.+-.+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 122336899999999998888877654432 1246788889999999885444
No 133
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=1.1e-07 Score=102.74 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=63.6
Q ss_pred ceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcc-cccCCCCCCEEec
Q 003950 622 NLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPD-TIGNLSNLNFLDI 700 (784)
Q Consensus 622 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~l 700 (784)
.|.+.+.++|. +..+..++.-++.|+.|+|++|.+... . .+..+++|++|||++|.+ ..+|. +...+. |..|.+
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchh-ccccccchhhhh-heeeee
Confidence 34445555542 223334455555666666666554332 1 455666666666666443 23332 222332 666666
Q ss_pred cCCCCCCccchhhhCCCCCCEEeccCCCCCCcC--hhhhCCCCCCEEeCCCCchh
Q 003950 701 SECLNIQELPERIGELCSLKTLCLKGCSMFELP--SSILNLENLEVVKCDEETAY 753 (784)
Q Consensus 701 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~~ 753 (784)
++|...+ + .++.+|.+|+.||+++|-|.... .-++.|..|+.|++.+|...
T Consensus 240 rnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6653322 2 14556666666666666654211 22455566666666666553
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.89 E-value=9.1e-05 Score=86.79 Aligned_cols=148 Identities=12% Similarity=0.125 Sum_probs=85.9
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccccccc-----cc-CCceEEEEeCCCCCHHHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-----KF-KDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-----~f-~~~~~wv~~~~~~~~~~~~~~i 210 (784)
+.++||+.+++++++.|......-+.++|++|+|||++|+.++. ++.. .+ ..+++.+++ .. +
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~--~~~~~~~p~~l~~~~~~~~~~------~~----l 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLAL--RIAEGKVPENLKNAKIYSLDM------GS----L 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH--HHHhCCCchhhcCCeEEEecH------HH----H
Confidence 46899999999999999866666678999999999999999987 3321 12 232333321 11 1
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCc---------hHHHhhhhcc-CCC-ceEE-Eecccc
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGS---------ESLLQKFKFQ-LPY-YKIL-VTSRSV 277 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~---------~~~~~~~~~~-~~g-s~ii-vTtR~~ 277 (784)
..... ...+..+.++.+++.+ ..++.+|++|+++... ......+.+. ..| -++| .||...
T Consensus 250 ~a~~~-------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 250 LAGTK-------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEE 322 (731)
T ss_pred hhhcc-------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHH
Confidence 11000 0112234455555333 3467899999985321 1111112221 233 2444 444421
Q ss_pred ----------cccCCCceeccCCCHHHHHHHHHHHh
Q 003950 278 ----------FPQFGSGYDLKPLNDEAARTLFRYSA 303 (784)
Q Consensus 278 ----------~~~~~~~~~l~~L~~~~a~~lf~~~a 303 (784)
....-..+.+++++.++..+++....
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 01112378899999999999988654
No 135
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.89 E-value=9.9e-05 Score=87.12 Aligned_cols=173 Identities=13% Similarity=0.154 Sum_probs=99.6
Q ss_pred CCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccc------cCCceEEEEeCCCCCHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK------FKDNIFFVTVSQTPNVKGIVQK 209 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~~wv~~~~~~~~~~~~~~ 209 (784)
-+.++||+.++.++++.|......-+.++|.+|+||||+|+.++. ++... ...+++.++++.-.
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~~l~-------- 255 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLGLLQ-------- 255 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehhhhh--------
Confidence 356899999999999999876666778999999999999999987 43221 11223333332110
Q ss_pred HHHHcCCCCCCCCChHHHHHHHHHHhccc--CCCcEEEEEeCCCCCc--------hH---HHhhhhccCCC-ceEEEecc
Q 003950 210 VYQHKGYAVPEFQTDEDAINDLERLLKPI--RPEAILLVLDDVWSGS--------ES---LLQKFKFQLPY-YKILVTSR 275 (784)
Q Consensus 210 i~~~l~~~~~~~~~~~~~~~~l~~~~~~l--~~kr~LlVlDdv~~~~--------~~---~~~~~~~~~~g-s~iivTtR 275 (784)
. ......+....++.+++.+ .+++.+|++|+++... .. ++.+.. ..| -++|-||.
T Consensus 256 -----a----g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT 324 (852)
T TIGR03345 256 -----A----GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATT 324 (852)
T ss_pred -----c----ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecC
Confidence 0 0001122234444444322 2578999999985432 11 222221 233 45555554
Q ss_pred cc----c-------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCC-cCHHHHHHHHHHcCCch
Q 003950 276 SV----F-------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYI-PDENLVNKILRACKGCP 329 (784)
Q Consensus 276 ~~----~-------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~-~~~~~~~~i~~~~~g~P 329 (784)
.. . ...-..+.+++++.+++.+++....-.-...... -..+....+++.+.+.+
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 31 1 1112379999999999999975443221110011 13566677777776653
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.87 E-value=0.002 Score=70.38 Aligned_cols=152 Identities=16% Similarity=0.215 Sum_probs=93.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 236 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 236 (784)
...+.|+|.+|+|||+|++++++ .+.... ...+++++. .++...+...+... . ...+...+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~- 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTNDFVNALRNN-----K----MEEFKEKY- 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----C----HHHHHHHH-
Confidence 35789999999999999999998 454443 344556643 34444555444321 1 11222222
Q ss_pred ccCCCcEEEEEeCCCCCc------hHHHhhhhcc-CCCceEEEeccccc-------------ccCCCceeccCCCHHHHH
Q 003950 237 PIRPEAILLVLDDVWSGS------ESLLQKFKFQ-LPYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAAR 296 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~~------~~~~~~~~~~-~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~a~ 296 (784)
++ .-+||+||+.... +.+...+... ..|..+|+||.... ...+.++.+++.+.++-.
T Consensus 198 --~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 198 --RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred --Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 22 3488999996432 1122323221 24567888886531 111236889999999999
Q ss_pred HHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 297 TLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 297 ~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
+++...+...+. .-.+++...|++.+.|.+-.+.
T Consensus 275 ~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 275 AILQKKAEEEGL---ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHH
Confidence 999888755332 1237788899999998776544
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00055 Score=77.73 Aligned_cols=188 Identities=14% Similarity=0.159 Sum_probs=106.1
Q ss_pred CCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccc-cCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 137 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK-FKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
..++|.+..++.|..++..+. .+.+.++|+.|+||||+|+.+++. +-.. ... . .......-+..+.+....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~--L~c~~~~~-~----~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKS--LNCLNSDK-P----TPEPCGKCELCRAIAAGN 88 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHH--hcCCCcCC-C----CCCCCcccHHHHHHhcCC
Confidence 567999999999988888655 367889999999999999999873 2110 000 0 001111112222232221
Q ss_pred CCCCCCCC-ChHHHHHHHHHHh-----cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------
Q 003950 215 GYAVPEFQ-TDEDAINDLERLL-----KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 278 (784)
Q Consensus 215 ~~~~~~~~-~~~~~~~~l~~~~-----~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 278 (784)
........ ......+.+++++ ....+++-++|+|++...... ++..+......+.+|++|.+..
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 11000000 0001122222222 112356678999999876532 4444444334555665554431
Q ss_pred ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 279 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 279 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
......+.+..++.++....+.+.+...+. .-..+.+..|++.++|.+..+..
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi---~is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESI---EIEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 122346888899999888877776644322 11356788999999998865543
No 138
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.86 E-value=0.00037 Score=76.31 Aligned_cols=175 Identities=17% Similarity=0.194 Sum_probs=104.2
Q ss_pred CCCCCCCCchhH--HHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCCCCHHHHHHHHH
Q 003950 136 PPVTPGLDVPLQ--ELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQKVY 211 (784)
Q Consensus 136 ~~~~vGr~~~~~--~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i~ 211 (784)
+..++|-..... ...++....+ ..-+.|+|.+|+|||+||+++++ .+.... ..+++|++. .++...+.
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~ 176 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_pred cccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHH
Confidence 345567544332 2223332222 45699999999999999999998 554443 445666654 45566666
Q ss_pred HHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc------hHHHhhhhc-cCCCceEEEeccccc------
Q 003950 212 QHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS------ESLLQKFKF-QLPYYKILVTSRSVF------ 278 (784)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~------~~~~~~~~~-~~~gs~iivTtR~~~------ 278 (784)
..+... . ...... ..+.+.-+|++||+.... +.+...+.. ...|..||+||....
T Consensus 177 ~~~~~~-----~----~~~f~~---~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 177 DSMKEG-----K----LNEFRE---KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred HHHhcc-----c----HHHHHH---HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 555321 1 111221 112345689999996432 123333322 123557888885320
Q ss_pred -------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 279 -------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 279 -------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
...+.++.+++.+.+.-.+++.+.+...+. .-.+++..-|++.+.|..-.+.
T Consensus 245 ~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~---~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 245 QDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG---ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHhccccCHHHHH
Confidence 123447889999999999999888754322 1236788999999988755444
No 139
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00039 Score=78.75 Aligned_cols=191 Identities=17% Similarity=0.185 Sum_probs=106.4
Q ss_pred CCCCCCCCchhHHHHHHHHhCCc-EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-..++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++...-...... .....-.....|...-
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~--------~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA--------EPCNVCPPCVEITEGR 86 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC--------CCCCccHHHHHHhcCC
Confidence 35789999989999998886664 56789999999999999998762110000000 0000001111111000
Q ss_pred CCCC---C-CCCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------
Q 003950 215 GYAV---P-EFQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 278 (784)
Q Consensus 215 ~~~~---~-~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 278 (784)
.... . ......+....+....+ -..+++-++|+|++...... ++..+....+.+.+|++|.+..
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 0000 0 00001111222222221 12456668999999776532 4555555555677776664431
Q ss_pred ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch-hHHHHHHh
Q 003950 279 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP-LALTVVGG 337 (784)
Q Consensus 279 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 337 (784)
...+..+++.+++.++....+...+...+. .-..+....|++.++|.. .|+..+-.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi---~i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGI---SISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 112337889999999888887766544332 123677888999999976 45544433
No 140
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00068 Score=76.42 Aligned_cols=186 Identities=19% Similarity=0.176 Sum_probs=104.1
Q ss_pred CCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccccc-ccCCceEEEEeCCCCCHHHHHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
-..++|.+..++.+..++..+. .+.+.++|+.|+||||+|+.+... +-. +-.. ....+.-...+.+...
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAka--l~c~~~~~-------~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKA--VNCLNPPD-------GEPCNECEICKAITNG 85 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCC-------CCCCCccHHHHHHhcC
Confidence 4578999999999999998654 566788999999999999998762 210 0000 0000111111112111
Q ss_pred cCCCCCC----CCChHHHHHHHHHHhc--ccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc-----
Q 003950 214 KGYAVPE----FQTDEDAINDLERLLK--PIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF----- 278 (784)
Q Consensus 214 l~~~~~~----~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~----- 278 (784)
....... .....+....+..... -..+++-++|+|++...... ++..+....+...+|++|....
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 0000000 0011111222222221 22566778899999766543 4444443334555565554331
Q ss_pred -ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 279 -PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 279 -~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
......+.+.+++.++....+...+...+. .-..+.+..|++.++|.+.-+.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 111236888999999988888877644332 1235778889999999875443
No 141
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.83 E-value=0.0018 Score=71.66 Aligned_cols=152 Identities=17% Similarity=0.223 Sum_probs=93.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 236 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 236 (784)
...+.|+|.+|+|||+|++++.+ .+...+ ..++++++. .++...+...+... . ...+...+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~- 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----T----MEEFKEKY- 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----c----HHHHHHHH-
Confidence 35699999999999999999998 555554 334555543 33344444444211 0 11222222
Q ss_pred ccCCCcEEEEEeCCCCCc------hHHHhhhhc-cCCCceEEEeccccc-------------ccCCCceeccCCCHHHHH
Q 003950 237 PIRPEAILLVLDDVWSGS------ESLLQKFKF-QLPYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAAR 296 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~~------~~~~~~~~~-~~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~a~ 296 (784)
+ +.-+||+||+.... +.+...+.. ...|..||+||.... ...+.++.+++.+.++-.
T Consensus 210 --~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 210 --R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred --h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 2 34489999996432 122332222 123556888886541 112347899999999999
Q ss_pred HHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 297 TLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 297 ~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
+++.+.+...+. .-.+++..-|++.+.|..-.+.
T Consensus 287 ~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 287 AILKKKAEEEGI---DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHcCC---CCCHHHHHHHHcCcCCCHHHHH
Confidence 999988754322 2247888999999999876544
No 142
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.0089 Score=65.42 Aligned_cols=146 Identities=17% Similarity=0.233 Sum_probs=87.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhccc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI 238 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l 238 (784)
..+.|+|+.|+|||+|++++++ .+... ...+++++. ..+...+...+... ..+.++...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~--~l~~~-~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~~~~--- 200 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVH--ALRES-GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFRQFY--- 200 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH--HHHHc-CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHHHHc---
Confidence 5689999999999999999998 44332 233556552 34445555554321 112222222
Q ss_pred CCCcEEEEEeCCCCCc------hHHHhhhhc-cCCCceEEEeccccc-------------ccCCCceeccCCCHHHHHHH
Q 003950 239 RPEAILLVLDDVWSGS------ESLLQKFKF-QLPYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAARTL 298 (784)
Q Consensus 239 ~~kr~LlVlDdv~~~~------~~~~~~~~~-~~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~a~~l 298 (784)
...-+|++||+.... +.+...+.. ...|..||+||.... ...+.++.+.+++.++-.++
T Consensus 201 -~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 -RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred -ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 234588899985432 112222221 124667888886531 11234788999999999999
Q ss_pred HHHHhccCCCCCCCcCHHHHHHHHHHcCCch
Q 003950 299 FRYSANLQDGNSYIPDENLVNKILRACKGCP 329 (784)
Q Consensus 299 f~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 329 (784)
+.+++-..+. .-.+++..-|+..+.|.-
T Consensus 280 L~~k~~~~~~---~l~~evl~~la~~~~~di 307 (445)
T PRK12422 280 LERKAEALSI---RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHHhcCCCH
Confidence 9887754332 113566777777777543
No 143
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.80 E-value=4e-05 Score=80.18 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=61.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC--CCHHHHHHHHHHHcCCCCCCCCChH--HHHHHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT--PNVKGIVQKVYQHKGYAVPEFQTDE--DAINDLE 232 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~l~ 232 (784)
.-+.++|+|++|.|||||++.+++... .++|+. ..|+.+.+. .++.++++.+...+-....+.+... .....+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv-~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEV-ELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCce-EEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 457899999999999999999998432 236887 449988755 6899999998544322221111111 1111111
Q ss_pred HHhcc--cCCCcEEEEEeCCCCC
Q 003950 233 RLLKP--IRPEAILLVLDDVWSG 253 (784)
Q Consensus 233 ~~~~~--l~~kr~LlVlDdv~~~ 253 (784)
+..++ -.+++++|++|++..-
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 21111 2689999999999543
No 144
>PRK06620 hypothetical protein; Validated
Probab=97.80 E-value=0.00042 Score=67.88 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=90.1
Q ss_pred CCCCCCCCCCch--hHHHHHHHHhCC--c--EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHH
Q 003950 134 DPPPVTPGLDVP--LQELKLELFKDG--R--QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 134 ~~~~~~vGr~~~--~~~l~~~L~~~~--~--~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 207 (784)
..+..++|-..+ ...+.++-...+ . +.+.|+|++|+|||+|++.+++.. . ..++. ..+..
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~--~------~~~~~--~~~~~---- 79 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS--N------AYIIK--DIFFN---- 79 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc--C------CEEcc--hhhhc----
Confidence 344566776332 333333332111 2 569999999999999999987732 1 11221 00000
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch-HHHhhhhc-cCCCceEEEeccccccc-----
Q 003950 208 QKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE-SLLQKFKF-QLPYYKILVTSRSVFPQ----- 280 (784)
Q Consensus 208 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~-~~~~~~~~-~~~gs~iivTtR~~~~~----- 280 (784)
. ... ...-++++||+....+ .+...+.. ...|..||+|++.....
T Consensus 80 -----------------~-------~~~----~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~ 131 (214)
T PRK06620 80 -----------------E-------EIL----EKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPD 131 (214)
T ss_pred -----------------h-------hHH----hcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHH
Confidence 0 001 1234788899975432 22222221 14577899999865221
Q ss_pred ------CCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 281 ------FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 281 ------~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
.+.++++++++.++-.+++.+.+...+- .-.+++..-|++++.|.--.+.
T Consensus 132 L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l---~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 132 LSSRIKSVLSILLNSPDDELIKILIFKHFSISSV---TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHH
Confidence 2337999999999988888776643221 1237788888888888655544
No 145
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.79 E-value=0.00063 Score=66.21 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCCCCCCCCCCchhHHHHHHHH----hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 133 PDPPPVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 133 ~~~~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+...+.++|.+.+++.|++-.. .....-+.+||..|.|||++++++.+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence 3445678999999988876544 44567788999999999999999987
No 146
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.79 E-value=0.00026 Score=72.17 Aligned_cols=43 Identities=26% Similarity=0.207 Sum_probs=32.1
Q ss_pred CCCCCCchhHHHHHHHH---------h------CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 138 VTPGLDVPLQELKLELF---------K------DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~---------~------~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|.+..+++|.+... . ....-+.++|++|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 46888887776654432 1 1245688999999999999999986
No 147
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.78 E-value=2.6e-06 Score=93.35 Aligned_cols=173 Identities=19% Similarity=0.225 Sum_probs=86.7
Q ss_pred ccCCCCCcEEEeecccccCCcCcCccc-cCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccc
Q 003950 541 LEKMDKLKVMIVTNYGFFPAELSNIQV-FGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSD 618 (784)
Q Consensus 541 l~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 618 (784)
+..+++|..|++.+|.+- .+.. +..+++|++|++++|.|+.+ ....+..|+.|.+.+|.+..+....
T Consensus 91 l~~~~~l~~l~l~~n~i~-----~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~------ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-----KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLE------ 159 (414)
T ss_pred cccccceeeeeccccchh-----hcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCc------
Confidence 555666667776665331 1112 45566777777777777666 5556666777777777665543322
Q ss_pred cCCceEEEEEeCCCCCCCCC-cccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCC--CC
Q 003950 619 AFPNLLEIDIDYCNDLIELP-DGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLS--NL 695 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~--~L 695 (784)
.+++|+.+++++|.+...-+ . ...+.+|+.+.+.+|.+.. ...+..+..+..+++..|.+...- .+..+. .|
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L 234 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHL 234 (414)
T ss_pred cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceecc--CcccchhHHH
Confidence 35667777777765443222 1 3556666666666654322 112223333333344443322211 111112 24
Q ss_pred CEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC
Q 003950 696 NFLDISECLNIQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 696 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
+.+++++|.. ..++..+..+..+..|++.+|.+.
T Consensus 235 ~~l~l~~n~i-~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 235 RELYLSGNRI-SRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHhcccCcc-ccccccccccccccccchhhcccc
Confidence 5555555432 222233444455555555555443
No 148
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00065 Score=71.02 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=61.7
Q ss_pred CCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCC
Q 003950 239 RPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDG 308 (784)
Q Consensus 239 ~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~ 308 (784)
.+++-++|+|++...... ++..+....+++.+|+||.+.. ..-...+.+.+++.+++.+.+......
T Consensus 104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~--- 180 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE--- 180 (328)
T ss_pred cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc---
Confidence 345556678999876633 6666666556788888887762 122347899999999999888765311
Q ss_pred CCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 309 NSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 309 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
..++.+..++..++|.|+.+..+
T Consensus 181 ----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHH
Confidence 12455677899999999766544
No 149
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.77 E-value=0.00013 Score=77.65 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=69.8
Q ss_pred CCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 136 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
...+++.+..++.+...|.. .+.|.++|++|+|||++|+++++.......|.. +.|+.++...+..+++....-. +
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~-v~~VtFHpsySYeDFI~G~rP~-~ 249 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQR-VNMVQFHQSYSYEDFIQGYRPN-G 249 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccce-eeEEeecccccHHHHhcccCCC-C
Confidence 34578889999999988874 357888999999999999999874322334444 7799999888777655422100 0
Q ss_pred CCCCCCCChHH-HHHHHHHHhcccCCCcEEEEEeCCCCCc
Q 003950 216 YAVPEFQTDED-AINDLERLLKPIRPEAILLVLDDVWSGS 254 (784)
Q Consensus 216 ~~~~~~~~~~~-~~~~l~~~~~~l~~kr~LlVlDdv~~~~ 254 (784)
....-... ..+.+.... .-.+++++||+|++....
T Consensus 250 ---vgy~~~~G~f~~~~~~A~-~~p~~~~vliIDEINRan 285 (459)
T PRK11331 250 ---VGFRRKDGIFYNFCQQAK-EQPEKKYVFIIDEINRAN 285 (459)
T ss_pred ---CCeEecCchHHHHHHHHH-hcccCCcEEEEehhhccC
Confidence 00000001 111111111 113578999999997665
No 150
>CHL00181 cbbX CbbX; Provisional
Probab=97.74 E-value=0.00063 Score=69.91 Aligned_cols=148 Identities=17% Similarity=0.120 Sum_probs=78.9
Q ss_pred CCCCCCchhHHHHHHHH--------h-------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCC
Q 003950 138 VTPGLDVPLQELKLELF--------K-------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN 202 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~--------~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~ 202 (784)
.++|.+..+++|.++.. . .....+.++|++|+||||+|+.+++...-.+.-..+- |+.++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~-~~~v~---- 98 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGH-LLTVT---- 98 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCc-eEEec----
Confidence 46888777765554432 0 1123588999999999999999976211111111112 45444
Q ss_pred HHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCC---------chH----HHhhhhccCCCce
Q 003950 203 VKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSG---------SES----LLQKFKFQLPYYK 269 (784)
Q Consensus 203 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~---------~~~----~~~~~~~~~~gs~ 269 (784)
..++... ..+.. . ......++...+ -+|++|++... ... +...+.....+.+
T Consensus 99 ~~~l~~~----~~g~~-----~----~~~~~~l~~a~g--gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~ 163 (287)
T CHL00181 99 RDDLVGQ----YIGHT-----A----PKTKEVLKKAMG--GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLV 163 (287)
T ss_pred HHHHHHH----Hhccc-----h----HHHHHHHHHccC--CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 2222222 11110 0 112233322223 48999999642 111 2222333334566
Q ss_pred EEEeccccc------------ccCCCceeccCCCHHHHHHHHHHHhcc
Q 003950 270 ILVTSRSVF------------PQFGSGYDLKPLNDEAARTLFRYSANL 305 (784)
Q Consensus 270 iivTtR~~~------------~~~~~~~~l~~L~~~~a~~lf~~~a~~ 305 (784)
||+++.... ......+.+++++.+|..+++...+-.
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 777764321 123347889999999999888777644
No 151
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.71 E-value=2.9e-06 Score=86.65 Aligned_cols=226 Identities=17% Similarity=0.241 Sum_probs=130.0
Q ss_pred cCCCCCcEEEeecccccCC-cCcCccccCCCCCCCEEEecccCCCCc-----cccccccCceeeeeeccccccccCcccc
Q 003950 542 EKMDKLKVMIVTNYGFFPA-ELSNIQVFGALSNLKRIRLEHVSLPSL-----TTVRMKHLQNVSLVMCNVDQVVQNSTFH 615 (784)
Q Consensus 542 ~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 615 (784)
..+++|.+|+++.+..+.. ++.. .+.++.+++.+.+.+|.=..+ ....+.-+..+++..| +.+.+.....
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~--~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c--~~lTD~~~~~ 288 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQA--LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC--NQLTDEDLWL 288 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchH--HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhh--ccccchHHHH
Confidence 4566666666666533322 1111 123444444444443321111 1112233445554455 2222222223
Q ss_pred ccccCCceEEEEEeCCCCCCCCC--cccCCCCCCcEEEccCCCCCCCCc-hhc-cCCCCCCEEEeecCCCCCC--Ccccc
Q 003950 616 FSDAFPNLLEIDIDYCNDLIELP--DGLCDIVSIKKLRITNCHKLSALP-EGI-GKLVNLQMLTLASCTDLSA--LPDTI 689 (784)
Q Consensus 616 ~~~~l~~L~~L~L~~~~~~~~lp--~~i~~l~~L~~L~L~~~~~~~~lp-~~l-~~l~~L~~L~L~~~~~~~~--~p~~~ 689 (784)
+...+..|++|..++|...+..+ .-..+..+|++|-+.+|+..+..- ..+ .+.+.|+.+++.+|..... +-..-
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 33456778888888876644322 112456788888888887544321 112 3567888888887755432 33334
Q ss_pred cCCCCCCEEeccCCCCCCcc-----chhhhCCCCCCEEeccCCCCC--CcChhhhCCCCCCEEe---CCCCchhcHHHHh
Q 003950 690 GNLSNLNFLDISECLNIQEL-----PERIGELCSLKTLCLKGCSMF--ELPSSILNLENLEVVK---CDEETAYQWEYFQ 759 (784)
Q Consensus 690 ~~l~~L~~L~l~~n~~~~~~-----p~~l~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~---l~~~~~~~~~~~~ 759 (784)
.+++.|+.|.+++|..++.. ...-..+..|+.+.+++|+.. ..-..+..+++|+.++ |.+.+......+.
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 57789999999998766543 223345788999999999954 2334566677777664 5556667778888
Q ss_pred hcCCCcEEeeec
Q 003950 760 LGQAKFRIEVIQ 771 (784)
Q Consensus 760 ~~lp~L~i~~~~ 771 (784)
+++|++++.---
T Consensus 449 ~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 449 THLPNIKVHAYF 460 (483)
T ss_pred hhCccceehhhc
Confidence 889999876443
No 152
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.70 E-value=0.0011 Score=73.80 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=93.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 236 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 236 (784)
...+.|+|..|+|||.|++++++ .....+ ..++++++. .++...+...+... ..+.+.+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y- 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRY- 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHh-
Confidence 35689999999999999999998 444433 334556653 44444554443211 011222222
Q ss_pred ccCCCcEEEEEeCCCCCc------hHHHhhhhcc-CCCceEEEeccccc-------------ccCCCceeccCCCHHHHH
Q 003950 237 PIRPEAILLVLDDVWSGS------ESLLQKFKFQ-LPYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAAR 296 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~~------~~~~~~~~~~-~~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~a~ 296 (784)
. +.=+|||||+.... +.+...|... ..|..|||||+... ...+.++.+.+.+.+.-.
T Consensus 376 --~-~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 376 --R-EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred --h-cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 2 23578899996542 1133333222 23667899988641 122447899999999999
Q ss_pred HHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 297 TLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 297 ~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
+++.+++...+. .-.++++.-|++++.+..-.+.
T Consensus 453 aIL~kka~~r~l---~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 453 AILRKKAVQEQL---NAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHhccCCHHHHH
Confidence 999888754432 2237888888888887754444
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.69 E-value=0.00037 Score=82.66 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=39.4
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.++||+.++.++++.|......-+.++|.+|+|||++|+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999876666778999999999999999987
No 154
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0014 Score=67.90 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=97.2
Q ss_pred hhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccc----------------cccCCceEEEEe-CCCCCHHHH
Q 003950 145 PLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVL----------------GKFKDNIFFVTV-SQTPNVKGI 206 (784)
Q Consensus 145 ~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~----------------~~f~~~~~wv~~-~~~~~~~~~ 206 (784)
..+.+...+..+. ...+.++|+.|+||+++|..++..---. +..++ ..|+.. .+..+.
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~--- 87 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGD--- 87 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcccc---
Confidence 3456666666555 4579999999999999998887521100 11122 222210 000000
Q ss_pred HHHHHHHcCCCCCCCCChHHHHHHHHHHh-----cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEecccc
Q 003950 207 VQKVYQHKGYAVPEFQTDEDAINDLERLL-----KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 207 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-----~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~ 277 (784)
. ....-.++.++++. .-..+++-++|+|++...... ++..+....+++.+|++|.+.
T Consensus 88 -------------k-~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 88 -------------K-LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred -------------c-ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 0 00011122333332 222467789999999766532 666666666788888888765
Q ss_pred c------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 278 F------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 278 ~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
. ..-...+.+.+++.+++.+.+.... . .+..+..++..++|.|+.+..+
T Consensus 154 ~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~-----~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 154 ARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V-----SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 2 1223378899999999988886431 1 1344678899999999876544
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.68 E-value=0.00022 Score=84.64 Aligned_cols=172 Identities=12% Similarity=0.124 Sum_probs=93.4
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccccccc-----ccCCceEEEEeCCCCCHHHHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-----KFKDNIFFVTVSQTPNVKGIVQKVY 211 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-----~f~~~~~wv~~~~~~~~~~~~~~i~ 211 (784)
..++||+++++++++.|......-+.++|++|+|||++|+.++. ++.. ......+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~--~i~~~~vp~~l~~~~i~~-l----~~~~l~---- 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQ--RIVNRDVPDILEDKLVIT-L----DIGLLL---- 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEE-e----eHHHHh----
Confidence 45799999999999999866556678999999999999999987 3321 122223342 1 111111
Q ss_pred HHcCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCc-----------hHHHhhhhccCCCceEEEeccccc-
Q 003950 212 QHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGS-----------ESLLQKFKFQLPYYKILVTSRSVF- 278 (784)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~-----------~~~~~~~~~~~~gs~iivTtR~~~- 278 (784)
.+. ....+..+.++.+++.+ ..++.+|++|+++... ..++.+....+.=..|..||..+.
T Consensus 248 ---ag~----~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~ 320 (821)
T CHL00095 248 ---AGT----KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR 320 (821)
T ss_pred ---ccC----CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHH
Confidence 111 11123334555555333 3568999999984211 112222211111233444554431
Q ss_pred ---------ccCCCceeccCCCHHHHHHHHHHHh--ccCCCCCCCcCHHHHHHHHHHcCC
Q 003950 279 ---------PQFGSGYDLKPLNDEAARTLFRYSA--NLQDGNSYIPDENLVNKILRACKG 327 (784)
Q Consensus 279 ---------~~~~~~~~l~~L~~~~a~~lf~~~a--~~~~~~~~~~~~~~~~~i~~~~~g 327 (784)
...-..+.++..+.++..+++.... +....... -.+++...+++.++|
T Consensus 321 ~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~-i~deal~~i~~ls~~ 379 (821)
T CHL00095 321 KHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLS-ISDKALEAAAKLSDQ 379 (821)
T ss_pred HHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhc
Confidence 1111267888889999888876432 11111111 124555666666654
No 156
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.66 E-value=0.00042 Score=76.03 Aligned_cols=151 Identities=14% Similarity=0.196 Sum_probs=84.4
Q ss_pred CCCCCCCchhHHHHHHHHh-------------CCcEEEEEEcCCCCcHHHHHHHHhccccccccc----CCceEEEEeCC
Q 003950 137 PVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF----KDNIFFVTVSQ 199 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~~wv~~~~ 199 (784)
..+.|.+..++++.+.+.- ...+-+.++|++|+|||++|+++++ .+...+ .....++.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~--eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN--SLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH--hhccccccccCCceeEEeccc
Confidence 4567899999998887641 1246699999999999999999998 433321 12233555432
Q ss_pred CCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-c-ccCCCcEEEEEeCCCCCc---------h---HHHhhh----
Q 003950 200 TPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-K-PIRPEAILLVLDDVWSGS---------E---SLLQKF---- 261 (784)
Q Consensus 200 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~-~l~~kr~LlVlDdv~~~~---------~---~~~~~~---- 261 (784)
. +++. ...+ ..+.....+.... + ...+++++|+||+++... + .++..|
T Consensus 260 ~----eLl~----kyvG------ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 P----ELLN----KYVG------ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h----hhcc----cccc------hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1 1111 0000 0111111111111 1 113578999999995321 1 112222
Q ss_pred hcc--CCCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHh
Q 003950 262 KFQ--LPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSA 303 (784)
Q Consensus 262 ~~~--~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a 303 (784)
... .++..||.||.... . .....++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 111 13445666665431 1 223368999999999999998876
No 157
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.65 E-value=0.00083 Score=69.08 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=78.7
Q ss_pred CCCCCCchhHHHHHHHH---------hCC------cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCC
Q 003950 138 VTPGLDVPLQELKLELF---------KDG------RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN 202 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~---------~~~------~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~ 202 (784)
.++|.+..+++|.+... ..+ ..-+.++|++|+|||++|+.++....-.+....+. ++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~-~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGH-LVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccce-EEEecH---
Confidence 35787777666655422 111 22588999999999999987765211111111112 444432
Q ss_pred HHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCC---------ch----HHHhhhhccCCCce
Q 003950 203 VKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSG---------SE----SLLQKFKFQLPYYK 269 (784)
Q Consensus 203 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~---------~~----~~~~~~~~~~~gs~ 269 (784)
.++ ...+.+.. . ..+...++.. ..-+|+||++... .. .+...+.....+.+
T Consensus 99 -~~l----~~~~~g~~-----~----~~~~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 99 -DDL----VGQYIGHT-----A----PKTKEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred -HHH----hHhhcccc-----h----HHHHHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 222 22221110 1 1223334322 2358899999632 01 12333333334566
Q ss_pred EEEecccc----c--------ccCCCceeccCCCHHHHHHHHHHHhcc
Q 003950 270 ILVTSRSV----F--------PQFGSGYDLKPLNDEAARTLFRYSANL 305 (784)
Q Consensus 270 iivTtR~~----~--------~~~~~~~~l~~L~~~~a~~lf~~~a~~ 305 (784)
||+++... . ......+.+++++.+|-.+++...+-.
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 77776432 1 112347899999999999998876633
No 158
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=7.8e-05 Score=52.02 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=22.9
Q ss_pred CCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcC
Q 003950 693 SNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELP 733 (784)
Q Consensus 693 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp 733 (784)
++|++|++++|.+ ..+|+.+++|++|+.|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCC-cccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3566666666643 345555666666666666666666554
No 159
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.62 E-value=0.0022 Score=70.59 Aligned_cols=197 Identities=17% Similarity=0.155 Sum_probs=122.2
Q ss_pred CCCCCCCCCchhHHHHHHHH----h-CCcEEEEEEcCCCCcHHHHHHHHhcccc------cccccCCceEEEEeCCCCCH
Q 003950 135 PPPVTPGLDVPLQELKLELF----K-DGRQVIVVSAPGGYGKTTLVKKLCKDDQ------VLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~----~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~------~~~~f~~~~~wv~~~~~~~~ 203 (784)
.|..+-+|+.+..+|..++. . +..+.+.|.|-+|+|||+.+..|.+..+ --..|+. + .++.-.-..+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-v-eINgm~l~~~ 471 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-V-EINGLRLASP 471 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-E-EEcceeecCH
Confidence 45678899999999999887 2 3356999999999999999999987321 1234554 3 5555566679
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc--ccCCCcEEEEEeCC---CCCchHHHhhh-hc-cCCCceEEEeccc
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK--PIRPEAILLVLDDV---WSGSESLLQKF-KF-QLPYYKILVTSRS 276 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~--~l~~kr~LlVlDdv---~~~~~~~~~~~-~~-~~~gs~iivTtR~ 276 (784)
.+++..|..++.+... ......+.|...+. .-+.+..+|++|++ ++..+.++..| .| ..++||++|-+=.
T Consensus 472 ~~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 472 REIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 9999999999976543 23445556666552 23566788888876 44445555444 44 4578987766533
Q ss_pred cc--------------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHH
Q 003950 277 VF--------------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVG 336 (784)
Q Consensus 277 ~~--------------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 336 (784)
.. ......+...+.+.++-.++...+..+...-.+...+-++++|+...|-.-.|+.+.-
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 21 0111246667777777777666555333211111123344555555555445544433
No 160
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.61 E-value=0.0042 Score=60.31 Aligned_cols=175 Identities=17% Similarity=0.247 Sum_probs=107.4
Q ss_pred hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeC-CCCCHHHHHHHHHHHcCCCCCCCCC---hHHHHHH
Q 003950 155 KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS-QTPNVKGIVQKVYQHKGYAVPEFQT---DEDAIND 230 (784)
Q Consensus 155 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~ 230 (784)
.++.+++.++|.-|.|||.+.+++.. ... +..+.-+.+. ...+...+...++..+..+. .... .......
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~--s~~---~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p-~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLA--SLN---EDQVAVVVIDKPTLSDATLLEAIVADLESQP-KVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHH--hcC---CCceEEEEecCcchhHHHHHHHHHHHhccCc-cchhHHHHHHHHHH
Confidence 56778999999999999999995543 111 2222223443 34567788888888887622 1111 1222233
Q ss_pred HHHHhcccCCCc-EEEEEeCCCCCchHHHhhhhccC----CCc---eEEEeccccc---------ccCC---Cc-eeccC
Q 003950 231 LERLLKPIRPEA-ILLVLDDVWSGSESLLQKFKFQL----PYY---KILVTSRSVF---------PQFG---SG-YDLKP 289 (784)
Q Consensus 231 l~~~~~~l~~kr-~LlVlDdv~~~~~~~~~~~~~~~----~gs---~iivTtR~~~---------~~~~---~~-~~l~~ 289 (784)
|.+..+ +++| ..+++||........++.+.-.. .++ +|+..-..+. .... .. |.+.|
T Consensus 122 L~al~~--~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 122 LAALVK--KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHHH--hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 333332 6777 99999998766544333332111 112 2333322220 1111 13 89999
Q ss_pred CCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHh
Q 003950 290 LNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGG 337 (784)
Q Consensus 290 L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 337 (784)
++.++...++.++..+...+.+....+....|.....|.|.+|..++.
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999999888876665443344478889999999999999987654
No 161
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=4.4e-05 Score=53.29 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=35.6
Q ss_pred CCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHHHH
Q 003950 717 CSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEYF 758 (784)
Q Consensus 717 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 758 (784)
++|++|++++|.|+.+|..+.+|++|+.|++++|....++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 579999999999999998899999999999999987765543
No 162
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.00036 Score=68.31 Aligned_cols=166 Identities=22% Similarity=0.252 Sum_probs=101.0
Q ss_pred CCCCCCCCCCCchhHHHHHHHH-----hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHH
Q 003950 133 PDPPPVTPGLDVPLQELKLELF-----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 133 ~~~~~~~vGr~~~~~~l~~~L~-----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 207 (784)
|..-.+|+|-+.-++++.=++. .+..--|.++|++|.||||||.-+++ +....+.. .-+....
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~-----tsGp~le----- 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLKI-----TSGPALE----- 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeEe-----ccccccc-----
Confidence 3444678999998888877776 23467899999999999999999998 44433321 1110000
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch---HHH----hhh-----hccCCCce------
Q 003950 208 QKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE---SLL----QKF-----KFQLPYYK------ 269 (784)
Q Consensus 208 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~---~~~----~~~-----~~~~~gs~------ 269 (784)
.. ..+..++..|+.. =++.+|.++.... .++ +.| ...++++|
T Consensus 90 ---------------K~----gDlaaiLt~Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 90 ---------------KP----GDLAAILTNLEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ---------------Ch----hhHHHHHhcCCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 01 1122223222333 3445677755431 111 111 12234444
Q ss_pred -----EEEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 270 -----ILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 270 -----iivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
|=-|||.-. ...+.+.+++..+.+|-.++..+.+..-+. .-.++.+.+|+++..|-|--+.
T Consensus 150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i---~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI---EIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC---CCChHHHHHHHHhccCCcHHHH
Confidence 336787652 234558899999999999999887744332 2247889999999999995443
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.60 E-value=0.00038 Score=82.88 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=85.3
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccc------cCCceEEEEeCCCCCHHHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK------FKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
..++||+.++.++++.|......-+.++|.+|+|||++|+.++. ++... ....++.++++ .+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~--~i~~~~~p~~l~~~~~~~l~~~------~l---- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQ--RIVNGDVPESLKNKRLLALDMG------AL---- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHH--HHhccCCchhhcCCeEEEeeHH------HH----
Confidence 45899999999999999866666777999999999999999887 33221 12223333321 11
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhccc--CCCcEEEEEeCCCCCc--------hHHHhhhhcc-CCC-ceEE-Eecccc
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPI--RPEAILLVLDDVWSGS--------ESLLQKFKFQ-LPY-YKIL-VTSRSV 277 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l--~~kr~LlVlDdv~~~~--------~~~~~~~~~~-~~g-s~ii-vTtR~~ 277 (784)
+. +. ....+....++.+++.+ .+++.+|++|+++... ......+.+. ..| -++| .||...
T Consensus 241 ~a---~~----~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 241 IA---GA----KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDE 313 (852)
T ss_pred hh---cc----hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHH
Confidence 10 00 00112233444444333 2468999999986332 0111222221 123 3344 445443
Q ss_pred c---c-------cCCCceeccCCCHHHHHHHHHHHh
Q 003950 278 F---P-------QFGSGYDLKPLNDEAARTLFRYSA 303 (784)
Q Consensus 278 ~---~-------~~~~~~~l~~L~~~~a~~lf~~~a 303 (784)
. . ..-..+.++..+.++..+++....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 1 111257888889999999887653
No 164
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.59 E-value=0.0012 Score=62.61 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=50.8
Q ss_pred CCCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 135 PPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
.-.++||-++.++++.-.-.++..+-+.|.||+|+||||-+..+++. -....|...++=.+.|+....+
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNASdeRGID 93 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNASDERGID 93 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCccccccH
Confidence 34578999999999877777888899999999999999988888772 2333455545555555554433
No 165
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.56 E-value=0.00017 Score=77.89 Aligned_cols=163 Identities=15% Similarity=0.206 Sum_probs=90.6
Q ss_pred CCCCCCCchhHHHHHHHH----h---------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELF----K---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
..+.|.+.++++|.+.+. . ...+-|.++|++|+|||++|+++++ .....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f------i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF------LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE------EEEecc---
Confidence 456789999998888774 1 1346788999999999999999998 433333 222111
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc-----------hH-------HHhhhhc-
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS-----------ES-------LLQKFKF- 263 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~-----------~~-------~~~~~~~- 263 (784)
++.. ...+ .....++.++ ....+.+.+|+||++.... .. ++..+..
T Consensus 252 -eL~~----k~~G---------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 252 -ELIQ----KYLG---------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred -hhhh----hhcc---------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 1111 1100 0111223333 1124567899999873210 00 1111211
Q ss_pred -cCCCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 264 -QLPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 264 -~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
...+.+||+||.... . .....+.++..+.++..++|..+.......... ....++..+.|.
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv----dl~~la~~t~g~ 388 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV----DLEEFIMAKDEL 388 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc----CHHHHHHhcCCC
Confidence 123567888887541 1 123378899999999999998776433221111 234555555554
No 166
>PRK08116 hypothetical protein; Validated
Probab=97.54 E-value=0.00038 Score=70.79 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=57.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhccc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI 238 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l 238 (784)
..+.++|.+|+|||.||.++++ .+..+ ...+++++ ..+++..+........ .....+ +++.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~-~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~----~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEK-GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENE----IIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHc-CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHH----HHHHh
Confidence 4589999999999999999998 44433 33355665 3455666655543211 111111 12222
Q ss_pred CCCcEEEEEeCCCC--CchHHH----hhhhc-cCCCceEEEecccc
Q 003950 239 RPEAILLVLDDVWS--GSESLL----QKFKF-QLPYYKILVTSRSV 277 (784)
Q Consensus 239 ~~kr~LlVlDdv~~--~~~~~~----~~~~~-~~~gs~iivTtR~~ 277 (784)
.+-. ||||||+.. ..+|.. .-+.. ...|..+||||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3333 899999943 234422 22221 23567799999753
No 167
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0016 Score=68.64 Aligned_cols=141 Identities=14% Similarity=0.140 Sum_probs=82.8
Q ss_pred CCC-CCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccccc-------------------ccCCceEEEEe
Q 003950 139 TPG-LDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG-------------------KFKDNIFFVTV 197 (784)
Q Consensus 139 ~vG-r~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~~wv~~ 197 (784)
++| -+..++.+...+..+. .+...++|+.|+||||+|+.+.+..--.+ .+++ ..++..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD-~~~i~~ 85 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD-VHLVAP 85 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEecc
Confidence 455 5556677777776555 56779999999999999998865210000 0111 111111
Q ss_pred CCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEE
Q 003950 198 SQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKIL 271 (784)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~ii 271 (784)
... ....+....+.+.+ ....+++-++|+|++...... ++..+....+++.+|
T Consensus 86 ~~~---------------------~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 86 DGQ---------------------SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred ccc---------------------cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 000 00111111222222 123456678999998766532 556666666678888
Q ss_pred Eeccccc------ccCCCceeccCCCHHHHHHHHHH
Q 003950 272 VTSRSVF------PQFGSGYDLKPLNDEAARTLFRY 301 (784)
Q Consensus 272 vTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~ 301 (784)
++|.+.. ......+++.+++.++..+.+..
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 8887652 22334799999999998887764
No 168
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=7.1e-06 Score=70.75 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=39.4
Q ss_pred CCCCcEEEccCCCCCCCCchhcc-CCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEE
Q 003950 644 IVSIKKLRITNCHKLSALPEGIG-KLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTL 722 (784)
Q Consensus 644 l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 722 (784)
..+|...+|++|. ...+|..+. +.+-+++|++++| .+..+|..+..++.|+.|+++.|.+ ...|.-+..|.+|-.|
T Consensus 52 ~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l-~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPL-NAEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCcc-ccchHHHHHHHhHHHh
Confidence 3444444555543 333333332 3334555555542 2334454455555555555555432 2233334445555555
Q ss_pred eccCCCCCCcC
Q 003950 723 CLKGCSMFELP 733 (784)
Q Consensus 723 ~l~~n~l~~lp 733 (784)
+..+|.+..+|
T Consensus 129 ds~~na~~eid 139 (177)
T KOG4579|consen 129 DSPENARAEID 139 (177)
T ss_pred cCCCCccccCc
Confidence 55555544444
No 169
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.54 E-value=0.00061 Score=76.86 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHh-----CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 132 APDPPPVTPGLDVPLQELKLELFK-----DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 132 ~~~~~~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|..-.+++|-+..++++..++.. ...+++.|+|++|+||||+++.++.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344557789999999999999873 2346799999999999999999987
No 170
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.0051 Score=65.15 Aligned_cols=169 Identities=15% Similarity=0.175 Sum_probs=96.4
Q ss_pred CCCCCCCCchhHHHHH-HHH-hC--CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKL-ELF-KD--GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVY 211 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~-~L~-~~--~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~ 211 (784)
+..++|-......-.. .+. .. ....+.|+|..|.|||.|++++.+ ......+. ...++++ .+.....++
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~-a~v~y~~----se~f~~~~v 159 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPN-ARVVYLT----SEDFTNDFV 159 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCC-ceEEecc----HHHHHHHHH
Confidence 4555666654432222 222 22 368999999999999999999999 66666654 2244442 334444444
Q ss_pred HHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc------hHHHhhhhcc-CCCceEEEecccccc-----
Q 003950 212 QHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS------ESLLQKFKFQ-LPYYKILVTSRSVFP----- 279 (784)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~------~~~~~~~~~~-~~gs~iivTtR~~~~----- 279 (784)
.++.. +. ...+.+.. .-=++++||++... +.+...|... ..|-.||+|++....
T Consensus 160 ~a~~~---------~~---~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 160 KALRD---------NE---MEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred HHHHh---------hh---HHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 44321 11 11222211 23388899995422 2233333322 234488888876521
Q ss_pred --------cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 280 --------QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 280 --------~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
..+-++.+.+.+.+...+++.+.+...+... .++++.-|++.....
T Consensus 226 ~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i---~~ev~~~la~~~~~n 279 (408)
T COG0593 226 EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEI---PDEVLEFLAKRLDRN 279 (408)
T ss_pred cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHhhcc
Confidence 2234799999999999999988765444321 245555555555443
No 171
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.49 E-value=0.00087 Score=71.98 Aligned_cols=164 Identities=17% Similarity=0.219 Sum_probs=91.8
Q ss_pred CCCCCCCchhHHHHHHHH----------h---CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELF----------K---DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~----------~---~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
..+.|.+..+++|.+.+. . ...+-|.++|++|+|||++|+++++. ....| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f----i~i~~------ 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF----IRVVG------ 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE----EEEeh------
Confidence 457899998888887764 1 13577999999999999999999983 22222 12211
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCC-----------chH-------HHhhhhc-
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSG-----------SES-------LLQKFKF- 263 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~-----------~~~-------~~~~~~~- 263 (784)
..+.... ++ +....++.++ ......+.+|++|++... +.. ++..+..
T Consensus 213 s~l~~k~---~g----------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 SEFVQKY---LG----------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred HHHHHHh---cc----------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 1111111 11 0112233333 112467899999997531 000 1111211
Q ss_pred -cCCCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch
Q 003950 264 -QLPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP 329 (784)
Q Consensus 264 -~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 329 (784)
...+..||+||.... . .....+.++..+.++..++|..+.......... ...++++.+.|.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv----d~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV----DLEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc----CHHHHHHHcCCCC
Confidence 123567888887541 1 223368888889888888888665433221111 2345666666653
No 172
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.004 Score=68.63 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=90.7
Q ss_pred CCCCCCCchhHHHHHHHH------hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELF------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
..-+|+++-+++|++++. +-+.++++.+|++|||||++|+.++. .....| |-++++.-.|..++
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF----fRfSvGG~tDvAeI---- 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF----FRFSVGGMTDVAEI---- 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce----EEEeccccccHHhh----
Confidence 445999999999999987 33568999999999999999999997 554444 24556555554443
Q ss_pred HHHcCCCCCC--CCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc--------hHHHhhhhccC-------------CC
Q 003950 211 YQHKGYAVPE--FQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS--------ESLLQKFKFQL-------------PY 267 (784)
Q Consensus 211 ~~~l~~~~~~--~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--------~~~~~~~~~~~-------------~g 267 (784)
.+.... ...+. ++-+.++..+...-|+.+|.|+... ..+++-+.+.. .=
T Consensus 481 ----kGHRRTYVGAMPG----kiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 481 ----KGHRRTYVGAMPG----KIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ----cccceeeeccCCh----HHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch
Confidence 111100 00111 2233334446677789999985322 22444433211 12
Q ss_pred ceEE-Eeccccccc-------CCCceeccCCCHHHHHHHHHHHh
Q 003950 268 YKIL-VTSRSVFPQ-------FGSGYDLKPLNDEAARTLFRYSA 303 (784)
Q Consensus 268 s~ii-vTtR~~~~~-------~~~~~~l~~L~~~~a~~lf~~~a 303 (784)
|+|+ |.|-+.... .-.+++|.+...+|-.++-.++.
T Consensus 553 SkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 6666 445444211 11278888888888877766654
No 173
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0042 Score=65.19 Aligned_cols=173 Identities=15% Similarity=0.097 Sum_probs=98.3
Q ss_pred hhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccc---ccccCCce----EEEEeCCCCCHHHHHHHHHHHcCC
Q 003950 145 PLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQV---LGKFKDNI----FFVTVSQTPNVKGIVQKVYQHKGY 216 (784)
Q Consensus 145 ~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~f~~~~----~wv~~~~~~~~~~~~~~i~~~l~~ 216 (784)
.-+++...+..++ ...+.+.|+.|+||+++|..++..--= .+.-+|+. -++..+..+|...+ ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TP 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 3456667776554 578889999999999999987652100 00001110 01111111111000 00
Q ss_pred CCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCCc
Q 003950 217 AVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGSG 284 (784)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~~ 284 (784)
......-..+....+.+.+ ....+++-++|+|++...... ++..+-...+++.+|++|.+.. ..-...
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 0000001122223333333 333577889999999766532 6777777777888888887652 222347
Q ss_pred eeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 285 YDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 285 ~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
+.+.+++.+++.+.+.... + ...+.+..++..++|.|..+.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~-----~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---T-----MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---C-----CCHHHHHHHHHHcCCCHHHHH
Confidence 8999999999988776432 1 124457788999999996544
No 174
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0055 Score=63.67 Aligned_cols=171 Identities=12% Similarity=0.147 Sum_probs=97.0
Q ss_pred hHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccccc---ccCCce----EEEEeCCCCCHHHHHHHHHHHcCCC
Q 003950 146 LQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLG---KFKDNI----FFVTVSQTPNVKGIVQKVYQHKGYA 217 (784)
Q Consensus 146 ~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~----~wv~~~~~~~~~~~~~~i~~~l~~~ 217 (784)
.+.+...+..+. ...+.+.|+.|+||+++|+.++..---.. .-+|+. -++..+..+|...+ . +
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~-p 81 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------E-P 81 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------c-c
Confidence 355666666544 57788999999999999998875210000 001100 00000111111000 0 0
Q ss_pred CCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCCce
Q 003950 218 VPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGSGY 285 (784)
Q Consensus 218 ~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~~~ 285 (784)
.....-..+....+.+.+ ....+++-++|+|++...... ++..+-...+++.+|++|.+.. ..-...+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 000001122222333333 233577778899999776632 6777777777888888887652 1223489
Q ss_pred eccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 286 DLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 286 ~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
.+.+++.++..+.+...... ....+...+..++|.|+.+.
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~--------~~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSA--------EISEILTALRINYGRPLLAL 201 (325)
T ss_pred eCCCCCHHHHHHHHHHHhcc--------ChHHHHHHHHHcCCCHHHHH
Confidence 99999999999888765311 12346677889999996443
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0029 Score=72.01 Aligned_cols=106 Identities=21% Similarity=0.323 Sum_probs=62.4
Q ss_pred CCCCCCCchhHHHHHHHHh---------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCc--eEEEEeCCCCCHHH
Q 003950 137 PVTPGLDVPLQELKLELFK---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDN--IFFVTVSQTPNVKG 205 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~--~~wv~~~~~~~~~~ 205 (784)
..++|-+..++.+.+.+.. ....+....|+.|||||.||++++. .+ |+.. .+-++.|+-....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~L---fg~e~aliR~DMSEy~EkH- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--AL---FGDEQALIRIDMSEYMEKH- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--Hh---cCCCccceeechHHHHHHH-
Confidence 4679999999999999871 1246778899999999999999987 22 4321 3333333321111
Q ss_pred HHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcE-EEEEeCCCCCchH
Q 003950 206 IVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAI-LLVLDDVWSGSES 256 (784)
Q Consensus 206 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~-LlVlDdv~~~~~~ 256 (784)
.+-+-+| ..|+-..-++ ...|. +.++.++| +|.||+|......
T Consensus 565 ---sVSrLIG-aPPGYVGyee-GG~LT---EaVRr~PySViLlDEIEKAHpd 608 (786)
T COG0542 565 ---SVSRLIG-APPGYVGYEE-GGQLT---EAVRRKPYSVILLDEIEKAHPD 608 (786)
T ss_pred ---HHHHHhC-CCCCCceecc-ccchh---HhhhcCCCeEEEechhhhcCHH
Confidence 1222223 2232222222 12222 33367777 7778999766544
No 176
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.47 E-value=2e-05 Score=85.87 Aligned_cols=130 Identities=21% Similarity=0.278 Sum_probs=93.4
Q ss_pred cCCceEEEEEeCCCCCCC---------CCcccC----------------C------CCCCcEEEccCCCCCCCCchhccC
Q 003950 619 AFPNLLEIDIDYCNDLIE---------LPDGLC----------------D------IVSIKKLRITNCHKLSALPEGIGK 667 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~---------lp~~i~----------------~------l~~L~~L~L~~~~~~~~lp~~l~~ 667 (784)
.+.+|++|.|.+|++... +-.-|+ . ...|...++++|. +..+..++.-
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~-L~~mD~SLql 185 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR-LVLMDESLQL 185 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh-HHhHHHHHHH
Confidence 688999999999965421 000011 0 1235555666544 5556667778
Q ss_pred CCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccch-hhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEe
Q 003950 668 LVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPE-RIGELCSLKTLCLKGCSMFELPSSILNLENLEVVK 746 (784)
Q Consensus 668 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~ 746 (784)
++.|+.|+|++|.+... ..+..++.|++|||+.|. +..+|. +...+. |+.|.+++|.++.+ .++.+|.+|+.|+
T Consensus 186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhh--HHHHhcccccccccccch-hccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhccc
Confidence 89999999999877654 378899999999999984 555553 223344 99999999999988 4789999999999
Q ss_pred CCCCchhc
Q 003950 747 CDEETAYQ 754 (784)
Q Consensus 747 l~~~~~~~ 754 (784)
++.|....
T Consensus 261 lsyNll~~ 268 (1096)
T KOG1859|consen 261 LSYNLLSE 268 (1096)
T ss_pred hhHhhhhc
Confidence 99886654
No 177
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00035 Score=77.02 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=90.7
Q ss_pred CCCCCCCchhHHHHHHHH------hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELF------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
.+.+|.++.+++|+++|. .-..++++++|++|+|||+|++.+++ .....|- -++++.-.|..++
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv----R~sLGGvrDEAEI---- 392 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV----RISLGGVRDEAEI---- 392 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE----EEecCccccHHHh----
Confidence 456999999999999997 22358999999999999999999998 5555552 3344443333321
Q ss_pred HHHcCCCCCC--CCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc--------hHHHhhhhccCC-------------C
Q 003950 211 YQHKGYAVPE--FQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS--------ESLLQKFKFQLP-------------Y 267 (784)
Q Consensus 211 ~~~l~~~~~~--~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--------~~~~~~~~~~~~-------------g 267 (784)
.++... ...+.. +-+-++..+.+.-+++||.++... ..+++-+.+..+ =
T Consensus 393 ----RGHRRTYIGamPGr----IiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 393 ----RGHRRTYIGAMPGK----IIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ----ccccccccccCChH----HHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 111000 000111 112222336778899999985432 224444433221 1
Q ss_pred ceEE-EecccccccC-------CCceeccCCCHHHHHHHHHHHh
Q 003950 268 YKIL-VTSRSVFPQF-------GSGYDLKPLNDEAARTLFRYSA 303 (784)
Q Consensus 268 s~ii-vTtR~~~~~~-------~~~~~l~~L~~~~a~~lf~~~a 303 (784)
|.|+ |||-+..... -.++++.+.+++|-.++-+++.
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4444 5555542211 2279999999999888877765
No 178
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.45 E-value=0.00071 Score=70.51 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=66.1
Q ss_pred hHHHHHHHHh-CCcEEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCC-CCHHHHHHHHHHHcCCCCCCCC
Q 003950 146 LQELKLELFK-DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQT-PNVKGIVQKVYQHKGYAVPEFQ 222 (784)
Q Consensus 146 ~~~l~~~L~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~ 222 (784)
..++++.+.. ...+.+.|+|.+|+|||||++.+++ .+.... +..++|+.+.+. .++.++++.+...+.....+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3456666662 3346779999999999999999887 443333 343568888765 4788888888877665432222
Q ss_pred ChH--HHHHHHHHHhccc--CCCcEEEEEeCCC
Q 003950 223 TDE--DAINDLERLLKPI--RPEAILLVLDDVW 251 (784)
Q Consensus 223 ~~~--~~~~~l~~~~~~l--~~kr~LlVlDdv~ 251 (784)
... .....+....+++ ++++++||+|++.
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 111 1111222222222 6999999999983
No 179
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0096 Score=61.70 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=95.2
Q ss_pred hHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccc------------------ccccCCceEEEEeCCCCCHHHH
Q 003950 146 LQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQV------------------LGKFKDNIFFVTVSQTPNVKGI 206 (784)
Q Consensus 146 ~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~------------------~~~f~~~~~wv~~~~~~~~~~~ 206 (784)
.+++...+..+. ...+.+.|+.|+||+++|+.+...--- .+..++ ..|+.-..
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~------- 83 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEK------- 83 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCc-------
Confidence 455666665544 568999999999999999988652100 001122 22222110
Q ss_pred HHHHHHHcCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc--
Q 003950 207 VQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF-- 278 (784)
Q Consensus 207 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~-- 278 (784)
.+..-..+....+.+.+ ....+++-++|+|++...... ++..+....+++.+|++|.+..
T Consensus 84 ------------~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 84 ------------EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRL 151 (319)
T ss_pred ------------CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 00001112222233332 222456678899998766532 6677777677788888777652
Q ss_pred ----ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 279 ----PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 279 ----~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
..-...+.+.+++.+++.+.+.... . . .+..++..++|.|+.+..+
T Consensus 152 LpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~---~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 152 LPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I---T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hHHHHhcceeEeCCCCCHHHHHHHHHHcC----C---c----hHHHHHHHcCCCHHHHHHH
Confidence 2223378999999999988886531 1 0 2457789999999877644
No 180
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.43 E-value=0.0025 Score=75.28 Aligned_cols=44 Identities=27% Similarity=0.294 Sum_probs=36.8
Q ss_pred CCCCCCCchhHHHHHHHH------hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELF------KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..+++|.+++. .....++.++|++|+|||++|+.+++
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 457999999999988775 11345899999999999999999998
No 181
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.42 E-value=0.0008 Score=77.98 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=38.4
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.++||+.++.++++.|......-+.++|.+|+|||++|+.++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999865555667899999999999999986
No 182
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.42 E-value=0.00027 Score=63.68 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 003950 161 IVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 161 v~I~G~~GiGKTtLa~~v~~~ 181 (784)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999983
No 183
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.40 E-value=0.0063 Score=72.41 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=36.3
Q ss_pred CCCCCCCchhHHHHHHHHhC-------C--cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKD-------G--RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~-------~--~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..++.+...+... + ..++.++|+.|+|||++|+.+++
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46789999999998888621 1 24788999999999999999986
No 184
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=0.00013 Score=83.47 Aligned_cols=82 Identities=27% Similarity=0.291 Sum_probs=35.5
Q ss_pred cCCceEEEEEeCCCCCC-CCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCC-CCcccccCCCCCC
Q 003950 619 AFPNLLEIDIDYCNDLI-ELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLS-ALPDTIGNLSNLN 696 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~p~~~~~l~~L~ 696 (784)
.+|+|+.|.+++-.+.. .+-.-..++++|..||+|++. ++.+ .++++|+||+.|.+.+-.+.. ..-..+.+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 45555555555432211 111222345555555555533 3322 445555555555554422221 1112334455555
Q ss_pred EEeccC
Q 003950 697 FLDISE 702 (784)
Q Consensus 697 ~L~l~~ 702 (784)
.||+|.
T Consensus 224 vLDIS~ 229 (699)
T KOG3665|consen 224 VLDISR 229 (699)
T ss_pred eeeccc
Confidence 555554
No 185
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.37 E-value=0.0012 Score=60.01 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=46.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhccc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI 238 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l 238 (784)
..+.|+|++|+||||+|+.++. ...... ..++.+..+........... ....... ............+....+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~-- 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPG-GGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALAR-- 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCC-CCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHH--
Confidence 5789999999999999999988 333332 12556665443322222111 0011111 111112222222222221
Q ss_pred CCCcEEEEEeCCCCCch
Q 003950 239 RPEAILLVLDDVWSGSE 255 (784)
Q Consensus 239 ~~kr~LlVlDdv~~~~~ 255 (784)
..+..+|++|++.....
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 22259999999977653
No 186
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.36 E-value=0.0016 Score=72.95 Aligned_cols=163 Identities=14% Similarity=0.165 Sum_probs=88.7
Q ss_pred CCCCCCCchhHHHHHHHH---h---------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 137 PVTPGLDVPLQELKLELF---K---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
.+++|.+..++++.+.+. . ...+-+.++|++|+|||++|+++++. .. . -++.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~----~--~~~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AG----V--PFFSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cC----C--CeeeccH----H
Confidence 457888887766655443 1 12456899999999999999999873 21 1 1333321 1
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc-----------h---H----HHhhhhc--
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS-----------E---S----LLQKFKF-- 263 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~-----------~---~----~~~~~~~-- 263 (784)
++.... .+ .....++.++ ......+.+|++||++... + . ++..+..
T Consensus 123 ~~~~~~---~g----------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 123 DFVEMF---VG----------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred HHHHHH---hc----------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 111111 00 0112233333 2224567899999984321 0 1 1111111
Q ss_pred cCCCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 264 QLPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 264 ~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
...+-.||.||.... . .....+.++..+.++-.++|..+....... .......+++.+.|.
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~----~~~~l~~la~~t~G~ 259 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA----PDVDLKAVARRTPGF 259 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC----cchhHHHHHHhCCCC
Confidence 122445666665431 1 233478888888888888888766432211 122345788888774
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=7.4e-05 Score=85.56 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCCC-CCCCcccC-CCCCCcEEEccCCCCCC-CCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCE
Q 003950 621 PNLLEIDIDYCNDL-IELPDGLC-DIVSIKKLRITNCHKLS-ALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNF 697 (784)
Q Consensus 621 ~~L~~L~L~~~~~~-~~lp~~i~-~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 697 (784)
.+|+.|++++.... ...|..++ .||+|+.|.+++-.+.. .+-.-..+++||..||+++++. +.+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHHH
Confidence 34555555543221 12233333 35666666665522211 1122234566666666666443 222 55666666666
Q ss_pred EeccCCCCCC-ccchhhhCCCCCCEEeccCCCCCCcCh-------hhhCCCCCCEEeCCCCchhc--HHHHhhcCCCc
Q 003950 698 LDISECLNIQ-ELPERIGELCSLKTLCLKGCSMFELPS-------SILNLENLEVVKCDEETAYQ--WEYFQLGQAKF 765 (784)
Q Consensus 698 L~l~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~lp~-------~l~~l~~L~~L~l~~~~~~~--~~~~~~~lp~L 765 (784)
|.+.+-.+.. ..-..+.+|++|+.||+|......-+. .-..||+|+.|+|++..... .+.+...-|+|
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 6655432221 111234556666666666555332221 11235666666666544322 34444444444
No 188
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.31 E-value=0.001 Score=65.25 Aligned_cols=36 Identities=39% Similarity=0.534 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEe
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 197 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~ 197 (784)
-.++|+|..|.|||||+..+.. .....|.. +++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~-I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDH-IFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCE-EEEEec
Confidence 3688999999999999999987 57778865 766644
No 189
>PRK10536 hypothetical protein; Provisional
Probab=97.29 E-value=0.00097 Score=65.77 Aligned_cols=131 Identities=11% Similarity=0.113 Sum_probs=73.5
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeC-----CC--C---CHH--
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS-----QT--P---NVK-- 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~-----~~--~---~~~-- 204 (784)
..+.++......+..++.+. .+|.+.|.+|.|||+||.++..+.-..+.|.. + .+.=+ +. + +..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~k-I-iI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDR-I-IVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeE-E-EEeCCCCCchhhhCcCCCCHHHH
Confidence 44577888888888888753 49999999999999999998764222344543 3 33211 10 0 111
Q ss_pred --HHHHHHHHHcCCCCCCCCChHHHHHHH-H---HHh-----cccCCCcE---EEEEeCCCCCchHHHhh-hhccCCCce
Q 003950 205 --GIVQKVYQHKGYAVPEFQTDEDAINDL-E---RLL-----KPIRPEAI---LLVLDDVWSGSESLLQK-FKFQLPYYK 269 (784)
Q Consensus 205 --~~~~~i~~~l~~~~~~~~~~~~~~~~l-~---~~~-----~~l~~kr~---LlVlDdv~~~~~~~~~~-~~~~~~gs~ 269 (784)
..+.-+.+.+..-. .. ...+.+ . ..+ .+++++.+ +||+|++.+........ +...+.+|+
T Consensus 131 ~~p~~~pi~D~L~~~~----~~-~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk 205 (262)
T PRK10536 131 FAPYFRPVYDVLVRRL----GA-SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVT 205 (262)
T ss_pred HHHHHHHHHHHHHHHh----Ch-HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCE
Confidence 11222222221100 00 011111 0 001 34466655 99999998877553433 345568999
Q ss_pred EEEeccc
Q 003950 270 ILVTSRS 276 (784)
Q Consensus 270 iivTtR~ 276 (784)
+|+|--.
T Consensus 206 ~v~~GD~ 212 (262)
T PRK10536 206 VIVNGDI 212 (262)
T ss_pred EEEeCCh
Confidence 9998543
No 190
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0032 Score=63.92 Aligned_cols=173 Identities=18% Similarity=0.286 Sum_probs=98.6
Q ss_pred CCCCCCchhHHHHHHHH----h---------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 138 VTPGLDVPLQELKLELF----K---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
.+=|.++++++|.+... . +.++-|.+||++|.|||-||++|++ +.... |+.|..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~At------FIrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDAT------FIRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCce------EEEeccH----
Confidence 35588888999888765 1 2367899999999999999999999 33333 4444221
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCc----------h--------HHHhhhhccC
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGS----------E--------SLLQKFKFQL 265 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~----------~--------~~~~~~~~~~ 265 (784)
++.++.+ | +....++++++.. ...++.|.+|.++... + .++..+..+.
T Consensus 220 ElVqKYi---G----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 ELVQKYI---G----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred HHHHHHh---c----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 2222221 1 1123334444211 4678999999884211 1 1344444443
Q ss_pred C--CceEEEeccccc---------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch----h
Q 003950 266 P--YYKILVTSRSVF---------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP----L 330 (784)
Q Consensus 266 ~--gs~iivTtR~~~---------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P----L 330 (784)
+ .-|||..|.... ...+..++++.-+.+.-.++|.-++..-.-..... .+.+++.|.|.- -
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlk 362 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLK 362 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHH
Confidence 3 468888886541 12333677875555555667776665444322232 344555666553 3
Q ss_pred HHHHHHhhh
Q 003950 331 ALTVVGGSL 339 (784)
Q Consensus 331 ai~~~~~~L 339 (784)
|+-+=|+++
T Consensus 363 aictEAGm~ 371 (406)
T COG1222 363 AICTEAGMF 371 (406)
T ss_pred HHHHHHhHH
Confidence 444445554
No 191
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.24 E-value=0.0037 Score=58.34 Aligned_cols=116 Identities=15% Similarity=0.241 Sum_probs=68.3
Q ss_pred CCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccc---ccc---------------cccCCceEEEEeCCC-
Q 003950 141 GLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDD---QVL---------------GKFKDNIFFVTVSQT- 200 (784)
Q Consensus 141 Gr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~---~~~---------------~~f~~~~~wv~~~~~- 200 (784)
|-+..++.+...+..+. ...+.++|..|+||+++|..+++.- ... ...+. +.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEeccccc
Confidence 44556667777777655 4568999999999999999886521 000 12333 434443222
Q ss_pred --CCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEec
Q 003950 201 --PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTS 274 (784)
Q Consensus 201 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTt 274 (784)
...+++ +.+.+.+.. ....+++=++|+|++...... ++..+-....++.+|++|
T Consensus 80 ~~i~i~~i-r~i~~~~~~-------------------~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t 139 (162)
T PF13177_consen 80 KSIKIDQI-REIIEFLSL-------------------SPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILIT 139 (162)
T ss_dssp SSBSHHHH-HHHHHHCTS-------------------S-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred chhhHHHH-HHHHHHHHH-------------------HHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 122222 233333222 222467789999999876533 666666667789999999
Q ss_pred ccc
Q 003950 275 RSV 277 (784)
Q Consensus 275 R~~ 277 (784)
.+.
T Consensus 140 ~~~ 142 (162)
T PF13177_consen 140 NNP 142 (162)
T ss_dssp S-G
T ss_pred CCh
Confidence 876
No 192
>CHL00176 ftsH cell division protein; Validated
Probab=97.22 E-value=0.0042 Score=70.77 Aligned_cols=162 Identities=15% Similarity=0.197 Sum_probs=91.5
Q ss_pred CCCCCCCchhHHHHHHHH---hC---------CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 137 PVTPGLDVPLQELKLELF---KD---------GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~---~~---------~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
.+++|.++.++++.+.+. .. ..+-|.++|++|+|||+||++++.. .. +-++.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~------~p~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AE------VPFFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC------CCeeeccHH----
Confidence 457898887776665543 11 1456999999999999999999873 21 113333211
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc-----------h---HHHhhhh----c--
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS-----------E---SLLQKFK----F-- 263 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~-----------~---~~~~~~~----~-- 263 (784)
++.... .+ .....++.++ ......+++|++||++... . ..+..+. .
T Consensus 251 ~f~~~~---~g----------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 251 EFVEMF---VG----------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred HHHHHh---hh----------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 111100 00 0112333334 2235778999999995321 1 1122221 1
Q ss_pred cCCCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCC
Q 003950 264 QLPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKG 327 (784)
Q Consensus 264 ~~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g 327 (784)
...+-.||.||.... . ..+..+.++..+.++-.++++.++..... ........+++.+.|
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPG 386 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCC
Confidence 123456666665531 1 12347788888888888898877644221 123345677888777
No 193
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.22 E-value=6.3e-05 Score=72.62 Aligned_cols=193 Identities=17% Similarity=0.105 Sum_probs=91.1
Q ss_pred hhccCCCCCcEEEeecccccCCcCcCc-cccCCCCCCCEEEecccCCCCcc----------------ccccccCceeeee
Q 003950 539 KFLEKMDKLKVMIVTNYGFFPAELSNI-QVFGALSNLKRIRLEHVSLPSLT----------------TVRMKHLQNVSLV 601 (784)
Q Consensus 539 ~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~l~~L~~L~L~~n~l~~~~----------------~~~l~~L~~L~l~ 601 (784)
+.+-+|++|+..++++|.+.|.....+ ..+++-.+|.+|.+++|.+..+. ...-+.|++....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 455667777777777765544333222 12455666777777777654431 1122344444444
Q ss_pred eccccccccCccccccccCCceEEEEEeCCCCCCC-----CCcccCCCCCCcEEEccCCCCCCC----CchhccCCCCCC
Q 003950 602 MCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIE-----LPDGLCDIVSIKKLRITNCHKLSA----LPEGIGKLVNLQ 672 (784)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~ 672 (784)
.|.+...........+..-.+|+.+.+..|.+-.+ +...+..+++|+.|||..|+++.. +...++..+.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 44332221111111111224666666666543221 011223355666666666654422 223344555666
Q ss_pred EEEeecCCCCCCCcccc------cCCCCCCEEeccCCCCCCc------cchh-hhCCCCCCEEeccCCCCCC
Q 003950 673 MLTLASCTDLSALPDTI------GNLSNLNFLDISECLNIQE------LPER-IGELCSLKTLCLKGCSMFE 731 (784)
Q Consensus 673 ~L~L~~~~~~~~~p~~~------~~l~~L~~L~l~~n~~~~~------~p~~-l~~l~~L~~L~l~~n~l~~ 731 (784)
.|.+..|-....-..++ ...++|..|....|..-+. +|.. -++++-|..|.+.+|.+.+
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 66666665433222111 1235555555555533221 1111 1345666666666666653
No 194
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.21 E-value=0.014 Score=69.80 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=37.3
Q ss_pred CCCCCCCchhHHHHHHHHhC---------CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKD---------GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..++.+...+... ...++.++|++|+|||++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999998731 135788999999999999999987
No 195
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.21 E-value=0.0041 Score=67.18 Aligned_cols=126 Identities=21% Similarity=0.209 Sum_probs=74.3
Q ss_pred hHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChH
Q 003950 146 LQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDE 225 (784)
Q Consensus 146 ~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 225 (784)
+.++.+.+..... ++.|.|+-++||||+++.+.. . +...++++..-+......-+.+..
T Consensus 26 ~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~--~----~~~~~iy~~~~d~~~~~~~l~d~~-------------- 84 (398)
T COG1373 26 LPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIK--G----LLEEIIYINFDDLRLDRIELLDLL-------------- 84 (398)
T ss_pred hHHHHhhcccCCc-EEEEECCccccHHHHHHHHHh--h----CCcceEEEEecchhcchhhHHHHH--------------
Confidence 3444444433333 999999999999999976665 2 222133554432211111111111
Q ss_pred HHHHHHHHHhcccCCCcEEEEEeCCCCCchH--HHhhhhccCCCceEEEeccccc----------ccCCCceeccCCCHH
Q 003950 226 DAINDLERLLKPIRPEAILLVLDDVWSGSES--LLQKFKFQLPYYKILVTSRSVF----------PQFGSGYDLKPLNDE 293 (784)
Q Consensus 226 ~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~--~~~~~~~~~~gs~iivTtR~~~----------~~~~~~~~l~~L~~~ 293 (784)
..+.... ..++..|+||.|....+| .+..+....+. +|++|+-+.. .+-...+.+.||+-.
T Consensus 85 ---~~~~~~~---~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 85 ---RAYIELK---EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred ---HHHHHhh---ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 1111111 228899999999988877 44555555555 7888877651 223347899999999
Q ss_pred HHHHHH
Q 003950 294 AARTLF 299 (784)
Q Consensus 294 ~a~~lf 299 (784)
|-..+-
T Consensus 158 Efl~~~ 163 (398)
T COG1373 158 EFLKLK 163 (398)
T ss_pred HHHhhc
Confidence 876653
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.20 E-value=0.0073 Score=61.47 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHH
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 207 (784)
.-|.+.|.+|+|||++|+.+.. .. ....+.+++....+..+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~l----g~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KR----DRPVMLINGDAELTTSDLV 64 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--Hh----CCCEEEEeCCccCCHHHHh
Confidence 4567899999999999999986 22 2334466666655555544
No 197
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.16 E-value=0.0079 Score=62.21 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+..++|||++|.|||.+|+++++
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHH
Confidence 368899999999999999999998
No 198
>PRK08118 topology modulation protein; Reviewed
Probab=97.12 E-value=0.00023 Score=66.82 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=26.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccc-cccCCceEE
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFF 194 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~w 194 (784)
+.|.|+|++|+||||||+.+++...+. -+|+. ++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~-l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA-LFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch-hhc
Confidence 358999999999999999999843333 34554 544
No 199
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.11 E-value=0.00038 Score=63.43 Aligned_cols=85 Identities=20% Similarity=0.302 Sum_probs=49.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCC
Q 003950 161 IVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRP 240 (784)
Q Consensus 161 v~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 240 (784)
|.++|.+|+|||+||+.+++ .. ...++-+.++...+..+++...--. .. .. ...+ ..+-..-.
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g~~~~~-~~---~~-~~~~------~~l~~a~~ 64 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIGSYDPS-NG---QF-EFKD------GPLVRAMR 64 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHCEEET--TT---TT-CEEE-------CCCTTHH
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh----hcceEEEEeccccccccceeeeeec-cc---cc-cccc------cccccccc
Confidence 67999999999999999997 33 4445567778877777765422211 00 00 0000 00000012
Q ss_pred CcEEEEEeCCCCCchHHHhhhh
Q 003950 241 EAILLVLDDVWSGSESLLQKFK 262 (784)
Q Consensus 241 kr~LlVlDdv~~~~~~~~~~~~ 262 (784)
+..++|||++......++..+.
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~ 86 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLL 86 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTH
T ss_pred ceeEEEECCcccCCHHHHHHHH
Confidence 7899999999876655555543
No 200
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.11 E-value=0.0012 Score=66.25 Aligned_cols=93 Identities=13% Similarity=0.164 Sum_probs=58.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC-CHHHHHHHHHHHcCC-------CCCCCCChH---
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGY-------AVPEFQTDE--- 225 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~--- 225 (784)
.-+.++|.|.+|+||||||+.+++ .++.+|+..++++-+++.. ...++.+.+...-.. ...+.+...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 356899999999999999999998 6666777767788887765 456666666543111 001111111
Q ss_pred --HHHHHHHHHhcccCCCcEEEEEeCCC
Q 003950 226 --DAINDLERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 226 --~~~~~l~~~~~~l~~kr~LlVlDdv~ 251 (784)
...-.+.+.+..-+++.+|+++||+.
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 11112333332114999999999984
No 201
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.10 E-value=0.017 Score=68.68 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=36.8
Q ss_pred CCCCCCCchhHHHHHHHHh-------C--CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFK-------D--GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..++.+.+.+.. . ...++.++|++|+|||.||+++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5679999999999998861 1 235789999999999999999876
No 202
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.10 E-value=0.055 Score=57.30 Aligned_cols=193 Identities=17% Similarity=0.212 Sum_probs=115.9
Q ss_pred CCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHH-HHHhcccccccccCCceEEEEeCCC---CCHHHHHHHHHHHcCCC
Q 003950 142 LDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLV-KKLCKDDQVLGKFKDNIFFVTVSQT---PNVKGIVQKVYQHKGYA 217 (784)
Q Consensus 142 r~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~~wv~~~~~---~~~~~~~~~i~~~l~~~ 217 (784)
|.+.+++|..||....-..|.|.|+-|.||+.|+ .++.++. +. ++.+++.+. .+-..++..++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r------~~-vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR------KN-VLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC------CC-EEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5678899999999888889999999999999999 6666532 22 567776432 34456666666666532
Q ss_pred C-----------------------CCCCC-hH-HHH-------HHHHHHh----------------ccc---CCCcEEEE
Q 003950 218 V-----------------------PEFQT-DE-DAI-------NDLERLL----------------KPI---RPEAILLV 246 (784)
Q Consensus 218 ~-----------------------~~~~~-~~-~~~-------~~l~~~~----------------~~l---~~kr~LlV 246 (784)
+ .+... .+ +.. ..|+.+- +++ ..++-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 11111 11 111 1111111 000 12367899
Q ss_pred EeCCCCCch---HHHhhhh------ccCCCceEEEeccccc--------c--cCCCceeccCCCHHHHHHHHHHHhccCC
Q 003950 247 LDDVWSGSE---SLLQKFK------FQLPYYKILVTSRSVF--------P--QFGSGYDLKPLNDEAARTLFRYSANLQD 307 (784)
Q Consensus 247 lDdv~~~~~---~~~~~~~------~~~~gs~iivTtR~~~--------~--~~~~~~~l~~L~~~~a~~lf~~~a~~~~ 307 (784)
+|+.-...+ .+.+.+. ...+=..||++|-+.. . ..-..+.|...+++.|.++...+.....
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~ 233 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDT 233 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccc
Confidence 999854331 1222222 2233468888887761 1 1123788999999999999988775431
Q ss_pred CC------------CC-----CcCHHHHHHHHHHcCCchhHHHHHHhhhCC
Q 003950 308 GN------------SY-----IPDENLVNKILRACKGCPLALTVVGGSLCG 341 (784)
Q Consensus 308 ~~------------~~-----~~~~~~~~~i~~~~~g~PLai~~~~~~L~~ 341 (784)
.. .. ..........++..||=-.=+..+++.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 234 EDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 10 00 123445566777788877777777777653
No 203
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.00045 Score=67.78 Aligned_cols=206 Identities=13% Similarity=0.077 Sum_probs=119.7
Q ss_pred cCCCCCcEEEeecccccC-CcCcCccccCCCCCCCEEEecccCCCCc---cccccccCceeeeeeccccccccCcccccc
Q 003950 542 EKMDKLKVMIVTNYGFFP-AELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNVDQVVQNSTFHFS 617 (784)
Q Consensus 542 ~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 617 (784)
...+.++.|++.+|.+.. +++ ...+.+++.|+.|+++.|.+... .+...++|++|-+.+..+..... ..+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI--~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~---~s~l 142 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEI--GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS---TSSL 142 (418)
T ss_pred HHhhhhhhhhcccchhccHHHH--HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh---hhhh
Confidence 457778888888764321 111 12256788888888888887664 22466788888877765543222 1223
Q ss_pred ccCCceEEEEEeCCCCCCC--CCcccCCC-CCCcEEEccCCCCCCC--CchhccCCCCCCEEEeecCCCCC-CCcccccC
Q 003950 618 DAFPNLLEIDIDYCNDLIE--LPDGLCDI-VSIKKLRITNCHKLSA--LPEGIGKLVNLQMLTLASCTDLS-ALPDTIGN 691 (784)
Q Consensus 618 ~~l~~L~~L~L~~~~~~~~--lp~~i~~l-~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~L~~~~~~~-~~p~~~~~ 691 (784)
..+|.++.|.++.|+.-.. -.+.+... +.+++|.+.+|....- .-.--.-++|+..+.+..|++-. ........
T Consensus 143 ~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~ 222 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEP 222 (418)
T ss_pred hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCC
Confidence 4667777777777632111 01111111 2344444444421100 00001235777778887775533 22345566
Q ss_pred CCCCCEEeccCCCCCCc-cchhhhCCCCCCEEeccCCCCCC-c----C--hhhhCCCCCCEEeCCCCch
Q 003950 692 LSNLNFLDISECLNIQE-LPERIGELCSLKTLCLKGCSMFE-L----P--SSILNLENLEVVKCDEETA 752 (784)
Q Consensus 692 l~~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~l~~n~l~~-l----p--~~l~~l~~L~~L~l~~~~~ 752 (784)
++.+..|+|+.+++-.. --+.+.++++|..|.++++++.+ + + --+++|+++++|+-+..+.
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss 291 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISS 291 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccch
Confidence 77788888888754321 12467889999999999999751 1 2 2358899999998764433
No 204
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.06 E-value=0.033 Score=61.95 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=56.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 237 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 237 (784)
-++..++|++|+||||||+.++++. .| +++=+++|+..+...+-..|...+...... -
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa----GY--sVvEINASDeRt~~~v~~kI~~avq~~s~l----------------~ 383 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA----GY--SVVEINASDERTAPMVKEKIENAVQNHSVL----------------D 383 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc----Cc--eEEEecccccccHHHHHHHHHHHHhhcccc----------------c
Confidence 5799999999999999999998732 33 466888999888888877777665432110 0
Q ss_pred cCCCcEEEEEeCCCCCc
Q 003950 238 IRPEAILLVLDDVWSGS 254 (784)
Q Consensus 238 l~~kr~LlVlDdv~~~~ 254 (784)
..+++.-+|+|.++-..
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 13788889999997665
No 205
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.04 E-value=0.026 Score=67.28 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=35.8
Q ss_pred CCCCCCCchhHHHHHHHHhC-------C--cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKD-------G--RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~-------~--~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|-+..++.+...+... + ...+.++|+.|+|||+||+.+++
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 46799999999998888621 1 34577999999999999999986
No 206
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.00035 Score=68.55 Aligned_cols=166 Identities=7% Similarity=0.060 Sum_probs=70.5
Q ss_pred cccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCC-CCchhccCCCC
Q 003950 592 MKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLS-ALPEGIGKLVN 670 (784)
Q Consensus 592 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~ 670 (784)
...++.|++.+|.+..... ...+...+|.|++|+|+.|++...+-..-..+.+|+.|-|.+..+.. .....+..+|.
T Consensus 70 ~~~v~elDL~~N~iSdWse--I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSE--IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchhccHHH--HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4455555665555443211 12233356666666666665433221100234466666665433221 12233445566
Q ss_pred CCEEEeecCCCCCC--CcccccCC-CCCCEEeccCCCCCCc--cchhhhCCCCCCEEeccCCCCCCcC--hhhhCCCCCC
Q 003950 671 LQMLTLASCTDLSA--LPDTIGNL-SNLNFLDISECLNIQE--LPERIGELCSLKTLCLKGCSMFELP--SSILNLENLE 743 (784)
Q Consensus 671 L~~L~L~~~~~~~~--~p~~~~~l-~~L~~L~l~~n~~~~~--~p~~l~~l~~L~~L~l~~n~l~~lp--~~l~~l~~L~ 743 (784)
++.|.++.|+.-.. -...+... +.+++|.+.+|..... ...--.-++++..+-+..|++.... .....++.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 66666665532100 00011111 1233343333321110 0000012355555566666555332 2334455555
Q ss_pred EEeCCCCchhcHHHHh
Q 003950 744 VVKCDEETAYQWEYFQ 759 (784)
Q Consensus 744 ~L~l~~~~~~~~~~~~ 759 (784)
.|+++.+....|.++.
T Consensus 228 ~LnL~~~~idswasvD 243 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVD 243 (418)
T ss_pred hhhhcccccccHHHHH
Confidence 6666666666665443
No 207
>PRK04132 replication factor C small subunit; Provisional
Probab=97.03 E-value=0.015 Score=67.84 Aligned_cols=146 Identities=15% Similarity=0.181 Sum_probs=92.8
Q ss_pred Ec--CCCCcHHHHHHHHhccccc-ccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhccc-C
Q 003950 164 SA--PGGYGKTTLVKKLCKDDQV-LGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI-R 239 (784)
Q Consensus 164 ~G--~~GiGKTtLa~~v~~~~~~-~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l-~ 239 (784)
.| +.++||||+|.++++ ++ .+.+...++-++.++...... ++++++.+.... .+ .
T Consensus 570 ~G~lPh~lGKTT~A~ala~--~l~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~------------------~~~~ 628 (846)
T PRK04132 570 GGNLPTVLHNTTAALALAR--ELFGENWRHNFLELNASDERGINV-IREKVKEFARTK------------------PIGG 628 (846)
T ss_pred cCCCCCcccHHHHHHHHHH--hhhcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcC------------------CcCC
Confidence 37 788999999999998 33 233444456777776545443 334333321110 01 2
Q ss_pred CCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCC
Q 003950 240 PEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGN 309 (784)
Q Consensus 240 ~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~ 309 (784)
.+.-++|+|+++..... ++..+......+++|++|.+.. ...+..+.+.+++.++-.+.+.+.+...+.
T Consensus 629 ~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi- 707 (846)
T PRK04132 629 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL- 707 (846)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-
Confidence 35679999999887643 3333443445678887777652 222348999999999988888776643332
Q ss_pred CCCcCHHHHHHHHHHcCCchhHHH
Q 003950 310 SYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 310 ~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
.-.++....|++.++|.+-.+.
T Consensus 708 --~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 708 --ELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHH
Confidence 1136788999999999885444
No 208
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.00 E-value=0.019 Score=67.59 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=61.3
Q ss_pred CCCCCCCchhHHHHHHHHh------C---CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHH
Q 003950 137 PVTPGLDVPLQELKLELFK------D---GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~------~---~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 207 (784)
..++|.+..++.+...+.. + ...++.++|++|+|||+||+.++. .. ....+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l----~~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL----GVHLERFDMSEYMEKHT-- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh----cCCeEEEeCchhhhccc--
Confidence 4679999999999888872 1 134688999999999999999987 33 22244666554322111
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH
Q 003950 208 QKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES 256 (784)
Q Consensus 208 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~ 256 (784)
+...++.+ +.-... +....+.+.++ .....+|+||++......
T Consensus 526 --~~~lig~~-~gyvg~-~~~~~l~~~~~--~~p~~VvllDEieka~~~ 568 (731)
T TIGR02639 526 --VSRLIGAP-PGYVGF-EQGGLLTEAVR--KHPHCVLLLDEIEKAHPD 568 (731)
T ss_pred --HHHHhcCC-CCCccc-chhhHHHHHHH--hCCCeEEEEechhhcCHH
Confidence 11112221 111111 11122333332 234569999999766543
No 209
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.99 E-value=0.0073 Score=66.52 Aligned_cols=165 Identities=12% Similarity=0.116 Sum_probs=85.7
Q ss_pred CCCCCCCchhHHHHHHHH-------h---CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHH
Q 003950 137 PVTPGLDVPLQELKLELF-------K---DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGI 206 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~-------~---~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~ 206 (784)
..+.|.+..++.+.+... . ...+-|.++|++|+|||.+|+++++ .. ....+-++.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~--e~----~~~~~~l~~~~------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN--DW----QLPLLRLDVGK------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--Hh----CCCEEEEEhHH-------
Confidence 456777666555544221 1 1256799999999999999999987 32 22222333221
Q ss_pred HHHHHHHcCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCCc-------h--H---H----HhhhhccCCCce
Q 003950 207 VQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSGS-------E--S---L----LQKFKFQLPYYK 269 (784)
Q Consensus 207 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~-------~--~---~----~~~~~~~~~gs~ 269 (784)
+..... .+....++++++ .-...+++|++|+++... + . + +..+.....+--
T Consensus 295 ---l~~~~v---------Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~ 362 (489)
T CHL00195 295 ---LFGGIV---------GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVF 362 (489)
T ss_pred ---hccccc---------ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceE
Confidence 111000 001122333331 113578999999985311 0 0 1 222222223344
Q ss_pred EEEeccccc---------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 270 ILVTSRSVF---------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 270 iivTtR~~~---------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
||.||.... ...+..+.++.-+.++-.++|..+........ ........+++.+.|.
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~--~~~~dl~~La~~T~Gf 428 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS--WKKYDIKKLSKLSNKF 428 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc--ccccCHHHHHhhcCCC
Confidence 666776541 12334678888888988999987764432110 0012245566666554
No 210
>PRK08181 transposase; Validated
Probab=96.99 E-value=0.0021 Score=64.95 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=54.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 236 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 236 (784)
...-+.++|++|+|||.||.++.+ ...... ..++++++ .+++..+..+... ......+..+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~--~a~~~g-~~v~f~~~------~~L~~~l~~a~~~--------~~~~~~l~~l-- 165 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGL--ALIENG-WRVLFTRT------TDLVQKLQVARRE--------LQLESAIAKL-- 165 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHH--HHHHcC-CceeeeeH------HHHHHHHHHHHhC--------CcHHHHHHHH--
Confidence 345699999999999999999987 333221 23556653 4555555433210 0111112221
Q ss_pred ccCCCcEEEEEeCCCCCc--hH----HHhhhhccCCCceEEEecccc
Q 003950 237 PIRPEAILLVLDDVWSGS--ES----LLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~~--~~----~~~~~~~~~~gs~iivTtR~~ 277 (784)
.+.=|||+||+.... ++ +..-+...-.+..+||||...
T Consensus 166 ---~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 ---DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ---hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 234599999995432 11 222232222234699999864
No 211
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.00054 Score=66.53 Aligned_cols=63 Identities=30% Similarity=0.292 Sum_probs=29.0
Q ss_pred CCCCCCEEEeecC--CCCCCCcccccCCCCCCEEeccCCCCC--CccchhhhCCCCCCEEeccCCCCC
Q 003950 667 KLVNLQMLTLASC--TDLSALPDTIGNLSNLNFLDISECLNI--QELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 667 ~l~~L~~L~L~~~--~~~~~~p~~~~~l~~L~~L~l~~n~~~--~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
.|++|++|.++.| ...+.++.....+++|++|++++|.+. ..++ .+..+.+|..|++++|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCcc
Confidence 3455555555554 333344444444455555555555322 1111 1334455555555555544
No 212
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.97 E-value=0.077 Score=52.14 Aligned_cols=222 Identities=13% Similarity=0.085 Sum_probs=123.2
Q ss_pred CCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccc---cc-ccccCCceEEEE----------eCCCC--
Q 003950 138 VTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDD---QV-LGKFKDNIFFVT----------VSQTP-- 201 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~-~~~f~~~~~wv~----------~~~~~-- 201 (784)
.+.++++....+......++.+-..++|++|.||-|.+..+.+.- .+ +-+-+.+. |.+ ++...
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t-~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT-FTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE-EecCCCceEEEEEecccceE
Confidence 356777777777666666678999999999999999887766520 00 00111111 221 11111
Q ss_pred ---------CHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcE-EEEEeCCCCCchH----HHhhhhccCCC
Q 003950 202 ---------NVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAI-LLVLDDVWSGSES----LLQKFKFQLPY 267 (784)
Q Consensus 202 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~-LlVlDdv~~~~~~----~~~~~~~~~~g 267 (784)
..+-+.++|++.+....+- +.-..+.| ++|+-.++....+ +......-...
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qi---------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQI---------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcch---------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 1233555555554432110 00023334 4455555433311 33333334456
Q ss_pred ceEEEecccccc------cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhC-
Q 003950 268 YKILVTSRSVFP------QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLC- 340 (784)
Q Consensus 268 s~iivTtR~~~~------~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~- 340 (784)
+|+|+...+... ...-.++++..+++|-...++..+-..+-.. ..+++.+|+++++|.---...+--..+
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l---p~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL---PKELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC---cHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 787776554321 1222688999999999999988775554321 278999999999997532222222221
Q ss_pred ------CC----ChHHHHHHHHhhcccCcccCChHHHHHHHHHHHHhc
Q 003950 341 ------GK----HPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDAL 378 (784)
Q Consensus 341 ------~~----~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L 378 (784)
.+ ...+|+..+.+..+.....+....+.++-..=|+-|
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 11 256899888776543333334455566656666655
No 213
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0024 Score=64.33 Aligned_cols=76 Identities=25% Similarity=0.328 Sum_probs=50.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 236 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 236 (784)
+..-+.++|.+|+|||.||.++.+ ++. ....++.++++ .+++.++....... .....+.+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~-~~g~sv~f~~~------~el~~~Lk~~~~~~--------~~~~~l~~~l- 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN--ELL-KAGISVLFITA------PDLLSKLKAAFDEG--------RLEEKLLREL- 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHH-HcCCeEEEEEH------HHHHHHHHHHHhcC--------chHHHHHHHh-
Confidence 567899999999999999999999 555 44455667765 55666666654321 1122333322
Q ss_pred ccCCCcEEEEEeCCCCC
Q 003950 237 PIRPEAILLVLDDVWSG 253 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~ 253 (784)
.+-=||||||+...
T Consensus 166 ---~~~dlLIiDDlG~~ 179 (254)
T COG1484 166 ---KKVDLLIIDDIGYE 179 (254)
T ss_pred ---hcCCEEEEecccCc
Confidence 23348999999653
No 214
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.96 E-value=0.0013 Score=62.36 Aligned_cols=99 Identities=21% Similarity=0.342 Sum_probs=51.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 236 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 236 (784)
...-+.++|.+|+|||.||.++.+. -+...+ .+.++++ .+++..+-..-. . ....+.+..+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~-~~~~g~--~v~f~~~------~~L~~~l~~~~~----~----~~~~~~~~~l~- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANE-AIRKGY--SVLFITA------SDLLDELKQSRS----D----GSYEELLKRLK- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHH-HHHTT----EEEEEH------HHHHHHHHCCHC----C----TTHCHHHHHHH-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHH-hccCCc--ceeEeec------Cceecccccccc----c----cchhhhcCccc-
Confidence 4567999999999999999999873 222233 3557764 445555432211 0 11112233322
Q ss_pred ccCCCcEEEEEeCCCCCc--hH----HHhhhhccCCCceEEEecccc
Q 003950 237 PIRPEAILLVLDDVWSGS--ES----LLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~~--~~----~~~~~~~~~~gs~iivTtR~~ 277 (784)
+-=||||||+.... ++ +..-+...-....+||||...
T Consensus 108 ----~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 108 ----RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp ----TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred ----cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 23478899996543 22 111111111123688899754
No 215
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.96 E-value=0.011 Score=69.19 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=38.0
Q ss_pred CCCCCCCchhHHHHHHHHh------CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFK------DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|.+..+++|.++|.. ....++.++|++|+||||+|+.++.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5579999999999988872 2356899999999999999999987
No 216
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.91 E-value=0.0013 Score=61.17 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=60.8
Q ss_pred CCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCC--ccchhhhCCCCCCEEe
Q 003950 646 SIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQ--ELPERIGELCSLKTLC 723 (784)
Q Consensus 646 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~~p~~l~~l~~L~~L~ 723 (784)
+...+||++|. +..++ .+..++.|.+|.+.+|.++..-|.--.-+++|+.|.|.+|++.. .+ ..+..+++|++|.
T Consensus 43 ~~d~iDLtdNd-l~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccc-hhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceee
Confidence 34455666544 22222 34456666677766666655555444455667777777664322 11 1245677788888
Q ss_pred ccCCCCCCcC----hhhhCCCCCCEEeCCCCch
Q 003950 724 LKGCSMFELP----SSILNLENLEVVKCDEETA 752 (784)
Q Consensus 724 l~~n~l~~lp----~~l~~l~~L~~L~l~~~~~ 752 (784)
+-+|++++-+ -.+..+++|+.|+...-+.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 8787776433 2356778888887765544
No 217
>PRK12377 putative replication protein; Provisional
Probab=96.91 E-value=0.005 Score=61.46 Aligned_cols=100 Identities=19% Similarity=0.252 Sum_probs=55.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 236 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 236 (784)
+...+.++|.+|+|||+||.++++ .+....- .+.++++ .+++..+-...... ......+..
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~-~v~~i~~------~~l~~~l~~~~~~~-------~~~~~~l~~--- 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGN--RLLAKGR-SVIVVTV------PDVMSRLHESYDNG-------QSGEKFLQE--- 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHcCC-CeEEEEH------HHHHHHHHHHHhcc-------chHHHHHHH---
Confidence 456899999999999999999998 4433322 2556654 34555554443210 011111222
Q ss_pred ccCCCcEEEEEeCCCCC--chH---HHhhhhcc--CCCceEEEecccc
Q 003950 237 PIRPEAILLVLDDVWSG--SES---LLQKFKFQ--LPYYKILVTSRSV 277 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~--~~~---~~~~~~~~--~~gs~iivTtR~~ 277 (784)
+ .+.-|||+||+... .++ .+-.+... ...--+||||...
T Consensus 161 -l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 161 -L-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred -h-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 2 35669999999433 222 12222111 1234578888643
No 218
>PRK06921 hypothetical protein; Provisional
Probab=96.88 E-value=0.0052 Score=62.43 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=29.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEe
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 197 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~ 197 (784)
....+.++|.+|+|||+||.++++ .+.......+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 457799999999999999999998 444432233557664
No 219
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.87 E-value=0.0014 Score=60.89 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=42.4
Q ss_pred CCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCC--CCCCcccCCCCCCcEE
Q 003950 574 LKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDL--IELPDGLCDIVSIKKL 650 (784)
Q Consensus 574 L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~~lp~~i~~l~~L~~L 650 (784)
...++|++|.+-.+ .+..++.|.+|.+.+|.+..+.+.... .+++|..|.|.+|++. +.+-. +..+++|++|
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~----~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~L 118 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT----FLPNLKTLILTNNSIQELGDLDP-LASCPKLEYL 118 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhh----hccccceEEecCcchhhhhhcch-hccCCcccee
Confidence 33444444444333 233444444444444444443332221 3445555555554331 11211 3445555555
Q ss_pred EccCCCCCCCC---chhccCCCCCCEEEeec
Q 003950 651 RITNCHKLSAL---PEGIGKLVNLQMLTLAS 678 (784)
Q Consensus 651 ~L~~~~~~~~l---p~~l~~l~~L~~L~L~~ 678 (784)
.+-+|.....- -..+.++++|++||+.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 55554322110 01244556666666543
No 220
>PRK07261 topology modulation protein; Provisional
Probab=96.86 E-value=0.0029 Score=59.74 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|.|+|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 221
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.86 E-value=0.022 Score=54.71 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=59.8
Q ss_pred CCCCCCCCchhHHHHHHHH----hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVY 211 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~ 211 (784)
-..++|.+...+.+++--. .-...-|.+||.-|+|||+|++++.+ .+.+.... .|.|... ++ .-+-.|+
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr---LVEV~k~-dl-~~Lp~l~ 131 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR---LVEVDKE-DL-ATLPDLV 131 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe---EEEEcHH-HH-hhHHHHH
Confidence 3567999998888876544 33457799999999999999999998 66666654 4555322 00 0111222
Q ss_pred HHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc
Q 003950 212 QHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS 254 (784)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~ 254 (784)
+.+. ...+||.|..||..-+.
T Consensus 132 ~~Lr----------------------~~~~kFIlFcDDLSFe~ 152 (287)
T COG2607 132 ELLR----------------------ARPEKFILFCDDLSFEE 152 (287)
T ss_pred HHHh----------------------cCCceEEEEecCCCCCC
Confidence 2211 15789999999996544
No 222
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.86 E-value=0.0011 Score=68.74 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=39.3
Q ss_pred CCCCCCCchhHHHHHHHHh------CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 137 PVTPGLDVPLQELKLELFK------DGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
..++|.++.++++++++.. ...++++++|++|+||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999972 23588999999999999999999873
No 223
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.83 E-value=0.0013 Score=63.38 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=39.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCC-CCCHHHHHHHHHHHcCCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ-TPNVKGIVQKVYQHKGYA 217 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 217 (784)
+++|.++|+.|+||||.+..++. +.+.+ ..++..++... .....+-++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhc-cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 47999999999999988877776 33333 55576777643 234556677777777754
No 224
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.83 E-value=0.053 Score=54.85 Aligned_cols=164 Identities=19% Similarity=0.213 Sum_probs=92.9
Q ss_pred CCCCCCCchhHHHHHHHH----hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH-HHHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV-KGIVQKVY 211 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~-~~~~~~i~ 211 (784)
-.++|-.++-..+-+++. .++..-|.|+|+.|.|||+|......+ ...|....+-|........ +-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 357899999999988887 345677889999999999999887764 3445544445555443322 22334444
Q ss_pred HHc----CCCCCCCCChHHHHHHHHHHh---cccCCCcEEEEEeCCCCCc----hHHHhhhh-----ccCCCceEEEecc
Q 003950 212 QHK----GYAVPEFQTDEDAINDLERLL---KPIRPEAILLVLDDVWSGS----ESLLQKFK-----FQLPYYKILVTSR 275 (784)
Q Consensus 212 ~~l----~~~~~~~~~~~~~~~~l~~~~---~~l~~kr~LlVlDdv~~~~----~~~~~~~~-----~~~~gs~iivTtR 275 (784)
+++ ....-...+..+....+-..+ ..-.+-++++|+|.++--. +-++-.+- ...|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 443 222111112222223333333 2223556888888774332 11222221 2345677889999
Q ss_pred ccc-------c--cCCC--ceeccCCCHHHHHHHHHHHh
Q 003950 276 SVF-------P--QFGS--GYDLKPLNDEAARTLFRYSA 303 (784)
Q Consensus 276 ~~~-------~--~~~~--~~~l~~L~~~~a~~lf~~~a 303 (784)
-.. + ...+ ++-++.++-++...+++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 651 1 1111 45566677777777776554
No 225
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.80 E-value=0.008 Score=67.59 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=38.1
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..++.+...+......-|.|+|.+|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998887766566788999999999999999976
No 226
>PRK06526 transposase; Provisional
Probab=96.80 E-value=0.003 Score=63.55 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=52.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 236 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 236 (784)
+..-+.|+|++|+|||+||.++.... ....+. +.++ +..+++..+...... ......+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a-~~~g~~--v~f~------t~~~l~~~l~~~~~~--------~~~~~~l~~--- 156 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA-CQAGHR--VLFA------TAAQWVARLAAAHHA--------GRLQAELVK--- 156 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH-HHCCCc--hhhh------hHHHHHHHHHHHHhc--------CcHHHHHHH---
Confidence 34679999999999999999998732 222232 3343 334455555433110 011112222
Q ss_pred ccCCCcEEEEEeCCCCCc--hH----HHhhhhccCCCceEEEecccc
Q 003950 237 PIRPEAILLVLDDVWSGS--ES----LLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~~--~~----~~~~~~~~~~gs~iivTtR~~ 277 (784)
+ .+.-+||+||+.... .+ +..-+...-....+|+||...
T Consensus 157 -l-~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 157 -L-GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred -h-ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 2 234689999996432 21 222222211223488998765
No 227
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.80 E-value=0.0015 Score=62.68 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=60.0
Q ss_pred CCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeC----CC--CCHHH-------HHH
Q 003950 142 LDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS----QT--PNVKG-------IVQ 208 (784)
Q Consensus 142 r~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~----~~--~~~~~-------~~~ 208 (784)
+..+-...++.|. ...+|.+.|++|.|||.||.+..-+.-..++|+. ++++.-. +. +-+-+ .+.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~k-iii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDK-IIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SE-EEEEE-S--TT----SS---------TTTH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcE-EEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 3444455566666 4569999999999999999888765444567765 5555321 11 00111 122
Q ss_pred HHHHHcCCCCCCCCChHHHHHHHHHH-h-----cccCCC---cEEEEEeCCCCCchH-HHhhhhccCCCceEEEeccc
Q 003950 209 KVYQHKGYAVPEFQTDEDAINDLERL-L-----KPIRPE---AILLVLDDVWSGSES-LLQKFKFQLPYYKILVTSRS 276 (784)
Q Consensus 209 ~i~~~l~~~~~~~~~~~~~~~~l~~~-~-----~~l~~k---r~LlVlDdv~~~~~~-~~~~~~~~~~gs~iivTtR~ 276 (784)
-+...+..-.. .......+.+- + ..++|+ ..+||+|++.+.... +...+--.+.|||+|++--.
T Consensus 82 p~~d~l~~~~~----~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 82 PIYDALEELFG----KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--
T ss_pred HHHHHHHHHhC----hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCc
Confidence 22222222110 11111111110 0 233454 469999999877644 33444556789999998643
No 228
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0069 Score=66.70 Aligned_cols=145 Identities=18% Similarity=0.182 Sum_probs=79.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC--CHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP--NVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 235 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 235 (784)
..-|.|.|..|+|||+||+++++ .+...-.+.+..++++... ..+.+ +..+..++
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~--~~~k~~~~hv~~v~Cs~l~~~~~e~i---------------------Qk~l~~vf 487 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFD--YYSKDLIAHVEIVSCSTLDGSSLEKI---------------------QKFLNNVF 487 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHH--HhccccceEEEEEechhccchhHHHH---------------------HHHHHHHH
Confidence 46789999999999999999998 4433333335556654322 12222 23333333
Q ss_pred -cccCCCcEEEEEeCCCCCc--------hH-----HHhhh-----h-ccCCCce--EEEeccccc---------ccCCCc
Q 003950 236 -KPIRPEAILLVLDDVWSGS--------ES-----LLQKF-----K-FQLPYYK--ILVTSRSVF---------PQFGSG 284 (784)
Q Consensus 236 -~~l~~kr~LlVlDdv~~~~--------~~-----~~~~~-----~-~~~~gs~--iivTtR~~~---------~~~~~~ 284 (784)
+.+...+-+|||||++... ++ .+..+ . ....+.+ +|.|..... .-...+
T Consensus 488 se~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~ 567 (952)
T KOG0735|consen 488 SEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIV 567 (952)
T ss_pred HHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEE
Confidence 4557889999999984211 11 11111 1 1223444 344443320 111226
Q ss_pred eeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 285 YDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 285 ~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
..++.+...+-.++++........ .-......-+..+|+|.
T Consensus 568 ~~L~ap~~~~R~~IL~~~~s~~~~---~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 568 IALPAPAVTRRKEILTTIFSKNLS---DITMDDLDFLSVKTEGY 608 (952)
T ss_pred EecCCcchhHHHHHHHHHHHhhhh---hhhhHHHHHHHHhcCCc
Confidence 788888888777777654422221 11123333377788774
No 229
>PTZ00494 tuzin-like protein; Provisional
Probab=96.77 E-value=0.98 Score=47.96 Aligned_cols=164 Identities=11% Similarity=0.065 Sum_probs=101.6
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHH---hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHH
Q 003950 129 ACSAPDPPPVTPGLDVPLQELKLELF---KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKG 205 (784)
Q Consensus 129 ~~~~~~~~~~~vGr~~~~~~l~~~L~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~ 205 (784)
....+..+..+|.|+.+-..+.+.|. ...++++.+.|.-|.||++|.+..... ++-+ .++|++... ++
T Consensus 363 ~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk----E~~p--aV~VDVRg~---ED 433 (664)
T PTZ00494 363 GMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV----EGVA--LVHVDVGGT---ED 433 (664)
T ss_pred ccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH----cCCC--eEEEEecCC---cc
Confidence 34555667788999999887777776 345899999999999999999988763 2333 348888765 45
Q ss_pred HHHHHHHHcCCCCCCCCChHHHHHHHHHHh----cccCCCcEEEEEe--CCCCCchH--HHhhhhccCCCceEEEecccc
Q 003950 206 IVQKVYQHKGYAVPEFQTDEDAINDLERLL----KPIRPEAILLVLD--DVWSGSES--LLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 206 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~----~~l~~kr~LlVlD--dv~~~~~~--~~~~~~~~~~gs~iivTtR~~ 277 (784)
-++.+.++++.+..+... +..+-+.+.. ....++.-+||+- +-.+...- -.-.+.....-|.|++---.+
T Consensus 434 tLrsVVKALgV~nve~CG--DlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplE 511 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCG--DLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMK 511 (664)
T ss_pred hHHHHHHHhCCCChhhhc--cHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHh
Confidence 577888898876544332 2222222222 2235666666663 21111100 122333344456777654433
Q ss_pred c-------ccCCCceeccCCCHHHHHHHHHHHh
Q 003950 278 F-------PQFGSGYDLKPLNDEAARTLFRYSA 303 (784)
Q Consensus 278 ~-------~~~~~~~~l~~L~~~~a~~lf~~~a 303 (784)
. ..--..|.++.++.++|.+.-.+..
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 1 2222378999999999988766543
No 230
>PRK09183 transposase/IS protein; Provisional
Probab=96.75 E-value=0.0054 Score=62.14 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+.|+|++|+|||+||.++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45688999999999999999976
No 231
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.019 Score=60.14 Aligned_cols=82 Identities=17% Similarity=0.088 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCC
Q 003950 240 PEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGN 309 (784)
Q Consensus 240 ~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~ 309 (784)
+++-++|+|++...+.. ++..+.....++.+|++|.+.. ......+.+.+++.+++.+.+.... .
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~- 186 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V- 186 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-
Confidence 45556667888766532 4555544445677787887752 1123378999999999988876531 1
Q ss_pred CCCcCHHHHHHHHHHcCCchhHH
Q 003950 310 SYIPDENLVNKILRACKGCPLAL 332 (784)
Q Consensus 310 ~~~~~~~~~~~i~~~~~g~PLai 332 (784)
. ... ..+..++|.|+.+
T Consensus 187 --~-~~~---~~l~~~~g~p~~~ 203 (325)
T PRK08699 187 --A-EPE---ERLAFHSGAPLFD 203 (325)
T ss_pred --C-cHH---HHHHHhCCChhhh
Confidence 1 111 1235688999643
No 232
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.011 Score=61.86 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=59.0
Q ss_pred CCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCC
Q 003950 239 RPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDG 308 (784)
Q Consensus 239 ~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~ 308 (784)
.+++-++|+|++...... ++..+-...+++.+|++|.+.. ..-...+.+.+++.++..+.+.... .
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C
Confidence 466778899999776633 6777777777887777776641 2223478999999999998887641 1
Q ss_pred CCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 309 NSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 309 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
. . ...++..++|.|..+..+
T Consensus 206 ---~--~--~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 ---A--D--ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---C--h--HHHHHHHcCCCHHHHHHH
Confidence 1 1 233578899999765543
No 233
>PRK04296 thymidine kinase; Provisional
Probab=96.72 E-value=0.004 Score=59.96 Aligned_cols=110 Identities=10% Similarity=0.030 Sum_probs=60.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC--CCChHHHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPE--FQTDEDAINDLERLLK 236 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~~~ 236 (784)
.++.|+|..|.||||+|..++. +...+-. +++.+. ..++.......++.+++...+. .....+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~-~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGM-KVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCC-eEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh---
Confidence 5788999999999999988887 4433322 243442 1112222233455555533222 1112222222222
Q ss_pred ccCCCcEEEEEeCCCCCchH-HHhhhhc-cCCCceEEEecccc
Q 003950 237 PIRPEAILLVLDDVWSGSES-LLQKFKF-QLPYYKILVTSRSV 277 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~~~~-~~~~~~~-~~~gs~iivTtR~~ 277 (784)
..++.-+||+|.+...... +.+-+.. ...|..||+|.++.
T Consensus 75 -~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~ 116 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDT 116 (190)
T ss_pred -hCCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 2345568999999655333 3333333 45688999998874
No 234
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.012 Score=62.48 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCCCCCchhHHHHHHHHh-CCc-EEEEEEcCCCCcHHHHHHHHhccccccccc---------------------CCceEE
Q 003950 138 VTPGLDVPLQELKLELFK-DGR-QVIVVSAPGGYGKTTLVKKLCKDDQVLGKF---------------------KDNIFF 194 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~-~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---------------------~~~~~w 194 (784)
.++|-+....++..+... +.. ..+.++|++|+||||+|..+.+ .+.... +. +..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~d-~le 78 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAK--ELLCENPTGLLPCGHCRSCKLIPAGNHPD-FLE 78 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHH--HHhCCCcccCCcccchhhhhHHhhcCCCc-eEE
Confidence 357778888888888883 334 4599999999999999999987 332111 22 334
Q ss_pred EEeCCCCC---HHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCC
Q 003950 195 VTVSQTPN---VKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPY 267 (784)
Q Consensus 195 v~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~g 267 (784)
+..+.... ..+.++.+.+...... ..++.-++++|++...... ++..+......
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~-------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESP-------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccCC-------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 44443333 2333333333322111 1367889999999766543 44444455667
Q ss_pred ceEEEecccc
Q 003950 268 YKILVTSRSV 277 (784)
Q Consensus 268 s~iivTtR~~ 277 (784)
+.+|++|...
T Consensus 140 ~~~il~~n~~ 149 (325)
T COG0470 140 TRFILITNDP 149 (325)
T ss_pred eEEEEEcCCh
Confidence 8888888855
No 235
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.18 Score=53.46 Aligned_cols=143 Identities=16% Similarity=0.236 Sum_probs=77.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhccc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI 238 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l 238 (784)
|--.++|++|.|||+++.++++.. .|+ |+=...+...+-.+ ++.++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~yd--IydLeLt~v~~n~d-Lr~LL~~------------------------- 283 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYD--IYDLELTEVKLDSD-LRHLLLA------------------------- 283 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCc--eEEeeeccccCcHH-HHHHHHh-------------------------
Confidence 567899999999999999999832 243 44444443332222 3333322
Q ss_pred CCCcEEEEEeCCCCCch----------------------HHHhhhh---ccCCCceEEE-ecccc------cc---cCCC
Q 003950 239 RPEAILLVLDDVWSGSE----------------------SLLQKFK---FQLPYYKILV-TSRSV------FP---QFGS 283 (784)
Q Consensus 239 ~~kr~LlVlDdv~~~~~----------------------~~~~~~~---~~~~gs~iiv-TtR~~------~~---~~~~ 283 (784)
...+-+||+.|++..-+ .++..+. ..+.+-|||| ||... .. .++.
T Consensus 284 t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 284 TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 34455666666642210 0111111 1112346554 55543 11 2233
Q ss_pred ceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhh
Q 003950 284 GYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSL 339 (784)
Q Consensus 284 ~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L 339 (784)
.+.|.--+.+.-..||.+...... ...+..+|.+...|.-+.-..++..|
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 678888888888888888774432 13455555555555544444444443
No 236
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.019 Score=55.02 Aligned_cols=143 Identities=21% Similarity=0.321 Sum_probs=80.9
Q ss_pred CCCCCC-CCchhHHHHHHHH-------------hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC
Q 003950 136 PPVTPG-LDVPLQELKLELF-------------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP 201 (784)
Q Consensus 136 ~~~~vG-r~~~~~~l~~~L~-------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~ 201 (784)
...+|| .+..+++|.+.+. -..++-|.++|++|.|||-||++|+++ .+ |.++.||.+
T Consensus 145 tYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~-c~firvsgs- 215 (404)
T KOG0728|consen 145 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TD-CTFIRVSGS- 215 (404)
T ss_pred HHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cc-eEEEEechH-
Confidence 344554 5677777777664 124678999999999999999999973 33 557778654
Q ss_pred CHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc----------hH--------HHhhhh
Q 003950 202 NVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS----------ES--------LLQKFK 262 (784)
Q Consensus 202 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~----------~~--------~~~~~~ 262 (784)
++.+..+ + +....+++++ -.-...+..|..|.+++.. ++ ++..+.
T Consensus 216 ---elvqk~i---g----------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqld 279 (404)
T KOG0728|consen 216 ---ELVQKYI---G----------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLD 279 (404)
T ss_pred ---HHHHHHh---h----------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcc
Confidence 2222221 1 1122333333 1114567788888874321 11 222332
Q ss_pred c--cCCCceEEEecccc---------cccCCCceeccCCCHHHHHHHHHHHh
Q 003950 263 F--QLPYYKILVTSRSV---------FPQFGSGYDLKPLNDEAARTLFRYSA 303 (784)
Q Consensus 263 ~--~~~gs~iivTtR~~---------~~~~~~~~~l~~L~~~~a~~lf~~~a 303 (784)
. ....-+||+.|..- ....+..++.++-+++.-.++++-+.
T Consensus 280 gfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 280 GFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 2 23356788777543 11223356777777666666665443
No 237
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.65 E-value=0.00013 Score=63.08 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=40.6
Q ss_pred CCCCCCEEEeecCCCCCCCcccc-cCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEE
Q 003950 667 KLVNLQMLTLASCTDLSALPDTI-GNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVV 745 (784)
Q Consensus 667 ~l~~L~~L~L~~~~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L 745 (784)
....|...+|++|.+ ..+|+.+ ..++.++.|++++| .+..+|.++..++.|+.|+++.|++...|..+..|.+|-.|
T Consensus 51 ~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchh-hhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 334444445555333 3333333 23335555555554 34445555555555555555555555555555455555555
Q ss_pred eCCCC
Q 003950 746 KCDEE 750 (784)
Q Consensus 746 ~l~~~ 750 (784)
+..++
T Consensus 129 ds~~n 133 (177)
T KOG4579|consen 129 DSPEN 133 (177)
T ss_pred cCCCC
Confidence 54444
No 238
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.64 E-value=0.0014 Score=58.03 Aligned_cols=21 Identities=52% Similarity=0.873 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|+|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 239
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.62 E-value=0.0097 Score=59.73 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccc---CCceEEEEeCCCCCHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF---KDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~~wv~~~~~~~~~~~~ 207 (784)
..++.|+|.+|+|||++|.+++........+ ..+++|++..+.++...+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 5799999999999999999987432222211 3458899988777655443
No 240
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.022 Score=60.75 Aligned_cols=139 Identities=18% Similarity=0.246 Sum_probs=77.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-c
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-K 236 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~ 236 (784)
...+.+.|++|+|||+||..++. ...||. +-.++. +++ ++. +.......+...+ .
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPF-vKiiSp------e~m-------iG~------sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIAL----SSDFPF-VKIISP------EDM-------IGL------SESAKCAHIKKIFED 593 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHh----hcCCCe-EEEeCh------HHc-------cCc------cHHHHHHHHHHHHHH
Confidence 56788999999999999999986 457886 422221 110 011 1112223344444 4
Q ss_pred ccCCCcEEEEEeCCCCCchH----------HHhhh----hccCC-Cce--EEEecccc--------cccCCCceeccCCC
Q 003950 237 PIRPEAILLVLDDVWSGSES----------LLQKF----KFQLP-YYK--ILVTSRSV--------FPQFGSGYDLKPLN 291 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~~~~----------~~~~~----~~~~~-gs~--iivTtR~~--------~~~~~~~~~l~~L~ 291 (784)
.-+..--.||+||+...-+| +++.+ ...-| |-| |+-||... .......|.++.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 44677789999998443332 22222 22222 334 33344333 12234478999888
Q ss_pred H-HHHHHHHHHHh-ccCCCCCCCcCHHHHHHHHHHc
Q 003950 292 D-EAARTLFRYSA-NLQDGNSYIPDENLVNKILRAC 325 (784)
Q Consensus 292 ~-~~a~~lf~~~a-~~~~~~~~~~~~~~~~~i~~~~ 325 (784)
. ++..+.++..- |.+ ...+.++++.+.+|
T Consensus 674 ~~~~~~~vl~~~n~fsd-----~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFSD-----DEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccCCCc-----chhHHHHHHHhccc
Confidence 7 67777776543 322 22456677777776
No 241
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.60 E-value=0.0062 Score=59.86 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=34.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQ 208 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 208 (784)
.+++.|+|.+|+|||++|.++.. ..... ..+++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~--~~~~~-g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAV--NAARQ-GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhC-CCeEEEEECCC-CCHHHHHH
Confidence 58999999999999999998876 33233 33478999865 55555444
No 242
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.57 E-value=0.025 Score=54.83 Aligned_cols=163 Identities=16% Similarity=0.216 Sum_probs=90.1
Q ss_pred CCCCCCCchhH---HHHHHHHhC------CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHH
Q 003950 137 PVTPGLDVPLQ---ELKLELFKD------GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 137 ~~~vGr~~~~~---~l~~~L~~~------~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 207 (784)
+++||.++.+. -|++.|.+. .++-|..+|++|.|||.+|+++++. .+-.| +.+.. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~----l~vka------t~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL----LLVKA------TEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce----EEech------HHH-
Confidence 45688887654 355566533 2789999999999999999999983 32222 12211 111
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc-----h-----------HHHhhhhc--cCCCc
Q 003950 208 QKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS-----E-----------SLLQKFKF--QLPYY 268 (784)
Q Consensus 208 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~-----~-----------~~~~~~~~--~~~gs 268 (784)
|-+.. .++..++.++. ..-+.-+|++.+|.++... + .++..+.. .+.|.
T Consensus 188 --iGehV----------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 188 --IGEHV----------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred --HHHHh----------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 11111 23334445544 2225678999999874321 1 12222221 12355
Q ss_pred eEEEeccccc-----c--cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 269 KILVTSRSVF-----P--QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 269 ~iivTtR~~~-----~--~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
..|-.|.... . .....++...-+++|-.+++...+-.-. .+...-.+.++++.+|+
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P----lpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP----LPVDADLRYLAAKTKGM 318 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC----CccccCHHHHHHHhCCC
Confidence 5555555441 1 1222566666778888888887773322 22223356666666664
No 243
>PHA02244 ATPase-like protein
Probab=96.57 E-value=0.026 Score=58.85 Aligned_cols=46 Identities=7% Similarity=0.146 Sum_probs=30.2
Q ss_pred CCCCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 135 PPPVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....++|...........+. -....-|.|+|++|+|||+||++++.
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHH
Confidence 34456776665543333322 11223477899999999999999987
No 244
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.014 Score=62.13 Aligned_cols=45 Identities=24% Similarity=0.337 Sum_probs=34.8
Q ss_pred CCCCCCCc---hhHHHHHHHHhCC---------cEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 137 PVTPGLDV---PLQELKLELFKDG---------RQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 137 ~~~vGr~~---~~~~l~~~L~~~~---------~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
.++-|-|+ |+++|+++|.+.. ++-|.++|++|.|||-||++++-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 34567775 5667777777431 578999999999999999999974
No 245
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.56 E-value=0.011 Score=69.70 Aligned_cols=164 Identities=15% Similarity=0.197 Sum_probs=89.1
Q ss_pred CCCCCCCchhHHHHHHHHh-------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
..+.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+++++ ..... .+.+..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~----fi~v~~~----- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGAN----FIAVRGP----- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCC----EEEEehH-----
Confidence 4467888877777776541 1245689999999999999999998 32222 2222221
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc------------hH----HHhhhhc--c
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS------------ES----LLQKFKF--Q 264 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~------------~~----~~~~~~~--~ 264 (784)
+ ++.... .+....++.++ ..-...+.+|++|++.... +. ++..+.. .
T Consensus 522 -~----l~~~~v---------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~ 587 (733)
T TIGR01243 522 -E----ILSKWV---------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE 587 (733)
T ss_pred -H----Hhhccc---------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC
Confidence 1 111110 01112334444 2224667999999984310 11 2222221 1
Q ss_pred CCCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch
Q 003950 265 LPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP 329 (784)
Q Consensus 265 ~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 329 (784)
..+.-||.||.... . .....+.++..+.++-.++|..+..+..... ......+++.+.|.-
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~----~~~l~~la~~t~g~s 657 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE----DVDLEELAEMTEGYT 657 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc----cCCHHHHHHHcCCCC
Confidence 22344566665431 1 2344788888898988889876553322111 112455667777643
No 246
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.011 Score=64.69 Aligned_cols=182 Identities=17% Similarity=0.155 Sum_probs=106.9
Q ss_pred CCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHH--
Q 003950 137 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH-- 213 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~-- 213 (784)
.++||-+.-+..|...+..+. ..-....|+-|+||||+|+-++.-.. +.. + ...+.+..-...+.|...
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN----C~~---~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN----CEN---G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc----CCC---C-CCCCcchhhhhhHhhhcCCc
Confidence 456999999999999888665 45677899999999999998876211 111 0 001111111111222211
Q ss_pred ---cCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------
Q 003950 214 ---KGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 278 (784)
Q Consensus 214 ---l~~~~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 278 (784)
+..+.... ..-+..+.+.+-. .-.++|-=+.|+|+|+-.... ++..+-..-+..+.|+.|.+..
T Consensus 88 ~DviEiDaASn-~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASN-TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhc-cChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 00000000 1112222222222 223577778999999766533 4455555555777777777762
Q ss_pred ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchh
Q 003950 279 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL 330 (784)
Q Consensus 279 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL 330 (784)
......|.++.++.++-...+...+-..+. .-.++...-|++..+|..-
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGI---NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcCCChh
Confidence 222337999999999888888887755443 2246777788888888553
No 247
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.53 E-value=0.012 Score=60.93 Aligned_cols=115 Identities=13% Similarity=0.062 Sum_probs=64.8
Q ss_pred CCCchhHHHHHHHHh----CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCC
Q 003950 141 GLDVPLQELKLELFK----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY 216 (784)
Q Consensus 141 Gr~~~~~~l~~~L~~----~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 216 (784)
++........+++.. ...+-+.++|..|+|||.||.++++... ...+. +.++++ .+++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~--v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS--STLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC--EEEEEH------HHHHHHHHHHHhc
Confidence 343444444455541 1356799999999999999999998422 22333 456665 3455566555421
Q ss_pred CCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc--hHH----Hhhhhc-c-CCCceEEEecccc
Q 003950 217 AVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS--ESL----LQKFKF-Q-LPYYKILVTSRSV 277 (784)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--~~~----~~~~~~-~-~~gs~iivTtR~~ 277 (784)
. ...+.+.. + .+-=||||||+.... +|. +..+.. . ..+-.+|+||.-.
T Consensus 206 ~--------~~~~~l~~----l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 206 G--------SVKEKIDA----V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred C--------cHHHHHHH----h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 1 11122222 1 345689999996442 332 232211 1 2456788998743
No 248
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.52 E-value=0.01 Score=69.96 Aligned_cols=163 Identities=12% Similarity=0.142 Sum_probs=87.9
Q ss_pred CCCCCCchhHHHHHHHHh-------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 138 VTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
.+.|.+..++++.+++.. ...+.|.++|++|+|||+||+++++ ..... .+.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~----~i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAY----FISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCe----EEEEecH------
Confidence 478999999988887641 2246789999999999999999987 33222 2223221
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc-----------hH----HHhhhhcc-CCC
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS-----------ES----LLQKFKFQ-LPY 267 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~-----------~~----~~~~~~~~-~~g 267 (784)
++. .... ......++.++ ......+.+|++|++.... .. ++..+... ..+
T Consensus 247 ~i~----~~~~---------g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 247 EIM----SKYY---------GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred HHh----cccc---------cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 111 0000 01112233333 2224567899999984321 01 22222211 123
Q ss_pred ceEEE-eccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch
Q 003950 268 YKILV-TSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP 329 (784)
Q Consensus 268 s~iiv-TtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 329 (784)
..++| ||.... . .....+.++..+.++-.+++....-.... ........+++.+.|.-
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l----~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL----AEDVDLDKLAEVTHGFV 381 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC----ccccCHHHHHHhCCCCC
Confidence 34444 444321 1 12235777777888888888754422111 11223567888888864
No 249
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.017 Score=62.68 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=61.3
Q ss_pred CCCCCCCchhHHHHHHHHh------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 137 PVTPGLDVPLQELKLELFK------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
..+-|.+..+.++.+++.. ...+-|.++|++|.|||.||+++++.. . +-++.++-.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~------vPf~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--G------VPFLSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--C------CceEeecch----
Confidence 4567999999988888761 125779999999999999999999832 2 223333222
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCC
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWS 252 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~ 252 (784)
.|+..+.+ +..+.+++++ +....-++++++|+++.
T Consensus 258 ----eivSGvSG---------ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ----EIVSGVSG---------ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ----hhhcccCc---------ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 22222222 2234566666 55578899999999854
No 250
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.47 E-value=0.009 Score=59.46 Aligned_cols=45 Identities=13% Similarity=0.306 Sum_probs=33.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGI 206 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~ 206 (784)
..++.|+|.+|+|||++|.+++.. .... ...++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~--~~~~-~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVE--AAKN-GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHC-CCeEEEEECC-CCCHHHH
Confidence 579999999999999999998863 3222 3347799886 5555443
No 251
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.021 Score=62.80 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=32.9
Q ss_pred CCCCCCchhHHHHHHHH-------------hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 138 VTPGLDVPLQELKLELF-------------KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~-------------~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
++-|.++-+.+|.+.+. -...+-|..+|++|.|||++|+++++
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn 490 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN 490 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh
Confidence 43457766666665554 13468899999999999999999998
No 252
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.0022 Score=62.44 Aligned_cols=99 Identities=20% Similarity=0.198 Sum_probs=68.2
Q ss_pred CCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCC--CCCCccchhhhCCCCCCEEeccCCCCCC---cChhhhCCCC
Q 003950 667 KLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISEC--LNIQELPERIGELCSLKTLCLKGCSMFE---LPSSILNLEN 741 (784)
Q Consensus 667 ~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n--~~~~~~p~~l~~l~~L~~L~l~~n~l~~---lp~~l~~l~~ 741 (784)
.+.+|+.|.+.++..++. ..+..|++|+.|.++.| .....++....++++|++|++++|.+.. ++ .+..+++
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 445566666665444322 34556889999999999 5555666566677999999999999773 33 3577888
Q ss_pred CCEEeCCCCchhcH----HHHhhcCCCcEEe
Q 003950 742 LEVVKCDEETAYQW----EYFQLGQAKFRIE 768 (784)
Q Consensus 742 L~~L~l~~~~~~~~----~~~~~~lp~L~i~ 768 (784)
|..|++.++..... +++...+|.|++.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~L 148 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYL 148 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccc
Confidence 88888777655442 4455557777654
No 253
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.46 E-value=0.013 Score=58.37 Aligned_cols=99 Identities=17% Similarity=0.282 Sum_probs=53.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 237 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 237 (784)
...+.++|.+|+|||+||.++++. +... ...+++++ ..+++..+-...... ...... +++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~-g~~v~~it------~~~l~~~l~~~~~~~------~~~~~~----~l~~ 159 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLR-GKSVLIIT------VADIMSAMKDTFSNS------ETSEEQ----LLND 159 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhc-CCeEEEEE------HHHHHHHHHHHHhhc------cccHHH----HHHH
Confidence 457899999999999999999983 3322 12355554 345555544433210 011111 1222
Q ss_pred cCCCcEEEEEeCCCCCc--hH---HHhhhhcc--CCCceEEEeccc
Q 003950 238 IRPEAILLVLDDVWSGS--ES---LLQKFKFQ--LPYYKILVTSRS 276 (784)
Q Consensus 238 l~~kr~LlVlDdv~~~~--~~---~~~~~~~~--~~gs~iivTtR~ 276 (784)
+. +.=+||+||+.... +| ++-.+... ...-.+||||..
T Consensus 160 l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 160 LS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred hc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 23 34488899996543 22 22222221 124568888864
No 254
>PRK06696 uridine kinase; Validated
Probab=96.44 E-value=0.0035 Score=62.19 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=33.5
Q ss_pred CCCchhHHHHHHHH---hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 141 GLDVPLQELKLELF---KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 141 Gr~~~~~~l~~~L~---~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|.+.+++|.+.+. .++..+|+|.|.+|+||||+|+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35667778888876 35678999999999999999999987
No 255
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.0026 Score=56.96 Aligned_cols=35 Identities=34% Similarity=0.478 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccc-cCCceEEE
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGK-FKDNIFFV 195 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~~wv 195 (784)
--|+|.|++|+||||+++.+.+ .++.. |..+-||.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t 41 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFIT 41 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEEe
Confidence 4589999999999999999998 55444 66555554
No 256
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.42 E-value=0.0013 Score=63.75 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=124.2
Q ss_pred CCCceEEEEEecCCCCcccC----hhccCCCCCcEEEeecccccCCcCcCc----------cccCCCCCCCEEEecccCC
Q 003950 519 EAPEVKVVVLNVRTKKYTLP----KFLEKMDKLKVMIVTNYGFFPAELSNI----------QVFGALSNLKRIRLEHVSL 584 (784)
Q Consensus 519 ~~~~l~~l~L~~~~~~~~~p----~~l~~l~~L~~L~l~~~~~~~~~~~~l----------~~l~~l~~L~~L~L~~n~l 584 (784)
.||.++.+.|+-+......| ..+++-..|.+|.+++||.-|..-+.+ +...+-+.|+......|.+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 58888888888775544444 467889999999999998876543222 2345668899999999988
Q ss_pred CCcc-------ccccccCceeeeeeccccccccC--ccccccccCCceEEEEEeCCCCCCC----CCcccCCCCCCcEEE
Q 003950 585 PSLT-------TVRMKHLQNVSLVMCNVDQVVQN--STFHFSDAFPNLLEIDIDYCNDLIE----LPDGLCDIVSIKKLR 651 (784)
Q Consensus 585 ~~~~-------~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~ 651 (784)
.+.+ ...-.+|+.+.+..|.+..-.-. ....+ ..+.+|++|+|..|.++.. +...++..+.|+.|.
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl-~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGL-FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHH-HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 6651 22235888999988877543111 11111 2578999999999987643 344566677899999
Q ss_pred ccCCCCCCCCchh----c--cCCCCCCEEEeecCCCCCCCccc-------ccCCCCCCEEeccCCCC
Q 003950 652 ITNCHKLSALPEG----I--GKLVNLQMLTLASCTDLSALPDT-------IGNLSNLNFLDISECLN 705 (784)
Q Consensus 652 L~~~~~~~~lp~~----l--~~l~~L~~L~L~~~~~~~~~p~~-------~~~l~~L~~L~l~~n~~ 705 (784)
+..|-....-..+ + ...++|+.|...+|..-+..-.. -..++-|..|.+.+|.+
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 9998654432222 2 24688999999887654432211 13566677777777754
No 257
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.078 Score=54.65 Aligned_cols=42 Identities=29% Similarity=0.374 Sum_probs=30.4
Q ss_pred CCCCCchhHHHHHHHH---------h---CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 139 TPGLDVPLQELKLELF---------K---DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 139 ~vGr~~~~~~l~~~L~---------~---~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.|.++.++-|.+... . ...+-|..+|++|.|||-||++|+.
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 4555555555555543 1 1257899999999999999999997
No 258
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.38 E-value=0.012 Score=53.40 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=33.1
Q ss_pred CCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 140 PGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 140 vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
||....++++.+.+. ......|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 577888888888887 455677899999999999999998873
No 259
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.35 E-value=0.016 Score=60.87 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=40.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccc---cCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK---FKDNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
..++-|+|.+|+|||+++.+++........ -...++|++..+.++.+.+. ++++.++
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 588999999999999999988763222111 12358899998888877654 3444444
No 260
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.34 E-value=0.014 Score=63.20 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC-CCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 235 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 235 (784)
.+.+|.++|.+|+||||+|..++. ..... ..++..+++... ....+.++.+.++++.+........+....+.+.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~-g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKK-GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHc-CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 468999999999999999999886 33322 223445554321 12344566666666554322211122223333333
Q ss_pred cccCCCcEEEEEeCC
Q 003950 236 KPIRPEAILLVLDDV 250 (784)
Q Consensus 236 ~~l~~kr~LlVlDdv 250 (784)
+++.+. -+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 45777766
No 261
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.32 E-value=0.01 Score=60.44 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=70.7
Q ss_pred CCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcc-cccccccCCceEE---EEeCCCC---------CHHHHH
Q 003950 141 GLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKD-DQVLGKFKDNIFF---VTVSQTP---------NVKGIV 207 (784)
Q Consensus 141 Gr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~-~~~~~~f~~~~~w---v~~~~~~---------~~~~~~ 207 (784)
+|..+-.--.++|.+++...|.+.|.+|.|||.||.+..=. ...++.|..-++. +.+++.. ...--+
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWm 307 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWM 307 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchH
Confidence 34444444457777899999999999999999988664321 1223344431111 1122221 111122
Q ss_pred HHHHHHcCCCC-CCCCChHHHHHHHHHHh----------cccCCC---cEEEEEeCCCCCchH-HHhhhhccCCCceEEE
Q 003950 208 QKVYQHKGYAV-PEFQTDEDAINDLERLL----------KPIRPE---AILLVLDDVWSGSES-LLQKFKFQLPYYKILV 272 (784)
Q Consensus 208 ~~i~~~l~~~~-~~~~~~~~~~~~l~~~~----------~~l~~k---r~LlVlDdv~~~~~~-~~~~~~~~~~gs~iiv 272 (784)
+.|...+..-. ..... ...+...+ .+++++ .-+||+|.+.+.... +..-+.-.++||||+.
T Consensus 308 q~i~DnLE~L~~~~~~~----~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~GsKIVl 383 (436)
T COG1875 308 QAIFDNLEVLFSPNEPG----DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGSKIVL 383 (436)
T ss_pred HHHHhHHHHHhcccccc----hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCCEEEE
Confidence 33332221100 00001 12222221 233454 468999999887754 4555667889999999
Q ss_pred ecc
Q 003950 273 TSR 275 (784)
Q Consensus 273 TtR 275 (784)
|--
T Consensus 384 ~gd 386 (436)
T COG1875 384 TGD 386 (436)
T ss_pred cCC
Confidence 864
No 262
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.32 E-value=0.0037 Score=68.41 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=38.6
Q ss_pred CCCCCCchhHHHHHHHH------hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 138 VTPGLDVPLQELKLELF------KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+++|.++.+++|++.|. ....+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 47999999999999994 44568999999999999999999986
No 263
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.32 E-value=0.011 Score=58.48 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=30.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN 202 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~ 202 (784)
..++.|.|.+|+||||+|.+++. ..... ...++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~--~~~~~-g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAV--ETAGQ-GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhc-CCeEEEEECCCCCH
Confidence 58999999999999999999886 33222 33477887655443
No 264
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.30 E-value=0.013 Score=60.61 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=52.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCC-----CCCCChHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAV-----PEFQTDEDAINDLE 232 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 232 (784)
.+++-|+|++|+||||||.++... .... ...++|++..+.++.. .+++++... ......++....+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~--~~~~-g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAE--AQKA-GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 479999999999999999987763 3222 4457799887665553 234443321 11123344444444
Q ss_pred HHhcccCCCcEEEEEeCCC
Q 003950 233 RLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 233 ~~~~~l~~kr~LlVlDdv~ 251 (784)
.+++ .+..-+||+|.|-
T Consensus 127 ~li~--~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVR--SGAVDIIVVDSVA 143 (321)
T ss_pred HHhh--ccCCcEEEEcchh
Confidence 4332 3567799999974
No 265
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.29 E-value=0.017 Score=60.03 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=41.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc---cccCCceEEEEeCCCCCHHHHHHHHHHHcCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVL---GKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY 216 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 216 (784)
.+++-|+|.+|+|||+|+.+++-..... +.-...++|++....++++.+.+ ++++++.
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4789999999999999998876422222 12244688999988888887654 5566654
No 266
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.28 E-value=0.016 Score=57.68 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=35.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccc-----CCceEEEEeCCCCCHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-----KDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-----~~~~~wv~~~~~~~~~~~~ 207 (784)
..++.|+|.+|+|||+||..++.. ....- +.+++|++....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 579999999999999999988752 22222 2457899987776665543
No 267
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.25 E-value=0.028 Score=58.75 Aligned_cols=101 Identities=18% Similarity=0.303 Sum_probs=54.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 236 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 236 (784)
....+.++|.+|+|||+||.++++ .+... ...++++++ .+++..+...-.. ...+....+..+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~--~l~~~-g~~V~y~t~------~~l~~~l~~~~~~------~~~~~~~~~~~l~- 245 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAK--ELLDR-GKSVIYRTA------DELIEILREIRFN------NDKELEEVYDLLI- 245 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHHHC-CCeEEEEEH------HHHHHHHHHHHhc------cchhHHHHHHHhc-
Confidence 347799999999999999999998 33322 123556654 3344444332110 0111111122222
Q ss_pred ccCCCcEEEEEeCCCCCc--hH----HHhhhhcc-CCCceEEEecccc
Q 003950 237 PIRPEAILLVLDDVWSGS--ES----LLQKFKFQ-LPYYKILVTSRSV 277 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~~--~~----~~~~~~~~-~~gs~iivTtR~~ 277 (784)
.-=|||+||+.... ++ +..-+... ..+-.+||||...
T Consensus 246 ----~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 246 ----NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred ----cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 22489999995442 32 22222221 2356789998753
No 268
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.25 E-value=0.028 Score=51.62 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=60.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC---CCHHHHHHHHH--H--HcCCCC-CCCCChHHHHHH
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT---PNVKGIVQKVY--Q--HKGYAV-PEFQTDEDAIND 230 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~---~~~~~~~~~i~--~--~l~~~~-~~~~~~~~~~~~ 230 (784)
..|-|++..|.||||+|....- +..++ ..++.++..-.. ......++.+- . +.+... -...+.......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGH-GYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHC-CCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHH
Confidence 4688888899999999987765 33322 223556554322 23333333330 0 001100 000111121122
Q ss_pred HHHHh----ccc-CCCcEEEEEeCCCCC-------chHHHhhhhccCCCceEEEecccc
Q 003950 231 LERLL----KPI-RPEAILLVLDDVWSG-------SESLLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 231 l~~~~----~~l-~~kr~LlVlDdv~~~-------~~~~~~~~~~~~~gs~iivTtR~~ 277 (784)
.++.+ +.+ .++-=|+|||++-.. .+.+.+.+....++..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 22222 222 345569999998332 234556555555678999999986
No 269
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.14 E-value=0.035 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|.|..|.|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 270
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.14 E-value=0.011 Score=55.83 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=44.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccC-CceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhccc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFK-DNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI 238 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l 238 (784)
.|.|.|.+|.||||+|+.+.+...+ .|.+ ...+|-.+..........+..+.+-. ...++-....+...+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i-~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~-----lv~d~i~~~~v~~rl~~~ 75 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL-PHLDTGDILRAAIAERTELGEEIKKYIDKGE-----LVPDEIVNGLVKERLDEA 75 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-cEEcHhHHhHhhhccCChHHHHHHHHHHcCC-----ccchHHHHHHHHHHHHhh
Confidence 4789999999999999999873111 1222 11222222222222222223222211 223333445555555433
Q ss_pred CCCcEEEEEeCCCCCc
Q 003950 239 RPEAILLVLDDVWSGS 254 (784)
Q Consensus 239 ~~kr~LlVlDdv~~~~ 254 (784)
..+. .+|+|+.-...
T Consensus 76 d~~~-~~I~dg~PR~~ 90 (178)
T COG0563 76 DCKA-GFILDGFPRTL 90 (178)
T ss_pred cccC-eEEEeCCCCcH
Confidence 3333 88899985543
No 271
>PRK09354 recA recombinase A; Provisional
Probab=96.13 E-value=0.018 Score=59.99 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=53.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCC-----CCCCChHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAV-----PEFQTDEDAINDLE 232 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 232 (784)
-+++-|+|++|+||||||.+++.. .... ...++|++..+.+++. .+++++... ......++....+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~--~~~~-G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAE--AQKA-GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 579999999999999999988763 2222 3457899987777653 334443321 11123444444444
Q ss_pred HHhcccCCCcEEEEEeCCC
Q 003950 233 RLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 233 ~~~~~l~~kr~LlVlDdv~ 251 (784)
.+++ .++.-+||+|.|-
T Consensus 132 ~li~--s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVR--SGAVDLIVVDSVA 148 (349)
T ss_pred HHhh--cCCCCEEEEeChh
Confidence 4443 4567799999984
No 272
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.12 E-value=0.0089 Score=61.81 Aligned_cols=84 Identities=20% Similarity=0.271 Sum_probs=52.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCC-----CCCCChHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAV-----PEFQTDEDAINDLE 232 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 232 (784)
-+++-|+|++|+||||||.+++.. .... ...++|++..+.+++. .+++++... ....+.++....+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~--~~~~-g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAE--AQKL-GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 578999999999999999987752 2222 3457799887766653 233333211 11123344444444
Q ss_pred HHhcccCCCcEEEEEeCCC
Q 003950 233 RLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 233 ~~~~~l~~kr~LlVlDdv~ 251 (784)
.+++ .+..-+||+|.|-
T Consensus 127 ~li~--s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVR--SGAVDLIVVDSVA 143 (325)
T ss_pred HHHh--ccCCCEEEEcchH
Confidence 4442 4567799999873
No 273
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.08 E-value=0.024 Score=66.08 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=60.3
Q ss_pred CCCCCCCchhHHHHHHHHh--------C-CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHH
Q 003950 137 PVTPGLDVPLQELKLELFK--------D-GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~--------~-~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 207 (784)
..++|-+..++.|.+.+.. . ....+.++|++|+|||++|+.++. ... ...+.+++++-.....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~----~~~i~id~se~~~~~~-- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALG----IELLRFDMSEYMERHT-- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhC----CCcEEeechhhccccc--
Confidence 4578999999999888871 1 135789999999999999999987 332 2234555544322111
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH
Q 003950 208 QKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES 256 (784)
Q Consensus 208 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~ 256 (784)
+.+-++.+ +.-... +....+...+. +....+|+||++......
T Consensus 530 --~~~LiG~~-~gyvg~-~~~g~L~~~v~--~~p~sVlllDEieka~~~ 572 (758)
T PRK11034 530 --VSRLIGAP-PGYVGF-DQGGLLTDAVI--KHPHAVLLLDEIEKAHPD 572 (758)
T ss_pred --HHHHcCCC-CCcccc-cccchHHHHHH--hCCCcEEEeccHhhhhHH
Confidence 11122221 111110 11112222221 234579999999776544
No 274
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.07 E-value=0.033 Score=56.28 Aligned_cols=91 Identities=22% Similarity=0.194 Sum_probs=55.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCC-CCCCCCChHHHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY-AVPEFQTDEDAINDLERLLK 236 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~l~~~~~ 236 (784)
.+++=|+|+.|.||||+|.+++-..+ ..-. .++|++.-..+++..+..-....+.. -.....+.++....+.....
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~-~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQ--KPGG-KAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhh--cCCC-eEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 57899999999999999998876333 3332 47899998888887754433331211 11112233333333333333
Q ss_pred ccCCCcEEEEEeCCC
Q 003950 237 PIRPEAILLVLDDVW 251 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~ 251 (784)
....+--|+|+|.|-
T Consensus 137 ~~~~~i~LvVVDSva 151 (279)
T COG0468 137 SGAEKIDLLVVDSVA 151 (279)
T ss_pred hccCCCCEEEEecCc
Confidence 223357799999883
No 275
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.1 Score=52.46 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=30.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc--cccCCceEEEEe
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVL--GKFKDNIFFVTV 197 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~~wv~~ 197 (784)
-++|.++|++|.|||+|.+++++...++ +.|..++ .+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~-liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ-LIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce-EEEE
Confidence 4899999999999999999999865443 4565534 5554
No 276
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.06 E-value=0.08 Score=57.03 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 277
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.06 E-value=0.013 Score=55.70 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEe
Q 003950 160 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 197 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~ 197 (784)
++.++|++|+||||++..++. ..... ..++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~-g~~v~~i~~ 36 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKK-GKKVLLVAA 36 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHC-CCcEEEEEc
Confidence 688999999999999999886 33332 223445554
No 278
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.093 Score=52.02 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=36.0
Q ss_pred CCCCCCCchhHHHHHHHH---------hC---CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELF---------KD---GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~---------~~---~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++.|.+...+.|.+... .+ ..+-|.++|++|.||+-||++|+.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT 188 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT 188 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh
Confidence 346788888888888754 11 267899999999999999999997
No 279
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.17 Score=57.77 Aligned_cols=169 Identities=16% Similarity=0.170 Sum_probs=95.7
Q ss_pred CCCCCCCCCchhHHHHHH---HHhC------C---cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCC
Q 003950 135 PPPVTPGLDVPLQELKLE---LFKD------G---RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN 202 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~---L~~~------~---~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~ 202 (784)
.-.++.|-++.+++|.+. |.+. + ++=+.++|++|.|||-||++++-.. ++=+++++.+
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA--------gVPF~svSGS-- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSVSGS-- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc--------CCceeeechH--
Confidence 345678888766655554 4422 1 5779999999999999999999732 2335555432
Q ss_pred HHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc---------------hH----HHhhhh
Q 003950 203 VKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS---------------ES----LLQKFK 262 (784)
Q Consensus 203 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~---------------~~----~~~~~~ 262 (784)
+. .+.+.+. ...+++.++ ..-...++.|.+|+++... +. ++....
T Consensus 379 --EF----vE~~~g~---------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 379 --EF----VEMFVGV---------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred --HH----HHHhccc---------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 11 1111111 012334444 2225778888888874211 11 222222
Q ss_pred ccCCCc-eEEEeccccc----------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhH
Q 003950 263 FQLPYY-KILVTSRSVF----------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLA 331 (784)
Q Consensus 263 ~~~~gs-~iivTtR~~~----------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLa 331 (784)
.+..++ .|++.+.++. -..+..+.++.-+.....++|.-++...... .+..++++ |+...-|.+=|
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 222222 3444433331 1233467788778888889998887554432 23456666 88888888744
No 280
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.05 E-value=0.018 Score=54.79 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=27.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEE
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFV 195 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv 195 (784)
...+|.+.|++|+||||+|+.++. .....+.. +.++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~-~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSN-VIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCc-EEEE
Confidence 356899999999999999999998 55555555 3344
No 281
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.11 Score=56.58 Aligned_cols=123 Identities=11% Similarity=0.168 Sum_probs=72.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-c
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-K 236 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~ 236 (784)
..-|.+||++|.|||-||++|+| +..-.| ++|... +++.+-. .+....++.++ +
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF------isVKGP----ELlNkYV-------------GESErAVR~vFqR 599 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF------ISVKGP----ELLNKYV-------------GESERAVRQVFQR 599 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce------EeecCH----HHHHHHh-------------hhHHHHHHHHHHH
Confidence 56789999999999999999999 444343 444322 2222221 11223444445 3
Q ss_pred ccCCCcEEEEEeCCCCCc-----------hHHHhh----hhcc--CCCceEEEeccccc---------ccCCCceeccCC
Q 003950 237 PIRPEAILLVLDDVWSGS-----------ESLLQK----FKFQ--LPYYKILVTSRSVF---------PQFGSGYDLKPL 290 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~~-----------~~~~~~----~~~~--~~gs~iivTtR~~~---------~~~~~~~~l~~L 290 (784)
.-..-+++|.||.++..- ..+... +... ..|.-||-.|..+. ...+....++.-
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 336789999999984321 112222 2221 23455665554431 123346778888
Q ss_pred CHHHHHHHHHHHhcc
Q 003950 291 NDEAARTLFRYSANL 305 (784)
Q Consensus 291 ~~~~a~~lf~~~a~~ 305 (784)
+.+|-.++++.....
T Consensus 680 n~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 680 NAEERVAILKTITKN 694 (802)
T ss_pred CHHHHHHHHHHHhcc
Confidence 888888998887754
No 282
>PRK10867 signal recognition particle protein; Provisional
Probab=96.02 E-value=0.015 Score=62.90 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877765
No 283
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.01 E-value=0.062 Score=63.02 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=37.9
Q ss_pred CCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 137 PVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
..++|+...+..+.+.+. .....-|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 368999999999887776 344568999999999999999999873
No 284
>PRK06547 hypothetical protein; Provisional
Probab=96.00 E-value=0.0092 Score=56.16 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=27.3
Q ss_pred HHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 148 ELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 148 ~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+...+......+|+|.|.+|+||||+|+.+.+
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344445566788999999999999999999987
No 285
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.99 E-value=0.035 Score=55.36 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....+|+|.|++|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999986
No 286
>PRK07667 uridine kinase; Provisional
Probab=95.98 E-value=0.0093 Score=57.61 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=28.5
Q ss_pred hHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 146 LQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 146 ~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+.+.+.+. .+...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666666 34468999999999999999999987
No 287
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.98 E-value=0.031 Score=58.63 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=42.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc---cccCCceEEEEeCCCCCHHHHHHHHHHHcCCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVL---GKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYA 217 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 217 (784)
.+++-|+|.+|+|||+|+.+++-..... +.....++|++....+.++.+.+ ++++++..
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 5788899999999999999886422322 22345688999999999888655 55665543
No 288
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.025 Score=64.68 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=81.2
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCC-----ceEEEEeCCCCCHHHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKD-----NIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~-----~~~wv~~~~~~~~~~~~~~i 210 (784)
+.++||++|+.++++.|....-.--.++|.+|+|||++|.-++. ++. +.-|. +++-.+++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sLD~g------------ 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSLDLG------------ 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEecHH------------
Confidence 45699999999999999844333456789999999999888776 332 22221 12212111
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCch---------H---HHhhhhccCCCceEEEecccc
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGSE---------S---LLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~~---------~---~~~~~~~~~~gs~iivTtR~~ 277 (784)
.-..+. .-..+-.++++.+++.+ +.++..|++|.++..-. + ++.+-...+.--.|-.||-++
T Consensus 236 -~LvAGa----kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~E 310 (786)
T COG0542 236 -SLVAGA----KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDE 310 (786)
T ss_pred -HHhccc----cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHH
Confidence 111111 11223334455555333 34489999999854220 0 222211112223455666554
Q ss_pred c----------ccCCCceeccCCCHHHHHHHHHHH
Q 003950 278 F----------PQFGSGYDLKPLNDEAARTLFRYS 302 (784)
Q Consensus 278 ~----------~~~~~~~~l~~L~~~~a~~lf~~~ 302 (784)
- ...-..+.+...+.+++..+++..
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 1 111226778888888888887643
No 289
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.97 E-value=0.06 Score=51.39 Aligned_cols=117 Identities=20% Similarity=0.243 Sum_probs=60.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEE--EeCCCCCHHH------HHHHHHHHcCCCC---CCCCChH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFV--TVSQTPNVKG------IVQKVYQHKGYAV---PEFQTDE 225 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv--~~~~~~~~~~------~~~~i~~~l~~~~---~~~~~~~ 225 (784)
.-.+++|+|..|.|||||++.++.. .....+.+.|- ++.. .+... ...++++.++... .......
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 3468999999999999999999862 22344434332 1221 12211 1122445544321 0011111
Q ss_pred HHHHHHHHHhcccCCCcEEEEEeCCCCCch-----HHHhhhhccC-C-CceEEEecccc
Q 003950 226 DAINDLERLLKPIRPEAILLVLDDVWSGSE-----SLLQKFKFQL-P-YYKILVTSRSV 277 (784)
Q Consensus 226 ~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~-----~~~~~~~~~~-~-gs~iivTtR~~ 277 (784)
....+.-.+...+...+-++++|+.-..-+ .+...+.... . |..||++|.+.
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 222222222244567888999998754331 2333333222 2 66788888764
No 290
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.96 E-value=0.045 Score=51.70 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=56.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc---cccccc---cCC-ceEEEEeCCCCCHHHHHHHHHHHcCCCCC--C--CCChHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKD---DQVLGK---FKD-NIFFVTVSQTPNVKGIVQKVYQHKGYAVP--E--FQTDED 226 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~---~~~~~~---f~~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~--~~~~~~ 226 (784)
-.+++|+|+.|.|||||.+.+..+ ..+... |.. .+.|+ .+ .+.++.++.... . ......
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 468999999999999999988632 111111 111 12232 11 345555554321 1 111112
Q ss_pred HHHHHHHHhcccCCC--cEEEEEeCCCCCch-----HHHhhhhcc-CCCceEEEecccc
Q 003950 227 AINDLERLLKPIRPE--AILLVLDDVWSGSE-----SLLQKFKFQ-LPYYKILVTSRSV 277 (784)
Q Consensus 227 ~~~~l~~~~~~l~~k--r~LlVlDdv~~~~~-----~~~~~~~~~-~~gs~iivTtR~~ 277 (784)
...+.-.+...+-.+ +-++++|+.-..-+ .+...+... ..|..||++|.+.
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 222222222444556 77889998744331 133333322 2466788888764
No 291
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.92 E-value=0.018 Score=62.26 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
++.++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999888776
No 292
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.89 E-value=0.047 Score=56.06 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=36.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
..++.|.|.+|+||||++.+++. .........++|+++.. ...++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~--~~~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYAL--DLITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH--HHHHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 45889999999999999998876 33223344577888755 355666666554
No 293
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.88 E-value=0.043 Score=51.93 Aligned_cols=24 Identities=46% Similarity=0.567 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|..|.|||||++.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 456999999999999999999886
No 294
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.035 Score=58.70 Aligned_cols=89 Identities=19% Similarity=0.253 Sum_probs=52.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccC-CceEEEEeCC-CCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFK-DNIFFVTVSQ-TPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 235 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 235 (784)
..++.++|+.|+||||++..+.. .....+. ..+..++... .....+-++...+.++.+........+... .+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~----~l 210 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL----AL 210 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH----HH
Confidence 46999999999999999999987 3322332 2354555322 224556666666777665433333333222 23
Q ss_pred cccCCCcEEEEEeCCCCC
Q 003950 236 KPIRPEAILLVLDDVWSG 253 (784)
Q Consensus 236 ~~l~~kr~LlVlDdv~~~ 253 (784)
..+.++ -+|++|..-..
T Consensus 211 ~~l~~~-DlVLIDTaG~~ 227 (374)
T PRK14722 211 AELRNK-HMVLIDTIGMS 227 (374)
T ss_pred HHhcCC-CEEEEcCCCCC
Confidence 333454 45669987543
No 295
>PHA00729 NTP-binding motif containing protein
Probab=95.82 E-value=0.012 Score=57.29 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=27.6
Q ss_pred HHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 148 ELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 148 ~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+++.+...+...|.|+|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 345556666777899999999999999999987
No 296
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.81 E-value=0.039 Score=51.51 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC
Q 003950 160 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP 201 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~ 201 (784)
++.|+|.+|+||||++..+.. .... ....+++++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~-~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIAT-KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHh-cCCEEEEEECCcch
Confidence 478999999999999999987 3322 34447788776554
No 297
>PRK14974 cell division protein FtsY; Provisional
Probab=95.81 E-value=0.052 Score=56.78 Aligned_cols=92 Identities=17% Similarity=0.133 Sum_probs=48.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC--CHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP--NVKGIVQKVYQHKGYAVPEFQTDEDAINDLERL 234 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 234 (784)
+..+|.++|++|+||||++..++. ..... ..++..+. .+.+ ...+.++...+.++.+........+....+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~-g~~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKN-GFSVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHc-CCeEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 468999999999999998888776 33322 12243443 2333 233345556666665432221111111112222
Q ss_pred hcc--cCCCcEEEEEeCCCCC
Q 003950 235 LKP--IRPEAILLVLDDVWSG 253 (784)
Q Consensus 235 ~~~--l~~kr~LlVlDdv~~~ 253 (784)
++. ..+.. +|++|-+...
T Consensus 215 i~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 215 IEHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HHHHHhCCCC-EEEEECCCcc
Confidence 211 12333 8889988554
No 298
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.80 E-value=0.54 Score=48.51 Aligned_cols=158 Identities=7% Similarity=0.052 Sum_probs=91.2
Q ss_pred hHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccc--------c-cccCCceEEEEe-CCCCCHHHHHHHHHHHc
Q 003950 146 LQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQV--------L-GKFKDNIFFVTV-SQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 146 ~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~--------~-~~f~~~~~wv~~-~~~~~~~~~~~~i~~~l 214 (784)
++.+...+..+. .++..++|..|.||+++|..+.+ .+ . +..+..+.+++. +.....+++ +.+.+.+
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~--~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~ 81 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLN--KFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKL 81 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHH--HHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHh
Confidence 344555555544 56777999999999999998876 32 1 111211333322 111222222 2233322
Q ss_pred CCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCch----HHHhhhhccCCCceEEEeccccc------ccCCC
Q 003950 215 GYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGSE----SLLQKFKFQLPYYKILVTSRSVF------PQFGS 283 (784)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~~----~~~~~~~~~~~gs~iivTtR~~~------~~~~~ 283 (784)
... .. .+++-++|+|++..... .++..+....+++.+|++|.+.. ...+.
T Consensus 82 ~~~-------------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~ 142 (299)
T PRK07132 82 YFS-------------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQ 142 (299)
T ss_pred ccC-------------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeE
Confidence 211 11 25778889999866553 25666666666777777665541 22344
Q ss_pred ceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 284 GYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 284 ~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
.+++.++++++..+.+.... . .++.+..++...+|.=-|+..
T Consensus 143 ~~~f~~l~~~~l~~~l~~~~----~-----~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLSKN----K-----EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EEECCCCCHHHHHHHHHHcC----C-----ChhHHHHHHHHcCCHHHHHHH
Confidence 89999999999887776431 1 234566777777763345554
No 299
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.78 E-value=0.038 Score=56.81 Aligned_cols=87 Identities=22% Similarity=0.281 Sum_probs=46.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCCceEEEEeCCC-CCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQT-PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERL 234 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 234 (784)
..++++|+|++|+||||++..++.....+ +.+ .+..++.... ....+.+....+.++.+........ .+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~--~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~----~l~~~ 266 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK--KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPK----ELRKA 266 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC--eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHH----HHHHH
Confidence 35799999999999999999887632222 123 3546665321 1223334444444454432222222 23444
Q ss_pred hcccCCCcEEEEEeCC
Q 003950 235 LKPIRPEAILLVLDDV 250 (784)
Q Consensus 235 ~~~l~~kr~LlVlDdv 250 (784)
++.+.+ .=+|++|..
T Consensus 267 l~~~~~-~d~vliDt~ 281 (282)
T TIGR03499 267 LDRLRD-KDLILIDTA 281 (282)
T ss_pred HHHccC-CCEEEEeCC
Confidence 444443 347777753
No 300
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.74 E-value=0.03 Score=56.59 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=40.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc---cccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVL---GKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
..+.=|+|.+|+|||.|+.+++-...+. +..+.+++|++....+....+. +|++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 4688999999999999998876533332 2345679999998888887765 455554
No 301
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.73 E-value=0.012 Score=56.75 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 302
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.73 E-value=0.033 Score=54.01 Aligned_cols=106 Identities=11% Similarity=0.141 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH-HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK-GIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 237 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 237 (784)
.+|.|+|+.|.||||++..+.. .+......+++. +.+..... .-...+..+-.. ........+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t--~e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aL-- 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILT--IEDPIEFVHESKRSLINQREV----GLDTLSFENALKAAL-- 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEE--EcCCccccccCccceeeeccc----CCCccCHHHHHHHHh--
Confidence 4789999999999999998876 333333333322 22211100 000001111000 001122333344444
Q ss_pred cCCCcEEEEEeCCCCCchHHHhhhhccCCCceEEEeccc
Q 003950 238 IRPEAILLVLDDVWSGSESLLQKFKFQLPYYKILVTSRS 276 (784)
Q Consensus 238 l~~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~iivTtR~ 276 (784)
+..+=.|++|++.+.+ .....+.....|..++.|+-.
T Consensus 72 -r~~pd~ii~gEird~e-~~~~~l~~a~~G~~v~~t~Ha 108 (198)
T cd01131 72 -RQDPDVILVGEMRDLE-TIRLALTAAETGHLVMSTLHT 108 (198)
T ss_pred -cCCcCEEEEcCCCCHH-HHHHHHHHHHcCCEEEEEecC
Confidence 4456699999996443 223334444556666666644
No 303
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.73 E-value=0.046 Score=57.38 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=41.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc---cccCCceEEEEeCCCCCHHHHHHHHHHHcCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVL---GKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY 216 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 216 (784)
..++-|+|.+|+|||++|..++-..... +.-...++|++....+.++.+ .++++.++.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 5788999999999999998877432221 112335889999998888776 455666554
No 304
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.67 E-value=0.0078 Score=53.77 Aligned_cols=20 Identities=45% Similarity=0.581 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003950 161 IVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 161 v~I~G~~GiGKTtLa~~v~~ 180 (784)
|+|.|.+|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 305
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.66 E-value=0.019 Score=62.16 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=36.6
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHH
Confidence 46799999999998888754 4689999999999999999987
No 306
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.65 E-value=0.059 Score=52.12 Aligned_cols=31 Identities=39% Similarity=0.632 Sum_probs=24.9
Q ss_pred HHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 150 KLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 150 ~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+..+..++-+++.|.|.+|.||||+++.+..
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~ 40 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLLKALAE 40 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHHHHHHH
Confidence 3444455668899999999999999999876
No 307
>PTZ00035 Rad51 protein; Provisional
Probab=95.65 E-value=0.062 Score=56.58 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=39.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc---cccCCceEEEEeCCCCCHHHHHHHHHHHcCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVL---GKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY 216 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 216 (784)
..++.|+|.+|+|||+|+..++-..+.. +.-...++|++....++++.+ .++++.++.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 5889999999999999999886532221 112345779998777777764 444555443
No 308
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.64 E-value=0.11 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|..|.|||||++.+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 309
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.64 E-value=0.17 Score=57.02 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=39.5
Q ss_pred CCCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 136 PPVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
...++|....+.++.+.+. .....-|.|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 4568999999999998887 445678999999999999999999873
No 310
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.64 E-value=0.051 Score=57.09 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=40.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccc---cCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK---FKDNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
..++-|+|.+|+|||++|.+++-....... -...++|++..+.+++..+.+ +++.++
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 578999999999999999988753222211 123588999988888777654 344444
No 311
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.64 E-value=0.11 Score=51.72 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=31.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
..++.|.|.+|+||||+|.++... -.+.. .++++++.. .+..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g--~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG-FLQNG--YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHhCC--CcEEEEeCC--CCHHHHHHHH
Confidence 469999999999999998666542 22222 235566643 3456666665
No 312
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.64 E-value=0.046 Score=57.00 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=39.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccc---CCceEEEEeCCCCCHHHHHHHHHHHcCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF---KDNIFFVTVSQTPNVKGIVQKVYQHKGY 216 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 216 (784)
..++.|+|.+|+|||+|+..++......... ...++|++..+.+....+ .++++.++.
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 6899999999999999999887522221111 134789998887777763 445555543
No 313
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.59 E-value=0.036 Score=54.61 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 314
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.57 E-value=0.02 Score=54.21 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=32.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
..+|+|-||=|+||||||+.+.++ ++..++.-.+.+.+=+.....++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~------l~~~~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH------LGFKVFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH------hCCceeeecccCChHHHHHHHhH
Confidence 468999999999999999999983 33334455555554444444443
No 315
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.57 E-value=0.092 Score=52.07 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCC-----CCCHHHHHHHHHHHcCCCCCCC----CChHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ-----TPNVKGIVQKVYQHKGYAVPEF----QTDEDA 227 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~~----~~~~~~ 227 (784)
...+++|+|.+|.||||+++.+.. +...-.+.+ ++.-.+ .....+...++++..+...... ......
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i-~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEI-LFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceE-EEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 357999999999999999999985 333333334 333211 1123344556666665332110 001111
Q ss_pred HHHHHHHh--cccCCCcEEEEEeCCCC
Q 003950 228 INDLERLL--KPIRPEAILLVLDDVWS 252 (784)
Q Consensus 228 ~~~l~~~~--~~l~~kr~LlVlDdv~~ 252 (784)
+.+++. +.+.-++-++|.|..-+
T Consensus 114 --QrQRi~IARALal~P~liV~DEpvS 138 (268)
T COG4608 114 --QRQRIGIARALALNPKLIVADEPVS 138 (268)
T ss_pred --hhhhHHHHHHHhhCCcEEEecCchh
Confidence 122222 45578899999998643
No 316
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.55 E-value=0.0093 Score=57.75 Aligned_cols=21 Identities=48% Similarity=0.825 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 317
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.52 E-value=0.072 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|..|.|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 347899999999999999999986
No 318
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.51 E-value=0.01 Score=46.29 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|+|.|.+|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 319
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.51 E-value=0.0017 Score=66.89 Aligned_cols=226 Identities=15% Similarity=0.227 Sum_probs=139.5
Q ss_pred CCCceEEEEEecCCCC--cccChhccCCCCCcEEEeecccccCCcCcCccc-cCCCCCCCEEEeccc-CCCCc----ccc
Q 003950 519 EAPEVKVVVLNVRTKK--YTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQV-FGALSNLKRIRLEHV-SLPSL----TTV 590 (784)
Q Consensus 519 ~~~~l~~l~L~~~~~~--~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~l~~L~~L~L~~n-~l~~~----~~~ 590 (784)
.|+++..+.++++... ..+-....++++++.+...+|...+.+. +.. =+.+..+..+++..+ .+++. ...
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~--l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA--LLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH--HHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 4666666777766332 2233445566667777666543322211 000 122333445554444 34443 223
Q ss_pred ccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCC-Cccc-CCCCCCcEEEccCCCCCCC--Cchhcc
Q 003950 591 RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIEL-PDGL-CDIVSIKKLRITNCHKLSA--LPEGIG 666 (784)
Q Consensus 591 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i-~~l~~L~~L~L~~~~~~~~--lp~~l~ 666 (784)
.+..|+.|..+++.. ........+..+.++|++|-++.|+..+.. -..+ .+.++|+.+++..|..+.. +-..-.
T Consensus 292 ~c~~lq~l~~s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTD--ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhHhhhhcccCCCC--CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 467788898888754 333344455567899999999999754321 1122 3678999999998765432 222223
Q ss_pred CCCCCCEEEeecCCCCCCC-----cccccCCCCCCEEeccCCCCCCc-cchhhhCCCCCCEEeccCCC-CC--CcChhhh
Q 003950 667 KLVNLQMLTLASCTDLSAL-----PDTIGNLSNLNFLDISECLNIQE-LPERIGELCSLKTLCLKGCS-MF--ELPSSIL 737 (784)
Q Consensus 667 ~l~~L~~L~L~~~~~~~~~-----p~~~~~l~~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~l~~n~-l~--~lp~~l~ 737 (784)
+.+.|+.|.+++|...... ...-..+..|..+.|++|+.+.. .-..+..+++|+.+++-+|. ++ .+...-.
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence 6789999999998766543 33345567899999999977653 33456788999999999998 44 3334457
Q ss_pred CCCCCCEEeCC
Q 003950 738 NLENLEVVKCD 748 (784)
Q Consensus 738 ~l~~L~~L~l~ 748 (784)
++|++++..+-
T Consensus 450 ~lp~i~v~a~~ 460 (483)
T KOG4341|consen 450 HLPNIKVHAYF 460 (483)
T ss_pred hCccceehhhc
Confidence 78888876543
No 320
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.49 E-value=0.091 Score=49.65 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|..|.|||||.+.++.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 356899999999999999999986
No 321
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.49 E-value=0.018 Score=55.16 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999886
No 322
>PTZ00301 uridine kinase; Provisional
Probab=95.47 E-value=0.019 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998876
No 323
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.0011 Score=64.58 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=63.3
Q ss_pred cccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCc--hhccCCC
Q 003950 592 MKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALP--EGIGKLV 669 (784)
Q Consensus 592 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~l~~l~ 669 (784)
+.+.++|++.+|.++.+. +...|+.|++|.|+-|++... ..+..|++|+.|+|..|. +..+. ..+.+++
T Consensus 18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~-I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNC-IESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCc
Confidence 344555666665554331 223677888888887765543 236677888888888765 33333 2456788
Q ss_pred CCCEEEeecCCCCCCCcc-----cccCCCCCCEEe
Q 003950 670 NLQMLTLASCTDLSALPD-----TIGNLSNLNFLD 699 (784)
Q Consensus 670 ~L~~L~L~~~~~~~~~p~-----~~~~l~~L~~L~ 699 (784)
+|++|.|..|...+.-+. .+.-|++|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888888877766543 345577777776
No 324
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.39 E-value=0.059 Score=50.43 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=56.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC--CCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT--PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERL 234 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 234 (784)
.-.+++|.|..|.|||||.+.++.- .....+.+ ++.-... .+..+..+ +.++.. ++.+..+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v-~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~la-- 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL---YKPDSGEI-LVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIA-- 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEE-EECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHH--
Confidence 3468999999999999999999862 22334433 4321111 11111111 111111 11111222111222
Q ss_pred hcccCCCcEEEEEeCCCCCch-----HHHhhhhcc-CCCceEEEecccc
Q 003950 235 LKPIRPEAILLVLDDVWSGSE-----SLLQKFKFQ-LPYYKILVTSRSV 277 (784)
Q Consensus 235 ~~~l~~kr~LlVlDdv~~~~~-----~~~~~~~~~-~~gs~iivTtR~~ 277 (784)
..+-.++-++++|+.-..-+ .+...+... ..|..||++|.+.
T Consensus 95 -ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 95 -RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred -HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34467788999999754332 233334322 2466788888765
No 325
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.38 E-value=0.052 Score=56.99 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCCcHH-HHHHHHhcccccccccCCceEEEEeCC-CCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh
Q 003950 158 RQVIVVSAPGGYGKT-TLVKKLCKDDQVLGKFKDNIFFVTVSQ-TPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 235 (784)
Q Consensus 158 ~~vv~I~G~~GiGKT-tLa~~v~~~~~~~~~f~~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 235 (784)
.++|.++|+.|+||| |||+..+.-....++.. +..++... .....+-++.-++-++.+..-..+..+....+..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~k--VaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKK--VAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcc--eEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 799999999999997 66666554211233333 44566532 22445555666666666554444444444333332
Q ss_pred cccCCCcEEEEEeCCC
Q 003950 236 KPIRPEAILLVLDDVW 251 (784)
Q Consensus 236 ~~l~~kr~LlVlDdv~ 251 (784)
+++ =+|.+|=+.
T Consensus 280 ---~~~-d~ILVDTaG 291 (407)
T COG1419 280 ---RDC-DVILVDTAG 291 (407)
T ss_pred ---hcC-CEEEEeCCC
Confidence 333 344556553
No 326
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.38 E-value=0.27 Score=55.87 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=38.6
Q ss_pred CCCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 136 PPVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
...++|....+.++.+.+. ......|.|+|..|+|||++|+.+++.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4578999999999988887 334556789999999999999999873
No 327
>PRK08233 hypothetical protein; Provisional
Probab=95.37 E-value=0.013 Score=55.99 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999986
No 328
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.36 E-value=0.032 Score=59.23 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=35.4
Q ss_pred CCCCCCCchhHHHHHHHHhC--------------CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKD--------------GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~--------------~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+++|.++.+..+.-.+... ..+-|.++|++|+|||++|+.+..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 46789988888887666521 146789999999999999999987
No 329
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.32 E-value=0.031 Score=55.24 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|.|.|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999886
No 330
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.30 E-value=0.022 Score=52.03 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=26.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEE
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVT 196 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~ 196 (784)
..+|.|.|.+|.||||||+++.. ++...-.. +++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~-~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIK-VYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS--EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCc-EEEec
Confidence 36899999999999999999998 55444333 55665
No 331
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.30 E-value=0.022 Score=58.67 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=50.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC-----CCChHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPE-----FQTDEDAINDLE 232 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 232 (784)
.+++-|+|..|+||||||..+.. ..... +..++|++....+++.. +++++.+... ....++....+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia--~~q~~-g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIA--EAQKQ-GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHT-T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHH--hhhcc-cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 47999999999999999998886 33333 44578999877766543 3444432211 123455555555
Q ss_pred HHhcccCCCcEEEEEeCCCC
Q 003950 233 RLLKPIRPEAILLVLDDVWS 252 (784)
Q Consensus 233 ~~~~~l~~kr~LlVlDdv~~ 252 (784)
.+++ .+..-++|+|.|-.
T Consensus 125 ~lir--sg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIR--SGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHH--TTSESEEEEE-CTT
T ss_pred HHhh--cccccEEEEecCcc
Confidence 5553 34556899998843
No 332
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.30 E-value=0.015 Score=57.09 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+..+|+|.|.+|+||||||+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 333
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.29 E-value=0.1 Score=54.99 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=35.0
Q ss_pred CCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 139 TPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 139 ~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
++|....+.++.+.+. .....-|.|+|..|+||+++|+.++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 4788888888888877 33456689999999999999999986
No 334
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.21 Score=52.78 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.++|+++|++|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999999876
No 335
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.23 E-value=0.24 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+++|+|+.|.|||||.+.+..
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 37999999999999999999876
No 336
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.23 E-value=0.015 Score=53.12 Aligned_cols=21 Identities=48% Similarity=0.849 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
No 337
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.22 E-value=0.33 Score=54.18 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....|+|+|+.|+|||||.+.+..
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g 370 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAG 370 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346799999999999999999954
No 338
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.21 E-value=0.31 Score=51.50 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=72.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeC-CCCCHHHHHHHHHHHcCCCCCC----------------
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS-QTPNVKGIVQKVYQHKGYAVPE---------------- 220 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~---------------- 220 (784)
+.||-.+|.-|.||||-|-.+++ .++. ....+..|.+. ..+..-+-++.+.++.+.+...
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 68999999999999999988876 3443 44444444432 1223444556666666543211
Q ss_pred -----------------CCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch-HHHhhhhccCCCceEEEecccc
Q 003950 221 -----------------FQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE-SLLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 221 -----------------~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~-~~~~~~~~~~~gs~iivTtR~~ 277 (784)
...+++..+.+.++.+.++....|+|+|-.--.+. .....|....+=+-||+|-=+-
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccC
Confidence 11133444556666566678888999987644332 2556677777667788885543
No 339
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.20 E-value=0.053 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|..|.|||||++.+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999985
No 340
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=95.19 E-value=0.1 Score=46.49 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCcEEEEEEcCCCCcHHH--HHHHHhcccccccccCCceEEEEeCCC
Q 003950 147 QELKLELFKDGRQVIVVSAPGGYGKTT--LVKKLCKDDQVLGKFKDNIFFVTVSQT 200 (784)
Q Consensus 147 ~~l~~~L~~~~~~vv~I~G~~GiGKTt--La~~v~~~~~~~~~f~~~~~wv~~~~~ 200 (784)
+-+-+.+..++.++|||-||+-+|||. +|..||.+. . |.-+|+.
T Consensus 43 DFmaEl~K~~Gh~lIGiRGmPRVGKTEsivAasVcAnK---------r-W~f~SST 88 (192)
T PF11868_consen 43 DFMAELFKEEGHKLIGIRGMPRVGKTESIVAASVCANK---------R-WLFLSST 88 (192)
T ss_pred HHHHHHHHhcCceEEeecCCCccCchhHHHHHhhhcCc---------e-EEEeeHH
Confidence 344445558899999999999999994 556666531 2 8888754
No 341
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.064 Score=50.80 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|..|.|||||++.++.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999986
No 342
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.18 E-value=0.08 Score=49.62 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=33.1
Q ss_pred CCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 139 TPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 139 ~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+||....+.++.+.+. .....-|.|+|..|+||+.+|+.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4788899999988887 33346677999999999999999997
No 343
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.17 E-value=0.1 Score=50.49 Aligned_cols=42 Identities=21% Similarity=0.461 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccc-------CCceEEEEeCCC
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-------KDNIFFVTVSQT 200 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-------~~~~~wv~~~~~ 200 (784)
.++.|.|.+|+||||++..+..+......| +.+++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 589999999999999999887643222222 346888887655
No 344
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.16 E-value=0.017 Score=56.56 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|+|++|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 345
>PRK06762 hypothetical protein; Provisional
Probab=95.14 E-value=0.017 Score=54.35 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 346
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.15 Score=57.32 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=80.1
Q ss_pred CCCCCCchhHHHHHHHH------h-------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 138 VTPGLDVPLQELKLELF------K-------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~------~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
.+.|.+...+.+.+.+. . ...+.+.++|++|.|||.||+++++ .....| +.+...
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~f------i~v~~~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF------ISVKGS---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE------EEeeCH----
Confidence 34556666555554443 1 2356899999999999999999998 333333 222111
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc-----------hHHHhhh----hccCC--
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS-----------ESLLQKF----KFQLP-- 266 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~-----------~~~~~~~----~~~~~-- 266 (784)
+ ++... ..+....+++.+ ...+..++.|.+|++.... ......+ .....
T Consensus 311 ~----l~sk~---------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 311 E----LLSKW---------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE 377 (494)
T ss_pred H----Hhccc---------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence 1 11110 111223334444 2236789999999984211 1122222 21222
Q ss_pred CceEEEeccccc-------c--cCCCceeccCCCHHHHHHHHHHHhccC
Q 003950 267 YYKILVTSRSVF-------P--QFGSGYDLKPLNDEAARTLFRYSANLQ 306 (784)
Q Consensus 267 gs~iivTtR~~~-------~--~~~~~~~l~~L~~~~a~~lf~~~a~~~ 306 (784)
+..||-||.... . .....+.+++-+.++..+.|..+....
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 333444554431 1 234478899999999999999887543
No 347
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.13 E-value=0.089 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|..|.|||||++.+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999986
No 348
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.12 E-value=0.36 Score=50.28 Aligned_cols=49 Identities=27% Similarity=0.378 Sum_probs=34.7
Q ss_pred ceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHH
Q 003950 284 GYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLAL 332 (784)
Q Consensus 284 ~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 332 (784)
+++++.++.+|+..++...+-.+-.......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 5789999999999998876644332222334667777777789999654
No 349
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.17 Score=56.93 Aligned_cols=92 Identities=20% Similarity=0.315 Sum_probs=59.7
Q ss_pred CCCCCCCchhHHHHHHHH---------hCC---cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 137 PVTPGLDVPLQELKLELF---------KDG---RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~---------~~~---~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
+++=|.++.+.+|.+-+. ..+ ..-|.++|++|.|||-+|++|+. .|. .-+++|...
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT------Ecs--L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT------ECS--LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh------hce--eeEEeecCH----
Confidence 355678888888877664 223 45789999999999999999997 233 336666432
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCC
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSG 253 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~ 253 (784)
+++..-. | +..+.+++.+ +.-..++|+|.||.+++.
T Consensus 740 ELLNMYV---G----------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNMYV---G----------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHHh---c----------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 2332222 1 1123455555 333678999999998653
No 350
>PRK14527 adenylate kinase; Provisional
Probab=95.06 E-value=0.077 Score=51.17 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|.|+|++|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 351
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.06 E-value=0.056 Score=55.08 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=34.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH--HHHHHHHHHHcC
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV--KGIVQKVYQHKG 215 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~--~~~~~~i~~~l~ 215 (784)
+.+++.++|++|+||||++..++. ..... ..++.+++.. .+.. .+-+....+..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~-g~~V~li~~D-~~r~~a~~ql~~~~~~~~ 127 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQ-GKSVLLAAGD-TFRAAAIEQLEEWAKRLG 127 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhc-CCEEEEEeCC-CCCHHHHHHHHHHHHhCC
Confidence 468999999999999999988876 33322 2346566653 2322 233444455554
No 352
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.05 E-value=0.096 Score=55.17 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=37.5
Q ss_pred CCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|....+.++.+.+. .....-|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 458999999999988887 34456789999999999999999985
No 353
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.04 E-value=0.16 Score=49.27 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
++++|.|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 8999999999999999998864
No 354
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.01 E-value=0.15 Score=54.64 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|++|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 46899999999999999998853
No 355
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.99 E-value=0.0095 Score=34.45 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=12.1
Q ss_pred CCCEEeccCCCCCCcChhhhC
Q 003950 718 SLKTLCLKGCSMFELPSSILN 738 (784)
Q Consensus 718 ~L~~L~l~~n~l~~lp~~l~~ 738 (784)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 356
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.99 E-value=0.082 Score=56.46 Aligned_cols=90 Identities=22% Similarity=0.267 Sum_probs=51.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCCceEEEEeCCCCC--HHHHHHHHHHHcCCCCCCCCChHHHHHHHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPN--VKGIVQKVYQHKGYAVPEFQTDEDAINDLER 233 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 233 (784)
..++|.++|+.|+||||.+..++....... +-...+..+++. .+. ...-++...+.++.+....... ..+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~----~~l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESF----KDLKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcH----HHHHH
Confidence 357999999999999999988876322211 122335455553 332 3333556666666543322222 23334
Q ss_pred HhcccCCCcEEEEEeCCCC
Q 003950 234 LLKPIRPEAILLVLDDVWS 252 (784)
Q Consensus 234 ~~~~l~~kr~LlVlDdv~~ 252 (784)
.+..+ .+.-+|++|.+..
T Consensus 248 ~L~~~-~~~DlVLIDTaGr 265 (388)
T PRK12723 248 EITQS-KDFDLVLVDTIGK 265 (388)
T ss_pred HHHHh-CCCCEEEEcCCCC
Confidence 33333 3456888898744
No 357
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.97 E-value=0.047 Score=57.99 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=48.4
Q ss_pred CCCCCCCchhHHHHHHHHhC--------------CcEEEEEEcCCCCcHHHHHHHHhccccccccc---CCceEEEEeCC
Q 003950 137 PVTPGLDVPLQELKLELFKD--------------GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF---KDNIFFVTVSQ 199 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~--------------~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~~wv~~~~ 199 (784)
..++|.+..+..+..++... ..+.|.++|++|+|||++|+.+.. .+...| +...||-.-..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhccCCcc
Confidence 46799999999888877530 136789999999999999999987 332222 22122221111
Q ss_pred CCCHHHHHHHHHHH
Q 003950 200 TPNVKGIVQKVYQH 213 (784)
Q Consensus 200 ~~~~~~~~~~i~~~ 213 (784)
..+.+.+++.+...
T Consensus 93 G~d~e~~ir~L~~~ 106 (443)
T PRK05201 93 GRDVESIIRDLVEI 106 (443)
T ss_pred cCCHHHHHHHHHHH
Confidence 23556666666654
No 358
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.97 E-value=0.049 Score=53.41 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999874
No 359
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.093 Score=51.02 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=32.8
Q ss_pred CCCCCCchhHHHHHHHH-------------hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 138 VTPGLDVPLQELKLELF-------------KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~-------------~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+-|-.++++++.+... -+..+-|..+|++|.|||-+|++|+|
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 34466667777766543 13367899999999999999999998
No 360
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.96 E-value=0.15 Score=51.14 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=33.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
..++.|.|.+|+|||++|.++... ..+. ...++|++..+ ++.++.+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~-~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWN-GLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH-HHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 589999999999999999886542 2222 23367888755 455555553
No 361
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.95 E-value=0.024 Score=66.34 Aligned_cols=184 Identities=15% Similarity=0.252 Sum_probs=86.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCC---CCCCChHHHHHHHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAV---PEFQTDEDAINDLER 233 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 233 (784)
+.+++.|+|+.|.||||+.+.+.... +.. ..++ ++.+..... -..+.++...++... ............+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~-l~a--q~G~-~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLA-LMF--QSGI-PIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHH-HHH--HhCC-CccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 45799999999999999999886520 000 0101 222211100 000111111111000 001112223344555
Q ss_pred HhcccCCCcEEEEEeCCCCCch-----HHHhhh-hc-cCCCceEEEecccccc-----cCCCc--eeccCCCHHHHHHHH
Q 003950 234 LLKPIRPEAILLVLDDVWSGSE-----SLLQKF-KF-QLPYYKILVTSRSVFP-----QFGSG--YDLKPLNDEAARTLF 299 (784)
Q Consensus 234 ~~~~l~~kr~LlVlDdv~~~~~-----~~~~~~-~~-~~~gs~iivTtR~~~~-----~~~~~--~~l~~L~~~~a~~lf 299 (784)
++..+ .++-|+++|......+ .+...+ .. ...|+.+|+||..... ....+ +.+. ++.+ ... |
T Consensus 396 il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~-p 471 (771)
T TIGR01069 396 ILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS-P 471 (771)
T ss_pred HHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-e
Confidence 55443 5789999999865432 121111 11 1357899999987521 00111 1110 1110 000 0
Q ss_pred HHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCCChHHHHHHHHhhc
Q 003950 300 RYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVKEWT 355 (784)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~~~~~w~~~l~~~~ 355 (784)
..+ +..+ .+-...|-.|++++ |+|-.+.--|..+.+.........+.++.
T Consensus 472 ~Yk-l~~G----~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 472 TYK-LLKG----IPGESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred EEE-ECCC----CCCCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 000 0111 11245677888877 78888887777765554445555555543
No 362
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.93 E-value=0.071 Score=55.05 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHH
Q 003950 132 APDPPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGI 206 (784)
Q Consensus 132 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~ 206 (784)
.|...+.++=..+....+..++..+ +.|.|.|.+|+||||+|+.++. ... ...+-|.++...+..++
T Consensus 40 ~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~--~l~----~~~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 40 VPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAA--RLN----WPCVRVNLDSHVSRIDL 106 (327)
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHH--HHC----CCeEEEEecCCCChhhc
Confidence 3444444555555666677777643 4699999999999999999987 332 22346666665555443
No 363
>PRK03839 putative kinase; Provisional
Probab=94.91 E-value=0.019 Score=54.82 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|.|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 364
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.91 E-value=0.036 Score=56.18 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=27.4
Q ss_pred HhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC
Q 003950 154 FKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFK 189 (784)
Q Consensus 154 ~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 189 (784)
...+..+|.|.|.+|.|||||+..+.+ .......
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~ 133 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP 133 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHH--HhccCCC
Confidence 355689999999999999999999987 4444443
No 365
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.87 E-value=0.022 Score=58.03 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 147 QELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 147 ~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+++.+...+ +-|.++|+.|+|||++++....
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhc
Confidence 44555555554 5669999999999999999876
No 366
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.86 E-value=0.014 Score=50.23 Aligned_cols=20 Identities=50% Similarity=0.750 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003950 161 IVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 161 v~I~G~~GiGKTtLa~~v~~ 180 (784)
|-|+|.+|+|||++|+.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999887
No 367
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.86 E-value=0.072 Score=57.70 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=54.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC-CHHHHHHHHHHHcCCC-------CCCCCChH---
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA-------VPEFQTDE--- 225 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 225 (784)
.-+.++|.|.+|+|||||+..+... .....+..++++-+++.. ...++++.+...-... ..+.+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3578999999999999999988763 222223335577776654 4566677666532110 01111111
Q ss_pred --HHHHHHHHHhcccCCCcEEEEEeCCC
Q 003950 226 --DAINDLERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 226 --~~~~~l~~~~~~l~~kr~LlVlDdv~ 251 (784)
...-.+.+.+..-+++.+||++|++-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 11122333432227899999999983
No 368
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.85 E-value=0.17 Score=58.57 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCCCCCCchhHHHHHHHH---h---------CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELF---K---------DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+.|.+...+++.+.+. . .-.+-|.++|++|+|||++|+.+..
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 345677766665555443 1 1134599999999999999999987
No 369
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.85 E-value=0.1 Score=48.97 Aligned_cols=82 Identities=13% Similarity=0.325 Sum_probs=48.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccC
Q 003950 160 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIR 239 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 239 (784)
++.|.|.+|+|||++|.++... ...+++++.-.+.++. ++.+.|.+......... ...+....+.+.++...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w-~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHW-RTIETPRDLVSALKELD 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCc-eEeecHHHHHHHHHhcC
Confidence 3679999999999999998752 2234667776666654 35555544332222222 22233334455443322
Q ss_pred CCcEEEEEeCC
Q 003950 240 PEAILLVLDDV 250 (784)
Q Consensus 240 ~kr~LlVlDdv 250 (784)
+.-.+++|.+
T Consensus 73 -~~~~VLIDcl 82 (169)
T cd00544 73 -PGDVVLIDCL 82 (169)
T ss_pred -CCCEEEEEcH
Confidence 3347999986
No 370
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.85 E-value=0.92 Score=46.43 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=40.3
Q ss_pred cCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCCceeccCCCHHHHHHHHH
Q 003950 238 IRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGSGYDLKPLNDEAARTLFR 300 (784)
Q Consensus 238 l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~~~~l~~L~~~~a~~lf~ 300 (784)
..+++-++|+|++...... ++..+-...+++.+|++|.+.. ..-...+.+.+ +.++..+.+.
T Consensus 101 ~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred ccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 3567789999999776643 6666766667788888887652 11223566766 5665555554
No 371
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.83 E-value=0.04 Score=55.87 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.|.|+|.+|+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4689999999999999999987
No 372
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.82 E-value=0.27 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-..|+|+|++|+|||||.+.++-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999864
No 373
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.80 E-value=0.054 Score=52.62 Aligned_cols=111 Identities=13% Similarity=0.247 Sum_probs=57.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC---CCCChHHHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP---EFQTDEDAINDLERL 234 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 234 (784)
.+++.|.|+.|.||||+.+.+.... +..+. ++ .+.... .. -.+...|...++.... ....-.....++...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~-~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GC-FVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CC-Ccchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 4789999999999999999886421 11111 11 221111 01 1222333333332211 111122233344444
Q ss_pred hcccCCCcEEEEEeCCCCCc---h------HHHhhhhccCCCceEEEecccc
Q 003950 235 LKPIRPEAILLVLDDVWSGS---E------SLLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 235 ~~~l~~kr~LlVlDdv~~~~---~------~~~~~~~~~~~gs~iivTtR~~ 277 (784)
+. +..++-|+++|+..... + .++..+. ..|+.+|+||-+.
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~ 151 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFR 151 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChH
Confidence 43 24567899999984432 1 1223332 2378999999865
No 374
>PRK06217 hypothetical protein; Validated
Probab=94.79 E-value=0.047 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
.|.|.|.+|.||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 375
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.79 E-value=0.099 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|..|.|||||++.+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 357999999999999999999985
No 376
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.78 E-value=0.046 Score=56.46 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=39.7
Q ss_pred CCCCCCCCchhHHHHHHHH------hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 136 PPVTPGLDVPLQELKLELF------KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...++|.++.++++++.+. +..-+|+.++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998 23468999999999999999998876
No 377
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.48 Score=44.18 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcccCCCcEEEEEeCCCCCch----HHHhhhh--ccCCCceEEEeccccccc
Q 003950 226 DAINDLERLLKPIRPEAILLVLDDVWSGSE----SLLQKFK--FQLPYYKILVTSRSVFPQ 280 (784)
Q Consensus 226 ~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~----~~~~~~~--~~~~gs~iivTtR~~~~~ 280 (784)
+..-.+.+++ -.++-|-+||.....-+ ..+..+. ....|..||.||-.+...
T Consensus 136 qRRvAlArL~---ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 136 QRRVALARLW---LSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred HHHHHHHHHH---cCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 3333444444 57889999999865432 2344433 345688999999887443
No 378
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.78 E-value=0.088 Score=52.87 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=56.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccc--ccccCCceEEEEeCCCC-CHHHHHHHHHHHcCCC-------CCCCCChH--
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQV--LGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA-------VPEFQTDE-- 225 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-- 225 (784)
-+.++|.|-.|+|||+|+..+.++..+ +++-+. ++++-+++.. +..++.+.+.+.-... ..+.+...
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v-~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFA-VVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCE-EEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 467899999999999999998874331 112233 6688887764 5666777666542110 00111111
Q ss_pred ---HHHHHHHHHhcccCCCcEEEEEeCCCC
Q 003950 226 ---DAINDLERLLKPIRPEAILLVLDDVWS 252 (784)
Q Consensus 226 ---~~~~~l~~~~~~l~~kr~LlVlDdv~~ 252 (784)
...-.+.+.+..-+++++|+++||+..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 111234444422248999999999843
No 379
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.75 E-value=0.076 Score=54.32 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999987764
No 380
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.75 E-value=0.014 Score=50.93 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcccccccccC
Q 003950 161 IVVSAPGGYGKTTLVKKLCKDDQVLGKFK 189 (784)
Q Consensus 161 v~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 189 (784)
|.|+|.+|+||||+|+.++. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 5666664
No 381
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.0012 Score=64.28 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=66.9
Q ss_pred CCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccccCCc
Q 003950 544 MDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPN 622 (784)
Q Consensus 544 l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 622 (784)
+.+.+.|+..++|. .++..+.+++.|+.|.|+-|.|+.+ +...+.+|+.|.|..|.+..+... ....++|+
T Consensus 18 l~~vkKLNcwg~~L-----~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL---~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL-----DDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL---EYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCc-----cHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH---HHHhcCch
Confidence 45566677776544 3333367788888888888888888 667788888888888876554332 22347788
Q ss_pred eEEEEEeCCCCCCCCCc-----ccCCCCCCcEEE
Q 003950 623 LLEIDIDYCNDLIELPD-----GLCDIVSIKKLR 651 (784)
Q Consensus 623 L~~L~L~~~~~~~~lp~-----~i~~l~~L~~L~ 651 (784)
|++|.|..|...+.-+. .+.-|++|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888887766655433 233466666665
No 382
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.72 E-value=0.16 Score=53.46 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=50.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC-CCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 235 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 235 (784)
+.+++.|+|+.|+||||++..++.. .... ..++.+++.... ....+-++...+.++.+.....+..+. ...+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~-g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL----~~al 277 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQ-NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAEL----EEAV 277 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHH----HHHH
Confidence 3689999999999999999988763 2211 233656665322 223445555666665443222233333 2322
Q ss_pred cccC--CCcEEEEEeCCCC
Q 003950 236 KPIR--PEAILLVLDDVWS 252 (784)
Q Consensus 236 ~~l~--~kr~LlVlDdv~~ 252 (784)
+.++ +..=+|++|-.-.
T Consensus 278 ~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHHhcCCCCEEEEECCCC
Confidence 2222 3446777887644
No 383
>PRK04040 adenylate kinase; Provisional
Probab=94.70 E-value=0.026 Score=54.11 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 384
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.028 Score=54.05 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=24.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK 187 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~ 187 (784)
.+.+|+|.|.+|.||||+|+.++. .+..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcC
Confidence 357899999999999999999987 44433
No 385
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.69 E-value=0.11 Score=56.58 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=45.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc-cccCCceEEEEeCCCC-CHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 235 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 235 (784)
.+++.++|++|+||||++..++. ... .+-..++..++..... ...+.+....+.++.+........+ +...+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~--~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~----l~~~l 294 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA--RYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKE----LAKAL 294 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHh----HHHHH
Confidence 46899999999999999888765 222 1112235566653211 1222333444445443322222222 23333
Q ss_pred cccCCCcEEEEEeCCC
Q 003950 236 KPIRPEAILLVLDDVW 251 (784)
Q Consensus 236 ~~l~~kr~LlVlDdv~ 251 (784)
+.+. ..=+|++|..-
T Consensus 295 ~~~~-~~DlVlIDt~G 309 (424)
T PRK05703 295 EQLR-DCDVILIDTAG 309 (424)
T ss_pred HHhC-CCCEEEEeCCC
Confidence 2233 35678888663
No 386
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.67 E-value=0.11 Score=57.09 Aligned_cols=88 Identities=26% Similarity=0.339 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCC-CCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQ-TPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 235 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 235 (784)
..+|+|+|.+|+||||++..+.. ...... ..++..++... .....+.+....+.++.......... .+...+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa--~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~----~L~~aL 423 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ--RFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAE----SLLDLL 423 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHH----HHHHHH
Confidence 57999999999999999988876 332222 22354555422 11222333333344443322222222 233344
Q ss_pred cccCCCcEEEEEeCCCC
Q 003950 236 KPIRPEAILLVLDDVWS 252 (784)
Q Consensus 236 ~~l~~kr~LlVlDdv~~ 252 (784)
+.+.+ .=+|++|..-.
T Consensus 424 ~~l~~-~DLVLIDTaG~ 439 (559)
T PRK12727 424 ERLRD-YKLVLIDTAGM 439 (559)
T ss_pred HHhcc-CCEEEecCCCc
Confidence 33333 45888888743
No 387
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.66 E-value=0.031 Score=65.69 Aligned_cols=173 Identities=17% Similarity=0.257 Sum_probs=86.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccc--------------cccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCC
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQ--------------VLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQ 222 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~--------------~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 222 (784)
+.+++.|.|+.+.||||+.+.+.-..- .-..|+. + +..++...+...-+ .
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i-~~~ig~~~si~~~l--------------S 389 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-I-FADIGDEQSIEQSL--------------S 389 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-E-EEecCCccchhhch--------------h
Confidence 467899999999999999998753100 0011221 1 33333222221111 1
Q ss_pred ChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch-----HHHhhhh-c-cCCCceEEEeccccccc-----CCC--ceecc
Q 003950 223 TDEDAINDLERLLKPIRPEAILLVLDDVWSGSE-----SLLQKFK-F-QLPYYKILVTSRSVFPQ-----FGS--GYDLK 288 (784)
Q Consensus 223 ~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~-----~~~~~~~-~-~~~gs~iivTtR~~~~~-----~~~--~~~l~ 288 (784)
........+..++..+ .++-|+++|......+ .+...+. . ...|+.+|+||...... ... ...+.
T Consensus 390 tfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~ 468 (782)
T PRK00409 390 TFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE 468 (782)
T ss_pred HHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE
Confidence 1223334444455444 5778999999865432 1222211 1 23478999999875210 011 11111
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCCChHHHHHHHHhhc
Q 003950 289 PLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVKEWT 355 (784)
Q Consensus 289 ~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~~~~~w~~~l~~~~ 355 (784)
++. +... | .+-+..+ .+-...|-+|++++ |+|-.+..-|..+.+.........+.++.
T Consensus 469 -~d~-~~l~-~-~Ykl~~G----~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 469 -FDE-ETLR-P-TYRLLIG----IPGKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred -Eec-CcCc-E-EEEEeeC----CCCCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 111 1100 0 0111111 11245677888887 78888887777765555445555555544
No 388
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.37 Score=46.84 Aligned_cols=50 Identities=28% Similarity=0.379 Sum_probs=38.8
Q ss_pred CCCCCCCchhHHHHHHHH-----h--------CCcEEEEEEcCCCCcHHHHHHHHhccccccccc
Q 003950 137 PVTPGLDVPLQELKLELF-----K--------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF 188 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~-----~--------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f 188 (784)
..+-|.+..++++++.+. . ..++-|..+|++|.|||-+|++.+. +...-|
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa--qT~aTF 233 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA--QTNATF 233 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH--hccchH
Confidence 456788999999998875 1 1257799999999999999999987 444344
No 389
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.65 E-value=0.092 Score=52.55 Aligned_cols=48 Identities=17% Similarity=0.382 Sum_probs=34.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
.+++.|+|.+|+|||++|.++... ..+. ...++|++..+. +.++.+.+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~-~~~~--g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYG-ALKQ--GKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH-HHhC--CCEEEEEEcCCC--HHHHHHHH
Confidence 579999999999999999998542 2222 334778888654 45555554
No 390
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.64 E-value=0.13 Score=51.29 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=33.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
..++.|.|.+|+||||+|.++... ... . ...++|++.... ..++.+. +++++
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~-~~~-~-g~~~~~is~e~~--~~~i~~~-~~~~g 71 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYK-GLR-D-GDPVIYVTTEES--RESIIRQ-AAQFG 71 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHH-HHh-c-CCeEEEEEccCC--HHHHHHH-HHHhC
Confidence 579999999999999999987642 122 2 234678877443 3444333 33443
No 391
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.64 E-value=0.048 Score=52.40 Aligned_cols=43 Identities=33% Similarity=0.465 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 160 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
.|+|+|-||+||||+|..+.. ++...=...++-|+...+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~--~l~~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK--RLLSKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH--HHHhcCCceEEEEeCCCCCChH
Confidence 589999999999999988555 3322211235567766655543
No 392
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.63 E-value=0.25 Score=50.12 Aligned_cols=121 Identities=13% Similarity=0.102 Sum_probs=61.3
Q ss_pred hHHHHHHHH-hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEE---eCCCCCHHHHHHHHHHHcCC-CCCC
Q 003950 146 LQELKLELF-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVT---VSQTPNVKGIVQKVYQHKGY-AVPE 220 (784)
Q Consensus 146 ~~~l~~~L~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~---~~~~~~~~~~~~~i~~~l~~-~~~~ 220 (784)
.+.++..|. .....-++|+|..|.|||||.+.+.. .+... .. -+++. +.......++ ...... +...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~--~~~~~-~G-~i~~~g~~v~~~d~~~ei----~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLAR--ILSTG-IS-QLGLRGKKVGIVDERSEI----AGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhC--ccCCC-Cc-eEEECCEEeecchhHHHH----HHHhccccccc
Confidence 444555555 34457899999999999999999987 33322 22 22332 2111112222 222211 1110
Q ss_pred ------CCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhhccCCCceEEEecccc
Q 003950 221 ------FQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 221 ------~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~iivTtR~~ 277 (784)
..+.......+...+. ...+-++++|.+-.... +...+.....|..+|+||-+.
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~--~~~P~villDE~~~~e~-~~~l~~~~~~G~~vI~ttH~~ 229 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIR--SMSPDVIVVDEIGREED-VEALLEALHAGVSIIATAHGR 229 (270)
T ss_pred ccccccccccchHHHHHHHHHH--hCCCCEEEEeCCCcHHH-HHHHHHHHhCCCEEEEEechh
Confidence 0011111222333332 24788999999854432 222222223578899999753
No 393
>PRK00625 shikimate kinase; Provisional
Probab=94.61 E-value=0.025 Score=53.27 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 394
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.57 E-value=0.058 Score=56.36 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003950 161 IVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 161 v~I~G~~GiGKTtLa~~v~~ 180 (784)
+++.|++|.||||+++.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999987
No 395
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.56 E-value=0.075 Score=56.70 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++.++|++|+||||+|..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 396
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.28 Score=57.25 Aligned_cols=105 Identities=15% Similarity=0.259 Sum_probs=61.6
Q ss_pred CCCCCCCchhHHHHHHHHh------C--CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELFK------D--GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQ 208 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~------~--~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 208 (784)
..++|-++.+..|.+.+.. + ......+.|+.|+|||.||++++. .+-+..+. .+-++.|+ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~-~IriDmse------~~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEEN-FIRLDMSE------FQE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccc-eEEechhh------hhh
Confidence 3468888888888888772 1 356788999999999999999987 44344443 22333332 222
Q ss_pred HHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcE-EEEEeCCCCCchH
Q 003950 209 KVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAI-LLVLDDVWSGSES 256 (784)
Q Consensus 209 ~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~-LlVlDdv~~~~~~ 256 (784)
...+.+..+..... +...+|.+.+ +.++| +|+||||...+..
T Consensus 633 --vskligsp~gyvG~-e~gg~Lteav---rrrP~sVVLfdeIEkAh~~ 675 (898)
T KOG1051|consen 633 --VSKLIGSPPGYVGK-EEGGQLTEAV---KRRPYSVVLFEEIEKAHPD 675 (898)
T ss_pred --hhhccCCCcccccc-hhHHHHHHHH---hcCCceEEEEechhhcCHH
Confidence 22332222222222 2222344333 56665 5557999776644
No 397
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.54 E-value=0.095 Score=57.02 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=53.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC-CHHHHHHHHHHHcCCC-------CCCCCChH---
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA-------VPEFQTDE--- 225 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 225 (784)
.-+.++|.|.+|+|||||+..+.+. ........++++-+++.. ...++...+...-... ..+.+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~--~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFN--ISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHH--HHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 3578999999999999999888873 332233335566676543 4566666665432110 00111111
Q ss_pred --HHHHHHHHHhcccCCCcEEEEEeCCCC
Q 003950 226 --DAINDLERLLKPIRPEAILLVLDDVWS 252 (784)
Q Consensus 226 --~~~~~l~~~~~~l~~kr~LlVlDdv~~ 252 (784)
...-.+.+.+..-+++.+|+++|++-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 111223333322248999999999843
No 398
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.53 E-value=0.11 Score=52.87 Aligned_cols=119 Identities=17% Similarity=0.202 Sum_probs=60.6
Q ss_pred CCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC
Q 003950 140 PGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP 219 (784)
Q Consensus 140 vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 219 (784)
.|...+..+....+......+|.|.|..|.||||++.++.. .+.. ...+++.+.-+....... ..++....
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~--~i~~-~~~~iitiEdp~E~~~~~-----~~q~~v~~- 132 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALS--ELNT-PEKNIITVEDPVEYQIPG-----INQVQVNE- 132 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHh--hhCC-CCCeEEEECCCceecCCC-----ceEEEeCC-
Confidence 45555544444444445567899999999999999998876 3322 222232322111111110 01111110
Q ss_pred CCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhhccCCCceEEEec
Q 003950 220 EFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQLPYYKILVTS 274 (784)
Q Consensus 220 ~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~iivTt 274 (784)
.......+.++..+ +..+=.|+++++.+.+. ....+.....|-. ++||
T Consensus 133 --~~~~~~~~~l~~~l---R~~PD~i~vgEiR~~e~-a~~~~~aa~tGh~-v~tT 180 (264)
T cd01129 133 --KAGLTFARGLRAIL---RQDPDIIMVGEIRDAET-AEIAVQAALTGHL-VLST 180 (264)
T ss_pred --cCCcCHHHHHHHHh---ccCCCEEEeccCCCHHH-HHHHHHHHHcCCc-EEEE
Confidence 01112334444444 66777889999976543 2333444445544 4554
No 399
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.52 E-value=0.071 Score=56.41 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=47.4
Q ss_pred CCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHH
Q 003950 138 VTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQ 208 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 208 (784)
.++|.++.+..+...+..+ +-+.+.|.+|+|||+||+.++. ... ...+++.+.....+.++.-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~--~l~----~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALAR--ALG----LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHH--HhC----CCeEEEecCCCCCHHHhcC
Confidence 4788888888777777644 4688999999999999999987 333 3355777777777766554
No 400
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.51 E-value=0.068 Score=57.32 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=28.4
Q ss_pred hHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 146 LQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 146 ~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+.+++.+.......+.|.|.||.|||+|.+++.+
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~ 44 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIID 44 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHH
Confidence 34455555556678899999999999999999987
No 401
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.49 E-value=0.063 Score=54.38 Aligned_cols=95 Identities=17% Similarity=0.252 Sum_probs=49.6
Q ss_pred CCCCCchhHH---HHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 139 TPGLDVPLQE---LKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 139 ~vGr~~~~~~---l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
+|=.++.++. |.+.|..++ .-..++|.||+||+|+++.++.- . +..++-+.++..++..+.-.+
T Consensus 10 lVlf~~ai~hi~ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~i---~---~~~~~~i~~~~~y~~~~f~~d------ 76 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLSQPR-GHALLVGVGGSGRQSLARLAAFI---C---GYEVFQIEITKGYSIKDFKED------ 76 (268)
T ss_dssp ----HHHHHHHHHHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHHH---T---TEEEE-TTTSTTTHHHHHHHH------
T ss_pred eeeHHHHHHHHHHHHHHHcCCC-CCeEEecCCCccHHHHHHHHHHH---h---ccceEEEEeeCCcCHHHHHHH------
Confidence 3444444444 334444444 45569999999999999987641 1 112333344455544443222
Q ss_pred CCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchHHHhhh
Q 003950 216 YAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSESLLQKF 261 (784)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~~~~~~ 261 (784)
++..+ ..+++++..++++|-.-.++.+++.+
T Consensus 77 ---------------Lk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~i 109 (268)
T PF12780_consen 77 ---------------LKKALQKAGIKGKPTVFLLTDSQIVDESFLEDI 109 (268)
T ss_dssp ---------------HHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHH
T ss_pred ---------------HHHHHHHHhccCCCeEEEecCcccchHhHHHHH
Confidence 22222 22378999999999766555545444
No 402
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.48 E-value=0.37 Score=53.96 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=36.7
Q ss_pred CCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 137 PVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
..++|....+.++.+.+. ......|.|.|.+|+|||++|+.+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 357999988888877776 334566899999999999999999873
No 403
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.48 E-value=0.024 Score=55.09 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|+|.|.+|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.45 E-value=0.034 Score=54.88 Aligned_cols=113 Identities=14% Similarity=0.168 Sum_probs=57.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC---CCCChHHHHHHHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP---EFQTDEDAINDLER 233 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 233 (784)
+.+++.|.|+.|.||||+.+.+... .+- +..++ ++..... .......++..++.... ..........++..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~-~~l--a~~g~-~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~ 102 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI-VLM--AQIGC-FVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAA 102 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH-HHH--HHhCC-CcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHH
Confidence 4679999999999999999886531 111 11111 2222110 00112222333322211 11223334444555
Q ss_pred HhcccCCCcEEEEEeCCCC---CchH------HHhhhhccCCCceEEEecccc
Q 003950 234 LLKPIRPEAILLVLDDVWS---GSES------LLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 234 ~~~~l~~kr~LlVlDdv~~---~~~~------~~~~~~~~~~gs~iivTtR~~ 277 (784)
.++.+ .++-|+++|.... ..+. ++..+.. ..|+.+|+||-..
T Consensus 103 il~~~-~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~ 153 (222)
T cd03285 103 ILKSA-TENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFH 153 (222)
T ss_pred HHHhC-CCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechH
Confidence 55433 5688999999933 2221 2233322 3478899988753
No 405
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.44 E-value=0.3 Score=45.56 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
....+.++|++|.||||+.+.+|..
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3568999999999999999999974
No 406
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.43 E-value=0.12 Score=55.91 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=47.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc-----CCC-CCCCCChH-----H
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK-----GYA-VPEFQTDE-----D 226 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~-~~~~~~~~-----~ 226 (784)
-..++|+|..|+|||||++.+.... .. +.++++..-....+..++....+... ..- ..+.+... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~p-d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AF-DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CC-CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999999887622 11 22243443223344444444333322 110 01111111 1
Q ss_pred HHHHHHHHhcccCCCcEEEEEeCCC
Q 003950 227 AINDLERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 227 ~~~~l~~~~~~l~~kr~LlVlDdv~ 251 (784)
..-.+.+.+.. +++.+|+++||+-
T Consensus 241 ~a~~iAEyfrd-~G~~Vll~~DslT 264 (450)
T PRK06002 241 TATAIAEYFRD-RGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHH-cCCCEEEeccchH
Confidence 11233344421 5999999999984
No 407
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.43 E-value=0.37 Score=47.67 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|..|.|||||++.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999875
No 408
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.42 E-value=0.056 Score=49.68 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=29.8
Q ss_pred chhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 144 VPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 144 ~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
+.+++|.++|.. +++.++|.+|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 457788887764 79999999999999999999874
No 409
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.23 Score=55.37 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=36.6
Q ss_pred CCCCCCCCCCchhHHHHHH---HHhCC---------cEEEEEEcCCCCcHHHHHHHHhccc
Q 003950 134 DPPPVTPGLDVPLQELKLE---LFKDG---------RQVIVVSAPGGYGKTTLVKKLCKDD 182 (784)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~---L~~~~---------~~vv~I~G~~GiGKTtLa~~v~~~~ 182 (784)
....++.|.++.++++.+. |.+.. ++-|..+|++|.|||.||++++...
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 4446678999877665554 44221 5679999999999999999999844
No 410
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.42 E-value=0.056 Score=48.02 Aligned_cols=38 Identities=29% Similarity=0.356 Sum_probs=28.7
Q ss_pred chhHHHHHHHHh--CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 144 VPLQELKLELFK--DGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 144 ~~~~~l~~~L~~--~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
++..++.+.|.. ....+|.+.|.-|.||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344555555552 24569999999999999999999874
No 411
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.41 E-value=0.049 Score=54.24 Aligned_cols=49 Identities=24% Similarity=0.525 Sum_probs=31.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
..++.|.|.+|+|||++|.++.. .-...+...++|++..++ ..++.+.+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~--~~~~~~ge~vlyvs~ee~--~~~l~~~~ 67 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLY--NGLKNFGEKVLYVSFEEP--PEELIENM 67 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHHHT--EEEEESSS---HHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHH--HhhhhcCCcEEEEEecCC--HHHHHHHH
Confidence 57999999999999999988764 222222334778887554 34444443
No 412
>PRK05439 pantothenate kinase; Provisional
Probab=94.41 E-value=0.24 Score=51.11 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998876
No 413
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.40 E-value=0.026 Score=53.69 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 414
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.38 E-value=0.12 Score=55.88 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=54.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC-CHHHHHHHHHHHcCCC-------CCCCCChHH--
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA-------VPEFQTDED-- 226 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 226 (784)
.-+.++|.|.+|+|||||+..+... ........++++-+++.. ...++++.+...-... ..+.+....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~--~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHH--HHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3578999999999999999998763 322223336677776654 5567777665431111 011111111
Q ss_pred ---HHHHHHHHhcccCCCcEEEEEeCCCC
Q 003950 227 ---AINDLERLLKPIRPEAILLVLDDVWS 252 (784)
Q Consensus 227 ---~~~~l~~~~~~l~~kr~LlVlDdv~~ 252 (784)
..-.+.+.+..-+++.+||++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 11223333322257999999999843
No 415
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.38 E-value=0.032 Score=53.24 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+++|+|++|+||||+++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 416
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.36 E-value=0.22 Score=50.57 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ 199 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~ 199 (784)
.+++.|.|.+|+|||++|.++... ..+. ...+++++..+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~-~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVT-QASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH-HHhC--CCcEEEEEecC
Confidence 579999999999999999987652 2222 33467888864
No 417
>PRK14528 adenylate kinase; Provisional
Probab=94.35 E-value=0.081 Score=50.72 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 418
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.35 E-value=0.13 Score=51.41 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=64.8
Q ss_pred CCCCCCchhHHHHHHHH-------hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHH
Q 003950 138 VTPGLDVPLQELKLELF-------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
.++|-.-..+.|+..+. ..++=+++.+|.+|+||.-+|+.++++- |..+. ........
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~-----~~~Gl----------~S~~V~~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL-----YRGGL----------RSPFVHHF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH-----Hhccc----------cchhHHHh
Confidence 45677767777777776 2346799999999999999999988742 21110 00011112
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHh-cc-cCCCcEEEEEeCCCCCchHHHhhhhcc
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLL-KP-IRPEAILLVLDDVWSGSESLLQKFKFQ 264 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~-~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~ 264 (784)
..... .|.....++...+|+..+ .. -.-+|-|+|||+|+.....+++.+.+.
T Consensus 148 vat~h--FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpf 201 (344)
T KOG2170|consen 148 VATLH--FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPF 201 (344)
T ss_pred hhhcc--CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhh
Confidence 22211 122223344444454444 11 156899999999987776666665543
No 419
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.33 E-value=0.062 Score=52.94 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=35.9
Q ss_pred hhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCCceEEEEeCCCCCHHHHH
Q 003950 145 PLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 145 ~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~ 207 (784)
+..++++.+. ..+..+|+|.|+||+|||||..++.. .... .....++-|+-|..++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~--~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR--ELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH--HHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH--HHhhcCCceEEEEECCCCCCCCCccc
Confidence 3455666665 34678999999999999999998876 3332 233445555556665544433
No 420
>PRK14532 adenylate kinase; Provisional
Probab=94.32 E-value=0.16 Score=48.80 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003950 161 IVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 161 v~I~G~~GiGKTtLa~~v~~ 180 (784)
|.|.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999986
No 421
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.15 Score=53.33 Aligned_cols=86 Identities=17% Similarity=0.344 Sum_probs=52.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCC-hHHHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQT-DEDAINDLERLLK 236 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~~~ 236 (784)
-.+|.|-|-+|||||||..++.. ++...- ++++|+-.++ ..+ .+--++.++.......- .+...+.+.+.++
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~--~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAA--RLAKRG--KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHH--HHHhcC--cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 47999999999999999999988 555444 4666665443 332 23334555543322111 1222233333332
Q ss_pred ccCCCcEEEEEeCCCC
Q 003950 237 PIRPEAILLVLDDVWS 252 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~ 252 (784)
+.++-++|+|.+..
T Consensus 166 --~~~p~lvVIDSIQT 179 (456)
T COG1066 166 --QEKPDLVVIDSIQT 179 (456)
T ss_pred --hcCCCEEEEeccce
Confidence 47888999999843
No 422
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.31 E-value=0.034 Score=49.17 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=27.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP 201 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~ 201 (784)
.+-|.|.|.+|+||||+|.+++. .+.. -|+++|+-.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae------~~~~--~~i~isd~v 42 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE------KTGL--EYIEISDLV 42 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH------HhCC--ceEehhhHH
Confidence 35688999999999999999885 2333 277776543
No 423
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.29 E-value=0.17 Score=53.78 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=56.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK 236 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 236 (784)
....|.|.|+.|.||||+++.+.. .+......++ + .+.+.... ........+...... .......+.++..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i-~-tiEdp~E~--~~~~~~~~i~q~evg-~~~~~~~~~l~~~l- 192 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMID--YINKNAAGHI-I-TIEDPIEY--VHRNKRSLINQREVG-LDTLSFANALRAAL- 192 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEE-E-EEcCChhh--hccCccceEEccccC-CCCcCHHHHHHHhh-
Confidence 357899999999999999999887 4444444433 2 23222111 000000000000000 01122333444444
Q ss_pred ccCCCcEEEEEeCCCCCchHHHhhhhccCCCceEEEecc
Q 003950 237 PIRPEAILLVLDDVWSGSESLLQKFKFQLPYYKILVTSR 275 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~iivTtR 275 (784)
+..+=.|++|.+.+.+. ....+.....|-.|+.|+-
T Consensus 193 --r~~pd~i~vgEird~~~-~~~~l~aa~tGh~v~~T~H 228 (343)
T TIGR01420 193 --REDPDVILIGEMRDLET-VELALTAAETGHLVFGTLH 228 (343)
T ss_pred --ccCCCEEEEeCCCCHHH-HHHHHHHHHcCCcEEEEEc
Confidence 67888999999975432 2333445556666555554
No 424
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.27 E-value=0.1 Score=48.95 Aligned_cols=83 Identities=18% Similarity=0.299 Sum_probs=43.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccC
Q 003950 160 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIR 239 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 239 (784)
++.|.|.+|+||||+|..+... +...++++..... ...+..+.|..............+. ...+...++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~------~~~~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~-~~~l~~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ------SGLQVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEE-PLDLAELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH------cCCCcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecc-cccHHHHHHhhc
Confidence 6899999999999999998762 2222334444433 3345556665543322222111111 112333332211
Q ss_pred CCcEEEEEeCC
Q 003950 240 PEAILLVLDDV 250 (784)
Q Consensus 240 ~kr~LlVlDdv 250 (784)
.+.-++|+|.+
T Consensus 75 ~~~~~VlID~L 85 (170)
T PRK05800 75 APGRCVLVDCL 85 (170)
T ss_pred CCCCEEEehhH
Confidence 22337888986
No 425
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.27 E-value=0.41 Score=53.63 Aligned_cols=45 Identities=11% Similarity=0.241 Sum_probs=38.3
Q ss_pred CCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 137 PVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
..++|....+.++.+.+. .....-|.|.|..|+||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 348999999999888886 445578999999999999999999863
No 426
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.25 E-value=0.12 Score=55.52 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=51.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC-CHHHHHHHHHHHcCCC-------CCCCCChH----
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA-------VPEFQTDE---- 225 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 225 (784)
...++|+|..|+|||||++.+... .. .+. ++.+-+++.. ...++.+.++..-+.. ..+.+...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~~--~dv-~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--TT--ADV-IVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--CC--CCE-EEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 468999999999999999999862 11 233 3345666654 3455666554431110 00111111
Q ss_pred -HHHHHHHHHhcccCCCcEEEEEeCCC
Q 003950 226 -DAINDLERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 226 -~~~~~l~~~~~~l~~kr~LlVlDdv~ 251 (784)
...-.+.+.+.. +++.+|+++||+-
T Consensus 237 ~~~A~tiAEyfrd-~G~~VLl~~DslT 262 (444)
T PRK08972 237 CETATTIAEYFRD-QGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHH-cCCCEEEEEcChH
Confidence 111223444422 6999999999984
No 427
>PHA02774 E1; Provisional
Probab=94.24 E-value=0.14 Score=56.48 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=26.7
Q ss_pred hHHHHHHHHhC-CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 146 LQELKLELFKD-GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 146 ~~~l~~~L~~~-~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+..+..+|... +..-+.|+|++|.|||.+|..+.+
T Consensus 421 l~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 421 LTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 246899999999999999999987
No 428
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.24 E-value=0.075 Score=52.15 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003950 161 IVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 161 v~I~G~~GiGKTtLa~~v~~ 180 (784)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999876
No 429
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.22 E-value=0.077 Score=46.20 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=34.2
Q ss_pred CCCCCCchhHHHHHHHH-------hCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 138 VTPGLDVPLQELKLELF-------KDGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
.++|-+-..+.+++.+. .+.+-|++.+|.+|+|||.+|+.++++
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46777777777777665 234679999999999999988887763
No 430
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.22 E-value=0.42 Score=48.19 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|..|.|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 431
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.21 E-value=0.13 Score=54.94 Aligned_cols=86 Identities=16% Similarity=0.318 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCC-ChHHHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQ-TDEDAINDLERLLK 236 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~~~ 236 (784)
..++.|.|.+|+|||||+.+++. ..... ...++|++..+. ..++. .-++.++....... ..+...+.+.+.++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~--~~a~~-g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAA--RLAKR-GGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH--HHHhc-CCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 47999999999999999999886 33322 234778776443 33332 22344543221110 00111222333332
Q ss_pred ccCCCcEEEEEeCCC
Q 003950 237 PIRPEAILLVLDDVW 251 (784)
Q Consensus 237 ~l~~kr~LlVlDdv~ 251 (784)
..+.-+||+|.+.
T Consensus 156 --~~~~~lVVIDSIq 168 (372)
T cd01121 156 --ELKPDLVIIDSIQ 168 (372)
T ss_pred --hcCCcEEEEcchH
Confidence 3456688888873
No 432
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.19 E-value=0.1 Score=57.28 Aligned_cols=99 Identities=14% Similarity=0.186 Sum_probs=51.8
Q ss_pred HHHHHH-hCCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCCceEEEEeCCCC-CHHHHHHHHHHHcCCCCCCCCCh-
Q 003950 149 LKLELF-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYAVPEFQTD- 224 (784)
Q Consensus 149 l~~~L~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~- 224 (784)
+++.|. -..-+..+|+|.+|+|||||++.+.+ .+.. +-++.++.+-|.+.. .+.++.+.+-..+-....+.+..
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~ 483 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSD 483 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHH
Confidence 444444 23356789999999999999999998 4433 223334455555543 23333333211111111111111
Q ss_pred H----HHHHHHHHHh-cccCCCcEEEEEeCCC
Q 003950 225 E----DAINDLERLL-KPIRPEAILLVLDDVW 251 (784)
Q Consensus 225 ~----~~~~~l~~~~-~~l~~kr~LlVlDdv~ 251 (784)
. ...-.+.+.+ + .++.+||++|++-
T Consensus 484 ~~~~a~~ai~~Ae~fre--~G~dVlillDSlT 513 (672)
T PRK12678 484 HTTVAELAIERAKRLVE--LGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCEEEEEeCch
Confidence 1 1111122222 2 7999999999983
No 433
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.18 E-value=0.044 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.381 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|+|++|+||||+|+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999987
No 434
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.16 E-value=0.038 Score=50.55 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 003950 160 VIVVSAPGGYGKTTLVKKLC 179 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~ 179 (784)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999876
No 435
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.16 E-value=0.23 Score=57.45 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=31.9
Q ss_pred HHHHHHHHhcccCCCcEEEEEeCCCCCc----hH-HHhhhhccCC-CceEEEeccccc
Q 003950 227 AINDLERLLKPIRPEAILLVLDDVWSGS----ES-LLQKFKFQLP-YYKILVTSRSVF 278 (784)
Q Consensus 227 ~~~~l~~~~~~l~~kr~LlVlDdv~~~~----~~-~~~~~~~~~~-gs~iivTtR~~~ 278 (784)
++.+.-.+.+.+-.++-+++||..-+.- +. +.+.+..... .+.|+||-|...
T Consensus 613 GQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~t 670 (709)
T COG2274 613 GQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLST 670 (709)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchH
Confidence 3333333335667899999999974432 22 4555554444 577888888764
No 436
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.13 E-value=0.04 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...|.|+|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 437
>PF13245 AAA_19: Part of AAA domain
Probab=94.12 E-value=0.1 Score=41.45 Aligned_cols=24 Identities=38% Similarity=0.685 Sum_probs=18.1
Q ss_pred CcEEEEEEcCCCCcHHHHH-HHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLV-KKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa-~~v~~ 180 (784)
+.+++.|.|.+|.|||+++ ..+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678889999999999554 44444
No 438
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.12 E-value=0.63 Score=45.50 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|.|..|.|||||++.+..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999875
No 439
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=0.26 Score=47.28 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=60.7
Q ss_pred HHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccc-ccc-CCceEEEEeCCCCCH---HHHHHHHHHHcCCCCCCCCC
Q 003950 149 LKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKF-KDNIFFVTVSQTPNV---KGIVQKVYQHKGYAVPEFQT 223 (784)
Q Consensus 149 l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f-~~~~~wv~~~~~~~~---~~~~~~i~~~l~~~~~~~~~ 223 (784)
++..|.+.+..-..|.|++|+|||||.+.++.-.... +.| +.++.-++-+..... ---+..+...+....+. +.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~c-pk 206 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPC-PK 206 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccc-hH
Confidence 6666777777778999999999999999887621111 134 333333332221100 00001111111111111 01
Q ss_pred hHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhhccCCCceEEEecc
Q 003950 224 DEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQLPYYKILVTSR 275 (784)
Q Consensus 224 ~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~iivTtR 275 (784)
.+.....++ .--+=++|+|.+-..++. ...+-....|.++|.|..
T Consensus 207 ~~gmmmaIr------sm~PEViIvDEIGt~~d~-~A~~ta~~~GVkli~TaH 251 (308)
T COG3854 207 AEGMMMAIR------SMSPEVIIVDEIGTEEDA-LAILTALHAGVKLITTAH 251 (308)
T ss_pred HHHHHHHHH------hcCCcEEEEeccccHHHH-HHHHHHHhcCcEEEEeec
Confidence 111222222 344668999999776553 333344556778877764
No 440
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.12 E-value=0.06 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|.+|.|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999985
No 441
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.11 E-value=0.92 Score=49.32 Aligned_cols=37 Identities=35% Similarity=0.527 Sum_probs=30.7
Q ss_pred chhHHHHHHHH-----h--CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 144 VPLQELKLELF-----K--DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 144 ~~~~~l~~~L~-----~--~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-++++..||. . -+.+|+.|.|++|+||||..+.+..
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence 34778888887 2 3467999999999999999998876
No 442
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.11 E-value=0.072 Score=51.94 Aligned_cols=87 Identities=14% Similarity=0.271 Sum_probs=51.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC-CCHHHHHHHHHHH--cC-----CCCCCCCChHH---
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQKVYQH--KG-----YAVPEFQTDED--- 226 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~~~--l~-----~~~~~~~~~~~--- 226 (784)
-+.++|.|.+|+|||+|+..+.++. . -+. ++++-+++. ....++.+.+... +. ....+.+....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~--~--~d~-~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ--D--ADV-VVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC--T--TTE-EEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc--c--ccc-eeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 3679999999999999999998743 1 112 357777765 3556666666443 10 00011111111
Q ss_pred --HHHHHHHHhcccCCCcEEEEEeCC
Q 003950 227 --AINDLERLLKPIRPEAILLVLDDV 250 (784)
Q Consensus 227 --~~~~l~~~~~~l~~kr~LlVlDdv 250 (784)
..-.+.+.+.. +++.+|+++||+
T Consensus 90 ~~~a~t~AEyfrd-~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRD-QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHH-TTSEEEEEEETH
T ss_pred hccchhhhHHHhh-cCCceeehhhhh
Confidence 11223344433 799999999998
No 443
>PRK13947 shikimate kinase; Provisional
Probab=94.09 E-value=0.036 Score=52.37 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 444
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.09 E-value=0.042 Score=52.67 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
++.|.|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999873
No 445
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.08 E-value=0.035 Score=49.98 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCC
Q 003950 160 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYA 217 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 217 (784)
+|.|.|++|.||||+|+.+.++ +... .++ .-.++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~------~gl~--~vs------aG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH------LGLK--LVS------AGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH------hCCc--eee------ccHHHHHHHHHcCCC
Confidence 6899999999999999999873 3221 222 235677888777653
No 446
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.07 E-value=0.039 Score=52.41 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 447
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.06 E-value=0.084 Score=52.02 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|.|+|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998876
No 448
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.03 E-value=0.73 Score=53.75 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=36.0
Q ss_pred CCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.++|....+.++.+.+. .....-|.|+|..|+||+++|+.+.+
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~ 370 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHN 370 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHH
Confidence 457899988888888776 23334588999999999999999987
No 449
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.03 E-value=0.036 Score=52.77 Aligned_cols=21 Identities=48% Similarity=0.774 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 450
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.03 E-value=0.036 Score=51.11 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
++.|.|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999999987
No 451
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.01 E-value=0.32 Score=48.89 Aligned_cols=52 Identities=15% Similarity=0.379 Sum_probs=36.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
..++.|.|.+|+|||++|.++..+ ........++|++... +..++...++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~--~~~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAEN--IAKKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 468999999999999999988763 2222233466877654 566677766543
No 452
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.01 E-value=0.16 Score=45.12 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=44.4
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCc-hhccCCCCCCEEEeecCCCCCCCcccccCCCCCCE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALP-EGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNF 697 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 697 (784)
.+++|+.+.+.. .....-...+.++.+|+.+.+.++ ...++ ..+.++++|+.+.+.. .....-...+..+++|+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 445566666553 122222334566666777776652 33333 3455555677777743 222222234455667777
Q ss_pred EeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcC-hhhhCCCCC
Q 003950 698 LDISECLNIQELPERIGELCSLKTLCLKGCSMFELP-SSILNLENL 742 (784)
Q Consensus 698 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L 742 (784)
+.+..+ ....-...+.++ +|+.+.+.. .++.++ ..+.++++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 776543 222222334554 666666654 334443 234555554
No 453
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.00 E-value=0.13 Score=48.11 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQ 208 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 208 (784)
...|.|-|++|+|||||..+.+. ..++.|...++-.++-...+.+.+.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~--~L~~~~~~aVI~~Di~t~~Da~~l~~ 61 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLR--ALKDEYKIAVITGDIYTKEDADRLRK 61 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHH--HHHhhCCeEEEeceeechhhHHHHHh
Confidence 37899999999999999999998 77777887665555544455555444
No 454
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.99 E-value=0.042 Score=52.43 Aligned_cols=22 Identities=55% Similarity=0.827 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
++|+|+|+.|+||||||+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999987
No 455
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.98 E-value=0.23 Score=54.42 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=46.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccC-CceEEEEeCC-CCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFK-DNIFFVTVSQ-TPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 235 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 235 (784)
.+|++++|+.|+||||++..++.. ...... .++..++... .....+-++...+.++..........+... .+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~--~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~----aL 329 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR--CVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRL----AL 329 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH--HHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHH----HH
Confidence 479999999999999999998862 222221 1344554422 123334445555555544322222222211 12
Q ss_pred cccCCCcEEEEEeCCC
Q 003950 236 KPIRPEAILLVLDDVW 251 (784)
Q Consensus 236 ~~l~~kr~LlVlDdv~ 251 (784)
..+.++ -.+++|-..
T Consensus 330 ~~L~d~-d~VLIDTaG 344 (484)
T PRK06995 330 SELRNK-HIVLIDTIG 344 (484)
T ss_pred HhccCC-CeEEeCCCC
Confidence 233444 466777764
No 456
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.98 E-value=0.16 Score=58.65 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=57.9
Q ss_pred HHHHHHHHhCC---cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC----
Q 003950 147 QELKLELFKDG---RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP---- 219 (784)
Q Consensus 147 ~~l~~~L~~~~---~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---- 219 (784)
..|-.+|-.++ .+++-|+|.+|+||||||.+++.. .... ...++|++..+.+++. .+++++....
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~-G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv 117 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAA-GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLV 117 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEECCccchhHH-----HHHHcCCChhHeEE
Confidence 34444443233 588999999999999999876652 2222 3447799987777643 5566655321
Q ss_pred -CCCChHHHHHHHHHHhcccCCCcEEEEEeCCC
Q 003950 220 -EFQTDEDAINDLERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 220 -~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~ 251 (784)
.....+.....+..+++ .++.-|||+|.+-
T Consensus 118 ~~~~~~E~~l~~i~~lv~--~~~~~LVVIDSI~ 148 (790)
T PRK09519 118 SQPDTGEQALEIADMLIR--SGALDIVVIDSVA 148 (790)
T ss_pred ecCCCHHHHHHHHHHHhh--cCCCeEEEEcchh
Confidence 11223344444444332 4567899999974
No 457
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.97 E-value=0.38 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....++|+|+.|.|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999864
No 458
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.93 E-value=0.11 Score=56.12 Aligned_cols=94 Identities=10% Similarity=0.116 Sum_probs=54.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC-CHHHHHHHHHHHcCCC-------CCCCCChH---
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA-------VPEFQTDE--- 225 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 225 (784)
.-+.++|.|.+|+|||+|+..+..... +.+-+. ++++-+++.. ...++.+.+...-... ..+.+...
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v-~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGV-SIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCE-EEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 356899999999999999999877422 222344 6678787654 4566666665431110 01111111
Q ss_pred --HHHHHHHHHhcccCCCcEEEEEeCCCC
Q 003950 226 --DAINDLERLLKPIRPEAILLVLDDVWS 252 (784)
Q Consensus 226 --~~~~~l~~~~~~l~~kr~LlVlDdv~~ 252 (784)
...-.+.+.+..-+++.+|+++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 111223333321257999999999843
No 459
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.93 E-value=0.36 Score=45.04 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCC---CCCHHHHHHHHHH---HcCCCCC-CCCChHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ---TPNVKGIVQKVYQ---HKGYAVP-EFQTDEDAIND 230 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~---~~~~~~~~~~i~~---~l~~~~~-~~~~~~~~~~~ 230 (784)
...|-|++-.|.||||.|..+.-. .....+. ++.+..-. .......+..+.- +.+.... ...+.......
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~--v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKK--VGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCe--EEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 357888888999999999877652 2222333 33343322 2233334433200 0111100 00111111122
Q ss_pred HHHHh----ccc-CCCcEEEEEeCCCC-------CchHHHhhhhccCCCceEEEecccc
Q 003950 231 LERLL----KPI-RPEAILLVLDDVWS-------GSESLLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 231 l~~~~----~~l-~~kr~LlVlDdv~~-------~~~~~~~~~~~~~~gs~iivTtR~~ 277 (784)
.++.+ +.+ .++-=|||||.+-. ..+.+.+.+....++..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22222 333 34556999999831 2234556565555677999999986
No 460
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.91 E-value=0.043 Score=49.56 Aligned_cols=21 Identities=52% Similarity=0.895 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|+|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 461
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.91 E-value=0.18 Score=51.58 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=49.2
Q ss_pred CCCCCCCCCchhH---HHHHHHHhC--CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCC-----HH
Q 003950 135 PPPVTPGLDVPLQ---ELKLELFKD--GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN-----VK 204 (784)
Q Consensus 135 ~~~~~vGr~~~~~---~l~~~L~~~--~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~-----~~ 204 (784)
....+||..+..+ -+++++.+. .-+.|.|+|++|.|||+||-.+.+ .....-|. + -++.|+-++ .+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~--eLG~dvPF-~-~isgsEiYS~E~kKTE 112 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAR--ELGEDVPF-V-AISGSEIYSLEVKKTE 112 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHH--HhCCCCCc-e-eeccceeeeecccHHH
Confidence 3467899877655 355666644 368999999999999999999998 44443332 1 223333332 33
Q ss_pred HHHHHHHHHcCC
Q 003950 205 GIVQKVYQHKGY 216 (784)
Q Consensus 205 ~~~~~i~~~l~~ 216 (784)
.+.+.+-++++.
T Consensus 113 ~L~qa~RraIGv 124 (450)
T COG1224 113 ALTQALRRAIGV 124 (450)
T ss_pred HHHHHHHHhhce
Confidence 444555555553
No 462
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.90 E-value=0.048 Score=57.04 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=36.9
Q ss_pred CCCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 135 PPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+-..++|.+..++.+.-.+...+..-+.+.|.+|+||||+|+.+..
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999888777655545556699999999999999999865
No 463
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.89 E-value=0.051 Score=50.76 Aligned_cols=24 Identities=42% Similarity=0.481 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999987
No 464
>PRK14529 adenylate kinase; Provisional
Probab=93.87 E-value=0.17 Score=49.56 Aligned_cols=86 Identities=17% Similarity=0.160 Sum_probs=43.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcccccccccCCc-eEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccC
Q 003950 161 IVVSAPGGYGKTTLVKKLCKDDQVLGKFKDN-IFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIR 239 (784)
Q Consensus 161 v~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 239 (784)
|.|.|++|+||||+|+.+.....+ .+...+ ++.-.+..........+.++.+-. ...++-....+...+....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~G~-----lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL-AHIESGAIFREHIGGGTELGKKAKEYIDRGD-----LVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-CCcccchhhhhhccCCChHHHHHHHHHhccC-----cchHHHHHHHHHHHHhccC
Confidence 788999999999999988863221 112111 111122222223333444443311 1123334444555553222
Q ss_pred CCcEEEEEeCCCCCc
Q 003950 240 PEAILLVLDDVWSGS 254 (784)
Q Consensus 240 ~kr~LlVlDdv~~~~ 254 (784)
.-=+|||+.-...
T Consensus 77 --~~g~iLDGfPRt~ 89 (223)
T PRK14529 77 --KNGWLLDGFPRNK 89 (223)
T ss_pred --CCcEEEeCCCCCH
Confidence 3458999986554
No 465
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.85 E-value=0.074 Score=50.59 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=27.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEE
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVT 196 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~ 196 (784)
...|++|+|++|.|||||.+.+-. . ...+.+.+|++
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~---L-E~~~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG---L-EEPDSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC---C-cCCCCceEEEC
Confidence 356999999999999999998865 2 23445566775
No 466
>PLN02348 phosphoribulokinase
Probab=93.82 E-value=0.09 Score=55.50 Aligned_cols=25 Identities=40% Similarity=0.683 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+...+|+|.|.+|.||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 467
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.81 E-value=0.051 Score=49.18 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccc-cccCCceEEEEeCC
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQ 199 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~wv~~~~ 199 (784)
++|.|+|..|+|||||++.+.+ ... ..+.. ++..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v-~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRV-AVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--E-EEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCce-EEEEEccC
Confidence 4899999999999999999998 443 34444 33555543
No 468
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.81 E-value=0.29 Score=54.00 Aligned_cols=124 Identities=23% Similarity=0.277 Sum_probs=69.7
Q ss_pred hHHHHHHHHhCCcEEEEEEcCCCCcHHH-HHHHHhcccccccccCCceEEEEeCCCC--CHHHHHHHHHHHcCCCCCCC-
Q 003950 146 LQELKLELFKDGRQVIVVSAPGGYGKTT-LVKKLCKDDQVLGKFKDNIFFVTVSQTP--NVKGIVQKVYQHKGYAVPEF- 221 (784)
Q Consensus 146 ~~~l~~~L~~~~~~vv~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~- 221 (784)
.++|++.+. ..+||.|+|..|.|||| ||+.+|.+ .|...- -+-+.++. ....+.+.+.+.++....+.
T Consensus 361 R~~ll~~ir--~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V 432 (1042)
T KOG0924|consen 361 RDQLLSVIR--ENQVVVIVGETGSGKTTQLAQYLYED-----GYADNG-MIGCTQPRRVAAISVAKRVAEEMGVTLGDTV 432 (1042)
T ss_pred HHHHHHHHh--hCcEEEEEecCCCCchhhhHHHHHhc-----ccccCC-eeeecCchHHHHHHHHHHHHHHhCCcccccc
Confidence 344444444 35799999999999986 66777763 232211 33444443 34456667777765432110
Q ss_pred ---------CCh------HHHHHHHHHHh-cccCCCcEEEEEeCCCCCc---hH---HHhhhhccCCCceEEEecccc
Q 003950 222 ---------QTD------EDAINDLERLL-KPIRPEAILLVLDDVWSGS---ES---LLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 222 ---------~~~------~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~---~~---~~~~~~~~~~gs~iivTtR~~ 277 (784)
.+. ....-.|++.+ ...-.|--.||+|.+++.. +- ++.........-|+||||-..
T Consensus 433 GYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm 510 (1042)
T KOG0924|consen 433 GYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATM 510 (1042)
T ss_pred ceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccc
Confidence 000 11122455555 4444667789999997654 21 233333344578999998754
No 469
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.79 E-value=0.24 Score=55.85 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=36.1
Q ss_pred CCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|....+.++.+.+. .....-|.|+|..|+||+++|+++..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 468999998888887776 33345688999999999999999875
No 470
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.77 E-value=0.1 Score=54.18 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=34.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 209 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 209 (784)
.+++.+.|.||+||||+|.+..- ....... +++-++.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~-kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGK-KVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCC-cEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988654 3333443 3667777666566555443
No 471
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.32 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.654 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|..|.|||||++.+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 37999999999999999999986
No 472
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.77 E-value=0.063 Score=53.60 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccc-----cccccCCceEEEEeCCCCCHHHHHHHHHH
Q 003950 160 VIVVSAPGGYGKTTLVKKLCKDDQ-----VLGKFKDNIFFVTVSQTPNVKGIVQKVYQ 212 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~~~~-----~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 212 (784)
+..|+|++|.||||++..+..... ....-...+ .+..........++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~i-l~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKI-LVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-E-EEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccc-eeecCCchhHHHHHHHHHh
Confidence 789999999999977766655210 012333434 4444444445555555443
No 473
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.75 E-value=0.1 Score=59.41 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=54.2
Q ss_pred CCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-..++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+ .+.. +++. ++|..- ...+...+++.+...+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~-~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQD-ILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHH--HcChHhHHH-heEeeC-CCcchHHHHHHHHHhc
Confidence 356789988888887766644 4799999999999999999987 3332 3344 667544 3446777888887766
Q ss_pred CC
Q 003950 215 GY 216 (784)
Q Consensus 215 ~~ 216 (784)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 53
No 474
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.74 E-value=0.043 Score=50.28 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|.|.|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 475
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.74 E-value=0.06 Score=45.66 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHh
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLC 179 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~ 179 (784)
-..++|.|++|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 476
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.4 Score=46.69 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
.-.+++|+|..|.|||||++.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 3479999999999999999998763
No 477
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.71 E-value=0.069 Score=52.27 Aligned_cols=29 Identities=41% Similarity=0.500 Sum_probs=25.5
Q ss_pred HHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 152 ELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 152 ~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+...++++|+++|..|+|||||..++.+
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34466899999999999999999999887
No 478
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.69 E-value=0.12 Score=47.51 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=25.0
Q ss_pred HHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 152 ELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 152 ~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+......+|-+.|.+|.||||+|.+++.
T Consensus 17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 17 ALKGQKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred HHhCCCCeEEEeecCCCCCHHHHHHHHHH
Confidence 34455678999999999999999999997
No 479
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.65 E-value=0.29 Score=47.27 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|.|..|.|||||.+.+..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999986
No 480
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.64 E-value=0.34 Score=52.28 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+++++|..|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988765
No 481
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.64 E-value=0.19 Score=52.49 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=27.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEe
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 197 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~ 197 (784)
+..+++++|++|+||||++..++. ..+.. ..++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~--~l~~~-g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH--KYKAQ-GKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhc-CCeEEEEec
Confidence 468999999999999999999887 33322 233545543
No 482
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.64 E-value=0.2 Score=54.14 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=50.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC-CHHHHHHHHHHHcCCC-------CCCCCChH----
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA-------VPEFQTDE---- 225 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 225 (784)
...++|+|..|+|||||++.+++... -+. ++.+-+++.. ...++....+..-+.. ..+.+...
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~-~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADV-SVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCE-EEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 56899999999999999999987321 123 3356666544 3445554444331110 00111111
Q ss_pred -HHHHHHHHHhcccCCCcEEEEEeCCCC
Q 003950 226 -DAINDLERLLKPIRPEAILLVLDDVWS 252 (784)
Q Consensus 226 -~~~~~l~~~~~~l~~kr~LlVlDdv~~ 252 (784)
...-.+.+.+.. +++.+|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd-~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRD-QGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHH-CCCcEEEEEeCcHH
Confidence 111223344421 69999999999843
No 483
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.64 E-value=0.14 Score=58.48 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=48.4
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-cCCceEEEEeC-CCCCHHHHHHHHHHHc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK-FKDNIFFVTVS-QTPNVKGIVQKVYQHK 214 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~~wv~~~-~~~~~~~~~~~i~~~l 214 (784)
..++|.++.++.+...+... +-+.++|++|+||||+|+.+.+ .+... |.. ++.+. ...+..++++.+...+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~--~l~~~~~~~---~~~~~n~~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAE--LLPDEELED---ILVYPNPEDPNMPRIVEVPAGE 90 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHH--HcCchhhee---EEEEeCCCCCchHHHHHHHHhh
Confidence 56789888887777666644 3556999999999999999997 44333 332 22232 2335556677777666
Q ss_pred C
Q 003950 215 G 215 (784)
Q Consensus 215 ~ 215 (784)
+
T Consensus 91 g 91 (608)
T TIGR00764 91 G 91 (608)
T ss_pred c
Confidence 5
No 484
>PRK13949 shikimate kinase; Provisional
Probab=93.62 E-value=0.052 Score=51.04 Aligned_cols=21 Identities=43% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-|.|+|++|.||||+++.+++
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 485
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.61 E-value=0.09 Score=53.58 Aligned_cols=51 Identities=14% Similarity=0.324 Sum_probs=37.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQ 212 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 212 (784)
..+++.|+|.+|+|||++|.++.. +...+... ++||+..+. ..++.+.+.+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~-vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLY--EGAREGEP-VLYVSTEES--PEELLENARS 72 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCc-EEEEEecCC--HHHHHHHHHH
Confidence 468999999999999999999887 45555444 779988654 4454444443
No 486
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.61 E-value=0.33 Score=50.52 Aligned_cols=89 Identities=16% Similarity=0.272 Sum_probs=49.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCC-CCCHHHHHHHHHHHcCCC-------CCCCCChH----
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ-TPNVKGIVQKVYQHKGYA-------VPEFQTDE---- 225 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 225 (784)
...++|+|..|.|||||++.+... ... +.++ ..-+++ ..+..++.......-+.. ..+.+...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~v-i~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARG--TTA--DVNV-IALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCC--CEEE-EEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 467899999999999999998873 221 2223 344443 345556555555432211 01111111
Q ss_pred -HHHHHHHHHhcccCCCcEEEEEeCCCC
Q 003950 226 -DAINDLERLLKPIRPEAILLVLDDVWS 252 (784)
Q Consensus 226 -~~~~~l~~~~~~l~~kr~LlVlDdv~~ 252 (784)
...-.+.+.+.. ++|.+||++||+-.
T Consensus 144 ~~~a~~~AEyfr~-~g~~Vll~~Dsltr 170 (326)
T cd01136 144 AYTATAIAEYFRD-QGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHH-cCCCeEEEeccchH
Confidence 111223334421 69999999999843
No 487
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.58 E-value=0.26 Score=56.16 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=57.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccC--CceEEEEeCCCCCHHHHHHHHHHHcCCCC-CCC--CChHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFK--DNIFFVTVSQTPNVKGIVQKVYQHKGYAV-PEF--QTDEDAINDLE 232 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~--~~~~~~~~~l~ 232 (784)
.++..|.|.+|.||||++..+.. .+..... ...+.+..........+.+.+...+..-. .+. .........+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~--~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiH 244 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLA--ALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLH 244 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH--HHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHH
Confidence 57999999999999999988876 3322111 11234444444344444444433221100 000 00001123444
Q ss_pred HHhccc-C--------CCc---EEEEEeCCCCCchHHHhhhh-ccCCCceEEEec
Q 003950 233 RLLKPI-R--------PEA---ILLVLDDVWSGSESLLQKFK-FQLPYYKILVTS 274 (784)
Q Consensus 233 ~~~~~l-~--------~kr---~LlVlDdv~~~~~~~~~~~~-~~~~gs~iivTt 274 (784)
+++... . +.+ -+||+|.+.-.+-.+...+. ...+++|+|+.-
T Consensus 245 rlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlvG 299 (615)
T PRK10875 245 RLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFLG 299 (615)
T ss_pred HHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEec
Confidence 444211 1 111 28999998776654444333 334577877654
No 488
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.57 E-value=0.057 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999976
No 489
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.1 Score=50.24 Aligned_cols=45 Identities=31% Similarity=0.408 Sum_probs=36.2
Q ss_pred CCCCCCCchhHHHHHHHH-------------hCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 137 PVTPGLDVPLQELKLELF-------------KDGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~-------------~~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
..+-|.+-.++++.+... -+.++-|.++|++|.|||.||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 345678888888877764 134688999999999999999999984
No 490
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.56 E-value=0.086 Score=51.39 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999984
No 491
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.56 E-value=0.05 Score=29.10 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=8.4
Q ss_pred CCCCEEeccCCCCCCcC
Q 003950 717 CSLKTLCLKGCSMFELP 733 (784)
Q Consensus 717 ~~L~~L~l~~n~l~~lp 733 (784)
++|+.|++++|.++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35667777777666655
No 492
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.53 E-value=0.074 Score=53.17 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=40.5
Q ss_pred HHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHH
Q 003950 147 QELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQ 208 (784)
Q Consensus 147 ~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 208 (784)
.+++..+. .....+|+|.|.||+|||||.-.+.....- ......++-|+-|+.++--.++-
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRE-RGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHH-CCcEEEEEEECCCCCCCCccccc
Confidence 45555555 456789999999999999999888763222 22223355666677766555443
No 493
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.52 E-value=0.055 Score=52.91 Aligned_cols=24 Identities=50% Similarity=0.697 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|+|++|+||||||+.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999987
No 494
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.49 E-value=0.12 Score=49.56 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=29.9
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|-+..+..+.-... +..-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHH
Confidence 356888777766654443 457899999999999999998864
No 495
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.49 E-value=0.57 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+++|+|..|.|||||.+.++.
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~G 49 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGG 49 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 496
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.48 E-value=0.33 Score=52.84 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=52.3
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHhcccccc-----cccCCceEEEEeCCCCCHHHHHHHHHHHcCC-CC-------CCCCC
Q 003950 158 RQVIVVSAPGGYGKTTLV-KKLCKDDQVL-----GKFKDNIFFVTVSQTPNVKGIVQKVYQHKGY-AV-------PEFQT 223 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa-~~v~~~~~~~-----~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~-------~~~~~ 223 (784)
-+.++|.|-.|+|||+|| ..+.+...+. ++- ..|+++-+++....-.-+.+.++.-+. .. .+.+.
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~-~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNA-VISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCC-CEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 467999999999999997 5667643221 122 236688888775433323333333221 00 01111
Q ss_pred hH-----HHHHHHHHHhcccCCCcEEEEEeCCCC
Q 003950 224 DE-----DAINDLERLLKPIRPEAILLVLDDVWS 252 (784)
Q Consensus 224 ~~-----~~~~~l~~~~~~l~~kr~LlVlDdv~~ 252 (784)
.. -..-.+.+.+.. +++.+|||+||+..
T Consensus 268 ~~r~~Apy~a~tiAEYFrd-~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMN-RGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCEEEEEcCchH
Confidence 11 112234444421 68999999999843
No 497
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.47 E-value=0.079 Score=55.57 Aligned_cols=44 Identities=25% Similarity=0.257 Sum_probs=36.8
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+||.+..+..+.-.+.+.+..-|.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45789998888887777676666788999999999999999975
No 498
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.47 E-value=0.06 Score=47.19 Aligned_cols=22 Identities=45% Similarity=0.877 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 003950 161 IVVSAPGGYGKTTLVKKLCKDD 182 (784)
Q Consensus 161 v~I~G~~GiGKTtLa~~v~~~~ 182 (784)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 499
>PRK08149 ATP synthase SpaL; Validated
Probab=93.47 E-value=0.22 Score=53.62 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=50.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC-CCHHHHHHHHHHHcCCC-------CCCCCCh----
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQKVYQHKGYA-------VPEFQTD---- 224 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~---- 224 (784)
.-..++|+|..|+|||||+..++.... -+. ++...+... .+..++........... ..+.+..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv-~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADV-FVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCe-EEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 356899999999999999999987321 122 223444433 35556666665532211 1111111
Q ss_pred -HHHHHHHHHHhcccCCCcEEEEEeCCC
Q 003950 225 -EDAINDLERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 225 -~~~~~~l~~~~~~l~~kr~LlVlDdv~ 251 (784)
......+.+.+. -++|.+||++||+-
T Consensus 225 a~~~a~tiAE~fr-~~G~~Vll~~DslT 251 (428)
T PRK08149 225 AALVATTVAEYFR-DQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEccchH
Confidence 111223334442 16999999999984
No 500
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.46 E-value=0.0085 Score=67.44 Aligned_cols=196 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred CCceEEEEEecCCCCcc--cChhccCCCCCcEEEeec--ccccCCcCcCccccCCCCCCCEEEecccC-CCCc----ccc
Q 003950 520 APEVKVVVLNVRTKKYT--LPKFLEKMDKLKVMIVTN--YGFFPAELSNIQVFGALSNLKRIRLEHVS-LPSL----TTV 590 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~--~p~~l~~l~~L~~L~l~~--~~~~~~~~~~l~~l~~l~~L~~L~L~~n~-l~~~----~~~ 590 (784)
++.++.+.+..+..... +-.....+++|+.|++++ ................+++|+.|+++.+. ++.. ...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Q ss_pred ccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCC--CCcccCCCCCCcEEEccCCCCCCCCchhccCC
Q 003950 591 RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIE--LPDGLCDIVSIKKLRITNCHKLSALPEGIGKL 668 (784)
Q Consensus 591 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l 668 (784)
.+++|+.|.+.+|.. +.+.....+...+++|+.|++++|...+. +.....++++|+.|.+..+.. +
T Consensus 267 ~c~~L~~L~l~~c~~--lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c 334 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSN--LTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C 334 (482)
T ss_pred hCCCcceEccCCCCc--cchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C
Q ss_pred CCCCEEEeecCCC---CCCCcccccCCCCCCEEeccCCCCCCccc--hhhhCCCCC--------------CEEeccCCC
Q 003950 669 VNLQMLTLASCTD---LSALPDTIGNLSNLNFLDISECLNIQELP--ERIGELCSL--------------KTLCLKGCS 728 (784)
Q Consensus 669 ~~L~~L~L~~~~~---~~~~p~~~~~l~~L~~L~l~~n~~~~~~p--~~l~~l~~L--------------~~L~l~~n~ 728 (784)
..++.+.+.++.. .......+..+++|+++.+..|. ..... ..+..++.| +.|+++.|.
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~ 412 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCR 412 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCc
Done!