Query 003950
Match_columns 784
No_of_seqs 554 out of 4576
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.8E-46 1.3E-50 421.5 22.3 311 132-471 124-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 6E-40 2.1E-44 372.8 20.6 285 136-462 127-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-39 5.8E-44 407.3 23.6 313 130-469 117-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4.5E-36 1.6E-40 344.7 20.8 311 131-467 118-450 (591)
5 4fcg_A Uncharacterized protein 99.9 1.1E-22 3.8E-27 214.6 20.4 225 521-754 81-315 (328)
6 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-22 4.9E-27 212.4 15.8 227 515-753 38-281 (313)
7 3rgz_A Protein brassinosteroid 99.9 5E-21 1.7E-25 226.0 18.3 224 520-753 417-717 (768)
8 3rgz_A Protein brassinosteroid 99.8 6.7E-21 2.3E-25 224.9 18.4 237 520-767 393-708 (768)
9 3v47_A TOLL-like receptor 5B a 99.8 8.3E-21 2.8E-25 210.7 17.9 234 520-754 78-385 (455)
10 1ogq_A PGIP-2, polygalacturona 99.8 2.6E-21 9E-26 202.8 13.0 220 519-751 74-302 (313)
11 4fcg_A Uncharacterized protein 99.8 3.6E-20 1.2E-24 195.3 20.0 215 543-771 79-309 (328)
12 2id5_A Lingo-1, leucine rich r 99.8 2E-19 7E-24 200.7 21.8 136 619-754 174-310 (477)
13 1xku_A Decorin; proteoglycan, 99.8 1.6E-19 5.4E-24 191.1 19.9 224 521-754 52-277 (330)
14 3oja_B Anopheles plasmodium-re 99.8 6.5E-20 2.2E-24 210.2 17.8 238 520-776 98-359 (597)
15 3o6n_A APL1; leucine-rich repe 99.8 8.3E-20 2.8E-24 198.2 17.7 245 520-778 68-355 (390)
16 3oja_A Leucine-rich immune mol 99.8 2.4E-20 8.2E-25 207.6 13.4 229 520-765 33-264 (487)
17 3zyj_A Leucine-rich repeat-con 99.8 1.8E-19 6.1E-24 198.7 19.1 223 521-752 64-291 (440)
18 4eco_A Uncharacterized protein 99.8 7.7E-21 2.6E-25 219.2 8.3 234 512-752 66-414 (636)
19 3t6q_A CD180 antigen; protein- 99.8 2.6E-19 9E-24 206.3 20.8 224 520-753 300-536 (606)
20 3zyi_A Leucine-rich repeat-con 99.8 2.5E-19 8.5E-24 198.3 19.7 223 521-752 75-302 (452)
21 1ozn_A Reticulon 4 receptor; N 99.8 6E-19 2.1E-23 182.5 21.0 208 535-753 24-238 (285)
22 2id5_A Lingo-1, leucine rich r 99.8 2.4E-19 8.1E-24 200.2 19.1 265 496-770 30-303 (477)
23 3v47_A TOLL-like receptor 5B a 99.8 1.5E-19 5.2E-24 200.5 17.2 268 496-770 28-378 (455)
24 2ft3_A Biglycan; proteoglycan, 99.8 3E-19 1E-23 189.1 18.0 223 521-754 54-278 (332)
25 2z7x_B TOLL-like receptor 1, v 99.8 7.6E-19 2.6E-23 198.4 22.3 157 618-777 321-483 (520)
26 2z66_A Variable lymphocyte rec 99.8 1.1E-19 3.8E-24 190.1 14.1 227 521-752 28-260 (306)
27 3o53_A Protein LRIM1, AGAP0063 99.8 6.9E-20 2.4E-24 192.5 12.0 217 520-753 33-250 (317)
28 4ecn_A Leucine-rich repeat pro 99.8 4.7E-20 1.6E-24 216.3 11.4 176 568-751 444-655 (876)
29 3vq2_A TLR4, TOLL-like recepto 99.8 3E-19 1E-23 205.8 17.9 222 520-754 306-535 (606)
30 3oja_B Anopheles plasmodium-re 99.8 4.2E-19 1.4E-23 203.5 18.3 218 541-769 71-330 (597)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.4E-18 8.1E-23 196.1 23.5 156 619-777 351-512 (562)
32 2z80_A TOLL-like receptor 2, v 99.8 2.1E-19 7.3E-24 192.0 13.7 223 520-752 75-313 (353)
33 3zyj_A Leucine-rich repeat-con 99.8 8.3E-19 2.8E-23 193.3 18.4 233 535-778 56-295 (440)
34 3zyi_A Leucine-rich repeat-con 99.8 1.1E-18 3.9E-23 193.0 19.0 233 535-778 67-306 (452)
35 2z66_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 186.0 14.2 229 535-776 20-262 (306)
36 4ecn_A Leucine-rich repeat pro 99.8 1.6E-18 5.4E-23 203.3 19.4 226 519-754 489-767 (876)
37 1p9a_G Platelet glycoprotein I 99.8 3.8E-18 1.3E-22 176.3 19.7 197 541-752 6-207 (290)
38 4eco_A Uncharacterized protein 99.8 3.6E-19 1.2E-23 205.2 13.1 244 519-770 247-543 (636)
39 3vq2_A TLR4, TOLL-like recepto 99.8 1.3E-18 4.4E-23 200.5 16.3 248 498-753 307-558 (606)
40 1xku_A Decorin; proteoglycan, 99.8 1.2E-17 4.3E-22 176.5 22.5 245 497-755 51-308 (330)
41 1ozn_A Reticulon 4 receptor; N 99.8 6.6E-18 2.3E-22 174.6 19.9 201 571-776 31-239 (285)
42 4fmz_A Internalin; leucine ric 99.8 1.3E-17 4.3E-22 177.9 22.7 248 498-767 88-337 (347)
43 3t6q_A CD180 antigen; protein- 99.8 3.8E-18 1.3E-22 196.6 19.5 247 519-772 276-533 (606)
44 3o6n_A APL1; leucine-rich repe 99.8 7.2E-18 2.5E-22 182.8 19.9 260 499-769 70-370 (390)
45 2o6q_A Variable lymphocyte rec 99.8 2E-17 6.8E-22 169.4 21.3 133 619-751 83-216 (270)
46 4fmz_A Internalin; leucine ric 99.8 2.9E-17 9.8E-22 175.1 22.7 230 519-771 86-319 (347)
47 1o6v_A Internalin A; bacterial 99.8 8.1E-17 2.8E-21 178.8 26.8 240 519-770 110-382 (466)
48 2z80_A TOLL-like receptor 2, v 99.8 1.5E-18 5.1E-23 185.4 12.3 250 521-777 52-316 (353)
49 2o6q_A Variable lymphocyte rec 99.8 2.3E-17 7.8E-22 169.0 19.6 201 573-778 17-221 (270)
50 1wwl_A Monocyte differentiatio 99.8 2.7E-18 9.2E-23 179.9 12.7 198 543-752 93-308 (312)
51 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-17 7.8E-22 174.6 19.7 243 498-755 54-309 (332)
52 1p9a_G Platelet glycoprotein I 99.8 1.1E-17 3.9E-22 172.7 16.9 203 568-777 6-210 (290)
53 3oja_A Leucine-rich immune mol 99.7 1.2E-18 4.2E-23 193.8 9.9 223 536-775 21-250 (487)
54 2z62_A TOLL-like receptor 4, v 99.7 1.3E-17 4.6E-22 171.4 15.9 206 535-752 20-236 (276)
55 1o6v_A Internalin A; bacterial 99.7 5E-17 1.7E-21 180.5 21.6 213 520-754 176-389 (466)
56 1ziw_A TOLL-like receptor 3; i 99.7 4.2E-17 1.4E-21 190.5 22.0 255 519-778 327-625 (680)
57 3rfs_A Internalin B, repeat mo 99.7 2.6E-17 8.8E-22 168.7 17.6 182 540-730 36-218 (272)
58 3rfs_A Internalin B, repeat mo 99.7 1.4E-17 4.9E-22 170.6 15.7 185 540-740 58-246 (272)
59 3j0a_A TOLL-like receptor 5; m 99.7 2.4E-17 8.1E-22 196.7 18.8 110 645-754 266-376 (844)
60 1ziw_A TOLL-like receptor 3; i 99.7 4.1E-17 1.4E-21 190.6 19.9 248 519-767 270-564 (680)
61 3bz5_A Internalin-J, INLJ; leu 99.7 8.4E-17 2.9E-21 177.3 21.0 202 520-750 63-264 (457)
62 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-18 5.4E-23 182.1 6.9 222 538-776 27-251 (317)
63 3j0a_A TOLL-like receptor 5; m 99.7 3.2E-17 1.1E-21 195.5 18.8 264 496-769 22-368 (844)
64 3m19_A Variable lymphocyte rec 99.7 6.3E-17 2.2E-21 163.7 17.8 176 573-752 15-191 (251)
65 2z62_A TOLL-like receptor 4, v 99.7 1.8E-17 6.1E-22 170.5 13.9 203 572-778 28-240 (276)
66 2z7x_B TOLL-like receptor 1, v 99.7 1.9E-17 6.5E-22 186.9 15.3 221 521-753 247-481 (520)
67 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 5.4E-17 1.8E-21 184.9 18.6 244 497-753 51-441 (562)
68 2z81_A CD282 antigen, TOLL-lik 99.7 3.1E-17 1.1E-21 186.6 16.4 151 498-655 26-182 (549)
69 2z63_A TOLL-like receptor 4, v 99.7 2.5E-17 8.5E-22 188.3 15.7 179 569-752 344-530 (570)
70 1h6u_A Internalin H; cell adhe 99.7 4.6E-17 1.6E-21 169.9 15.6 168 568-750 59-227 (308)
71 3bz5_A Internalin-J, INLJ; leu 99.7 9.8E-17 3.3E-21 176.8 17.8 177 568-758 166-357 (457)
72 2xwt_C Thyrotropin receptor; s 99.7 1.3E-16 4.6E-21 160.1 16.7 199 535-750 24-236 (239)
73 2z81_A CD282 antigen, TOLL-lik 99.7 5.4E-17 1.8E-21 184.6 15.6 149 521-675 26-178 (549)
74 4glp_A Monocyte differentiatio 99.7 4.1E-17 1.4E-21 170.8 12.8 199 543-752 89-306 (310)
75 2z63_A TOLL-like receptor 4, v 99.7 4.1E-17 1.4E-21 186.5 13.7 246 520-777 281-533 (570)
76 4glp_A Monocyte differentiatio 99.7 8.6E-18 2.9E-22 175.9 6.7 226 544-773 63-305 (310)
77 1wwl_A Monocyte differentiatio 99.7 5E-17 1.7E-21 170.2 10.3 229 536-770 56-303 (312)
78 1jl5_A Outer protein YOPM; leu 99.7 6.7E-17 2.3E-21 178.0 11.8 208 522-752 12-249 (454)
79 2ca6_A RAN GTPase-activating p 99.7 5.9E-18 2E-22 183.2 2.3 247 520-766 31-333 (386)
80 2qen_A Walker-type ATPase; unk 99.7 3E-15 1E-19 159.6 22.9 288 132-463 7-349 (350)
81 1h6u_A Internalin H; cell adhe 99.7 5.1E-16 1.7E-20 162.0 16.4 189 568-772 37-227 (308)
82 3g06_A SSPH2 (leucine-rich rep 99.7 1.7E-15 5.9E-20 171.9 21.5 226 498-754 61-298 (622)
83 3m19_A Variable lymphocyte rec 99.7 1.2E-15 3.9E-20 154.4 17.4 155 573-731 36-193 (251)
84 4ezg_A Putative uncharacterize 99.7 5E-16 1.7E-20 150.7 13.3 153 590-752 41-193 (197)
85 3g06_A SSPH2 (leucine-rich rep 99.7 2.9E-15 1E-19 170.0 20.9 217 521-773 61-295 (622)
86 2xwt_C Thyrotropin receptor; s 99.6 6.6E-16 2.3E-20 155.0 12.8 194 572-774 31-237 (239)
87 2ca6_A RAN GTPase-activating p 99.6 4.2E-17 1.4E-21 176.5 2.9 237 535-771 22-311 (386)
88 1h6t_A Internalin B; cell adhe 99.6 1.7E-15 5.9E-20 156.5 14.6 175 540-733 41-216 (291)
89 1w5s_A Origin recognition comp 99.6 1.2E-14 4.1E-19 158.7 21.7 285 135-435 20-371 (412)
90 4ezg_A Putative uncharacterize 99.6 2E-15 6.7E-20 146.5 13.4 109 619-730 86-194 (197)
91 2ast_B S-phase kinase-associat 99.6 1.7E-16 5.7E-21 168.3 5.9 225 538-770 61-303 (336)
92 2fna_A Conserved hypothetical 99.6 1.2E-14 4E-19 155.5 20.2 287 134-462 10-356 (357)
93 2v70_A SLIT-2, SLIT homolog 2 99.6 5.4E-15 1.8E-19 145.9 14.9 153 575-730 14-166 (220)
94 3cvr_A Invasion plasmid antige 99.6 8.6E-15 2.9E-19 164.0 18.2 157 572-753 80-243 (571)
95 1h6t_A Internalin B; cell adhe 99.6 5E-15 1.7E-19 153.0 13.8 170 568-752 42-212 (291)
96 1m9s_A Internalin B; cell inva 99.6 7E-15 2.4E-19 166.7 15.6 175 540-733 38-213 (605)
97 2v9t_B SLIT homolog 2 protein 99.6 1E-14 3.5E-19 144.0 14.8 152 575-730 14-165 (220)
98 2ast_B S-phase kinase-associat 99.6 2.5E-16 8.7E-21 167.0 2.6 218 547-774 49-283 (336)
99 1m9s_A Internalin B; cell inva 99.6 6.8E-15 2.3E-19 166.8 14.3 171 568-753 39-210 (605)
100 1jl5_A Outer protein YOPM; leu 99.6 2.4E-14 8.3E-19 157.5 17.6 92 669-768 317-424 (454)
101 2v9t_B SLIT homolog 2 protein 99.6 2.3E-14 7.9E-19 141.4 14.9 150 596-752 14-164 (220)
102 2o6s_A Variable lymphocyte rec 99.6 1.8E-14 6.2E-19 141.1 14.0 140 591-741 50-190 (208)
103 2v70_A SLIT-2, SLIT homolog 2 99.6 2.5E-14 8.4E-19 141.2 14.4 152 595-753 13-166 (220)
104 2xot_A Amphoterin-induced prot 99.6 1.5E-14 5.1E-19 154.6 13.7 174 575-752 21-201 (361)
105 3cvr_A Invasion plasmid antige 99.6 2.3E-14 8E-19 160.5 15.9 188 522-741 60-255 (571)
106 3goz_A Leucine-rich repeat-con 99.6 3.8E-16 1.3E-20 167.2 1.2 181 572-752 80-296 (362)
107 3e6j_A Variable lymphocyte rec 99.6 4.5E-14 1.5E-18 140.3 16.1 130 621-751 40-170 (229)
108 3e6j_A Variable lymphocyte rec 99.6 4.5E-14 1.5E-18 140.3 16.0 152 574-730 21-172 (229)
109 2o6s_A Variable lymphocyte rec 99.5 7.3E-14 2.5E-18 136.7 15.8 152 575-730 10-161 (208)
110 4g8a_A TOLL-like receptor 4; l 99.5 2.2E-14 7.7E-19 166.0 13.8 209 540-752 366-579 (635)
111 4ay9_X Follicle-stimulating ho 99.5 8.2E-14 2.8E-18 148.2 15.8 216 521-751 30-257 (350)
112 2xot_A Amphoterin-induced prot 99.5 4.8E-14 1.7E-18 150.6 13.6 174 596-777 21-204 (361)
113 4ay9_X Follicle-stimulating ho 99.5 2.1E-13 7.2E-18 145.0 18.5 162 568-734 50-219 (350)
114 3goz_A Leucine-rich repeat-con 99.5 5.9E-16 2E-20 165.7 -1.9 219 533-751 10-264 (362)
115 2je0_A Acidic leucine-rich nuc 99.5 3.2E-14 1.1E-18 131.1 9.7 128 619-748 15-148 (149)
116 1z7x_W Ribonuclease inhibitor; 99.5 1.5E-15 5E-20 168.7 0.3 86 645-730 199-297 (461)
117 1dce_A Protein (RAB geranylger 99.5 7.2E-16 2.5E-20 173.8 -2.4 121 622-747 442-567 (567)
118 1z7x_W Ribonuclease inhibitor; 99.5 1.2E-15 4.1E-20 169.3 -0.9 255 498-754 3-298 (461)
119 2ell_A Acidic leucine-rich nuc 99.5 6.4E-14 2.2E-18 132.0 10.5 130 620-752 23-159 (168)
120 4g8a_A TOLL-like receptor 4; l 99.5 1.6E-13 5.6E-18 158.7 13.8 205 518-730 368-580 (635)
121 1xeu_A Internalin C; cellular 99.5 5.4E-14 1.8E-18 142.9 8.0 170 544-733 18-188 (263)
122 2ell_A Acidic leucine-rich nuc 99.4 4.1E-13 1.4E-17 126.4 11.7 114 619-735 47-165 (168)
123 1fnn_A CDC6P, cell division co 99.4 1.8E-11 6.3E-16 132.2 26.2 283 136-435 16-351 (389)
124 2qby_B CDC6 homolog 3, cell di 99.4 4.8E-12 1.6E-16 136.5 20.4 278 137-434 20-338 (384)
125 1xeu_A Internalin C; cellular 99.4 6.7E-13 2.3E-17 134.7 12.8 150 540-707 36-186 (263)
126 2v1u_A Cell division control p 99.4 1.2E-11 4.1E-16 133.6 23.3 284 136-435 18-351 (387)
127 1w8a_A SLIT protein; signaling 99.4 1.6E-12 5.5E-17 125.1 11.4 129 575-706 11-139 (192)
128 1a9n_A U2A', U2A'; complex (nu 99.4 1.3E-12 4.4E-17 124.0 10.4 137 619-760 17-160 (176)
129 1dce_A Protein (RAB geranylger 99.4 9.6E-15 3.3E-19 164.6 -5.6 194 569-768 346-565 (567)
130 2qby_A CDC6 homolog 1, cell di 99.4 2E-11 6.7E-16 131.8 20.2 284 135-434 18-347 (386)
131 2wfh_A SLIT homolog 2 protein 99.4 5.6E-12 1.9E-16 121.3 13.8 124 625-752 14-138 (193)
132 1w8a_A SLIT protein; signaling 99.4 3.3E-12 1.1E-16 122.9 12.2 128 596-730 11-139 (192)
133 3ogk_B Coronatine-insensitive 99.3 1E-13 3.4E-18 159.1 1.1 247 520-772 269-547 (592)
134 2wfh_A SLIT homolog 2 protein 99.3 6.6E-12 2.3E-16 120.8 12.2 109 621-730 31-139 (193)
135 2je0_A Acidic leucine-rich nuc 99.3 4.1E-12 1.4E-16 116.8 10.1 124 643-768 15-145 (149)
136 4b8c_D Glucose-repressible alc 99.3 2.1E-12 7.1E-17 150.3 9.3 158 572-736 173-336 (727)
137 2o6r_A Variable lymphocyte rec 99.3 1.3E-11 4.4E-16 117.1 13.1 110 621-730 28-137 (177)
138 4b8c_D Glucose-repressible alc 99.3 2E-12 6.9E-17 150.4 8.1 140 588-735 219-360 (727)
139 1njg_A DNA polymerase III subu 99.3 8.2E-11 2.8E-15 118.1 18.3 192 136-338 22-230 (250)
140 2o6r_A Variable lymphocyte rec 99.3 2.8E-11 9.5E-16 114.8 13.4 133 574-710 9-141 (177)
141 2chg_A Replication factor C sm 99.3 1.1E-10 3.8E-15 115.3 17.9 177 136-335 16-203 (226)
142 2p1m_B Transport inhibitor res 99.3 4E-13 1.4E-17 154.1 0.1 234 535-772 279-540 (594)
143 3ogk_B Coronatine-insensitive 99.3 3.8E-12 1.3E-16 145.9 6.9 199 569-771 290-521 (592)
144 1a9n_A U2A', U2A'; complex (nu 99.2 1.7E-11 5.7E-16 116.2 8.4 107 620-731 41-154 (176)
145 2p1m_B Transport inhibitor res 99.2 4.7E-12 1.6E-16 145.2 2.0 249 520-773 210-516 (594)
146 1ds9_A Outer arm dynein; leuci 99.1 9.6E-13 3.3E-17 127.5 -4.1 108 640-752 43-152 (198)
147 2r9u_A Variable lymphocyte rec 99.1 2.1E-10 7.3E-15 108.1 11.7 108 624-734 15-122 (174)
148 1ds9_A Outer arm dynein; leuci 99.1 8.9E-13 3E-17 127.8 -5.9 123 619-746 46-180 (198)
149 3g39_A Variable lymphocyte rec 99.1 2.8E-10 9.4E-15 106.9 11.4 105 623-730 11-115 (170)
150 2r9u_A Variable lymphocyte rec 99.1 6.6E-10 2.3E-14 104.7 11.6 103 647-752 14-117 (174)
151 3g39_A Variable lymphocyte rec 99.1 7.5E-10 2.5E-14 104.0 11.4 104 646-752 10-114 (170)
152 3sb4_A Hypothetical leucine ri 99.0 8.7E-10 3E-14 115.9 13.0 101 644-746 225-327 (329)
153 1sxj_B Activator 1 37 kDa subu 99.0 2.1E-09 7.2E-14 112.7 15.6 178 136-336 20-210 (323)
154 1hqc_A RUVB; extended AAA-ATPa 99.0 8.6E-09 3E-13 108.0 19.7 169 136-338 11-213 (324)
155 3qfl_A MLA10; coiled-coil, (CC 99.0 8.2E-11 2.8E-15 101.1 2.6 55 2-56 24-80 (115)
156 1iqp_A RFCS; clamp loader, ext 98.9 5.9E-09 2E-13 109.4 12.7 175 136-336 24-212 (327)
157 3un9_A NLR family member X1; l 98.8 2.6E-10 8.8E-15 121.5 -0.9 157 571-730 71-252 (372)
158 3un9_A NLR family member X1; l 98.8 2.6E-10 8.9E-15 121.4 -0.9 170 544-713 71-259 (372)
159 2ifg_A High affinity nerve gro 98.8 9.3E-09 3.2E-13 108.9 10.7 102 627-730 14-116 (347)
160 3sb4_A Hypothetical leucine ri 98.8 9.5E-09 3.3E-13 107.9 9.9 102 620-724 225-328 (329)
161 2ifg_A High affinity nerve gro 98.8 1.4E-08 4.9E-13 107.5 10.5 104 649-753 12-116 (347)
162 1jr3_A DNA polymerase III subu 98.8 1.4E-07 4.9E-12 100.9 17.1 188 137-336 16-221 (373)
163 3te6_A Regulatory protein SIR3 98.7 6.2E-08 2.1E-12 99.1 13.2 162 138-304 21-212 (318)
164 2chq_A Replication factor C sm 98.7 5.1E-08 1.8E-12 101.8 11.2 176 136-335 16-203 (319)
165 4fdw_A Leucine rich hypothetic 98.7 3.9E-07 1.3E-11 97.8 17.0 173 568-751 176-356 (401)
166 4fdw_A Leucine rich hypothetic 98.6 4.8E-07 1.6E-11 97.1 16.5 206 532-754 166-384 (401)
167 1sxj_D Activator 1 41 kDa subu 98.6 7.7E-07 2.6E-11 94.3 16.6 188 136-335 36-234 (353)
168 2ra8_A Uncharacterized protein 98.6 5.1E-08 1.7E-12 102.8 7.2 150 618-771 169-339 (362)
169 3bos_A Putative DNA replicatio 98.5 5.8E-07 2E-11 89.4 11.6 165 137-335 28-216 (242)
170 1sxj_A Activator 1 95 kDa subu 98.5 1.6E-06 5.3E-11 96.5 15.8 185 136-336 38-253 (516)
171 1jbk_A CLPB protein; beta barr 98.4 2.9E-07 9.8E-12 88.0 7.5 44 137-180 22-65 (195)
172 2ra8_A Uncharacterized protein 98.4 1.5E-07 5.2E-12 99.1 5.5 83 667-751 250-341 (362)
173 3u61_B DNA polymerase accessor 98.4 4.9E-06 1.7E-10 86.8 16.1 170 136-333 25-213 (324)
174 3pfi_A Holliday junction ATP-d 98.4 6.2E-06 2.1E-10 86.6 16.5 165 136-335 28-226 (338)
175 1sxj_E Activator 1 40 kDa subu 98.4 1.8E-06 6.2E-11 91.4 12.5 186 136-335 13-236 (354)
176 1d2n_A N-ethylmaleimide-sensit 98.3 8E-06 2.7E-10 82.8 15.8 160 137-328 33-229 (272)
177 3h4m_A Proteasome-activating n 98.3 5.5E-06 1.9E-10 84.7 13.8 170 136-334 16-229 (285)
178 3pvs_A Replication-associated 98.3 1.5E-05 5.2E-10 86.3 17.7 170 135-334 24-213 (447)
179 1a5t_A Delta prime, HOLB; zinc 98.3 1.7E-05 5.7E-10 82.9 16.6 163 143-335 8-204 (334)
180 2z4s_A Chromosomal replication 98.2 7.2E-06 2.5E-10 89.0 13.3 171 140-333 109-303 (440)
181 3d8b_A Fidgetin-like protein 1 98.2 1.5E-05 5.1E-10 84.1 14.6 173 137-337 84-296 (357)
182 2qz4_A Paraplegin; AAA+, SPG7, 98.2 3.8E-05 1.3E-09 77.3 16.7 170 137-333 6-219 (262)
183 1sxj_C Activator 1 40 kDa subu 98.2 1.8E-05 6.2E-10 83.0 14.6 174 137-333 25-209 (340)
184 1xwi_A SKD1 protein; VPS4B, AA 98.2 3.7E-05 1.3E-09 79.8 16.5 173 137-336 12-223 (322)
185 2p65_A Hypothetical protein PF 98.2 2.1E-06 7.1E-11 81.5 6.4 44 137-180 22-65 (187)
186 3b9p_A CG5977-PA, isoform A; A 98.1 5.1E-05 1.7E-09 77.9 16.7 172 137-335 21-232 (297)
187 3uk6_A RUVB-like 2; hexameric 98.1 3.9E-05 1.3E-09 81.6 16.1 192 136-334 43-301 (368)
188 3eie_A Vacuolar protein sortin 98.1 3.4E-05 1.1E-09 80.2 14.5 172 137-336 18-228 (322)
189 3e4g_A ATP synthase subunit S, 98.1 4.2E-06 1.4E-10 77.2 6.2 36 645-680 61-96 (176)
190 2qp9_X Vacuolar protein sortin 98.0 3E-05 1E-09 81.6 12.8 171 137-335 51-260 (355)
191 3vfd_A Spastin; ATPase, microt 98.0 7.4E-05 2.5E-09 79.9 15.6 173 136-336 114-326 (389)
192 1io0_A Tropomodulin; LRR prote 98.0 3.8E-06 1.3E-10 79.6 4.5 113 641-753 32-164 (185)
193 1l8q_A Chromosomal replication 98.0 0.00011 3.9E-09 76.3 16.3 165 140-331 15-203 (324)
194 3e4g_A ATP synthase subunit S, 98.0 4.9E-06 1.7E-10 76.8 4.5 35 622-656 62-96 (176)
195 3n70_A Transport activator; si 98.0 2.9E-05 1E-09 70.1 9.6 109 138-277 2-116 (145)
196 3syl_A Protein CBBX; photosynt 97.9 5.7E-05 2E-09 78.0 12.8 148 138-305 32-219 (309)
197 3cf0_A Transitional endoplasmi 97.9 8.3E-05 2.8E-09 76.4 13.9 165 137-330 15-222 (301)
198 2zan_A Vacuolar protein sortin 97.9 8.8E-05 3E-09 80.6 14.5 173 137-335 134-344 (444)
199 4b4t_J 26S protease regulatory 97.9 0.00011 3.9E-09 76.9 14.2 163 137-328 148-353 (405)
200 3ec2_A DNA replication protein 97.9 4.9E-05 1.7E-09 71.5 10.3 99 158-277 38-143 (180)
201 1io0_A Tropomodulin; LRR prote 97.9 2.9E-06 9.8E-11 80.4 1.3 112 619-730 34-164 (185)
202 2gno_A DNA polymerase III, gam 97.9 0.00011 3.7E-09 75.2 13.1 141 141-303 1-152 (305)
203 1qvr_A CLPB protein; coiled co 97.8 7.9E-05 2.7E-09 88.1 13.0 147 136-302 169-344 (854)
204 4b4t_L 26S protease subunit RP 97.8 0.00031 1.1E-08 74.8 15.4 163 137-328 181-386 (437)
205 4b4t_H 26S protease regulatory 97.7 0.00028 9.5E-09 75.0 13.8 163 137-328 209-414 (467)
206 2w58_A DNAI, primosome compone 97.7 3.6E-05 1.2E-09 74.0 6.6 119 137-277 25-159 (202)
207 4b4t_K 26S protease regulatory 97.7 0.00038 1.3E-08 74.1 14.8 44 137-180 172-228 (428)
208 3co5_A Putative two-component 97.7 7E-05 2.4E-09 67.3 7.9 44 137-180 4-49 (143)
209 3pxg_A Negative regulator of g 97.7 0.00019 6.7E-09 78.4 12.9 44 137-180 180-223 (468)
210 3rw6_A Nuclear RNA export fact 97.7 3.3E-05 1.1E-09 76.9 5.9 13 718-730 221-233 (267)
211 4b4t_I 26S protease regulatory 97.7 0.0005 1.7E-08 72.3 14.7 163 137-328 182-387 (437)
212 4fs7_A Uncharacterized protein 97.7 0.0003 1E-08 75.4 13.6 125 619-750 251-376 (394)
213 3rw6_A Nuclear RNA export fact 97.7 4.3E-05 1.5E-09 76.1 6.4 80 642-723 167-257 (267)
214 1ofh_A ATP-dependent HSL prote 97.7 0.00012 4.2E-09 75.5 9.8 44 137-180 15-72 (310)
215 4b4t_M 26S protease regulatory 97.6 0.00041 1.4E-08 73.9 13.5 163 137-328 181-386 (434)
216 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00036 1.2E-08 81.7 13.2 148 137-303 186-362 (758)
217 4fcw_A Chaperone protein CLPB; 97.6 0.00035 1.2E-08 72.1 11.5 43 138-180 18-69 (311)
218 1in4_A RUVB, holliday junction 97.4 0.0021 7.3E-08 66.8 15.7 161 137-333 25-220 (334)
219 2r62_A Cell division protease 97.4 7.9E-05 2.7E-09 75.2 4.4 45 136-180 10-66 (268)
220 2kjq_A DNAA-related protein; s 97.4 0.00014 4.7E-09 65.8 5.4 56 137-198 18-73 (149)
221 3pxi_A Negative regulator of g 97.4 0.0011 3.6E-08 77.5 14.1 44 137-180 180-223 (758)
222 3hu3_A Transitional endoplasmi 97.4 0.00054 1.9E-08 74.8 10.7 170 137-335 204-414 (489)
223 4gt6_A Cell surface protein; l 97.4 0.0028 9.7E-08 67.7 16.1 108 640-751 260-368 (394)
224 3cf2_A TER ATPase, transitiona 97.4 0.0021 7.3E-08 73.7 15.5 164 137-329 204-407 (806)
225 1lv7_A FTSH; alpha/beta domain 97.3 0.0022 7.5E-08 64.0 13.8 45 136-180 11-67 (257)
226 4fs7_A Uncharacterized protein 97.3 0.002 6.7E-08 68.9 14.2 214 539-772 156-376 (394)
227 2ce7_A Cell division protein F 97.3 0.0012 4.3E-08 71.4 12.6 164 137-329 16-221 (476)
228 2bjv_A PSP operon transcriptio 97.3 0.00099 3.4E-08 66.9 10.3 44 137-180 6-51 (265)
229 1ojl_A Transcriptional regulat 97.2 0.0006 2.1E-08 69.9 8.1 44 137-180 2-47 (304)
230 3t15_A Ribulose bisphosphate c 97.1 0.0036 1.2E-07 63.7 13.0 23 158-180 36-58 (293)
231 2c9o_A RUVB-like 1; hexameric 97.0 0.0063 2.2E-07 66.2 14.1 44 137-180 37-85 (456)
232 2cvh_A DNA repair and recombin 96.9 0.0029 1E-07 61.2 9.9 44 158-207 20-63 (220)
233 3pxi_A Negative regulator of g 96.9 0.0014 4.9E-08 76.4 8.9 44 137-180 491-543 (758)
234 2dhr_A FTSH; AAA+ protein, hex 96.9 0.018 6.2E-07 62.7 16.9 166 135-329 29-236 (499)
235 3m6a_A ATP-dependent protease 96.9 0.004 1.4E-07 69.2 11.3 43 138-180 82-130 (543)
236 1qvr_A CLPB protein; coiled co 96.8 0.0067 2.3E-07 71.6 13.3 43 138-180 559-610 (854)
237 2r44_A Uncharacterized protein 96.8 0.0032 1.1E-07 65.4 9.4 42 137-180 27-68 (331)
238 2qgz_A Helicase loader, putati 96.8 0.00072 2.5E-08 69.3 4.0 49 146-197 137-189 (308)
239 1ypw_A Transitional endoplasmi 96.7 0.0076 2.6E-07 70.3 12.9 44 137-180 204-260 (806)
240 1ixz_A ATP-dependent metallopr 96.7 0.019 6.3E-07 57.0 13.5 44 137-180 16-71 (254)
241 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0044 1.5E-07 72.4 9.7 44 137-180 458-510 (758)
242 2x8a_A Nuclear valosin-contain 96.5 0.034 1.2E-06 55.7 14.3 142 137-303 10-191 (274)
243 3io5_A Recombination and repai 96.5 0.0073 2.5E-07 60.7 9.0 87 159-252 29-122 (333)
244 4gt6_A Cell surface protein; l 96.4 0.056 1.9E-06 57.5 16.2 126 618-750 262-388 (394)
245 4h09_A Hypothetical leucine ri 96.4 0.076 2.6E-06 56.0 16.6 126 620-749 216-342 (379)
246 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0012 3.9E-08 66.8 2.1 34 158-197 123-156 (331)
247 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.016 5.3E-07 56.6 10.4 47 158-209 23-69 (235)
248 2z43_A DNA repair and recombin 96.3 0.0067 2.3E-07 62.6 7.9 58 158-216 107-167 (324)
249 1n0w_A DNA repair protein RAD5 96.2 0.0092 3.2E-07 58.7 7.8 57 158-215 24-83 (243)
250 1v5w_A DMC1, meiotic recombina 96.2 0.018 6.2E-07 59.8 10.2 58 158-216 122-182 (343)
251 2i1q_A DNA repair and recombin 96.1 0.0082 2.8E-07 62.0 7.4 58 158-216 98-168 (322)
252 2b8t_A Thymidine kinase; deoxy 96.0 0.0041 1.4E-07 59.9 3.9 111 157-277 11-126 (223)
253 3hr8_A Protein RECA; alpha and 96.0 0.017 5.8E-07 59.9 8.9 85 158-252 61-150 (356)
254 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.014 4.7E-07 63.7 7.8 42 137-180 22-63 (500)
255 3dm5_A SRP54, signal recogniti 95.8 0.059 2E-06 57.3 12.1 24 157-180 99-122 (443)
256 2zr9_A Protein RECA, recombina 95.7 0.028 9.6E-07 58.4 9.0 84 158-251 61-149 (349)
257 1xp8_A RECA protein, recombina 95.6 0.031 1.1E-06 58.3 9.1 84 158-251 74-162 (366)
258 1g5t_A COB(I)alamin adenosyltr 95.6 0.017 6E-07 53.8 6.2 117 158-277 28-163 (196)
259 1rz3_A Hypothetical protein rb 95.5 0.009 3.1E-07 56.9 4.2 39 142-180 3-44 (201)
260 3kl4_A SRP54, signal recogniti 95.5 0.086 2.9E-06 56.1 12.0 38 157-197 96-133 (433)
261 1pgv_A TMD-1, tropomodulin TMD 95.5 0.019 6.4E-07 53.8 6.1 108 645-752 41-169 (197)
262 1jr3_D DNA polymerase III, del 95.5 0.14 4.7E-06 53.2 13.5 158 148-334 8-183 (343)
263 4h09_A Hypothetical leucine ri 95.4 0.5 1.7E-05 49.6 18.0 108 639-750 211-320 (379)
264 1u94_A RECA protein, recombina 95.4 0.025 8.4E-07 58.9 7.3 84 158-251 63-151 (356)
265 1sky_E F1-ATPase, F1-ATP synth 95.3 0.025 8.4E-07 60.4 6.9 101 149-251 141-255 (473)
266 1qhx_A CPT, protein (chloramph 95.2 0.0093 3.2E-07 55.4 3.0 22 159-180 4-25 (178)
267 1vma_A Cell division protein F 95.1 0.027 9.3E-07 57.2 6.3 38 157-197 103-140 (306)
268 3lda_A DNA repair protein RAD5 95.0 0.046 1.6E-06 57.8 8.1 58 158-216 178-238 (400)
269 3umf_A Adenylate kinase; rossm 95.0 0.028 9.4E-07 53.9 5.9 24 157-180 28-51 (217)
270 3lw7_A Adenylate kinase relate 94.9 0.013 4.3E-07 54.3 3.1 20 159-178 2-21 (179)
271 3c8u_A Fructokinase; YP_612366 94.9 0.016 5.5E-07 55.4 3.8 35 146-180 8-44 (208)
272 3bh0_A DNAB-like replicative h 94.9 0.077 2.6E-06 54.3 9.1 52 158-214 68-119 (315)
273 1pzn_A RAD51, DNA repair and r 94.8 0.067 2.3E-06 55.6 8.7 56 158-214 131-189 (349)
274 3kb2_A SPBC2 prophage-derived 94.8 0.013 4.4E-07 54.1 3.0 22 159-180 2-23 (173)
275 1g8p_A Magnesium-chelatase 38 94.8 0.011 3.7E-07 61.9 2.5 44 137-180 24-67 (350)
276 3ice_A Transcription terminati 94.8 0.017 6E-07 59.5 3.9 51 149-201 164-216 (422)
277 1zp6_A Hypothetical protein AT 94.8 0.017 5.9E-07 54.3 3.7 24 157-180 8-31 (191)
278 2xxa_A Signal recognition part 94.7 0.053 1.8E-06 57.9 7.8 40 157-198 99-138 (433)
279 1ly1_A Polynucleotide kinase; 94.7 0.017 5.8E-07 53.7 3.4 22 159-180 3-24 (181)
280 2px0_A Flagellar biosynthesis 94.6 0.092 3.2E-06 53.1 8.9 87 157-250 104-191 (296)
281 2ffh_A Protein (FFH); SRP54, s 94.6 0.045 1.5E-06 58.1 6.9 38 157-197 97-134 (425)
282 3uie_A Adenylyl-sulfate kinase 94.6 0.022 7.4E-07 54.1 4.1 27 154-180 21-47 (200)
283 3vaa_A Shikimate kinase, SK; s 94.6 0.016 5.4E-07 55.1 3.0 24 157-180 24-47 (199)
284 1kgd_A CASK, peripheral plasma 94.6 0.017 5.7E-07 53.9 3.0 23 158-180 5-27 (180)
285 2ga8_A Hypothetical 39.9 kDa p 94.5 0.02 6.7E-07 58.8 3.7 41 140-180 2-46 (359)
286 3hws_A ATP-dependent CLP prote 94.5 0.021 7.2E-07 60.0 4.0 43 138-180 16-73 (363)
287 1um8_A ATP-dependent CLP prote 94.5 0.025 8.4E-07 59.8 4.5 43 138-180 22-94 (376)
288 1j8m_F SRP54, signal recogniti 94.5 0.047 1.6E-06 55.2 6.3 56 158-216 98-154 (297)
289 3trf_A Shikimate kinase, SK; a 94.5 0.018 6.3E-07 53.8 3.0 23 158-180 5-27 (185)
290 1kag_A SKI, shikimate kinase I 94.4 0.015 5.2E-07 53.6 2.4 22 159-180 5-26 (173)
291 4eun_A Thermoresistant glucoki 94.4 0.02 6.7E-07 54.4 3.2 25 156-180 27-51 (200)
292 1odf_A YGR205W, hypothetical 3 94.3 0.039 1.3E-06 55.6 5.1 24 157-180 30-53 (290)
293 2ck3_D ATP synthase subunit be 94.2 0.086 2.9E-06 56.1 7.8 100 148-250 142-262 (482)
294 1nks_A Adenylate kinase; therm 94.2 0.023 7.9E-07 53.4 3.2 22 159-180 2-23 (194)
295 1iy2_A ATP-dependent metallopr 94.2 0.046 1.6E-06 55.0 5.6 45 136-180 39-95 (278)
296 3cf2_A TER ATPase, transitiona 94.2 0.076 2.6E-06 61.0 7.8 44 137-180 477-533 (806)
297 1knq_A Gluconate kinase; ALFA/ 94.2 0.026 8.8E-07 52.2 3.4 23 158-180 8-30 (175)
298 1fx0_B ATP synthase beta chain 94.2 0.073 2.5E-06 56.9 7.1 100 149-251 155-276 (498)
299 2hf9_A Probable hydrogenase ni 94.2 0.038 1.3E-06 53.5 4.7 34 147-180 27-60 (226)
300 2rhm_A Putative kinase; P-loop 94.2 0.028 9.4E-07 52.9 3.6 23 158-180 5-27 (193)
301 4gp7_A Metallophosphoesterase; 94.1 0.027 9.1E-07 52.0 3.3 23 158-180 9-31 (171)
302 2v3c_C SRP54, signal recogniti 94.1 0.096 3.3E-06 56.0 8.0 23 158-180 99-121 (432)
303 1zuh_A Shikimate kinase; alpha 94.1 0.025 8.5E-07 51.9 3.0 23 158-180 7-29 (168)
304 1ex7_A Guanylate kinase; subst 94.0 0.021 7.2E-07 53.2 2.4 22 159-180 2-23 (186)
305 3t61_A Gluconokinase; PSI-biol 94.0 0.022 7.4E-07 54.2 2.6 23 158-180 18-40 (202)
306 3tau_A Guanylate kinase, GMP k 94.0 0.029 9.7E-07 53.7 3.4 24 157-180 7-30 (208)
307 1kht_A Adenylate kinase; phosp 94.0 0.027 9.3E-07 52.8 3.1 22 159-180 4-25 (192)
308 2yvu_A Probable adenylyl-sulfa 94.0 0.025 8.4E-07 53.0 2.8 24 157-180 12-35 (186)
309 2bdt_A BH3686; alpha-beta prot 93.9 0.031 1E-06 52.5 3.4 22 159-180 3-24 (189)
310 2ze6_A Isopentenyl transferase 93.9 0.029 9.8E-07 55.5 3.3 22 159-180 2-23 (253)
311 3iij_A Coilin-interacting nucl 93.9 0.022 7.7E-07 52.9 2.4 23 158-180 11-33 (180)
312 2wsm_A Hydrogenase expression/ 93.9 0.036 1.2E-06 53.4 4.0 36 145-180 17-52 (221)
313 2qor_A Guanylate kinase; phosp 93.8 0.025 8.6E-07 53.9 2.6 24 157-180 11-34 (204)
314 3tr0_A Guanylate kinase, GMP k 93.8 0.03 1E-06 53.3 3.2 23 158-180 7-29 (205)
315 3jvv_A Twitching mobility prot 93.8 0.053 1.8E-06 56.3 5.2 111 154-277 119-231 (356)
316 3a00_A Guanylate kinase, GMP k 93.8 0.025 8.6E-07 52.9 2.5 22 159-180 2-23 (186)
317 2jaq_A Deoxyguanosine kinase; 93.8 0.03 1E-06 53.2 3.1 21 160-180 2-22 (205)
318 1g41_A Heat shock protein HSLU 93.8 0.036 1.2E-06 59.0 3.9 44 137-180 15-72 (444)
319 1via_A Shikimate kinase; struc 93.8 0.025 8.6E-07 52.3 2.4 21 160-180 6-26 (175)
320 1uf9_A TT1252 protein; P-loop, 93.8 0.036 1.2E-06 52.5 3.6 25 156-180 6-30 (203)
321 2qt1_A Nicotinamide riboside k 93.7 0.038 1.3E-06 52.7 3.8 23 158-180 21-43 (207)
322 1ukz_A Uridylate kinase; trans 93.7 0.039 1.3E-06 52.4 3.8 24 157-180 14-37 (203)
323 1y63_A LMAJ004144AAA protein; 93.7 0.031 1.1E-06 52.2 3.0 23 158-180 10-32 (184)
324 1tev_A UMP-CMP kinase; ploop, 93.7 0.035 1.2E-06 52.2 3.4 23 158-180 3-25 (196)
325 1uj2_A Uridine-cytidine kinase 93.7 0.037 1.3E-06 54.7 3.6 25 156-180 20-44 (252)
326 2j41_A Guanylate kinase; GMP, 93.7 0.036 1.2E-06 52.8 3.4 23 158-180 6-28 (207)
327 3asz_A Uridine kinase; cytidin 93.6 0.039 1.3E-06 52.8 3.6 24 157-180 5-28 (211)
328 1ye8_A Protein THEP1, hypothet 93.6 0.036 1.2E-06 51.4 3.2 22 160-181 2-23 (178)
329 2iyv_A Shikimate kinase, SK; t 93.6 0.026 8.9E-07 52.7 2.2 22 159-180 3-24 (184)
330 2if2_A Dephospho-COA kinase; a 93.6 0.034 1.2E-06 52.9 3.0 22 159-180 2-23 (204)
331 1gvn_B Zeta; postsegregational 93.6 0.057 2E-06 54.4 4.8 23 158-180 33-55 (287)
332 1jjv_A Dephospho-COA kinase; P 93.5 0.04 1.4E-06 52.5 3.5 22 159-180 3-24 (206)
333 2c95_A Adenylate kinase 1; tra 93.5 0.037 1.3E-06 52.1 3.2 24 157-180 8-31 (196)
334 3bgw_A DNAB-like replicative h 93.5 0.15 5.2E-06 54.7 8.3 68 141-213 179-247 (444)
335 3cm0_A Adenylate kinase; ATP-b 93.5 0.04 1.4E-06 51.4 3.3 23 158-180 4-26 (186)
336 3a4m_A L-seryl-tRNA(SEC) kinas 93.5 0.041 1.4E-06 54.7 3.6 23 158-180 4-26 (260)
337 1cke_A CK, MSSA, protein (cyti 93.5 0.036 1.2E-06 53.7 3.1 22 159-180 6-27 (227)
338 1xjc_A MOBB protein homolog; s 93.5 0.039 1.3E-06 50.3 3.1 24 157-180 3-26 (169)
339 3fwy_A Light-independent proto 93.5 0.042 1.4E-06 56.1 3.7 41 155-198 45-85 (314)
340 3ney_A 55 kDa erythrocyte memb 93.5 0.037 1.3E-06 51.9 3.0 24 157-180 18-41 (197)
341 1lvg_A Guanylate kinase, GMP k 93.4 0.031 1.1E-06 52.9 2.5 23 158-180 4-26 (198)
342 1e6c_A Shikimate kinase; phosp 93.4 0.031 1.1E-06 51.4 2.4 22 159-180 3-24 (173)
343 2bwj_A Adenylate kinase 5; pho 93.4 0.037 1.3E-06 52.3 3.0 23 158-180 12-34 (199)
344 2plr_A DTMP kinase, probable t 93.4 0.042 1.4E-06 52.5 3.3 23 158-180 4-26 (213)
345 1ls1_A Signal recognition part 93.3 0.078 2.7E-06 53.6 5.4 38 157-197 97-134 (295)
346 2pt5_A Shikimate kinase, SK; a 93.3 0.042 1.4E-06 50.3 3.1 21 160-180 2-22 (168)
347 2j37_W Signal recognition part 93.3 0.15 5.1E-06 55.4 7.9 24 157-180 100-123 (504)
348 1tue_A Replication protein E1; 93.3 0.053 1.8E-06 50.8 3.7 36 145-180 44-80 (212)
349 1qf9_A UMP/CMP kinase, protein 93.3 0.044 1.5E-06 51.4 3.3 23 158-180 6-28 (194)
350 4a74_A DNA repair and recombin 93.3 0.13 4.3E-06 49.8 6.7 45 158-202 25-72 (231)
351 3l0o_A Transcription terminati 93.2 0.02 6.8E-07 59.0 0.8 51 148-200 164-216 (427)
352 2grj_A Dephospho-COA kinase; T 93.2 0.045 1.5E-06 51.4 3.2 23 158-180 12-34 (192)
353 2bbw_A Adenylate kinase 4, AK4 93.2 0.045 1.5E-06 53.9 3.3 24 157-180 26-49 (246)
354 2q6t_A DNAB replication FORK h 93.2 0.24 8.1E-06 53.5 9.3 68 142-213 183-251 (444)
355 3aez_A Pantothenate kinase; tr 93.2 0.051 1.7E-06 55.4 3.8 24 157-180 89-112 (312)
356 4a1f_A DNAB helicase, replicat 93.2 0.39 1.3E-05 49.2 10.3 52 158-214 46-97 (338)
357 2cdn_A Adenylate kinase; phosp 93.2 0.044 1.5E-06 51.9 3.1 23 158-180 20-42 (201)
358 3tlx_A Adenylate kinase 2; str 93.2 0.069 2.4E-06 52.4 4.6 25 156-180 27-51 (243)
359 2pbr_A DTMP kinase, thymidylat 93.1 0.046 1.6E-06 51.4 3.1 21 160-180 2-22 (195)
360 1znw_A Guanylate kinase, GMP k 93.1 0.046 1.6E-06 52.1 3.1 24 157-180 19-42 (207)
361 2r6a_A DNAB helicase, replicat 93.0 0.2 6.7E-06 54.2 8.4 50 158-211 203-252 (454)
362 2vli_A Antibiotic resistance p 93.0 0.035 1.2E-06 51.6 2.2 23 158-180 5-27 (183)
363 3cmu_A Protein RECA, recombina 93.0 0.096 3.3E-06 65.7 6.4 85 157-251 1426-1515(2050)
364 1pgv_A TMD-1, tropomodulin TMD 93.0 0.1 3.5E-06 48.8 5.2 87 664-750 36-136 (197)
365 1aky_A Adenylate kinase; ATP:A 93.0 0.05 1.7E-06 52.4 3.2 23 158-180 4-26 (220)
366 1htw_A HI0065; nucleotide-bind 92.9 0.061 2.1E-06 48.6 3.4 25 156-180 31-55 (158)
367 1q57_A DNA primase/helicase; d 92.8 0.28 9.4E-06 53.9 9.4 53 158-214 242-294 (503)
368 2jeo_A Uridine-cytidine kinase 92.8 0.064 2.2E-06 52.7 3.8 24 157-180 24-47 (245)
369 1z6g_A Guanylate kinase; struc 92.8 0.044 1.5E-06 52.8 2.5 23 158-180 23-45 (218)
370 2wwf_A Thymidilate kinase, put 92.8 0.054 1.8E-06 51.8 3.2 23 158-180 10-32 (212)
371 1nn5_A Similar to deoxythymidy 92.7 0.058 2E-06 51.6 3.3 23 158-180 9-31 (215)
372 2ewv_A Twitching motility prot 92.7 0.16 5.6E-06 53.1 7.0 108 156-276 134-243 (372)
373 2z0h_A DTMP kinase, thymidylat 92.7 0.057 1.9E-06 50.9 3.2 21 160-180 2-22 (197)
374 3rfe_A Platelet glycoprotein I 92.7 0.2 7E-06 43.4 6.4 55 649-705 12-67 (130)
375 4e22_A Cytidylate kinase; P-lo 92.7 0.057 2E-06 53.3 3.2 24 157-180 26-49 (252)
376 1s96_A Guanylate kinase, GMP k 92.7 0.057 2E-06 51.9 3.1 24 157-180 15-38 (219)
377 3rfe_A Platelet glycoprotein I 92.6 0.18 6.1E-06 43.8 6.0 55 625-681 12-67 (130)
378 2pez_A Bifunctional 3'-phospho 92.6 0.065 2.2E-06 49.6 3.3 23 158-180 5-27 (179)
379 3fb4_A Adenylate kinase; psych 92.6 0.059 2E-06 51.7 3.2 21 160-180 2-22 (216)
380 3end_A Light-independent proto 92.6 0.11 3.8E-06 52.9 5.4 42 155-199 38-79 (307)
381 1zd8_A GTP:AMP phosphotransfer 92.5 0.059 2E-06 52.3 3.0 23 158-180 7-29 (227)
382 2p5t_B PEZT; postsegregational 92.5 0.069 2.3E-06 52.8 3.5 23 158-180 32-54 (253)
383 3tqc_A Pantothenate kinase; bi 92.5 0.074 2.5E-06 54.2 3.8 24 157-180 91-114 (321)
384 2v54_A DTMP kinase, thymidylat 92.5 0.061 2.1E-06 51.0 3.0 23 158-180 4-26 (204)
385 3dl0_A Adenylate kinase; phosp 92.4 0.064 2.2E-06 51.5 3.2 21 160-180 2-22 (216)
386 1m7g_A Adenylylsulfate kinase; 92.4 0.097 3.3E-06 50.0 4.4 26 155-180 22-47 (211)
387 2f6r_A COA synthase, bifunctio 92.4 0.074 2.5E-06 53.4 3.6 24 157-180 74-97 (281)
388 1zak_A Adenylate kinase; ATP:A 92.4 0.058 2E-06 52.1 2.7 23 158-180 5-27 (222)
389 1cr0_A DNA primase/helicase; R 92.3 0.17 5.8E-06 51.2 6.4 53 157-213 34-86 (296)
390 1rj9_A FTSY, signal recognitio 92.3 0.068 2.3E-06 54.2 3.3 24 157-180 101-124 (304)
391 1vht_A Dephospho-COA kinase; s 92.3 0.081 2.8E-06 50.8 3.7 23 158-180 4-26 (218)
392 3a8t_A Adenylate isopentenyltr 92.3 0.073 2.5E-06 54.2 3.4 23 158-180 40-62 (339)
393 1gtv_A TMK, thymidylate kinase 92.2 0.034 1.2E-06 53.3 0.9 21 160-180 2-22 (214)
394 3nwj_A ATSK2; P loop, shikimat 92.2 0.058 2E-06 53.0 2.4 23 158-180 48-70 (250)
395 3d3q_A TRNA delta(2)-isopenten 92.1 0.077 2.6E-06 54.3 3.4 22 159-180 8-29 (340)
396 4eaq_A DTMP kinase, thymidylat 92.0 0.13 4.4E-06 49.9 4.8 24 157-180 25-48 (229)
397 2i3b_A HCR-ntpase, human cance 91.9 0.07 2.4E-06 49.9 2.6 22 159-180 2-23 (189)
398 3ake_A Cytidylate kinase; CMP 91.9 0.08 2.7E-06 50.3 3.2 21 160-180 4-24 (208)
399 1np6_A Molybdopterin-guanine d 91.9 0.083 2.9E-06 48.6 3.1 23 158-180 6-28 (174)
400 2f1r_A Molybdopterin-guanine d 91.9 0.046 1.6E-06 50.2 1.3 22 159-180 3-24 (171)
401 3tif_A Uncharacterized ABC tra 91.8 0.085 2.9E-06 51.4 3.2 23 158-180 31-53 (235)
402 3k1j_A LON protease, ATP-depen 91.8 0.099 3.4E-06 58.9 4.2 42 137-180 41-82 (604)
403 2ehv_A Hypothetical protein PH 91.8 0.083 2.8E-06 51.9 3.2 23 158-180 30-52 (251)
404 3lnc_A Guanylate kinase, GMP k 91.8 0.056 1.9E-06 52.6 1.9 23 158-180 27-50 (231)
405 1sq5_A Pantothenate kinase; P- 91.8 0.097 3.3E-06 53.4 3.7 25 156-180 78-102 (308)
406 2pcj_A ABC transporter, lipopr 91.8 0.085 2.9E-06 50.9 3.1 23 158-180 30-52 (224)
407 4gzl_A RAS-related C3 botulinu 91.7 0.11 3.8E-06 49.2 3.9 40 142-181 14-53 (204)
408 3r20_A Cytidylate kinase; stru 91.6 0.091 3.1E-06 50.8 3.1 23 158-180 9-31 (233)
409 3crm_A TRNA delta(2)-isopenten 91.6 0.095 3.3E-06 53.2 3.3 23 158-180 5-27 (323)
410 1e4v_A Adenylate kinase; trans 91.6 0.09 3.1E-06 50.4 3.1 21 160-180 2-22 (214)
411 2xb4_A Adenylate kinase; ATP-b 91.6 0.092 3.1E-06 50.7 3.1 21 160-180 2-22 (223)
412 3b85_A Phosphate starvation-in 91.5 0.082 2.8E-06 50.3 2.7 23 158-180 22-44 (208)
413 3be4_A Adenylate kinase; malar 91.5 0.091 3.1E-06 50.5 3.0 22 159-180 6-27 (217)
414 3b9q_A Chloroplast SRP recepto 91.5 0.11 3.7E-06 52.7 3.7 24 157-180 99-122 (302)
415 3exa_A TRNA delta(2)-isopenten 91.5 0.1 3.4E-06 52.5 3.3 23 158-180 3-25 (322)
416 2onk_A Molybdate/tungstate ABC 91.5 0.098 3.4E-06 51.0 3.2 22 159-180 25-46 (240)
417 2cbz_A Multidrug resistance-as 91.4 0.1 3.5E-06 50.9 3.2 23 158-180 31-53 (237)
418 1zu4_A FTSY; GTPase, signal re 91.3 0.15 5.2E-06 52.1 4.6 38 157-197 104-141 (320)
419 2wji_A Ferrous iron transport 91.3 0.13 4.5E-06 46.7 3.8 23 159-181 4-26 (165)
420 3io3_A DEHA2D07832P; chaperone 91.3 0.17 5.9E-06 52.3 5.0 46 153-200 13-59 (348)
421 3sr0_A Adenylate kinase; phosp 91.3 0.11 3.6E-06 49.4 3.2 21 160-180 2-22 (206)
422 3gfo_A Cobalt import ATP-bindi 91.3 0.1 3.5E-06 52.0 3.2 23 158-180 34-56 (275)
423 2eyu_A Twitching motility prot 91.2 0.14 4.6E-06 50.8 4.0 25 156-180 23-47 (261)
424 1b0u_A Histidine permease; ABC 91.2 0.1 3.6E-06 51.6 3.2 24 157-180 31-54 (262)
425 3p32_A Probable GTPase RV1496/ 91.2 0.16 5.6E-06 52.9 4.8 35 146-180 65-101 (355)
426 1a7j_A Phosphoribulokinase; tr 91.2 0.064 2.2E-06 54.1 1.5 24 157-180 4-27 (290)
427 2dr3_A UPF0273 protein PH0284; 91.1 0.14 4.9E-06 50.0 4.1 47 158-209 23-69 (247)
428 1ak2_A Adenylate kinase isoenz 91.1 0.11 3.7E-06 50.6 3.1 23 158-180 16-38 (233)
429 2zej_A Dardarin, leucine-rich 91.1 0.11 3.7E-06 48.3 3.0 21 160-180 4-24 (184)
430 1mv5_A LMRA, multidrug resista 91.1 0.12 4.1E-06 50.6 3.4 24 157-180 27-50 (243)
431 2qmh_A HPR kinase/phosphorylas 91.1 0.13 4.3E-06 48.0 3.3 23 158-180 34-56 (205)
432 3v9p_A DTMP kinase, thymidylat 91.1 0.18 6.1E-06 48.6 4.5 23 158-180 25-47 (227)
433 4g1u_C Hemin import ATP-bindin 91.1 0.11 3.8E-06 51.5 3.2 23 158-180 37-59 (266)
434 1ji0_A ABC transporter; ATP bi 91.0 0.12 3.9E-06 50.6 3.2 23 158-180 32-54 (240)
435 2ck3_A ATP synthase subunit al 91.0 0.26 8.8E-06 52.9 6.0 101 149-250 152-271 (510)
436 3foz_A TRNA delta(2)-isopenten 91.0 0.12 4.2E-06 51.8 3.4 23 158-180 10-32 (316)
437 1sgw_A Putative ABC transporte 91.0 0.099 3.4E-06 50.0 2.6 23 158-180 35-57 (214)
438 2olj_A Amino acid ABC transpor 91.0 0.12 4E-06 51.3 3.2 24 157-180 49-72 (263)
439 1ltq_A Polynucleotide kinase; 91.0 0.12 4E-06 52.6 3.3 22 159-180 3-24 (301)
440 1g6h_A High-affinity branched- 91.0 0.12 4E-06 51.2 3.2 23 158-180 33-55 (257)
441 2ff7_A Alpha-hemolysin translo 90.9 0.12 4.1E-06 50.7 3.2 23 158-180 35-57 (247)
442 1oix_A RAS-related protein RAB 90.9 0.12 4E-06 48.5 3.0 24 158-181 29-52 (191)
443 2pze_A Cystic fibrosis transme 90.9 0.12 4.2E-06 50.0 3.2 23 158-180 34-56 (229)
444 3e70_C DPA, signal recognition 90.9 0.14 4.7E-06 52.5 3.7 25 156-180 127-151 (328)
445 2d2e_A SUFC protein; ABC-ATPas 90.8 0.12 4.2E-06 50.7 3.2 23 158-180 29-51 (250)
446 2qe7_A ATP synthase subunit al 90.8 0.34 1.2E-05 51.9 6.7 97 149-250 152-263 (502)
447 1vpl_A ABC transporter, ATP-bi 90.8 0.12 4.3E-06 50.8 3.2 24 157-180 40-63 (256)
448 4hlc_A DTMP kinase, thymidylat 90.7 0.29 1E-05 46.3 5.6 50 159-212 3-52 (205)
449 2j9r_A Thymidine kinase; TK1, 90.7 0.35 1.2E-05 45.7 6.0 110 158-277 28-138 (214)
450 2ghi_A Transport protein; mult 90.6 0.13 4.5E-06 50.9 3.2 24 157-180 45-68 (260)
451 3vr4_D V-type sodium ATPase su 90.6 0.15 5E-06 54.0 3.7 94 158-251 151-258 (465)
452 2zu0_C Probable ATP-dependent 90.6 0.13 4.5E-06 51.1 3.2 23 158-180 46-68 (267)
453 1p9r_A General secretion pathw 90.6 0.37 1.3E-05 51.1 6.9 41 140-180 149-189 (418)
454 3gqb_B V-type ATP synthase bet 90.6 0.13 4.5E-06 54.3 3.3 94 158-251 147-261 (464)
455 2ixe_A Antigen peptide transpo 90.6 0.13 4.5E-06 51.2 3.2 24 157-180 44-67 (271)
456 2og2_A Putative signal recogni 90.5 0.15 5.1E-06 52.8 3.7 23 158-180 157-179 (359)
457 2qi9_C Vitamin B12 import ATP- 90.5 0.14 4.6E-06 50.3 3.2 23 158-180 26-48 (249)
458 3zvl_A Bifunctional polynucleo 90.5 0.13 4.6E-06 54.8 3.4 25 156-180 256-280 (416)
459 3f9v_A Minichromosome maintena 90.5 0.076 2.6E-06 59.5 1.5 44 137-180 295-349 (595)
460 2r9v_A ATP synthase subunit al 90.4 0.33 1.1E-05 52.0 6.2 97 149-250 165-276 (515)
461 2f9l_A RAB11B, member RAS onco 90.4 0.13 4.5E-06 48.4 2.9 23 159-181 6-28 (199)
462 2yz2_A Putative ABC transporte 90.4 0.14 4.8E-06 50.8 3.2 23 158-180 33-55 (266)
463 2vp4_A Deoxynucleoside kinase; 90.3 0.14 4.9E-06 49.6 3.2 24 157-180 19-42 (230)
464 1yrb_A ATP(GTP)binding protein 90.3 0.16 5.5E-06 50.2 3.7 23 158-180 14-36 (262)
465 2ihy_A ABC transporter, ATP-bi 90.3 0.14 4.9E-06 51.1 3.2 23 158-180 47-69 (279)
466 2nq2_C Hypothetical ABC transp 90.3 0.14 4.9E-06 50.3 3.1 23 158-180 31-53 (253)
467 2dyk_A GTP-binding protein; GT 90.3 0.17 5.7E-06 45.5 3.4 23 159-181 2-24 (161)
468 2ged_A SR-beta, signal recogni 90.2 0.25 8.6E-06 46.0 4.7 24 158-181 48-71 (193)
469 2v9p_A Replication protein E1; 90.2 0.15 5E-06 51.5 3.2 24 157-180 125-148 (305)
470 2afh_E Nitrogenase iron protei 90.2 0.25 8.6E-06 49.7 5.0 39 158-199 2-40 (289)
471 3upu_A ATP-dependent DNA helic 90.1 0.38 1.3E-05 52.0 6.7 22 159-180 46-67 (459)
472 2wjg_A FEOB, ferrous iron tran 90.1 0.19 6.4E-06 46.7 3.7 23 159-181 8-30 (188)
473 3oaa_A ATP synthase subunit al 90.1 0.42 1.4E-05 51.1 6.6 98 149-251 152-264 (513)
474 2fz4_A DNA repair protein RAD2 90.0 0.59 2E-05 45.4 7.3 36 142-180 95-130 (237)
475 3cmu_A Protein RECA, recombina 90.0 0.47 1.6E-05 59.7 8.0 99 143-251 365-471 (2050)
476 2iw3_A Elongation factor 3A; a 90.0 0.83 2.8E-05 53.6 9.6 114 158-277 461-605 (986)
477 4edh_A DTMP kinase, thymidylat 90.0 0.43 1.5E-05 45.5 6.1 23 158-180 6-28 (213)
478 1cp2_A CP2, nitrogenase iron p 90.0 0.28 9.5E-06 48.8 5.1 38 159-199 2-39 (269)
479 1tq4_A IIGP1, interferon-induc 89.9 0.22 7.6E-06 52.6 4.4 33 148-180 57-91 (413)
480 1nlf_A Regulatory protein REPA 89.8 0.15 5E-06 51.2 2.9 23 158-180 30-52 (279)
481 1q3t_A Cytidylate kinase; nucl 89.8 0.18 6E-06 49.1 3.4 24 157-180 15-38 (236)
482 2yhs_A FTSY, cell division pro 89.8 0.19 6.4E-06 54.1 3.8 23 158-180 293-315 (503)
483 2ocp_A DGK, deoxyguanosine kin 89.8 0.18 6.3E-06 49.2 3.5 23 158-180 2-24 (241)
484 1u0j_A DNA replication protein 89.7 0.28 9.6E-06 48.1 4.7 23 158-180 104-126 (267)
485 3iqw_A Tail-anchored protein t 89.7 0.36 1.2E-05 49.5 5.7 47 152-201 10-56 (334)
486 1g8f_A Sulfate adenylyltransfe 89.7 0.25 8.5E-06 53.7 4.6 41 140-180 375-417 (511)
487 1svm_A Large T antigen; AAA+ f 89.7 0.18 6E-06 52.8 3.3 24 157-180 168-191 (377)
488 3cmw_A Protein RECA, recombina 89.6 0.41 1.4E-05 59.4 7.0 83 158-250 1431-1518(1706)
489 2zts_A Putative uncharacterize 89.6 0.21 7.1E-06 48.9 3.7 49 158-210 30-78 (251)
490 2c61_A A-type ATP synthase non 89.6 0.21 7.1E-06 53.2 3.8 65 149-213 142-209 (469)
491 2lkc_A Translation initiation 89.6 0.26 8.8E-06 45.2 4.2 25 157-181 7-31 (178)
492 3sop_A Neuronal-specific septi 89.5 0.17 5.9E-06 50.3 3.1 21 160-180 4-24 (270)
493 2pjz_A Hypothetical protein ST 89.5 0.18 6.3E-06 49.8 3.2 23 158-180 30-52 (263)
494 2ce2_X GTPase HRAS; signaling 89.5 0.17 5.9E-06 45.5 2.8 22 160-181 5-26 (166)
495 2nzj_A GTP-binding protein REM 89.4 0.18 6.2E-06 46.0 3.0 24 158-181 4-27 (175)
496 1z2a_A RAS-related protein RAB 89.4 0.18 6.2E-06 45.6 2.9 23 159-181 6-28 (168)
497 3eph_A TRNA isopentenyltransfe 89.4 0.19 6.3E-06 52.6 3.2 22 159-180 3-24 (409)
498 3hjn_A DTMP kinase, thymidylat 89.2 0.44 1.5E-05 44.7 5.5 50 160-212 2-51 (197)
499 1zj6_A ADP-ribosylation factor 89.2 0.37 1.3E-05 44.6 5.0 34 147-181 6-39 (187)
500 1fx0_A ATP synthase alpha chai 89.2 0.39 1.3E-05 51.4 5.6 88 158-250 163-264 (507)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.8e-46 Score=421.49 Aligned_cols=311 Identities=14% Similarity=0.100 Sum_probs=236.8
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHhC---CcEEEEEEcCCCCcHHHHHHHHhc--ccccccccCCceEEEEeCCCC--CHH
Q 003950 132 APDPPPVTPGLDVPLQELKLELFKD---GRQVIVVSAPGGYGKTTLVKKLCK--DDQVLGKFKDNIFFVTVSQTP--NVK 204 (784)
Q Consensus 132 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~vv~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~~wv~~~~~~--~~~ 204 (784)
.|..+.. |||+.++++|.++|..+ +.++|+|+||||+||||||+++|+ +.+++.+|+. ++|+++++.. +..
T Consensus 124 ~p~~~~~-~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~-~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 124 VPKQMTC-YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDS-IVWLKDSGTAPKSTF 201 (549)
T ss_dssp CBCCCCS-CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSE-EEEEECCCCSTTHHH
T ss_pred CCCCCcc-CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCc-EEEEEECCCCCCCHH
Confidence 3444433 59999999999999843 579999999999999999999998 6789999987 7899999885 789
Q ss_pred HHHHHHHHHcCCCCC--CCCC-----hHHHHHHHHHHhcccCCC-cEEEEEeCCCCCchHHHhhhhccCCCceEEEeccc
Q 003950 205 GIVQKVYQHKGYAVP--EFQT-----DEDAINDLERLLKPIRPE-AILLVLDDVWSGSESLLQKFKFQLPYYKILVTSRS 276 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~--~~~~-----~~~~~~~l~~~~~~l~~k-r~LlVlDdv~~~~~~~~~~~~~~~~gs~iivTtR~ 276 (784)
.++..|+.+++.... ...+ .......+. +.++++ ||||||||||+.... .+. ..+||+||||||+
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~~L~~~kr~LlVLDdv~~~~~~---~~~-~~~gs~ilvTTR~ 274 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMIC---NALIDRPNTLFVFDDVVQEETI---RWA-QELRLRCLVTTRD 274 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHH---HHHTTSTTEEEEEEEECCHHHH---HHH-HHTTCEEEEEESB
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHH---HHHcCCCcEEEEEECCCCchhh---ccc-ccCCCEEEEEcCC
Confidence 999999999986522 1111 112233333 445786 999999999996543 222 2389999999999
Q ss_pred cccc--CC---CceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCCChHHHHHHH
Q 003950 277 VFPQ--FG---SGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRV 351 (784)
Q Consensus 277 ~~~~--~~---~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~~~~~w~~~l 351 (784)
..+. .+ .+|+|++|+.++||+||.+++|.... ++.+++++++|+++|+|+||||+++|+.|+.+.. +|...+
T Consensus 275 ~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l 351 (549)
T 2a5y_B 275 VEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQL 351 (549)
T ss_dssp GGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHH
T ss_pred HHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHh
Confidence 7432 22 36999999999999999999986542 3456889999999999999999999999987742 333333
Q ss_pred HhhcccCcccCChHHHHHHHHHHHHhccHHHHHHHh-----------hcCCCCCCcccChHHHHHHHHHh--hccChH--
Q 003950 352 KEWTQDVSVFHSNKEILSCLERSLDALNNEVKECYM-----------DLCSFPEDQRIPITALVDMWMEL--YELVDE-- 416 (784)
Q Consensus 352 ~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~a~fp~~~~i~~~~Li~~W~a~--~~~~~~-- 416 (784)
....... ....+.+++.+||+.||+++|.||+ |||+||+++.|+ +++|+|+ |++.+.
T Consensus 352 ~~~l~~~----~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~ 423 (549)
T 2a5y_B 352 NNKLESR----GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEE 423 (549)
T ss_dssp HHHHHHH----CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------
T ss_pred HHHhhcc----cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCC
Confidence 3221110 1235677888999999999999999 999999999998 8899999 777531
Q ss_pred ----HHHHHHHHhhchhhhhhhhhhcccCCCCCCCCcchhhhhHHHHHHHHHhhccCCc
Q 003950 417 ----LFAIANLHELSNLNLANCVATRKYASDDSCYNDHFVMQHDLLRELAIYQSTLEPI 471 (784)
Q Consensus 417 ----~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~~ 471 (784)
+.+.+||++|+++||++++.. +...+|+|||++|+||++++.++++
T Consensus 424 ~~~~~~~~~~l~~L~~rsLl~~~~~---------~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 424 EQLDDEVADRLKRLSKRGALLSGKR---------MPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCCTHHHHHHHHHTTTBSSCSEEEC---------SSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCHHHHHHHHHHHHHcCCeeEecC---------CCceEEEeChHHHHHHHHHHHHHHH
Confidence 233449999999999987432 1346799999999999999887765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6e-40 Score=372.82 Aligned_cols=285 Identities=18% Similarity=0.241 Sum_probs=225.9
Q ss_pred CCCCCCCCchhHHHHHHHHh-CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFK-DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
.+..|||+.++++|.++|.. ++.++|+|+||||+||||||+++|++.+++.+|+.+++|+++++.++...++..|++.+
T Consensus 127 tk~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34569999999999999985 56899999999999999999999988789999998899999999999888888877754
Q ss_pred CCCC---C-CC---CC----hHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhhccCCCceEEEeccccccc---
Q 003950 215 GYAV---P-EF---QT----DEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQLPYYKILVTSRSVFPQ--- 280 (784)
Q Consensus 215 ~~~~---~-~~---~~----~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~iivTtR~~~~~--- 280 (784)
+... . .. .. .+.....++..++.+.+||+||||||||+.. .+..+. +||+||||||+....
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~e--qLe~f~---pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--AWNAFN---LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHH--HHHHHH---SSCCEEEECSCSHHHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHH--HHHhhC---CCeEEEEeccChHHHHhc
Confidence 2211 0 00 01 1223344555544557999999999999843 344553 899999999998432
Q ss_pred -CCCceecc------CCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCC--ChHHHHHHH
Q 003950 281 -FGSGYDLK------PLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGK--HPAIWQKRV 351 (784)
Q Consensus 281 -~~~~~~l~------~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~--~~~~w~~~l 351 (784)
....|.++ +|+.+|||+||++.. +.. ..++..+| |+|+||||+++|+.|+++ +.++|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-
Confidence 12367777 999999999999883 221 23344444 999999999999999877 57888742
Q ss_pred HhhcccCcccCChHHHHHHHHHHHHhccHHH-HHHHhhcCCCCCCcccChHHHHHHHHHhhccChHHHHHHHHHhhchhh
Q 003950 352 KEWTQDVSVFHSNKEILSCLERSLDALNNEV-KECYMDLCSFPEDQRIPITALVDMWMELYELVDELFAIANLHELSNLN 430 (784)
Q Consensus 352 ~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~a~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~~l~~L~~~s 430 (784)
....+..+|.+||+.||++. |+||+|||+||+++.|+.+.++.+|++++ ++ .++.+|++|+++|
T Consensus 351 -----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---ee-dAe~~L~eLvdRS 415 (1221)
T 1vt4_I 351 -----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---KS-DVMVVVNKLHKYS 415 (1221)
T ss_dssp -----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---SH-HHHHHHHHHHTSS
T ss_pred -----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---HH-HHHHHHHHHHhhC
Confidence 23679999999999999999 99999999999999999999999998876 23 6889999999999
Q ss_pred hhhhhhhcccCCCCCCCCcchhhhhHHHHHHH
Q 003950 431 LANCVATRKYASDDSCYNDHFVMQHDLLRELA 462 (784)
Q Consensus 431 li~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a 462 (784)
||+.. +....|+|||++++++
T Consensus 416 LLq~d-----------~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 416 LVEKQ-----------PKESTISIPSIYLELK 436 (1221)
T ss_dssp SSSBC-----------SSSSEEBCCCHHHHHH
T ss_pred CEEEe-----------CCCCEEEehHHHHHHh
Confidence 99851 1235789999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-39 Score=407.30 Aligned_cols=313 Identities=19% Similarity=0.265 Sum_probs=244.6
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhccccc-ccccCCceEEEEeCCCCC--HH
Q 003950 130 CSAPDPPPVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKDDQV-LGKFKDNIFFVTVSQTPN--VK 204 (784)
Q Consensus 130 ~~~~~~~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~~wv~~~~~~~--~~ 204 (784)
...|.++..||||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. ..+|+.+++|+++++..+ ..
T Consensus 117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 117 GGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 4567778889999999999999997 456899999999999999999999996543 667888899999988543 34
Q ss_pred HHHHHHHHHcCCCCCCC----CChHHHHHHHHHHhcccCCC--cEEEEEeCCCCCchHHHhhhhccCCCceEEEeccccc
Q 003950 205 GIVQKVYQHKGYAVPEF----QTDEDAINDLERLLKPIRPE--AILLVLDDVWSGSESLLQKFKFQLPYYKILVTSRSVF 278 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~----~~~~~~~~~l~~~~~~l~~k--r~LlVlDdv~~~~~~~~~~~~~~~~gs~iivTtR~~~ 278 (784)
..+..++..+....... ...+...+.++..+ .++ |+||||||||+.. .+....+||+||||||++.
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~LlvlDd~~~~~-----~~~~~~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM---LRKHPRSLLILDDVWDPW-----VLKAFDNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT---SSSSCSCEEEEESCCCHH-----HHTTTCSSCEEEEEESSTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHH---hccCCCEEEEEecCCCHH-----HHHhhcCCCEEEEEcCCHH
Confidence 44667777776543211 12333444444444 555 9999999999753 2333478999999999984
Q ss_pred cc-----CCCceeccC-CCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCCChHHHHHHHH
Q 003950 279 PQ-----FGSGYDLKP-LNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVK 352 (784)
Q Consensus 279 ~~-----~~~~~~l~~-L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~~~~~w~~~l~ 352 (784)
.. ....+.+++ |+++||++||...++... ..+++++++|+++|+|+||||+++|++|+.++ ..|...++
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~ 343 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLR 343 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHH
Confidence 33 234788886 999999999998884432 34567899999999999999999999998765 46887777
Q ss_pred hhcccCc------ccCChHHHHHHHHHHHHhccHHHHHHHhhcCCCCCCcccChHHHHHHHHHhhccChHHHHHHHHHhh
Q 003950 353 EWTQDVS------VFHSNKEILSCLERSLDALNNEVKECYMDLCSFPEDQRIPITALVDMWMELYELVDELFAIANLHEL 426 (784)
Q Consensus 353 ~~~~~~~------~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~~l~~L 426 (784)
++..... .....+.+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.+++ ..++++|++|
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-----~~~~~~l~~L 418 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET-----EEVEDILQEF 418 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHH
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-----HHHHHHHHHH
Confidence 7654321 1112357999999999999999999999999999999999999999996542 3889999999
Q ss_pred chhhhhhhhhhcccCCCCCCCCcchhhhhHHHHHHHHHhhccC
Q 003950 427 SNLNLANCVATRKYASDDSCYNDHFVMQHDLLRELAIYQSTLE 469 (784)
Q Consensus 427 ~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e 469 (784)
+++||++... .+....|+||+++|++|+..+.++
T Consensus 419 ~~~sl~~~~~---------~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 419 VNKSLLFCNR---------NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHTTSCEEEE---------SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HhccceEEec---------CCCceEEEecHHHHHHHHhhhhHH
Confidence 9999998532 133457999999999999887665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=344.72 Aligned_cols=311 Identities=21% Similarity=0.325 Sum_probs=235.1
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhccccc-ccccCCceEEEEeCCCCCHHHHH
Q 003950 131 SAPDPPPVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKDDQV-LGKFKDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 131 ~~~~~~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~~wv~~~~~~~~~~~~ 207 (784)
..|..+..||||+.++++|.++|. .++.++|+|+||||+||||||.+++++.++ ..+|+.+++|++++.. +...++
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 456677889999999999999998 356899999999999999999999997655 7899877999999876 333444
Q ss_pred HHH---HHHcCCC----CCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhhccCCCceEEEeccccccc
Q 003950 208 QKV---YQHKGYA----VPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQLPYYKILVTSRSVFPQ 280 (784)
Q Consensus 208 ~~i---~~~l~~~----~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~iivTtR~~~~~ 280 (784)
..+ +..++.. .......+.....+...+.. +.+++||||||||+.. .+. ...+|++||||||+....
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~LLVLDdv~~~~--~l~---~l~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR-KHPRSLLILDDVWDSW--VLK---AFDSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH-TCTTCEEEEEEECCHH--HHH---TTCSSCEEEEEESCGGGG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc-CCCCeEEEEeCCCCHH--HHH---HhcCCCeEEEECCCcHHH
Confidence 433 4445421 11122334444555555421 3479999999999742 233 347899999999998532
Q ss_pred ---CCCceec---cCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhhhCCCChHHHHHHHHhh
Q 003950 281 ---FGSGYDL---KPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGSLCGKHPAIWQKRVKEW 354 (784)
Q Consensus 281 ---~~~~~~l---~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~L~~~~~~~w~~~l~~~ 354 (784)
.+..+.+ ++|+.+||++||...++... ....+.+.+|+++|+|+||||+++|+.++.+. ..|...+..+
T Consensus 271 ~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l 345 (591)
T 1z6t_A 271 DSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQL 345 (591)
T ss_dssp TTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HhcCCCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 2345655 48999999999999886421 23456889999999999999999999997664 3688777766
Q ss_pred cccCc------ccCChHHHHHHHHHHHHhccHHHHHHHhhcCCCCCCcccChHHHHHHHHHhhccChHHHHHHHHHhhch
Q 003950 355 TQDVS------VFHSNKEILSCLERSLDALNNEVKECYMDLCSFPEDQRIPITALVDMWMELYELVDELFAIANLHELSN 428 (784)
Q Consensus 355 ~~~~~------~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~~~~~~~~~~~~~l~~L~~ 428 (784)
..... .......+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .+ .+..++++|++
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----~~-~~~~~l~~L~~ 420 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----TE-EVEDILQEFVN 420 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----HH-HHHHHHHHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC----HH-HHHHHHHHHHh
Confidence 53221 112335799999999999999999999999999999999999999999643 22 78899999999
Q ss_pred hhhhhhhhhcccCCCCCCCCcchhhhhHHHHHHHHHhhc
Q 003950 429 LNLANCVATRKYASDDSCYNDHFVMQHDLLRELAIYQST 467 (784)
Q Consensus 429 ~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~ 467 (784)
+|||+... .+....|+||+++|++++....
T Consensus 421 ~~Ll~~~~---------~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 421 KSLLFCDR---------NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp TTSSEEEE---------ETTEEEEECCHHHHHHHHHHTG
T ss_pred CcCeEEec---------CCCccEEEEcHHHHHHHHhhhh
Confidence 99997422 1234579999999999998743
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.1e-22 Score=214.59 Aligned_cols=225 Identities=24% Similarity=0.372 Sum_probs=192.3
Q ss_pred CceEEEEEecCCCCcccChhccCCCCCcEEEeecccc--cCCcCcCccccCCCCCCCEEEecccCCCCc--cccccccCc
Q 003950 521 PEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLKRIRLEHVSLPSL--TTVRMKHLQ 596 (784)
Q Consensus 521 ~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~L~ 596 (784)
+.++.+.|..+... .+|..+.++++|++|++++|.+ +|. .++.+++|++|++++|.+..+ ....+++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~------~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPD------TMQQFAGLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCS------CGGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhH------HHhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence 56777788776654 8899999999999999999865 333 367889999999999999876 456789999
Q ss_pred eeeeeeccccccccCcccc-----ccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCC
Q 003950 597 NVSLVMCNVDQVVQNSTFH-----FSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNL 671 (784)
Q Consensus 597 ~L~l~~~~~~~~~~~~~~~-----~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L 671 (784)
.|++++|+.....+..... .+..+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L 231 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC
Confidence 9999998766554433211 1235899999999999776 88999999999999999998755 578889999999
Q ss_pred CEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCC-CCcChhhhCCCCCCEEeCCCC
Q 003950 672 QMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSM-FELPSSILNLENLEVVKCDEE 750 (784)
Q Consensus 672 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~~ 750 (784)
++|++++|++.+.+|..++.+++|+.|++++|...+.+|..++.+++|++|++++|.+ +.+|..+.+|++|+.+.++.+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9999999999999999999999999999999999999999999999999999999985 589999999999999999866
Q ss_pred chhc
Q 003950 751 TAYQ 754 (784)
Q Consensus 751 ~~~~ 754 (784)
....
T Consensus 312 ~~~~ 315 (328)
T 4fcg_A 312 LQAQ 315 (328)
T ss_dssp GSCC
T ss_pred HHHH
Confidence 4433
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.4e-22 Score=212.43 Aligned_cols=227 Identities=16% Similarity=0.228 Sum_probs=196.1
Q ss_pred cccCCC------CceEEEEEecCCCCc--ccChhccCCCCCcEEEeec-cc---ccCCcCcCccccCCCCCCCEEEeccc
Q 003950 515 WYDMEA------PEVKVVVLNVRTKKY--TLPKFLEKMDKLKVMIVTN-YG---FFPAELSNIQVFGALSNLKRIRLEHV 582 (784)
Q Consensus 515 ~~~~~~------~~l~~l~L~~~~~~~--~~p~~l~~l~~L~~L~l~~-~~---~~~~~~~~l~~l~~l~~L~~L~L~~n 582 (784)
|.++.| ..++.+.|..+.... .+|..+.++++|++|++++ |. .+|.. ++.+++|++|++++|
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~------l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA------IAKLTQLHYLYITHT 111 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG------GGGCTTCSEEEEEEE
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh------HhcCCCCCEEECcCC
Confidence 777766 467778888777766 8999999999999999995 53 34444 578899999999999
Q ss_pred CCCCc---cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCC-CCcEEEccCCCCC
Q 003950 583 SLPSL---TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIV-SIKKLRITNCHKL 658 (784)
Q Consensus 583 ~l~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~-~L~~L~L~~~~~~ 658 (784)
.+++. .+..+++|++|++++|.+....+... ..+++|++|++++|.+.+.+|..++.++ +|++|++++|.+.
T Consensus 112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI----SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG----GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH----hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 99744 35678999999999998875433322 3789999999999999889999999998 9999999999988
Q ss_pred CCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC-CcChhhh
Q 003950 659 SALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSIL 737 (784)
Q Consensus 659 ~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~lp~~l~ 737 (784)
+.+|..++.++ |++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|. +..+++|++|++++|.++ .+|..+.
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 88999999987 99999999998888999999999999999999987766665 888999999999999998 8899999
Q ss_pred CCCCCCEEeCCCCchh
Q 003950 738 NLENLEVVKCDEETAY 753 (784)
Q Consensus 738 ~l~~L~~L~l~~~~~~ 753 (784)
++++|+.|++++|...
T Consensus 266 ~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLC 281 (313)
T ss_dssp GCTTCCEEECCSSEEE
T ss_pred cCcCCCEEECcCCccc
Confidence 9999999999998765
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=5e-21 Score=225.99 Aligned_cols=224 Identities=17% Similarity=0.203 Sum_probs=151.2
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc---cCCcCcCccccCCCCCCCEEEecccCCCCc---cccccc
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF---FPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMK 593 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~---~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~l~ 593 (784)
++.++.+.|..+.....+|..+.++++|++|++++|.+ +|.. +..+++|++|++++|.+.+. ....++
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE------LMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG------GGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH------HcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 34455555554444445555555555666665555432 2222 45566777777777776644 334566
Q ss_pred cCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhc--------
Q 003950 594 HLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGI-------- 665 (784)
Q Consensus 594 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l-------- 665 (784)
+|+.|++.+|.+....+.. ...+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+
T Consensus 491 ~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp TCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred CCCEEEccCCccCCcCChH----HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 7777777777665433322 2256777777777777777777777777777777777776665655433
Q ss_pred --------------------------------------------------------------cCCCCCCEEEeecCCCCC
Q 003950 666 --------------------------------------------------------------GKLVNLQMLTLASCTDLS 683 (784)
Q Consensus 666 --------------------------------------------------------------~~l~~L~~L~L~~~~~~~ 683 (784)
+.+++|++|++++|.+.+
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 234567778888877777
Q ss_pred CCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC-CcChhhhCCCCCCEEeCCCCchh
Q 003950 684 ALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSILNLENLEVVKCDEETAY 753 (784)
Q Consensus 684 ~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~~ 753 (784)
.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.++ .+|..+.++++|+.|++++|...
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 88888888888888888888777788888888888888888888877 77778888888888888877543
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=6.7e-21 Score=224.91 Aligned_cols=237 Identities=17% Similarity=0.217 Sum_probs=201.8
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc---cCCcCcCccccCCCCCCCEEEecccCCCCc---cccccc
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF---FPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMK 593 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~---~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~l~ 593 (784)
++.++.+.+..+.....+|..+.++++|++|++++|.+ +|.. ++.+++|++|++++|.+.+. ....++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS------LGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG------GGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH------HhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 56788888887777778999999999999999999743 4443 57889999999999999865 345678
Q ss_pred cCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCE
Q 003950 594 HLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQM 673 (784)
Q Consensus 594 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 673 (784)
+|+.|++.+|.+....+... ..+++|++|++++|.+.+.+|.+++.+++|++|++++|.+.+.+|..++.+++|++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGL----SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGG----GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred CceEEEecCCcccCcCCHHH----hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 99999999998875544332 37899999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCcccc----------------------------------------------------------------
Q 003950 674 LTLASCTDLSALPDTI---------------------------------------------------------------- 689 (784)
Q Consensus 674 L~L~~~~~~~~~p~~~---------------------------------------------------------------- 689 (784)
|++++|.+.+.+|..+
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 9999998877766543
Q ss_pred ------cCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC-CcChhhhCCCCCCEEeCCCCchhc-HH-HHhh
Q 003950 690 ------GNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSILNLENLEVVKCDEETAYQ-WE-YFQL 760 (784)
Q Consensus 690 ------~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~~~-~~-~~~~ 760 (784)
+.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.++ .+|..++++++|+.|++++|.... .+ .+..
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 33578999999999999999999999999999999999998 899999999999999999997753 22 2333
Q ss_pred cCCCcEE
Q 003950 761 GQAKFRI 767 (784)
Q Consensus 761 ~lp~L~i 767 (784)
++.|+.
T Consensus 703 -l~~L~~ 708 (768)
T 3rgz_A 703 -LTMLTE 708 (768)
T ss_dssp -CCCCSE
T ss_pred -CCCCCE
Confidence 777743
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=8.3e-21 Score=210.73 Aligned_cols=234 Identities=16% Similarity=0.175 Sum_probs=131.9
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCcc----ccccccC
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLT----TVRMKHL 595 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L 595 (784)
+++++.+.|..+......|..|.++++|++|++++|.+....+. -..+..+++|++|++++|.+.... ...+++|
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH-SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC-cccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 45666666666555555566677777777777776543210000 012566777888888887776652 4466777
Q ss_pred ceeeeeeccccccccCccccc------------------------------cccCCceEEEEEeCCCCCCCCCcccC---
Q 003950 596 QNVSLVMCNVDQVVQNSTFHF------------------------------SDAFPNLLEIDIDYCNDLIELPDGLC--- 642 (784)
Q Consensus 596 ~~L~l~~~~~~~~~~~~~~~~------------------------------~~~l~~L~~L~L~~~~~~~~lp~~i~--- 642 (784)
+.|++++|.+....+.....+ ...+++|+.|++++|.+.+..|..+.
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence 777777776655433222111 01234566666666644332221110
Q ss_pred ------------------------------------CCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCc
Q 003950 643 ------------------------------------DIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALP 686 (784)
Q Consensus 643 ------------------------------------~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p 686 (784)
..++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 11355555555555555555556666666666666665555555
Q ss_pred ccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCc-ChhhhCCCCCCEEeCCCCchhc
Q 003950 687 DTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL-PSSILNLENLEVVKCDEETAYQ 754 (784)
Q Consensus 687 ~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~~~ 754 (784)
..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.++.+ |..+..+++|+.|++++|....
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 5666666666666666655444455566666666666666666644 4455666666666666655544
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=2.6e-21 Score=202.79 Aligned_cols=220 Identities=16% Similarity=0.210 Sum_probs=189.9
Q ss_pred CCCceEEEEEec-CCCCcccChhccCCCCCcEEEeecccc---cCCcCcCccccCCCCCCCEEEecccCCCCc---cccc
Q 003950 519 EAPEVKVVVLNV-RTKKYTLPKFLEKMDKLKVMIVTNYGF---FPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVR 591 (784)
Q Consensus 519 ~~~~l~~l~L~~-~~~~~~~p~~l~~l~~L~~L~l~~~~~---~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~ 591 (784)
.++.++.+.|.. +.....+|..|.++++|++|++++|.+ +|.. +..+++|++|++++|.+.+. .+..
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~------~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF------LSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG------GGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH------HhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 467899999985 666678999999999999999999854 3443 57889999999999998854 4567
Q ss_pred cccCceeeeeeccccccccCccccccccCC-ceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCC
Q 003950 592 MKHLQNVSLVMCNVDQVVQNSTFHFSDAFP-NLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVN 670 (784)
Q Consensus 592 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 670 (784)
+++|++|++.+|.+....+... ..++ +|++|++++|.+.+.+|..+..+. |++|++++|.+.+..|..++.+++
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l----~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSY----GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGG----GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred CCCCCeEECcCCcccCcCCHHH----hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence 8999999999998864433322 2566 999999999999889999999987 999999999988889999999999
Q ss_pred CCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC-CcChhhhCCCCCCEEeCCC
Q 003950 671 LQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSILNLENLEVVKCDE 749 (784)
Q Consensus 671 L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~ 749 (784)
|++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..++.+++|+.|++++|.++ .+|.. .++++|+.+++.+
T Consensus 223 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300 (313)
T ss_dssp CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCS
T ss_pred CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcC
Confidence 99999999888766665 888999999999999988899999999999999999999998 67764 8899999999998
Q ss_pred Cc
Q 003950 750 ET 751 (784)
Q Consensus 750 ~~ 751 (784)
|.
T Consensus 301 N~ 302 (313)
T 1ogq_A 301 NK 302 (313)
T ss_dssp SS
T ss_pred CC
Confidence 85
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=3.6e-20 Score=195.30 Aligned_cols=215 Identities=25% Similarity=0.364 Sum_probs=182.0
Q ss_pred CCCCCcEEEeecccc--cCCcCcCccccCCCCCCCEEEecccCCCCc--cccccccCceeeeeeccccccccCccccccc
Q 003950 543 KMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLKRIRLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSD 618 (784)
Q Consensus 543 ~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 618 (784)
...+++.|++++|++ +|.. +..+++|++|++++|.+..+ ....+++|++|++++|.+..+... ..
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~------l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-----l~ 147 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQ------AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-----IA 147 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSC------GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-----GG
T ss_pred cccceeEEEccCCCchhcChh------hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-----Hh
Confidence 468899999999854 4443 56789999999999999876 356889999999999988754322 23
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCC---------CCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccc
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCD---------IVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTI 689 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~---------l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~ 689 (784)
.+++|++|++++|+..+.+|..++. +++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l 225 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh
Confidence 7899999999999999999988765 999999999998755 89999999999999999998776 577789
Q ss_pred cCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCC-CCcChhhhCCCCCCEEeCCCCchh-cHH-HHhhcCCCcE
Q 003950 690 GNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSM-FELPSSILNLENLEVVKCDEETAY-QWE-YFQLGQAKFR 766 (784)
Q Consensus 690 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~~~~~-~~~-~~~~~lp~L~ 766 (784)
+.+++|+.|++++|...+.+|..++.+++|++|++++|.+ ..+|..+.++++|+.|++++|... ..+ .+.+ +|+|+
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~ 304 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANC 304 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTC
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCce
Confidence 9999999999999999999999999999999999999985 489999999999999999987543 233 3444 88887
Q ss_pred Eeeec
Q 003950 767 IEVIQ 771 (784)
Q Consensus 767 i~~~~ 771 (784)
+....
T Consensus 305 ~l~l~ 309 (328)
T 4fcg_A 305 IILVP 309 (328)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 66544
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=200.70 Aligned_cols=136 Identities=18% Similarity=0.158 Sum_probs=70.9
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
.+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|..+....+|++|++++|.+....+..+..+++|+.|
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCee
Confidence 34444444554444444334444555555555555554444444444444455555555544432222345556666666
Q ss_pred eccCCCCCCccchhhhCCCCCCEEeccCCCCCCc-ChhhhCCCCCCEEeCCCCchhc
Q 003950 699 DISECLNIQELPERIGELCSLKTLCLKGCSMFEL-PSSILNLENLEVVKCDEETAYQ 754 (784)
Q Consensus 699 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~~~ 754 (784)
+|++|.+.+..+..+..+++|+.|++++|.++.+ |..+.++++|+.|++++|....
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 6666654444444455666666666666665543 4455566666666666655443
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.6e-19 Score=191.15 Aligned_cols=224 Identities=15% Similarity=0.198 Sum_probs=151.5
Q ss_pred CceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCccccccccCceeee
Q 003950 521 PEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKHLQNVSL 600 (784)
Q Consensus 521 ~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~l 600 (784)
+.++.+.|..+......+..|.++++|++|++++|.+..... ..++.+++|++|++++|.++.+.....++|+.|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP---GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT---TTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH---HHhcCCCCCCEEECCCCcCCccChhhcccccEEEC
Confidence 455556565554444444567788888888887764321100 12567778888888888777665445577888888
Q ss_pred eeccccccccCccccccccCCceEEEEEeCCCCCC--CCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeec
Q 003950 601 VMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLI--ELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLAS 678 (784)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~ 678 (784)
.+|.+..+.... +..+++|++|++++|.+.. ..+..+.++++|++|++++|. +..+|..+. ++|++|++++
T Consensus 129 ~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 129 HENEITKVRKSV----FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDG 201 (330)
T ss_dssp CSSCCCBBCHHH----HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTT
T ss_pred CCCcccccCHhH----hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCC
Confidence 877766543322 2367778888887776643 556667777788888887765 445665443 6777888877
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhc
Q 003950 679 CTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQ 754 (784)
Q Consensus 679 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~ 754 (784)
|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+|..+..+++|+.|++++|....
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCc
Confidence 7766666677777777888888777666555556777777888888888777777777777778888777775544
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=6.5e-20 Score=210.23 Aligned_cols=238 Identities=14% Similarity=0.189 Sum_probs=126.3
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc--cCCcCcCccccCCCCCCCEEEecccCCCCcc---cccccc
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLKRIRLEHVSLPSLT---TVRMKH 594 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~ 594 (784)
++.++.+.|..+......|..|+++++|++|++++|.+ +|..+ |+.+++|++|++++|.+..+. +..+++
T Consensus 98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 172 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-----FHNTPKLTTLSMSNNNLERIEDDTFQATTS 172 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH-----hccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence 44555555555444343444455555555555555432 22221 455556666666666555442 334555
Q ss_pred CceeeeeeccccccccCccccccccCCceEEEEEeCCCCCC------------------CCCcccCCCCCCcEEEccCCC
Q 003950 595 LQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLI------------------ELPDGLCDIVSIKKLRITNCH 656 (784)
Q Consensus 595 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~------------------~lp~~i~~l~~L~~L~L~~~~ 656 (784)
|+.|++++|.+..+... .+++|+.|++++|.+.+ .+|.. ..++|++|+|++|.
T Consensus 173 L~~L~L~~N~l~~~~~~-------~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~ 243 (597)
T 3oja_B 173 LQNLQLSSNRLTHVDLS-------LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNN 243 (597)
T ss_dssp CCEEECTTSCCSBCCGG-------GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSC
T ss_pred CcEEECcCCCCCCcChh-------hhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCC
Confidence 66666665555433211 12222222222221111 00110 11345555555554
Q ss_pred CCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhh
Q 003950 657 KLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSI 736 (784)
Q Consensus 657 ~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l 736 (784)
+.+ +..++.+++|++|+|++|.+.+..|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|.++.+|..+
T Consensus 244 l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 320 (597)
T 3oja_B 244 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQ 320 (597)
T ss_dssp CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGH
T ss_pred CCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCCccCccc
Confidence 433 245666777777777776666666667777777777777776443 35555666777777777777777777667
Q ss_pred hCCCCCCEEeCCCCchhcHHHHhhcCCCc-EEeeeccccCc
Q 003950 737 LNLENLEVVKCDEETAYQWEYFQLGQAKF-RIEVIQEDINL 776 (784)
Q Consensus 737 ~~l~~L~~L~l~~~~~~~~~~~~~~lp~L-~i~~~~~~~~~ 776 (784)
..+++|+.|++++|.....+ +.. +|+| .++...|++.+
T Consensus 321 ~~l~~L~~L~L~~N~l~~~~-~~~-~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIVTLK-LST-HHTLKNLTLSHNDWDC 359 (597)
T ss_dssp HHHTTCSEEECCSSCCCCCC-CCT-TCCCSEEECCSSCEEH
T ss_pred ccCCCCCEEECCCCCCCCcC-hhh-cCCCCEEEeeCCCCCC
Confidence 77777777777766654432 222 5666 34444455443
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=8.3e-20 Score=198.15 Aligned_cols=245 Identities=14% Similarity=0.104 Sum_probs=164.1
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc--cCCcCcCccccCCCCCCCEEEecccCCCCcc---cccccc
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLKRIRLEHVSLPSLT---TVRMKH 594 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~ 594 (784)
+++++.+.|..+......|..|..+++|++|++++|.+ ++.. .++.+++|++|++++|.++.+. +..+++
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-----HhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence 56777777776655444556788888888888888643 2221 2577888888888888887763 356788
Q ss_pred CceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCC------------------------------
Q 003950 595 LQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDI------------------------------ 644 (784)
Q Consensus 595 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l------------------------------ 644 (784)
|++|++++|.+..+.+... ..+++|++|++++|.+.......+.++
T Consensus 143 L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTF----QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218 (390)
T ss_dssp CCEEECCSSCCCBCCTTTT----SSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred CcEEECCCCccCccChhhc----cCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence 8888888887765544322 367888888888886654321111111
Q ss_pred -------CCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCC
Q 003950 645 -------VSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELC 717 (784)
Q Consensus 645 -------~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 717 (784)
++|++|++++|.+.+ . ..++.+++|++|++++|.+.+..|..+..+++|+.|++++|.+ ..+|..+..++
T Consensus 219 ~~~~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~ 295 (390)
T 3o6n_A 219 VVRGPVNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIP 295 (390)
T ss_dssp EEECCCCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEECSSSCCT
T ss_pred eccccccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cccCcccCCCC
Confidence 234555555544332 2 3566777888888888777666677778888888888888754 44566667778
Q ss_pred CCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHHHHhhcCCCc-EEeeeccccCccc
Q 003950 718 SLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEYFQLGQAKF-RIEVIQEDINLYW 778 (784)
Q Consensus 718 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~lp~L-~i~~~~~~~~~~~ 778 (784)
+|++|++++|.++.+|..+..+++|+.|++++|.....+ +.. +++| .++...|++.+.+
T Consensus 296 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~-~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 296 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LST-HHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp TCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC-CCT-TCCCSEEECCSSCEEHHH
T ss_pred CCCEEECCCCcceecCccccccCcCCEEECCCCccceeC-chh-hccCCEEEcCCCCccchh
Confidence 888888888888888777777888888888877765543 333 6677 4555556555443
No 16
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=2.4e-20 Score=207.58 Aligned_cols=229 Identities=12% Similarity=0.025 Sum_probs=188.5
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCccccccccCceee
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKHLQNVS 599 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ 599 (784)
+++++.+.|..+......|..|..+++|++|++++|.+.. ...++.+++|++|+|++|.++++. ..++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~l~~l~~L~~L~Ls~N~l~~l~--~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-----TLDLESLSTLRTLDLNNNYVQELL--VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-----EEECTTCTTCCEEECCSSEEEEEE--ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-----CcccccCCCCCEEEecCCcCCCCC--CCCCcCEEE
Confidence 4567777787776666667899999999999999985421 112688999999999999988775 348999999
Q ss_pred eeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhcc-CCCCCCEEEeec
Q 003950 600 LVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIG-KLVNLQMLTLAS 678 (784)
Q Consensus 600 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~ 678 (784)
+++|.+...... .+++|+.|+|++|.+.+..|..++++++|++|+|++|.+.+..|..+. .+++|++|+|++
T Consensus 106 L~~N~l~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 106 AANNNISRVSCS-------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCSSCCCCEEEC-------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CcCCcCCCCCcc-------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 999988776442 468999999999999888888899999999999999998887888876 799999999999
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchh--cHH
Q 003950 679 CTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAY--QWE 756 (784)
Q Consensus 679 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~--~~~ 756 (784)
|.+.+. |. ...+++|+.|+|++|.+. .+|+.++.+++|+.|++++|.++.+|..+..+++|+.|++++|... ..+
T Consensus 179 N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 179 NFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp SCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred Cccccc-cc-cccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 887654 33 446999999999999665 4666799999999999999999999999999999999999998775 233
Q ss_pred HHhhcCCCc
Q 003950 757 YFQLGQAKF 765 (784)
Q Consensus 757 ~~~~~lp~L 765 (784)
.....+|.|
T Consensus 256 ~~~~~l~~L 264 (487)
T 3oja_A 256 DFFSKNQRV 264 (487)
T ss_dssp HHHTTCHHH
T ss_pred HHHHhCCCC
Confidence 333335544
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=198.69 Aligned_cols=223 Identities=17% Similarity=0.251 Sum_probs=185.0
Q ss_pred CceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCcc---ccccccCce
Q 003950 521 PEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLT---TVRMKHLQN 597 (784)
Q Consensus 521 ~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~ 597 (784)
++++.+.|..+......+..|.++++|++|++++|.+..... ..|.++++|++|+|++|.++.+. +..+++|+.
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI---GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG---GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh---hhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 456667777666656667889999999999999985421111 23788999999999999998873 567889999
Q ss_pred eeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCc-ccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEe
Q 003950 598 VSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPD-GLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTL 676 (784)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 676 (784)
|++++|.+..+..... ..+++|++|++++|+..+.+|. .+.++++|++|++++|. +..+| .+..+++|++|+|
T Consensus 141 L~L~~N~i~~~~~~~~----~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAF----NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDL 214 (440)
T ss_dssp EECCSCCCCEECTTTT----TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEEC
T ss_pred eeCCCCcccccCHHHh----hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEEC
Confidence 9999998876654333 3789999999999877776655 68899999999999986 55677 4889999999999
Q ss_pred ecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcCh-hhhCCCCCCEEeCCCCch
Q 003950 677 ASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPS-SILNLENLEVVKCDEETA 752 (784)
Q Consensus 677 ~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~ 752 (784)
++|.+.+..|..+..+++|+.|++++|.+....|..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|..
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 9998888888999999999999999998888778889999999999999999998875 468899999999998854
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=7.7e-21 Score=219.18 Aligned_cols=234 Identities=15% Similarity=0.198 Sum_probs=155.6
Q ss_pred cCCc---ccCCCC---ceEEEEEecCCCCcccChhccCCCCCcEEEeecccc------cC--------------------
Q 003950 512 SSNW---YDMEAP---EVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF------FP-------------------- 559 (784)
Q Consensus 512 ~~~~---~~~~~~---~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~------~~-------------------- 559 (784)
.+.| .|+.|. .+..+.|..++..+.+|+++++|++|++|++++|.+ +.
T Consensus 66 ~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l 145 (636)
T 4eco_A 66 LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145 (636)
T ss_dssp GGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHH
T ss_pred cccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhH
Confidence 4667 777773 455666666666788999999999999999998743 00
Q ss_pred ----------C-------------------------------------cCcCc-cccCCCCCCCEEEecccCCCC-----
Q 003950 560 ----------A-------------------------------------ELSNI-QVFGALSNLKRIRLEHVSLPS----- 586 (784)
Q Consensus 560 ----------~-------------------------------------~~~~l-~~l~~l~~L~~L~L~~n~l~~----- 586 (784)
. .+..+ ..++++++|++|+|++|.+++
T Consensus 146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~ 225 (636)
T 4eco_A 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICE 225 (636)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred HHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccc
Confidence 0 01011 136677888888888888777
Q ss_pred -------------c--ccc--ccccCceeeeeeccccccccCccccccccCCceEEEEEeCCC-CCC-CCCcccCCC---
Q 003950 587 -------------L--TTV--RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCN-DLI-ELPDGLCDI--- 644 (784)
Q Consensus 587 -------------~--~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~-~lp~~i~~l--- 644 (784)
+ ... .+++|++|++.+|.+....+... ..+++|++|++++|. +.+ .+|..++.+
T Consensus 226 ~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~ 301 (636)
T 4eco_A 226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL----KALPEMQLINVACNRGISGEQLKDDWQALADA 301 (636)
T ss_dssp SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT----TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHS
T ss_pred cccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH----hcCCCCCEEECcCCCCCccccchHHHHhhhcc
Confidence 4 223 67788888888877655443322 267777777777776 555 667666665
Q ss_pred ---CCCcEEEccCCCCCCCCch--hccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCC-
Q 003950 645 ---VSIKKLRITNCHKLSALPE--GIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCS- 718 (784)
Q Consensus 645 ---~~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~- 718 (784)
++|++|++++|.+. .+|. .++++++|++|++++|.+.+.+| .++.+++|+.|++++|.+. .+|..++.+++
T Consensus 302 ~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~ 378 (636)
T 4eco_A 302 PVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQ 378 (636)
T ss_dssp GGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTT
T ss_pred ccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhccc
Confidence 77777777777655 6776 67777777777777776666666 6666677777777776544 66666666666
Q ss_pred CCEEeccCCCCCCcChhhhCCC--CCCEEeCCCCch
Q 003950 719 LKTLCLKGCSMFELPSSILNLE--NLEVVKCDEETA 752 (784)
Q Consensus 719 L~~L~l~~n~l~~lp~~l~~l~--~L~~L~l~~~~~ 752 (784)
|++|++++|.++.+|..+..++ +|+.|++++|..
T Consensus 379 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CcEEEccCCcCcccchhhhhcccCccCEEECcCCcC
Confidence 7777777777666665554433 555555555543
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=2.6e-19 Score=206.28 Aligned_cols=224 Identities=14% Similarity=0.133 Sum_probs=125.8
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc---cCCcCcCccccCCCCCCCEEEecccCCCCc-----cccc
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF---FPAELSNIQVFGALSNLKRIRLEHVSLPSL-----TTVR 591 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~---~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-----~~~~ 591 (784)
++.++.+.+..+......|..+..+++|++|++++|.. +|.. .+..+++|++|++++|.+... ....
T Consensus 300 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG-----CLENLENLRELDLSHDDIETSDCCNLQLRN 374 (606)
T ss_dssp CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS-----TTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh-----hhhccCcCCEEECCCCccccccCcchhccc
Confidence 45566666665554444455666666666666666532 2222 145666667777766666544 2345
Q ss_pred cccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCc-ccCCCCCCcEEEccCCCCCCCCchhccCCCC
Q 003950 592 MKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPD-GLCDIVSIKKLRITNCHKLSALPEGIGKLVN 670 (784)
Q Consensus 592 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 670 (784)
+++|+.|++++|.+....+... ..+++|+.|++++|.+.+..|. .+.++++|++|++++|.+.+..|..++.+++
T Consensus 375 l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKTEAF----KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp CTTCCEEECCSCSCEEECTTTT----TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred CCCCCEEECCCCcCCcCCHHHh----cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 5666666666665544432221 2455666666666655544433 2556666666666666555555555566666
Q ss_pred CCEEEeecCCCCCC---CcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC-CcChhhhCCCCCCEEe
Q 003950 671 LQMLTLASCTDLSA---LPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSILNLENLEVVK 746 (784)
Q Consensus 671 L~~L~L~~~~~~~~---~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~ 746 (784)
|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.++ ..|..+.++++| .|+
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 66666666555431 2234555666666666666555555555666666666666666655 234455566666 666
Q ss_pred CCCCchh
Q 003950 747 CDEETAY 753 (784)
Q Consensus 747 l~~~~~~ 753 (784)
+++|...
T Consensus 530 L~~N~l~ 536 (606)
T 3t6q_A 530 LASNHIS 536 (606)
T ss_dssp CCSSCCC
T ss_pred CcCCccc
Confidence 6555443
No 20
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=2.5e-19 Score=198.29 Aligned_cols=223 Identities=17% Similarity=0.221 Sum_probs=185.7
Q ss_pred CceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCcc---ccccccCce
Q 003950 521 PEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLT---TVRMKHLQN 597 (784)
Q Consensus 521 ~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~ 597 (784)
+.++.+.|..+......|..|.++++|++|++++|.+..... ..|.++++|++|+|++|.++.+. +..+++|+.
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV---GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh---hhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 456677777766666668899999999999999985421111 23688999999999999998773 456889999
Q ss_pred eeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCc-ccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEe
Q 003950 598 VSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPD-GLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTL 676 (784)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 676 (784)
|++++|.+..+..... ..+++|+.|++++|+..+.+|. .+.++++|++|++++|.+ ..+| .+..+++|++|+|
T Consensus 152 L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAF----NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMP-NLTPLVGLEELEM 225 (452)
T ss_dssp EECCSCCCCEECTTTT----TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCC-CCTTCTTCCEEEC
T ss_pred EECCCCCcceeCHhHH----hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccc-cccccccccEEEC
Confidence 9999998876654333 3789999999999877777665 688999999999999875 4566 5889999999999
Q ss_pred ecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChh-hhCCCCCCEEeCCCCch
Q 003950 677 ASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSS-ILNLENLEVVKCDEETA 752 (784)
Q Consensus 677 ~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~~~~ 752 (784)
++|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|..
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 99998888899999999999999999988888888899999999999999999988754 68899999999998853
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=6e-19 Score=182.46 Aligned_cols=208 Identities=17% Similarity=0.181 Sum_probs=168.6
Q ss_pred cccChhccCCCCCcEEEeecccc--cCCcCcCccccCCCCCCCEEEecccCCCCc---cccccccCceeeeeecc-cccc
Q 003950 535 YTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCN-VDQV 608 (784)
Q Consensus 535 ~~~p~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~-~~~~ 608 (784)
..+|..+ .++|++|++++|.+ ++.. .|..+++|++|++++|.++.+ .+..+++|++|++++|. +..+
T Consensus 24 ~~ip~~~--~~~l~~L~l~~n~i~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 24 QAVPVGI--PAASQRIFLHGNRISHVPAA-----SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp SSCCTTC--CTTCSEEECTTSCCCEECTT-----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred ccCCcCC--CCCceEEEeeCCcCCccCHH-----HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence 4455543 46899999988744 2222 267888999999999988766 35567889999999886 5554
Q ss_pred ccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCccc
Q 003950 609 VQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDT 688 (784)
Q Consensus 609 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~ 688 (784)
.+.. +..+++|++|++++|.+.+..|..+.++++|++|++++|.+....+..++.+++|++|++++|.+.+..+..
T Consensus 97 ~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 97 DPAT----FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CTTT----TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CHHH----hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 3332 237899999999999888877888999999999999998866655566899999999999998776555567
Q ss_pred ccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcCh-hhhCCCCCCEEeCCCCchh
Q 003950 689 IGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPS-SILNLENLEVVKCDEETAY 753 (784)
Q Consensus 689 ~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~~ 753 (784)
+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.++.+|. .+..+++|+.|++++|...
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 8999999999999998888878899999999999999999998875 4899999999999988553
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=200.16 Aligned_cols=265 Identities=15% Similarity=0.164 Sum_probs=195.0
Q ss_pred CCccceeEEeecCCCccCCc-ccCCCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc--cCCcCcCccccCCCC
Q 003950 496 HPLNASLLSISTDETFSSNW-YDMEAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALS 572 (784)
Q Consensus 496 ~~~~~r~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~ 572 (784)
.+...+.|.+.......... .-..+++++.+.|..+......|..|.++++|++|++++|.+ +|.. .|..++
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~ 104 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG-----VFTGLS 104 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT-----SSTTCT
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc-----cccCCC
Confidence 34566777776543322111 112467788888877766666678888889999999888743 3322 267788
Q ss_pred CCCEEEecccCCCCc---cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcE
Q 003950 573 NLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKK 649 (784)
Q Consensus 573 ~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 649 (784)
+|++|++++|.+..+ .+..+++|+.|++.+|.+..+.+..+ ..+++|+.|++++|.+.+..+..+.++++|+.
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF----SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS----TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc----cCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 899999998888765 34567888888888887766544332 36788999999988776655567888899999
Q ss_pred EEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCC
Q 003950 650 LRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSM 729 (784)
Q Consensus 650 L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l 729 (784)
|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 99998876666666788889999999999888888887777777899999999866544335788899999999999998
Q ss_pred CCcCh-hhhCCCCCCEEeCCCCchhcH--HHHhhcCCCcEEeee
Q 003950 730 FELPS-SILNLENLEVVKCDEETAYQW--EYFQLGQAKFRIEVI 770 (784)
Q Consensus 730 ~~lp~-~l~~l~~L~~L~l~~~~~~~~--~~~~~~lp~L~i~~~ 770 (784)
+.++. .+.++++|+.|++++|..... ..+.. +++|+....
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L 303 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG-LNYLRVLNV 303 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT-CTTCCEEEC
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcC-cccCCEEEC
Confidence 87664 578899999999998876554 22333 777754333
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=1.5e-19 Score=200.51 Aligned_cols=268 Identities=14% Similarity=0.149 Sum_probs=198.1
Q ss_pred CCccceeEEeecCCCccCCc-ccCCCCceEEEEEecCCCCccc-ChhccCCCCCcEEEeecccccCCcCcCccccCCCCC
Q 003950 496 HPLNASLLSISTDETFSSNW-YDMEAPEVKVVVLNVRTKKYTL-PKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSN 573 (784)
Q Consensus 496 ~~~~~r~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~ 573 (784)
.+...+++.++......... .-..+++++.+.|..+.....+ |..|.++++|++|++++|.+..... ..++.+++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET---GAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT---TTTTTCTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh---hhccCccc
Confidence 34567888877554322111 1124678888888877665455 5678999999999999875421111 12678899
Q ss_pred CCEEEecccCCCCc-----cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCC----
Q 003950 574 LKRIRLEHVSLPSL-----TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDI---- 644 (784)
Q Consensus 574 L~~L~L~~n~l~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l---- 644 (784)
|++|++++|.+++. .+..+++|+.|++++|.+....+.. ++..+++|++|++++|.+.+..|..+..+
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS---FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG---GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc---ccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence 99999999998763 2567889999999999887654432 23478999999999998877766655443
Q ss_pred ------------------------------CCCcEEEccCCCCCCCCchhccC---------------------------
Q 003950 645 ------------------------------VSIKKLRITNCHKLSALPEGIGK--------------------------- 667 (784)
Q Consensus 645 ------------------------------~~L~~L~L~~~~~~~~lp~~l~~--------------------------- 667 (784)
++|++|++++|.+.+..|..+..
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 67888888888765555543321
Q ss_pred ------------CCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCc-Ch
Q 003950 668 ------------LVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL-PS 734 (784)
Q Consensus 668 ------------l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l-p~ 734 (784)
.++|++|++++|.+.+..|..++.+++|+.|++++|.+.+..|..++.+++|++|++++|.++.+ |.
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred ccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence 25788899988888888888999999999999999988877788899999999999999999966 56
Q ss_pred hhhCCCCCCEEeCCCCchhcH--HHHhhcCCCcEEeee
Q 003950 735 SILNLENLEVVKCDEETAYQW--EYFQLGQAKFRIEVI 770 (784)
Q Consensus 735 ~l~~l~~L~~L~l~~~~~~~~--~~~~~~lp~L~i~~~ 770 (784)
.+.++++|+.|++++|..... ..+.. +|+|+....
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L 378 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKELAL 378 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEEC
T ss_pred HhcCcccCCEEECCCCcccccChhhccc-cccccEEEC
Confidence 789999999999999877654 22334 777754433
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=3e-19 Score=189.14 Aligned_cols=223 Identities=14% Similarity=0.151 Sum_probs=155.4
Q ss_pred CceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCccccccccCceeee
Q 003950 521 PEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKHLQNVSL 600 (784)
Q Consensus 521 ~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~l 600 (784)
+.++.+.|..+......|..|.++++|++|++++|.+..... ..++.+++|++|++++|.+..++....++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE---KAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG---GGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH---hHhhCcCCCCEEECCCCcCCccCccccccCCEEEC
Confidence 456666666655544445678888888888888764321100 22577888888888888887775545578888888
Q ss_pred eeccccccccCccccccccCCceEEEEEeCCCCC--CCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeec
Q 003950 601 VMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDL--IELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLAS 678 (784)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~ 678 (784)
.+|.+..+.... +..+++|+.|++++|.+. +..|..+..+ +|++|++++|.+ ..+|..+. ++|++|++++
T Consensus 131 ~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l-~~l~~~~~--~~L~~L~l~~ 202 (332)
T 2ft3_A 131 HDNRIRKVPKGV----FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL-TGIPKDLP--ETLNELHLDH 202 (332)
T ss_dssp CSSCCCCCCSGG----GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC-SSCCSSSC--SSCSCCBCCS
T ss_pred CCCccCccCHhH----hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC-CccCcccc--CCCCEEECCC
Confidence 888776554332 236788888888888764 3556667766 788888877663 44665443 6777778877
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhc
Q 003950 679 CTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQ 754 (784)
Q Consensus 679 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~ 754 (784)
|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.++.+|..+..+++|+.|++++|....
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCc
Confidence 7766666677777777888888777666655556777778888888888777777777777788888777776544
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=7.6e-19 Score=198.41 Aligned_cols=157 Identities=12% Similarity=0.099 Sum_probs=128.8
Q ss_pred ccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCC--CCchhccCCCCCCEEEeecCCCCCCCccc-ccCCCC
Q 003950 618 DAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLS--ALPEGIGKLVNLQMLTLASCTDLSALPDT-IGNLSN 694 (784)
Q Consensus 618 ~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~ 694 (784)
..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 467889999999998888888889999999999999988665 56678899999999999998887767754 778899
Q ss_pred CCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHHH--HhhcCCCc-EEeeec
Q 003950 695 LNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEY--FQLGQAKF-RIEVIQ 771 (784)
Q Consensus 695 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~--~~~~lp~L-~i~~~~ 771 (784)
|+.|++++|.+.+.+|..+. ++|+.|++++|.++.+|..+..+++|+.|++++|.....+. +.. +++| .++..+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDR-LTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhcc-CCcccEEECcC
Confidence 99999999988777776554 78999999999999999888899999999999987776543 333 7788 466666
Q ss_pred cccCcc
Q 003950 772 EDINLY 777 (784)
Q Consensus 772 ~~~~~~ 777 (784)
|++.++
T Consensus 478 N~~~c~ 483 (520)
T 2z7x_B 478 NPWDCS 483 (520)
T ss_dssp SCBCCC
T ss_pred CCCccc
Confidence 666653
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=1.1e-19 Score=190.11 Aligned_cols=227 Identities=17% Similarity=0.204 Sum_probs=182.3
Q ss_pred CceEEEEEecCCCCcccCh-hccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc--cccccccCce
Q 003950 521 PEVKVVVLNVRTKKYTLPK-FLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL--TTVRMKHLQN 597 (784)
Q Consensus 521 ~~l~~l~L~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~L~~ 597 (784)
+.++.+.|..+... .+|. .|.++++|++|++++|.+..... ....+..+++|++|++++|.+..+ ....+++|+.
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGC-CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEE-EEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccC-cccccccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 35666666665543 5554 57899999999999975421100 001245689999999999998776 3567899999
Q ss_pred eeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCC-CCchhccCCCCCCEEEe
Q 003950 598 VSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLS-ALPEGIGKLVNLQMLTL 676 (784)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L 676 (784)
|++++|.+...... ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+ .+|..+..+++|++|++
T Consensus 106 L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 106 LDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp EECTTSEEESSTTT---TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred EECCCCcccccccc---hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 99999987765431 123378999999999998888888889999999999999988665 57888999999999999
Q ss_pred ecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCC-cChhhhCCC-CCCEEeCCCCch
Q 003950 677 ASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFE-LPSSILNLE-NLEVVKCDEETA 752 (784)
Q Consensus 677 ~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-lp~~l~~l~-~L~~L~l~~~~~ 752 (784)
++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++. .|..+..++ +|+.|++++|..
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 9998887778899999999999999998777666678999999999999999884 556788884 999999998865
No 27
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=6.9e-20 Score=192.50 Aligned_cols=217 Identities=12% Similarity=0.024 Sum_probs=178.5
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCccccccccCceee
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKHLQNVS 599 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ 599 (784)
+++++.+.|..+......|..+.++++|++|++++|.+.. ...+..+++|++|++++|.++.+. ..++|+.|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~l~~L~~L~Ls~n~l~~l~--~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-----TLDLESLSTLRTLDLNNNYVQELL--VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-----EEEETTCTTCCEEECCSSEEEEEE--ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-----chhhhhcCCCCEEECcCCcccccc--CCCCcCEEE
Confidence 4466666776665555556789999999999999985421 112688999999999999988765 458999999
Q ss_pred eeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhc-cCCCCCCEEEeec
Q 003950 600 LVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGI-GKLVNLQMLTLAS 678 (784)
Q Consensus 600 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l-~~l~~L~~L~L~~ 678 (784)
+++|.+...... .+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+ ..+++|++|++++
T Consensus 106 l~~n~l~~~~~~-------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 106 AANNNISRVSCS-------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CCSSCCSEEEEC-------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCCCccCCcCcc-------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 999988766432 47889999999998888777788999999999999998776666666 4789999999999
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchh
Q 003950 679 CTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAY 753 (784)
Q Consensus 679 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~ 753 (784)
|.+.+. |. ...+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|...
T Consensus 179 N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 179 NFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 876543 43 345899999999999654 5666799999999999999999999999999999999999998775
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=4.7e-20 Score=216.25 Aligned_cols=176 Identities=16% Similarity=0.182 Sum_probs=113.0
Q ss_pred cCCCCCCCEEEecccCCCC------------------c--ccc--ccccCceeeeeeccccccccCccccccccCCceEE
Q 003950 568 FGALSNLKRIRLEHVSLPS------------------L--TTV--RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLE 625 (784)
Q Consensus 568 l~~l~~L~~L~L~~n~l~~------------------~--~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 625 (784)
++++++|++|+|++|.+++ + ... .+++|+.|++++|.+....+.. +..+++|+.
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~ 519 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQS 519 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG----GGGCSSCCE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH----HhCCCCCCE
Confidence 6677788888888887776 4 122 6777888888777655443322 226677777
Q ss_pred EEEeCCC-CCC-CCCcccCCCC-------CCcEEEccCCCCCCCCch--hccCCCCCCEEEeecCCCCCCCcccccCCCC
Q 003950 626 IDIDYCN-DLI-ELPDGLCDIV-------SIKKLRITNCHKLSALPE--GIGKLVNLQMLTLASCTDLSALPDTIGNLSN 694 (784)
Q Consensus 626 L~L~~~~-~~~-~lp~~i~~l~-------~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~ 694 (784)
|+|++|. +.+ .+|..+++++ +|++|+|++|.+. .+|. .++++++|++|+|++|.+. .+| .++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 7777776 555 5665444443 7777777776644 6666 6777777777777776655 666 6677777
Q ss_pred CCEEeccCCCCCCccchhhhCCCC-CCEEeccCCCCCCcChhhhCCCC--CCEEeCCCCc
Q 003950 695 LNFLDISECLNIQELPERIGELCS-LKTLCLKGCSMFELPSSILNLEN--LEVVKCDEET 751 (784)
Q Consensus 695 L~~L~l~~n~~~~~~p~~l~~l~~-L~~L~l~~n~l~~lp~~l~~l~~--L~~L~l~~~~ 751 (784)
|+.|+|++|.+. .+|..++.+++ |+.|++++|.++.+|..+..++. |+.|++++|.
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc
Confidence 777777776544 66666666766 77777777776666655444332 5555554443
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=3e-19 Score=205.83 Aligned_cols=222 Identities=17% Similarity=0.118 Sum_probs=132.2
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-----ccccccc
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-----TTVRMKH 594 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~ 594 (784)
++.++.+.+..+.. ..+| .+ .+++|+.|++++|...... .+..+++|++|++++|.++.. ....+++
T Consensus 306 ~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 306 HFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377 (606)
T ss_dssp TCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred cccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-----hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence 45666677766655 5566 34 7777777777776221111 245666777777777766543 2335566
Q ss_pred CceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCC-cccCCCCCCcEEEccCCCCCCCCchhccCCCCCCE
Q 003950 595 LQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELP-DGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQM 673 (784)
Q Consensus 595 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 673 (784)
|+.|++++|.+..+.. .+..+++|+.|++++|.+.+..| ..+.++++|++|++++|.+.+..|..++.+++|++
T Consensus 378 L~~L~L~~n~l~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 378 LRHLDLSFNGAIIMSA-----NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp CCEEECCSCSEEEECC-----CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccEeECCCCccccchh-----hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 7777776666544331 11245666666666665555554 45566666666666666655555666666666666
Q ss_pred EEeecCCCCC-CCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCc-ChhhhCCCCCCEEeCCCCc
Q 003950 674 LTLASCTDLS-ALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL-PSSILNLENLEVVKCDEET 751 (784)
Q Consensus 674 L~L~~~~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~ 751 (784)
|++++|.+.+ .+|..++.+++|+.|++++|.+.+..|..++.+++|++|++++|.++.+ |..+.++++|+.|++++|.
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 6666665554 2455566666666666666655555555566666666666666666544 4556666666666666665
Q ss_pred hhc
Q 003950 752 AYQ 754 (784)
Q Consensus 752 ~~~ 754 (784)
...
T Consensus 533 l~~ 535 (606)
T 3vq2_A 533 IET 535 (606)
T ss_dssp CCC
T ss_pred Ccc
Confidence 544
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=4.2e-19 Score=203.50 Aligned_cols=218 Identities=12% Similarity=0.073 Sum_probs=133.9
Q ss_pred ccCCCCCcEEEeeccccc--CCcCcCccccCCCCCCCEEEecccCCCCcc---ccccccCceeeeeeccccccccCcccc
Q 003950 541 LEKMDKLKVMIVTNYGFF--PAELSNIQVFGALSNLKRIRLEHVSLPSLT---TVRMKHLQNVSLVMCNVDQVVQNSTFH 615 (784)
Q Consensus 541 l~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~ 615 (784)
+.++++|++|++++|.+. +.. .|+.+++|++|+|++|.++.+. +..+++|+.|++++|.+..+.+..
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--- 142 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTY-----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--- 142 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTT-----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---
T ss_pred HccCCCCcEEECCCCCCCCCChH-----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH---
Confidence 455555555555554321 110 1445555555555555555442 234455555555555544332221
Q ss_pred ccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhcc-----------------------------
Q 003950 616 FSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIG----------------------------- 666 (784)
Q Consensus 616 ~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~----------------------------- 666 (784)
+..+++|++|+|++|.+.+..|..++++++|++|++++|.+.+..+..+.
T Consensus 143 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 143 -FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 221 (597)
T ss_dssp -TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred -hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCC
Confidence 12455555555555555554455555555555555555543322111111
Q ss_pred --------CCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhC
Q 003950 667 --------KLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILN 738 (784)
Q Consensus 667 --------~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~ 738 (784)
..++|++|++++|.+.+ +..++.+++|+.|+|++|.+.+..|..++.+++|+.|++++|.++.+|..+..
T Consensus 222 ~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 299 (597)
T 3oja_B 222 SINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 299 (597)
T ss_dssp CCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSC
T ss_pred cccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccccc
Confidence 12356666676666544 36688899999999999988888899999999999999999999999988888
Q ss_pred CCCCCEEeCCCCchhcHHHHhhcCCCcEEee
Q 003950 739 LENLEVVKCDEETAYQWEYFQLGQAKFRIEV 769 (784)
Q Consensus 739 l~~L~~L~l~~~~~~~~~~~~~~lp~L~i~~ 769 (784)
+++|+.|++++|.....+.....+|+|+...
T Consensus 300 l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330 (597)
T ss_dssp CTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred CCCCcEEECCCCCCCccCcccccCCCCCEEE
Confidence 9999999999997765433223377774333
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=2.4e-18 Score=196.10 Aligned_cols=156 Identities=11% Similarity=0.072 Sum_probs=110.7
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCC--CCchhccCCCCCCEEEeecCCCCCCCcc-cccCCCCC
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLS--ALPEGIGKLVNLQMLTLASCTDLSALPD-TIGNLSNL 695 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L 695 (784)
.+++|++|++++|.+.+..|..++++++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+.+|. .+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 45667777777777666667777777777777777766443 3345567777777777777776664554 36667777
Q ss_pred CEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHHH--HhhcCCCcE-Eeeecc
Q 003950 696 NFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEY--FQLGQAKFR-IEVIQE 772 (784)
Q Consensus 696 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~--~~~~lp~L~-i~~~~~ 772 (784)
+.|++++|.+.+.+|..+. ++|++|++++|.++.+|..+.++++|+.|++++|.....+. +.. +++|+ ++..+|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-l~~L~~L~l~~N 507 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDR-LTSLQYIWLHDN 507 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT-CTTCCCEECCSC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhc-CCCCCEEEecCC
Confidence 7777777766665554443 68999999999999999888899999999999887766543 333 77774 666667
Q ss_pred ccCcc
Q 003950 773 DINLY 777 (784)
Q Consensus 773 ~~~~~ 777 (784)
++.++
T Consensus 508 ~~~c~ 512 (562)
T 3a79_B 508 PWDCT 512 (562)
T ss_dssp CBCCC
T ss_pred CcCCC
Confidence 66654
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=192.01 Aligned_cols=223 Identities=13% Similarity=0.108 Sum_probs=125.6
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeeccccc--CCcCcCccccCCCCCCCEEEecccCCCCcc----ccccc
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFF--PAELSNIQVFGALSNLKRIRLEHVSLPSLT----TVRMK 593 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~----~~~l~ 593 (784)
+++++.+.|..+......|..|.++++|++|++++|.+. |.. .++.+++|++|++++|.+..+. ...++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS-----WFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH-----HHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh-----HhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 445555555544443333445555566666666554321 111 1445555666666665555442 23455
Q ss_pred cCceeeeeecc-ccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchh-ccCCCCC
Q 003950 594 HLQNVSLVMCN-VDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEG-IGKLVNL 671 (784)
Q Consensus 594 ~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L 671 (784)
+|+.|++.+|. +..+.+.. +..+++|++|++++|.+.+..|..+.++++|++|++++|.+ +.+|.. +..+++|
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L 224 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKD----FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSV 224 (353)
T ss_dssp TCCEEEEEESSSCCEECTTT----TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTE
T ss_pred CCcEEECCCCccccccCHHH----ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccc
Confidence 55566655552 22222111 12455566666666555555555555666666666665542 333332 2345566
Q ss_pred CEEEeecCCCCCCCcccc---cCCCCCCEEeccCCCCCC----ccchhhhCCCCCCEEeccCCCCCCcChhh-hCCCCCC
Q 003950 672 QMLTLASCTDLSALPDTI---GNLSNLNFLDISECLNIQ----ELPERIGELCSLKTLCLKGCSMFELPSSI-LNLENLE 743 (784)
Q Consensus 672 ~~L~L~~~~~~~~~p~~~---~~l~~L~~L~l~~n~~~~----~~p~~l~~l~~L~~L~l~~n~l~~lp~~l-~~l~~L~ 743 (784)
++|++++|.+.+..+..+ ...+.++.++++++.+.+ .+|..++.+++|++|++++|.++.+|..+ .++++|+
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCC
Confidence 666666555443322222 223445555555554333 36777889999999999999999999875 8999999
Q ss_pred EEeCCCCch
Q 003950 744 VVKCDEETA 752 (784)
Q Consensus 744 ~L~l~~~~~ 752 (784)
.|++++|..
T Consensus 305 ~L~L~~N~~ 313 (353)
T 2z80_A 305 KIWLHTNPW 313 (353)
T ss_dssp EEECCSSCB
T ss_pred EEEeeCCCc
Confidence 999998854
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=8.3e-19 Score=193.34 Aligned_cols=233 Identities=16% Similarity=0.186 Sum_probs=188.5
Q ss_pred cccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc---cccccccCceeeeeeccccccccC
Q 003950 535 YTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNVDQVVQN 611 (784)
Q Consensus 535 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~~~ 611 (784)
..+|..+. ++++.|++++|.+..... ..|..+++|++|+|++|.+..+ .+..+++|+.|++++|.+..+...
T Consensus 56 ~~iP~~~~--~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 56 REVPDGIS--TNTRLLNLHENQIQIIKV---NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCEECT---TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred CcCCCCCC--CCCcEEEccCCcCCeeCH---HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 56776654 789999999985421111 2378899999999999999877 355788999999999988866543
Q ss_pred ccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCch-hccCCCCCCEEEeecCCCCCCCccccc
Q 003950 612 STFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPE-GIGKLVNLQMLTLASCTDLSALPDTIG 690 (784)
Q Consensus 612 ~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~p~~~~ 690 (784)
.+ ..+++|++|+|++|.+....+..+.++++|++|++++|..++.+|. .+..+++|++|++++|.+. .+| .+.
T Consensus 131 ~~----~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~ 204 (440)
T 3zyj_A 131 AF----VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLT 204 (440)
T ss_dssp TS----CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCT
T ss_pred Hh----hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccC
Confidence 33 3789999999999988776677899999999999999877777765 6889999999999998654 666 488
Q ss_pred CCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcC-hhhhCCCCCCEEeCCCCchhcHHH-HhhcCCCc-EE
Q 003950 691 NLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELP-SSILNLENLEVVKCDEETAYQWEY-FQLGQAKF-RI 767 (784)
Q Consensus 691 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~lp~L-~i 767 (784)
.+++|+.|+|++|.+.+..|..+..+++|+.|++++|.++.++ ..+.++++|+.|++++|.....+. ....+++| .+
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 9999999999999888877889999999999999999999664 568899999999999997765432 22337888 56
Q ss_pred eeeccccCccc
Q 003950 768 EVIQEDINLYW 778 (784)
Q Consensus 768 ~~~~~~~~~~~ 778 (784)
+..+|++.|++
T Consensus 285 ~L~~Np~~CdC 295 (440)
T 3zyj_A 285 HLHHNPWNCNC 295 (440)
T ss_dssp ECCSSCEECSS
T ss_pred EcCCCCccCCC
Confidence 67777776654
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.1e-18 Score=192.98 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=187.5
Q ss_pred cccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc---cccccccCceeeeeeccccccccC
Q 003950 535 YTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNVDQVVQN 611 (784)
Q Consensus 535 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~~~ 611 (784)
..+|..+. ++|++|++++|.+..... ..|..+++|++|+|++|.++.+ .+..+++|+.|++++|.+..+...
T Consensus 67 ~~iP~~~~--~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 67 SEVPQGIP--SNTRYLNLMENNIQMIQA---DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CccCCCCC--CCccEEECcCCcCceECH---HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh
Confidence 45676554 689999999985421111 2268899999999999999876 355788999999999988766544
Q ss_pred ccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCch-hccCCCCCCEEEeecCCCCCCCccccc
Q 003950 612 STFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPE-GIGKLVNLQMLTLASCTDLSALPDTIG 690 (784)
Q Consensus 612 ~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~p~~~~ 690 (784)
.. ..+++|++|+|++|.+....+..+.++++|++|++++|..++.+|. .+..+++|++|++++|.+. .+| .+.
T Consensus 142 ~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~ 215 (452)
T 3zyi_A 142 AF----EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLT 215 (452)
T ss_dssp TS----SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCT
T ss_pred hh----cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-ccc
Confidence 33 3789999999999988766667899999999999999877887775 5889999999999998765 455 588
Q ss_pred CCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCc-ChhhhCCCCCCEEeCCCCchhcHHH-HhhcCCCc-EE
Q 003950 691 NLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL-PSSILNLENLEVVKCDEETAYQWEY-FQLGQAKF-RI 767 (784)
Q Consensus 691 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~-~~~~lp~L-~i 767 (784)
.+++|+.|+|++|.+.+..|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.....+. ....+++| .+
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 999999999999988888899999999999999999999966 5678999999999999997765432 22337888 46
Q ss_pred eeeccccCccc
Q 003950 768 EVIQEDINLYW 778 (784)
Q Consensus 768 ~~~~~~~~~~~ 778 (784)
+...|++.|++
T Consensus 296 ~L~~Np~~CdC 306 (452)
T 3zyi_A 296 HLHHNPWNCDC 306 (452)
T ss_dssp ECCSSCEECST
T ss_pred EccCCCcCCCC
Confidence 66677776554
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=3.8e-19 Score=186.03 Aligned_cols=229 Identities=21% Similarity=0.262 Sum_probs=184.5
Q ss_pred cccChhccCCCCCcEEEeecccc--cCCcCcCccccCCCCCCCEEEecccCCCCc-----cccccccCceeeeeeccccc
Q 003950 535 YTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLKRIRLEHVSLPSL-----TTVRMKHLQNVSLVMCNVDQ 607 (784)
Q Consensus 535 ~~~p~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~~L~l~~~~~~~ 607 (784)
..+|..+. ++|++|++++|.+ +|... |..+++|++|++++|.++.. ....+++|+.|++++|.+..
T Consensus 20 ~~ip~~~~--~~l~~L~L~~n~l~~i~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGV-----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92 (306)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE
T ss_pred ccCCCCCC--CCCCEEECCCCccCccCHhH-----hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc
Confidence 45666443 6899999999754 33322 68899999999999998754 33467899999999998875
Q ss_pred cccCccccccccCCceEEEEEeCCCCCCCCC-cccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCC-CC
Q 003950 608 VVQNSTFHFSDAFPNLLEIDIDYCNDLIELP-DGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLS-AL 685 (784)
Q Consensus 608 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~ 685 (784)
+... +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ .+
T Consensus 93 l~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 93 MSSN-----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp EEEE-----EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred Chhh-----cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 4332 2378999999999997766544 578999999999999998877888889999999999999988766 57
Q ss_pred cccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcCh-hhhCCCCCCEEeCCCCchhcH--HHHhhcC
Q 003950 686 PDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPS-SILNLENLEVVKCDEETAYQW--EYFQLGQ 762 (784)
Q Consensus 686 p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~~~~--~~~~~~l 762 (784)
|..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.++.++. .+..+++|+.|++++|..... ..+.. +
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~ 246 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH-F 246 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC-C
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh-h
Confidence 8899999999999999998877778889999999999999999997764 688999999999999977553 22333 5
Q ss_pred C-Cc-EEeeeccccCc
Q 003950 763 A-KF-RIEVIQEDINL 776 (784)
Q Consensus 763 p-~L-~i~~~~~~~~~ 776 (784)
| +| .++..++++.+
T Consensus 247 ~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 247 PSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTCCEEECTTCCEEC
T ss_pred hccCCEEEccCCCeec
Confidence 4 67 45566666654
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=1.6e-18 Score=203.35 Aligned_cols=226 Identities=16% Similarity=0.180 Sum_probs=132.5
Q ss_pred CCCceEEEEEecCCCCcccChhccCCCCCcEEEeeccc-----ccCCcCcCcc-ccCCCCCCCEEEecccCCCCcc----
Q 003950 519 EAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYG-----FFPAELSNIQ-VFGALSNLKRIRLEHVSLPSLT---- 588 (784)
Q Consensus 519 ~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~-----~~~~~~~~l~-~l~~l~~L~~L~L~~n~l~~~~---- 588 (784)
.+++++.+.|..+.....+|..+.++++|++|++++|. .+|..+..+. .+..+++|++|++++|.++.++
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 46788999998888888899999999999999999886 3555555443 4556667777777777766442
Q ss_pred ccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCC-CcEEEccCCCCCCCCchhccC
Q 003950 589 TVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVS-IKKLRITNCHKLSALPEGIGK 667 (784)
Q Consensus 589 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~-L~~L~L~~~~~~~~lp~~l~~ 667 (784)
+..+++|+.|++++|.+..+. .+..+++|+.|+|++|.+. .+|..+.++++ |++|+|++|.+. .+|..+..
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp------~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE------AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC------CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred hhcCCCCCEEECCCCCcccch------hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 245666777777776665322 1124556666666665544 55555555555 555555555433 44444333
Q ss_pred CC-------------------------------CCCEEEeecCCCCCCCcccc-cCCCCCCEEeccCCCCCCccchhhhC
Q 003950 668 LV-------------------------------NLQMLTLASCTDLSALPDTI-GNLSNLNFLDISECLNIQELPERIGE 715 (784)
Q Consensus 668 l~-------------------------------~L~~L~L~~~~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~~p~~l~~ 715 (784)
++ +|++|++++|.+. .+|..+ ..+++|+.|+|++|.+. .+|..+..
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~ 718 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLK 718 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhc
Confidence 22 3444444443332 333332 24555666666665433 44443322
Q ss_pred --------CCCCCEEeccCCCCCCcChhhh--CCCCCCEEeCCCCchhc
Q 003950 716 --------LCSLKTLCLKGCSMFELPSSIL--NLENLEVVKCDEETAYQ 754 (784)
Q Consensus 716 --------l~~L~~L~l~~n~l~~lp~~l~--~l~~L~~L~l~~~~~~~ 754 (784)
+++|+.|++++|.++.+|..+. .+++|+.|++++|....
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred cccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc
Confidence 1256666666666555655554 56666666666554443
No 37
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=3.8e-18 Score=176.33 Aligned_cols=197 Identities=16% Similarity=0.140 Sum_probs=160.1
Q ss_pred ccCCCCCcEEEeecccc--cCCcCcCccccCCCCCCCEEEecccCCCCc---cccccccCceeeeeeccccccccCcccc
Q 003950 541 LEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNVDQVVQNSTFH 615 (784)
Q Consensus 541 l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 615 (784)
+.++++|+.+++++++. +|..+ .++++.|++++|.++.+ .+..+++|+.|++++|.+..+...
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----
T ss_pred ccccCCccEEECCCCCCCcCCCCC--------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----
Confidence 56778888888887643 34332 25788899999988776 355678888999998887765443
Q ss_pred ccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCC
Q 003950 616 FSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNL 695 (784)
Q Consensus 616 ~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L 695 (784)
..+++|++|++++|.+. .+|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 74 --~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 74 --GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp --SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred --CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 37899999999998654 788888999999999999988666656789999999999999988776666677899999
Q ss_pred CEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCch
Q 003950 696 NFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETA 752 (784)
Q Consensus 696 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~ 752 (784)
+.|++++|.+....+..+..+++|+.|++++|.++.+|..+..+++|+.+++.+|..
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 999999997664444456889999999999999999999999999999999988754
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.78 E-value=3.6e-19 Score=205.23 Aligned_cols=244 Identities=12% Similarity=0.117 Sum_probs=163.9
Q ss_pred CCCceEEEEEecCCCCcccChhccCCCCCcEEEeeccc-----ccCCcCcCcc-------------------------cc
Q 003950 519 EAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYG-----FFPAELSNIQ-------------------------VF 568 (784)
Q Consensus 519 ~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~-----~~~~~~~~l~-------------------------~l 568 (784)
.+++++.+.|..+.....+|..+.++++|++|++++|. .+|..++.+. .+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence 35667777777776667777777777777777777765 2343332221 24
Q ss_pred CCCCCCCEEEecccCCC-Cc-cccccccCceeeeeeccccccccCccccccccCCc-eEEEEEeCCCCCCCCCcccCCCC
Q 003950 569 GALSNLKRIRLEHVSLP-SL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPN-LLEIDIDYCNDLIELPDGLCDIV 645 (784)
Q Consensus 569 ~~l~~L~~L~L~~n~l~-~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~~~~~lp~~i~~l~ 645 (784)
+.+++|++|++++|.+. .+ ....+++|+.|++++|.+..+... ...+++ |++|++++|.+. .+|..+..+.
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~-----l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~ 400 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN-----FCGFTEQVENLSFAHNKLK-YIPNIFDAKS 400 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTT-----SEEECTTCCEEECCSSCCS-SCCSCCCTTC
T ss_pred ccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHh-----hhhhcccCcEEEccCCcCc-ccchhhhhcc
Confidence 44555555555555544 22 223344555555555554422211 225666 888888888766 7777776654
Q ss_pred --CCcEEEccCCCCCCCCchhcc-------CCCCCCEEEeecCCCCCCCccc-ccCCCCCCEEeccCCCCCCccchhhhC
Q 003950 646 --SIKKLRITNCHKLSALPEGIG-------KLVNLQMLTLASCTDLSALPDT-IGNLSNLNFLDISECLNIQELPERIGE 715 (784)
Q Consensus 646 --~L~~L~L~~~~~~~~lp~~l~-------~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~p~~l~~ 715 (784)
+|++|++++|.+.+.+|..+. .+++|++|++++|.+. .+|.. +..+++|+.|++++|.+. .+|..+..
T Consensus 401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~ 478 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLK 478 (636)
T ss_dssp SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE
T ss_pred cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhc
Confidence 788888888888777777777 7778888888887766 55544 456888999999988665 66654432
Q ss_pred --------CCCCCEEeccCCCCCCcChhhh--CCCCCCEEeCCCCchhcHHHHhhcCCCcEEeee
Q 003950 716 --------LCSLKTLCLKGCSMFELPSSIL--NLENLEVVKCDEETAYQWEYFQLGQAKFRIEVI 770 (784)
Q Consensus 716 --------l~~L~~L~l~~n~l~~lp~~l~--~l~~L~~L~l~~~~~~~~~~~~~~lp~L~i~~~ 770 (784)
+++|+.|++++|.++.+|..+. .+++|+.|++++|.....+.-...+++|+....
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred cccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence 2389999999999999998887 899999999999877654332233788865554
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=1.3e-18 Score=200.50 Aligned_cols=248 Identities=15% Similarity=0.139 Sum_probs=201.1
Q ss_pred ccceeEEeecCCCccCCcccCCCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEE
Q 003950 498 LNASLLSISTDETFSSNWYDMEAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRI 577 (784)
Q Consensus 498 ~~~r~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L 577 (784)
...+.+.+......... ...++.++.+.+..+.....+ .+..+++|++|++++|.+..... ....+..+++|++|
T Consensus 307 ~~L~~L~l~~n~l~~lp--~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 307 FKWQSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGC-CSYSDLGTNSLRHL 381 (606)
T ss_dssp CCCSEEEEESCCCSSCC--CCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEE-CCHHHHCCSCCCEE
T ss_pred ccCCEEEcccccCcccc--cCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcc-hhhhhccCCcccEe
Confidence 35566777655431111 227788999999887544433 67799999999999975421100 00125788999999
Q ss_pred EecccCCCCc--cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCC
Q 003950 578 RLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNC 655 (784)
Q Consensus 578 ~L~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 655 (784)
++++|.+..+ ....+++|+.|++.+|.+....+. ..+..+++|++|++++|.+.+..|..++++++|++|++++|
T Consensus 382 ~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF---SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp ECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT---TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred ECCCCccccchhhccCCCCCCeeECCCCccCCccCh---hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 9999988765 455789999999999988766441 12237899999999999998889999999999999999999
Q ss_pred CCCC-CCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcCh
Q 003950 656 HKLS-ALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPS 734 (784)
Q Consensus 656 ~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~ 734 (784)
.+.+ .+|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.++.+|.
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~ 538 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES
T ss_pred cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH
Confidence 8776 378889999999999999999888888999999999999999998888889999999999999999999999999
Q ss_pred hhhCCC-CCCEEeCCCCchh
Q 003950 735 SILNLE-NLEVVKCDEETAY 753 (784)
Q Consensus 735 ~l~~l~-~L~~L~l~~~~~~ 753 (784)
.+..++ +|+.|++++|...
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCC
T ss_pred hHhhhcccCcEEEccCCCcc
Confidence 899997 6999999988653
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=1.2e-17 Score=176.52 Aligned_cols=245 Identities=14% Similarity=0.146 Sum_probs=190.9
Q ss_pred CccceeEEeecCCCccCCc-ccCCCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc--cCCcCcCccccCCCCC
Q 003950 497 PLNASLLSISTDETFSSNW-YDMEAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSN 573 (784)
Q Consensus 497 ~~~~r~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~ 573 (784)
+...+.+.+.......... .-..+++++.+.|..+......|..+.++++|++|++++|.+ +|..+ .++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~--------~~~ 122 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--------PKT 122 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--------CTT
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh--------ccc
Confidence 3456677776543222111 123568899999988877666789999999999999999854 33322 278
Q ss_pred CCEEEecccCCCCcc---ccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEE
Q 003950 574 LKRIRLEHVSLPSLT---TVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKL 650 (784)
Q Consensus 574 L~~L~L~~n~l~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 650 (784)
|++|++++|.+..+. ...+++|+.|++.+|.+..... ....+..+++|++|++++|.+. .+|..+. ++|++|
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L 197 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTEL 197 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB--CTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEE
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc--ChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEE
Confidence 999999999998873 4678899999999998754211 1112347899999999998755 4666554 799999
Q ss_pred EccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC
Q 003950 651 RITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 651 ~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+ ..+|..+..+++|++|++++|.++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSCCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-ccCChhhccCCCcCEEECCCCcCC
Confidence 9999987777788999999999999999988777777899999999999999955 488989999999999999999999
Q ss_pred CcChhh-h------CCCCCCEEeCCCCchhcH
Q 003950 731 ELPSSI-L------NLENLEVVKCDEETAYQW 755 (784)
Q Consensus 731 ~lp~~l-~------~l~~L~~L~l~~~~~~~~ 755 (784)
.+|... . ..++|+.+++.+|....|
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred ccChhhcCCcccccccccccceEeecCccccc
Confidence 887432 2 347889999999987655
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=6.6e-18 Score=174.61 Aligned_cols=201 Identities=15% Similarity=0.088 Sum_probs=167.2
Q ss_pred CCCCCEEEecccCCCCcc---ccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCC-CCCCCCcccCCCCC
Q 003950 571 LSNLKRIRLEHVSLPSLT---TVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCN-DLIELPDGLCDIVS 646 (784)
Q Consensus 571 l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~lp~~i~~l~~ 646 (784)
.++|++|++++|.++.+. +..+++|+.|++++|.+..+.+... ..+++|++|++++|. +....|..+..+++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF----TGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc----CCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 568999999999998773 5678899999999998876644333 378999999999997 44445788999999
Q ss_pred CcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccC
Q 003950 647 IKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKG 726 (784)
Q Consensus 647 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 726 (784)
|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 99999999987777788899999999999999888766667789999999999999976655555689999999999999
Q ss_pred CCCCCc-ChhhhCCCCCCEEeCCCCchhcHH--HHhhcCCCcE-EeeeccccCc
Q 003950 727 CSMFEL-PSSILNLENLEVVKCDEETAYQWE--YFQLGQAKFR-IEVIQEDINL 776 (784)
Q Consensus 727 n~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~--~~~~~lp~L~-i~~~~~~~~~ 776 (784)
|.++.+ |..+.++++|+.|++++|...... .+.. +|+|+ ++...|++.+
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP-LRALQYLRLNDNPWVC 239 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT-CTTCCEEECCSSCEEC
T ss_pred CcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc-CcccCEEeccCCCccC
Confidence 999965 778999999999999999776543 3444 88884 6666676654
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=1.3e-17 Score=177.90 Aligned_cols=248 Identities=13% Similarity=0.182 Sum_probs=165.9
Q ss_pred ccceeEEeecCCCccCCcccCCCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEE
Q 003950 498 LNASLLSISTDETFSSNWYDMEAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRI 577 (784)
Q Consensus 498 ~~~r~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L 577 (784)
...+.+.+......... .-..+++++.+.+..+... .+|. +..+++|++|++++|.... .+..+..+++|++|
T Consensus 88 ~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~----~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 88 VKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLS----DLSPLSNMTGLNYL 160 (347)
T ss_dssp TTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC-CCGG-GTTCTTCCEEECTTCTTCC----CCGGGTTCTTCCEE
T ss_pred CcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc-Cchh-hccCCceeEEECCCCCCcc----cccchhhCCCCcEE
Confidence 45566666544222111 1234677777777765443 3333 7888888888888864322 22336778888888
Q ss_pred EecccCCCCc-cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCC
Q 003950 578 RLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCH 656 (784)
Q Consensus 578 ~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 656 (784)
++++|.+... ....+++|+.|++.+|.+..+.. ...+++|+.|++++|.+....+ +..+++|++|++++|.
T Consensus 161 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 161 TVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232 (347)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred EecCCCcCCchhhccCCCCCEEEccCCccccccc------ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc
Confidence 8888887776 45677888888888887665433 2267788888888876554333 6777888888888876
Q ss_pred CCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCc-Chh
Q 003950 657 KLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL-PSS 735 (784)
Q Consensus 657 ~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l-p~~ 735 (784)
+. .+|. +..+++|++|++++|.+.. + ..+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++.. |..
T Consensus 233 l~-~~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 233 IT-DLSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp CC-CCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred cC-CCcc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhH
Confidence 44 3444 7778888888888776544 3 457777888888888875444 33 467778888888888887743 456
Q ss_pred hhCCCCCCEEeCCCCchhcHHHHhhcCCCcEE
Q 003950 736 ILNLENLEVVKCDEETAYQWEYFQLGQAKFRI 767 (784)
Q Consensus 736 l~~l~~L~~L~l~~~~~~~~~~~~~~lp~L~i 767 (784)
+.++++|+.|++++|.......+.. +|+|+.
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~~~~-l~~L~~ 337 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRPLAS-LSKMDS 337 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGGGGG-CTTCSE
T ss_pred hhccccCCEEEccCCccccccChhh-hhccce
Confidence 7778888888888777666554544 777743
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.77 E-value=3.8e-18 Score=196.57 Aligned_cols=247 Identities=12% Similarity=0.103 Sum_probs=192.8
Q ss_pred CCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc----ccccccc
Q 003950 519 EAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL----TTVRMKH 594 (784)
Q Consensus 519 ~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~ 594 (784)
.+++++.+.+..+.. ..+|..+..+++|++|++++|.+..... ..+..+++|++|++++|.+... ....+++
T Consensus 276 ~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 276 CFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQ---ISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TCTTCSEEECTTSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGG---GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred cccCCCEEeccCCcc-CCCChhhcccccCCEEECccCCcCcCch---hhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 356777777777654 3788888999999999999874421100 1267888999999999987632 3557889
Q ss_pred CceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCch-hccCCCCCCE
Q 003950 595 LQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPE-GIGKLVNLQM 673 (784)
Q Consensus 595 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~ 673 (784)
|+.|++++|.+...... ......+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|. .+..+++|++
T Consensus 352 L~~L~l~~n~l~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCC--NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp CCEEECCSSCCCEEEES--TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CCEEECCCCccccccCc--chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 99999999987665411 11123789999999999988888889999999999999999987766554 4889999999
Q ss_pred EEeecCCCCCCCcccccCCCCCCEEeccCCCCCCc---cchhhhCCCCCCEEeccCCCCCCc-ChhhhCCCCCCEEeCCC
Q 003950 674 LTLASCTDLSALPDTIGNLSNLNFLDISECLNIQE---LPERIGELCSLKTLCLKGCSMFEL-PSSILNLENLEVVKCDE 749 (784)
Q Consensus 674 L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~---~p~~l~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~ 749 (784)
|++++|.+.+..|..+..+++|+.|++++|.+.+. .+..++.+++|++|++++|.++.+ |..+.++++|+.|++++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 99999998888889999999999999999987662 235688999999999999999966 57889999999999999
Q ss_pred CchhcH--HHHhhcCCCcEEeeecc
Q 003950 750 ETAYQW--EYFQLGQAKFRIEVIQE 772 (784)
Q Consensus 750 ~~~~~~--~~~~~~lp~L~i~~~~~ 772 (784)
|..... ..+.. ++.|.++...+
T Consensus 510 N~l~~~~~~~l~~-l~~L~L~L~~N 533 (606)
T 3t6q_A 510 NRLTSSSIEALSH-LKGIYLNLASN 533 (606)
T ss_dssp SCCCGGGGGGGTT-CCSCEEECCSS
T ss_pred CccCcCChhHhCc-ccccEEECcCC
Confidence 876543 23433 66664444433
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=7.2e-18 Score=182.84 Aligned_cols=260 Identities=13% Similarity=0.115 Sum_probs=194.2
Q ss_pred cceeEEeecCCCccCCc-ccCCCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc--cCCcCcCccccCCCCCCC
Q 003950 499 NASLLSISTDETFSSNW-YDMEAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLK 575 (784)
Q Consensus 499 ~~r~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~L~ 575 (784)
..+.+.+.......... .-..+++++.+.|..+......|..+.++++|++|++++|.+ +|..+ |..+++|+
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~l~~L~ 144 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-----FHNTPKLT 144 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH-----hcCCCCCc
Confidence 45666665443221111 112467889999988877666677899999999999999854 33332 68899999
Q ss_pred EEEecccCCCCcc---ccccccCceeeeeeccccccccCccccc---------------------------------ccc
Q 003950 576 RIRLEHVSLPSLT---TVRMKHLQNVSLVMCNVDQVVQNSTFHF---------------------------------SDA 619 (784)
Q Consensus 576 ~L~L~~n~l~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------------------------------~~~ 619 (784)
+|++++|.+..+. ...+++|+.|++.+|.+..........+ ...
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence 9999999998773 5578899999999998765421111100 011
Q ss_pred CCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEe
Q 003950 620 FPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLD 699 (784)
Q Consensus 620 l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 699 (784)
+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+ ..+|..+..+++|+.|+
T Consensus 225 ~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLD 301 (390)
T ss_dssp CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEECSSSCCTTCCEEE
T ss_pred cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cccCcccCCCCCCCEEE
Confidence 23567777777765542 5688999999999999987777788999999999999999765 45777788899999999
Q ss_pred ccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhc--HHHHhhcCCCcEEee
Q 003950 700 ISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQ--WEYFQLGQAKFRIEV 769 (784)
Q Consensus 700 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~--~~~~~~~lp~L~i~~ 769 (784)
+++|.+ ..+|..++.+++|++|++++|.++.+| +..+++|+.|++++|.... ...+...++...+..
T Consensus 302 L~~n~l-~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~ 370 (390)
T 3o6n_A 302 LSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 370 (390)
T ss_dssp CCSSCC-CCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCC
T ss_pred CCCCcc-eecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccc
Confidence 999954 577888999999999999999999886 7789999999999987643 233333355444433
No 45
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2e-17 Score=169.44 Aligned_cols=133 Identities=20% Similarity=0.171 Sum_probs=74.1
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
.+++|++|++++|.+....+..+.++++|++|++++|.+....|..++.+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 45556666666555444444445556666666666655444444445566666666666655444333445566666666
Q ss_pred eccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChh-hhCCCCCCEEeCCCCc
Q 003950 699 DISECLNIQELPERIGELCSLKTLCLKGCSMFELPSS-ILNLENLEVVKCDEET 751 (784)
Q Consensus 699 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~~~ 751 (784)
++++|.+....+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 6666544443334455566666666666666655542 4556666666665553
No 46
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.76 E-value=2.9e-17 Score=175.12 Aligned_cols=230 Identities=13% Similarity=0.215 Sum_probs=149.9
Q ss_pred CCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCC-CCc-cccccccCc
Q 003950 519 EAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSL-PSL-TTVRMKHLQ 596 (784)
Q Consensus 519 ~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l-~~~-~~~~l~~L~ 596 (784)
.+++++.+.+..+... .+ +.+.++++|++|++++|.+ ..++.+..+++|++|++++|.. ... ....+++|+
T Consensus 86 ~l~~L~~L~L~~n~i~-~~-~~~~~l~~L~~L~l~~n~i-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~ 158 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKIT-DI-SALQNLTNLRELYLNEDNI-----SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLN 158 (347)
T ss_dssp TCTTCCEEECCSSCCC-CC-GGGTTCTTCSEEECTTSCC-----CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCC
T ss_pred cCCcCCEEEccCCccc-Cc-hHHcCCCcCCEEECcCCcc-----cCchhhccCCceeEEECCCCCCcccccchhhCCCCc
Confidence 3455555555544221 12 3456666666666665432 1122245666666666666632 222 344556666
Q ss_pred eeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEe
Q 003950 597 NVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTL 676 (784)
Q Consensus 597 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 676 (784)
.|++.+|.+..... ...+++|+.|++++|.+.. ++. +..+++|++|++++|.+.. ++. +..+++|++|++
T Consensus 159 ~L~l~~~~~~~~~~------~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l 228 (347)
T 4fmz_A 159 YLTVTESKVKDVTP------IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKI 228 (347)
T ss_dssp EEECCSSCCCCCGG------GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEEC
T ss_pred EEEecCCCcCCchh------hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEc
Confidence 66666666544432 2367778888888775543 333 6777888888888876444 333 778889999999
Q ss_pred ecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhc--
Q 003950 677 ASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQ-- 754 (784)
Q Consensus 677 ~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~-- 754 (784)
++|.+... |. +..+++|+.|++++|.+.. + +.+..+++|++|++++|.++.+| .+..+++|+.|++++|....
T Consensus 229 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 229 GNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp CSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGG
T ss_pred cCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcC
Confidence 98776544 43 8888999999999986544 4 36888999999999999998885 57889999999999887643
Q ss_pred HHHHhhcCCCcEEeeec
Q 003950 755 WEYFQLGQAKFRIEVIQ 771 (784)
Q Consensus 755 ~~~~~~~lp~L~i~~~~ 771 (784)
...+.. +|+|+.....
T Consensus 304 ~~~l~~-l~~L~~L~L~ 319 (347)
T 4fmz_A 304 MEVIGG-LTNLTTLFLS 319 (347)
T ss_dssp HHHHHT-CTTCSEEECC
T ss_pred hhHhhc-cccCCEEEcc
Confidence 233544 8888544443
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=8.1e-17 Score=178.80 Aligned_cols=240 Identities=14% Similarity=0.214 Sum_probs=136.3
Q ss_pred CCCceEEEEEecCCCCcccChhccCCCCCcEEEeeccccc--CC--------------cCcCccccCCCCCCCEEEeccc
Q 003950 519 EAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFF--PA--------------ELSNIQVFGALSNLKRIRLEHV 582 (784)
Q Consensus 519 ~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~--~~--------------~~~~l~~l~~l~~L~~L~L~~n 582 (784)
.+++++.+.+..+... .+|. +.++++|++|++++|.+. +. .+..+..+..+++|+.|++++|
T Consensus 110 ~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQIT-DIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187 (466)
T ss_dssp TCTTCCEEECCSSCCC-CCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCCCC-CChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence 3556666666554332 2232 666677777776665321 10 0011122455666666666666
Q ss_pred CCCCc-cccccccCceeeeeeccccccccCcc----------------ccccccCCceEEEEEeCCCCCCCCCcccCCCC
Q 003950 583 SLPSL-TTVRMKHLQNVSLVMCNVDQVVQNST----------------FHFSDAFPNLLEIDIDYCNDLIELPDGLCDIV 645 (784)
Q Consensus 583 ~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~----------------~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~ 645 (784)
.+..+ ....+++|+.|++.+|.+....+... ......+++|++|++++|.+.+..| +..++
T Consensus 188 ~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 188 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred cCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 66554 33455556666666555443322000 0011245566666666655443322 56666
Q ss_pred CCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEecc
Q 003950 646 SIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLK 725 (784)
Q Consensus 646 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 725 (784)
+|++|++++|.+.+ +|. +..+++|++|++++|.+.+..| +..+++|+.|++++|.+.+..| ++.+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 266 KLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp TCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred CCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 66666666665433 333 6666777777777665544322 6667777777777776555444 6677777777777
Q ss_pred CCCCCCcChhhhCCCCCCEEeCCCCchhcHHHHhhcCCCcEEeee
Q 003950 726 GCSMFELPSSILNLENLEVVKCDEETAYQWEYFQLGQAKFRIEVI 770 (784)
Q Consensus 726 ~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~lp~L~i~~~ 770 (784)
+|.++.++ .+.++++|+.|++++|....+..+.. +|+|+....
T Consensus 340 ~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~-l~~L~~L~l 382 (466)
T 1o6v_A 340 NNKVSDVS-SLANLTNINWLSAGHNQISDLTPLAN-LTRITQLGL 382 (466)
T ss_dssp SSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTT-CTTCCEEEC
T ss_pred CCccCCch-hhccCCCCCEEeCCCCccCccchhhc-CCCCCEEec
Confidence 77777664 57778888888888777766655544 777754333
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=185.44 Aligned_cols=250 Identities=12% Similarity=0.124 Sum_probs=174.6
Q ss_pred CceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCcc---ccccccCce
Q 003950 521 PEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLT---TVRMKHLQN 597 (784)
Q Consensus 521 ~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~ 597 (784)
+.++.+.+..+......+..+.++++|++|++++|.+..... ..|..+++|++|++++|.++.+. +..+++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE---DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH---hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 466777776665544344478888888888888874321100 12677888888888888888773 456788888
Q ss_pred eeeeeccccccccCccccccccCCceEEEEEeCCCCC-CCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEe
Q 003950 598 VSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDL-IELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTL 676 (784)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 676 (784)
|++++|.+..+... ..+..+++|++|++++|... ...|..+.++++|++|++++|.+.+..|..++.+++|++|++
T Consensus 129 L~L~~n~l~~l~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 129 LNLLGNPYKTLGET---SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp EECTTCCCSSSCSS---CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred EECCCCCCcccCch---hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 88888877654331 12236788888888888533 444567888888888888888777767888888888888888
Q ss_pred ecCCCCCCCccc-ccCCCCCCEEeccCCCCCCccchhh---hCCCCCCEEeccCCCCC-----CcChhhhCCCCCCEEeC
Q 003950 677 ASCTDLSALPDT-IGNLSNLNFLDISECLNIQELPERI---GELCSLKTLCLKGCSMF-----ELPSSILNLENLEVVKC 747 (784)
Q Consensus 677 ~~~~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~p~~l---~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l 747 (784)
++|.+ +.+|.. +..+++|+.|++++|.+.+..+..+ ...+.++.++++++.++ .+|..+.++++|+.|++
T Consensus 206 ~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 206 HMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp ECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 88765 444443 4457888888888887665443333 34567788888887766 47888999999999999
Q ss_pred CCCchhcHHH-HhhcCCCc-EEeeeccccCcc
Q 003950 748 DEETAYQWEY-FQLGQAKF-RIEVIQEDINLY 777 (784)
Q Consensus 748 ~~~~~~~~~~-~~~~lp~L-~i~~~~~~~~~~ 777 (784)
++|.....+. +...+++| .++..+|++.++
T Consensus 285 s~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 9998776543 22348888 466666666544
No 49
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=2.3e-17 Score=168.98 Aligned_cols=201 Identities=15% Similarity=0.136 Sum_probs=158.6
Q ss_pred CCCEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEc
Q 003950 573 NLKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRI 652 (784)
Q Consensus 573 ~L~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 652 (784)
+.+.++++++.++.++..-..+++.|++++|.+..+..... ..+++|++|++++|.+....+..+.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAF----HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSS----SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHh----cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 46677777777776654445678888888887766544322 37899999999999876555556789999999999
Q ss_pred cCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCc
Q 003950 653 TNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL 732 (784)
Q Consensus 653 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l 732 (784)
++|.+....+..+..+++|++|++++|.+....|..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99886655556778999999999999988877778889999999999999976655555589999999999999999988
Q ss_pred Ch-hhhCCCCCCEEeCCCCchhcHHH--HhhcCCCcE-EeeeccccCccc
Q 003950 733 PS-SILNLENLEVVKCDEETAYQWEY--FQLGQAKFR-IEVIQEDINLYW 778 (784)
Q Consensus 733 p~-~l~~l~~L~~L~l~~~~~~~~~~--~~~~lp~L~-i~~~~~~~~~~~ 778 (784)
|. .+.++++|+.|++++|.....+. +.. +++|+ ++..+|++.+++
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDS-LEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSCBCCSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhcc-ccCCCEEEecCCCeeCCC
Confidence 76 47899999999999987765432 333 78884 666667766553
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=2.7e-18 Score=179.92 Aligned_cols=198 Identities=19% Similarity=0.162 Sum_probs=119.2
Q ss_pred CCCCCcEEEeecccc---cCCcCcCccccCCCCCCCEEEecccCCCCc--ccccc-----ccCceeeeeeccccccccCc
Q 003950 543 KMDKLKVMIVTNYGF---FPAELSNIQVFGALSNLKRIRLEHVSLPSL--TTVRM-----KHLQNVSLVMCNVDQVVQNS 612 (784)
Q Consensus 543 ~l~~L~~L~l~~~~~---~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~~~~l-----~~L~~L~l~~~~~~~~~~~~ 612 (784)
++++|++|++++|.+ +|..+ .++.+++|++|++++|.+++. .+..+ ++|++|++++|.+....+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPL----LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCS----SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred CcCCccEEEccCCcccchhHHHH----HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH
Confidence 677777777777643 33322 025667777777777777665 11222 66777777777665544332
Q ss_pred cccccccCCceEEEEEeCCCCCCC--CCccc--CCCCCCcEEEccCCCCCC--CCch-hccCCCCCCEEEeecCCCCCCC
Q 003950 613 TFHFSDAFPNLLEIDIDYCNDLIE--LPDGL--CDIVSIKKLRITNCHKLS--ALPE-GIGKLVNLQMLTLASCTDLSAL 685 (784)
Q Consensus 613 ~~~~~~~l~~L~~L~L~~~~~~~~--lp~~i--~~l~~L~~L~L~~~~~~~--~lp~-~l~~l~~L~~L~L~~~~~~~~~ 685 (784)
. ..+++|++|++++|.+.+. +|..+ ..+++|++|++++|.+.+ .++. .+..+++|++|++++|.+.+..
T Consensus 169 ~----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 169 V----RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp C----CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred h----ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 2 2566777777777765543 23333 666777777777765432 2222 2345677777777776665555
Q ss_pred c-ccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCch
Q 003950 686 P-DTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETA 752 (784)
Q Consensus 686 p-~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~ 752 (784)
| ..+..+++|+.|++++|.+. .+|..+. ++|++|++++|.++.+|. +..+++|+.|++++|..
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 3 34455667777777776544 5665554 667777777777776665 66777777777776644
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=2.3e-17 Score=174.61 Aligned_cols=243 Identities=12% Similarity=0.122 Sum_probs=184.5
Q ss_pred ccceeEEeecCCCccCC-cccCCCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc--cCCcCcCccccCCCCCC
Q 003950 498 LNASLLSISTDETFSSN-WYDMEAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNL 574 (784)
Q Consensus 498 ~~~r~lsi~~~~~~~~~-~~~~~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~L 574 (784)
...+.+.+......... ..-..++.++.+.|..+......|..+.++++|++|++++|.+ +|..+ .++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--------~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--------PSSL 125 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC--------CTTC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc--------cccC
Confidence 45677777654322111 1123467889998888877666788999999999999999854 33332 2789
Q ss_pred CEEEecccCCCCcc---ccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEE
Q 003950 575 KRIRLEHVSLPSLT---TVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLR 651 (784)
Q Consensus 575 ~~L~L~~n~l~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 651 (784)
++|++++|.+..+. +..+++|+.|++.+|.+...... . ..+..+ +|+.|++++|.+.+ +|..+. ++|++|+
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~-~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~ 199 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE-P-GAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELH 199 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC-T-TSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCB
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC-c-ccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEE
Confidence 99999999998873 45788999999999987542111 1 111234 89999999987654 666554 7899999
Q ss_pred ccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCC
Q 003950 652 ITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFE 731 (784)
Q Consensus 652 L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 731 (784)
+++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+ ..+|..++.+++|+.|++++|.++.
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEECCCCCCCc
Confidence 999887777778899999999999999888777777899999999999999855 4888889999999999999999997
Q ss_pred cChh-hhC------CCCCCEEeCCCCchhcH
Q 003950 732 LPSS-ILN------LENLEVVKCDEETAYQW 755 (784)
Q Consensus 732 lp~~-l~~------l~~L~~L~l~~~~~~~~ 755 (784)
+|.. +.. .++|+.|++.+|....+
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp CCTTSSSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred cChhHccccccccccccccceEeecCccccc
Confidence 7643 322 46789999998876543
No 52
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1.1e-17 Score=172.74 Aligned_cols=203 Identities=15% Similarity=0.089 Sum_probs=167.0
Q ss_pred cCCCCCCCEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCC
Q 003950 568 FGALSNLKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSI 647 (784)
Q Consensus 568 l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 647 (784)
++++++++.++++++.++.++..-.++++.|++++|.+..+..... ..+++|++|+|++|.+.+. |. .+.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL----MPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGG----TTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHh----hcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 5788999999999999998866666899999999999876654333 3789999999999976653 33 3789999
Q ss_pred cEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCC
Q 003950 648 KKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGC 727 (784)
Q Consensus 648 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 727 (784)
++|++++|. +..+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 999999986 5588988999999999999998887776788999999999999999777665666789999999999999
Q ss_pred CCCCcChh-hhCCCCCCEEeCCCCchhcHHHHhhcCCCc-EEeeeccccCcc
Q 003950 728 SMFELPSS-ILNLENLEVVKCDEETAYQWEYFQLGQAKF-RIEVIQEDINLY 777 (784)
Q Consensus 728 ~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~lp~L-~i~~~~~~~~~~ 777 (784)
.++.+|.. +.++++|+.|++++|.....+.-....++| .+...+|++.|+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 99999875 478999999999999877653322225566 466666777664
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.2e-18 Score=193.78 Aligned_cols=223 Identities=11% Similarity=0.028 Sum_probs=178.0
Q ss_pred ccChhccCC----CCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-cccccccCceeeeeecccccccc
Q 003950 536 TLPKFLEKM----DKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQ 610 (784)
Q Consensus 536 ~~p~~l~~l----~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~ 610 (784)
.+|..+..+ ++|++|++++|.+..... ..|+.+++|++|+|++|.+++. .+..+++|+.|++++|.+..+.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~- 96 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISA---ADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL- 96 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCG---GGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCH---HHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC-
Confidence 445555544 489999999985432111 2368899999999999999865 5668899999999999876543
Q ss_pred CccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCccccc
Q 003950 611 NSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIG 690 (784)
Q Consensus 611 ~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~ 690 (784)
..++|++|++++|.+.+..+. .+++|++|++++|.+.+..|..++.+++|++|+|++|.+.+..|..+.
T Consensus 97 --------~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 97 --------VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp --------ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred --------CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 348999999999987765443 468999999999998887788899999999999999998887888776
Q ss_pred -CCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHHHHhhcCCCcE-Ee
Q 003950 691 -NLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEYFQLGQAKFR-IE 768 (784)
Q Consensus 691 -~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~lp~L~-i~ 768 (784)
.+++|+.|+|++|.+.+. |. ...+++|++|++++|.++.+|+.+..+++|+.|++++|.....+.....+|+|. ++
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243 (487)
T ss_dssp GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE
T ss_pred hhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEE
Confidence 799999999999976554 43 456999999999999999999999999999999999998776443333367774 44
Q ss_pred eeccccC
Q 003950 769 VIQEDIN 775 (784)
Q Consensus 769 ~~~~~~~ 775 (784)
..+|.+.
T Consensus 244 l~~N~l~ 250 (487)
T 3oja_A 244 LRGNGFH 250 (487)
T ss_dssp CTTCCBC
T ss_pred cCCCCCc
Confidence 5555554
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.3e-17 Score=171.42 Aligned_cols=206 Identities=17% Similarity=0.144 Sum_probs=158.6
Q ss_pred cccChhccCCCCCcEEEeeccccc--CCcCcCccccCCCCCCCEEEecccCCCCc---cccccccCceeeeeeccccccc
Q 003950 535 YTLPKFLEKMDKLKVMIVTNYGFF--PAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNVDQVV 609 (784)
Q Consensus 535 ~~~p~~l~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~ 609 (784)
..+|..+. ++|++|++++|.+. +.. .|..+++|++|++++|.++.+ .+..+++|+.|++++|.+....
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSY-----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTT-----TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred cccCCCCC--CCccEEECCCCcccccCHh-----HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 44565443 57888888887442 221 267788899999998888766 3456788899999888877654
Q ss_pred cCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCC-CCchhccCCCCCCEEEeecCCCCCCCccc
Q 003950 610 QNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLS-ALPEGIGKLVNLQMLTLASCTDLSALPDT 688 (784)
Q Consensus 610 ~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~p~~ 688 (784)
.... ..+++|++|++++|.+.+..+..++++++|++|++++|.+.. .+|..++.+++|++|++++|.+.+..+..
T Consensus 93 ~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 93 LGAF----SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp TTTT----TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred hhhh----cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 4332 378899999999998877666678999999999999987655 36889999999999999998877766677
Q ss_pred ccCCCCCC----EEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChh-hhCCCCCCEEeCCCCch
Q 003950 689 IGNLSNLN----FLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSS-ILNLENLEVVKCDEETA 752 (784)
Q Consensus 689 ~~~l~~L~----~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~~~~ 752 (784)
+..+++|+ .|++++|.+. .+|.......+|+.|++++|.++.+|.. +.++++|+.|++++|..
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCC-EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred hhhhhhccccceeeecCCCccc-ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 77666666 8999998655 4454555556899999999999988865 58899999999987754
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=5e-17 Score=180.50 Aligned_cols=213 Identities=17% Similarity=0.229 Sum_probs=161.1
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-cccccccCcee
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKHLQNV 598 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L 598 (784)
++.++.+.+..+... . ...+..+++|++|++++|... ....++.+++|+.|++++|.+..+ ....+++|+.|
T Consensus 176 l~~L~~L~l~~n~l~-~-~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 248 (466)
T 1o6v_A 176 LTTLERLDISSNKVS-D-ISVLAKLTNLESLIATNNQIS-----DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 248 (466)
T ss_dssp CTTCCEEECCSSCCC-C-CGGGGGCTTCSEEECCSSCCC-----CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred CCCCCEEECcCCcCC-C-ChhhccCCCCCEEEecCCccc-----ccccccccCCCCEEECCCCCcccchhhhcCCCCCEE
Confidence 345555555444321 1 233566666666666665321 112256677888888888887776 45577888888
Q ss_pred eeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeec
Q 003950 599 SLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLAS 678 (784)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~ 678 (784)
++++|.+....+ ...+++|+.|++++|.+.+. |. +..+++|++|++++|.+.+ ++. ++.+++|++|++++
T Consensus 249 ~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 249 DLANNQISNLAP------LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYF 318 (466)
T ss_dssp ECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCS
T ss_pred ECCCCccccchh------hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcC
Confidence 888887765543 23789999999999977654 33 8899999999999988655 443 88999999999999
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhc
Q 003950 679 CTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQ 754 (784)
Q Consensus 679 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~ 754 (784)
|.+.+..| +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++.+++ +.++++|+.|++++|....
T Consensus 319 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 319 NNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 98776655 78999999999999966554 468999999999999999997766 8999999999999986654
No 56
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=4.2e-17 Score=190.49 Aligned_cols=255 Identities=16% Similarity=0.127 Sum_probs=180.1
Q ss_pred CCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc----cCC---------cC----------cC--ccccCCCCC
Q 003950 519 EAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF----FPA---------EL----------SN--IQVFGALSN 573 (784)
Q Consensus 519 ~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~----~~~---------~~----------~~--l~~l~~l~~ 573 (784)
.+++++.+.+..+......|..|.++++|++|++++|.. ++. .+ .. ...+..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 356777777777666565667788888888888877531 110 00 00 013556677
Q ss_pred CCEEEecccCCCCc----cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCC--CCCCcccCCCCCC
Q 003950 574 LKRIRLEHVSLPSL----TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDL--IELPDGLCDIVSI 647 (784)
Q Consensus 574 L~~L~L~~n~l~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~~lp~~i~~l~~L 647 (784)
|++|++++|.+.+. ....+++|+.|++++|.+..+.+... ..+++|+.|++++|... +.+|..+.++++|
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF----ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT----TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh----hcCcccccchhccccccccccCCcccccCCCC
Confidence 77777777766431 34456677777777776554433322 25778888888887654 5678889999999
Q ss_pred cEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCC----Cc----ccccCCCCCCEEeccCCCCCCccch-hhhCCCC
Q 003950 648 KKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSA----LP----DTIGNLSNLNFLDISECLNIQELPE-RIGELCS 718 (784)
Q Consensus 648 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~----~p----~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~ 718 (784)
++|++++|.+.+..|..+..+++|++|++++|.+.+. +| ..+.++++|+.|++++|.+. .+|. .++.+++
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~ 561 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE 561 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccC
Confidence 9999999887666666788999999999999876542 11 23788899999999998665 5554 5889999
Q ss_pred CCEEeccCCCCCCcChh-hhCCCCCCEEeCCCCchhcHH--HHhhcCCCc-EEeeeccccCccc
Q 003950 719 LKTLCLKGCSMFELPSS-ILNLENLEVVKCDEETAYQWE--YFQLGQAKF-RIEVIQEDINLYW 778 (784)
Q Consensus 719 L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~--~~~~~lp~L-~i~~~~~~~~~~~ 778 (784)
|+.|++++|.++.+|.. +.++++|+.|++++|...... .+...+++| .++..+|++.|+|
T Consensus 562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 99999999999988865 578999999999999776542 233136777 4666666665543
No 57
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=2.6e-17 Score=168.73 Aligned_cols=182 Identities=16% Similarity=0.110 Sum_probs=91.8
Q ss_pred hccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccc
Q 003950 540 FLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSD 618 (784)
Q Consensus 540 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 618 (784)
.+..+++|+.|++++++. ..++.+..+++|++|++++|.+..+ ....+++|++|++++|.+..+.+.. +.
T Consensus 36 ~~~~l~~L~~L~l~~~~i-----~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~ 106 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDI-----KSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGV----FD 106 (272)
T ss_dssp CHHHHTTCCEEECTTSCC-----CCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTT----TT
T ss_pred ccccccceeeeeeCCCCc-----ccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhH----hc
Confidence 345567777777776542 2223356666777777777666654 2334455555555555444332221 12
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
.+++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..++.+++|++|++++|.+.+..+..++.+++|++|
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 44555555555554444444444555555555555554333333334455555555555554443333344555555555
Q ss_pred eccCCCCCCccchhhhCCCCCCEEeccCCCCC
Q 003950 699 DISECLNIQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 699 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
++++|.+.+..|..++.+++|+.|++++|++.
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 55555444433334455555555555555443
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.4e-17 Score=170.63 Aligned_cols=185 Identities=14% Similarity=0.098 Sum_probs=88.2
Q ss_pred hccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCcc---ccccccCceeeeeeccccccccCccccc
Q 003950 540 FLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLT---TVRMKHLQNVSLVMCNVDQVVQNSTFHF 616 (784)
Q Consensus 540 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 616 (784)
.+..+++|++|++++|.+. .++.+..+++|++|++++|.++.+. ...+++|++|++.+|.+..+.+..
T Consensus 58 ~l~~l~~L~~L~l~~n~l~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---- 128 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV---- 128 (272)
T ss_dssp TGGGCTTCCEEECTTSCCC-----CCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT----
T ss_pred ccccCCCCcEEECCCCCCC-----CchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHH----
Confidence 3455555555555554321 1123445555555555555555442 234455555555555544332221
Q ss_pred cccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCC
Q 003950 617 SDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLN 696 (784)
Q Consensus 617 ~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 696 (784)
+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|+
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 12445555555555544443344445555555555555544433333345555555555555554444444445555555
Q ss_pred EEeccCCCCCCccchhhhCCCCCCEEeccCCCCC-CcChhhhCCC
Q 003950 697 FLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSILNLE 740 (784)
Q Consensus 697 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~lp~~l~~l~ 740 (784)
.|++++|.+.+ .+++|+.|++..|.++ .+|.+++++.
T Consensus 209 ~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 209 YIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp EEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred EEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 55555553322 2334555555555544 4444444443
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=196.67 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=78.1
Q ss_pred CCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEec
Q 003950 645 VSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCL 724 (784)
Q Consensus 645 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 724 (784)
++|+.|++++|.+.+..|..++.+++|++|+|++|.+.+..|..+..+++|++|++++|.+.+..|..++.+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 45666777766655555666777777777777777766666667777777777777777666666667777777777777
Q ss_pred cCCCCCCcCh-hhhCCCCCCEEeCCCCchhc
Q 003950 725 KGCSMFELPS-SILNLENLEVVKCDEETAYQ 754 (784)
Q Consensus 725 ~~n~l~~lp~-~l~~l~~L~~L~l~~~~~~~ 754 (784)
++|.++.++. .+..+++|+.|++++|....
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 7777776653 46777777887777776554
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.73 E-value=4.1e-17 Score=190.64 Aligned_cols=248 Identities=16% Similarity=0.149 Sum_probs=148.3
Q ss_pred CCCceEEEEEecCCCCcccChhccCCCCCcEEEeeccccc---C-CcCcCc--cccCCCCCCCEEEecccCCCCcc---c
Q 003950 519 EAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFF---P-AELSNI--QVFGALSNLKRIRLEHVSLPSLT---T 589 (784)
Q Consensus 519 ~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~---~-~~~~~l--~~l~~l~~L~~L~L~~n~l~~~~---~ 589 (784)
.+++++.+.+..+......|..+..+++|++|+++++... + ..+..+ ..+..+++|++|++++|.++++. +
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 349 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence 4677888888877766677788888888888888764211 0 011111 13677888888888888877662 4
Q ss_pred cccccCceeeeeecccc--ccccCcc----------------------ccccccCCceEEEEEeCCCCCCCCC-cccCCC
Q 003950 590 VRMKHLQNVSLVMCNVD--QVVQNST----------------------FHFSDAFPNLLEIDIDYCNDLIELP-DGLCDI 644 (784)
Q Consensus 590 ~~l~~L~~L~l~~~~~~--~~~~~~~----------------------~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l 644 (784)
..+++|+.|++++|.+. .+..... ...+..+++|++|++++|.+.+.+| ..+.++
T Consensus 350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l 429 (680)
T 1ziw_A 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429 (680)
T ss_dssp TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence 56677788877776432 1111000 0111234555555555555444443 345555
Q ss_pred CCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCC--CCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEE
Q 003950 645 VSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDL--SALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTL 722 (784)
Q Consensus 645 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~--~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 722 (784)
++|++|++++|.+....|..+..+++|++|++++|... +.+|..+..+++|+.|++++|.+.+..|..++.+++|++|
T Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 509 (680)
T 1ziw_A 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509 (680)
T ss_dssp TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEE
Confidence 55555555555544444445555556666666555443 4566677777777777777776655555557777777777
Q ss_pred eccCCCCCCcCh---------hhhCCCCCCEEeCCCCchhcHHH--HhhcCCCcEE
Q 003950 723 CLKGCSMFELPS---------SILNLENLEVVKCDEETAYQWEY--FQLGQAKFRI 767 (784)
Q Consensus 723 ~l~~n~l~~lp~---------~l~~l~~L~~L~l~~~~~~~~~~--~~~~lp~L~i 767 (784)
++++|.++.++. .+.++++|+.|++++|.....+. +.. +++|+.
T Consensus 510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-l~~L~~ 564 (680)
T 1ziw_A 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD-LFELKI 564 (680)
T ss_dssp ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCE
T ss_pred eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc-ccCcce
Confidence 777777765421 25677777777777776654432 333 666643
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=8.4e-17 Score=177.33 Aligned_cols=202 Identities=14% Similarity=0.155 Sum_probs=115.1
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCccccccccCceee
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKHLQNVS 599 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ 599 (784)
++.++.+.|..+.... +| ++.+++|++|++++|.+.. ++ ++.+++|++|++++|.++.+....+++|+.|+
T Consensus 63 l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-----~~-~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-----LD-VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-----CC-CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-----ee-cCCCCcCCEEECCCCcCCeecCCCCCcCCEEE
Confidence 4555555555543322 23 5566666666666654321 11 45566666666666666665555566666666
Q ss_pred eeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecC
Q 003950 600 LVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASC 679 (784)
Q Consensus 600 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 679 (784)
+++|.+..+. ...+++|++|++++|...+.+ .++.+++|++|++++|.+.+ +| ++.+++|+.|++++|
T Consensus 134 l~~N~l~~l~-------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 134 CARNTLTEID-------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTN 201 (457)
T ss_dssp CTTSCCSCCC-------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSS
T ss_pred CCCCccceec-------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCC
Confidence 6666555431 124566666666666555544 25566666666666655333 44 566666666666665
Q ss_pred CCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCC
Q 003950 680 TDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEE 750 (784)
Q Consensus 680 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~ 750 (784)
.+.+. .++.+++|+.|++++|.+.+ +| ++.+++|+.|++++|.++.+| +..+++|+.|+++.+
T Consensus 202 ~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 202 NITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQT 264 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTC
T ss_pred cCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCC
Confidence 55443 25666666666666665444 44 566666777777766666655 344555555544443
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=1.6e-18 Score=182.13 Aligned_cols=222 Identities=10% Similarity=0.016 Sum_probs=175.3
Q ss_pred ChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccc
Q 003950 538 PKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHF 616 (784)
Q Consensus 538 p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 616 (784)
+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+++. ....+++|+.|++++|.+..+.
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~------- 96 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISA---ADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL------- 96 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCH---HHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE-------
T ss_pred HHHhccCCCCCEEECcCCccCcCCH---HHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc-------
Confidence 3455678899999999985422111 1368899999999999999765 5667899999999999876543
Q ss_pred cccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccc-cCCCCC
Q 003950 617 SDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTI-GNLSNL 695 (784)
Q Consensus 617 ~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~-~~l~~L 695 (784)
..++|++|++++|.+.+..+. .+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+ ..+++|
T Consensus 97 --~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp --ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred --CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 348999999999987665443 36889999999998777667788999999999999998877666666 478999
Q ss_pred CEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHHHHhhcCCCcE-Eeeecccc
Q 003950 696 NFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEYFQLGQAKFR-IEVIQEDI 774 (784)
Q Consensus 696 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~lp~L~-i~~~~~~~ 774 (784)
++|++++|.+.+ +|. ...+++|++|++++|.++.+|..+..+++|+.|++++|.....+.....+++|+ ++...+.+
T Consensus 172 ~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 172 EHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred CEEECCCCcCcc-ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc
Confidence 999999996544 443 446899999999999999999899999999999999998776543333377884 55555555
Q ss_pred Cc
Q 003950 775 NL 776 (784)
Q Consensus 775 ~~ 776 (784)
.+
T Consensus 250 ~~ 251 (317)
T 3o53_A 250 HC 251 (317)
T ss_dssp BH
T ss_pred cC
Confidence 53
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=3.2e-17 Score=195.51 Aligned_cols=264 Identities=14% Similarity=0.113 Sum_probs=167.8
Q ss_pred CCccceeEEeecCCCccCC-cccCCCCceEEEEEecCCCCccc-ChhccCCCCCcEEEeecccc---cCCcCcCccccCC
Q 003950 496 HPLNASLLSISTDETFSSN-WYDMEAPEVKVVVLNVRTKKYTL-PKFLEKMDKLKVMIVTNYGF---FPAELSNIQVFGA 570 (784)
Q Consensus 496 ~~~~~r~lsi~~~~~~~~~-~~~~~~~~l~~l~L~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~---~~~~~~~l~~l~~ 570 (784)
.+...+.|.++.+...... ..-..+++++.+.|..+.....+ |..|.++++|++|++++|.+ .|.. |++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~------~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA------FQG 95 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS------SCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH------ccC
Confidence 4556777777654322111 11124567777777777555555 66778888888888887643 2322 456
Q ss_pred CCCCCEEEecccCCCCc-----cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCccc----
Q 003950 571 LSNLKRIRLEHVSLPSL-----TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGL---- 641 (784)
Q Consensus 571 l~~L~~L~L~~n~l~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i---- 641 (784)
+++|++|+|++|.+.+. ....+++|+.|++++|.+...... ..+..+++|++|+|++|.+.+..|..+
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~---~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC---GGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc---hhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 66777777777766542 144566667777776665543221 112256666666666665544444333
Q ss_pred ----------------------CCCCC------CcEEEccCCCCCCCCchhccC--------------------------
Q 003950 642 ----------------------CDIVS------IKKLRITNCHKLSALPEGIGK-------------------------- 667 (784)
Q Consensus 642 ----------------------~~l~~------L~~L~L~~~~~~~~lp~~l~~-------------------------- 667 (784)
+.+.+ |++|++++|.+.+..|..+..
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 33333 667777666544443332221
Q ss_pred ------------CCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCc-Ch
Q 003950 668 ------------LVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL-PS 734 (784)
Q Consensus 668 ------------l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l-p~ 734 (784)
.++|++|++++|.+.+..|..+..+++|+.|+|++|.+.+..|..++.+++|++|++++|.++.+ |.
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 25677888877777666677788888999999998877777777888899999999999998865 56
Q ss_pred hhhCCCCCCEEeCCCCchhcHHH--HhhcCCCcEEee
Q 003950 735 SILNLENLEVVKCDEETAYQWEY--FQLGQAKFRIEV 769 (784)
Q Consensus 735 ~l~~l~~L~~L~l~~~~~~~~~~--~~~~lp~L~i~~ 769 (784)
.+..+++|+.|++++|....... +.. +++|+...
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~ 368 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKF-LEKLQTLD 368 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSCS-CCCCCEEE
T ss_pred HhcCCCCCCEEECCCCCCCccChhhhcC-CCCCCEEE
Confidence 78889999999998886654322 333 77775333
No 64
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=6.3e-17 Score=163.72 Aligned_cols=176 Identities=16% Similarity=0.131 Sum_probs=126.7
Q ss_pred CCCEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEc
Q 003950 573 NLKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRI 652 (784)
Q Consensus 573 ~L~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 652 (784)
+.+.++++++.++.++..-..+++.|++.+|.+..+.+... ..+++|++|+|++|.+.+..|..+.++++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF----RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTT----TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHh----cCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34566666666666544444567777777776655544322 26778888888888777777777788888888888
Q ss_pred cCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCc
Q 003950 653 TNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL 732 (784)
Q Consensus 653 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l 732 (784)
++|.+....|..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+.+..+..++.+++|++|++++|.++.+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88776655556677888888888888776655555567888888888888866555455678888888888888888877
Q ss_pred Ch-hhhCCCCCCEEeCCCCch
Q 003950 733 PS-SILNLENLEVVKCDEETA 752 (784)
Q Consensus 733 p~-~l~~l~~L~~L~l~~~~~ 752 (784)
|. .+.++++|+.|++++|..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCB
T ss_pred CHHHHhCCCCCCEEEeeCCce
Confidence 64 567788888888877754
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=1.8e-17 Score=170.51 Aligned_cols=203 Identities=18% Similarity=0.132 Sum_probs=167.6
Q ss_pred CCCCEEEecccCCCCc---cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCc
Q 003950 572 SNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIK 648 (784)
Q Consensus 572 ~~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 648 (784)
++|++|++++|.++.+ .+..+++|+.|++++|.+..+..... ..+++|++|++++|.+.+..|..+.++++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTT----TTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHc----cCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 5799999999999876 34578899999999998876654332 3789999999999988887788899999999
Q ss_pred EEEccCCCCCCCCchhccCCCCCCEEEeecCCCCC-CCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCC----EEe
Q 003950 649 KLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLS-ALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLK----TLC 723 (784)
Q Consensus 649 ~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~----~L~ 723 (784)
+|++++|.+.+..+..++.+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..+..+..+++|+ .|+
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeee
Confidence 99999988766656679999999999999988766 4799999999999999999987776666777766666 899
Q ss_pred ccCCCCCCcChhhhCCCCCCEEeCCCCchhcHHH-HhhcCCCc-EEeeeccccCccc
Q 003950 724 LKGCSMFELPSSILNLENLEVVKCDEETAYQWEY-FQLGQAKF-RIEVIQEDINLYW 778 (784)
Q Consensus 724 l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~~~~lp~L-~i~~~~~~~~~~~ 778 (784)
+++|.++.+|.......+|+.|++++|.....+. +...+++| .++...|++.+++
T Consensus 184 ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 184 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 9999999988877777799999999998766533 22338888 4666667776654
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=186.93 Aligned_cols=221 Identities=12% Similarity=0.124 Sum_probs=180.2
Q ss_pred CceEEEEEecCCCCcccChhc-----cCCCCCcEEEeecccc-cCCcCcCccccCCC---CCCCEEEecccCCCCccc-c
Q 003950 521 PEVKVVVLNVRTKKYTLPKFL-----EKMDKLKVMIVTNYGF-FPAELSNIQVFGAL---SNLKRIRLEHVSLPSLTT-V 590 (784)
Q Consensus 521 ~~l~~l~L~~~~~~~~~p~~l-----~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~l---~~L~~L~L~~n~l~~~~~-~ 590 (784)
+.++.+.+..+...+.+|..+ .++++|+.+++++|.+ +|.. .+..+ .+|+.|++++|.+..... .
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 321 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS-----YIYEIFSNMNIKNFTVSGTRMVHMLCPS 321 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTH-----HHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccceecchh-----hhhcccccCceeEEEcCCCccccccchh
Confidence 356667776665556788877 8889999999888754 1210 11222 579999999999887753 7
Q ss_pred ccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCC--CCCcccCCCCCCcEEEccCCCCCCCCchh-ccC
Q 003950 591 RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLI--ELPDGLCDIVSIKKLRITNCHKLSALPEG-IGK 667 (784)
Q Consensus 591 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-l~~ 667 (784)
.+++|+.|++++|.+....+... ..+++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+.+|.. +..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENC----GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTC----CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hCCcccEEEeECCccChhhhhhh----ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 88999999999998876443322 378999999999998876 66788999999999999999877767764 788
Q ss_pred CCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChh-hhCCCCCCEEe
Q 003950 668 LVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSS-ILNLENLEVVK 746 (784)
Q Consensus 668 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~ 746 (784)
+++|++|++++|.+.+.+|..+. ++|+.|++++|.+. .+|..+..+++|++|++++|.++.+|.. +..+++|+.|+
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEE
Confidence 99999999999998888777664 79999999999655 8998888999999999999999999987 89999999999
Q ss_pred CCCCchh
Q 003950 747 CDEETAY 753 (784)
Q Consensus 747 l~~~~~~ 753 (784)
+++|...
T Consensus 475 l~~N~~~ 481 (520)
T 2z7x_B 475 LHTNPWD 481 (520)
T ss_dssp CCSSCBC
T ss_pred CcCCCCc
Confidence 9988653
No 67
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.72 E-value=5.4e-17 Score=184.87 Aligned_cols=244 Identities=14% Similarity=0.059 Sum_probs=174.1
Q ss_pred CccceeEEeecCCCccCCc-ccCCCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCC
Q 003950 497 PLNASLLSISTDETFSSNW-YDMEAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLK 575 (784)
Q Consensus 497 ~~~~r~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~ 575 (784)
+...+.+.++......... .-..+++++.+.|..+......|..|.++++|++|++++|.+. .++.. .+++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~-~l~~L~ 124 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-----NISCC-PMASLR 124 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-----EECSC-CCTTCS
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-----ccCcc-ccccCC
Confidence 3566777776544322211 1124677888888877666666778888888888888887542 12222 678889
Q ss_pred EEEecccCCCCc----cccccccCceeeeeeccccccccCccccccccCCce--EEEEEeCCCC--CCCCCcccCCCC--
Q 003950 576 RIRLEHVSLPSL----TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNL--LEIDIDYCND--LIELPDGLCDIV-- 645 (784)
Q Consensus 576 ~L~L~~n~l~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L--~~L~L~~~~~--~~~lp~~i~~l~-- 645 (784)
+|++++|.+..+ .+..+++|+.|++++|.+... .. ..+++| +.|++++|.+ .+..|..+..+.
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred EEECCCCCccccCchHhhcccCcccEEecCCCccccC---ch----hhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 999999888765 345678888888888876542 11 134444 9999999887 666665555433
Q ss_pred -------------------------------------------------------------------------------C
Q 003950 646 -------------------------------------------------------------------------------S 646 (784)
Q Consensus 646 -------------------------------------------------------------------------------~ 646 (784)
+
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 6
Q ss_pred CcEEEccCCCCCCCCchhc-----------------------------------------------------cCCCCCCE
Q 003950 647 IKKLRITNCHKLSALPEGI-----------------------------------------------------GKLVNLQM 673 (784)
Q Consensus 647 L~~L~L~~~~~~~~lp~~l-----------------------------------------------------~~l~~L~~ 673 (784)
|++|++++|.+.+.+|..+ +.+++|++
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~ 357 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence 7777777777666676654 56788888
Q ss_pred EEeecCCCCCCCcccccCCCCCCEEeccCCCCCC--ccchhhhCCCCCCEEeccCCCCCC-cChh-hhCCCCCCEEeCCC
Q 003950 674 LTLASCTDLSALPDTIGNLSNLNFLDISECLNIQ--ELPERIGELCSLKTLCLKGCSMFE-LPSS-ILNLENLEVVKCDE 749 (784)
Q Consensus 674 L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~~p~~l~~l~~L~~L~l~~n~l~~-lp~~-l~~l~~L~~L~l~~ 749 (784)
|++++|.+.+..|..++.+++|+.|++++|.+.+ .+|..++.+++|++|++++|.++. +|.. +..+++|+.|++++
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 8888888887788888888889999998886654 345667888899999999988886 7754 67788899999888
Q ss_pred Cchh
Q 003950 750 ETAY 753 (784)
Q Consensus 750 ~~~~ 753 (784)
|...
T Consensus 438 n~l~ 441 (562)
T 3a79_B 438 NMLT 441 (562)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=3.1e-17 Score=186.59 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=98.8
Q ss_pred ccceeEEeecCCCccCC-cccCCCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCE
Q 003950 498 LNASLLSISTDETFSSN-WYDMEAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKR 576 (784)
Q Consensus 498 ~~~r~lsi~~~~~~~~~-~~~~~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~ 576 (784)
...+.+.++........ ..-..+++++.+.|..+......|..|.++++|++|++++|.+..... ..++.+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS---SWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH---HHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH---HHhccCCCCcE
Confidence 45666766654322111 111346778888888776666666788888999999998874321110 12678888999
Q ss_pred EEecccCCCCc----cccccccCceeeeeecc-ccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEE
Q 003950 577 IRLEHVSLPSL----TTVRMKHLQNVSLVMCN-VDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLR 651 (784)
Q Consensus 577 L~L~~n~l~~~----~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 651 (784)
|++++|.+..+ ....+++|+.|++.+|. ...+.... +..+++|++|++++|.+.+..|..++.+++|++|+
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID----FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT----TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhh----hhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 99998888754 34567888888888886 33332222 23678888888888888777777777665555555
Q ss_pred ccCC
Q 003950 652 ITNC 655 (784)
Q Consensus 652 L~~~ 655 (784)
+++|
T Consensus 179 l~~n 182 (549)
T 2z81_A 179 LHLS 182 (549)
T ss_dssp EECS
T ss_pred cccC
Confidence 5544
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=188.33 Aligned_cols=179 Identities=22% Similarity=0.240 Sum_probs=124.9
Q ss_pred CCCCCCCEEEecccCCCCc-----cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCC-cccC
Q 003950 569 GALSNLKRIRLEHVSLPSL-----TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELP-DGLC 642 (784)
Q Consensus 569 ~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~ 642 (784)
..+++|++|++++|.++.. ....+++|+.|++++|.+...... +..+++|+.|++++|.+.+..| ..+.
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-----EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-----ccccCCCCEEEccCCccccccchhhhh
Confidence 4566677777777766543 233566777777777665544332 2267777788877776665544 4567
Q ss_pred CCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCC-CCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCE
Q 003950 643 DIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDL-SALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKT 721 (784)
Q Consensus 643 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 721 (784)
++++|++|++++|...+..|..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.+.+..|..++.+++|++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 7778888888877766667777777888888888877665 457777777888888888887766666777777888888
Q ss_pred EeccCCCCCCcCh-hhhCCCCCCEEeCCCCch
Q 003950 722 LCLKGCSMFELPS-SILNLENLEVVKCDEETA 752 (784)
Q Consensus 722 L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~ 752 (784)
|++++|.++.+|. .+.++++|+.|++++|..
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 8888887776654 467778888887776643
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=4.6e-17 Score=169.92 Aligned_cols=168 Identities=17% Similarity=0.241 Sum_probs=74.8
Q ss_pred cCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCC
Q 003950 568 FGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVS 646 (784)
Q Consensus 568 l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 646 (784)
+..+++|++|++++|.+..+ ....+++|+.|++++|.+..+.. ...+++|++|++++|.+.+ +|. +..+++
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~ 130 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA------IAGLQSIKTLDLTSTQITD-VTP-LAGLSN 130 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG------GTTCTTCCEEECTTSCCCC-CGG-GTTCTT
T ss_pred hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh------hcCCCCCCEEECCCCCCCC-chh-hcCCCC
Confidence 34444444444444444443 23344444444444444433210 1134455555555544332 222 445555
Q ss_pred CcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccC
Q 003950 647 IKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKG 726 (784)
Q Consensus 647 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 726 (784)
|++|++++|.+. .+|. ++.+++|++|++++|.+.+ ++. +..+++|+.|++++|.+.+ ++. +..+++|++|++++
T Consensus 131 L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 131 LQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKN 204 (308)
T ss_dssp CCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTT
T ss_pred CCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccC
Confidence 555555554322 2222 4445555555555543332 222 4455555555555543322 222 44455555555555
Q ss_pred CCCCCcChhhhCCCCCCEEeCCCC
Q 003950 727 CSMFELPSSILNLENLEVVKCDEE 750 (784)
Q Consensus 727 n~l~~lp~~l~~l~~L~~L~l~~~ 750 (784)
|.++.++. +..+++|+.|++++|
T Consensus 205 N~l~~~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 205 NQISDVSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp SCCCBCGG-GTTCTTCCEEEEEEE
T ss_pred CccCcccc-ccCCCCCCEEEccCC
Confidence 55554442 445555555554444
No 71
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=9.8e-17 Score=176.78 Aligned_cols=177 Identities=13% Similarity=0.121 Sum_probs=130.0
Q ss_pred cCCCCCCCEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCC
Q 003950 568 FGALSNLKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSI 647 (784)
Q Consensus 568 l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 647 (784)
++.+++|++|++++|.++.+....+++|+.|++.+|.+..+. ...+++|++|++++|.+.+ +| ++.+++|
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~-------l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L 235 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLD-------LNQNIQLTFLDCSSNKLTE-ID--VTPLTQL 235 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred cccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeec-------cccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence 556777777777777777776667777777777777766541 2267888888888887666 55 7788888
Q ss_pred cEEEccCCCCCCCCchhccCCC-------CCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchh--------
Q 003950 648 KKLRITNCHKLSALPEGIGKLV-------NLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPER-------- 712 (784)
Q Consensus 648 ~~L~L~~~~~~~~lp~~l~~l~-------~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~-------- 712 (784)
++|++++|.+.+..+..+.++. +|+.|++++|...+.+| ++.+++|+.|++++|...+.+|..
T Consensus 236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 8888888776554433343333 45566666666666666 467889999999999877776642
Q ss_pred hhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHHHH
Q 003950 713 IGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEYF 758 (784)
Q Consensus 713 l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 758 (784)
++.+++|++|++++|.++.++ +.++++|+.|++++|....++.+
T Consensus 314 l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~~L 357 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSV 357 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCTTG
T ss_pred hhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCcccc
Confidence 466789999999999999885 88999999999999987765433
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=1.3e-16 Score=160.06 Aligned_cols=199 Identities=19% Similarity=0.233 Sum_probs=151.0
Q ss_pred cccChhccCCCCCcEEEeecccc--cCCcCcCccccCCCCCCCEEEecccC-CCCc---cccccccCceeeeee-ccccc
Q 003950 535 YTLPKFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLKRIRLEHVS-LPSL---TTVRMKHLQNVSLVM-CNVDQ 607 (784)
Q Consensus 535 ~~~p~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~~L~l~~-~~~~~ 607 (784)
..+|. +. ++|++|++++|.+ +|.. .|..+++|++|++++|. ++.+ .+..+++|+.|++.+ |.+..
T Consensus 24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~-----~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 24 QRIPS-LP--PSTQTLKLIETHLRTIPSH-----AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp SSCCC-CC--TTCCEEEEESCCCSEECTT-----TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred cccCC-CC--CcccEEEEeCCcceEECHH-----HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 45565 33 3889999998754 2322 26788899999999996 7666 345778899999998 77766
Q ss_pred cccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCc---EEEccCCCCCCCCc-hhccCCCCCC-EEEeecCCCC
Q 003950 608 VVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIK---KLRITNCHKLSALP-EGIGKLVNLQ-MLTLASCTDL 682 (784)
Q Consensus 608 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~---~L~L~~~~~~~~lp-~~l~~l~~L~-~L~L~~~~~~ 682 (784)
+..... ..+++|++|++++|.+.+ +|. +..+++|+ +|++++|..+..+| ..+..+++|+ +|++++|.+.
T Consensus 96 i~~~~f----~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 96 IDPDAL----KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp ECTTSE----ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred cCHHHh----CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 544332 378899999999987665 776 88888888 99999982344454 5688899999 9999997765
Q ss_pred CCCcccccCCCCCCEEeccCCC-CCCccchhhhCC-CCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCC
Q 003950 683 SALPDTIGNLSNLNFLDISECL-NIQELPERIGEL-CSLKTLCLKGCSMFELPSSILNLENLEVVKCDEE 750 (784)
Q Consensus 683 ~~~p~~~~~l~~L~~L~l~~n~-~~~~~p~~l~~l-~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~ 750 (784)
.+|......++|+.|++++|. +....+..+..+ ++|+.|++++|.++.+|.. .+++|+.|++.++
T Consensus 170 -~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 -SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp -EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred -ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 666554445889999999995 444445567888 9999999999999998875 7889999998765
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=5.4e-17 Score=184.58 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=115.0
Q ss_pred CceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCcc---ccccccCce
Q 003950 521 PEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLT---TVRMKHLQN 597 (784)
Q Consensus 521 ~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~ 597 (784)
+.++.+.|..+......|..|.++++|++|++++|.+..... ..|+.+++|++|++++|.+.++. +..+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG---DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh---hhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 578888888887666678899999999999999985421110 12688999999999999999883 567899999
Q ss_pred eeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCC-cccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEE
Q 003950 598 VSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELP-DGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLT 675 (784)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~ 675 (784)
|++++|.+..+... ..+..+++|++|++++|...+.+| ..+.++++|++|++++|.+.+..|..++.+++|++|+
T Consensus 103 L~Ls~n~l~~~~~~---~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 103 LNLMGNPYQTLGVT---SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp EECTTCCCSSSCSS---CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred EECCCCcccccchh---hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 99999987654211 123478999999999998666665 5799999999999999988777777766544333333
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=170.76 Aligned_cols=199 Identities=18% Similarity=0.139 Sum_probs=139.4
Q ss_pred CCCCCcEEEeecccccCCcCcCcccc-CCCCCCCEEEecccCCCCc-------cccccccCceeeeeeccccccccCccc
Q 003950 543 KMDKLKVMIVTNYGFFPAELSNIQVF-GALSNLKRIRLEHVSLPSL-------TTVRMKHLQNVSLVMCNVDQVVQNSTF 614 (784)
Q Consensus 543 ~l~~L~~L~l~~~~~~~~~~~~l~~l-~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~~L~l~~~~~~~~~~~~~~ 614 (784)
.+++|++|++++|.+.......+ + ..+++|++|++++|.++.. ....+++|+.|++++|.+....+...
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~--~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~- 165 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLP--LEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV- 165 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCS--SSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC-
T ss_pred ccCceeEEEeeCCEeccchhhhh--hhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh-
Confidence 35668888888875422111110 1 6778888888888888763 22357788888888887765543332
Q ss_pred cccccCCceEEEEEeCCCCCCC--C--CcccCCCCCCcEEEccCCCCCCCCch----hccCCCCCCEEEeecCCCCCCCc
Q 003950 615 HFSDAFPNLLEIDIDYCNDLIE--L--PDGLCDIVSIKKLRITNCHKLSALPE----GIGKLVNLQMLTLASCTDLSALP 686 (784)
Q Consensus 615 ~~~~~l~~L~~L~L~~~~~~~~--l--p~~i~~l~~L~~L~L~~~~~~~~lp~----~l~~l~~L~~L~L~~~~~~~~~p 686 (784)
..+++|++|+|++|.+.+. + +..++.+++|++|++++|.+ ..+|. .++.+++|++|+|++|.+.+..|
T Consensus 166 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 166 ---RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp ---CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred ---ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 3678888888888876542 2 23346788888888888764 44443 24677888888888888777767
Q ss_pred ccccCC---CCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCch
Q 003950 687 DTIGNL---SNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETA 752 (784)
Q Consensus 687 ~~~~~l---~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~ 752 (784)
..+..+ ++|++|++++|.+. .+|..+. ++|++|++++|.++.+|. +..+++|+.|++++|..
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred hhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 777666 58888888888655 6676664 788888888888887765 67788888888888754
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=186.54 Aligned_cols=246 Identities=16% Similarity=0.147 Sum_probs=189.4
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-cccccccCcee
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKHLQNV 598 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L 598 (784)
+++++.+.+..+.. ..+|..+..+ +|++|++++|.+. .++ ...+++|+.|++++|.+... ....+++|+.|
T Consensus 281 l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~~~-----~l~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L 352 (570)
T 2z63_A 281 LTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCKFG-----QFP-TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352 (570)
T ss_dssp GTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCBCS-----SCC-BCBCSSCCEEEEESCBSCCBCCCCBCTTCCEE
T ss_pred cCcccEEEecCccc-hhhhhhhccC-CccEEeeccCccc-----ccC-cccccccCEEeCcCCccccccccccCCCCCEE
Confidence 46677777766643 3577777777 8888888876542 112 14677888888888887665 33678889999
Q ss_pred eeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCc-hhccCCCCCCEEEee
Q 003950 599 SLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALP-EGIGKLVNLQMLTLA 677 (784)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~ 677 (784)
++++|.+...... ......+++|++|++++|.+.+. |..+..+++|++|++++|.+.+..| ..+..+++|++|+++
T Consensus 353 ~l~~n~l~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 353 DLSRNGLSFKGCC--SQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp ECCSSCCBEEEEE--EHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred eCcCCccCccccc--cccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 9988877654210 11123688999999999876554 4448999999999999988666555 468899999999999
Q ss_pred cCCCCCCCcccccCCCCCCEEeccCCCCC-CccchhhhCCCCCCEEeccCCCCCCc-ChhhhCCCCCCEEeCCCCchhcH
Q 003950 678 SCTDLSALPDTIGNLSNLNFLDISECLNI-QELPERIGELCSLKTLCLKGCSMFEL-PSSILNLENLEVVKCDEETAYQW 755 (784)
Q Consensus 678 ~~~~~~~~p~~~~~l~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~~~~ 755 (784)
+|.+.+..|..+..+++|+.|++++|.+. +.+|..++.+++|++|++++|.++.+ |..+.++++|+.|++++|.....
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 99988888999999999999999999876 57888999999999999999999966 77899999999999999877654
Q ss_pred H--HHhhcCCCcE-EeeeccccCcc
Q 003950 756 E--YFQLGQAKFR-IEVIQEDINLY 777 (784)
Q Consensus 756 ~--~~~~~lp~L~-i~~~~~~~~~~ 777 (784)
. .+.. +|+|+ ++...+++.+.
T Consensus 510 ~~~~~~~-l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 510 PDGIFDR-LTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CTTTTTT-CTTCCEEECCSSCBCCC
T ss_pred CHHHhhc-ccCCcEEEecCCcccCC
Confidence 2 2334 88884 56666665543
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=8.6e-18 Score=175.94 Aligned_cols=226 Identities=13% Similarity=0.024 Sum_probs=168.5
Q ss_pred CCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCccc-----cccccCceeeeeeccccccccCccccccc
Q 003950 544 MDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLTT-----VRMKHLQNVSLVMCNVDQVVQNSTFHFSD 618 (784)
Q Consensus 544 l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 618 (784)
...++.|.+.++......+..+..+..+++|++|++++|.+.+..+ ..+++|++|++++|.+.............
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3346777777654322222222222345679999999999876522 56889999999999887643322111112
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCC--Cc--hhccCCCCCCEEEeecCCCCCCCcc----ccc
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSA--LP--EGIGKLVNLQMLTLASCTDLSALPD----TIG 690 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~--lp--~~l~~l~~L~~L~L~~~~~~~~~p~----~~~ 690 (784)
.+++|++|++++|.+.+..|..++++++|++|++++|.+.+. ++ ..++.+++|++|++++|.+. .+|. .++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 689999999999999888888999999999999999986542 33 23468999999999998764 4444 357
Q ss_pred CCCCCCEEeccCCCCCCccchhhhCC---CCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHHHHhhcCCCcE-
Q 003950 691 NLSNLNFLDISECLNIQELPERIGEL---CSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWEYFQLGQAKFR- 766 (784)
Q Consensus 691 ~l~~L~~L~l~~n~~~~~~p~~l~~l---~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~lp~L~- 766 (784)
.+++|++|++++|.+.+..|..++.+ ++|++|++++|.++.+|..+. ++|+.|++++|....++.+. .+|+|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~-~l~~L~~ 298 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPD-ELPEVDN 298 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTT-SCCCCSC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhh-hCCCccE
Confidence 88999999999998888778888776 699999999999999998774 89999999999887764443 377774
Q ss_pred Eeeeccc
Q 003950 767 IEVIQED 773 (784)
Q Consensus 767 i~~~~~~ 773 (784)
+....|+
T Consensus 299 L~L~~N~ 305 (310)
T 4glp_A 299 LTLDGNP 305 (310)
T ss_dssp EECSSTT
T ss_pred EECcCCC
Confidence 4444443
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=5e-17 Score=170.22 Aligned_cols=229 Identities=13% Similarity=0.074 Sum_probs=172.1
Q ss_pred ccChhccCCCCCcEEEeecccc----cCCcCc-CccccCCCCCCCEEEecccCCCCc-c--c--cccccCceeeeeeccc
Q 003950 536 TLPKFLEKMDKLKVMIVTNYGF----FPAELS-NIQVFGALSNLKRIRLEHVSLPSL-T--T--VRMKHLQNVSLVMCNV 605 (784)
Q Consensus 536 ~~p~~l~~l~~L~~L~l~~~~~----~~~~~~-~l~~l~~l~~L~~L~L~~n~l~~~-~--~--~~l~~L~~L~l~~~~~ 605 (784)
.+|..+... |+.|++++|.+ +|.... ..-.+..+++|++|++++|.+++. . . ..+++|+.|++++|.+
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 567666544 77777777643 222210 000012588999999999999864 1 1 5789999999999998
Q ss_pred cccccCcccccc-ccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCC--Cchhc--cCCCCCCEEEeecCC
Q 003950 606 DQVVQNSTFHFS-DAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSA--LPEGI--GKLVNLQMLTLASCT 680 (784)
Q Consensus 606 ~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~--lp~~l--~~l~~L~~L~L~~~~ 680 (784)
... +.....+. ..+++|++|++++|.+.+..|..++++++|++|++++|.+.+. +|..+ +.+++|++|++++|.
T Consensus 134 ~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 134 ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 876 32222111 1138999999999998888889999999999999999987665 35555 899999999999987
Q ss_pred CCC--CCc-ccccCCCCCCEEeccCCCCCCccc-hhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCCchhcHH
Q 003950 681 DLS--ALP-DTIGNLSNLNFLDISECLNIQELP-ERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEETAYQWE 756 (784)
Q Consensus 681 ~~~--~~p-~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~ 756 (784)
+.+ .++ ..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.++.+|..+. ++|+.|++++|.....+
T Consensus 213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCC
T ss_pred CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCCh
Confidence 763 233 344688999999999998877664 456678999999999999999998876 89999999999887765
Q ss_pred HHhhcCCCcEEeee
Q 003950 757 YFQLGQAKFRIEVI 770 (784)
Q Consensus 757 ~~~~~lp~L~i~~~ 770 (784)
.+.. +|+|+....
T Consensus 291 ~~~~-l~~L~~L~L 303 (312)
T 1wwl_A 291 SPDE-LPQVGNLSL 303 (312)
T ss_dssp CTTT-SCEEEEEEC
T ss_pred hHhh-CCCCCEEec
Confidence 5544 888864433
No 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.68 E-value=6.7e-17 Score=177.95 Aligned_cols=208 Identities=17% Similarity=0.124 Sum_probs=102.1
Q ss_pred ceEEEEEecCCCCcccChhccCCCCCcEEEeecc---cccCCcCcCcccc---------------------------CCC
Q 003950 522 EVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNY---GFFPAELSNIQVF---------------------------GAL 571 (784)
Q Consensus 522 ~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~---~~~~~~~~~l~~l---------------------------~~l 571 (784)
.++.+.+..+.. ..+|.+++++++|++|++++| +.+|..++.+..+ ...
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~ 90 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELP 90 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCc
Confidence 344444544444 567777777777777777765 3455554432211 112
Q ss_pred CCCCEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEE
Q 003950 572 SNLKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLR 651 (784)
Q Consensus 572 ~~L~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 651 (784)
++|++|++++|.+++++ ..+.+|+.|++++|.+..+.. ..++|++|++++|.+.+ +| .++++++|++|+
T Consensus 91 ~~L~~L~l~~n~l~~lp-~~~~~L~~L~l~~n~l~~l~~--------~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALSD--------LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp TTCSEEECCSSCCSSCC-CCCTTCCEEECCSSCCSCCCS--------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCccc-cccCCCcEEECCCCccCcccC--------CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 45666666666665542 234566666666655543211 12567777777776554 66 477777777777
Q ss_pred ccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCC
Q 003950 652 ITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFE 731 (784)
Q Consensus 652 L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 731 (784)
+++|.+. .+|.. ..+|++|++++|.+.+ +| .++.+++|+.|++++|.+.+ +|.. .++|++|++++|.++.
T Consensus 160 l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 160 VDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEE 229 (454)
T ss_dssp CCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSS
T ss_pred CCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCc
Confidence 7776543 35543 2466677776655443 44 46666666666666664432 3321 1355555555555555
Q ss_pred cChhhhCCCCCCEEeCCCCch
Q 003950 732 LPSSILNLENLEVVKCDEETA 752 (784)
Q Consensus 732 lp~~l~~l~~L~~L~l~~~~~ 752 (784)
+| .+..+++|+.|++++|..
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCC
T ss_pred cc-ccCCCCCCCEEECCCCcC
Confidence 55 245555555555555443
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=5.9e-18 Score=183.23 Aligned_cols=247 Identities=17% Similarity=0.124 Sum_probs=180.3
Q ss_pred CCceEEEEEecCCCCcc----cChhccCCCCCcEEEeecccc------cCCcCcCc-cccCCCCCCCEEEecccCCCCc-
Q 003950 520 APEVKVVVLNVRTKKYT----LPKFLEKMDKLKVMIVTNYGF------FPAELSNI-QVFGALSNLKRIRLEHVSLPSL- 587 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~----~p~~l~~l~~L~~L~l~~~~~------~~~~~~~l-~~l~~l~~L~~L~L~~n~l~~~- 587 (784)
++.++.+.|..+..... ++..+..+++|++|++++|.. +|..+..+ ..+..+++|++|+|++|.++..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 45566666666544333 445578999999999998622 23222211 1247889999999999999873
Q ss_pred ------cccccccCceeeeeeccccccccCccccccccC---------CceEEEEEeCCCCC-CCCC---cccCCCCCCc
Q 003950 588 ------TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAF---------PNLLEIDIDYCNDL-IELP---DGLCDIVSIK 648 (784)
Q Consensus 588 ------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l---------~~L~~L~L~~~~~~-~~lp---~~i~~l~~L~ 648 (784)
....+++|+.|++++|.+..............+ ++|++|++++|.+. ..+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 345678999999999987543222222111123 89999999999876 3444 4677889999
Q ss_pred EEEccCCCCCC-----CCchhccCCCCCCEEEeecCCCC----CCCcccccCCCCCCEEeccCCCCCCc----cchhh--
Q 003950 649 KLRITNCHKLS-----ALPEGIGKLVNLQMLTLASCTDL----SALPDTIGNLSNLNFLDISECLNIQE----LPERI-- 713 (784)
Q Consensus 649 ~L~L~~~~~~~-----~lp~~l~~l~~L~~L~L~~~~~~----~~~p~~~~~l~~L~~L~l~~n~~~~~----~p~~l-- 713 (784)
+|++++|.+.. ..|..+..+++|++|+|++|.+. ..+|..+..+++|++|+|++|.+... +|..+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999987542 34447889999999999998874 66788899999999999999987654 56666
Q ss_pred hCCCCCCEEeccCCCCCC-----cChhh-hCCCCCCEEeCCCCchhc----HHHHhhcCCCcE
Q 003950 714 GELCSLKTLCLKGCSMFE-----LPSSI-LNLENLEVVKCDEETAYQ----WEYFQLGQAKFR 766 (784)
Q Consensus 714 ~~l~~L~~L~l~~n~l~~-----lp~~l-~~l~~L~~L~l~~~~~~~----~~~~~~~lp~L~ 766 (784)
+.+++|++|++++|.++. +|..+ .++++|+.|++++|.... ...+...+|+++
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 349999999999999986 88888 679999999999886543 244444455543
No 80
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.67 E-value=3e-15 Score=159.65 Aligned_cols=288 Identities=12% Similarity=0.072 Sum_probs=177.1
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC------CHHH
Q 003950 132 APDPPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP------NVKG 205 (784)
Q Consensus 132 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~------~~~~ 205 (784)
++..+..|+||+.++++|.+++..+ +++.|+|++|+|||||++++++. . + ++|+++.... +...
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~--~----~--~~~~~~~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNE--R----P--GILIDCRELYAERGHITREE 76 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH--S----S--EEEEEHHHHHHTTTCBCHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHH--c----C--cEEEEeecccccccCCCHHH
Confidence 3445678999999999999998764 79999999999999999999873 2 1 5688775432 5666
Q ss_pred HHHHHHHHcCCC----------------CCC--CCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch-------HHHh-
Q 003950 206 IVQKVYQHKGYA----------------VPE--FQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE-------SLLQ- 259 (784)
Q Consensus 206 ~~~~i~~~l~~~----------------~~~--~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~-------~~~~- 259 (784)
++..+.+.+... ... ........+.+....+ ..++++||+||++.... .++.
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE--ELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH--HHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh--ccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 777776655420 000 0112222223322221 12389999999976332 2222
Q ss_pred --hhhccCCCceEEEeccccc--c------c-------C-CCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHH
Q 003950 260 --KFKFQLPYYKILVTSRSVF--P------Q-------F-GSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKI 321 (784)
Q Consensus 260 --~~~~~~~gs~iivTtR~~~--~------~-------~-~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i 321 (784)
.+....++.++|+|++... . . . ...+.+.+|+.+|+.+++.......+. ...++.+..|
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---~~~~~~~~~i 231 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---DVPENEIEEA 231 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 2222346788999876531 0 1 1 126889999999999999765422221 1236788999
Q ss_pred HHHcCCchhHHHHHHhhhCC-CChHHHHHHHHhhcccCcccCChHHHHHHHHHHHHhc---cHHHHHHHhhcCCCCCCcc
Q 003950 322 LRACKGCPLALTVVGGSLCG-KHPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDAL---NNEVKECYMDLCSFPEDQR 397 (784)
Q Consensus 322 ~~~~~g~PLai~~~~~~L~~-~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cfl~~a~fp~~~~ 397 (784)
++.|+|+|+++..++..+.. .+...+ +.+.. +.+...+.-.+..+ ++..+..+..+|+ + .
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~ 295 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTL---------EVAKGLIMGELEELRRRSPRYVDILRAIAL---G-Y 295 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHH---------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-C
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHH---HHHHH---------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-C
Confidence 99999999999998865421 222211 11111 11222222233344 7889999999987 2 2
Q ss_pred cChHHHHHHHHHhh-ccChHHHHHHHHHhhchhhhhhhhhhcccCCCCCCCCcchhhhhHHHHHHHH
Q 003950 398 IPITALVDMWMELY-ELVDELFAIANLHELSNLNLANCVATRKYASDDSCYNDHFVMQHDLLRELAI 463 (784)
Q Consensus 398 i~~~~Li~~W~a~~-~~~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~a~ 463 (784)
++...+........ .++.. ....+++.|.+.++|... +..+...|++++++.+
T Consensus 296 ~~~~~l~~~~~~~~~~~~~~-~~~~~l~~L~~~gli~~~------------~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 NRWSLIRDYLAVKGTKIPEP-RLYALLENLKKMNWIVEE------------DNTYKIADPVVATVLR 349 (350)
T ss_dssp CSHHHHHHHHHHTTCCCCHH-HHHHHHHHHHHTTSEEEE------------TTEEEESSHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhCCCEEec------------CCEEEEecHHHHHHHc
Confidence 35455544432221 34444 778999999999999642 1123344888888753
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=5.1e-16 Score=162.02 Aligned_cols=189 Identities=15% Similarity=0.219 Sum_probs=155.0
Q ss_pred cCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCC
Q 003950 568 FGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVS 646 (784)
Q Consensus 568 l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 646 (784)
+..+++|+.|++++|.+..+ ....+++|+.|++++|.+..+.. ...+++|++|++++|.+.+ +| .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKN-VS-AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSC-CG-GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCC-ch-hhcCCCC
Confidence 44577888888888888776 55678999999999998877654 2378999999999997654 44 5899999
Q ss_pred CcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccC
Q 003950 647 IKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKG 726 (784)
Q Consensus 647 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 726 (784)
|++|++++|.+. .+|. +..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+.. ++. +..+++|+.|++++
T Consensus 109 L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 109 IKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADD 182 (308)
T ss_dssp CCEEECTTSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCS
T ss_pred CCEEECCCCCCC-Cchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCC
Confidence 999999998754 4554 8999999999999987654 444 8899999999999996554 554 89999999999999
Q ss_pred CCCCCcChhhhCCCCCCEEeCCCCchhcHHHHhhcCCCcE-Eeeecc
Q 003950 727 CSMFELPSSILNLENLEVVKCDEETAYQWEYFQLGQAKFR-IEVIQE 772 (784)
Q Consensus 727 n~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~lp~L~-i~~~~~ 772 (784)
|.++.+|. +..+++|+.|++++|....+..+.. +|+|+ ++...+
T Consensus 183 n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~l~~-l~~L~~L~l~~N 227 (308)
T 1h6u_A 183 NKISDISP-LASLPNLIEVHLKNNQISDVSPLAN-TSNLFIVTLTNQ 227 (308)
T ss_dssp SCCCCCGG-GGGCTTCCEEECTTSCCCBCGGGTT-CTTCCEEEEEEE
T ss_pred CccCcChh-hcCCCCCCEEEccCCccCccccccC-CCCCCEEEccCC
Confidence 99998876 8999999999999998877766655 88885 343333
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=1.7e-15 Score=171.87 Aligned_cols=226 Identities=19% Similarity=0.150 Sum_probs=150.1
Q ss_pred ccceeEEeecCCCccCCcccCCCCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEE
Q 003950 498 LNASLLSISTDETFSSNWYDMEAPEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRI 577 (784)
Q Consensus 498 ~~~r~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L 577 (784)
...+.|.+..+...... ..+++++.+.|+.+.. ..+|. .+++|++|++++|.+. .++. .+++|+.|
T Consensus 61 ~~L~~L~L~~N~l~~lp---~~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~l~-----~l~~--~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLP---ALPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFSNPLT-----HLPA--LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCSCCC---CCCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECSCCCC-----CCCC--CCTTCCEE
T ss_pred CCCcEEEecCCCCCCCC---CcCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcCCcCC-----CCCC--CCCCcCEE
Confidence 46677777655322111 1467888888887654 35665 7788999999887431 1111 35667777
Q ss_pred EecccCCCCccccccccCceeeeeeccccccccCcc------------ccccccCCceEEEEEeCCCCCCCCCcccCCCC
Q 003950 578 RLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNST------------FHFSDAFPNLLEIDIDYCNDLIELPDGLCDIV 645 (784)
Q Consensus 578 ~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------------~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~ 645 (784)
++++|.++.++. .+++|+.|++++|.+..+..... ..+...+++|+.|++++|.+.+ +|.. ++
T Consensus 127 ~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~---~~ 201 (622)
T 3g06_A 127 WIFGNQLTSLPV-LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTL---PS 201 (622)
T ss_dssp ECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred ECCCCCCCcCCC-CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCc---cc
Confidence 777777766533 34677777777776654322100 0000123566666666665443 4432 35
Q ss_pred CCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEecc
Q 003950 646 SIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLK 725 (784)
Q Consensus 646 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 725 (784)
+|+.|++++|. +..+|. .+++|++|++++|.+. .+| ..+++|+.|++++|.+ ..+|. .+++|+.|+++
T Consensus 202 ~L~~L~L~~N~-l~~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L-~~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 202 ELYKLWAYNNR-LTSLPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRL-TSLPM---LPSGLLSLSVY 269 (622)
T ss_dssp TCCEEECCSSC-CSSCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCC-SCCCC---CCTTCCEEECC
T ss_pred hhhEEECcCCc-ccccCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCC-CcCCc---ccccCcEEeCC
Confidence 67777777665 334553 2478999999987655 466 4568899999999854 46775 67899999999
Q ss_pred CCCCCCcChhhhCCCCCCEEeCCCCchhc
Q 003950 726 GCSMFELPSSILNLENLEVVKCDEETAYQ 754 (784)
Q Consensus 726 ~n~l~~lp~~l~~l~~L~~L~l~~~~~~~ 754 (784)
+|.++.+|..+.++++|+.|++++|....
T Consensus 270 ~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 270 RNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp SSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 99999999999999999999999987643
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=1.2e-15 Score=154.40 Aligned_cols=155 Identities=17% Similarity=0.126 Sum_probs=109.9
Q ss_pred CCCEEEecccCCCCc---cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcE
Q 003950 573 NLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKK 649 (784)
Q Consensus 573 ~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 649 (784)
+++.|++++|.++.+ .+..+++|+.|++++|.+..+.+.. +..+++|++|+|++|.+.+..+..+..+++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV----FDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH----hccCCcCCEEECCCCcccccChhHhcccCCCCE
Confidence 445555555554444 2234455555555555554433322 226788888888888777666677888899999
Q ss_pred EEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCC
Q 003950 650 LRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSM 729 (784)
Q Consensus 650 L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l 729 (784)
|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..++.+++|++|+|++|.+.+..+..+..+++|+.|++++|++
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 99998876554445568889999999998877655555788889999999999877766666788889999999999987
Q ss_pred CC
Q 003950 730 FE 731 (784)
Q Consensus 730 ~~ 731 (784)
+.
T Consensus 192 ~c 193 (251)
T 3m19_A 192 DC 193 (251)
T ss_dssp CT
T ss_pred eC
Confidence 63
No 84
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=5e-16 Score=150.69 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=107.8
Q ss_pred cccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCC
Q 003950 590 VRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLV 669 (784)
Q Consensus 590 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 669 (784)
..+++|+.|++.+|.+..+.. ...+++|++|++++|.. . .+..+..+++|++|++++|.+.+..|..++.++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~------l~~l~~L~~L~l~~n~~-~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTG------IEYAHNIKDLTINNIHA-T-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTT------GGGCTTCSEEEEESCCC-S-CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred hhcCCccEEeccCCCccChHH------HhcCCCCCEEEccCCCC-C-cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 345556666666655543321 12567777777777732 2 234577788888888888776666677777888
Q ss_pred CCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCC
Q 003950 670 NLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDE 749 (784)
Q Consensus 670 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~ 749 (784)
+|++|++++|.+....|..+..+++|++|++++|..++.+| .+..+++|++|++++|.++.++ .+..+++|+.|++++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECB
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeC
Confidence 88888888877776677777888888888888876566666 5778888888888888888776 677888888888877
Q ss_pred Cch
Q 003950 750 ETA 752 (784)
Q Consensus 750 ~~~ 752 (784)
|..
T Consensus 191 N~i 193 (197)
T 4ezg_A 191 QTI 193 (197)
T ss_dssp C--
T ss_pred ccc
Confidence 754
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=2.9e-15 Score=169.97 Aligned_cols=217 Identities=16% Similarity=0.132 Sum_probs=149.2
Q ss_pred CceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCccccccccCceeee
Q 003950 521 PEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKHLQNVSL 600 (784)
Q Consensus 521 ~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~l 600 (784)
++++.+.|..+... .+|. .+++|++|++++|.+. .++. .+++|++|++++|.++.+.. .+++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-----~lp~--~l~~L~~L~Ls~N~l~~l~~-~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-----SLPV--LPPGLLELSIFSNPLTHLPA-LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-----CCCC--CCTTCCEEEECSCCCCCCCC-CCTTCCEEEC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-----cCCC--CCCCCCEEECcCCcCCCCCC-CCCCcCEEEC
Confidence 67888888877543 5666 6789999999997542 2222 67899999999999988755 7889999999
Q ss_pred eeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccC---CC--------------CCCcEEEccCCCCCCCCch
Q 003950 601 VMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLC---DI--------------VSIKKLRITNCHKLSALPE 663 (784)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~---~l--------------~~L~~L~L~~~~~~~~lp~ 663 (784)
.+|.+..+.. .+++|++|++++|.+.+ +|..+. .+ ++|++|++++|.+ ..+|.
T Consensus 129 ~~N~l~~lp~--------~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l-~~l~~ 198 (622)
T 3g06_A 129 FGNQLTSLPV--------LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL-ASLPT 198 (622)
T ss_dssp CSSCCSCCCC--------CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC-SCCCC
T ss_pred CCCCCCcCCC--------CCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCC-CCCCC
Confidence 9998776533 35788888888886554 343222 11 5556666665543 23443
Q ss_pred hccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCC
Q 003950 664 GIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLE 743 (784)
Q Consensus 664 ~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~ 743 (784)
.+++|+.|++++|.+. .+|. .+++|+.|++++|.+. .+| ..+++|++|++++|.|+.+|. .+++|+
T Consensus 199 ---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~ 264 (622)
T 3g06_A 199 ---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPM---LPSGLL 264 (622)
T ss_dssp ---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC---CCTTCC
T ss_pred ---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCcCCc---ccccCc
Confidence 2355666666654433 3443 2477888999888544 466 456889999999999998887 678899
Q ss_pred EEeCCCCchhcHHHHhhcCCCcE-Eeeeccc
Q 003950 744 VVKCDEETAYQWEYFQLGQAKFR-IEVIQED 773 (784)
Q Consensus 744 ~L~l~~~~~~~~~~~~~~lp~L~-i~~~~~~ 773 (784)
.|++++|.....+.....+|+|+ ++...|+
T Consensus 265 ~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 265 SLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred EEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 99999987766543233488885 4444443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=6.6e-16 Score=154.99 Aligned_cols=194 Identities=12% Similarity=0.122 Sum_probs=152.8
Q ss_pred CCCCEEEecccCCCCc---cccccccCceeeeeecc-ccccccCccccccccCCceEEEEEeC-CCCCCCCCcccCCCCC
Q 003950 572 SNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCN-VDQVVQNSTFHFSDAFPNLLEIDIDY-CNDLIELPDGLCDIVS 646 (784)
Q Consensus 572 ~~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~lp~~i~~l~~ 646 (784)
.+|++|++++|.++.+ .+..+++|+.|++++|. +..+.+..+ ..+++|++|++++ |.+....+..+.++++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f----~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF----YNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE----ESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc----CCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 4899999999999877 34578899999999996 766654433 3789999999998 7666655678899999
Q ss_pred CcEEEccCCCCCCCCchhccCCCCCC---EEEeecC-CCCCCCcccccCCCCCC-EEeccCCCCCCccchhhhCCCCCCE
Q 003950 647 IKKLRITNCHKLSALPEGIGKLVNLQ---MLTLASC-TDLSALPDTIGNLSNLN-FLDISECLNIQELPERIGELCSLKT 721 (784)
Q Consensus 647 L~~L~L~~~~~~~~lp~~l~~l~~L~---~L~L~~~-~~~~~~p~~~~~l~~L~-~L~l~~n~~~~~~p~~l~~l~~L~~ 721 (784)
|++|++++|.+. .+|. ++.+++|+ +|++++| .+.+..+..+..+++|+ .|++++|.+. .+|......++|+.
T Consensus 107 L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 107 LKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA 183 (239)
T ss_dssp CCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEE
T ss_pred CCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCE
Confidence 999999998754 4786 88899998 9999998 55444445689999999 9999999665 67765555589999
Q ss_pred EeccCCC-CCCcCh-hhhCC-CCCCEEeCCCCchhcHHHHhhcCCCcEEeeecccc
Q 003950 722 LCLKGCS-MFELPS-SILNL-ENLEVVKCDEETAYQWEYFQLGQAKFRIEVIQEDI 774 (784)
Q Consensus 722 L~l~~n~-l~~lp~-~l~~l-~~L~~L~l~~~~~~~~~~~~~~lp~L~i~~~~~~~ 774 (784)
|++++|. ++.+|. .+..+ ++|+.|++++|.....+.. .+++|+.....+++
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 9999995 998864 57888 9999999999877654332 36666555555444
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=4.2e-17 Score=176.49 Aligned_cols=237 Identities=9% Similarity=0.079 Sum_probs=176.1
Q ss_pred cccChhccCCCCCcEEEeecccccCCcCcCc-cccCCCCCCCEEEecccCCCCcc-------------ccccccCceeee
Q 003950 535 YTLPKFLEKMDKLKVMIVTNYGFFPAELSNI-QVFGALSNLKRIRLEHVSLPSLT-------------TVRMKHLQNVSL 600 (784)
Q Consensus 535 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~l~~L~~L~L~~n~l~~~~-------------~~~l~~L~~L~l 600 (784)
..++..+..+++|++|++++|.+.......+ ..+..+++|++|+|++|.+..+. ...+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 4577889999999999999985533222111 12678899999999998665431 146789999999
Q ss_pred eeccccccccCccccccccCCceEEEEEeCCCCCCCCC----cccCCC---------CCCcEEEccCCCCC-CCCc---h
Q 003950 601 VMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELP----DGLCDI---------VSIKKLRITNCHKL-SALP---E 663 (784)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp----~~i~~l---------~~L~~L~L~~~~~~-~~lp---~ 663 (784)
++|.+..............+++|++|+|++|.+....+ ..+..+ ++|++|++++|.+. ..+| .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 99987653211122223478999999999998754333 333344 89999999999865 3455 4
Q ss_pred hccCCCCCCEEEeecCCCCC-----CCcccccCCCCCCEEeccCCCCC----CccchhhhCCCCCCEEeccCCCCCC---
Q 003950 664 GIGKLVNLQMLTLASCTDLS-----ALPDTIGNLSNLNFLDISECLNI----QELPERIGELCSLKTLCLKGCSMFE--- 731 (784)
Q Consensus 664 ~l~~l~~L~~L~L~~~~~~~-----~~p~~~~~l~~L~~L~l~~n~~~----~~~p~~l~~l~~L~~L~l~~n~l~~--- 731 (784)
.+..+++|++|++++|.+.. ..|..+..+++|+.|+|++|.+. ..+|..+..+++|++|++++|.++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 67789999999999987652 24447889999999999999764 6788889999999999999999984
Q ss_pred --cChhhh--CCCCCCEEeCCCCchhc-----HHH-HhhcCCCcEEeeec
Q 003950 732 --LPSSIL--NLENLEVVKCDEETAYQ-----WEY-FQLGQAKFRIEVIQ 771 (784)
Q Consensus 732 --lp~~l~--~l~~L~~L~l~~~~~~~-----~~~-~~~~lp~L~i~~~~ 771 (784)
+|..+. ++++|+.|++++|.... .+. +...+|+|+.....
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 467774 49999999999997765 333 32447888644433
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=1.7e-15 Score=156.52 Aligned_cols=175 Identities=18% Similarity=0.245 Sum_probs=122.6
Q ss_pred hccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccc
Q 003950 540 FLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSD 618 (784)
Q Consensus 540 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 618 (784)
.+..+++|+.|++++|++ ..++.+..+++|++|++++|.++.+ ....+++|+.|++++|.+..+.. ..
T Consensus 41 ~~~~l~~L~~L~l~~~~i-----~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~------l~ 109 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDI-----KSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS------LK 109 (291)
T ss_dssp CHHHHHTCCEEECTTSCC-----CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG------GT
T ss_pred chhhcCcccEEEccCCCc-----ccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh------hc
Confidence 345688888888888643 2233467788888888888888777 35567778888888877665422 23
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
.+++|++|++++|.+.. + ..+..+++|++|++++|.+.+ + ..++.+++|++|++++|.+.+..| +..+++|+.|
T Consensus 110 ~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp TCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 67788888888876554 3 347777888888888776443 3 467778888888888776554433 7778888888
Q ss_pred eccCCCCCCccchhhhCCCCCCEEeccCCCCCCcC
Q 003950 699 DISECLNIQELPERIGELCSLKTLCLKGCSMFELP 733 (784)
Q Consensus 699 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp 733 (784)
++++|.+. .+| .+..+++|+.|++++|.++..|
T Consensus 184 ~L~~N~i~-~l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 184 YLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ECCSSCCC-BCG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred ECCCCcCC-CCh-hhccCCCCCEEECcCCcccCCc
Confidence 88887543 444 3777888888888888776554
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=1.2e-14 Score=158.69 Aligned_cols=285 Identities=18% Similarity=0.112 Sum_probs=176.6
Q ss_pred CCCCCCCCCchhHHHHHHH-H----h--CCcEEEEE--EcCCCCcHHHHHHHHhcccccccc-----cCCceEEEEeCCC
Q 003950 135 PPPVTPGLDVPLQELKLEL-F----K--DGRQVIVV--SAPGGYGKTTLVKKLCKDDQVLGK-----FKDNIFFVTVSQT 200 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L-~----~--~~~~vv~I--~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~~wv~~~~~ 200 (784)
.+..++||+.+++++.+++ . . ...+.+.| +|++|+||||||+.+++ ..... ++..++|+++...
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCCC
Confidence 3467999999999999998 5 2 34567777 99999999999999998 33332 3444668887777
Q ss_pred CCHHHHHHHHHHHcCCCCCCC-CChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc------hHHH----hhhhcc---C-
Q 003950 201 PNVKGIVQKVYQHKGYAVPEF-QTDEDAINDLERLLKPIRPEAILLVLDDVWSGS------ESLL----QKFKFQ---L- 265 (784)
Q Consensus 201 ~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~------~~~~----~~~~~~---~- 265 (784)
.+...++..++.+++...+.. .........+...+. -.+++++|||||++... ...+ ..+... .
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY-VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH-HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 788999999999987653321 122333444444442 13779999999997532 1222 222211 1
Q ss_pred -CCceEEEeccccc-------------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcC-----
Q 003950 266 -PYYKILVTSRSVF-------------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACK----- 326 (784)
Q Consensus 266 -~gs~iivTtR~~~-------------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~----- 326 (784)
....+|+||+... ......+.+++|+.++++++|...+..... .....++.+..|++.|+
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTS
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccC
Confidence 3344787886431 011224899999999999999765421111 11223678899999999
Q ss_pred -CchhHHHHHHhhh------CCC---ChHHHHHHHHhhcccCcccCChHHHHHHHHHHHHhccHHHHHHHhhcCCCC--C
Q 003950 327 -GCPLALTVVGGSL------CGK---HPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDALNNEVKECYMDLCSFP--E 394 (784)
Q Consensus 327 -g~PLai~~~~~~L------~~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp--~ 394 (784)
|.|..+..+.... .+. +.+.+...+..... ...+.-++..||.+.+.++..+|.+. .
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-----------~~~~~~~l~~l~~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-----------ASIQTHELEALSIHELIILRLIAEATLGG 324 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-----------------CCSSSSSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-----------cchHHHHHHcCCHHHHHHHHHHHHHHhcC
Confidence 9997665544321 111 12233322222110 11223345678999999998888654 2
Q ss_pred CcccChHHHHHHHHHhh----c---cChHHHHHHHHHhhchhhhhhhh
Q 003950 395 DQRIPITALVDMWMELY----E---LVDELFAIANLHELSNLNLANCV 435 (784)
Q Consensus 395 ~~~i~~~~Li~~W~a~~----~---~~~~~~~~~~l~~L~~~sli~~~ 435 (784)
+..++...+...+.... . +.. .....++++|+..+||...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMYNVKPRGY-TQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHSCCCCCCH-HHHHHHHHHHHHTTSEEEE
T ss_pred CCCccHHHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHhCCCEEee
Confidence 33556666655553211 1 222 3677899999999999753
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=2e-15 Score=146.47 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=94.5
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
.+++|++|++++|.+.+..|..++.+++|++|++++|.+....|..++.+++|++|++++|...+.+| .+..+++|+.|
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence 68899999999998887788889999999999999998887788899999999999999988667777 68999999999
Q ss_pred eccCCCCCCccchhhhCCCCCCEEeccCCCCC
Q 003950 699 DISECLNIQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 699 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
++++|.+.. ++ .+..+++|++|++++|.+.
T Consensus 165 ~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 165 NIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 999996554 55 7889999999999999875
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.7e-16 Score=168.34 Aligned_cols=225 Identities=14% Similarity=0.164 Sum_probs=163.7
Q ss_pred ChhccCC--CCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc----cccccccCceeeeeeccccccccC
Q 003950 538 PKFLEKM--DKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL----TTVRMKHLQNVSLVMCNVDQVVQN 611 (784)
Q Consensus 538 p~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~L~~L~l~~~~~~~~~~~ 611 (784)
|..+..+ ++++.|++++|.+.... ..+..+++|++|++++|.++.. ....+++|++|++.+|.+......
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~----~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 136 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPL----AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 136 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCC----CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccc----hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence 4556666 78888888886432111 1145678899999998887653 345678899999988875533222
Q ss_pred ccccccccCCceEEEEEeCCC-CCC-CCCcccCCCCCCcEEEccCC-CCCCC-CchhccCCC-CCCEEEeecCC--CC-C
Q 003950 612 STFHFSDAFPNLLEIDIDYCN-DLI-ELPDGLCDIVSIKKLRITNC-HKLSA-LPEGIGKLV-NLQMLTLASCT--DL-S 683 (784)
Q Consensus 612 ~~~~~~~~l~~L~~L~L~~~~-~~~-~lp~~i~~l~~L~~L~L~~~-~~~~~-lp~~l~~l~-~L~~L~L~~~~--~~-~ 683 (784)
. ...+++|++|++++|. +.+ .+|..+.++++|++|++++| .+... +|..+..++ +|++|++++|. +. .
T Consensus 137 ~----l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 137 T----LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp H----HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred H----HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 1 2258899999999984 443 36666788999999999998 54433 677788899 99999999984 33 4
Q ss_pred CCcccccCCCCCCEEeccCCC-CCCccchhhhCCCCCCEEeccCCC-CC-CcChhhhCCCCCCEEeCCCCch-hcHHHHh
Q 003950 684 ALPDTIGNLSNLNFLDISECL-NIQELPERIGELCSLKTLCLKGCS-MF-ELPSSILNLENLEVVKCDEETA-YQWEYFQ 759 (784)
Q Consensus 684 ~~p~~~~~l~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~l~~n~-l~-~lp~~l~~l~~L~~L~l~~~~~-~~~~~~~ 759 (784)
.+|..+..+++|++|++++|. .....+..++.+++|++|++++|. ++ .....+.++++|+.|+++++-. ..+..+.
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~ 292 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK 292 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHH
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHH
Confidence 567778889999999999998 455677788999999999999996 33 1113578899999999988722 2356676
Q ss_pred hcCCCcEEeee
Q 003950 760 LGQAKFRIEVI 770 (784)
Q Consensus 760 ~~lp~L~i~~~ 770 (784)
..+|+|++...
T Consensus 293 ~~l~~L~l~~n 303 (336)
T 2ast_B 293 EALPHLQINCS 303 (336)
T ss_dssp HHSTTSEESCC
T ss_pred hhCcceEEecc
Confidence 66999987543
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=1.2e-14 Score=155.48 Aligned_cols=287 Identities=14% Similarity=0.071 Sum_probs=168.1
Q ss_pred CCCCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC-----CCHHHHHH
Q 003950 134 DPPPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-----PNVKGIVQ 208 (784)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~-----~~~~~~~~ 208 (784)
..+..|+||+.+++.|.+ +.. +++.|+|++|+|||||++++++. ... .++|+++... .+...++.
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINE--LNL----PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHH--HTC----CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHh--cCC----CEEEEEchhhccccCCCHHHHHH
Confidence 455779999999999999 654 69999999999999999999873 321 2568887642 34455554
Q ss_pred HHHHHcC--------------C----CCCCCC----C---hHHHHHHHHHHhcccCCCcEEEEEeCCCCCc-----h--H
Q 003950 209 KVYQHKG--------------Y----AVPEFQ----T---DEDAINDLERLLKPIRPEAILLVLDDVWSGS-----E--S 256 (784)
Q Consensus 209 ~i~~~l~--------------~----~~~~~~----~---~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-----~--~ 256 (784)
.+.+.+. . ..+... . .......+.+.+.....++++|||||++... + .
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 4444321 0 000000 0 0011222223332212149999999996532 1 1
Q ss_pred HHhhhhccCCCceEEEeccccc--------cc----C----CCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHH
Q 003950 257 LLQKFKFQLPYYKILVTSRSVF--------PQ----F----GSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNK 320 (784)
Q Consensus 257 ~~~~~~~~~~gs~iivTtR~~~--------~~----~----~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~ 320 (784)
.+..+....++.++|+|++... .. . ...+.+.+|+.+|+.+++.......+... . +. ..
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~---~~-~~ 234 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-K---DY-EV 234 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-C---CH-HH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-C---cH-HH
Confidence 2333333345788999988641 00 1 13688999999999999987542211111 1 12 89
Q ss_pred HHHHcCCchhHHHHHHhhhCC-CChHHHHHHHHhhcccCcccCChHHHHHHHHHHH---HhccHHHHHHHhhcCCCCCCc
Q 003950 321 ILRACKGCPLALTVVGGSLCG-KHPAIWQKRVKEWTQDVSVFHSNKEILSCLERSL---DALNNEVKECYMDLCSFPEDQ 396 (784)
Q Consensus 321 i~~~~~g~PLai~~~~~~L~~-~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy---~~L~~~~k~cfl~~a~fp~~~ 396 (784)
|++.|+|+|+++..++..+.. .+...|. .+.... ....+...+.-.+ ..|++..+..+..+|+ +.
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~ 303 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAI---NQTLEY-----AKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG 303 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHH---HHHHHH-----HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHH---HHHHHH-----HHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC
Confidence 999999999999998876532 2222232 111000 0011112222111 1688899999999998 22
Q ss_pred ccChHHHHHHHHH-hhc-cChHHHHHHHHHhhchhhhhhhhhhcccCCCCCCCCcchhh-hhHHHHHHH
Q 003950 397 RIPITALVDMWME-LYE-LVDELFAIANLHELSNLNLANCVATRKYASDDSCYNDHFVM-QHDLLRELA 462 (784)
Q Consensus 397 ~i~~~~Li~~W~a-~~~-~~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~-mHdlv~~~a 462 (784)
+...+.....+ .|. ++.. ....+++.|++.++|... + ..|+ .|++++++.
T Consensus 304 --~~~~l~~~~~~~~g~~~~~~-~~~~~L~~L~~~gli~~~------------~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 --KWSDVKRALELEEGIEISDS-EIYNYLTQLTKHSWIIKE------------G-EKYCPSEPLISLAF 356 (357)
T ss_dssp --CHHHHHHHHHHHHCSCCCHH-HHHHHHHHHHHTTSEEES------------S-SCEEESSHHHHHHT
T ss_pred --CHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhCCCEEec------------C-CEEEecCHHHHHhh
Confidence 44444432211 121 3433 778899999999998641 1 2234 588888763
No 93
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=5.4e-15 Score=145.94 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=105.9
Q ss_pred CEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccC
Q 003950 575 KRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITN 654 (784)
Q Consensus 575 ~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 654 (784)
+.+++++|.++.++..-...++.|++++|.+..+.+.. .+..+++|++|+|++|.+.+..|..+.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46677777766664444455667777777665543221 123677777777777776666666777777788888877
Q ss_pred CCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC
Q 003950 655 CHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 655 ~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
|.+.+..|..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|.+.+..|..+..+++|++|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 7766555566777777888888777776666777777777777777777666666777777777777777777765
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=8.6e-15 Score=164.01 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=93.3
Q ss_pred CCCCEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEE
Q 003950 572 SNLKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLR 651 (784)
Q Consensus 572 ~~L~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 651 (784)
++|++|++++|.++.++ ..+++|+.|++++|.+..+.. +. .+|++|+|++|.+.+ +|. .+++|++|+
T Consensus 80 ~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~-----l~---~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE-----LP---ASLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC-----CC---TTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch-----hh---cCCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 45666666666666554 455666666666666554322 11 166677777665544 554 456677777
Q ss_pred ccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCC-------CEEec
Q 003950 652 ITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSL-------KTLCL 724 (784)
Q Consensus 652 L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L-------~~L~l 724 (784)
+++|.+.+ +|. .+++|++|+|++|.+.+ +|. +. ++|+.|+|++|.+. .+|. +.. +| +.|++
T Consensus 147 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 147 ADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRC 214 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEEC
T ss_pred CCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEec
Confidence 77665433 554 45667777777665443 555 44 66777777766433 5555 433 55 77777
Q ss_pred cCCCCCCcChhhhCCCCCCEEeCCCCchh
Q 003950 725 KGCSMFELPSSILNLENLEVVKCDEETAY 753 (784)
Q Consensus 725 ~~n~l~~lp~~l~~l~~L~~L~l~~~~~~ 753 (784)
++|.|+.+|..+.++++|+.|++++|...
T Consensus 215 s~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 215 RENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred CCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 77777777766666777777777766553
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=5e-15 Score=153.02 Aligned_cols=170 Identities=18% Similarity=0.220 Sum_probs=114.3
Q ss_pred cCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCC
Q 003950 568 FGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVS 646 (784)
Q Consensus 568 l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 646 (784)
+..+++|+.|++++|.+..+ ....+++|+.|++++|.+..+.+ ...+++|++|++++|.+.. +| .+..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-LS-SLKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-GG-GGTTCTT
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC-Ch-hhccCCC
Confidence 44566777777777777666 44566777777777777665433 2267777777777776544 33 3777777
Q ss_pred CcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccC
Q 003950 647 IKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKG 726 (784)
Q Consensus 647 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 726 (784)
|++|++++|.+.. ++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..| +..+++|+.|++++
T Consensus 114 L~~L~L~~n~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 114 LKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp CCEEECTTSCCCC-CG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCC-Ch-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence 7777777765433 33 566777777777777665443 456777777777777775544333 67777777777777
Q ss_pred CCCCCcChhhhCCCCCCEEeCCCCch
Q 003950 727 CSMFELPSSILNLENLEVVKCDEETA 752 (784)
Q Consensus 727 n~l~~lp~~l~~l~~L~~L~l~~~~~ 752 (784)
|.++.+|. +..+++|+.|++++|..
T Consensus 188 N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 188 NHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp SCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred CcCCCChh-hccCCCCCEEECcCCcc
Confidence 77777753 67777777777776644
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=7e-15 Score=166.70 Aligned_cols=175 Identities=17% Similarity=0.240 Sum_probs=130.2
Q ss_pred hccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccc
Q 003950 540 FLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSD 618 (784)
Q Consensus 540 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 618 (784)
.+..+++|+.|++++|.+ ..++.+..+++|+.|+|++|.+..+ ....+++|+.|++++|.+..+.. ..
T Consensus 38 ~~~~L~~L~~L~l~~n~i-----~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~------l~ 106 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDI-----KSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS------LK 106 (605)
T ss_dssp CHHHHTTCCCCBCTTCCC-----CCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT------ST
T ss_pred chhcCCCCCEEECcCCCC-----CCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh------hc
Confidence 356788888888888653 2334477888999999999988877 45677888888888887765431 23
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
.+++|+.|+|++|.+.. + ..+..+++|+.|+|++|.+.+ + ..++.+++|+.|+|++|.+.+..| +..+++|+.|
T Consensus 107 ~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 67888888888886654 3 347788888888888876544 3 467888888888888877665544 7888888888
Q ss_pred eccCCCCCCccchhhhCCCCCCEEeccCCCCCCcC
Q 003950 699 DISECLNIQELPERIGELCSLKTLCLKGCSMFELP 733 (784)
Q Consensus 699 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp 733 (784)
+|++|.+.+ +| .+..+++|+.|+|++|.++..|
T Consensus 181 ~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 181 YLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred ECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 888885544 44 5788888888888888877554
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=1e-14 Score=143.96 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=82.4
Q ss_pred CEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccC
Q 003950 575 KRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITN 654 (784)
Q Consensus 575 ~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 654 (784)
+.++++++.++.++..-.++|+.|++.+|.+..+....+ ..+++|++|+|++|.+.+..|..+.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~----~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF----SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSS----TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHh----hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 455666666655543333455555555555544332221 2455666666666655555555566666666666666
Q ss_pred CCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC
Q 003950 655 CHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 655 ~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
|.+....+..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5533322233455666666666665555555555566666666666665544444444555666666666666543
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=2.5e-16 Score=166.96 Aligned_cols=218 Identities=12% Similarity=0.123 Sum_probs=169.6
Q ss_pred CcEEEeecccccCCcCcCccccCCC--CCCCEEEecccCCCCc--cccccccCceeeeeeccccccccCccccccccCCc
Q 003950 547 LKVMIVTNYGFFPAELSNIQVFGAL--SNLKRIRLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPN 622 (784)
Q Consensus 547 L~~L~l~~~~~~~~~~~~l~~l~~l--~~L~~L~L~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 622 (784)
++.++++++.+.+.. +..+ ++++.|++++|.+.+. ....+++|+.|++++|.+... ........+++
T Consensus 49 ~~~l~l~~~~~~~~~------~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~ 119 (336)
T 2ast_B 49 WQTLDLTGKNLHPDV------TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS---TLHGILSQCSK 119 (336)
T ss_dssp SSEEECTTCBCCHHH------HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH---HHHHHHTTBCC
T ss_pred heeeccccccCCHHH------HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH---HHHHHHhhCCC
Confidence 677888876554332 3444 7899999999988766 344679999999999976432 01122347899
Q ss_pred eEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCC--CCchhccCCCCCCEEEeecC-CCCCC-CcccccCCC-CCCE
Q 003950 623 LLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLS--ALPEGIGKLVNLQMLTLASC-TDLSA-LPDTIGNLS-NLNF 697 (784)
Q Consensus 623 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~L~~~-~~~~~-~p~~~~~l~-~L~~ 697 (784)
|++|++++|.+.+..|..++.+++|++|++++|..++ .+|..+..+++|++|++++| .+... ++..+..++ +|++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 9999999998877788889999999999999994444 37777889999999999999 55443 677888999 9999
Q ss_pred EeccCCC--CC-CccchhhhCCCCCCEEeccCCC-CC-CcChhhhCCCCCCEEeCCCCchhc---HHHHhhcCCCcEEee
Q 003950 698 LDISECL--NI-QELPERIGELCSLKTLCLKGCS-MF-ELPSSILNLENLEVVKCDEETAYQ---WEYFQLGQAKFRIEV 769 (784)
Q Consensus 698 L~l~~n~--~~-~~~p~~l~~l~~L~~L~l~~n~-l~-~lp~~l~~l~~L~~L~l~~~~~~~---~~~~~~~lp~L~i~~ 769 (784)
|++++|. .. ..+|..+..+++|++|++++|. ++ ..+..+.++++|+.|+++++.... ...+.. +|+|+...
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~ 278 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQ 278 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEE
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEe
Confidence 9999994 44 5677788899999999999999 66 667789999999999999885222 223555 88997666
Q ss_pred ecccc
Q 003950 770 IQEDI 774 (784)
Q Consensus 770 ~~~~~ 774 (784)
..+++
T Consensus 279 l~~~i 283 (336)
T 2ast_B 279 VFGIV 283 (336)
T ss_dssp CTTSS
T ss_pred ccCcc
Confidence 66553
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=6.8e-15 Score=166.79 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=119.8
Q ss_pred cCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCC
Q 003950 568 FGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVS 646 (784)
Q Consensus 568 l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 646 (784)
+..+.+|+.|++++|.+..+ ....+++|+.|++++|.+..+.+ ...+++|+.|+|++|.+.. +| .+..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD-LS-SLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCC-CT-TSTTCTT
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCC-Ch-hhccCCC
Confidence 45667777778877777766 45567778888887777665543 2367778888888776543 33 5777778
Q ss_pred CcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccC
Q 003950 647 IKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKG 726 (784)
Q Consensus 647 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 726 (784)
|+.|+|++|.+.. +| .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++
T Consensus 111 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 111 LKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184 (605)
T ss_dssp CCEEECTTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEEecCCCCCC-Cc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence 8888888776443 43 477778888888877765543 567777788888888776555444 77778888888888
Q ss_pred CCCCCcChhhhCCCCCCEEeCCCCchh
Q 003950 727 CSMFELPSSILNLENLEVVKCDEETAY 753 (784)
Q Consensus 727 n~l~~lp~~l~~l~~L~~L~l~~~~~~ 753 (784)
|.++.+| .+..|++|+.|++++|...
T Consensus 185 N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 185 NHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp SCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred CCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 8777764 4777788888877776543
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=2.4e-14 Score=157.50 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=45.8
Q ss_pred CCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCC---cChhhhCC------
Q 003950 669 VNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFE---LPSSILNL------ 739 (784)
Q Consensus 669 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~---lp~~l~~l------ 739 (784)
++|++|++++|.+.+ +|.. +++|+.|++++|.+. .+|. .+++|++|++++|.++. +|.++.++
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~ 388 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence 477888887766554 5543 577888888888544 5665 47889999999998775 56777776
Q ss_pred -------CCCCEEeCCCCchhcHHHHhhcCCCcEEe
Q 003950 740 -------ENLEVVKCDEETAYQWEYFQLGQAKFRIE 768 (784)
Q Consensus 740 -------~~L~~L~l~~~~~~~~~~~~~~lp~L~i~ 768 (784)
++|+.|++++|.....+.++..+.+|.+.
T Consensus 389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~ 424 (454)
T 1jl5_A 389 AEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMN 424 (454)
T ss_dssp ------------------------------------
T ss_pred cccccccCcCCEEECCCCcCCccccchhhHhheeCc
Confidence 78888999888777666666666666553
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=2.3e-14 Score=141.37 Aligned_cols=150 Identities=13% Similarity=0.118 Sum_probs=127.9
Q ss_pred ceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEE
Q 003950 596 QNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLT 675 (784)
Q Consensus 596 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~ 675 (784)
+.+++.++.+..+... ..++|+.|++++|.+.+..+..+.++++|++|+|++|.+.+..|..+..+++|++|+
T Consensus 14 ~~v~c~~~~l~~iP~~-------l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-------LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TEEECTTSCCSSCCSS-------CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred CEEEcCCCCcCcCCCc-------cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 4566666666655432 236899999999988877777899999999999999987777788999999999999
Q ss_pred eecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcCh-hhhCCCCCCEEeCCCCch
Q 003950 676 LASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPS-SILNLENLEVVKCDEETA 752 (784)
Q Consensus 676 L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~ 752 (784)
|++|.+....+..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|..
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99988775555567899999999999998888878889999999999999999998875 488899999999998865
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.8e-14 Score=141.05 Aligned_cols=140 Identities=11% Similarity=0.017 Sum_probs=87.2
Q ss_pred ccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCC
Q 003950 591 RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVN 670 (784)
Q Consensus 591 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 670 (784)
.+++|+.|++.+|.+..+... .+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNG----VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccCcEEECCCCccCccChh----hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc
Confidence 344444444444444332221 1125677777777777666555555677777777777777655444445677777
Q ss_pred CCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC-CcChhhhCCCC
Q 003950 671 LQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSILNLEN 741 (784)
Q Consensus 671 L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~lp~~l~~l~~ 741 (784)
|++|++++|.+.+..+..+..+++|+.|++++|... +.+++|+.|+++.|.++ .+|..+++++.
T Consensus 126 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 126 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 777777777665544455677777777777777443 34456777777777766 67776666654
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=2.5e-14 Score=141.19 Aligned_cols=152 Identities=11% Similarity=0.039 Sum_probs=130.0
Q ss_pred CceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCC-cccCCCCCCcEEEccCCCCCCCCchhccCCCCCCE
Q 003950 595 LQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELP-DGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQM 673 (784)
Q Consensus 595 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 673 (784)
-+.++++++.+..+... ..+.+++|+|++|.+.+..| ..+.++++|++|+|++|.+.+..|..+..+++|++
T Consensus 13 ~~~l~~s~n~l~~iP~~-------~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH-------IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TTEEECCSSCCSSCCSC-------CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCEeEeCCCCcccCccC-------CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 35788888887765432 23467899999998877655 45789999999999998866666668999999999
Q ss_pred EEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCc-ChhhhCCCCCCEEeCCCCch
Q 003950 674 LTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL-PSSILNLENLEVVKCDEETA 752 (784)
Q Consensus 674 L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~ 752 (784)
|+|++|.+.+..|..+..+++|+.|+|++|.+.+..|..+..+++|++|++++|.++.+ |..+..+++|+.|++++|..
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 99999998877778899999999999999988888888999999999999999999977 67889999999999998865
Q ss_pred h
Q 003950 753 Y 753 (784)
Q Consensus 753 ~ 753 (784)
.
T Consensus 166 ~ 166 (220)
T 2v70_A 166 N 166 (220)
T ss_dssp E
T ss_pred c
Confidence 3
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=1.5e-14 Score=154.60 Aligned_cols=174 Identities=14% Similarity=0.132 Sum_probs=125.6
Q ss_pred CEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccC
Q 003950 575 KRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITN 654 (784)
Q Consensus 575 ~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 654 (784)
+.++++++.++.++..-...++.|++++|.+..+..... ...+++|++|+|++|.+.+..|..+.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~---~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWT---PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSS---SSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhh---hhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666666644445567777777777665543321 11578888888888877776677788888889999888
Q ss_pred CCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhh----hCCCCCCEEeccCCCCC
Q 003950 655 CHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERI----GELCSLKTLCLKGCSMF 730 (784)
Q Consensus 655 ~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l----~~l~~L~~L~l~~n~l~ 730 (784)
|.+....+..+..+++|++|+|++|.+....|..+..+++|+.|+|++|.+.. +|..+ ..+++|+.|++++|.|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence 87555445567888889999998888777777888888889999988885544 55443 56888899999998888
Q ss_pred CcC-hhhhCCCCC--CEEeCCCCch
Q 003950 731 ELP-SSILNLENL--EVVKCDEETA 752 (784)
Q Consensus 731 ~lp-~~l~~l~~L--~~L~l~~~~~ 752 (784)
.+| ..+..++.+ +.|++++|..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ccCHHHhhhccHhhcceEEecCCCc
Confidence 887 356677763 7788887754
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=2.3e-14 Score=160.52 Aligned_cols=188 Identities=19% Similarity=0.189 Sum_probs=144.1
Q ss_pred ceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCccccccccCceeeee
Q 003950 522 EVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSLTTVRMKHLQNVSLV 601 (784)
Q Consensus 522 ~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~l~ 601 (784)
+++.+.|..+.. ..+|..+ +++|++|++++|.+. .++ ..+++|++|++++|.++.++. -..+|+.|+++
T Consensus 60 ~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~N~l~-----~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNL-SSLPDNL--PPQITVLEITQNALI-----SLP--ELPASLEYLDACDNRLSTLPE-LPASLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCC-SCCCSCC--CTTCSEEECCSSCCS-----CCC--CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECC
T ss_pred CccEEEeCCCCC-CccCHhH--cCCCCEEECcCCCCc-----ccc--cccCCCCEEEccCCCCCCcch-hhcCCCEEECC
Confidence 445555555543 3477766 388999999998543 222 457899999999999988754 33399999999
Q ss_pred eccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCC
Q 003950 602 MCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTD 681 (784)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 681 (784)
+|.+..+.. .+++|+.|+|++|.+.+ +|. .+++|++|+|++|.+.+ +|. ++ ++|++|+|++|.+
T Consensus 129 ~N~l~~lp~--------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 129 NNQLTMLPE--------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp SSCCSCCCC--------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC
T ss_pred CCcCCCCCC--------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC
Confidence 998876433 47899999999998765 666 57899999999987554 887 66 9999999999876
Q ss_pred CCCCcccccCCCCC-------CEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC-CcChhhhCCCC
Q 003950 682 LSALPDTIGNLSNL-------NFLDISECLNIQELPERIGELCSLKTLCLKGCSMF-ELPSSILNLEN 741 (784)
Q Consensus 682 ~~~~p~~~~~l~~L-------~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~lp~~l~~l~~ 741 (784)
. .+|. +.. +| +.|+|++|.+ +.+|..+..+++|+.|++++|.++ .+|..+.+++.
T Consensus 193 ~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 193 E-SLPA-VPV--RNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp S-SCCC-CC----------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred C-chhh-HHH--hhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 5 7777 554 77 9999999855 568998999999999999999998 66777666543
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=3.8e-16 Score=167.18 Aligned_cols=181 Identities=12% Similarity=0.035 Sum_probs=78.3
Q ss_pred CCCCEEEecccCCCCcc-------cccc-ccCceeeeeeccccccccCcccccccc-CCceEEEEEeCCCCCCC----CC
Q 003950 572 SNLKRIRLEHVSLPSLT-------TVRM-KHLQNVSLVMCNVDQVVQNSTFHFSDA-FPNLLEIDIDYCNDLIE----LP 638 (784)
Q Consensus 572 ~~L~~L~L~~n~l~~~~-------~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~~~~~----lp 638 (784)
++|++|++++|.++... ...+ ++|+.|++++|.+.............. .++|++|+|++|.+... ++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 45555555555554331 1112 455555555555443322211111112 23555555555544422 22
Q ss_pred cccCCCC-CCcEEEccCCCCCCCCchhc----cCC-CCCCEEEeecCCCCCC----CcccccC-CCCCCEEeccCCCCCC
Q 003950 639 DGLCDIV-SIKKLRITNCHKLSALPEGI----GKL-VNLQMLTLASCTDLSA----LPDTIGN-LSNLNFLDISECLNIQ 707 (784)
Q Consensus 639 ~~i~~l~-~L~~L~L~~~~~~~~lp~~l----~~l-~~L~~L~L~~~~~~~~----~p~~~~~-l~~L~~L~l~~n~~~~ 707 (784)
..+..++ +|++|+|++|.+....+..+ ..+ ++|++|+|++|.+... ++..+.. .++|++|+|++|.+..
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 2223333 55555555554433333222 223 3555555555543321 2333333 2355555555554433
Q ss_pred ccc----hhhhCCCCCCEEeccCCCCCC--------cChhhhCCCCCCEEeCCCCch
Q 003950 708 ELP----ERIGELCSLKTLCLKGCSMFE--------LPSSILNLENLEVVKCDEETA 752 (784)
Q Consensus 708 ~~p----~~l~~l~~L~~L~l~~n~l~~--------lp~~l~~l~~L~~L~l~~~~~ 752 (784)
..+ ..+..+++|+.|++++|.+.. ++..+.++++|+.|++++|..
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 222 122344555555555555322 222334455555555555543
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=4.5e-14 Score=140.32 Aligned_cols=130 Identities=17% Similarity=0.103 Sum_probs=86.2
Q ss_pred CceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEec
Q 003950 621 PNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDI 700 (784)
Q Consensus 621 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 700 (784)
++|++|+|++|.+.+..|..+.++++|++|+|++|.+....+..+..+++|++|+|++|.+.+..+..+..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 56666666666666666666777777777777776643333344567777777777776655544455667777777777
Q ss_pred cCCCCCCccchhhhCCCCCCEEeccCCCCCCcCh-hhhCCCCCCEEeCCCCc
Q 003950 701 SECLNIQELPERIGELCSLKTLCLKGCSMFELPS-SILNLENLEVVKCDEET 751 (784)
Q Consensus 701 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~ 751 (784)
++|.+. .+|..+..+++|++|++++|.++.+|. .+..+++|+.|++.+|.
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 776443 666677777777777777777776663 45667777777777664
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=4.5e-14 Score=140.31 Aligned_cols=152 Identities=15% Similarity=0.056 Sum_probs=116.0
Q ss_pred CCEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEcc
Q 003950 574 LKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRIT 653 (784)
Q Consensus 574 L~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 653 (784)
.+.++.+++.+..++..-.++|+.|++++|.+..+.+... ..+++|++|+|++|.+....+..+.++++|++|+|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVF----DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHh----hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3455666666666544445677777777777665544322 367889999999988755555667899999999999
Q ss_pred CCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC
Q 003950 654 NCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 654 ~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
+|.+.+..+..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+....+..+..+++|+.|++++|++.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 98766555556788999999999987655 78888999999999999999766555566888999999999999877
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=7.3e-14 Score=136.70 Aligned_cols=152 Identities=14% Similarity=0.037 Sum_probs=99.7
Q ss_pred CEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccC
Q 003950 575 KRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITN 654 (784)
Q Consensus 575 ~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 654 (784)
+.++.+++.++.++....++|+.|++++|.+..+.... +..+++|++|++++|.+.+..+..+.++++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGV----FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhh----hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 34555555555554444556667777666665443322 23567788888887766655555567778888888887
Q ss_pred CCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC
Q 003950 655 CHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 655 ~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 7655444445677788888888777666555555677778888888877655544444677778888888877654
No 110
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.54 E-value=2.2e-14 Score=165.98 Aligned_cols=209 Identities=16% Similarity=0.172 Sum_probs=154.9
Q ss_pred hccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc--cccccccCceeeeeeccccccccCcccccc
Q 003950 540 FLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQVVQNSTFHFS 617 (784)
Q Consensus 540 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 617 (784)
....+++|++|+++.|......... ..+..+.+|+++++..+.+... ....+.+|+.+++..++.....+. ..+
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~-~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~---~~~ 441 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCS-QSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF---SVF 441 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECC-HHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSS---CTT
T ss_pred ccccccccccchhhccccccccccc-cchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccc---ccc
Confidence 3445777777777765432111100 1134566777777777665443 334567777777776655444332 223
Q ss_pred ccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCC-CCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCC
Q 003950 618 DAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLS-ALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLN 696 (784)
Q Consensus 618 ~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 696 (784)
..+++++.++++.|.+.+..|..+..+++|++|++++|.... ..|..+..+++|++|+|++|.+.+..|..+.++++|+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 478889999999998888888888899999999999886544 4677888999999999999988888888899999999
Q ss_pred EEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCc-ChhhhCC-CCCCEEeCCCCch
Q 003950 697 FLDISECLNIQELPERIGELCSLKTLCLKGCSMFEL-PSSILNL-ENLEVVKCDEETA 752 (784)
Q Consensus 697 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~l-p~~l~~l-~~L~~L~l~~~~~ 752 (784)
.|+|++|.+.+..|..++.+++|++|++++|.++.+ |..+..+ ++|+.|++++|..
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 999999987777777889999999999999999866 4567777 6899999987754
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=8.2e-14 Score=148.18 Aligned_cols=216 Identities=15% Similarity=0.177 Sum_probs=152.1
Q ss_pred CceEEEEEecCCCCcccC-hhccCCCCCcEEEeecccc---cCCcCcCccccCCCCCCCE-EEecccCCCCc---ccccc
Q 003950 521 PEVKVVVLNVRTKKYTLP-KFLEKMDKLKVMIVTNYGF---FPAELSNIQVFGALSNLKR-IRLEHVSLPSL---TTVRM 592 (784)
Q Consensus 521 ~~l~~l~L~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~---~~~~~~~l~~l~~l~~L~~-L~L~~n~l~~~---~~~~l 592 (784)
++++.+.|..+.. ..+| ..|.++++|++|++++|.+ +|... |.+++++.. +.+.+|.+..+ .+..+
T Consensus 30 ~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-----f~~L~~l~~~l~~~~N~l~~l~~~~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-----FSNLPKLHEIRIEKANNLLYINPEAFQNL 103 (350)
T ss_dssp TTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTS-----BCSCTTCCEEEEEEETTCCEECTTSBCCC
T ss_pred CCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhH-----hhcchhhhhhhcccCCcccccCchhhhhc
Confidence 4567777776654 3555 4688899999999988743 44433 677777765 55666777766 34567
Q ss_pred ccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCC-cccCCCC-CCcEEEccCCCCCCCCchhccCCCC
Q 003950 593 KHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELP-DGLCDIV-SIKKLRITNCHKLSALPEGIGKLVN 670 (784)
Q Consensus 593 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~ 670 (784)
++|+.|++.+|.+....+.... ...++..|++.++.....+| ..+..+. .+++|++++|. +..+|.......+
T Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~----~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPDVHKI----HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQ 178 (350)
T ss_dssp TTCCEEEEEEECCSSCCCCTTC----CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEE
T ss_pred cccccccccccccccCCchhhc----ccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccc
Confidence 8888888888887766543322 45567888887765555554 3455553 68888998876 5567776667788
Q ss_pred CCEEEeecCCCCCCCcc-cccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCC-CCCcChhhhCCCCCCEEeCC
Q 003950 671 LQMLTLASCTDLSALPD-TIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCS-MFELPSSILNLENLEVVKCD 748 (784)
Q Consensus 671 L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~ 748 (784)
|++|++.+|+.++.+|. .+..+++|+.|++++|. +..+|. +.+.+|+.|.+.++. ++.+| .+.++++|+.+++.
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 89999887777777775 56888899999999885 455664 345677777766665 77887 47888889988887
Q ss_pred CCc
Q 003950 749 EET 751 (784)
Q Consensus 749 ~~~ 751 (784)
.+.
T Consensus 255 ~~~ 257 (350)
T 4ay9_X 255 YPS 257 (350)
T ss_dssp CHH
T ss_pred CCc
Confidence 543
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=4.8e-14 Score=150.61 Aligned_cols=174 Identities=13% Similarity=0.066 Sum_probs=141.0
Q ss_pred ceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccC-CCCCCcEEEccCCCCCCCCchhccCCCCCCEE
Q 003950 596 QNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLC-DIVSIKKLRITNCHKLSALPEGIGKLVNLQML 674 (784)
Q Consensus 596 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L 674 (784)
+.+++.++.+..+... ..+.++.|+|++|.+.+..+..+. ++++|++|+|++|.+....|..+..+++|++|
T Consensus 21 ~~l~c~~~~l~~iP~~-------~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-------LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSCCSSCCSS-------CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcCccCcc-------CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 5677777777665432 235689999999988777777777 99999999999988666666789999999999
Q ss_pred EeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhh----hCCCCCCEEeCCCC
Q 003950 675 TLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSI----LNLENLEVVKCDEE 750 (784)
Q Consensus 675 ~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l----~~l~~L~~L~l~~~ 750 (784)
+|++|.+....+..+..+++|+.|+|++|.+....|..+..+++|+.|+|++|.++.+|..+ ..+++|+.|++++|
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 99998877666677999999999999999887777888999999999999999999999765 57999999999999
Q ss_pred chhcH--HHHhhcCCCc---EEeeeccccCcc
Q 003950 751 TAYQW--EYFQLGQAKF---RIEVIQEDINLY 777 (784)
Q Consensus 751 ~~~~~--~~~~~~lp~L---~i~~~~~~~~~~ 777 (784)
..... ..+.. +|.+ .+...+|++.|+
T Consensus 174 ~l~~l~~~~~~~-l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 174 KLKKLPLTDLQK-LPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCCCCHHHHHH-SCHHHHTTEECCSSCEECC
T ss_pred CCCccCHHHhhh-ccHhhcceEEecCCCccCC
Confidence 87654 34444 7763 366677777654
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=2.1e-13 Score=145.03 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=72.9
Q ss_pred cCCCCCCCEEEecccCCCCc----cccccccCce-eeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccC
Q 003950 568 FGALSNLKRIRLEHVSLPSL----TTVRMKHLQN-VSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLC 642 (784)
Q Consensus 568 l~~l~~L~~L~L~~n~l~~~----~~~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 642 (784)
|.++++|++|+|++|.+... .+..++++.. +.+..|++..+.+..+ ..+++|++|++++|.+....+..+.
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f----~~l~~L~~L~l~~n~l~~~~~~~~~ 125 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF----QNLPNLQYLLISNTGIKHLPDVHKI 125 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB----CCCTTCCEEEEEEECCSSCCCCTTC
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh----hhccccccccccccccccCCchhhc
Confidence 44555555555555554332 1223333333 2223334433322221 2455555555555544443333344
Q ss_pred CCCCCcEEEccCCCCCCCCch-hccCC-CCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccch-hhhCCCCC
Q 003950 643 DIVSIKKLRITNCHKLSALPE-GIGKL-VNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPE-RIGELCSL 719 (784)
Q Consensus 643 ~l~~L~~L~L~~~~~~~~lp~-~l~~l-~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L 719 (784)
...++..|++.++..+..+|. .+..+ ..|++|++++|.+ ..+|......++|+.|++++|+.++.+|. .+..+++|
T Consensus 126 ~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred ccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cCCChhhccccchhHHhhccCCcccCCCHHHhccCccc
Confidence 444555555544433444332 22333 2355555555433 23444333444555555554444444443 23555555
Q ss_pred CEEeccCCCCCCcCh
Q 003950 720 KTLCLKGCSMFELPS 734 (784)
Q Consensus 720 ~~L~l~~n~l~~lp~ 734 (784)
+.|++++|.|+.+|.
T Consensus 205 ~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 205 VILDISRTRIHSLPS 219 (350)
T ss_dssp SEEECTTSCCCCCCS
T ss_pred chhhcCCCCcCccCh
Confidence 555555555555553
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=5.9e-16 Score=165.70 Aligned_cols=219 Identities=14% Similarity=0.096 Sum_probs=138.3
Q ss_pred CCcccChhccCCCCCcEEEeecccccCCcCcC-ccccCCCC-CCCEEEecccCCCCcc---cccc-----ccCceeeeee
Q 003950 533 KKYTLPKFLEKMDKLKVMIVTNYGFFPAELSN-IQVFGALS-NLKRIRLEHVSLPSLT---TVRM-----KHLQNVSLVM 602 (784)
Q Consensus 533 ~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~l~-~L~~L~L~~n~l~~~~---~~~l-----~~L~~L~l~~ 602 (784)
....+|..+...++|++|++++|.+....... ...+..++ +|++|++++|.++... ...+ ++|+.|++++
T Consensus 10 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 10 GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 33455666666667888888887543222100 02245666 7888888888877652 2222 7788888888
Q ss_pred ccccccccCccccccccC-CceEEEEEeCCCCCCCCCccc----CC-CCCCcEEEccCCCCCC----CCchhccCCC-CC
Q 003950 603 CNVDQVVQNSTFHFSDAF-PNLLEIDIDYCNDLIELPDGL----CD-IVSIKKLRITNCHKLS----ALPEGIGKLV-NL 671 (784)
Q Consensus 603 ~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~lp~~i----~~-l~~L~~L~L~~~~~~~----~lp~~l~~l~-~L 671 (784)
|.+..............+ ++|++|++++|.+....+..+ .. .++|++|++++|.+.. .++..+..++ +|
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 877654433332222234 688888888887655544333 33 3588888888876553 3344455555 88
Q ss_pred CEEEeecCCCCCCCccc----ccCC-CCCCEEeccCCCCCCc----cchhhhC-CCCCCEEeccCCCCCCcCh-----hh
Q 003950 672 QMLTLASCTDLSALPDT----IGNL-SNLNFLDISECLNIQE----LPERIGE-LCSLKTLCLKGCSMFELPS-----SI 736 (784)
Q Consensus 672 ~~L~L~~~~~~~~~p~~----~~~l-~~L~~L~l~~n~~~~~----~p~~l~~-l~~L~~L~l~~n~l~~lp~-----~l 736 (784)
++|+|++|.+....+.. +..+ ++|++|+|++|.+... ++..+.. .++|++|++++|.++..+. .+
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 88888887766555543 3344 4888888888865442 5555555 3588888888888875432 34
Q ss_pred hCCCCCCEEeCCCCc
Q 003950 737 LNLENLEVVKCDEET 751 (784)
Q Consensus 737 ~~l~~L~~L~l~~~~ 751 (784)
..+++|+.|++++|.
T Consensus 250 ~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 250 DSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTTTTCSEEEEEHHH
T ss_pred hcCCCccEEEeccCC
Confidence 667888888887765
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=3.2e-14 Score=131.09 Aligned_cols=128 Identities=20% Similarity=0.140 Sum_probs=110.5
Q ss_pred cCCceEEEEEeCCCCC-CCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCE
Q 003950 619 AFPNLLEIDIDYCNDL-IELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNF 697 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 697 (784)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+.+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4578999999999887 68888889999999999999875544 67899999999999999888778888888999999
Q ss_pred EeccCCCCCCc-cchhhhCCCCCCEEeccCCCCCCcCh----hhhCCCCCCEEeCC
Q 003950 698 LDISECLNIQE-LPERIGELCSLKTLCLKGCSMFELPS----SILNLENLEVVKCD 748 (784)
Q Consensus 698 L~l~~n~~~~~-~p~~l~~l~~L~~L~l~~n~l~~lp~----~l~~l~~L~~L~l~ 748 (784)
|++++|.+.+. .|..++.+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999976552 34788999999999999999998875 68899999999875
No 116
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.51 E-value=1.5e-15 Score=168.71 Aligned_cols=86 Identities=26% Similarity=0.215 Sum_probs=39.2
Q ss_pred CCCcEEEccCCCCCCC----CchhccCCCCCCEEEeecCCCCCCC-----cccccCCCCCCEEeccCCCCCCc----cch
Q 003950 645 VSIKKLRITNCHKLSA----LPEGIGKLVNLQMLTLASCTDLSAL-----PDTIGNLSNLNFLDISECLNIQE----LPE 711 (784)
Q Consensus 645 ~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~~-----p~~~~~l~~L~~L~l~~n~~~~~----~p~ 711 (784)
++|++|++++|.+... +|..+..+++|++|++++|.+.... +..+..+++|++|++++|.+... ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 3455555555443332 3444444555555555554332211 11112345555555555533322 344
Q ss_pred hhhCCCCCCEEeccCCCCC
Q 003950 712 RIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 712 ~l~~l~~L~~L~l~~n~l~ 730 (784)
.+..+++|++|++++|.++
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHCTTCCEEECTTCCCH
T ss_pred HHhhCCCcceEECCCCCCc
Confidence 4445555555555555544
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=7.2e-16 Score=173.79 Aligned_cols=121 Identities=17% Similarity=0.145 Sum_probs=90.1
Q ss_pred ceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEecc
Q 003950 622 NLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDIS 701 (784)
Q Consensus 622 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 701 (784)
.|+.|+|++|.+.+ +|. ++++++|++|+|++|.+. .+|..++.+++|++|+|++|.+.+ +| .++.+++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57788888876554 666 788888888888887644 778788888888888888876654 66 77888888888888
Q ss_pred CCCCCCcc-chhhhCCCCCCEEeccCCCCCCcChhh----hCCCCCCEEeC
Q 003950 702 ECLNIQEL-PERIGELCSLKTLCLKGCSMFELPSSI----LNLENLEVVKC 747 (784)
Q Consensus 702 ~n~~~~~~-p~~l~~l~~L~~L~l~~n~l~~lp~~l----~~l~~L~~L~l 747 (784)
+|.+.+.. |..++.+++|+.|++++|.++.+|+.+ ..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88666655 777888888888888888887665432 34777777753
No 118
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=1.2e-15 Score=169.34 Aligned_cols=255 Identities=17% Similarity=0.168 Sum_probs=180.5
Q ss_pred ccceeEEeecCCCccCCccc--CCCCceEEEEEecCCCCc----ccChhccCCCCCcEEEeecccccCCcCcCccccCCC
Q 003950 498 LNASLLSISTDETFSSNWYD--MEAPEVKVVVLNVRTKKY----TLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGAL 571 (784)
Q Consensus 498 ~~~r~lsi~~~~~~~~~~~~--~~~~~l~~l~L~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l 571 (784)
+..+.+.+.........+.. ..+++++.+.|..+.... .+|..+..+++|++|++++|.+....+..+ +..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l--~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV--LQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH--HHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH--HHHH
Confidence 34556666544322222221 246788899998886542 567888999999999999975422111111 1223
Q ss_pred C----CCCEEEecccCCCCc-------cccccccCceeeeeeccccccccCccc-cccccCCceEEEEEeCCCCCCC---
Q 003950 572 S----NLKRIRLEHVSLPSL-------TTVRMKHLQNVSLVMCNVDQVVQNSTF-HFSDAFPNLLEIDIDYCNDLIE--- 636 (784)
Q Consensus 572 ~----~L~~L~L~~n~l~~~-------~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~--- 636 (784)
. +|++|++++|.++.. ....+++|+.|++++|.+......... .+....++|++|++++|.+...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 3 799999999998842 345778999999999987543222111 1122456899999999987763
Q ss_pred -CCcccCCCCCCcEEEccCCCCCCCCchhcc-----CCCCCCEEEeecCCCCCC----CcccccCCCCCCEEeccCCCCC
Q 003950 637 -LPDGLCDIVSIKKLRITNCHKLSALPEGIG-----KLVNLQMLTLASCTDLSA----LPDTIGNLSNLNFLDISECLNI 706 (784)
Q Consensus 637 -lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~-----~l~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~l~~n~~~ 706 (784)
++..+..+++|++|++++|.+....+..+. .+++|++|++++|.+... ++..+..+++|++|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 356677789999999999885544344443 367999999999887664 5777888999999999999654
Q ss_pred Ccc-----chhhhCCCCCCEEeccCCCCCC-----cChhhhCCCCCCEEeCCCCchhc
Q 003950 707 QEL-----PERIGELCSLKTLCLKGCSMFE-----LPSSILNLENLEVVKCDEETAYQ 754 (784)
Q Consensus 707 ~~~-----p~~l~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~~~~~~ 754 (784)
... +..+..+++|++|++++|.++. +|..+.++++|+.|++++|....
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 432 2222368999999999999985 78888899999999999987643
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=6.4e-14 Score=131.99 Aligned_cols=130 Identities=22% Similarity=0.260 Sum_probs=79.6
Q ss_pred CCceEEEEEeCCCCC-CCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 620 FPNLLEIDIDYCNDL-IELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 620 l~~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
.++|+.|++++|.+. +.+|..+..+++|++|++++|.+.. + ..++.+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 355666666666554 4566656666666666666665333 3 456666666666666666555566666666666666
Q ss_pred eccCCCCCCccc--hhhhCCCCCCEEeccCCCCCCcCh----hhhCCCCCCEEeCCCCch
Q 003950 699 DISECLNIQELP--ERIGELCSLKTLCLKGCSMFELPS----SILNLENLEVVKCDEETA 752 (784)
Q Consensus 699 ~l~~n~~~~~~p--~~l~~l~~L~~L~l~~n~l~~lp~----~l~~l~~L~~L~l~~~~~ 752 (784)
++++|.+.+ +| ..++.+++|++|++++|.++.+|. .+..+++|+.|++.++..
T Consensus 101 ~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 666664433 22 456666666666666666666654 556666666666665543
No 120
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.47 E-value=1.6e-13 Score=158.74 Aligned_cols=205 Identities=16% Similarity=0.171 Sum_probs=166.1
Q ss_pred CCCCceEEEEEecCCCC--cccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc----cccc
Q 003950 518 MEAPEVKVVVLNVRTKK--YTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL----TTVR 591 (784)
Q Consensus 518 ~~~~~l~~l~L~~~~~~--~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~----~~~~ 591 (784)
..++.++.+.+..+... ...+..+..+.+|++|++..++..... ..+..+++|+.+++..+..... ....
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS----SNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC----SCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc----ccccccccccchhhhhcccccccccccccc
Confidence 34677777777766443 346778889999999999987542211 2257889999999988765433 4456
Q ss_pred cccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCC-CCCcccCCCCCCcEEEccCCCCCCCCchhccCCCC
Q 003950 592 MKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLI-ELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVN 670 (784)
Q Consensus 592 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 670 (784)
+.+++.++++.|.+....+... ..+++|+.|++++|.... ..|..+..+++|++|+|++|.+.+..|..++++++
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~----~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTT----TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cccccccccccccccccccccc----ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 7888899998887766554433 378899999999997554 46888999999999999999877777889999999
Q ss_pred CCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCC-CCCCEEeccCCCCC
Q 003950 671 LQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGEL-CSLKTLCLKGCSMF 730 (784)
Q Consensus 671 L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l-~~L~~L~l~~n~l~ 730 (784)
|++|+|++|.+.+..|..+..+++|+.|+|++|.+.+..|..+..+ ++|++|++++|++.
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999999998887778889999999999999999988888889888 68999999999986
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=5.4e-14 Score=142.85 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=118.2
Q ss_pred CCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccccCCc
Q 003950 544 MDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPN 622 (784)
Q Consensus 544 l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 622 (784)
+.++..++++++. +..+..+..+++|++|++++|.++.+ ....+++|+.|++++|.+..+.+ ...+++
T Consensus 18 l~~l~~l~l~~~~-----i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~------l~~l~~ 86 (263)
T 1xeu_A 18 LANAVKQNLGKQS-----VTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP------LKDLTK 86 (263)
T ss_dssp HHHHHHHHHTCSC-----TTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG------GTTCSS
T ss_pred HHHHHHHHhcCCC-----cccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh------hccCCC
Confidence 4445555555432 22233456778888888888888776 45567888888888887766544 236788
Q ss_pred eEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccC
Q 003950 623 LLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISE 702 (784)
Q Consensus 623 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 702 (784)
|++|++++|.+.+ +|. +.. ++|++|++++|.+. .+| .++.+++|++|++++|.+.+ +| .+..+++|+.|++++
T Consensus 87 L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 87 LEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHG 159 (263)
T ss_dssp CCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTT
T ss_pred CCEEECCCCccCC-cCc-ccc-CcccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCC
Confidence 8888888886554 444 233 78888888887644 444 57788888888888876543 44 577788888888888
Q ss_pred CCCCCccchhhhCCCCCCEEeccCCCCCCcC
Q 003950 703 CLNIQELPERIGELCSLKTLCLKGCSMFELP 733 (784)
Q Consensus 703 n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp 733 (784)
|.+.+. ..+..+++|+.|++++|.++..|
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 865554 56778888888888888877555
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=4.1e-13 Score=126.39 Aligned_cols=114 Identities=22% Similarity=0.163 Sum_probs=95.0
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCc--ccccCCCCCC
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALP--DTIGNLSNLN 696 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p--~~~~~l~~L~ 696 (784)
.+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+ +| ..+..+++|+
T Consensus 47 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCC
T ss_pred hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCC
Confidence 678889999998876554 668899999999999998777688888889999999999987654 43 7889999999
Q ss_pred EEeccCCCCCCccc---hhhhCCCCCCEEeccCCCCCCcChh
Q 003950 697 FLDISECLNIQELP---ERIGELCSLKTLCLKGCSMFELPSS 735 (784)
Q Consensus 697 ~L~l~~n~~~~~~p---~~l~~l~~L~~L~l~~n~l~~lp~~ 735 (784)
+|++++|.+.+..+ ..+..+++|++|++++|.+.++|..
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99999997655443 3788999999999999999888864
No 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=1.8e-11 Score=132.22 Aligned_cols=283 Identities=16% Similarity=0.122 Sum_probs=178.1
Q ss_pred CCCCCCCCchhHHHHHHHHh----CCcE--EEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELFK----DGRQ--VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 209 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~----~~~~--vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 209 (784)
|..++||+.+++++.+++.. .... .+.|+|++|+||||||+.+++ .........+++++++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 36799999999999999873 3334 899999999999999999987 333322334668887777888899999
Q ss_pred HHHHcCCCCCCCC-ChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchHHHhhhhcc-----C---CCceEEEeccccc--
Q 003950 210 VYQHKGYAVPEFQ-TDEDAINDLERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQ-----L---PYYKILVTSRSVF-- 278 (784)
Q Consensus 210 i~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~-----~---~gs~iivTtR~~~-- 278 (784)
++..++...+... ......+.+...+.. .+++.+||||+++.........+... . .+..||+||+...
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRE-RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHH-TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhh-cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 9998875433221 233444445544422 46789999999977654433333211 1 4667888876541
Q ss_pred -c-------c-CCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHc---------CCchhHHHHHHhh-h
Q 003950 279 -P-------Q-FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRAC---------KGCPLALTVVGGS-L 339 (784)
Q Consensus 279 -~-------~-~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~---------~g~PLai~~~~~~-L 339 (784)
. . ....+.+++++.++..+++...+..... ...-.++..+.|++.+ +|.|..+..+... .
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 0 0 1126999999999999999877532111 0122467888999999 7887554433222 1
Q ss_pred C-----CC---ChHHHHHHHHhhcccCcccCChHHHHHHHHHHHHhccHHHHHHHhhcCCCC---CCcccChHHHHHHHH
Q 003950 340 C-----GK---HPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDALNNEVKECYMDLCSFP---EDQRIPITALVDMWM 408 (784)
Q Consensus 340 ~-----~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp---~~~~i~~~~Li~~W~ 408 (784)
. +. +.+.....+..... ..+.-.+..|+.+.+.++..++.+. .+..+....+...+.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLF------------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSC------------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhh------------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 1 11 12222222322211 1123346778888888877777543 222455566665554
Q ss_pred Hh----h--ccChHHHHHHHHHhhchhhhhhhh
Q 003950 409 EL----Y--ELVDELFAIANLHELSNLNLANCV 435 (784)
Q Consensus 409 a~----~--~~~~~~~~~~~l~~L~~~sli~~~ 435 (784)
.. + .+.. ....+++++|...++|...
T Consensus 320 ~~~~~~~~~~~~~-~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 320 IVCEEYGERPRVH-SQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHTTCCCCCH-HHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHcCCCCCCH-HHHHHHHHHHHhCCCeEEe
Confidence 31 1 1122 3778999999999999764
No 124
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=4.8e-12 Score=136.55 Aligned_cols=278 Identities=13% Similarity=0.114 Sum_probs=172.0
Q ss_pred CCCCCCCchhHHHHHHHH----hCCcEEEEEEcCCCCcHHHHHHHHhccccccc------cc-CCceEEEEeCCCC-CHH
Q 003950 137 PVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG------KF-KDNIFFVTVSQTP-NVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~------~f-~~~~~wv~~~~~~-~~~ 204 (784)
..++||+.+++++.+++. ....+.+.|+|++|+||||||+.+++ .... .+ ...++|++++... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 678999999999998876 33467899999999999999999998 3322 23 4456788877766 888
Q ss_pred HHHHHHHHHcCCC-CCCC-CChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc----hHH-HhhhhccCCCceEEEecccc
Q 003950 205 GIVQKVYQHKGYA-VPEF-QTDEDAINDLERLLKPIRPEAILLVLDDVWSGS----ESL-LQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 205 ~~~~~i~~~l~~~-~~~~-~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----~~~-~~~~~~~~~gs~iivTtR~~ 277 (784)
.++..++.++... .+.. .........+...+ ..++.+|||||++... ... +..+....++..+|+||+..
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT---RNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH---SSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh---ccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 8889988887322 1111 11233344444433 4555599999996532 122 33333333778899998864
Q ss_pred c----------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcC---Cchh-HHHHHHhhh--C-
Q 003950 278 F----------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACK---GCPL-ALTVVGGSL--C- 340 (784)
Q Consensus 278 ~----------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~~L--~- 340 (784)
. ...+..+.+++++.++..+++...+...-. ...-.++..+.|++.++ |.|. |+..+-... +
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI-KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSC-TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcc-cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1 112348999999999999999987532100 01123566778888887 9886 444333222 2
Q ss_pred C---CChHHHHHHHHhhcccCcccCChHHHHHHHHHHHHhccHHHHHHHhhcCCCCCCcccChHHHHHHHHHhh--ccCh
Q 003950 341 G---KHPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDALNNEVKECYMDLCSFPEDQRIPITALVDMWMELY--ELVD 415 (784)
Q Consensus 341 ~---~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~~--~~~~ 415 (784)
+ -+.+.+...+.+.. ...+.-++..|+.+.+..+..++....+-.+. ......--..| .+..
T Consensus 254 ~~~~i~~~~v~~~~~~~~------------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g~~~~~~ 320 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE------------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFKQKPLSY 320 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH------------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTTCCCCCH
T ss_pred CCCccCHHHHHHHHHHHh------------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcCCCCCCH
Confidence 1 13556665554431 13456677889988888777676511101110 11111111112 1222
Q ss_pred HHHHHHHHHhhchhhhhhh
Q 003950 416 ELFAIANLHELSNLNLANC 434 (784)
Q Consensus 416 ~~~~~~~l~~L~~~sli~~ 434 (784)
....+++..|...+++..
T Consensus 321 -~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 321 -RRFSDIISELDMFGIVKI 338 (384)
T ss_dssp -HHHHHHHHHHHHTTSEEE
T ss_pred -HHHHHHHHHHHhCCCEEE
Confidence 377889999999999975
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=6.7e-13 Score=134.74 Aligned_cols=150 Identities=15% Similarity=0.202 Sum_probs=107.1
Q ss_pred hccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc-cccccccCceeeeeeccccccccCccccccc
Q 003950 540 FLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL-TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSD 618 (784)
Q Consensus 540 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 618 (784)
.+..+++|++|++++|++ ..++.+..+++|++|++++|.++.+ ....+++|+.|++++|.+..+....
T Consensus 36 ~~~~l~~L~~L~l~~n~i-----~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~------ 104 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNI-----QSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP------ 104 (263)
T ss_dssp CHHHHTTCSEEECTTSCC-----CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCC------
T ss_pred chhhcCcCcEEECcCCCc-----ccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCccc------
Confidence 567788888888887643 2233467778888888888888776 3556778888888888776643211
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
. ++|+.|++++|.+.+ +| .+..+++|++|++++|.+ ..+| .++.+++|++|++++|.+.+. ..+..+++|+.|
T Consensus 105 ~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L 177 (263)
T 1xeu_A 105 S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWI 177 (263)
T ss_dssp C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEE
T ss_pred c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEE
Confidence 2 778888888886654 33 477888888888888764 4455 577888888888888766544 567778888888
Q ss_pred eccCCCCCC
Q 003950 699 DISECLNIQ 707 (784)
Q Consensus 699 ~l~~n~~~~ 707 (784)
++++|.+..
T Consensus 178 ~l~~N~~~~ 186 (263)
T 1xeu_A 178 DLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEC
T ss_pred eCCCCcccC
Confidence 888876544
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=1.2e-11 Score=133.55 Aligned_cols=284 Identities=14% Similarity=0.123 Sum_probs=175.3
Q ss_pred CCCCCCCCchhHHHHHHHH----hCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-----cCCceEEEEeCCCCCHHHH
Q 003950 136 PPVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK-----FKDNIFFVTVSQTPNVKGI 206 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~~wv~~~~~~~~~~~ 206 (784)
|..++||+.+++++..++. ....+.+.|+|++|+||||+|+.+++ ..... ....++|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 4778999999999999885 24567899999999999999999997 33222 1334668888888888999
Q ss_pred HHHHHHHcCCCCCCCCC-hHHHHHHHHHHhcccCCCcEEEEEeCCCCCch-----HHHhh-hhcc-----CCCceEEEec
Q 003950 207 VQKVYQHKGYAVPEFQT-DEDAINDLERLLKPIRPEAILLVLDDVWSGSE-----SLLQK-FKFQ-----LPYYKILVTS 274 (784)
Q Consensus 207 ~~~i~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~-----~~~~~-~~~~-----~~gs~iivTt 274 (784)
+..++.+++...+.... ..+....+...+.. .+++.+|||||++.... ..+.. +... ..+..+|+||
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSR-LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTT-SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 99999998764433222 23334444444422 46789999999965321 22222 2222 3456777777
Q ss_pred cccc----------ccCC-CceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcC---Cchh-HHHHHHhhh
Q 003950 275 RSVF----------PQFG-SGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACK---GCPL-ALTVVGGSL 339 (784)
Q Consensus 275 R~~~----------~~~~-~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~~L 339 (784)
+... .... ..+.+++++.++..+++...+..... ...-.++..+.+++.++ |.|- ++.++....
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN-PGVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC-TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 6541 1122 26899999999999999887532100 01112456777888887 9994 333332222
Q ss_pred C-----CC---ChHHHHHHHHhhcccCcccCChHHHHHHHHHHHHhccHHHHHHHhhcC-CCCCCcccChHHHHHHHHHh
Q 003950 340 C-----GK---HPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDALNNEVKECYMDLC-SFPEDQRIPITALVDMWMEL 410 (784)
Q Consensus 340 ~-----~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a-~fp~~~~i~~~~Li~~W~a~ 410 (784)
. +. +.+.+...+.+.. ...+.-++..|+.+.+..+..++ ++-....+....+.+.....
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE------------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH------------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh------------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 1 11 2445554444321 22355567889988887776666 34322345555444443221
Q ss_pred ---hccCh--HHHHHHHHHhhchhhhhhhh
Q 003950 411 ---YELVD--ELFAIANLHELSNLNLANCV 435 (784)
Q Consensus 411 ---~~~~~--~~~~~~~l~~L~~~sli~~~ 435 (784)
....+ ...+..+++.|...+++...
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 11111 14788899999999999763
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=1.6e-12 Score=125.13 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=59.3
Q ss_pred CEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccC
Q 003950 575 KRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITN 654 (784)
Q Consensus 575 ~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 654 (784)
+++++++|.++.++..-..+|+.|++.+|.+..+.... .+..+++|++|+|++|.+.+..|..+.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56677777666554333335555555555443332211 112344444444444444444444444444444444444
Q ss_pred CCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCC
Q 003950 655 CHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNI 706 (784)
Q Consensus 655 ~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~ 706 (784)
|.+.+..|..+..+++|++|+|++|.+.+..|..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 4433333333444444444444444444444444444444444444444433
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=1.3e-12 Score=123.98 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=107.9
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCC-CCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIV-SIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNF 697 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 697 (784)
.+++|+.|++++|.+. .+|. +..+. +|++|++++|.+.+ + ..++.+++|++|++++|.+.+..|..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 5678899999988665 4555 44444 99999999987544 4 57888999999999998766443344588999999
Q ss_pred EeccCCCCCCccch--hhhCCCCCCEEeccCCCCCCcChh----hhCCCCCCEEeCCCCchhcHHHHhh
Q 003950 698 LDISECLNIQELPE--RIGELCSLKTLCLKGCSMFELPSS----ILNLENLEVVKCDEETAYQWEYFQL 760 (784)
Q Consensus 698 L~l~~n~~~~~~p~--~l~~l~~L~~L~l~~n~l~~lp~~----l~~l~~L~~L~l~~~~~~~~~~~~~ 760 (784)
|++++|.+ +.+|. .++.+++|+.|++++|.++.+|.. +..+++|+.|+++.+..........
T Consensus 93 L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~ 160 (176)
T 1a9n_A 93 LILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEK 160 (176)
T ss_dssp EECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHH
T ss_pred EECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHHHHHH
Confidence 99999865 66776 788999999999999999988875 8899999999999887766544433
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=9.6e-15 Score=164.61 Aligned_cols=194 Identities=15% Similarity=0.085 Sum_probs=133.8
Q ss_pred CCCCCCCEEEecccCCCCc--cccccccCceeeeeecccccc---------ccCccccccccCCceEEEE-EeCCCCCCC
Q 003950 569 GALSNLKRIRLEHVSLPSL--TTVRMKHLQNVSLVMCNVDQV---------VQNSTFHFSDAFPNLLEID-IDYCNDLIE 636 (784)
Q Consensus 569 ~~l~~L~~L~L~~n~l~~~--~~~~l~~L~~L~l~~~~~~~~---------~~~~~~~~~~~l~~L~~L~-L~~~~~~~~ 636 (784)
..+++|+.|+|++|.++.+ .+..+++|+.|++.+|..... ...........+++|+.|+ ++.|.+. .
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-D 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-H
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-h
Confidence 4566777777777766655 334566667766654421000 0001111122455666665 3332110 0
Q ss_pred CCc------ccCC--CCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCc
Q 003950 637 LPD------GLCD--IVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQE 708 (784)
Q Consensus 637 lp~------~i~~--l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~ 708 (784)
++. .+.. ...|++|+|++|.+ ..+|. ++.+++|++|+|++|.+. .+|..++.+++|+.|+|++|.+.+
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCC-CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 000 0111 12599999999875 45786 999999999999998766 889999999999999999997665
Q ss_pred cchhhhCCCCCCEEeccCCCCCCc--ChhhhCCCCCCEEeCCCCchhcH----HHHhhcCCCcEEe
Q 003950 709 LPERIGELCSLKTLCLKGCSMFEL--PSSILNLENLEVVKCDEETAYQW----EYFQLGQAKFRIE 768 (784)
Q Consensus 709 ~p~~l~~l~~L~~L~l~~n~l~~l--p~~l~~l~~L~~L~l~~~~~~~~----~~~~~~lp~L~i~ 768 (784)
+| .++.+++|+.|++++|.++.+ |..+.+|++|+.|++++|..... ..+...+|+|++.
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 78 899999999999999999987 89999999999999999987653 2344447887654
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.36 E-value=2e-11 Score=131.81 Aligned_cols=284 Identities=13% Similarity=0.120 Sum_probs=171.5
Q ss_pred CCCCCCCCCchhHHHHHHHH----hCCcEEEEEEcCCCCcHHHHHHHHhccccccccc--CCceEEEEeCCCCCHHHHHH
Q 003950 135 PPPVTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF--KDNIFFVTVSQTPNVKGIVQ 208 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~~wv~~~~~~~~~~~~~ 208 (784)
.+..++||+.+++.+.+++. ....+.+.|+|++|+||||||+.+++ .....+ ...++|+++....+...++.
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 34679999999999999887 34467899999999999999999998 444443 34466888766667788888
Q ss_pred HHHHHcCCCCCCCC-ChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc----hHHHhhh----hc-cCCCceEEEeccccc
Q 003950 209 KVYQHKGYAVPEFQ-TDEDAINDLERLLKPIRPEAILLVLDDVWSGS----ESLLQKF----KF-QLPYYKILVTSRSVF 278 (784)
Q Consensus 209 ~i~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~----~~~~~~~----~~-~~~gs~iivTtR~~~ 278 (784)
.++.+++...+... ........+...+.. .+++.+||+|+++... ...+..+ .. ...+..+|+||+...
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRD-YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHT-CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 88887765433211 223334445554432 4568999999985421 1112222 11 223556777776541
Q ss_pred ----------ccCC-CceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcC---CchhHHHH-HHhhh----
Q 003950 279 ----------PQFG-SGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACK---GCPLALTV-VGGSL---- 339 (784)
Q Consensus 279 ----------~~~~-~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~---g~PLai~~-~~~~L---- 339 (784)
.... ..+.+++++.++..+++...+..... ...-..+..+.+++.++ |.|..+.. +....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 1111 27899999999999999876531111 11223667788888887 99974443 32221
Q ss_pred -CCC---ChHHHHHHHHhhcccCcccCChHHHHHHHHHHHHhccHHHHHHHhhcCCCCC-C-cccChHHHHHHHHH--hh
Q 003950 340 -CGK---HPAIWQKRVKEWTQDVSVFHSNKEILSCLERSLDALNNEVKECYMDLCSFPE-D-QRIPITALVDMWME--LY 411 (784)
Q Consensus 340 -~~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~-~-~~i~~~~Li~~W~a--~~ 411 (784)
.+. +.+....++.+.. ...+.-.+..||...+..+..++...+ + ..+....+.+.... +.
T Consensus 254 ~~~~~~i~~~~v~~a~~~~~------------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEIE------------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHHH------------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred hcCCCccCHHHHHHHHHHHh------------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 111 2344443333221 234556677888888887776663222 2 12334444333221 10
Q ss_pred -ccCh--HHHHHHHHHhhchhhhhhh
Q 003950 412 -ELVD--ELFAIANLHELSNLNLANC 434 (784)
Q Consensus 412 -~~~~--~~~~~~~l~~L~~~sli~~ 434 (784)
...+ ......+++.|...++|..
T Consensus 322 ~g~~~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 322 LGVEAVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HTCCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 1221 1367889999999999965
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=5.6e-12 Score=121.29 Aligned_cols=124 Identities=18% Similarity=0.233 Sum_probs=75.3
Q ss_pred EEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCC
Q 003950 625 EIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECL 704 (784)
Q Consensus 625 ~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~ 704 (784)
+++++++. ...+|..+. ++|++|++++|. +..+|..+..+++|++|+|++|.+.+..+..+.++++|+.|+|++|.
T Consensus 14 ~l~~~~~~-l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKG-LKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSC-CSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCC-CCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 34444443 334454432 466666666654 34566666666666666666666655555566666667777776665
Q ss_pred CCCccchhhhCCCCCCEEeccCCCCCCcCh-hhhCCCCCCEEeCCCCch
Q 003950 705 NIQELPERIGELCSLKTLCLKGCSMFELPS-SILNLENLEVVKCDEETA 752 (784)
Q Consensus 705 ~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~ 752 (784)
+....|..+..+++|++|++++|.++.+|. .+..+++|+.|++++|..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 555555556666677777777776666654 356666677776666543
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=3.3e-12 Score=122.90 Aligned_cols=128 Identities=14% Similarity=0.068 Sum_probs=107.6
Q ss_pred ceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCc-ccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEE
Q 003950 596 QNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPD-GLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQML 674 (784)
Q Consensus 596 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L 674 (784)
+.++++++.+..+... ...+|++|++++|.+.+..+. .++.+++|++|+|++|.+.+..|..++.+++|++|
T Consensus 11 ~~l~~s~~~l~~ip~~-------~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-------IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSC-------CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCcCccC-------CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 6788888877665432 224899999999977666554 48899999999999998777778889999999999
Q ss_pred EeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCC
Q 003950 675 TLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 675 ~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
+|++|.+.+..|..+..+++|++|+|++|.+.+..|..++.+++|++|++++|.++
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99998887777777899999999999999888888888999999999999999987
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.35 E-value=1e-13 Score=159.09 Aligned_cols=247 Identities=11% Similarity=0.090 Sum_probs=151.7
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc----cccccccC
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL----TTVRMKHL 595 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~L 595 (784)
+++++.+.+... ....+|..+..+++|++|++++|......+. ..+..+++|++|+++ +.+... ....+++|
T Consensus 269 ~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~--~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 269 PRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHC--TLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHH--HHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred cccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHH--HHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 345555544432 2355677777788888888887652111110 124677888888887 333222 22356778
Q ss_pred ceeeeee----------ccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCC-CCCCcEEEccC---CCCCCC-
Q 003950 596 QNVSLVM----------CNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCD-IVSIKKLRITN---CHKLSA- 660 (784)
Q Consensus 596 ~~L~l~~----------~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~-l~~L~~L~L~~---~~~~~~- 660 (784)
+.|++.+ |... .......+...+++|++|+++.|.+.+..+..++. +++|+.|++++ |..++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~--~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLV--SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCC--CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CEEEeecCccccccccccCcc--CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 8888884 3211 11111122335788888888776666555555554 77888888863 223333
Q ss_pred -----CchhccCCCCCCEEEeecCC--CCCCCcccc-cCCCCCCEEeccCCCCCC-ccchhhhCCCCCCEEeccCCCCC-
Q 003950 661 -----LPEGIGKLVNLQMLTLASCT--DLSALPDTI-GNLSNLNFLDISECLNIQ-ELPERIGELCSLKTLCLKGCSMF- 730 (784)
Q Consensus 661 -----lp~~l~~l~~L~~L~L~~~~--~~~~~p~~~-~~l~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~- 730 (784)
++..+..+++|++|++++|. +....+..+ ..+++|+.|++++|.+.+ .++..+..+++|++|++++|.++
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 33335668888888887654 333333333 347888888888886554 34555577888888888888876
Q ss_pred -CcChhhhCCCCCCEEeCCCCchhc--HHHHhhcCCCcEEeeecc
Q 003950 731 -ELPSSILNLENLEVVKCDEETAYQ--WEYFQLGQAKFRIEVIQE 772 (784)
Q Consensus 731 -~lp~~l~~l~~L~~L~l~~~~~~~--~~~~~~~lp~L~i~~~~~ 772 (784)
.++..+..+++|+.|++++|.... ...+...+|.+.+.....
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 345555678888888888776533 344556688887766553
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=6.6e-12 Score=120.77 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=72.4
Q ss_pred CceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEec
Q 003950 621 PNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDI 700 (784)
Q Consensus 621 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 700 (784)
++|++|++++|.+. .+|..+.++++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..+..+++|+.|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 45666666666443 55666777777777777776655555556777777777777776666555566777777777777
Q ss_pred cCCCCCCccchhhhCCCCCCEEeccCCCCC
Q 003950 701 SECLNIQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 701 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
++|.+....+..+..+++|+.|++++|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777554433345667777777777777654
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=4.1e-12 Score=116.80 Aligned_cols=124 Identities=17% Similarity=0.125 Sum_probs=105.9
Q ss_pred CCCCCcEEEccCCCCC-CCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCE
Q 003950 643 DIVSIKKLRITNCHKL-SALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKT 721 (784)
Q Consensus 643 ~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 721 (784)
..++|+.|++++|.+. +.+|..++.+++|++|++++|.+.+. ..++.+++|+.|++++|.+.+.+|..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999876 68898889999999999999877655 77899999999999999887778888888999999
Q ss_pred EeccCCCCCCcC--hhhhCCCCCCEEeCCCCchhcHHH----HhhcCCCcEEe
Q 003950 722 LCLKGCSMFELP--SSILNLENLEVVKCDEETAYQWEY----FQLGQAKFRIE 768 (784)
Q Consensus 722 L~l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~~----~~~~lp~L~i~ 768 (784)
|++++|.++.+| ..+..+++|+.|++++|.....+. ....+|+|+..
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 999999999875 789999999999999998766532 33348888643
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=2.1e-12 Score=150.27 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=89.9
Q ss_pred CCCCEEEecccCCCCccccccccCceeeeeecccccccc-----CccccccccCCceEEEEEeCCCCCCCCCcccCCCCC
Q 003950 572 SNLKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQ-----NSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVS 646 (784)
Q Consensus 572 ~~L~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 646 (784)
+.++.|.|.+|.+.... ...|+.++++.+.+..+.. ......+..+++|+.|+|++|.+. .+|..+.++++
T Consensus 173 ~~~~~l~L~~n~~~~~~---~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN---QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcch---hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 45677788777776542 2233444444443332210 011122336778888888888655 67777778888
Q ss_pred CcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccC
Q 003950 647 IKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKG 726 (784)
Q Consensus 647 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 726 (784)
|++|+|++|.+. .+|..+++|++|++|+|++|.+. .+|..++.+++|++|+|++|.+ +.+|..|+.|++|++|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCC
Confidence 888888887654 78888888888888888887765 7788888888888888888854 57787888888888888888
Q ss_pred CCCCC-cChhh
Q 003950 727 CSMFE-LPSSI 736 (784)
Q Consensus 727 n~l~~-lp~~l 736 (784)
|.|+. +|..+
T Consensus 326 N~l~~~~p~~~ 336 (727)
T 4b8c_D 326 NPLEKQFLKIL 336 (727)
T ss_dssp SCCCSHHHHHH
T ss_pred CccCCCChHHH
Confidence 88874 44444
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=1.3e-11 Score=117.13 Aligned_cols=110 Identities=15% Similarity=0.062 Sum_probs=57.4
Q ss_pred CceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEec
Q 003950 621 PNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDI 700 (784)
Q Consensus 621 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 700 (784)
++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34555555555444433444555666666666665543333333455666666666665544444444555566666666
Q ss_pred cCCCCCCccchhhhCCCCCCEEeccCCCCC
Q 003950 701 SECLNIQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 701 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
++|.+.+..+..+..+++|++|++++|+++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 665443322223355566666666666554
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=2e-12 Score=150.41 Aligned_cols=140 Identities=17% Similarity=0.226 Sum_probs=115.8
Q ss_pred cccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccC
Q 003950 588 TTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGK 667 (784)
Q Consensus 588 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~ 667 (784)
.+..+.+|+.|++++|.+..+..... .+++|++|+|++|.+. .+|..|+++++|++|+|++|.+. .+|..++.
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~-----~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIF-----KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGG-----GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred hhccCCCCcEEECCCCCCCCCChhhc-----CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 35577899999999999876544322 7899999999999777 89999999999999999998855 88999999
Q ss_pred CCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCC-CCCEEeccCCCCC-CcChh
Q 003950 668 LVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELC-SLKTLCLKGCSMF-ELPSS 735 (784)
Q Consensus 668 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~-~L~~L~l~~n~l~-~lp~~ 735 (784)
|++|++|+|++|.+ +.+|..++.+++|+.|+|++|.+.+.+|..+..+. .+..|++++|.++ .+|..
T Consensus 292 l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 292 CFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp GTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 99999999999765 58899999999999999999999888888776543 2234789999987 55543
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.29 E-value=8.2e-11 Score=118.05 Aligned_cols=192 Identities=17% Similarity=0.133 Sum_probs=115.5
Q ss_pred CCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
...++||+..++.+..++.... .+.+.|+|++|+||||+|+.+++. ....+.. . ...+. .... ...+....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~-~-~~~~~---~~~~-~~~~~~~~ 93 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG--LNCETGI-T-ATPCG---VCDN-CREIEQGR 93 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCS-C-SSCCS---CSHH-HHHHHTTC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCC-C-CCCCc---ccHH-HHHHhccC
Confidence 3568999999999999998544 468999999999999999999873 3222111 0 00000 0000 00111000
Q ss_pred CCCCCC-CCChHHHHHHHHHHhcc-----cCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEecccccc-----
Q 003950 215 GYAVPE-FQTDEDAINDLERLLKP-----IRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFP----- 279 (784)
Q Consensus 215 ~~~~~~-~~~~~~~~~~l~~~~~~-----l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~----- 279 (784)
...... ..........+..+++. ..+++.+||+||++..... ++..+.....+..+|+||+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp CSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred CcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH
Confidence 000000 00000111222233322 2467899999999765433 33444444557888888876521
Q ss_pred -cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhh
Q 003950 280 -QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGS 338 (784)
Q Consensus 280 -~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 338 (784)
.....+.+++++.++..+++...+...+. .-.++..+.|++.|+|.|..+..+...
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11247899999999999999887754332 223677889999999999988866543
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.8e-11 Score=114.82 Aligned_cols=133 Identities=14% Similarity=0.047 Sum_probs=103.4
Q ss_pred CCEEEecccCCCCccccccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEcc
Q 003950 574 LKRIRLEHVSLPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRIT 653 (784)
Q Consensus 574 L~~L~L~~n~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 653 (784)
.+.++++++.++.++....++|+.|++.+|.+..+.... +..+++|++|++++|.+.+..+..+.++++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHH----hcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 456777777777665555678888888888776544332 2368899999999998776666678999999999999
Q ss_pred CCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccc
Q 003950 654 NCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELP 710 (784)
Q Consensus 654 ~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 710 (784)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 988666555667899999999999987765545556889999999999998776554
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.27 E-value=1.1e-10 Score=115.26 Aligned_cols=177 Identities=15% Similarity=0.138 Sum_probs=116.8
Q ss_pred CCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccccc-ccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQV-LGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
...++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++ .. ...+....+.++.+.......+...+....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 356899999999999999876655699999999999999999987 33 223333333444444333333222221111
Q ss_pred CCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCCc
Q 003950 215 GYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGSG 284 (784)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~~ 284 (784)
... ....+++.+||+||++..... +...+....++.++|+||+... ......
T Consensus 94 ~~~------------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 94 RTA------------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp TSC------------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ccc------------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 100 011467899999999776533 3334444456788898887652 111227
Q ss_pred eeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 285 YDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 285 ~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
+.+++++.++..+++.+.+...+. .-.++..+.|++.++|.|..+..+
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999999887654332 123677888999999999866543
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.27 E-value=4e-13 Score=154.12 Aligned_cols=234 Identities=14% Similarity=0.153 Sum_probs=144.6
Q ss_pred cccChhccCCCCCcEEEeecccccCCcCcCccccCCCCCCCEEEecccCCCCc----cccccccCceeeeeecc------
Q 003950 535 YTLPKFLEKMDKLKVMIVTNYGFFPAELSNIQVFGALSNLKRIRLEHVSLPSL----TTVRMKHLQNVSLVMCN------ 604 (784)
Q Consensus 535 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~L~~L~l~~~~------ 604 (784)
..+|..+..+++|++|++++|.+.+..+. ..+..+++|+.|++++| +... ....+++|+.|++.++.
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~~l~~~~l~--~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~ 355 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLV--KLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTCCCCHHHHH--HHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred hhHHHHHHhhCCCCEEEccCCCCCHHHHH--HHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccccc
Confidence 34555556778888888887653221111 11456788888888877 3322 11246788888885531
Q ss_pred ccccccCccccccccCCceEEEEEeCCCCCCCCCcccC-CCCCCcEEEcc-----CCCCCCCCc------hhccCCCCCC
Q 003950 605 VDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLC-DIVSIKKLRIT-----NCHKLSALP------EGIGKLVNLQ 672 (784)
Q Consensus 605 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~-~l~~L~~L~L~-----~~~~~~~lp------~~l~~l~~L~ 672 (784)
...+.......+...+++|++|.+..|.+....+..+. .+++|+.|+++ +|..++..| ..+..+++|+
T Consensus 356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~ 435 (594)
T 2p1m_B 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435 (594)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence 11222222222333578888887776665554444443 47888888888 344444332 2356778888
Q ss_pred EEEeecCCCCCCCcccccC-CCCCCEEeccCCCCCCccchhh-hCCCCCCEEeccCCCCCC--cChhhhCCCCCCEEeCC
Q 003950 673 MLTLASCTDLSALPDTIGN-LSNLNFLDISECLNIQELPERI-GELCSLKTLCLKGCSMFE--LPSSILNLENLEVVKCD 748 (784)
Q Consensus 673 ~L~L~~~~~~~~~p~~~~~-l~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~ 748 (784)
+|++++ .+....+..+.. +++|+.|++++|.+....+..+ ..+++|++|++++|.++. ++..+..+++|+.|+++
T Consensus 436 ~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 436 RLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp EEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred EEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 988876 444444444544 7889999998887655444444 668889999999988863 22344568888888887
Q ss_pred CCchh--cHHHHhhcCCCcEEeeecc
Q 003950 749 EETAY--QWEYFQLGQAKFRIEVIQE 772 (784)
Q Consensus 749 ~~~~~--~~~~~~~~lp~L~i~~~~~ 772 (784)
++... ....+...+|+|++...+.
T Consensus 515 ~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 515 SCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp SSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 77552 2444545588888776654
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.25 E-value=3.8e-12 Score=145.91 Aligned_cols=199 Identities=11% Similarity=-0.028 Sum_probs=130.8
Q ss_pred CCCCCCCEEEecccCCCCcc----ccccccCceeeeeeccccccccCccccccccCCceEEEEEeC----------CCCC
Q 003950 569 GALSNLKRIRLEHVSLPSLT----TVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDY----------CNDL 634 (784)
Q Consensus 569 ~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~----------~~~~ 634 (784)
..+++|++|++++|.++... ...+++|+.|++.++.. ......+...+++|++|++++ |+..
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~----~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG----DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH----HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC----HHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 45667777777777755431 24567777777763211 111222334678899999984 4333
Q ss_pred C-C-CCcccCCCCCCcEEEccCCCCCCCCchhccC-CCCCCEEEeec---CCCCCC------CcccccCCCCCCEEeccC
Q 003950 635 I-E-LPDGLCDIVSIKKLRITNCHKLSALPEGIGK-LVNLQMLTLAS---CTDLSA------LPDTIGNLSNLNFLDISE 702 (784)
Q Consensus 635 ~-~-lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~-l~~L~~L~L~~---~~~~~~------~p~~~~~l~~L~~L~l~~ 702 (784)
+ . ++.....+++|++|+++.|.+....+..++. +++|++|++++ |+..+. ++..+.++++|+.|+++.
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 2 1 2232445889999999777666666666665 89999999974 344444 333467789999999976
Q ss_pred CC--CCCccchhhh-CCCCCCEEeccCCCCC--CcChhhhCCCCCCEEeCCCCchhc--HHHHhhcCCCcEEeeec
Q 003950 703 CL--NIQELPERIG-ELCSLKTLCLKGCSMF--ELPSSILNLENLEVVKCDEETAYQ--WEYFQLGQAKFRIEVIQ 771 (784)
Q Consensus 703 n~--~~~~~p~~l~-~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~~~~~~--~~~~~~~lp~L~i~~~~ 771 (784)
|. .....+..++ .+++|++|++++|.++ .++..+..+++|+.|++++|.... ...+...+|+|+.....
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEE
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECc
Confidence 54 3444444444 4899999999999988 456667889999999999987432 34444458888544433
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.7e-11 Score=116.23 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=84.2
Q ss_pred CCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchh-ccCCCCCCEEEeecCCCCCCCcc--cccCCCCCC
Q 003950 620 FPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEG-IGKLVNLQMLTLASCTDLSALPD--TIGNLSNLN 696 (784)
Q Consensus 620 l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~p~--~~~~l~~L~ 696 (784)
.++|++|++++|.+.+. ..++.+++|++|++++|.+. .+|.. ++.+++|++|++++|.+ +.+|. .+..+++|+
T Consensus 41 ~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLT 116 (176)
T ss_dssp TTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCC
T ss_pred CCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCC
Confidence 44788888888866553 56888899999999998754 45544 48899999999998765 56676 788899999
Q ss_pred EEeccCCCCCCccchh----hhCCCCCCEEeccCCCCCC
Q 003950 697 FLDISECLNIQELPER----IGELCSLKTLCLKGCSMFE 731 (784)
Q Consensus 697 ~L~l~~n~~~~~~p~~----l~~l~~L~~L~l~~n~l~~ 731 (784)
+|++++|.+. .+|.. ++.+++|+.|++++|.+.+
T Consensus 117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999998654 56654 8889999999999998653
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.17 E-value=4.7e-12 Score=145.21 Aligned_cols=249 Identities=14% Similarity=0.098 Sum_probs=155.2
Q ss_pred CCceEEEEEecCCCCcccChhccCCCCCcEEEeecccc---------cCCcCc-----------------Ccc-ccCCCC
Q 003950 520 APEVKVVVLNVRTKKYTLPKFLEKMDKLKVMIVTNYGF---------FPAELS-----------------NIQ-VFGALS 572 (784)
Q Consensus 520 ~~~l~~l~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~~---------~~~~~~-----------------~l~-~l~~l~ 572 (784)
+++++.+.+..+.....+|..+..+++|+.|++..+.. ++..+. .++ .+..++
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence 46666666665533333566666666777766543210 000000 011 012568
Q ss_pred CCCEEEecccCCCCcc----ccccccCceeeeeeccccccccCccccccccCCceEEEEEeCC---------CCCCCCCc
Q 003950 573 NLKRIRLEHVSLPSLT----TVRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYC---------NDLIELPD 639 (784)
Q Consensus 573 ~L~~L~L~~n~l~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~---------~~~~~lp~ 639 (784)
+|++|++++|.++... ...+++|+.|++.+| +. ......+...+++|+.|++.+| .+......
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~---~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE---DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH---HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC---HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 8999999998876531 346789999999987 22 1122223335889999999543 12111111
Q ss_pred cc-CCCCCCcEEEccCCCCCCCCchhcc-CCCCCCEEEee-----cCCCCCCCc------ccccCCCCCCEEeccCCCCC
Q 003950 640 GL-CDIVSIKKLRITNCHKLSALPEGIG-KLVNLQMLTLA-----SCTDLSALP------DTIGNLSNLNFLDISECLNI 706 (784)
Q Consensus 640 ~i-~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~-----~~~~~~~~p------~~~~~l~~L~~L~l~~n~~~ 706 (784)
.+ .++++|++|.++.|.+....+..+. .+++|++|+++ +|+..+..| ..+..+++|+.|++++ ...
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 22 2478999998877665555455554 58999999999 455555433 2367789999999987 455
Q ss_pred CccchhhhC-CCCCCEEeccCCCCCC-cChhh-hCCCCCCEEeCCCCchhcH--HHHhhcCCCcEEeeeccc
Q 003950 707 QELPERIGE-LCSLKTLCLKGCSMFE-LPSSI-LNLENLEVVKCDEETAYQW--EYFQLGQAKFRIEVIQED 773 (784)
Q Consensus 707 ~~~p~~l~~-l~~L~~L~l~~n~l~~-lp~~l-~~l~~L~~L~l~~~~~~~~--~~~~~~lp~L~i~~~~~~ 773 (784)
...+..++. +++|+.|++++|.++. .+..+ ..+++|+.|++++|..... ..+...+|+|+.....+|
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 555555655 8999999999999873 22333 6799999999998876332 333344777754444433
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=9.6e-13 Score=127.53 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=58.5
Q ss_pred ccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCC
Q 003950 640 GLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSL 719 (784)
Q Consensus 640 ~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L 719 (784)
.++.+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ +| .++.+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 5555556666666555432 244 5555556666666555433 455555555556666666554332 34 45555566
Q ss_pred CEEeccCCCCCCcCh--hhhCCCCCCEEeCCCCch
Q 003950 720 KTLCLKGCSMFELPS--SILNLENLEVVKCDEETA 752 (784)
Q Consensus 720 ~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~~~~ 752 (784)
+.|++++|.++.+|. .+..+++|+.|++++|..
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 666666666555443 455556666666655544
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=2.1e-10 Score=108.09 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=71.3
Q ss_pred EEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCC
Q 003950 624 LEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISEC 703 (784)
Q Consensus 624 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n 703 (784)
+.+++++|. ++.+|..+. ++|++|+|++|.+.+..|..++.+++|++|+|++|.+.+..+..+..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 456666653 355666553 67777777777766555667777777777777776655443444577777777777777
Q ss_pred CCCCccchhhhCCCCCCEEeccCCCCCCcCh
Q 003950 704 LNIQELPERIGELCSLKTLCLKGCSMFELPS 734 (784)
Q Consensus 704 ~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~ 734 (784)
.+.+..+..+..+++|++|++++|.+...|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 5554333347777778888887777765544
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=8.9e-13 Score=127.76 Aligned_cols=123 Identities=17% Similarity=0.153 Sum_probs=93.7
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
.+++|++|++++|.+.+ +| .+.++++|++|++++|. +..+|..+..+++|++|++++|.+.+ +| .+..+++|++|
T Consensus 46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL 120 (198)
T ss_dssp HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence 67788888888876555 66 68888889999998876 44678777778889999998876654 55 57888889999
Q ss_pred eccCCCCCCccc-hhhhCCCCCCEEeccCCCCCCcCh-----------hhhCCCCCCEEe
Q 003950 699 DISECLNIQELP-ERIGELCSLKTLCLKGCSMFELPS-----------SILNLENLEVVK 746 (784)
Q Consensus 699 ~l~~n~~~~~~p-~~l~~l~~L~~L~l~~n~l~~lp~-----------~l~~l~~L~~L~ 746 (784)
++++|.+...-+ ..+..+++|++|++++|.++..++ .+..+++|+.|+
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999886544222 367888999999999998764432 267888888887
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.8e-10 Score=106.93 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccC
Q 003950 623 LLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISE 702 (784)
Q Consensus 623 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 702 (784)
.+.+++++|.+ ..+|..+. ++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l-~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSL-ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCc-CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 34566666543 34565443 6777777777766555566677777777777777666554445567777777777777
Q ss_pred CCCCCccchhhhCCCCCCEEeccCCCCC
Q 003950 703 CLNIQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 703 n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
|.+.+..+..+..+++|++|++++|+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7555444445677777777777777765
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=6.6e-10 Score=104.68 Aligned_cols=103 Identities=20% Similarity=0.180 Sum_probs=89.3
Q ss_pred CcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccC
Q 003950 647 IKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKG 726 (784)
Q Consensus 647 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 726 (784)
-+.+++++|. ++.+|..+. ++|++|+|++|.+.+..|..+.++++|+.|+|++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3789999875 678888764 8999999999998888888999999999999999976654444568999999999999
Q ss_pred CCCCCcChh-hhCCCCCCEEeCCCCch
Q 003950 727 CSMFELPSS-ILNLENLEVVKCDEETA 752 (784)
Q Consensus 727 n~l~~lp~~-l~~l~~L~~L~l~~~~~ 752 (784)
|.|+.+|.. +..+++|+.|++++|..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred CccceeCHHHhccccCCCEEEeCCCCc
Confidence 999999875 89999999999998864
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=7.5e-10 Score=103.96 Aligned_cols=104 Identities=20% Similarity=0.196 Sum_probs=90.1
Q ss_pred CCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEecc
Q 003950 646 SIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLK 725 (784)
Q Consensus 646 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 725 (784)
..+.+++++|. +..+|..+ .++|++|+|++|.+.+..|..+..+++|+.|+|++|.+.+..+..+..+++|++|+++
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35789999976 66688766 4899999999998888888899999999999999997765555567899999999999
Q ss_pred CCCCCCcChh-hhCCCCCCEEeCCCCch
Q 003950 726 GCSMFELPSS-ILNLENLEVVKCDEETA 752 (784)
Q Consensus 726 ~n~l~~lp~~-l~~l~~L~~L~l~~~~~ 752 (784)
+|.|+.+|.. +.++++|+.|++++|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 9999988864 88999999999999854
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=8.7e-10 Score=115.88 Aligned_cols=101 Identities=11% Similarity=-0.015 Sum_probs=49.7
Q ss_pred CCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCC-EEeccCCCCCCccchhhhCCCCCCEE
Q 003950 644 IVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLN-FLDISECLNIQELPERIGELCSLKTL 722 (784)
Q Consensus 644 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~-~L~l~~n~~~~~~p~~l~~l~~L~~L 722 (784)
+++|+.|+|++|.+...-+..+..+++|+.|++.+| +...-+..|.++++|+ .|++.+ .....-+..|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 445555555554422222234555555555555553 2222234455555555 555554 2222223445555555555
Q ss_pred eccCCCCCCcCh-hhhCCCCCCEEe
Q 003950 723 CLKGCSMFELPS-SILNLENLEVVK 746 (784)
Q Consensus 723 ~l~~n~l~~lp~-~l~~l~~L~~L~ 746 (784)
++++|.++.++. .+.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 555555555543 445555555554
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=2.1e-09 Score=112.67 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=115.6
Q ss_pred CCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
...++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++ .+. ..+...+++++.++...... ++.+++.+
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~ 96 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGIDV-VRNQIKHF 96 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHHH-HHTHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccChHH-HHHHHHHH
Confidence 356899999999999999876655599999999999999999987 332 22222233444433323222 22222211
Q ss_pred CCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCC
Q 003950 215 GYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGS 283 (784)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~ 283 (784)
. .....+ .+++.+||+||++..... +...+....+++.+|+||+... .....
T Consensus 97 ~-----------------~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 97 A-----------------QKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp H-----------------HBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred H-----------------hccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 1 000112 456899999999775532 3444444456788888887642 12223
Q ss_pred ceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhH-HHHHH
Q 003950 284 GYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLA-LTVVG 336 (784)
Q Consensus 284 ~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLa-i~~~~ 336 (784)
.+.+++++.++..+++...+...+. .-.++.+..|++.++|.|.. +..+.
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDV---KYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7899999999999999887643322 12367788999999999954 44443
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.03 E-value=8.6e-09 Score=108.03 Aligned_cols=169 Identities=18% Similarity=0.138 Sum_probs=108.6
Q ss_pred CCCCCCCCchhHHHHHHHHh-----CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELFK-----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
-..++|++..++.+..++.. .....|.|+|++|+|||++|+.+++ ... ...++++.+......++
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~----~~~~~~~~~~~~~~~~l---- 80 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELG----VNLRVTSGPAIEKPGDL---- 80 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHT----CCEEEECTTTCCSHHHH----
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhC----CCEEEEeccccCChHHH----
Confidence 45789999999998888762 3457799999999999999999987 322 22335544333222221
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhcc------------------CCCc
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQ------------------LPYY 268 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~------------------~~gs 268 (784)
...+..-..+..+|++||+...... +...+... .++.
T Consensus 81 ---------------------~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 81 ---------------------AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ---------------------HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ---------------------HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 1222111245668999999776533 22222211 1245
Q ss_pred eEEEeccccc-------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHHhh
Q 003950 269 KILVTSRSVF-------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVGGS 338 (784)
Q Consensus 269 ~iivTtR~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 338 (784)
.+|.||.... ......+.+++++.++..+++...+...+. .-.++..+.+++.+.|.|-.+..+...
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 6777766431 112247899999999999998887654332 123678899999999999877765443
No 155
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.01 E-value=8.2e-11 Score=101.06 Aligned_cols=55 Identities=22% Similarity=0.187 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHHhhhhhHHHHHHh--hhhcCCChhHHHHHHHHHHhhhHhhhhcCc
Q 003950 2 FKDLLEQLESTLQNSTPMIKEIEKL--NQVLDLPKHETDTLIEMMRRGEHLVHKCSR 56 (784)
Q Consensus 2 ~~~~~~~L~~~l~~i~~~l~~ae~~--~~~~~~~~~wl~~l~~~~~~aed~ld~~~~ 56 (784)
|++++++|+++|++|++||++|+++ +..+..++.|+++||+++||+||++|+|.+
T Consensus 24 v~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 24 VKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999987 456777899999999999999999999998
No 156
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=5.9e-09 Score=109.43 Aligned_cols=175 Identities=17% Similarity=0.249 Sum_probs=113.3
Q ss_pred CCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++ .+.. .+....+.++.++..... .++.
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~-~~~~----- 95 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGIN-VIRE----- 95 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHHH-TTHH-----
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCchH-HHHH-----
Confidence 356899999999999999877666699999999999999999987 3322 222212233332211111 1111
Q ss_pred CCCCCCCCChHHHHHHHHHHh--ccc-CCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEecccccc------cC
Q 003950 215 GYAVPEFQTDEDAINDLERLL--KPI-RPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFP------QF 281 (784)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~--~~l-~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~------~~ 281 (784)
.+.... ..+ .+++.++|+||++..... +...+....+++++|+||..... ..
T Consensus 96 ---------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 96 ---------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp ---------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred ---------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 111111 111 267889999999776533 44444445567888888876421 11
Q ss_pred CCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHH
Q 003950 282 GSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVG 336 (784)
Q Consensus 282 ~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 336 (784)
...+.+++++.++..+++...+...+. .-.++..+.|++.++|.|..+..+.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGL---ELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTC---EECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 237889999999999999887654332 1236778899999999998665433
No 157
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=2.6e-10 Score=121.46 Aligned_cols=157 Identities=20% Similarity=0.183 Sum_probs=104.2
Q ss_pred CCCCCEEEecccCCCCccc---c-----ccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCccc-
Q 003950 571 LSNLKRIRLEHVSLPSLTT---V-----RMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGL- 641 (784)
Q Consensus 571 l~~L~~L~L~~n~l~~~~~---~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i- 641 (784)
+++|+.|++++|.++.... . ...+|+.|++++|.+.... ...+...+++|+.|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG---LRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH---HHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH---HHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 4578899999998876411 1 2367888888888764321 11222345678888888886654322222
Q ss_pred ----CCCCCCcEEEccCCCCCC----CCchhccCCCCCCEEEeecCCCCC----CCcccccCCCCCCEEeccCCCCCC--
Q 003950 642 ----CDIVSIKKLRITNCHKLS----ALPEGIGKLVNLQMLTLASCTDLS----ALPDTIGNLSNLNFLDISECLNIQ-- 707 (784)
Q Consensus 642 ----~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~~~----~~p~~~~~l~~L~~L~l~~n~~~~-- 707 (784)
...++|++|+|++|.+.. .++..+..+++|++|+|++|.+.. .++..+...++|+.|+|++|.+..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 345678888888886533 244555778888888888877543 234556677788888888886654
Q ss_pred --ccchhhhCCCCCCEEeccCCCCC
Q 003950 708 --ELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 708 --~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
.++..+...++|++|++++|.|+
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 24445556788888888888887
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=2.6e-10 Score=121.44 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=103.0
Q ss_pred CCCCcEEEeecccccCCcCcCccc-c-CCCCCCCEEEecccCCCCc----cccccccCceeeeeeccccccccCcccccc
Q 003950 544 MDKLKVMIVTNYGFFPAELSNIQV-F-GALSNLKRIRLEHVSLPSL----TTVRMKHLQNVSLVMCNVDQVVQNSTFHFS 617 (784)
Q Consensus 544 l~~L~~L~l~~~~~~~~~~~~l~~-l-~~l~~L~~L~L~~n~l~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 617 (784)
+++|+.|++++|.+.+.....+.. + ...++|+.|+|++|.++.. ....+.+|+.|++++|.+............
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467788888877553332222111 1 2336788888888887653 223456788888888876543222211111
Q ss_pred -ccCCceEEEEEeCCCCCC----CCCcccCCCCCCcEEEccCCCCCC----CCchhccCCCCCCEEEeecCCCCC----C
Q 003950 618 -DAFPNLLEIDIDYCNDLI----ELPDGLCDIVSIKKLRITNCHKLS----ALPEGIGKLVNLQMLTLASCTDLS----A 684 (784)
Q Consensus 618 -~~l~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~~~----~ 684 (784)
...++|++|+|++|.+.. .++..+..+++|++|+|++|.+.. .++..+...++|++|+|++|.+.. .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 235678888888886543 244445667788888888876432 234556667788888888877653 2
Q ss_pred CcccccCCCCCCEEeccCCCCCCccchhh
Q 003950 685 LPDTIGNLSNLNFLDISECLNIQELPERI 713 (784)
Q Consensus 685 ~p~~~~~l~~L~~L~l~~n~~~~~~p~~l 713 (784)
++..+...++|++|+|++|.+...-...+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 34445566788888888886554333333
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.82 E-value=9.3e-09 Score=108.92 Aligned_cols=102 Identities=21% Similarity=0.119 Sum_probs=55.9
Q ss_pred EEeCCCCCCCCCcccCCCCCCcEEEccC-CCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCC
Q 003950 627 DIDYCNDLIELPDGLCDIVSIKKLRITN-CHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLN 705 (784)
Q Consensus 627 ~L~~~~~~~~lp~~i~~l~~L~~L~L~~-~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~ 705 (784)
++++++.+..+|. +..+.+|++|+|++ |.+.+..|..++.|++|++|+|++|.+.+..|..|.++++|+.|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 4444323344555 66666666666664 543333334566666666666666655555555566666666666666644
Q ss_pred CCccchhhhCCCCCCEEeccCCCCC
Q 003950 706 IQELPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 706 ~~~~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
.+..+..+..++ |+.|++.+|.+.
T Consensus 93 ~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ceeCHHHcccCC-ceEEEeeCCCcc
Confidence 432222233333 666666666654
No 160
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=9.5e-09 Score=107.91 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=84.1
Q ss_pred CCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCc-hhccCCCCCC-EEEeecCCCCCCCcccccCCCCCCE
Q 003950 620 FPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALP-EGIGKLVNLQ-MLTLASCTDLSALPDTIGNLSNLNF 697 (784)
Q Consensus 620 l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~-~L~L~~~~~~~~~p~~~~~l~~L~~ 697 (784)
+++|+.|+|++|.+....+..|.++.+|+.|+|.+| +..++ .++..+++|+ .|++.+ .....-+..|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 789999999998766655667999999999999986 44454 6788999999 999987 555455688999999999
Q ss_pred EeccCCCCCCccchhhhCCCCCCEEec
Q 003950 698 LDISECLNIQELPERIGELCSLKTLCL 724 (784)
Q Consensus 698 L~l~~n~~~~~~p~~l~~l~~L~~L~l 724 (784)
|++++|.....-+..|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 999888666555668899999999864
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.4e-08 Score=107.50 Aligned_cols=104 Identities=17% Similarity=0.031 Sum_probs=87.9
Q ss_pred EEEccCCCCCCCCchhccCCCCCCEEEeec-CCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCC
Q 003950 649 KLRITNCHKLSALPEGIGKLVNLQMLTLAS-CTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGC 727 (784)
Q Consensus 649 ~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~-~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 727 (784)
.++++++..+..+|. +..+++|++|+|++ |.+.+..|..|+++++|+.|+|++|.+.+..|..|+.|++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 568887624677998 99999999999996 6666666678999999999999999888877888999999999999999
Q ss_pred CCCCcChhhhCCCCCCEEeCCCCchh
Q 003950 728 SMFELPSSILNLENLEVVKCDEETAY 753 (784)
Q Consensus 728 ~l~~lp~~l~~l~~L~~L~l~~~~~~ 753 (784)
.|+.+|..+....+|+.|++.+|...
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 99999876655445999999988653
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.75 E-value=1.4e-07 Score=100.85 Aligned_cols=188 Identities=18% Similarity=0.133 Sum_probs=110.0
Q ss_pred CCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 137 PVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
..++|++..++.+...+..+. .+.+.|+|++|+||||+|+.+++. ....... . ...+... .....+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~--l~~~~~~-~-~~~~~~~----~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG--LNCETGI-T-ATPCGVC----DNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHH--HSCTTCS-C-SSCCSSS----HHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHH--hCCCCCC-C-CCCCccc----HHHHHHhccCC
Confidence 468999999999999998654 467899999999999999999873 2211100 0 0000000 00111110000
Q ss_pred C-----CCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------
Q 003950 216 Y-----AVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------ 278 (784)
Q Consensus 216 ~-----~~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------ 278 (784)
. ........+. ...+...+ ....+++.+||+||+...... ++..+....++..+|++|....
T Consensus 88 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 0 0000001111 11222222 123567889999999765532 3444444445677777776541
Q ss_pred ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHHH
Q 003950 279 PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVVG 336 (784)
Q Consensus 279 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 336 (784)
......+.+.+++.++..+++...+...+. .-.++....|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 112347899999999999999876643322 1236678899999999998776543
No 163
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.74 E-value=6.2e-08 Score=99.12 Aligned_cols=162 Identities=9% Similarity=0.121 Sum_probs=104.0
Q ss_pred CCCCCCchhHHHHHHHH----hCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-----c-CCceEEEEeCCCCCHHHHH
Q 003950 138 VTPGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK-----F-KDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-----f-~~~~~wv~~~~~~~~~~~~ 207 (784)
.+.||++++++|...|. .+..+.+.|+|++|+|||++|+.+++. +... . ....+.+++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 36899999999988877 456788999999999999999999983 3221 1 1224577777778889999
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHhccc---CCCcEEEEEeCCCCCc-hHHHhh-hhc-cCCCce--EEEecccc-c
Q 003950 208 QKVYQHKGYAVPEFQTDEDAINDLERLLKPI---RPEAILLVLDDVWSGS-ESLLQK-FKF-QLPYYK--ILVTSRSV-F 278 (784)
Q Consensus 208 ~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l---~~kr~LlVlDdv~~~~-~~~~~~-~~~-~~~gs~--iivTtR~~-~ 278 (784)
..|++++.+..... ......+..++..+ .++++++|||+++... +.++-. +.+ ...+++ ||.++... .
T Consensus 99 ~~I~~~L~g~~~~~---~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 99 EKIWFAISKENLCG---DISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHSCCC--C---CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHhcCCCCCc---hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 99999996542211 11233455555332 5678999999986643 222322 222 123333 33334322 0
Q ss_pred ----------ccCC-CceeccCCCHHHHHHHHHHHhc
Q 003950 279 ----------PQFG-SGYDLKPLNDEAARTLFRYSAN 304 (784)
Q Consensus 279 ----------~~~~-~~~~l~~L~~~~a~~lf~~~a~ 304 (784)
.... ..+.+++++.+|-.+++.+++.
T Consensus 176 ~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 0122 3688999999999999987763
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.70 E-value=5.1e-08 Score=101.80 Aligned_cols=176 Identities=16% Similarity=0.180 Sum_probs=110.5
Q ss_pred CCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccccc-ccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQV-LGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-..++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++ .+ ...+...++.++.+.......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~--------- 84 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDV--------- 84 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEETTSTTCTTT---------
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEeCccccChHH---------
Confidence 356899999999998888866655599999999999999999987 33 122222233444433211110
Q ss_pred CCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCC
Q 003950 215 GYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGS 283 (784)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~ 283 (784)
........... ..+ .+++.++|+|++...... +...+....+++++|+||.... .....
T Consensus 85 ---------~~~~~~~~~~~-~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 85 ---------VRHKIKEFART-APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp ---------SSHHHHHHHHS-CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred ---------HHHHHHHHHhc-CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 00111111100 111 367889999999766533 2233333345677888876542 12233
Q ss_pred ceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 284 GYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 284 ~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
.+.+.+++.++..+++...+...+. .-.++....+++.++|.+..+...
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCC---CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999999999877644332 123677889999999999765543
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.66 E-value=3.9e-07 Score=97.84 Aligned_cols=173 Identities=16% Similarity=0.109 Sum_probs=77.0
Q ss_pred cCCCCCCCEEEecccCCCCccc--cccccCceeeeeeccccccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCC
Q 003950 568 FGALSNLKRIRLEHVSLPSLTT--VRMKHLQNVSLVMCNVDQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIV 645 (784)
Q Consensus 568 l~~l~~L~~L~L~~n~l~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~ 645 (784)
|.+|.+|+.+++.+|.++.+.. ....+|+.+.+..+ +..+.... +..+++|+.+++..+ ....-...|.+ .
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~a----F~~~~~L~~l~l~~~-l~~I~~~aF~~-~ 248 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQA----FLKTSQLKTIEIPEN-VSTIGQEAFRE-S 248 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTT----TTTCTTCCCEECCTT-CCEECTTTTTT-C
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhH----hhCCCCCCEEecCCC-ccCcccccccc-C
Confidence 5566666666666665544411 11345555555422 22222221 124555555555542 22112223333 4
Q ss_pred CCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCC-----CCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCC
Q 003950 646 SIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDL-----SALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLK 720 (784)
Q Consensus 646 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~-----~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 720 (784)
+|+.+.|.+ .....-+.++..+++|+.+.+.++... ..-+..|.++++|+.+.+.++ ....-...|..|++|+
T Consensus 249 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCC
T ss_pred CccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCcc
Confidence 555555533 222222334555555555555543322 122344555555555555532 2222223444555555
Q ss_pred EEeccCCCCCCcC-hhhhCCCCCCEEeCCCCc
Q 003950 721 TLCLKGCSMFELP-SSILNLENLEVVKCDEET 751 (784)
Q Consensus 721 ~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~~~ 751 (784)
.+.+..+ ++.++ ..+.++ +|+.+.+.++.
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 5555332 44333 234445 55555555443
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.63 E-value=4.8e-07 Score=97.13 Aligned_cols=206 Identities=10% Similarity=0.088 Sum_probs=145.6
Q ss_pred CCCcccC-hhccCCCCCcEEEeecccc--cCCcCcCccccCCCCCCCEEEecccCCCCc---cccccccCceeeeeeccc
Q 003950 532 TKKYTLP-KFLEKMDKLKVMIVTNYGF--FPAELSNIQVFGALSNLKRIRLEHVSLPSL---TTVRMKHLQNVSLVMCNV 605 (784)
Q Consensus 532 ~~~~~~p-~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~l~~~~~ 605 (784)
+....++ .+|.++++|+.+++..|.. ++... |. +.+|+.+.+..+ +..+ .+..+.+|+.+.+..+ +
T Consensus 166 ~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a-----F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l 237 (401)
T 4fdw_A 166 STLEQLKEDIFYYCYNLKKADLSKTKITKLPAST-----FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-V 237 (401)
T ss_dssp TTCCEECSSTTTTCTTCCEEECTTSCCSEECTTT-----TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-C
T ss_pred CCccEehHHHhhCcccCCeeecCCCcceEechhh-----Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-c
Confidence 3334443 6789999999999987532 44432 44 578999999854 4443 5667888999998764 3
Q ss_pred cccccCccccccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCC-----CCCchhccCCCCCCEEEeecCC
Q 003950 606 DQVVQNSTFHFSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKL-----SALPEGIGKLVNLQMLTLASCT 680 (784)
Q Consensus 606 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~-----~~lp~~l~~l~~L~~L~L~~~~ 680 (784)
..+....+ . . .+|+.+.+..+ ....-+..|.++++|+.+++.++... ..-+..+..+++|+.+.+.. +
T Consensus 238 ~~I~~~aF---~-~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~ 310 (401)
T 4fdw_A 238 STIGQEAF---R-E-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S 310 (401)
T ss_dssp CEECTTTT---T-T-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T
T ss_pred cCcccccc---c-c-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c
Confidence 33333222 2 3 68999999643 44444678899999999999886432 13346788999999999985 4
Q ss_pred CCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcC-hhhhCCC-CCCEEeCCCCchhc
Q 003950 681 DLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELP-SSILNLE-NLEVVKCDEETAYQ 754 (784)
Q Consensus 681 ~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp-~~l~~l~-~L~~L~l~~~~~~~ 754 (784)
....-...|.++++|+.+.|..+ ....-+..|.++ +|+.+.+.+|.+..++ ..+..++ ++..|++..+....
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHH
Confidence 44444567889999999999765 444445567888 9999999999987665 3456664 78899998775544
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=7.7e-07 Score=94.29 Aligned_cols=188 Identities=16% Similarity=0.130 Sum_probs=113.4
Q ss_pred CCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 136 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
-..++|++..++.+..++.......+.|+|++|+||||+|+.+++...-...+...++.++.++......+ ......+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFA 114 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHh
Confidence 45689999999999999886654459999999999999999998732111123333444444443333322 22222111
Q ss_pred C-CCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEecccccc------cCCCc
Q 003950 216 Y-AVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVFP------QFGSG 284 (784)
Q Consensus 216 ~-~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~~------~~~~~ 284 (784)
. ........ . .. . .-.+++-+|++|++...... ++..+.......++|++|..... .....
T Consensus 115 ~~~~~~~~~~--~----~~-~-~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 115 RLTVSKPSKH--D----LE-N-YPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HSCCCCCCTT--H----HH-H-SCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred hhcccccchh--h----cc-c-CCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 0 00000000 0 00 0 11345679999998765432 44444444556778887755421 11226
Q ss_pred eeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 285 YDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 285 ~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
+.+.+++.++..+.+...+...+. .-.++..+.|++.++|.|-.+..+
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENV---KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 889999999999998877643322 123678899999999999765443
No 168
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=5.1e-08 Score=102.76 Aligned_cols=150 Identities=20% Similarity=0.201 Sum_probs=94.6
Q ss_pred ccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhcc--CCCCCCEEEeecC--CCCC-----CCccc
Q 003950 618 DAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIG--KLVNLQMLTLASC--TDLS-----ALPDT 688 (784)
Q Consensus 618 ~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~--~l~~L~~L~L~~~--~~~~-----~~p~~ 688 (784)
..+|+|+.|+|++|... .+|. +. +++|+.|+|..|.+.......+. .+++|++|+|+.+ ...+ .+...
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 36788888888877322 3344 33 78899999987764433333343 6889999988632 1111 11122
Q ss_pred c--cCCCCCCEEeccCCCCCCccchhh---hCCCCCCEEeccCCCCCC-----cChhhhCCCCCCEEeCCCCchhc--HH
Q 003950 689 I--GNLSNLNFLDISECLNIQELPERI---GELCSLKTLCLKGCSMFE-----LPSSILNLENLEVVKCDEETAYQ--WE 756 (784)
Q Consensus 689 ~--~~l~~L~~L~l~~n~~~~~~p~~l---~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~~~~~~--~~ 756 (784)
+ ..+++|++|+|.+|......+..+ +.+++|++|+|+.|.++. ++..+.++++|+.|+++.|.... ..
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 2 357899999998886654333333 357889999999988873 45556678899999998875532 34
Q ss_pred HHhhcCCCcEEeeec
Q 003950 757 YFQLGQAKFRIEVIQ 771 (784)
Q Consensus 757 ~~~~~lp~L~i~~~~ 771 (784)
.+...+ ..+++...
T Consensus 326 ~l~~al-g~~~~~~~ 339 (362)
T 2ra8_A 326 ELQKSL-PMKIDVSD 339 (362)
T ss_dssp HHHHHC-CSEEECCS
T ss_pred HHHHHc-CCEEEecC
Confidence 455434 33444443
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.49 E-value=5.8e-07 Score=89.42 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=99.4
Q ss_pred CCCCCCC---chhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHH
Q 003950 137 PVTPGLD---VPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 137 ~~~vGr~---~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
..++|.+ ..++.+..+......+.+.|+|++|+||||+|+.+++ ...... ..+.++++++.... +
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~-~~~~~~~~~~~~~~------~--- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACA--RANELE-RRSFYIPLGIHASI------S--- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHH--HHHHTT-CCEEEEEGGGGGGS------C---
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcC-CeEEEEEHHHHHHH------H---
Confidence 4567643 3455555555555678899999999999999999987 333322 23567766432110 0
Q ss_pred cCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch------HHHhhhhcc-CCCc-eEEEecccccc---c--
Q 003950 214 KGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE------SLLQKFKFQ-LPYY-KILVTSRSVFP---Q-- 280 (784)
Q Consensus 214 l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~------~~~~~~~~~-~~gs-~iivTtR~~~~---~-- 280 (784)
...++.+ .++.+||+||++.... .+...+... ..+. ++|+||+.... .
T Consensus 96 ------------------~~~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 96 ------------------TALLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp ------------------GGGGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred ------------------HHHHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 0111111 4467899999865421 122222211 1232 48888775421 1
Q ss_pred --------CCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 281 --------FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 281 --------~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
.+..+.+++++.++..+++...+...+. .-.++..+.+++.++|.+-.+..+
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHH
Confidence 1146889999999999999887643322 123677889999999988766543
No 170
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=1.6e-06 Score=96.52 Aligned_cols=185 Identities=12% Similarity=0.133 Sum_probs=107.2
Q ss_pred CCCCCCCCchhHHHHHHHHh-----------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeC
Q 003950 136 PPVTPGLDVPLQELKLELFK-----------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS 198 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~-----------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~ 198 (784)
-..++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++ .. ...++.++.+
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~--~l----~~~~i~in~s 111 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ--EL----GYDILEQNAS 111 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH--HT----TCEEEEECTT
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH--Hc----CCCEEEEeCC
Confidence 35689999999999999873 1347899999999999999999997 33 2334455555
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch------HHHhhhhccCCCceEEE
Q 003950 199 QTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE------SLLQKFKFQLPYYKILV 272 (784)
Q Consensus 199 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~------~~~~~~~~~~~gs~iiv 272 (784)
+..... +....+........ . .......... ....+++.+|++|++..... ..+..+... .+..||+
T Consensus 112 ~~~~~~-~~~~~i~~~~~~~~-~---~~~~~~~~~~-~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIl 184 (516)
T 1sxj_A 112 DVRSKT-LLNAGVKNALDNMS-V---VGYFKHNEEA-QNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLIL 184 (516)
T ss_dssp SCCCHH-HHHHTGGGGTTBCC-S---TTTTTC-----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEE
T ss_pred CcchHH-HHHHHHHHHhcccc-H---HHHHhhhhhh-hhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEE
Confidence 444433 22322222211100 0 0000000000 01246789999999965431 112222222 2344665
Q ss_pred eccccc-------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch-hHHHHHH
Q 003950 273 TSRSVF-------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP-LALTVVG 336 (784)
Q Consensus 273 TtR~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 336 (784)
++.+.. ......+.+++++.++..+.+...+...+... .++....|++.++|.+ -++..+.
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i---~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL---DPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC---CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 554431 11223688999999999999887765443221 2456788999999955 4555443
No 171
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.43 E-value=2.9e-07 Score=88.03 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=39.9
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++||+.+++++.+.+.....+.+.|+|++|+|||++|+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999876677889999999999999999987
No 172
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=1.5e-07 Score=99.11 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=50.1
Q ss_pred CCCCCCEEEeecCCCCCCCcccc---cCCCCCCEEeccCCCCCCc----cchhhhCCCCCCEEeccCCCCCC-cChhhhC
Q 003950 667 KLVNLQMLTLASCTDLSALPDTI---GNLSNLNFLDISECLNIQE----LPERIGELCSLKTLCLKGCSMFE-LPSSILN 738 (784)
Q Consensus 667 ~l~~L~~L~L~~~~~~~~~p~~~---~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~l~~n~l~~-lp~~l~~ 738 (784)
.+++|++|+|.+|.+....+..+ ..+++|++|+|+.|.+... ++..+..+++|+.|++++|.++. .-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 46778888887766543222222 2467888888888765442 44445667888888888887762 1122222
Q ss_pred -CCCCCEEeCCCCc
Q 003950 739 -LENLEVVKCDEET 751 (784)
Q Consensus 739 -l~~L~~L~l~~~~ 751 (784)
+ ...++++.+.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3456666554
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.38 E-value=4.9e-06 Score=86.83 Aligned_cols=170 Identities=16% Similarity=0.134 Sum_probs=102.9
Q ss_pred CCCCCCCCchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 136 PPVTPGLDVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-..++|.+..++.+.+++..+. ..++.+.|++|+|||++|+.+++ .. ...++.++.+.. .. +.++..+...
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~--~l----~~~~~~i~~~~~-~~-~~i~~~~~~~ 96 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCH--DV----NADMMFVNGSDC-KI-DFVRGPLTNF 96 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHH--HT----TEEEEEEETTTC-CH-HHHHTHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHH--Hh----CCCEEEEccccc-CH-HHHHHHHHHH
Confidence 4578999999999999998554 46778888999999999999987 33 222445554332 22 2222222111
Q ss_pred CCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc-hH----HHhhhhccCCCceEEEecccccccC------CC
Q 003950 215 GYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS-ES----LLQKFKFQLPYYKILVTSRSVFPQF------GS 283 (784)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-~~----~~~~~~~~~~gs~iivTtR~~~~~~------~~ 283 (784)
. .. ....+++.+|++||+.... .. +...+....++.++|+||.....-. ..
T Consensus 97 ~-----------------~~-~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 97 A-----------------SA-ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp H-----------------HB-CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred H-----------------hh-cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 0 00 1124578899999998765 33 3333333345678888887652111 12
Q ss_pred ceeccCCCHHHHHHH-------HHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 284 GYDLKPLNDEAARTL-------FRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 284 ~~~l~~L~~~~a~~l-------f~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
.+.+++++.++-.++ +...+...+.. .+..+....|++.++|.+-.+.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIA--IADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCC--BSCHHHHHHHHHHTCSCTTHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHhCCCCHHHHH
Confidence 688999998874333 22222222211 1113778889999999876443
No 174
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.37 E-value=6.2e-06 Score=86.63 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=103.8
Q ss_pred CCCCCCCCchhHHHHHHHHh-----CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELFK-----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
-..++|++..++++..++.. .....|.|+|++|+|||++|+.+++ ..... .+.++.+......
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~----~~~~~~~~~~~~~------ 95 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSAN----IKTTAAPMIEKSG------ 95 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCC----EEEEEGGGCCSHH------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC----eEEecchhccchh------
Confidence 45689999999999888872 3356789999999999999999987 32222 2234332221111
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccC------------------CCc
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQL------------------PYY 268 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~------------------~gs 268 (784)
.+...+.. ..+..+|+||++...... +...+.... ++.
T Consensus 96 -------------------~~~~~~~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 96 -------------------DLAAILTN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp -------------------HHHHHHHT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred -------------------HHHHHHHh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 11122211 245678999999766533 222222211 124
Q ss_pred eEEEeccccc-------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 269 KILVTSRSVF-------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 269 ~iivTtR~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
.+|.||.... ...+..+.+++++.++..+++.+.+...+. .-.++..+.|++.+.|.|-.+..+
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 5666665431 122347899999999999999877644321 123677888999999999555433
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1.8e-06 Score=91.44 Aligned_cols=186 Identities=11% Similarity=0.066 Sum_probs=105.6
Q ss_pred CCCCCCCCchhHHHHHHH-HhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceE---------------------
Q 003950 136 PPVTPGLDVPLQELKLEL-FKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIF--------------------- 193 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L-~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~--------------------- 193 (784)
-..++|.+..++.+..++ ..+....+.|+|+.|+||||+|+.++. .+...-...+.
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~--~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE--SIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHH--HHSCTTCCC------------------CCEEC
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHH--HHcCCCCCeEEecceeecccccccceeeeecc
Confidence 356899999999998888 544444499999999999999998876 22111111010
Q ss_pred --EEEeC--CCC-CHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhcc
Q 003950 194 --FVTVS--QTP-NVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQ 264 (784)
Q Consensus 194 --wv~~~--~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~ 264 (784)
++.+. ... ......+.+++.+....+- ... + .+..+.+++-++|+|++...+.. ++..+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~---~--~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQ---D--SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC---------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhccc----ccc---c--cccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 11111 000 0000122222222110000 000 0 00001346779999999876532 44445444
Q ss_pred CCCceEEEecccccc------cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcC-HHHHHHHHHHcCCchhHHHHH
Q 003950 265 LPYYKILVTSRSVFP------QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPD-ENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 265 ~~gs~iivTtR~~~~------~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~-~~~~~~i~~~~~g~PLai~~~ 335 (784)
.++..+|++|.+... .....+.+++++.++..+.+...+...+.. -. ++.+..|++.++|.+-.+..+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ---LETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE---ECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC---CCcHHHHHHHHHHcCCCHHHHHHH
Confidence 567888888876421 122478999999999999998876443321 12 467788999999998655543
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.33 E-value=8e-06 Score=82.80 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=89.7
Q ss_pred CCCCCCCchhHHHHHH-------HH---hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHH
Q 003950 137 PVTPGLDVPLQELKLE-------LF---KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGI 206 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~-------L~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~ 206 (784)
..++|....++++... +. ....+.+.|+|++|+|||++|+.+++. . ....+.+..++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~----~~~~~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--S----NFPFIKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--H----TCSEEEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--h----CCCEEEEeCHHH------
Confidence 4578999887777763 32 234678999999999999999999973 2 221223333221
Q ss_pred HHHHHHHcCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCC----------chHHHhhhhc-------cCCCc
Q 003950 207 VQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSG----------SESLLQKFKF-------QLPYY 268 (784)
Q Consensus 207 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~----------~~~~~~~~~~-------~~~gs 268 (784)
+.+ .........+...++ ....+..+|++||+... ...++..+.. .....
T Consensus 101 -------~~g-----~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 168 (272)
T 1d2n_A 101 -------MIG-----FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKL 168 (272)
T ss_dssp -------CTT-----CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEE
T ss_pred -------hcC-----CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCE
Confidence 000 011112223333332 22467889999998532 1222333221 11223
Q ss_pred eEEEecccc--c----c--cCCCceeccCCCH-HHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 269 KILVTSRSV--F----P--QFGSGYDLKPLND-EAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 269 ~iivTtR~~--~----~--~~~~~~~l~~L~~-~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
.||.||... . . .....+.+++++. ++-.+++.+.. .-..+....|++.+.|.
T Consensus 169 ~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~--------~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG--------NFKDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT--------CSCHHHHHHHHHHHTTS
T ss_pred EEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC--------CCCHHHHHHHHHHhcCC
Confidence 466666654 1 1 1123688899988 56666655421 11356678888888883
No 177
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.30 E-value=5.5e-06 Score=84.66 Aligned_cols=170 Identities=14% Similarity=0.170 Sum_probs=98.2
Q ss_pred CCCCCCCCchhHHHHHHHHh-------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCC
Q 003950 136 PPVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN 202 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~ 202 (784)
...++|.+..+++|.+.+.. ...+.+.|+|++|+|||+||+++++ .. ....+.+..++-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~----~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ET----NATFIRVVGSELVK 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HT----TCEEEEEEGGGGCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--Hh----CCCEEEEehHHHHH
Confidence 35689999999999888752 3456799999999999999999987 32 22233333322110
Q ss_pred HHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCC-----------ch----HH---Hhhhh-
Q 003950 203 VKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSG-----------SE----SL---LQKFK- 262 (784)
Q Consensus 203 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~-----------~~----~~---~~~~~- 262 (784)
. ........+...+. ....++.+|+|||+... .. .+ +..+.
T Consensus 90 --------------~-----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 90 --------------K-----FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp --------------C-----STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred --------------h-----ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 0 00111122222221 11356789999999532 11 11 11221
Q ss_pred -ccCCCceEEEeccccc-------c--cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCC-chhH
Q 003950 263 -FQLPYYKILVTSRSVF-------P--QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKG-CPLA 331 (784)
Q Consensus 263 -~~~~gs~iivTtR~~~-------~--~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~PLa 331 (784)
....+..||.||.... . .....+.++..+.++..+++...+....... ......++..+.| .|-.
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE----DVNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT----TCCHHHHHHHCTTCCHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC----cCCHHHHHHHcCCCCHHH
Confidence 1223566777776541 1 1223688999999999999988764433211 1224667777777 3444
Q ss_pred HHH
Q 003950 332 LTV 334 (784)
Q Consensus 332 i~~ 334 (784)
+..
T Consensus 227 i~~ 229 (285)
T 3h4m_A 227 LKA 229 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.30 E-value=1.5e-05 Score=86.26 Aligned_cols=170 Identities=16% Similarity=0.129 Sum_probs=103.1
Q ss_pred CCCCCCCCCchh---HHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC-CCHHHHHHHH
Q 003950 135 PPPVTPGLDVPL---QELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQKV 210 (784)
Q Consensus 135 ~~~~~vGr~~~~---~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i 210 (784)
.-..++|.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+++ ..... ++.++.. ....+ ++.+
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~--~~~~~------f~~l~a~~~~~~~-ir~~ 94 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR--YANAD------VERISAVTSGVKE-IREA 94 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHH--HTTCE------EEEEETTTCCHHH-HHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHH--HhCCC------eEEEEeccCCHHH-HHHH
Confidence 345689999888 7788888877778899999999999999999997 33222 2333222 12222 2222
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEE-eccccccc-----
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILV-TSRSVFPQ----- 280 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iiv-TtR~~~~~----- 280 (784)
+.. ..... ..+++.+|++|++...... ++..+.. ....+|. ||.+....
T Consensus 95 ~~~-----------------a~~~~--~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 95 IER-----------------ARQNR--NAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHH-----------------HHHHH--HTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHH
T ss_pred HHH-----------------HHHhh--hcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHH
Confidence 211 11111 1467889999999765532 3333322 1233333 44444211
Q ss_pred --CCCceeccCCCHHHHHHHHHHHhccCCCC---CCC-cCHHHHHHHHHHcCCchhHHHH
Q 003950 281 --FGSGYDLKPLNDEAARTLFRYSANLQDGN---SYI-PDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 281 --~~~~~~l~~L~~~~a~~lf~~~a~~~~~~---~~~-~~~~~~~~i~~~~~g~PLai~~ 334 (784)
...++.+++++.++..+++.+.+...... ... -.++..+.|++.++|.+-.+..
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 12278899999999999998776431110 111 2367888999999998865543
No 179
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.26 E-value=1.7e-05 Score=82.95 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=99.3
Q ss_pred CchhHHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhccccccccc---------------------CCceEEEEeCCC
Q 003950 143 DVPLQELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF---------------------KDNIFFVTVSQT 200 (784)
Q Consensus 143 ~~~~~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---------------------~~~~~wv~~~~~ 200 (784)
++..+.+...+..+. .+.+.++|+.|+|||++|+.+.+. +.... +. ..++....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY--LLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK- 83 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH--HTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT-
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH--HhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc-
Confidence 344566666666555 467999999999999999998862 22111 11 22222210
Q ss_pred CCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh--cccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEec
Q 003950 201 PNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL--KPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTS 274 (784)
Q Consensus 201 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~--~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTt 274 (784)
.......+....+.+.+ ....+++-++|+|+++..... ++..+....+++.+|++|
T Consensus 84 ------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 84 ------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp ------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred ------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 00001111112222222 112467889999999765532 455555445567777777
Q ss_pred cccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHHH
Q 003950 275 RSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTVV 335 (784)
Q Consensus 275 R~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 335 (784)
.+.. ......+.+++++.++..+.+.... .-.++.+..+++.++|.|..+..+
T Consensus 146 ~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 146 REPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV--------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred CChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6652 1223378999999999999988765 113566788999999999766543
No 180
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.23 E-value=7.2e-06 Score=88.97 Aligned_cols=171 Identities=17% Similarity=0.216 Sum_probs=102.3
Q ss_pred CCCCchh--HHHHHHHHhCC-cEEEEEEcCCCCcHHHHHHHHhcccccccccC-CceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 140 PGLDVPL--QELKLELFKDG-RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFK-DNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 140 vGr~~~~--~~l~~~L~~~~-~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
+|..... ..+.......+ ...+.|+|++|+||||||+.+++ .+...++ ..+++++. ..+...+...+.
T Consensus 109 ~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~~~~~~ 180 (440)
T 2z4s_A 109 VGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMK 180 (440)
T ss_dssp CCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHH
Confidence 3655443 23333333333 67899999999999999999998 5544443 33445543 233444444432
Q ss_pred CCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch------HHHhhhhc-cCCCceEEEecccccc---------
Q 003950 216 YAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE------SLLQKFKF-QLPYYKILVTSRSVFP--------- 279 (784)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~------~~~~~~~~-~~~gs~iivTtR~~~~--------- 279 (784)
... ...+.. .+..+.-+|++||++.... .+...+.. ...|..||+||.....
T Consensus 181 ~~~---------~~~~~~---~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 181 EGK---------LNEFRE---KYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp TTC---------HHHHHH---HHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred ccc---------HHHHHH---HhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 210 111222 2233677999999964331 13333322 3457789999886421
Q ss_pred ----cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 280 ----QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 280 ----~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
..+.++.+++++.++-.+++.+.+...+... .++....|++.+.|.+-.+.
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i---~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGEL---PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCC---CTTHHHHHHHHCCSCHHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHH
Confidence 1234688999999999999988774332211 24567788899999886544
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.19 E-value=1.5e-05 Score=84.15 Aligned_cols=173 Identities=12% Similarity=0.096 Sum_probs=100.9
Q ss_pred CCCCCCCchhHHHHHHHHh------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 137 PVTPGLDVPLQELKLELFK------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
..++|.+..+++|.+.+.. ...+.|.|+|++|+|||+||+++++ .. ....+.++.++-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~----~~~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QS----GATFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HT----TCEEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--Hc----CCeEEEEehHHhhcc-
Confidence 5689999999999887742 2357899999999999999999987 32 222334554321110
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCC--------c-------hHHHhhhhcc----
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSG--------S-------ESLLQKFKFQ---- 264 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~--------~-------~~~~~~~~~~---- 264 (784)
. .......++.++. .-..++.+|+||++... . ..++..+...
T Consensus 157 -------------~-----~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 157 -------------W-----VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp -------------S-----TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred -------------c-----cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 0 0011112222221 11356789999998321 0 0122222211
Q ss_pred CCCceEEEeccccc-------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCC-chhHHHHHH
Q 003950 265 LPYYKILVTSRSVF-------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKG-CPLALTVVG 336 (784)
Q Consensus 265 ~~gs~iivTtR~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~ 336 (784)
..+..||.||.... ......+.++..+.++..+++...+..... .-..+....|++.+.| .+-.+..+.
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC---CLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC---CccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 12345555665431 122336788888999988888776643321 1125677889999988 455666554
Q ss_pred h
Q 003950 337 G 337 (784)
Q Consensus 337 ~ 337 (784)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.18 E-value=3.8e-05 Score=77.28 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=95.7
Q ss_pred CCCCCCCchhHHHHHHHH---h---------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 137 PVTPGLDVPLQELKLELF---K---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
..++|.+..++++.+++. . ...+.|.|+|++|+|||++|+.+++ .. ....+.++.+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~----~~~~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EA----QVPFLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HH----TCCEEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--Hh----CCCEEEechHHHHhh-
Confidence 468999998888876654 1 2345688999999999999999987 33 222334554332110
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCCc----------------h---HHHhhhhcc
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSGS----------------E---SLLQKFKFQ 264 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~----------------~---~~~~~~~~~ 264 (784)
........+...++ .....+.+|++|++.... . .++..+...
T Consensus 79 ------------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 79 ------------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp ------------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred ------------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 00111122233331 113457899999997531 1 122222221
Q ss_pred --CCCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchh-HH
Q 003950 265 --LPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-AL 332 (784)
Q Consensus 265 --~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai 332 (784)
..+..||.||.... . .....+.++..+.++-.+++...+...... .........+++.+.|.+- .+
T Consensus 141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~l 218 (262)
T 2qz4_A 141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSGADI 218 (262)
T ss_dssp CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCHHHH
T ss_pred CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCHHHH
Confidence 22455666665431 1 223467889999999999998776443321 1112234778888888653 44
Q ss_pred H
Q 003950 333 T 333 (784)
Q Consensus 333 ~ 333 (784)
.
T Consensus 219 ~ 219 (262)
T 2qz4_A 219 A 219 (262)
T ss_dssp H
T ss_pred H
Confidence 4
No 183
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=1.8e-05 Score=83.04 Aligned_cols=174 Identities=11% Similarity=0.129 Sum_probs=104.2
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
..++|.+..++.+...+..++.+.+.++|++|+||||+|+.++. .+.. .+...+.-++.+.......+ +.++..+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~~~~~~~~~~~~~i-r~~i~~~~ 101 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR--EIYGKNYSNMVLELNASDDRGIDVV-RNQIKDFA 101 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH--HHHTTSHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH--HHcCCCccceEEEEcCcccccHHHH-HHHHHHHH
Confidence 45789888888888888876655599999999999999999987 3221 12221222333222222211 11111110
Q ss_pred CCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEeccccc------ccCCCce
Q 003950 216 YAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSVF------PQFGSGY 285 (784)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~~------~~~~~~~ 285 (784)
+......+.+-++|+|++...... +...+......+++|++|.... ......+
T Consensus 102 -----------------~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 102 -----------------STRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp -----------------HBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred -----------------hhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 000112345788999998655422 3333444445677777775441 1122367
Q ss_pred eccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 286 DLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 286 ~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
.+.+++.++..+.+.+.+...+. .-.++..+.|++.++|.+--+.
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~---~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKL---KLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC---CBCHHHHHHHHHHHTTCHHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 89999999988888776633221 1135678889999999886543
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.16 E-value=3.7e-05 Score=79.75 Aligned_cols=173 Identities=15% Similarity=0.183 Sum_probs=98.3
Q ss_pred CCCCCCCchhHHHHHHHHh------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 137 PVTPGLDVPLQELKLELFK------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
..++|.+..++.|.+.+.. ...+.|.++|++|+|||+||+++++ ... ....+.++.++-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~---~~~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EAN---NSTFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH--HTT---SCEEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH--HcC---CCcEEEEEhHHHHh--
Confidence 4679999999888877641 1246799999999999999999997 321 12122333332110
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCCc--------h---H----HHhhhhc---cC
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSGS--------E---S----LLQKFKF---QL 265 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~--------~---~----~~~~~~~---~~ 265 (784)
... ...+. .++.+++ .-..++.+|+||++.... . . ++..+.. ..
T Consensus 85 ------------~~~--g~~~~---~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 85 ------------KWL--GESEK---LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp ------------SSC--CSCHH---HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred ------------hhh--hHHHH---HHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 000 01111 1222221 113568899999996431 0 1 2222222 12
Q ss_pred CCceEEEeccccc-------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc-hhHHHHHH
Q 003950 266 PYYKILVTSRSVF-------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC-PLALTVVG 336 (784)
Q Consensus 266 ~gs~iivTtR~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~ 336 (784)
.+..||.||.... ......+.++..+.++-.+++..++..... .-.......|++.+.|. +-.|..+.
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN---SLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB---CCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445555664431 123346788888888888888877633221 11356678888888886 44455443
No 185
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.16 E-value=2.1e-06 Score=81.46 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=39.8
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++||+.+++.+.+.+.....+.+.|+|++|+|||++|+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999876677889999999999999999987
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.13 E-value=5.1e-05 Score=77.92 Aligned_cols=172 Identities=15% Similarity=0.173 Sum_probs=98.2
Q ss_pred CCCCCCCchhHHHHHHHHh------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 137 PVTPGLDVPLQELKLELFK------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
..++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++ .. ....+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~--~~----~~~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT--EC----SATFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH--HT----TCEEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--Hh----CCCeEEeeHHHHhh--
Confidence 5689999999999887742 2357899999999999999999987 32 22233444332211
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc-----------hH----HHhhhhcc-----
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS-----------ES----LLQKFKFQ----- 264 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-----------~~----~~~~~~~~----- 264 (784)
.. ..........+.... ...++.+|++|++.... .. ++..+...
T Consensus 93 ------------~~--~~~~~~~~~~~~~~~--~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------KY--VGDGEKLVRALFAVA--RHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------SS--CSCHHHHHHHHHHHH--HHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------cc--cchHHHHHHHHHHHH--HHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 001111111111111 13567899999985431 11 22222211
Q ss_pred CCCceEEEeccccc-------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchh-HHHHH
Q 003950 265 LPYYKILVTSRSVF-------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVV 335 (784)
Q Consensus 265 ~~gs~iivTtR~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 335 (784)
..+..||.||.... ......+.++..+.++...++...+..... .-..+....+++.+.|.+- ++..+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 12345666666531 122346777778888888888776543321 1135667889999998775 55444
No 187
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.12 E-value=3.9e-05 Score=81.55 Aligned_cols=192 Identities=8% Similarity=0.016 Sum_probs=102.1
Q ss_pred CCCCCCCCchhHHH---HHHHHhCC--cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeC----CCCCHHHH
Q 003950 136 PPVTPGLDVPLQEL---KLELFKDG--RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS----QTPNVKGI 206 (784)
Q Consensus 136 ~~~~vGr~~~~~~l---~~~L~~~~--~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~----~~~~~~~~ 206 (784)
...++|++..++.+ .+.+.... .+.+.|+|++|+|||++|+.+++ ......+ .+.+... ......+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~--~l~~~~~--~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ--ALGPDTP--FTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH--HHCSSCC--EEEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH--HhcccCC--cccccchhhhhcccchhHH
Confidence 35789999887764 44444433 35899999999999999999998 3332221 1122221 12233444
Q ss_pred HHHHHHHc-CCC--------------------CC-------C--CCChHHHHHHHHHHhcc--cCCC----cEEEEEeCC
Q 003950 207 VQKVYQHK-GYA--------------------VP-------E--FQTDEDAINDLERLLKP--IRPE----AILLVLDDV 250 (784)
Q Consensus 207 ~~~i~~~l-~~~--------------------~~-------~--~~~~~~~~~~l~~~~~~--l~~k----r~LlVlDdv 250 (784)
+.+.+... +.. .. . ..........+...... ..++ +.+|++|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 44443321 100 00 0 00011222222222211 0233 469999999
Q ss_pred CCCchHHHhhhh---ccCCCceEEEeccc-----------ccc-------cCCCceeccCCCHHHHHHHHHHHhccCCCC
Q 003950 251 WSGSESLLQKFK---FQLPYYKILVTSRS-----------VFP-------QFGSGYDLKPLNDEAARTLFRYSANLQDGN 309 (784)
Q Consensus 251 ~~~~~~~~~~~~---~~~~gs~iivTtR~-----------~~~-------~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~ 309 (784)
..........+. ...+...++++|.. ... .....+.+++++.++..+++...+...+.
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~- 277 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV- 277 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC-
T ss_pred cccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 776543222221 22222234444431 100 01125789999999999999877654332
Q ss_pred CCCcCHHHHHHHHHHcC-CchhHHHH
Q 003950 310 SYIPDENLVNKILRACK-GCPLALTV 334 (784)
Q Consensus 310 ~~~~~~~~~~~i~~~~~-g~PLai~~ 334 (784)
.-.++..+.|++.+. |.|-.+..
T Consensus 278 --~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 278 --EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp --CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred --CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 223677888999997 77765543
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.09 E-value=3.4e-05 Score=80.22 Aligned_cols=172 Identities=16% Similarity=0.165 Sum_probs=100.4
Q ss_pred CCCCCCCchhHHHHHHHH------------hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 137 PVTPGLDVPLQELKLELF------------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
..++|.+..++.|.+.+. ....+-|.++|++|+|||+||+++++ ... ...+.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~----~~~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EAN----STFFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHT----CEEEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHC----CCEEEEchH------
Confidence 568999999999988873 11246799999999999999999987 332 222333321
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCCc---------------hHHHhhhhc---cC
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSGS---------------ESLLQKFKF---QL 265 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~---------------~~~~~~~~~---~~ 265 (784)
++ .... .......++.+++ .-..++.+|+||++.... ..++..+.. ..
T Consensus 86 ~l----~~~~---------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 86 DL----VSKW---------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp HH----HTTT---------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred HH----hhcc---------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 11 1100 0111222233331 113567899999996321 112222222 23
Q ss_pred CCceEEEeccccc-------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc-hhHHHHHH
Q 003950 266 PYYKILVTSRSVF-------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC-PLALTVVG 336 (784)
Q Consensus 266 ~gs~iivTtR~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~ 336 (784)
.+..||.||.... ......+.++..+.++-.+++...+..... .........|++.+.|. +-.|..+.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3455666666531 123346788889999999999887744321 11255677888888874 44444443
No 189
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=4.2e-06 Score=77.16 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=18.4
Q ss_pred CCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCC
Q 003950 645 VSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCT 680 (784)
Q Consensus 645 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 680 (784)
.+|+.||+++|.++..--..+..+++|++|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 356666666655333322334455555555555554
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.02 E-value=3e-05 Score=81.61 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=97.7
Q ss_pred CCCCCCCchhHHHHHHHHh------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 137 PVTPGLDVPLQELKLELFK------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
..++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+++++ ... ...+.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~----~~~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EAN----STFFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHT----CEEEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhC----CCEEEeeHH------
Confidence 4689999999999887731 1235689999999999999999998 332 222333322
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCCc---------------hHHHhhhhc---cC
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSGS---------------ESLLQKFKF---QL 265 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~---------------~~~~~~~~~---~~ 265 (784)
++ .....+ ... ..++.++. ....++.+|+||++.... ..++..+.. ..
T Consensus 119 ~l----~~~~~g------~~~---~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 119 DL----VSKWMG------ESE---KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp HH----HSCC---------CH---HHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred HH----hhhhcc------hHH---HHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 11 111100 011 12222221 113578999999986432 112222221 12
Q ss_pred CCceEEEeccccc-------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc-hhHHHHH
Q 003950 266 PYYKILVTSRSVF-------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC-PLALTVV 335 (784)
Q Consensus 266 ~gs~iivTtR~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 335 (784)
.+..||.||.... ......+.++..+.++-.+++..++..... .-.......|++.+.|. +-.|..+
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS---VLTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB---CCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 3455665665431 123346788888999999999877643321 11245678888888884 4444443
No 191
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.01 E-value=7.4e-05 Score=79.89 Aligned_cols=173 Identities=17% Similarity=0.169 Sum_probs=98.6
Q ss_pred CCCCCCCCchhHHHHHHHH------------hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 136 PPVTPGLDVPLQELKLELF------------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
-..++|.+..++.+.+++. ....+-|.|+|.+|+|||+||+++++ +. ....+.++.+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~----~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ES----NATFFNISAASLTSK 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HT----TCEEEEECSCCC---
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hh----cCcEEEeeHHHhhcc
Confidence 3568999999999988874 12246899999999999999999987 22 222334433322110
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcc-cCCCcEEEEEeCCCCC-----------chH----HHhhhhcc---
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP-IRPEAILLVLDDVWSG-----------SES----LLQKFKFQ--- 264 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~-l~~kr~LlVlDdv~~~-----------~~~----~~~~~~~~--- 264 (784)
. .+ .... .+..+++. -..++.+|+||++... ... ++..+...
T Consensus 188 --~-------~g-------~~~~---~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 188 --Y-------VG-------EGEK---LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp --------------------CHH---HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred --c-------cc-------hHHH---HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 0 00 0111 11222211 1345679999999533 111 22222211
Q ss_pred -CCCceEEEeccccc-------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchh-HHHHH
Q 003950 265 -LPYYKILVTSRSVF-------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL-ALTVV 335 (784)
Q Consensus 265 -~~gs~iivTtR~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 335 (784)
.....||.||.... ......+.++..+.++..+++...+..... .-..+....|++.+.|..- ++..+
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 12345555665431 122336788889999999999877644322 1235677889999988543 55544
Q ss_pred H
Q 003950 336 G 336 (784)
Q Consensus 336 ~ 336 (784)
.
T Consensus 326 ~ 326 (389)
T 3vfd_A 326 A 326 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 192
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=3.8e-06 Score=79.59 Aligned_cols=113 Identities=11% Similarity=0.074 Sum_probs=66.9
Q ss_pred cCCCCCCcEEEccCC-CCCC----CCchhccCCCCCCEEEeecCCCCCC----CcccccCCCCCCEEeccCCCCCCc---
Q 003950 641 LCDIVSIKKLRITNC-HKLS----ALPEGIGKLVNLQMLTLASCTDLSA----LPDTIGNLSNLNFLDISECLNIQE--- 708 (784)
Q Consensus 641 i~~l~~L~~L~L~~~-~~~~----~lp~~l~~l~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~--- 708 (784)
+...++|+.|+|++| .+.. .+...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344556666666665 3321 1333445566677777766654321 233444556677777777754432
Q ss_pred -cchhhhCCCCCCEEec--cCCCCCC-----cChhhhCCCCCCEEeCCCCchh
Q 003950 709 -LPERIGELCSLKTLCL--KGCSMFE-----LPSSILNLENLEVVKCDEETAY 753 (784)
Q Consensus 709 -~p~~l~~l~~L~~L~l--~~n~l~~-----lp~~l~~l~~L~~L~l~~~~~~ 753 (784)
+...+...++|++|++ ++|.++. +...+...++|+.|+++.|...
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566677778877 6677762 4455666677888888777654
No 193
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.99 E-value=0.00011 Score=76.33 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=94.2
Q ss_pred CCCCch--hHHHHHHHHhC--CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 140 PGLDVP--LQELKLELFKD--GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 140 vGr~~~--~~~l~~~L~~~--~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
+|.... ...+..++... ....+.|+|++|+||||||+.+++ ..... ...+++++. .++...+...+.
T Consensus 15 ~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~--~~~~~-~~~~~~i~~------~~~~~~~~~~~~ 85 (324)
T 1l8q_A 15 VGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKR-GYRVIYSSA------DDFAQAMVEHLK 85 (324)
T ss_dssp CCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHT-TCCEEEEEH------HHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH--HHHHC-CCEEEEEEH------HHHHHHHHHHHH
Confidence 364433 33444444433 346799999999999999999997 33222 233456654 233333333321
Q ss_pred CCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCch--H----HHhhhhc-cCCCceEEEecccccc---------
Q 003950 216 YAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSE--S----LLQKFKF-QLPYYKILVTSRSVFP--------- 279 (784)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~--~----~~~~~~~-~~~gs~iivTtR~~~~--------- 279 (784)
.. . ...+.... .+..+|++||+..... + +...+.. ...|..||+||.....
T Consensus 86 ~~-----~----~~~~~~~~----~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L 152 (324)
T 1l8q_A 86 KG-----T----INEFRNMY----KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRL 152 (324)
T ss_dssp HT-----C----HHHHHHHH----HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHH
T ss_pred cC-----c----HHHHHHHh----cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHh
Confidence 10 0 11111111 2367999999965431 1 2222221 2346678888865422
Q ss_pred ----cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhH
Q 003950 280 ----QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLA 331 (784)
Q Consensus 280 ----~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLa 331 (784)
..+.++.+++ +.++..+++...+...+. .-.++....|++.+ |.+-.
T Consensus 153 ~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~---~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 153 VSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL---ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHC-SSHHH
T ss_pred hhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhC-CCHHH
Confidence 1123688999 999999999887754332 11366778888888 77643
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=4.9e-06 Score=76.76 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=18.7
Q ss_pred ceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCC
Q 003950 622 NLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCH 656 (784)
Q Consensus 622 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 656 (784)
+|+.|++++|.++..--..+.++++|+.|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 45666666655443333344555566666666554
No 195
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.96 E-value=2.9e-05 Score=70.10 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=65.6
Q ss_pred CCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 138 VTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
.++|+...+.++.+.+. .....-|.|+|.+|+|||++|+.+++... +...+ .+ ++++...+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~--~v-~~~~~~~~~~----------- 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGE--FV-YRELTPDNAP----------- 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSC--CE-EEECCTTTSS-----------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCC--EE-EECCCCCcch-----------
Confidence 57999999999998886 23445678999999999999999987321 11222 33 6655432220
Q ss_pred CCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEecccc
Q 003950 216 YAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~ 277 (784)
.. ...+.. .+...|++|++...... ++..+.......++|.||...
T Consensus 67 -------~~---~~~~~~------a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 67 -------QL---NDFIAL------AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp -------CH---HHHHHH------HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred -------hh---hcHHHH------cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 00 011111 12246899999776633 344443334457888888753
No 196
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.94 E-value=5.7e-05 Score=78.05 Aligned_cols=148 Identities=14% Similarity=0.095 Sum_probs=84.7
Q ss_pred CCCCCCchhHHHHHHHH---------------hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCC
Q 003950 138 VTPGLDVPLQELKLELF---------------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN 202 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~---------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~ 202 (784)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++.......... .-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~-~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRK-GHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSS-CCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCC-CcEEEEcHH--
Confidence 46999998888877664 223457999999999999999988873211111111 113333211
Q ss_pred HHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCC---------ch----HHHhhhhccCCCce
Q 003950 203 VKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSG---------SE----SLLQKFKFQLPYYK 269 (784)
Q Consensus 203 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~---------~~----~~~~~~~~~~~gs~ 269 (784)
.+..... ......+...++.. +..+|++|++... .. .++..+.....+..
T Consensus 109 ----------~l~~~~~-----g~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 109 ----------DLVGQYI-----GHTAPKTKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp ----------GTCCSST-----TCHHHHHHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred ----------Hhhhhcc-----cccHHHHHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 1110000 00111223333211 3459999999733 22 24444444455677
Q ss_pred EEEeccccc------------ccCCCceeccCCCHHHHHHHHHHHhcc
Q 003950 270 ILVTSRSVF------------PQFGSGYDLKPLNDEAARTLFRYSANL 305 (784)
Q Consensus 270 iivTtR~~~------------~~~~~~~~l~~L~~~~a~~lf~~~a~~ 305 (784)
||.||.... ......+.+++++.++-.+++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 888875321 112247889999999999998877643
No 197
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.94 E-value=8.3e-05 Score=76.36 Aligned_cols=165 Identities=12% Similarity=0.165 Sum_probs=93.1
Q ss_pred CCCCCCCchhHHHHHHHHh-------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
..++|.+..++++.+++.. ...+.|.|+|++|+|||+||+++++ ... .. ++.+ +.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~----~~--~i~v----~~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQ----AN--FISI----KG 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTT----CE--EEEE----CH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhC----CC--EEEE----Eh
Confidence 4589999998888887752 3356799999999999999999997 332 22 2333 22
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc-ccCCCcEEEEEeCCCCCc------------------hHHHhhhhcc
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLLK-PIRPEAILLVLDDVWSGS------------------ESLLQKFKFQ 264 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~l~~kr~LlVlDdv~~~~------------------~~~~~~~~~~ 264 (784)
.++..... +.. .. .+..+++ .....+.+|++|++.... ..++..+...
T Consensus 83 ~~l~~~~~---g~~------~~----~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 83 PELLTMWF---GES------EA----NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp HHHHHHHH---TTC------TT----HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred HHHHhhhc---Cch------HH----HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 33333221 111 11 1222221 113567999999985311 1133333221
Q ss_pred --CCCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchh
Q 003950 265 --LPYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPL 330 (784)
Q Consensus 265 --~~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL 330 (784)
..+..||.||.... . .....+.++..+.++-.+++.............. ...++..+.|.|-
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCH
Confidence 23456777776441 1 1223688899999988888877664322111111 2345556666553
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.93 E-value=8.8e-05 Score=80.56 Aligned_cols=173 Identities=17% Similarity=0.241 Sum_probs=96.3
Q ss_pred CCCCCCCchhHHHHHHHH------------hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 137 PVTPGLDVPLQELKLELF------------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
..++|.+..++.|.+.+. ....+.|.|+|++|+|||+||+++++ ... .. -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~--~~~---~~--~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EAN---NS--TFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH--HCC---SS--EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH--HcC---CC--CEEEEeHHH---
Confidence 568999999999988773 12347899999999999999999997 321 11 133333221
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc-----------hHHHhhh----hc---cCC
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS-----------ESLLQKF----KF---QLP 266 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-----------~~~~~~~----~~---~~~ 266 (784)
+.... .+ ... .....+..... ..++.+|+||++.... ..+...+ .. ...
T Consensus 204 -l~~~~---~g-~~~------~~~~~~f~~a~--~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 -LVSKW---LG-ESE------KLVKNLFQLAR--ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp -------------CC------CTHHHHHHHHH--HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred -HHhhh---cc-hHH------HHHHHHHHHHH--HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 11110 01 000 00111111111 3567899999997541 1122222 21 123
Q ss_pred CceEEEeccccc-------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc-hhHHHHH
Q 003950 267 YYKILVTSRSVF-------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC-PLALTVV 335 (784)
Q Consensus 267 gs~iivTtR~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 335 (784)
+..||.||.... ......+.++..+.++..++|..++..... .........|++.+.|. +-.|..+
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN---SLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE---ECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 455666665431 223336778888888888888877643221 11245667888888884 4444433
No 199
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00011 Score=76.89 Aligned_cols=163 Identities=15% Similarity=0.214 Sum_probs=94.7
Q ss_pred CCCCCCCchhHHHHHHHH-------------hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELF-------------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~-------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
.++.|.++.+++|.+.+. -...+-|.++|++|.|||.||+++++ .. ....+.+..++-.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~----~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HT----DCKFIRVSGAELVQK 221 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HH----TCEEEEEEGGGGSCS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hh----CCCceEEEhHHhhcc
Confidence 456789988888877654 11257799999999999999999998 32 222334444322110
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc----------h-H-------HHhhhhcc
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS----------E-S-------LLQKFKFQ 264 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~----------~-~-------~~~~~~~~ 264 (784)
...+....++.++ ..-...+++|++|+++... + . ++..+...
T Consensus 222 -------------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 222 -------------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp -------------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred -------------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 0112223333333 1124678999999985421 0 0 22222222
Q ss_pred --CCCceEEEeccccc---------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 265 --LPYYKILVTSRSVF---------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 265 --~~gs~iivTtR~~~---------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
..+..||.||.... ......+.++.-+.++-.++|..+..........+ ...|++.+.|.
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCC
Confidence 22445666665541 13445788888898888899987664332211111 45677777775
No 200
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.89 E-value=4.9e-05 Score=71.53 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=55.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 237 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 237 (784)
...+.|+|++|+||||||+.+++ .........+++++ ..++...+......... . ..+.. +
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~--~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~-----~---~~~~~-~-- 98 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK--AIYEKKGIRGYFFD------TKDLIFRLKHLMDEGKD-----T---KFLKT-V-- 98 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH--HHHHHSCCCCCEEE------HHHHHHHHHHHHHHTCC-----S---HHHHH-H--
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HHHHHcCCeEEEEE------HHHHHHHHHHHhcCchH-----H---HHHHH-h--
Confidence 57899999999999999999998 33211122233544 34445444443321111 0 11111 1
Q ss_pred cCCCcEEEEEeCCCC--CchH----HHhhhhcc-CCCceEEEecccc
Q 003950 238 IRPEAILLVLDDVWS--GSES----LLQKFKFQ-LPYYKILVTSRSV 277 (784)
Q Consensus 238 l~~kr~LlVlDdv~~--~~~~----~~~~~~~~-~~gs~iivTtR~~ 277 (784)
.+.-+|||||++. .+.+ +...+... ..|..+|+||...
T Consensus 99 --~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 99 --LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp --HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred --cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 2456899999973 3333 22222222 2577899998764
No 201
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.87 E-value=2.9e-06 Score=80.43 Aligned_cols=112 Identities=16% Similarity=0.094 Sum_probs=81.1
Q ss_pred cCCceEEEEEeCC-CCCCC----CCcccCCCCCCcEEEccCCCCCCC----CchhccCCCCCCEEEeecCCCCCC----C
Q 003950 619 AFPNLLEIDIDYC-NDLIE----LPDGLCDIVSIKKLRITNCHKLSA----LPEGIGKLVNLQMLTLASCTDLSA----L 685 (784)
Q Consensus 619 ~l~~L~~L~L~~~-~~~~~----lp~~i~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~----~ 685 (784)
..++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+... +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 5677888888887 55432 344566678899999999875432 344566678899999999876543 4
Q ss_pred cccccCCCCCCEEec--cCCCCCCc----cchhhhCCCCCCEEeccCCCCC
Q 003950 686 PDTIGNLSNLNFLDI--SECLNIQE----LPERIGELCSLKTLCLKGCSMF 730 (784)
Q Consensus 686 p~~~~~l~~L~~L~l--~~n~~~~~----~p~~l~~l~~L~~L~l~~n~l~ 730 (784)
...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 566777889999999 77765543 4445666789999999999875
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=0.00011 Score=75.20 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=89.3
Q ss_pred CCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccc-cccccCCceEEEEeCC-CCCHHHHHHHHHHHcCCCC
Q 003950 141 GLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQ-VLGKFKDNIFFVTVSQ-TPNVKGIVQKVYQHKGYAV 218 (784)
Q Consensus 141 Gr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 218 (784)
|-++.++.+...+..+..+.+.++|++|+||||+|+.+.+... .....+. +.+++.+. ....++ .+.+.+.+...
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~~- 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNYS- 77 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTSC-
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhhc-
Confidence 4456677888888866678999999999999999999986311 1112233 44554432 222222 23344433221
Q ss_pred CCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccCCCceEEEecccc-----cccCCCceeccC
Q 003950 219 PEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQLPYYKILVTSRSV-----FPQFGSGYDLKP 289 (784)
Q Consensus 219 ~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~gs~iivTtR~~-----~~~~~~~~~l~~ 289 (784)
...+++-++|+|++...... ++..+....+.+.+|++|.+. ..... .+++++
T Consensus 78 ------------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 78 ------------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 11456789999999765532 555555555678888877554 12223 899999
Q ss_pred CCHHHHHHHHHHHh
Q 003950 290 LNDEAARTLFRYSA 303 (784)
Q Consensus 290 L~~~~a~~lf~~~a 303 (784)
+++++..+.+.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999888765
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.83 E-value=7.9e-05 Score=88.15 Aligned_cols=147 Identities=12% Similarity=0.168 Sum_probs=81.7
Q ss_pred CCCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-----c-CCceEEEEeCCCCCHHHHHHH
Q 003950 136 PPVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGK-----F-KDNIFFVTVSQTPNVKGIVQK 209 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-----f-~~~~~wv~~~~~~~~~~~~~~ 209 (784)
-..++||+.++.++.+.|.....+.+.++|.+|+||||+|+.+++ .+... . ...++.++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ--RIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH--HHHHTCSCTTSTTCEEEEECC------------
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHH--HHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 356899999999999999866666789999999999999999987 33221 1 23344444322110
Q ss_pred HHHHcCCCCCCCCChHHHHHHHHHHhccc--CCCcEEEEEeCCCCCc--------hH---HHhhhhccCCCceEEEecc-
Q 003950 210 VYQHKGYAVPEFQTDEDAINDLERLLKPI--RPEAILLVLDDVWSGS--------ES---LLQKFKFQLPYYKILVTSR- 275 (784)
Q Consensus 210 i~~~l~~~~~~~~~~~~~~~~l~~~~~~l--~~kr~LlVlDdv~~~~--------~~---~~~~~~~~~~gs~iivTtR- 275 (784)
+.. ...+....+..++..+ .+++.+|++|++.... .. .+..+... .+..+|.+|.
T Consensus 240 -----g~~-----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~~i~~I~at~~ 308 (854)
T 1qvr_A 240 -----GAK-----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-GELRLIGATTL 308 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-TCCCEEEEECH
T ss_pred -----cCc-----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 000 0011122333333222 2468999999996542 11 12222222 2344555443
Q ss_pred ccc---------ccCCCceeccCCCHHHHHHHHHHH
Q 003950 276 SVF---------PQFGSGYDLKPLNDEAARTLFRYS 302 (784)
Q Consensus 276 ~~~---------~~~~~~~~l~~L~~~~a~~lf~~~ 302 (784)
... ...-..+.+++++.++..+++...
T Consensus 309 ~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 309 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 321 111125889999999999988644
No 204
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00031 Score=74.83 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=92.8
Q ss_pred CCCCCCCchhHHHHHHHHh-------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
..+.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+++++ .. ....+.+..++-.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~----~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TI----GANFIFSPASGIVDK 254 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HH----TCEEEEEEGGGTCCS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--Hh----CCCEEEEehhhhccc
Confidence 4467888888888776641 1257899999999999999999998 32 232334544332110
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc-----------h-------HHHhhhhcc
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS-----------E-------SLLQKFKFQ 264 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~-----------~-------~~~~~~~~~ 264 (784)
...+....++.++ ..-...+++|++|+++... . .++..+...
T Consensus 255 -------------------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 255 -------------------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp -------------------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred -------------------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 0111122233333 1124678999999985321 0 022333222
Q ss_pred --CCCceEEEeccccc------cc---CCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 265 --LPYYKILVTSRSVF------PQ---FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 265 --~~gs~iivTtR~~~------~~---~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
..+..||.||.... .. ....+.++..+.++-.++|..+..........+ ...|++.+.|.
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~ 386 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGF 386 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCC
Confidence 23456777776541 11 122577888888888888877664332211122 35666777764
No 205
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00028 Score=74.96 Aligned_cols=163 Identities=14% Similarity=0.138 Sum_probs=93.5
Q ss_pred CCCCCCCchhHHHHHHHH-------------hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELF-------------KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~-------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
..+.|.++.+++|.+.+. -...+-|.++|++|+|||.||+++++ +.. ...+.+..++-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~----~~fi~vs~s~L~s- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTD----ATFIRVIGSELVQ- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHT----CEEEEEEGGGGCC-
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccC----CCeEEEEhHHhhc-
Confidence 457899988888877643 12367899999999999999999998 332 2233444332110
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc--------h---H-------HHhhhhcc
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS--------E---S-------LLQKFKFQ 264 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~--------~---~-------~~~~~~~~ 264 (784)
. ...+....++.++ ..-...+++|++|++.... . . ++..+...
T Consensus 282 -------------k-----~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 282 -------------K-----YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp -------------C-----SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred -------------c-----cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 0 0111122233333 1124678999999985321 0 0 22222222
Q ss_pred C--CCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 265 L--PYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 265 ~--~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
. .+..||.||.... . .....+.++..+.++-.++|..+........... ...|++.+.|.
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNS 414 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCC
Confidence 2 2345566665431 1 2344788888888888889987764332211111 35677777775
No 206
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.73 E-value=3.6e-05 Score=73.97 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=63.5
Q ss_pred CCCCCCCch----hHHHHHHHHhCC----cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHH
Q 003950 137 PVTPGLDVP----LQELKLELFKDG----RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQ 208 (784)
Q Consensus 137 ~~~vGr~~~----~~~l~~~L~~~~----~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~ 208 (784)
..|++.+.. ++.+.+++.... .+.+.|+|++|+|||+||+.+++ ....... .++++++ .++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~-~~~~~~~------~~~~~ 95 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNV-SSLIVYV------PELFR 95 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTC-CEEEEEH------HHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCC-eEEEEEh------HHHHH
Confidence 345665533 344445554321 27899999999999999999998 3333322 3556664 34444
Q ss_pred HHHHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc--hH----HHhh-hhcc-CCCceEEEecccc
Q 003950 209 KVYQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS--ES----LLQK-FKFQ-LPYYKILVTSRSV 277 (784)
Q Consensus 209 ~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~--~~----~~~~-~~~~-~~gs~iivTtR~~ 277 (784)
.+....... ....... .+ .. .-+|||||++... .+ ++.. +... ..+.++|+||...
T Consensus 96 ~~~~~~~~~-----~~~~~~~----~~---~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 96 ELKHSLQDQ-----TMNEKLD----YI---KK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHC---C-----CCHHHHH----HH---HH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhccc-----hHHHHHH----Hh---cC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 444433211 1111111 11 11 2389999996532 11 2221 2211 3467899998754
No 207
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00038 Score=74.05 Aligned_cols=44 Identities=32% Similarity=0.430 Sum_probs=36.1
Q ss_pred CCCCCCCchhHHHHHHHHh-------------CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+++++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4578999988888776641 1256799999999999999999998
No 208
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.72 E-value=7e-05 Score=67.35 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=34.1
Q ss_pred CCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.++|++..++++.+.+. .....-|.|+|.+|+|||++|+.+++
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 357999999999988876 23445588999999999999999987
No 209
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.72 E-value=0.00019 Score=78.40 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=39.2
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.++||+.+++.+...|......-+.|+|++|+|||++|+.++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999865566778999999999999999987
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=3.3e-05 Score=76.88 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=6.2
Q ss_pred CCCEEeccCCCCC
Q 003950 718 SLKTLCLKGCSMF 730 (784)
Q Consensus 718 ~L~~L~l~~n~l~ 730 (784)
+|++|++++|++.
T Consensus 221 ~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 221 KLEELWLDGNSLC 233 (267)
T ss_dssp CCSEEECTTSTTG
T ss_pred CcceEEccCCcCc
Confidence 4444444444443
No 211
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.0005 Score=72.26 Aligned_cols=163 Identities=12% Similarity=0.121 Sum_probs=90.3
Q ss_pred CCCCCCCchhHHHHHHHH----h---------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELF----K---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
..+.|.++.+++|.+.+. . ...+-|.++|++|.|||.||+++++ +.. ...+.++.++-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~----~~fi~v~~s~l~s- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTS----ATFLRIVGSELIQ- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHT----CEEEEEESGGGCC-
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhC----CCEEEEEHHHhhh-
Confidence 446789988888877664 1 1257899999999999999999998 332 2233444332110
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc------------h------HHHhhhhcc
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS------------E------SLLQKFKFQ 264 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~------------~------~~~~~~~~~ 264 (784)
. ...+....++.++ ..-...+++|++|+++... . .++..+...
T Consensus 255 -------------k-----~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 255 -------------K-----YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp -------------S-----SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred -------------c-----cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 0 0111122233333 1114568999999885321 0 022222222
Q ss_pred C--CCceEEEeccccc------ccCC---CceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 265 L--PYYKILVTSRSVF------PQFG---SGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 265 ~--~gs~iivTtR~~~------~~~~---~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
. .+..||.||.... ...+ ..+.++.-+.++-.++|..+..........+ ...|++.+.|.
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 2 2445666665541 1111 2577888888888888877664332211111 35666777664
No 212
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.68 E-value=0.0003 Score=75.41 Aligned_cols=125 Identities=12% Similarity=0.025 Sum_probs=78.4
Q ss_pred cCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEE
Q 003950 619 AFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFL 698 (784)
Q Consensus 619 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 698 (784)
.+.+|+.+.+..+ ........+..+..|+.+.+.... + ....+..+.+|+.+.+.. +....-...+.++++|+.+
T Consensus 251 ~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~-i--~~~~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 251 GCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI-V--PEKTFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE-E--CTTTTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEE
T ss_pred ccccceeEEcCCC-cceeeccccccccccceeccCcee-e--cccccccccccccccccc-ccceechhhhcCCCCCCEE
Confidence 4566666666554 222233445666677776665422 1 123456778888888865 3332334567788888888
Q ss_pred eccCCCCCCccchhhhCCCCCCEEeccCCCCCCcC-hhhhCCCCCCEEeCCCC
Q 003950 699 DISECLNIQELPERIGELCSLKTLCLKGCSMFELP-SSILNLENLEVVKCDEE 750 (784)
Q Consensus 699 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~~ 750 (784)
++..+ ....-...|.++++|+.+.+..+ ++.++ ..+.+|++|+.+.++.+
T Consensus 326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88653 33233456778888888888765 66665 45778888888888654
No 213
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.68 E-value=4.3e-05 Score=76.09 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=54.9
Q ss_pred CCCCCCcEEEccCCCCCC--CCchhccCCCCCCEEEeecCCCCCCCcccccCCC--CCCEEeccCCCCCCccch------
Q 003950 642 CDIVSIKKLRITNCHKLS--ALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLS--NLNFLDISECLNIQELPE------ 711 (784)
Q Consensus 642 ~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~--~L~~L~l~~n~~~~~~p~------ 711 (784)
.++++|+.|+|++|.+.+ .+|..+..+++|++|+|++|.+.+. ..+..+. +|+.|+|++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457788888888887655 4556667888888888888776543 2233333 888888888877665542
Q ss_pred -hhhCCCCCCEEe
Q 003950 712 -RIGELCSLKTLC 723 (784)
Q Consensus 712 -~l~~l~~L~~L~ 723 (784)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245667777665
No 214
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.66 E-value=0.00012 Score=75.49 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=36.9
Q ss_pred CCCCCCCchhHHHHHHHHh--------------CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFK--------------DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999887753 2356788999999999999999987
No 215
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00041 Score=73.87 Aligned_cols=163 Identities=13% Similarity=0.188 Sum_probs=90.4
Q ss_pred CCCCCCCchhHHHHHHHH----h---------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELF----K---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
..+.|.++.+++|.+.+. . ...+-|.++|++|.|||.||+++++ .. ....+.++.++-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~----~~~f~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QT----NATFLKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HH----TCEEEEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--Hh----CCCEEEEehhhhhh-
Confidence 557899998888877643 1 1257899999999999999999998 32 23233444432110
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCC-------c----hH-------HHhhhhcc
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSG-------S----ES-------LLQKFKFQ 264 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~-------~----~~-------~~~~~~~~ 264 (784)
. ...+....++.++ ..-...+++|++|+++.. . .. ++..+...
T Consensus 254 -------------~-----~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 254 -------------M-----YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp -------------S-----CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred -------------c-----ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 0 0011112223333 111356899999998311 0 00 22222222
Q ss_pred C--CCceEEEeccccc---c---c---CCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc
Q 003950 265 L--PYYKILVTSRSVF---P---Q---FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC 328 (784)
Q Consensus 265 ~--~gs~iivTtR~~~---~---~---~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 328 (784)
. .+-.||.||.... . . ....+.++..+.++-.++|..+..........+ ...|++.+.|.
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 2 2345566776541 1 1 122678888888888888876654332211111 35567777764
No 216
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.57 E-value=0.00036 Score=81.68 Aligned_cols=148 Identities=12% Similarity=0.097 Sum_probs=84.5
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhccccccc-----c-cCCceEEEEeCCCCCHHHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-----K-FKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-----~-f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
..++||+.++.++.+.|......-+.|+|.+|+|||++|+.+++ .+.. . ....++.++.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~--~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH--HHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHH--HHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 46899999999999999866667789999999999999999987 3311 1 2232322222111
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCC---------chHHHhhhhcc--CCCceEEEeccccc
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSG---------SESLLQKFKFQ--LPYYKILVTSRSVF 278 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~---------~~~~~~~~~~~--~~gs~iivTtR~~~ 278 (784)
+... . ........++.+++.+ ..++.+|++|++... .......+... ..+..+|.+|....
T Consensus 254 ---~~~~-~---~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 254 ---LAGT-K---YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQE 326 (758)
T ss_dssp ----CCC-C---CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHH
T ss_pred ---hccc-c---ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchH
Confidence 0000 0 0111222333333222 345789999999754 11222223222 22345665554321
Q ss_pred ----ccCC-------CceeccCCCHHHHHHHHHHHh
Q 003950 279 ----PQFG-------SGYDLKPLNDEAARTLFRYSA 303 (784)
Q Consensus 279 ----~~~~-------~~~~l~~L~~~~a~~lf~~~a 303 (784)
.... ..+.++..+.++..+++...+
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1110 157889999999888887544
No 217
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.55 E-value=0.00035 Score=72.07 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=36.5
Q ss_pred CCCCCCchhHHHHHHHHhC---------CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 138 VTPGLDVPLQELKLELFKD---------GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 5689999999988888732 136899999999999999999987
No 218
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.44 E-value=0.0021 Score=66.79 Aligned_cols=161 Identities=17% Similarity=0.264 Sum_probs=90.6
Q ss_pred CCCCCCCchhHHHHHHHHh-----CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC-CCHHHHHHHH
Q 003950 137 PVTPGLDVPLQELKLELFK-----DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQKV 210 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i 210 (784)
..++|.+..++.+...+.. .....+.|+|++|+||||||+.+++ ..... +.... +.. ....+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~--~l~~~----~~~~s-g~~~~~~~~----- 92 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS--ELQTN----IHVTS-GPVLVKQGD----- 92 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH--HHTCC----EEEEE-TTTCCSHHH-----
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC----EEEEe-chHhcCHHH-----
Confidence 4578888777777666652 2347799999999999999999997 33211 11111 111 11111
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCchH----HHhhhhccC------------------CCc
Q 003950 211 YQHKGYAVPEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGSES----LLQKFKFQL------------------PYY 268 (784)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~------------------~gs 268 (784)
+...+..+ .++.++++|++...... +...+.... +..
T Consensus 93 --------------------l~~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 93 --------------------MAAILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp --------------------HHHHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCC
T ss_pred --------------------HHHHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 11111111 23447778887654321 211111110 111
Q ss_pred eEE-Eeccccc------ccCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHH
Q 003950 269 KIL-VTSRSVF------PQFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALT 333 (784)
Q Consensus 269 ~ii-vTtR~~~------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 333 (784)
.++ .|++... ......+.+++.+.++-.+++.+.+...+. ...++.+..|++++.|.|-.+.
T Consensus 152 ~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHH
T ss_pred EEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHH
Confidence 222 2333221 112225789999999999999887643222 2246788999999999996544
No 219
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.42 E-value=7.9e-05 Score=75.19 Aligned_cols=45 Identities=20% Similarity=0.137 Sum_probs=35.8
Q ss_pred CCCCCCCCchhHHHHHHHHh------------CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 136 PPVTPGLDVPLQELKLELFK------------DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-..++|.+..++++.+.+.. ...+-+.|+|++|+|||++|+.+++
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 35689999998888776641 1134488999999999999999997
No 220
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.41 E-value=0.00014 Score=65.82 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=34.7
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeC
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS 198 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~ 198 (784)
..++|...+. ...|..-....++|+|..|+|||||++.++.. .... ...++++...
T Consensus 18 ~f~~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~--~~~~-g~~~~~~~~~ 73 (149)
T 2kjq_A 18 KFLGTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQ--ALEA-GKNAAYIDAA 73 (149)
T ss_dssp CCCSCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHH--HHTT-TCCEEEEETT
T ss_pred hcCcCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHH--HHhc-CCcEEEEcHH
Confidence 4445554332 33333224578999999999999999999873 3221 1225566654
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.40 E-value=0.0011 Score=77.53 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=39.4
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.++||+.+++++...|......-+.++|++|+|||++|+.+++
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999866666688999999999999999987
No 222
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.39 E-value=0.00054 Score=74.84 Aligned_cols=170 Identities=11% Similarity=0.159 Sum_probs=96.2
Q ss_pred CCCCCCCchhHHHHHHHHh-------------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
..++|.+..++++.+++.. ...+-|.|+|++|+|||++|+++++ .. ....+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~----~~~fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ET----GAFFFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HC----SSEEEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--Hh----CCCEEEEEch-----
Confidence 4589999999999887752 3356799999999999999999987 33 2223344421
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCC--------Cc-------hHHHhhhhccC--
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWS--------GS-------ESLLQKFKFQL-- 265 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~--------~~-------~~~~~~~~~~~-- 265 (784)
+ +...+. ......+...+ ....+++.+|+||++.. .. ..++..+....
T Consensus 273 -~----l~~~~~---------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~ 338 (489)
T 3hu3_A 273 -E----IMSKLA---------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (489)
T ss_dssp -H----HHTSCT---------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT
T ss_pred -H----hhhhhc---------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC
Confidence 1 111110 11112223333 22246678999999821 11 11333333222
Q ss_pred CCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCc-hhHHHHH
Q 003950 266 PYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGC-PLALTVV 335 (784)
Q Consensus 266 ~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 335 (784)
.+..||.||.... . .....+.++..+.++-.+++..++....... .....++++.+.|. +-.+..+
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~----~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD----DVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT----TCCHHHHHHTCTTCCHHHHHHH
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc----hhhHHHHHHHccCCcHHHHHHH
Confidence 2345555665441 1 1223688899999999999988764332211 11235566667664 4444433
No 223
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.37 E-value=0.0028 Score=67.68 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=74.4
Q ss_pred ccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccchhhhCCCCC
Q 003950 640 GLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELPERIGELCSL 719 (784)
Q Consensus 640 ~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L 719 (784)
.|.++.+|+.+.+..+ ....-...+.++++|+.+.+.. .....-...|.++.+|+.+.|..+ ....-...|..|.+|
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 4556777888877652 2322234567788888888864 333333356788899999999764 333334567889999
Q ss_pred CEEeccCCCCCCcC-hhhhCCCCCCEEeCCCCc
Q 003950 720 KTLCLKGCSMFELP-SSILNLENLEVVKCDEET 751 (784)
Q Consensus 720 ~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~~~ 751 (784)
+.+.+..+ ++.++ ..+.+|++|+.+++.++.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 99999654 77775 467889999999988753
No 224
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.36 E-value=0.0021 Score=73.74 Aligned_cols=164 Identities=9% Similarity=0.153 Sum_probs=94.9
Q ss_pred CCCCCCCchhHHHHHHHH----h---------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELF----K---------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
..+.|.++.+++|.+++. . ..++-|.++|++|+|||+||+++++ +.. ...+.++.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg----~~~~~v~~~~---- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETG----AFFFLINGPE---- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTT----CEEEEEEHHH----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhC----CeEEEEEhHH----
Confidence 457899999988887764 1 1257899999999999999999998 332 2234454321
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc-----------hHHHhh----hhcc--C
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS-----------ESLLQK----FKFQ--L 265 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~-----------~~~~~~----~~~~--~ 265 (784)
+... ...+....++.++ ......+.+|++|+++... ..+... +... .
T Consensus 274 ------l~sk---------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 274 ------IMSK---------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp ------HHSS---------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred ------hhcc---------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 1110 1122233444444 3335778999999984321 112222 2111 1
Q ss_pred CCceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch
Q 003950 266 PYYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP 329 (784)
Q Consensus 266 ~gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 329 (784)
.+..||.||.... . .....+.++..+.++-.++|..+........+. ....|++++.|.-
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv----dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV----DLEQVANETHGHV 407 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC----CHHHHHHHCCSCC
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc----CHHHHHHhcCCCC
Confidence 2344555665441 1 123368888888888888887665332221111 2456778888764
No 225
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.33 E-value=0.0022 Score=63.96 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=34.7
Q ss_pred CCCCCCCCchhHHHHHHHH---h---------CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 136 PPVTPGLDVPLQELKLELF---K---------DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-..++|.+..++++.+.+. . ...+-+.|+|++|+||||+|+.+++
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3568999988877766543 1 1134688999999999999999987
No 226
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.33 E-value=0.002 Score=68.93 Aligned_cols=214 Identities=14% Similarity=0.060 Sum_probs=132.2
Q ss_pred hhccCCCCCcEEEeecc-cccCCcCcCccccCCCCCCCEEEecccC--CCCccccccccCceeeeeeccccccccCcccc
Q 003950 539 KFLEKMDKLKVMIVTNY-GFFPAELSNIQVFGALSNLKRIRLEHVS--LPSLTTVRMKHLQNVSLVMCNVDQVVQNSTFH 615 (784)
Q Consensus 539 ~~l~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~l~~L~~L~L~~n~--l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 615 (784)
.+|.++++|+.+.+.++ ..++... |..+.+|+.+.+..+- +....+..+..|+.+.+..+... .. .
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~I~~~~-----F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~-i~-----~ 224 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMETLHNGL-----FSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYY-LG-----D 224 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCEECTTT-----TTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCE-EC-----T
T ss_pred hhhcccCCCcEEecCCccceecccc-----ccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceE-ee-----h
Confidence 46777888888877653 2233322 6677777777776541 22224445566666655443211 10 1
Q ss_pred ccccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCC
Q 003950 616 FSDAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNL 695 (784)
Q Consensus 616 ~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L 695 (784)
......+|+.+.+... ....-...+.++..|+.+.+..+ ....-...+..+..|+.+...... .....+..+.+|
T Consensus 225 ~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L 299 (394)
T 4fs7_A 225 FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSL 299 (394)
T ss_dssp TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTC
T ss_pred hhcccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---eccccccccccc
Confidence 1124567888877643 22223445778889999998764 333334567788889888876532 122457788999
Q ss_pred CEEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcC-hhhhCCCCCCEEeCCCCchhcH--HHHhhcCCCc-EEeeec
Q 003950 696 NFLDISECLNIQELPERIGELCSLKTLCLKGCSMFELP-SSILNLENLEVVKCDEETAYQW--EYFQLGQAKF-RIEVIQ 771 (784)
Q Consensus 696 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~~~~~~~--~~~~~~lp~L-~i~~~~ 771 (784)
+.+.+..+ ....-...|..+++|+.+++..+ ++.++ ..+.+|++|+.+.+..+ .... ..+.. +++| .|..+.
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~-C~~L~~i~lp~ 375 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG-CINLKKVELPK 375 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT-CTTCCEEEEEG
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC-CCCCCEEEECC
Confidence 99999764 33333456788999999999754 77775 46789999999999765 2222 22333 6777 355544
Q ss_pred c
Q 003950 772 E 772 (784)
Q Consensus 772 ~ 772 (784)
+
T Consensus 376 ~ 376 (394)
T 4fs7_A 376 R 376 (394)
T ss_dssp G
T ss_pred C
Confidence 3
No 227
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.33 E-value=0.0012 Score=71.36 Aligned_cols=164 Identities=13% Similarity=0.128 Sum_probs=91.5
Q ss_pred CCCCCCCchhHHHHHHHH---hC---------CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH
Q 003950 137 PVTPGLDVPLQELKLELF---KD---------GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK 204 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~---~~---------~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~ 204 (784)
..++|.+..++++.+.+. .. -.+-|.|+|++|+|||+||+.+++ +.. ...+.++.++-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~----~~f~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EAN----VPFFHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHT----CCEEEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcC----CCeeeCCHHHHHHH-
Confidence 468999988877776654 11 134588999999999999999997 322 22334443322110
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-cccCCCcEEEEEeCCCCCc------------h--H----HHhhhhcc-
Q 003950 205 GIVQKVYQHKGYAVPEFQTDEDAINDLERLL-KPIRPEAILLVLDDVWSGS------------E--S----LLQKFKFQ- 264 (784)
Q Consensus 205 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~kr~LlVlDdv~~~~------------~--~----~~~~~~~~- 264 (784)
+ .......++.++ ......+.+|+||++.... + . ++..+...
T Consensus 89 ---------~---------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 89 ---------F---------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp ---------C---------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred ---------H---------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 0 001112233333 2224678999999984421 0 1 22222211
Q ss_pred -CCCceEEEeccccc------cc---CCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch
Q 003950 265 -LPYYKILVTSRSVF------PQ---FGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP 329 (784)
Q Consensus 265 -~~gs~iivTtR~~~------~~---~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 329 (784)
..+..||.||.... .. ....+.++..+.++-.+++..++......... ....|++.+.|..
T Consensus 151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v----~l~~la~~t~G~s 221 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV----NLEIIAKRTPGFV 221 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh----hHHHHHHhcCCCc
Confidence 23456666666541 11 22267788888888788887666432211111 1345788888876
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.26 E-value=0.00099 Score=66.88 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=33.9
Q ss_pred CCCCCCCchhHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..+.++.+.+. ......|.|+|.+|+|||++|+.+++
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 347999999998887776 23345688999999999999999987
No 229
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.21 E-value=0.0006 Score=69.85 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=37.0
Q ss_pred CCCCCCCchhHHHHHHHHh--CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFK--DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 3579999999999888872 4455688999999999999999987
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.13 E-value=0.0036 Score=63.70 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+.+.++|++|+|||+||+++++
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999998
No 231
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.00 E-value=0.0063 Score=66.22 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=35.0
Q ss_pred CCCCCCCchhHHHHHHHH---hC--CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELF---KD--GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~---~~--~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..++.+..++. .+ ..+-+.++|++|+|||++|+++++
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 678999998886655544 22 235789999999999999999987
No 232
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.94 E-value=0.0029 Score=61.23 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=33.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIV 207 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~ 207 (784)
..++.|+|.+|+||||||..++. . -..+++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~----~--~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL----L--SGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH----H--HCSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----H--cCCcEEEEECCCCCCHHHHH
Confidence 46999999999999999999986 1 13357788876655555444
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.94 E-value=0.0014 Score=76.40 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=36.6
Q ss_pred CCCCCCCchhHHHHHHHHhC---------CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKD---------GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999988888721 123799999999999999999987
No 234
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.94 E-value=0.018 Score=62.67 Aligned_cols=166 Identities=11% Similarity=0.098 Sum_probs=91.1
Q ss_pred CCCCCCCCCchhHHHHHHHH---hC---------CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCC
Q 003950 135 PPPVTPGLDVPLQELKLELF---KD---------GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPN 202 (784)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~---~~---------~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~ 202 (784)
.-..++|.+..+.++.+... .. -.+-|.|+|++|+||||||++++. ... ...+.++.++-..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~--~~~----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EAR----VPFITASGSDFVE 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH--HTT----CCEEEEEGGGGTS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH--HhC----CCEEEEehhHHHH
Confidence 34568999988777766544 11 123489999999999999999997 322 2234454332110
Q ss_pred HHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcccC-CCcEEEEEeCCCCC-----------ch-------HHHhhhhc
Q 003950 203 VKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPIR-PEAILLVLDDVWSG-----------SE-------SLLQKFKF 263 (784)
Q Consensus 203 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l~-~kr~LlVlDdv~~~-----------~~-------~~~~~~~~ 263 (784)
. ........+..+++... ..+.++++|++... .+ .++..+..
T Consensus 103 --------------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 --------------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp --------------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred --------------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0 01112234455554332 35689999998421 11 12222222
Q ss_pred cCC--CceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCch
Q 003950 264 QLP--YYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCP 329 (784)
Q Consensus 264 ~~~--gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 329 (784)
+.. +..|+.||.... . .....+.++..+.++-.+++..++....... ......|+..+.|..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~----dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE----DVDLALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC----SSTTHHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHhcCCCC
Confidence 222 234555555441 1 1233678888888888888876653221111 112445677777765
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.87 E-value=0.004 Score=69.21 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=34.1
Q ss_pred CCCCCCchhHHHHHHHH------hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 138 VTPGLDVPLQELKLELF------KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|.+...+.+.+.+. .....++.++|++|+||||||+.++.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 46888887777765544 12356899999999999999999987
No 236
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.82 E-value=0.0067 Score=71.65 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=36.1
Q ss_pred CCCCCCchhHHHHHHHHhC---------CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 138 VTPGLDVPLQELKLELFKD---------GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999988887621 125899999999999999999987
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.80 E-value=0.0032 Score=65.43 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=36.2
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|++..++.+...+..+ .-+.++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHH
Confidence 46799999999888887754 3688999999999999999987
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.77 E-value=0.00072 Score=69.33 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=32.2
Q ss_pred hHHHHHHHHhC---CcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCCceEEEEe
Q 003950 146 LQELKLELFKD---GRQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTV 197 (784)
Q Consensus 146 ~~~l~~~L~~~---~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~wv~~ 197 (784)
++.+.+++..- ....+.|+|++|+|||+||.++++ ... .. ...+.++++
T Consensus 137 ~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~-g~~v~~~~~ 189 (308)
T 2qgz_A 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKK-GVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHS-CCCEEEEEH
T ss_pred HHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhc-CCcEEEEEH
Confidence 33444555532 257899999999999999999998 333 22 123556654
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.75 E-value=0.0076 Score=70.30 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=37.5
Q ss_pred CCCCCCCchhHHHHHHHHh-------------CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..+++|.+++.. .....|.|+|++|+||||||+.+..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4589999999999888762 2346799999999999999999987
No 240
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.67 E-value=0.019 Score=56.98 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=32.6
Q ss_pred CCCCCCCchhHHHHHHHH--hC----------CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELF--KD----------GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~--~~----------~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..+.++.+... .. -.+-+.|+|++|+||||||+.++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 467898877766655443 11 122389999999999999999997
No 241
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.61 E-value=0.0044 Score=72.36 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=36.1
Q ss_pred CCCCCCCchhHHHHHHHHh--C-------CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFK--D-------GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~--~-------~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..++.+...+.. . ....+.++|++|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 4578999999888887761 1 234799999999999999999987
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.53 E-value=0.034 Score=55.71 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=75.5
Q ss_pred CCCCCCCchhHHHHHHHH---h----------CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCH
Q 003950 137 PVTPGLDVPLQELKLELF---K----------DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNV 203 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~---~----------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~ 203 (784)
..+.|.++.+++|.+.+. . .-.+-+.++|++|+||||||+.++. ... ...+.+..++-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~--~~~----~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN--ESG----LNFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH--HTT----CEEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH--HcC----CCEEEEEcHHHHhh
Confidence 456788887777776543 0 1123399999999999999999987 222 22334443221110
Q ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhccc-CCCcEEEEEeCCCCCc-----------hH----HHhhhhccCC-
Q 003950 204 KGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKPI-RPEAILLVLDDVWSGS-----------ES----LLQKFKFQLP- 266 (784)
Q Consensus 204 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~kr~LlVlDdv~~~~-----------~~----~~~~~~~~~~- 266 (784)
........+..+++.. ...+.++++|++.... .. ++..+..+..
T Consensus 84 -------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 84 -------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp -------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred -------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 0011112233333211 3457899999985421 01 1222222211
Q ss_pred -CceEEEeccccc------c---cCCCceeccCCCHHHHHHHHHHHh
Q 003950 267 -YYKILVTSRSVF------P---QFGSGYDLKPLNDEAARTLFRYSA 303 (784)
Q Consensus 267 -gs~iivTtR~~~------~---~~~~~~~l~~L~~~~a~~lf~~~a 303 (784)
..-++.+|.... . .....+.++..+.++-.++|....
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 233445555441 1 233367788888888888887665
No 243
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.51 E-value=0.0073 Score=60.70 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC-----CCChHHH-HHHH
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPE-----FQTDEDA-INDL 231 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l 231 (784)
.++-|.|.+|+||||||.+++. .....+ ...++|++..+.++.. .+++++..... ..+.++. ...+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 4789999999999999988876 333332 4558899988877764 25666654321 1122332 2222
Q ss_pred HHHhcccCCCcEEEEEeCCCC
Q 003950 232 ERLLKPIRPEAILLVLDDVWS 252 (784)
Q Consensus 232 ~~~~~~l~~kr~LlVlDdv~~ 252 (784)
..+-..-.++.-+||+|-|-.
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHhhccCceEEEEecccc
Confidence 222011246788999999854
No 244
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.43 E-value=0.056 Score=57.48 Aligned_cols=126 Identities=10% Similarity=0.153 Sum_probs=82.8
Q ss_pred ccCCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCc-hhccCCCCCCEEEeecCCCCCCCcccccCCCCCC
Q 003950 618 DAFPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALP-EGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLN 696 (784)
Q Consensus 618 ~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 696 (784)
..+.+|+.+.+..+ ....-...+.++.+|+.+.+.. . ...++ ..+..+.+|+.+.|.. +....-...|.++++|+
T Consensus 262 ~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 262 DSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCC
T ss_pred eecccccEEecccc-cceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCC
Confidence 36778888888653 2333345678899999999975 3 44444 5677899999999976 33333346788999999
Q ss_pred EEeccCCCCCCccchhhhCCCCCCEEeccCCCCCCcChhhhCCCCCCEEeCCCC
Q 003950 697 FLDISECLNIQELPERIGELCSLKTLCLKGCSMFELPSSILNLENLEVVKCDEE 750 (784)
Q Consensus 697 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~ 750 (784)
.+.+..+ ....-...|.+|++|+.+++.++... + ..+..+.+|+.+.+..+
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC--------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCC
Confidence 9999764 33333457889999999999887532 1 34566777877776544
No 245
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.35 E-value=0.076 Score=56.04 Aligned_cols=126 Identities=13% Similarity=0.031 Sum_probs=67.3
Q ss_pred CCceEEEEEeCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEe
Q 003950 620 FPNLLEIDIDYCNDLIELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLD 699 (784)
Q Consensus 620 l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 699 (784)
+.+|+.+.+..+ ........+.++..|+.+.+..+ ....-...+..+.+|+.+.+.. .....-...+.++++|+.+.
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccc
Confidence 445555555432 22222334556666777766542 2222233455666777777654 22222234556667777777
Q ss_pred ccCCCCCCccchhhhCCCCCCEEeccCCCCCCcC-hhhhCCCCCCEEeCCC
Q 003950 700 ISECLNIQELPERIGELCSLKTLCLKGCSMFELP-SSILNLENLEVVKCDE 749 (784)
Q Consensus 700 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~ 749 (784)
+.++.....-...|.++.+|+.+.+..+ ++.++ ..+.+|++|+.+.+..
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 7655333333345666777777777543 55554 3456677777666643
No 246
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.34 E-value=0.0012 Score=66.83 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=26.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEe
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 197 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~ 197 (784)
.+++.|+|++|+|||+||.++... ... .++|+++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~----~G~--~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA----LGG--KDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH----HHT--TSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh----CCC--CEEEEEe
Confidence 367889999999999999999873 122 3557877
No 247
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.33 E-value=0.016 Score=56.55 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=31.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 209 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 209 (784)
..+++|+|.+|+|||||++.++.. ... -...++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~-~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLR-DGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHH-HTCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHH-CCCeEEEEEccc--CHHHHHHH
Confidence 468999999999999999998852 221 123466766533 34444443
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.32 E-value=0.0067 Score=62.64 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=40.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccc---CCceEEEEeCCCCCHHHHHHHHHHHcCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF---KDNIFFVTVSQTPNVKGIVQKVYQHKGY 216 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 216 (784)
..++.|+|.+|+||||||.+++........+ ...++|++....++...+.. +++.++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~ 167 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGL 167 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCC
Confidence 4699999999999999999987632211111 45688999888777776554 3455543
No 249
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.18 E-value=0.0092 Score=58.67 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=37.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccc---cCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK---FKDNIFFVTVSQTPNVKGIVQKVYQHKG 215 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~~wv~~~~~~~~~~~~~~i~~~l~ 215 (784)
-.++.|+|.+|+|||||+..+......... ...+++|++....+....+. .+++.++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g 83 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYG 83 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcC
Confidence 469999999999999999998762111110 13457788877655555443 3444444
No 250
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.16 E-value=0.018 Score=59.85 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=40.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccc---cCCceEEEEeCCCCCHHHHHHHHHHHcCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGK---FKDNIFFVTVSQTPNVKGIVQKVYQHKGY 216 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 216 (784)
..++.|+|.+|+||||||..++........ -...++|++....++...+.. +++.++.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 579999999999999999998763222111 244688999888777766544 3444443
No 251
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.13 E-value=0.0082 Score=62.00 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=40.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccc---------ccC----CceEEEEeCCCCCHHHHHHHHHHHcCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLG---------KFK----DNIFFVTVSQTPNVKGIVQKVYQHKGY 216 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---------~f~----~~~~wv~~~~~~~~~~~~~~i~~~l~~ 216 (784)
..++.|+|.+|+|||+||.+++....... ... ..++|++....++...+.+. ++.++.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~ 168 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGI 168 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCC
Confidence 47999999999999999998876322211 111 46889998887777766543 455543
No 252
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.00 E-value=0.0041 Score=59.95 Aligned_cols=111 Identities=9% Similarity=0.092 Sum_probs=59.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh-
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL- 235 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~- 235 (784)
...++.|+|..|+||||++..+.. +...+-. .++.+....... -..+++..++...+... .... ..+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~-kVli~~~~~d~r---~~~~i~srlG~~~~~~~-~~~~-~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADV-KYLVFKPKIDTR---SIRNIQSRTGTSLPSVE-VESA-PEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTC-CEEEEEECCCGG---GCSSCCCCCCCSSCCEE-ESST-HHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCC-EEEEEEeccCch---HHHHHHHhcCCCccccc-cCCH-HHHHHHHH
Confidence 457899999999999999988877 3333322 254554333211 11234444443222111 0111 1222222
Q ss_pred cccCCC-cEEEEEeCCCCCchHH---HhhhhccCCCceEEEecccc
Q 003950 236 KPIRPE-AILLVLDDVWSGSESL---LQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 236 ~~l~~k-r~LlVlDdv~~~~~~~---~~~~~~~~~gs~iivTtR~~ 277 (784)
+.+.+. .-+||+|.+....... +..+.. .|-.||+|-++.
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEeccc
Confidence 333334 4499999996544332 333332 378899998854
No 253
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.00 E-value=0.017 Score=59.85 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=52.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC-----CCCChHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP-----EFQTDEDAINDLE 232 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 232 (784)
.+++.|+|++|+||||||.+++.. ... -...++|++....++.. .+++++.... ...+.++....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~--~~~-~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAE--AQK-MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH--HHH-TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHh-cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 479999999999999999998863 222 22347788877766654 3444443321 1123344444444
Q ss_pred HHhcccCCCcEEEEEeCCCC
Q 003950 233 RLLKPIRPEAILLVLDDVWS 252 (784)
Q Consensus 233 ~~~~~l~~kr~LlVlDdv~~ 252 (784)
.+.+ ..+.-++|+|.+-.
T Consensus 133 ~l~~--~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVR--SGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHH--TSCCSEEEEECTTT
T ss_pred HHhh--hcCCCeEEehHhhh
Confidence 4442 24556899998743
No 254
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.85 E-value=0.014 Score=63.72 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=36.2
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..++.+...+..+ .-|.++|++|+|||+||+.+++
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHH
Confidence 35799999998888777754 3788999999999999999997
No 255
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.78 E-value=0.059 Score=57.30 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 256
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.66 E-value=0.028 Score=58.37 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=51.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC-----CCChHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPE-----FQTDEDAINDLE 232 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 232 (784)
.+++.|+|.+|+||||||.++... .... ...++|++....++.. .++.++..... ..+.++....+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~-g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAA-GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhC-CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 478999999999999999998763 2221 3347899987766653 24445432211 112333333333
Q ss_pred HHhcccCCCcEEEEEeCCC
Q 003950 233 RLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 233 ~~~~~l~~kr~LlVlDdv~ 251 (784)
.+.+ ..+.-+||+|.+-
T Consensus 133 ~l~~--~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVR--SGALDIIVIDSVA 149 (349)
T ss_dssp HHHT--TTCCSEEEEECGG
T ss_pred HHHh--cCCCCEEEEcChH
Confidence 3332 3456799999874
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.62 E-value=0.031 Score=58.27 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=51.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC-----CCCChHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP-----EFQTDEDAINDLE 232 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 232 (784)
.+++.|.|.+|+||||||..++.. .... ...++|++....++.. .++.++.... ...+.++....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~-g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKA-GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHC-CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 468999999999999999988763 2221 2347899988776654 2344443211 1122344444444
Q ss_pred HHhcccCCCcEEEEEeCCC
Q 003950 233 RLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 233 ~~~~~l~~kr~LlVlDdv~ 251 (784)
.+.+ ..+.-+||+|.+.
T Consensus 146 ~l~~--~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVR--SGAIDVVVVDSVA 162 (366)
T ss_dssp HHHT--TTCCSEEEEECTT
T ss_pred HHHh--cCCCCEEEEeChH
Confidence 4442 2455689999873
No 258
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.56 E-value=0.017 Score=53.79 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=60.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC---CCHHHHHHHHHH---HcCCCCC-CCCCh----HH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT---PNVKGIVQKVYQ---HKGYAVP-EFQTD----ED 226 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~---~~~~~~~~~i~~---~l~~~~~-~~~~~----~~ 226 (784)
...|-|++-.|.||||.|-...- +..++ ..++..+..-.. .....++..+.- +.+.... ..... ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~-G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGH-GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHT-TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHC-CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 34666777777999999987765 33322 223556654332 233344443310 0011000 00010 11
Q ss_pred HHHHHHHHhcccC-CCcEEEEEeCCC-------CCchHHHhhhhccCCCceEEEecccc
Q 003950 227 AINDLERLLKPIR-PEAILLVLDDVW-------SGSESLLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 227 ~~~~l~~~~~~l~-~kr~LlVlDdv~-------~~~~~~~~~~~~~~~gs~iivTtR~~ 277 (784)
....+....+.+. ++-=|||||++. -..+.++..+...-....||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 2223333334444 444599999982 22234555565555678999999986
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.51 E-value=0.009 Score=56.88 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=31.4
Q ss_pred CCchhHHHHHHHHh---CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 142 LDVPLQELKLELFK---DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 142 r~~~~~~l~~~L~~---~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
|++.++++.+.+.. ....+|+|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44566777777763 3468999999999999999999876
No 260
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.48 E-value=0.086 Score=56.07 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=27.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEe
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 197 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~ 197 (784)
...+|.++|.+|+||||++..++. ..+.. ..++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~--~l~~~-G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY--FYKKR-GYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH--HHHHT-TCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHc-CCeEEEEec
Confidence 468999999999999999998876 23222 334545554
No 261
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.48 E-value=0.019 Score=53.84 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=55.5
Q ss_pred CCCcEEEccCCCCCCC-----CchhccCCCCCCEEEeecCCCCC----CCcccccCCCCCCEEeccCCCCCCc----cch
Q 003950 645 VSIKKLRITNCHKLSA-----LPEGIGKLVNLQMLTLASCTDLS----ALPDTIGNLSNLNFLDISECLNIQE----LPE 711 (784)
Q Consensus 645 ~~L~~L~L~~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~----~p~ 711 (784)
+.|+.|+|++|..++. +-..+..-+.|+.|+|++|.+.. .+...+..-+.|++|+|+.|.+... +-.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 4555555554311221 22344455566666666655432 2233344445677777776654331 223
Q ss_pred hhhCCCCCCEEeccCCC---CC-----CcChhhhCCCCCCEEeCCCCch
Q 003950 712 RIGELCSLKTLCLKGCS---MF-----ELPSSILNLENLEVVKCDEETA 752 (784)
Q Consensus 712 ~l~~l~~L~~L~l~~n~---l~-----~lp~~l~~l~~L~~L~l~~~~~ 752 (784)
.+..-+.|++|+|++|. +. .+...+..=+.|+.|+++.+..
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34445567777776542 33 2333455556777777766543
No 262
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.46 E-value=0.14 Score=53.23 Aligned_cols=158 Identities=11% Similarity=0.021 Sum_probs=97.7
Q ss_pred HHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHH
Q 003950 148 ELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDED 226 (784)
Q Consensus 148 ~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 226 (784)
++.+.+...-.++..++|..|.||++.|..+.+ .+. ..|+. +..+.+....+..++...+..
T Consensus 8 ~l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-------------- 70 (343)
T 1jr3_D 8 QLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQ--VAAAQGFEE-HHTFSIDPNTDWNAIFSLCQA-------------- 70 (343)
T ss_dssp THHHHHHHCCCSEEEEEESCHHHHHHHHHHHHH--HHHHHTCCE-EEEEECCTTCCHHHHHHHHHH--------------
T ss_pred HHHHHHhcCCCcEEEEECCcHHHHHHHHHHHHH--HHHhCCCCe-eEEEEecCCCCHHHHHHHhcC--------------
Confidence 344555544567999999999999999998876 332 23432 112233333444444333211
Q ss_pred HHHHHHHHhcccCCCcEEEEEeCCCC-Cc----hHHHhhhhccCCCceEEEeccc--------c----cccCCCceeccC
Q 003950 227 AINDLERLLKPIRPEAILLVLDDVWS-GS----ESLLQKFKFQLPYYKILVTSRS--------V----FPQFGSGYDLKP 289 (784)
Q Consensus 227 ~~~~l~~~~~~l~~kr~LlVlDdv~~-~~----~~~~~~~~~~~~gs~iivTtR~--------~----~~~~~~~~~l~~ 289 (784)
.-+-+++-++|+|++.. .. +.+...+....+++.+|++|.. + ....+..++..+
T Consensus 71 ---------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~ 141 (343)
T 1jr3_D 71 ---------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQT 141 (343)
T ss_dssp ---------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECC
T ss_pred ---------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeC
Confidence 01135677889999866 32 2244444444557777776643 1 122344788999
Q ss_pred CCHHHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHcCCchhHHHH
Q 003950 290 LNDEAARTLFRYSANLQDGNSYIPDENLVNKILRACKGCPLALTV 334 (784)
Q Consensus 290 L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 334 (784)
++.++....+...+-..+. .-.++.+..+++.++|.+.++..
T Consensus 142 l~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 142 PEQAQLPRWVAARAKQLNL---ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp CCTTHHHHHHHHHHHHTTC---EECHHHHHHHHHSSTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhchHHHHHHH
Confidence 9999988888777644332 12367888999999999877764
No 263
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.42 E-value=0.5 Score=49.62 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=78.3
Q ss_pred cccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCCCCccc-hhhhCCC
Q 003950 639 DGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLNIQELP-ERIGELC 717 (784)
Q Consensus 639 ~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~ 717 (784)
..+..+.+|+.+.+..+ ....-...+..+.+|+.+.+.. .....-...+.++.+|+.+.+..+ +..++ ..+..++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~-~v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~ 286 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK-NVTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT-TCCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCC-CccEeCccccceeehhcccccccc--ceecccccccccc
Confidence 34566778888888652 2222334567888999999976 333333456778899999998764 33443 4678899
Q ss_pred CCCEEeccCCCCCCcC-hhhhCCCCCCEEeCCCC
Q 003950 718 SLKTLCLKGCSMFELP-SSILNLENLEVVKCDEE 750 (784)
Q Consensus 718 ~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~~ 750 (784)
+|+.+.+.++.++.++ ..+.+|.+|+.+.+..+
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 9999999999898776 46789999999998754
No 264
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.38 E-value=0.025 Score=58.87 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC-----CCChHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPE-----FQTDEDAINDLE 232 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 232 (784)
.+++.|.|.+|+||||||.+++.. .... ...++|++....++... ++.++..... ....++..+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~-g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHC-CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 478999999999999999988763 2221 23478999877766442 3444432211 112233333333
Q ss_pred HHhcccCCCcEEEEEeCCC
Q 003950 233 RLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 233 ~~~~~l~~kr~LlVlDdv~ 251 (784)
.+.+ ..+.-+||+|.+.
T Consensus 135 ~l~~--~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALAR--SGAVDVIVVDSVA 151 (356)
T ss_dssp HHHH--HTCCSEEEEECGG
T ss_pred HHHh--ccCCCEEEEcCHH
Confidence 3322 2445689999873
No 265
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.27 E-value=0.025 Score=60.41 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=55.3
Q ss_pred HHHHHH-hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC-CHHHHHHHHHHHcC--------CCC
Q 003950 149 LKLELF-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKG--------YAV 218 (784)
Q Consensus 149 l~~~L~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~--------~~~ 218 (784)
.++.|. -..-+.++|+|.+|+|||||+..+.. .....+..-++++-+++.. ...++++.+...-. ...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~--~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~ 218 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIH--NIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQM 218 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHH--HHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECT
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHh--hhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcC
Confidence 344454 11234689999999999999999987 3333343324566676654 34455555543200 011
Q ss_pred CCCCChHH----HHHHHHHHhcccCCCcEEEEEeCCC
Q 003950 219 PEFQTDED----AINDLERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 219 ~~~~~~~~----~~~~l~~~~~~l~~kr~LlVlDdv~ 251 (784)
.+.+.... ..-.+.+.+...+++.+||++||+.
T Consensus 219 ~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 219 NEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11111000 0113334442226899999999983
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.16 E-value=0.0093 Score=55.43 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 267
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.06 E-value=0.027 Score=57.17 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=28.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEe
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 197 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~ 197 (784)
...+|.|+|.+|+||||++..++. ..... ..++.++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~-g~kV~lv~~ 140 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK--MFVDE-GKSVVLAAA 140 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHT-TCCEEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH--HHHhc-CCEEEEEcc
Confidence 357999999999999999999886 33322 334656654
No 268
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.02 E-value=0.046 Score=57.77 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=37.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccc---ccCCceEEEEeCCCCCHHHHHHHHHHHcCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLG---KFKDNIFFVTVSQTPNVKGIVQKVYQHKGY 216 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~ 216 (784)
-.++.|+|.+|+|||||+..++-...... .-..+++|++....+....+ ..+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 46999999999999999997653111111 12345778887766655543 335555553
No 269
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.02 E-value=0.028 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.|.|++|+||||.|+.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998886
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.92 E-value=0.013 Score=54.29 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 003950 159 QVIVVSAPGGYGKTTLVKKL 178 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v 178 (784)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999998
No 271
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.86 E-value=0.016 Score=55.42 Aligned_cols=35 Identities=34% Similarity=0.419 Sum_probs=26.6
Q ss_pred hHHHHHHHHh--CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 146 LQELKLELFK--DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 146 ~~~l~~~L~~--~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+++|.+.+.. ....+|+|+|..|.|||||++.+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344444432 4568999999999999999999876
No 272
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.86 E-value=0.077 Score=54.33 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
..++.|.|.+|+||||+|..++.+....+ ..++|++.. .+..++...+....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC--CCHHHHHHHHHHHH
Confidence 47999999999999999999876322222 346677664 45677777776553
No 273
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.85 E-value=0.067 Score=55.61 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=36.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccc---CCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF---KDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
-.++.|+|.+|+|||||+..++......... ...++|++....+....+ ..+.+..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~ 189 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNR 189 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHc
Confidence 5899999999999999999988632111111 244678887665544333 3344443
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.85 E-value=0.013 Score=54.06 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 275
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.78 E-value=0.011 Score=61.90 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..+..+...+......-|.|+|.+|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHH
Confidence 45899988665554444333334599999999999999999987
No 276
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.77 E-value=0.017 Score=59.53 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=33.4
Q ss_pred HHHHHH-hCCcEEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCCC
Q 003950 149 LKLELF-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTP 201 (784)
Q Consensus 149 l~~~L~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~~ 201 (784)
+++.+. -..-+.++|+|.+|+|||||++.+.+ .+.... +..++++-+++..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSCH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeEEEEEecCCh
Confidence 334444 23457899999999999999999876 333222 3335566676653
No 277
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.76 E-value=0.017 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+++|+|++|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999986
No 278
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.75 E-value=0.053 Score=57.95 Aligned_cols=40 Identities=33% Similarity=0.400 Sum_probs=29.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeC
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS 198 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~ 198 (784)
..++|.|+|.+|+||||++..++. ........++..++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~--~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK--FLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH--HHHHTSCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHhcCCeEEEEecC
Confidence 468999999999999999998886 3333223346566653
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.70 E-value=0.017 Score=53.69 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 280
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.64 E-value=0.092 Score=53.07 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=45.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCC-CCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHh
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ-TPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLL 235 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 235 (784)
...+++|+|.+|+||||++..++. .....-..++..+.... .....+.+....+..+.+........ .+...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~--~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~----~l~~al 177 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA--ISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKE----EFQQAK 177 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHH----HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHH----HHHHHH
Confidence 357999999999999999999876 33211122355555432 22333334444444443321111222 233333
Q ss_pred cccCCCcEEEEEeCC
Q 003950 236 KPIRPEAILLVLDDV 250 (784)
Q Consensus 236 ~~l~~kr~LlVlDdv 250 (784)
..+ .+.=++++|-.
T Consensus 178 ~~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 178 ELF-SEYDHVFVDTA 191 (296)
T ss_dssp HHG-GGSSEEEEECC
T ss_pred HHh-cCCCEEEEeCC
Confidence 333 34457888843
No 281
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.64 E-value=0.045 Score=58.10 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=27.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEe
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 197 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~ 197 (784)
...++.|+|.+|+||||++..++. ..... ..++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~--~l~~~-g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGK-GRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH--HHHTT-TCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHc-CCeEEEeec
Confidence 357899999999999999999886 33322 334555554
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.63 E-value=0.022 Score=54.12 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.8
Q ss_pred HhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 154 FKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 154 ~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
......+|+|+|++|.||||+|+.+..
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345578999999999999999999987
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.60 E-value=0.016 Score=55.06 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|.|+|++|+||||+|+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 284
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.57 E-value=0.017 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++++|+|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 285
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.55 E-value=0.02 Score=58.81 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=30.8
Q ss_pred CCCCchhHHHHHHHH----hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 140 PGLDVPLQELKLELF----KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 140 vGr~~~~~~l~~~L~----~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
|+.+.-++++.+.+. .+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 444455566666664 34466799999999999999998887
No 286
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.51 E-value=0.021 Score=60.04 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=35.3
Q ss_pred CCCCCCchhHHHHHHHH------h---------CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 138 VTPGLDVPLQELKLELF------K---------DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~------~---------~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|.+..++.+...+. . .....|.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 36899999998888773 0 1346789999999999999999997
No 287
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.49 E-value=0.025 Score=59.84 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=34.5
Q ss_pred CCCCCCchhHHHHHHHH------------------------------hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 138 VTPGLDVPLQELKLELF------------------------------KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 138 ~~vGr~~~~~~l~~~L~------------------------------~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|.+..++.|...+. ......+.++|++|+|||++|+.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 56899888888877762 01235689999999999999999987
No 288
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.46 E-value=0.047 Score=55.23 Aligned_cols=56 Identities=27% Similarity=0.194 Sum_probs=34.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCC-CCHHHHHHHHHHHcCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQT-PNVKGIVQKVYQHKGY 216 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 216 (784)
..+++++|.+|+||||++..++. ..... ..++.+++..-. ....+.+....+..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~--~~~~~-g~~v~l~~~D~~r~~a~~ql~~~~~~~~v 154 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY--FYKKK-GFKVGLVGADVYRPAALEQLQQLGQQIGV 154 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH--HHHHT-TCCEEEEECCCSSSHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHC-CCeEEEEecCCCCHHHHHHHHHHhccCCe
Confidence 57899999999999999998886 33222 334666665322 2223334444444443
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.45 E-value=0.018 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.44 E-value=0.015 Score=53.62 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|+|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 291
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.43 E-value=0.02 Score=54.44 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....+|+|+|+.|+|||||++.+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 292
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.27 E-value=0.039 Score=55.64 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|+|..|+||||||+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998876
No 293
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.24 E-value=0.086 Score=56.11 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=59.2
Q ss_pred HHHHHHH-hCCcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCCceEEEEeCCCC-CHHHHHHHHHHHcCCC------C
Q 003950 148 ELKLELF-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA------V 218 (784)
Q Consensus 148 ~l~~~L~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~ 218 (784)
+.++.|. -..-+.++|.|.+|+|||+|+..+.+ .+. .+-+. ++++-+++.. ...++++.+.+.-... .
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v-~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~r 218 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGY-SVFAGVGERTREGNDLYHEMIESGVINLKDATSK 218 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHH--HTTTTCSSE-EEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCC
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHH--hhHhhCCCE-EEEEECCCcchHHHHHHHHhhhccccccccCCce
Confidence 4455555 23456899999999999999999887 332 22233 5577777764 4566777776542211 0
Q ss_pred -----CCCCCh--H-----HHHHHHHHHhcccCCCcEEEEEeCC
Q 003950 219 -----PEFQTD--E-----DAINDLERLLKPIRPEAILLVLDDV 250 (784)
Q Consensus 219 -----~~~~~~--~-----~~~~~l~~~~~~l~~kr~LlVlDdv 250 (784)
...... . ...-.+.+.+..-+++.+||++||+
T Consensus 219 tvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 219 VALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 000111 0 1112233344222689999999998
No 294
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.23 E-value=0.023 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 295
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.21 E-value=0.046 Score=54.96 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=33.6
Q ss_pred CCCCCCCCchhHHHHHHHH--hC----------CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 136 PPVTPGLDVPLQELKLELF--KD----------GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~--~~----------~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-..++|.+..++++.+... .. -.+-+.|+|++|+||||||+.++.
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 3568999887777665543 11 022389999999999999999997
No 296
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.18 E-value=0.076 Score=61.03 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=33.5
Q ss_pred CCCCCCCchhHHHHHHHHh-------------CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFK-------------DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+.|.++.+++|.+.+.- ...+-|.++|++|.|||.+|+++++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH
Confidence 4567887777777666541 1145688999999999999999998
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.17 E-value=0.026 Score=52.20 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|+|+.|+||||+|+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 298
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.17 E-value=0.073 Score=56.90 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=60.5
Q ss_pred HHHHHH-hCCcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCCceEEEEeCCCC-CHHHHHHHHHHHcCCC-------C
Q 003950 149 LKLELF-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA-------V 218 (784)
Q Consensus 149 l~~~L~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~ 218 (784)
.++.|. -..-+.++|.|.+|+|||+|+..+.+ .+. .+-+. ++++-+++.. ...++++.+.+.-... .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v-~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGV-SVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHH--HTTTTCSSC-EEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHH--HHHhhCCCE-EEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 445555 23456799999999999999999887 332 23344 6688888765 4667777776542111 0
Q ss_pred -----CCCCCh-------HHHHHHHHHHhcccCCCcEEEEEeCCC
Q 003950 219 -----PEFQTD-------EDAINDLERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 219 -----~~~~~~-------~~~~~~l~~~~~~l~~kr~LlVlDdv~ 251 (784)
...... ....-.+.+.+..-+++.+||++||+.
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 000000 011223344443335899999999983
No 299
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.17 E-value=0.038 Score=53.51 Aligned_cols=34 Identities=29% Similarity=0.279 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 147 QELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 147 ~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.+...+.......|+|+|.+|+|||||+..+..
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3444444455678999999999999999999886
No 300
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.16 E-value=0.028 Score=52.90 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 301
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.13 E-value=0.027 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+++|+|+.|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997653
No 302
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.09 E-value=0.096 Score=55.96 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|.|+|.+|+||||+|..++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 303
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.06 E-value=0.025 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|+|.|+.|+||||+|+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 304
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.03 E-value=0.021 Score=53.21 Aligned_cols=22 Identities=55% Similarity=0.824 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999876
No 305
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.02 E-value=0.022 Score=54.20 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 306
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.00 E-value=0.029 Score=53.68 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999986
No 307
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.96 E-value=0.027 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 308
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.95 E-value=0.025 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|.|.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 309
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.95 E-value=0.031 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.711 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+++|+|+.|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 310
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.94 E-value=0.029 Score=55.52 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|.|.|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 311
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.94 E-value=0.022 Score=52.92 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 312
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.91 E-value=0.036 Score=53.43 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=28.6
Q ss_pred hhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 145 PLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 145 ~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+.+...+......+|+|+|.+|+|||||+..+..
T Consensus 17 ~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 17 LAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHH
Confidence 344555555455788999999999999999999886
No 313
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.85 E-value=0.025 Score=53.89 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 314
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.83 E-value=0.03 Score=53.25 Aligned_cols=23 Identities=48% Similarity=0.823 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999886
No 315
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.81 E-value=0.053 Score=56.32 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=55.5
Q ss_pred HhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHH--HHHHHHHHHcCCCCCCCCChHHHHHHH
Q 003950 154 FKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVK--GIVQKVYQHKGYAVPEFQTDEDAINDL 231 (784)
Q Consensus 154 ~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l 231 (784)
......+++|+|+.|.||||+.+.+.. .+.......+ +.+.+..... .. ..+..+... ........+.+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i--~t~ed~~e~~~~~~-~~~v~q~~~----~~~~~~~~~~L 189 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHI--LTIEDPIEFVHESK-KCLVNQREV----HRDTLGFSEAL 189 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEE--EEEESSCCSCCCCS-SSEEEEEEB----TTTBSCHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEE--EEccCcHHhhhhcc-ccceeeeee----ccccCCHHHHH
Confidence 333445999999999999999999876 3322222323 2222221100 00 000000000 00111222344
Q ss_pred HHHhcccCCCcEEEEEeCCCCCchHHHhhhhccCCCceEEEecccc
Q 003950 232 ERLLKPIRPEAILLVLDDVWSGSESLLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 232 ~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~iivTtR~~ 277 (784)
...+ ...+=+|++|++.+.+. ....+.....|..||+||...
T Consensus 190 a~aL---~~~PdvillDEp~d~e~-~~~~~~~~~~G~~vl~t~H~~ 231 (356)
T 3jvv_A 190 RSAL---REDPDIILVGEMRDLET-IRLALTAAETGHLVFGTLHTT 231 (356)
T ss_dssp HHHT---TSCCSEEEESCCCSHHH-HHHHHHHHHTTCEEEEEESCS
T ss_pred HHHh---hhCcCEEecCCCCCHHH-HHHHHHHHhcCCEEEEEEccC
Confidence 4444 67788999999974322 111222334566788888653
No 316
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.80 E-value=0.025 Score=52.95 Aligned_cols=22 Identities=55% Similarity=0.824 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.80 E-value=0.03 Score=53.18 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 318
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.78 E-value=0.036 Score=59.05 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=35.2
Q ss_pred CCCCCCCchhHHHHHHHHh--------------CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFK--------------DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..++.+...+.. ...+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4679998888888776631 1245699999999999999999987
No 319
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.77 E-value=0.025 Score=52.32 Aligned_cols=21 Identities=43% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.75 E-value=0.036 Score=52.55 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999986
No 321
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.74 E-value=0.038 Score=52.67 Aligned_cols=23 Identities=43% Similarity=0.437 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|+|++|.||||+|+.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 322
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.73 E-value=0.039 Score=52.44 Aligned_cols=24 Identities=42% Similarity=0.403 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|.|++|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.72 E-value=0.031 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.71 E-value=0.035 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 325
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.67 E-value=0.037 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999876
No 326
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.66 E-value=0.036 Score=52.78 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 327
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.62 E-value=0.039 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|+|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999886
No 328
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.61 E-value=0.036 Score=51.37 Aligned_cols=22 Identities=45% Similarity=0.700 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 329
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.59 E-value=0.026 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.58 E-value=0.034 Score=52.90 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999875
No 331
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.56 E-value=0.057 Score=54.43 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|.|.|++|+||||+|+.+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999976
No 332
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.53 E-value=0.04 Score=52.50 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 333
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.53 E-value=0.037 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|.|++|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 334
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.52 E-value=0.15 Score=54.75 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=41.3
Q ss_pred CCCchhHHHHHHHH-hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHH
Q 003950 141 GLDVPLQELKLELF-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 141 Gr~~~~~~l~~~L~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
|...-...|-+.+. =....++.|.|.+|+||||+|..++.+... . ...++|++.. -+..++...++..
T Consensus 179 gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~--~-g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 179 GVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--N-DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH--T-TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH--c-CCEEEEEECC--CCHHHHHHHHHHH
Confidence 33333444544442 112468999999999999999998874322 2 3346666654 3445556655544
No 335
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.49 E-value=0.04 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...|+|.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 336
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.49 E-value=0.041 Score=54.68 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 337
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.48 E-value=0.036 Score=53.69 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 338
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.47 E-value=0.039 Score=50.34 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++++|.|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 339
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.46 E-value=0.042 Score=56.06 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=29.4
Q ss_pred hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeC
Q 003950 155 KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVS 198 (784)
Q Consensus 155 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~ 198 (784)
-++.+||+|.|-|||||||.|-.+.. ... ....++.-+++.
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~--aLA-~~GkkVllID~D 85 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSA--AFS-ILGKRVLQIGCD 85 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH--HHH-HTTCCEEEEEES
T ss_pred CCCceEEEEECCCccCHHHHHHHHHH--HHH-HCCCeEEEEecC
Confidence 35689999999999999999887765 222 233357778875
No 340
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.45 E-value=0.037 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999886
No 341
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.42 E-value=0.031 Score=52.89 Aligned_cols=23 Identities=48% Similarity=0.767 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999876
No 342
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.42 E-value=0.031 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 343
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.39 E-value=0.037 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.37 E-value=0.042 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 345
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.34 E-value=0.078 Score=53.62 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=27.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEe
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 197 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~ 197 (784)
...+++|+|.+|+||||++..++. .... -..++.++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~--~~~~-~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKG-KGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH--HHHH-TTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHH-cCCeEEEecC
Confidence 357899999999999999999886 3332 2344656654
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.33 E-value=0.042 Score=50.30 Aligned_cols=21 Identities=24% Similarity=0.118 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|+|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 347
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.32 E-value=0.15 Score=55.44 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998885
No 348
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.32 E-value=0.053 Score=50.80 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=27.0
Q ss_pred hhHHHHHHHHhC-CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 145 PLQELKLELFKD-GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 145 ~~~~l~~~L~~~-~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-+..+..++..- ....+.|+|++|+||||+|.++++
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 355566655531 234799999999999999999987
No 349
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.28 E-value=0.044 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 350
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.26 E-value=0.13 Score=49.80 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=30.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccc---ccccCCceEEEEeCCCCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQV---LGKFKDNIFFVTVSQTPN 202 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~f~~~~~wv~~~~~~~ 202 (784)
-.+++|+|++|+|||||++.++..... ......+++|+.-.....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 479999999999999999998752111 112344577877654433
No 351
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.24 E-value=0.02 Score=59.01 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=33.8
Q ss_pred HHHHHHHh-CCcEEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCC
Q 003950 148 ELKLELFK-DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQT 200 (784)
Q Consensus 148 ~l~~~L~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~ 200 (784)
++++.+.. ..-+.++|+|.+|+|||+|+..+.+ .+.... +..++++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~--~i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIAN--GIAENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHH--HHHHHCTTSEEEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHH--HHhhcCCCeEEEEEEeccC
Confidence 45566652 3456889999999999999999887 333222 333445666554
No 352
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.21 E-value=0.045 Score=51.39 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|+.|+||||+|+.+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999886
No 353
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.20 E-value=0.045 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|+|+.|+|||||++.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999985
No 354
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.19 E-value=0.24 Score=53.45 Aligned_cols=68 Identities=10% Similarity=0.093 Sum_probs=42.6
Q ss_pred CCchhHHHHHHHHh-CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHH
Q 003950 142 LDVPLQELKLELFK-DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 142 r~~~~~~l~~~L~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
...-...|-..+.. ....++.|.|.+|+||||+|..++.+ +.......++|++.. .+..++...++..
T Consensus 183 i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 183 VRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred ccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 33334445444420 12468999999999999999998873 322223346677664 4566777776654
No 355
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.19 E-value=0.051 Score=55.41 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 467999999999999999999876
No 356
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.19 E-value=0.39 Score=49.24 Aligned_cols=52 Identities=10% Similarity=0.184 Sum_probs=36.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
..++.|.|.+|+||||+|..++.+... ....++|++. .-+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 468999999999999999998874222 2334666665 445677777776543
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.17 E-value=0.044 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|.|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.16 E-value=0.069 Score=52.37 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....+|+|.|++|+||||+|+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999976
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.13 E-value=0.046 Score=51.39 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 360
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.07 E-value=0.046 Score=52.12 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346999999999999999999886
No 361
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.04 E-value=0.2 Score=54.25 Aligned_cols=50 Identities=20% Similarity=0.393 Sum_probs=34.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVY 211 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~ 211 (784)
..++.|.|.+|+||||||..++.+ +.......++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEECCC--CHHHHHHHHH
Confidence 469999999999999999998873 3222233466777543 4566666654
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.03 E-value=0.035 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=16.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 363
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.00 E-value=0.096 Score=65.74 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=53.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC-----CCChHHHHHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPE-----FQTDEDAINDL 231 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l 231 (784)
..++|.|+|++|+|||+||.++... ... -..++.++++.+..+... ++.++.+... ....+.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~-~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQR-EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHT-TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHH-cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 3679999999999999999998773 222 234577888887776665 3444422111 11223333334
Q ss_pred HHHhcccCCCcEEEEEeCCC
Q 003950 232 ERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 232 ~~~~~~l~~kr~LlVlDdv~ 251 (784)
..+.+ +.+.-+||+|.+.
T Consensus 1498 ~~lvr--~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALAR--SGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHH--HTCCSEEEESCGG
T ss_pred HHHHh--cCCCCEEEEcChh
Confidence 43332 3567899999983
No 364
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.00 E-value=0.1 Score=48.82 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=64.6
Q ss_pred hccCCCCCCEEEeecCCCCC-----CCcccccCCCCCCEEeccCCCCCC----ccchhhhCCCCCCEEeccCCCCC----
Q 003950 664 GIGKLVNLQMLTLASCTDLS-----ALPDTIGNLSNLNFLDISECLNIQ----ELPERIGELCSLKTLCLKGCSMF---- 730 (784)
Q Consensus 664 ~l~~l~~L~~L~L~~~~~~~-----~~p~~~~~l~~L~~L~l~~n~~~~----~~p~~l~~l~~L~~L~l~~n~l~---- 730 (784)
.+.+-+.|++|+|++|+.++ .+...+..-+.|+.|+|++|.+.. .+...+..-++|++|+|++|.|+
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 34566889999998753333 244566777899999999997653 34455666789999999999998
Q ss_pred -CcChhhhCCCCCCEEeCCCC
Q 003950 731 -ELPSSILNLENLEVVKCDEE 750 (784)
Q Consensus 731 -~lp~~l~~l~~L~~L~l~~~ 750 (784)
.+-..+..-+.|+.|+++++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 34455666678999999754
No 365
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.97 E-value=0.05 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 366
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.89 E-value=0.061 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....+++|+|+.|.|||||++.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999999986
No 367
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.85 E-value=0.28 Score=53.93 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=37.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHK 214 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l 214 (784)
..++.|.|.+|+||||+|..++.+ ........++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 468999999999999999998873 3322233466777644 4667777766543
No 368
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.83 E-value=0.064 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 369
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.80 E-value=0.044 Score=52.77 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999886
No 370
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.80 E-value=0.054 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 371
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.74 E-value=0.058 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 372
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.72 E-value=0.16 Score=53.11 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=54.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHH--cCCCCCCCCChHHHHHHHHH
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH--KGYAVPEFQTDEDAINDLER 233 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~--l~~~~~~~~~~~~~~~~l~~ 233 (784)
....+++|+|+.|.||||+++.+.. .+.......++++.-.-......- ..+..+ ++.. .......+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~~------~~~~~~~l~~ 204 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGED------TKSFADALRA 204 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT------BSCSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecccHhhhhccC-ceEEEeeecCCC------HHHHHHHHHH
Confidence 4567999999999999999999876 222222343433331110000000 000000 1100 0111233444
Q ss_pred HhcccCCCcEEEEEeCCCCCchHHHhhhhccCCCceEEEeccc
Q 003950 234 LLKPIRPEAILLVLDDVWSGSESLLQKFKFQLPYYKILVTSRS 276 (784)
Q Consensus 234 ~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~iivTtR~ 276 (784)
.+ ...+=+|++|.+.+. +.+...+.....|..|+.|+-.
T Consensus 205 ~L---~~~pd~illdE~~d~-e~~~~~l~~~~~g~~vi~t~H~ 243 (372)
T 2ewv_A 205 AL---REDPDVIFVGEMRDL-ETVETALRAAETGHLVFGTLHT 243 (372)
T ss_dssp HT---TSCCSEEEESCCCSH-HHHHHHHHHHTTTCEEEECCCC
T ss_pred Hh---hhCcCEEEECCCCCH-HHHHHHHHHHhcCCEEEEEECc
Confidence 44 446668999999743 2233334444556667777754
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.71 E-value=0.057 Score=50.86 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 374
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.69 E-value=0.2 Score=43.43 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=31.7
Q ss_pred EEEccCCCCC-CCCchhccCCCCCCEEEeecCCCCCCCcccccCCCCCCEEeccCCCC
Q 003950 649 KLRITNCHKL-SALPEGIGKLVNLQMLTLASCTDLSALPDTIGNLSNLNFLDISECLN 705 (784)
Q Consensus 649 ~L~L~~~~~~-~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~n~~ 705 (784)
.++.+++.+. ..+|..+ ..+|++|+|++|.+...-+..+..+++|+.|+|++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666664432 1566533 24577777777655444445556666777777776654
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.68 E-value=0.057 Score=53.31 Aligned_cols=24 Identities=46% Similarity=0.592 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|+|+.|+||||+++.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 376
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.65 E-value=0.057 Score=51.91 Aligned_cols=24 Identities=42% Similarity=0.685 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999886
No 377
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.63 E-value=0.18 Score=43.80 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=31.9
Q ss_pred EEEEeCCCCC-CCCCcccCCCCCCcEEEccCCCCCCCCchhccCCCCCCEEEeecCCC
Q 003950 625 EIDIDYCNDL-IELPDGLCDIVSIKKLRITNCHKLSALPEGIGKLVNLQMLTLASCTD 681 (784)
Q Consensus 625 ~L~L~~~~~~-~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 681 (784)
.++.+++.++ ..+|..+. .+|++|+|++|.+...-+..+..+++|++|+|++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555433 25565432 3577777777664433334556677777777777654
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.61 E-value=0.065 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 379
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.60 E-value=0.059 Score=51.70 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 380
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.59 E-value=0.11 Score=52.90 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=30.5
Q ss_pred hCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCC
Q 003950 155 KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ 199 (784)
Q Consensus 155 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~ 199 (784)
....++|+|+|-||+||||+|..++. ..... ..+++.++...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~--~La~~-G~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA--AFSIL-GKRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH--HHHHT-TCCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH--HHHHC-CCeEEEEeCCC
Confidence 44678999999999999999998876 33322 34577888754
No 381
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.54 E-value=0.059 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 382
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.50 E-value=0.069 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|.|+|++|+||||+|+.+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 383
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.47 E-value=0.074 Score=54.21 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|.|..|+||||+|+.+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999875
No 384
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.46 E-value=0.061 Score=51.01 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 385
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.45 E-value=0.064 Score=51.48 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999876
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.39 E-value=0.097 Score=50.01 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.8
Q ss_pred hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 155 KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 155 ~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.....+|.|.|+.|+||||+|+.+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34467999999999999999999986
No 387
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.38 E-value=0.074 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999873
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.36 E-value=0.058 Score=52.08 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 389
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.34 E-value=0.17 Score=51.21 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=33.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHH
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQH 213 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~ 213 (784)
.-.+++|.|.+|+|||||++.++.. +...-...++|+.... ...++...+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 3469999999999999999998863 3222222366666432 344454444443
No 390
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.31 E-value=0.068 Score=54.23 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999999886
No 391
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.31 E-value=0.081 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 392
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.26 E-value=0.073 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.21 E-value=0.034 Score=53.28 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999876
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.16 E-value=0.058 Score=52.97 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 395
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.12 E-value=0.077 Score=54.27 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 396
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.04 E-value=0.13 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....|+|.|+.|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 397
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.94 E-value=0.07 Score=49.93 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+++|+|..|+|||||++.++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHh
Confidence 3689999999999999999876
No 398
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.94 E-value=0.08 Score=50.32 Aligned_cols=21 Identities=14% Similarity=0.618 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 399
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.91 E-value=0.083 Score=48.58 Aligned_cols=23 Identities=43% Similarity=0.510 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999886
No 400
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.88 E-value=0.046 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
++++|+|..|.|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 401
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.85 E-value=0.085 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||++.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999985
No 402
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.82 E-value=0.099 Score=58.92 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=35.4
Q ss_pred CCCCCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhc
Confidence 45799988888777666644 5899999999999999999987
No 403
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.82 E-value=0.083 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 47999999999999999998873
No 404
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.81 E-value=0.056 Score=52.58 Aligned_cols=23 Identities=48% Similarity=0.759 Sum_probs=16.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHh-c
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLC-K 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~-~ 180 (784)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 5
No 405
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.77 E-value=0.097 Score=53.39 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....+|+|+|..|.|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999886
No 406
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.75 E-value=0.085 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 407
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.71 E-value=0.11 Score=49.22 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=21.1
Q ss_pred CCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 142 LDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 142 r~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
++.-.+.+.+.......--|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3333444444444445567899999999999999988764
No 408
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.64 E-value=0.091 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+|+|.|++|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 409
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.59 E-value=0.095 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 410
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.58 E-value=0.09 Score=50.36 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999986
No 411
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.58 E-value=0.092 Score=50.71 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 412
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.55 E-value=0.082 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||++.+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 413
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.53 E-value=0.091 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 414
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.52 E-value=0.11 Score=52.72 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999999886
No 415
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.51 E-value=0.1 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|.|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999986
No 416
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.46 E-value=0.098 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+++|+|+.|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999986
No 417
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.39 E-value=0.1 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||++.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 418
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.35 E-value=0.15 Score=52.07 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=28.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEe
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTV 197 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~ 197 (784)
...+|+|+|.+|+||||++..++. .... -..++.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~--~l~~-~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN--YYAE-LGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH--HHHH-TTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHH-CCCeEEEEeC
Confidence 468999999999999999999886 3332 2445656654
No 419
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.31 E-value=0.13 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999863
No 420
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.29 E-value=0.17 Score=52.26 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=33.0
Q ss_pred HHhCCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCCceEEEEeCCC
Q 003950 153 LFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLG-KFKDNIFFVTVSQT 200 (784)
Q Consensus 153 L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~~wv~~~~~ 200 (784)
+.....+++.+.|.||+||||+|..++. .... .-..++..++....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSS
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCC
Confidence 3455678999999999999999998876 3331 23445777777543
No 421
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.28 E-value=0.11 Score=49.41 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|.|.|++|+||+|.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998886
No 422
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.28 E-value=0.1 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999875
No 423
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.24 E-value=0.14 Score=50.77 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....+++|+|+.|.|||||++.+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4567999999999999999999876
No 424
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.24 E-value=0.1 Score=51.63 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|+.|.|||||++.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 425
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.18 E-value=0.16 Score=52.86 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=27.2
Q ss_pred hHHHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 146 LQELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 146 ~~~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++.+.+. ..+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 344445554 45678999999999999999998875
No 426
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.16 E-value=0.064 Score=54.13 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=18.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 427
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.15 E-value=0.14 Score=50.04 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=31.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQK 209 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~ 209 (784)
..++.|.|.+|+||||||..++.. ... -..+++|++.... ..++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~-~~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLK-MGEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHH-TTCCEEEEESSSC--HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHh-cCCeEEEEEccCC--HHHHHHH
Confidence 468999999999999999887652 221 1334777775443 4444433
No 428
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.12 E-value=0.11 Score=50.58 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...|.|.|++|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 429
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.08 E-value=0.11 Score=48.33 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-|+|+|.+|+|||||+..+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999987
No 430
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.07 E-value=0.12 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|+.|.|||||++.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999999875
No 431
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.05 E-value=0.13 Score=47.97 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+.|.|.|++|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999876
No 432
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.05 E-value=0.18 Score=48.60 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=18.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...|.|.|+.|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 433
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.05 E-value=0.11 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999986
No 434
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.04 E-value=0.12 Score=50.60 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 435
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.01 E-value=0.26 Score=52.90 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=57.5
Q ss_pred HHHHHH-hCCcEEEEEEcCCCCcHHHHH-HHHhccccc----ccccCCceEEEEeCCCC-CHHHHHHHHHHHcCC-----
Q 003950 149 LKLELF-KDGRQVIVVSAPGGYGKTTLV-KKLCKDDQV----LGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGY----- 216 (784)
Q Consensus 149 l~~~L~-~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~----~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~----- 216 (784)
.++.|. -..-+.++|+|.+|+|||+|| ..+.+.... .++-+..++++-+++.. ...++.+.+...-..
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 445555 233467899999999999995 566663221 01234446688888765 455666666653110
Q ss_pred --CCCCCCChHH-----HHHHHHHHhcccCCCcEEEEEeCC
Q 003950 217 --AVPEFQTDED-----AINDLERLLKPIRPEAILLVLDDV 250 (784)
Q Consensus 217 --~~~~~~~~~~-----~~~~l~~~~~~l~~kr~LlVlDdv 250 (784)
...+.+.... ..-.+.+.+.. +++.+||++||+
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd-~G~dVLli~Dsl 271 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRD-NGKHALIIYDDL 271 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEETH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCcEEEEEcCH
Confidence 0011111111 11234444532 699999999998
No 436
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.01 E-value=0.12 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|.|.|+.|+||||||..++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 57899999999999999999986
No 437
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.98 E-value=0.099 Score=49.95 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||.+.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999875
No 438
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.98 E-value=0.12 Score=51.27 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|+.|.|||||++.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346899999999999999999986
No 439
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.97 E-value=0.12 Score=52.59 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 440
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.97 E-value=0.12 Score=51.17 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 441
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.90 E-value=0.12 Score=50.69 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||++.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 442
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.89 E-value=0.12 Score=48.48 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 443
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.86 E-value=0.12 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 444
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.85 E-value=0.14 Score=52.51 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....+++|+|+.|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999886
No 445
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.81 E-value=0.12 Score=50.73 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||++.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 446
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.78 E-value=0.34 Score=51.88 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=56.3
Q ss_pred HHHHHH-hCCcEEEEEEcCCCCcHHHHH-HHHhcccccccccCCceEEEEeCCCC-CHHHHHHHHHHHcCCC-------C
Q 003950 149 LKLELF-KDGRQVIVVSAPGGYGKTTLV-KKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA-------V 218 (784)
Q Consensus 149 l~~~L~-~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~ 218 (784)
.++.|. -..-+.++|.|.+|+|||+|| ..+.+.. +-+..++++-+++.. ...++.+.+...-... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 344444 233467899999999999996 5777632 233335677787765 4556666666531111 0
Q ss_pred CCCCChHH-----HHHHHHHHhcccCCCcEEEEEeCC
Q 003950 219 PEFQTDED-----AINDLERLLKPIRPEAILLVLDDV 250 (784)
Q Consensus 219 ~~~~~~~~-----~~~~l~~~~~~l~~kr~LlVlDdv 250 (784)
.+.+.... ..-.+.+.+.. +++.+||++||+
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd-~G~dVLl~~Dsl 263 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMY-KGKHALVVYDDL 263 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-cCCcEEEEEecH
Confidence 11111111 11234445533 699999999998
No 447
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.76 E-value=0.12 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|+.|.|||||.+.++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 448
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.69 E-value=0.29 Score=46.30 Aligned_cols=50 Identities=16% Similarity=0.353 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQ 212 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 212 (784)
+.|+|-|..|+||||+++.+.+ .....++ ++...-.......+.+++++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~--v~~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYD--VIMTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSC--EEEEESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCC--EEEeeCCCCChHHHHHHHHHh
Confidence 4689999999999999999987 4444443 333333322233344444443
No 449
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.67 E-value=0.35 Score=45.72 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=51.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPEFQTDEDAINDLERLLKP 237 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 237 (784)
..+..++|..|.||||.|.........+ .. +++.+..... ...-...+...++........... .++++.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~--kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~-----~~~~~~ 97 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA-KQ--HAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSAS-----KDIFKH 97 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TC--CEEEEECC-------------------CCEEECSSG-----GGGGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC-CC--EEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCH-----HHHHHH
Confidence 4788999999999999998777632222 22 2434442211 111112344444332211100000 133333
Q ss_pred cCCCcEEEEEeCCCCCchHHHhhhhc-cCCCceEEEecccc
Q 003950 238 IRPEAILLVLDDVWSGSESLLQKFKF-QLPYYKILVTSRSV 277 (784)
Q Consensus 238 l~~kr~LlVlDdv~~~~~~~~~~~~~-~~~gs~iivTtR~~ 277 (784)
+.++--+|++|.+..-...+++.+.. ...|-.||+|-++.
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQ 138 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSB
T ss_pred HhcCCCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEeccc
Confidence 34434499999986543332333322 22478999999864
No 450
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.63 E-value=0.13 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|+.|.|||||++.+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 451
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.62 E-value=0.15 Score=53.99 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=52.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc-cccCCceEEEEeCCCC-CHHHHHHHHHHH--cCC-----CCCCCCChHH--
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVL-GKFKDNIFFVTVSQTP-NVKGIVQKVYQH--KGY-----AVPEFQTDED-- 226 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~wv~~~~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~~-- 226 (784)
-+.++|.|.+|+|||+|+.++.+..... ++=+..++++-+++.. ...++.+.+.+. +.. ...+.+....
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 3457899999999999999998854331 1112235566676654 456666666543 110 0011111111
Q ss_pred ---HHHHHHHHhcccCCCcEEEEEeCCC
Q 003950 227 ---AINDLERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 227 ---~~~~l~~~~~~l~~kr~LlVlDdv~ 251 (784)
..-.+.+.+..-+++.+||++||+.
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1112333332224899999999983
No 452
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.59 E-value=0.13 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||++.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 453
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.59 E-value=0.37 Score=51.11 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=28.5
Q ss_pred CCCCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 140 PGLDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 140 vGr~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+|.......+...+......+++|+|+.|.||||+.+.+..
T Consensus 149 Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHh
Confidence 34443333333333445567999999999999999999886
No 454
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.58 E-value=0.13 Score=54.34 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=53.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc--------cccCCceEEEEeCCCC-CHHHHHHHHHHH--cC-----CCCCCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVL--------GKFKDNIFFVTVSQTP-NVKGIVQKVYQH--KG-----YAVPEF 221 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~~~~~wv~~~~~~-~~~~~~~~i~~~--l~-----~~~~~~ 221 (784)
-+.++|.|.+|+|||+|+..+.+..... ++=+..++++-+++.. ...++.+.+.+. +. ....+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 4567899999999999999998854331 1122235567777654 455666665542 11 011111
Q ss_pred CChHHH-----HHHHHHHhcccCCCcEEEEEeCCC
Q 003950 222 QTDEDA-----INDLERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 222 ~~~~~~-----~~~l~~~~~~l~~kr~LlVlDdv~ 251 (784)
+..... .-.+.+.+..-+++.+||++||+.
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111111 122333332224899999999983
No 455
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.57 E-value=0.13 Score=51.16 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|+.|.|||||++.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 456
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.53 E-value=0.15 Score=52.84 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+++|+|..|+||||+++.++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 57999999999999999999886
No 457
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.53 E-value=0.14 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999986
No 458
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.52 E-value=0.13 Score=54.79 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 156 DGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 156 ~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999986
No 459
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.49 E-value=0.076 Score=59.48 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=30.6
Q ss_pred CCCCCCCchhHHHHHHHHhCCcE-----------EEEEEcCCCCcHHHHHHHHhc
Q 003950 137 PVTPGLDVPLQELKLELFKDGRQ-----------VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~-----------vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.++|.+..+..+...|..+..+ -|.++|.+|+|||+||+.+++
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSST
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHH
Confidence 45677776555544333333212 589999999999999999986
No 460
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.42 E-value=0.33 Score=52.04 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=56.3
Q ss_pred HHHHHH-hCCcEEEEEEcCCCCcHHHHH-HHHhcccccccccCCceEEEEeCCCC-CHHHHHHHHHHHcCC-------CC
Q 003950 149 LKLELF-KDGRQVIVVSAPGGYGKTTLV-KKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGY-------AV 218 (784)
Q Consensus 149 l~~~L~-~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~ 218 (784)
.++.|. -..-+.++|+|.+|+|||+|| ..+.+.. .-+..++++-+++.. ...++.+.+...-.. ..
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 445554 233467999999999999996 5777632 233335677787765 455666666552110 11
Q ss_pred CCCCChHH-----HHHHHHHHhcccCCCcEEEEEeCC
Q 003950 219 PEFQTDED-----AINDLERLLKPIRPEAILLVLDDV 250 (784)
Q Consensus 219 ~~~~~~~~-----~~~~l~~~~~~l~~kr~LlVlDdv 250 (784)
.+.+.... ..-.+.+.+.. +++.+||++||+
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd-~G~dVLli~Dsl 276 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAY-SGRDALVVYDDL 276 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEETH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-cCCcEEEEeccH
Confidence 11111111 11234444522 699999999998
No 461
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.37 E-value=0.13 Score=48.42 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
-.|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 462
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.36 E-value=0.14 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||++.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999875
No 463
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.34 E-value=0.14 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|.|+.|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999999886
No 464
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.33 E-value=0.16 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..++.+.|.||+||||++..+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHH
Confidence 57899999999999999999885
No 465
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.30 E-value=0.14 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||++.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999986
No 466
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.29 E-value=0.14 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||.+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 467
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.29 E-value=0.17 Score=45.53 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998864
No 468
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.19 E-value=0.25 Score=46.04 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
...|+|+|.+|+|||||+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998864
No 469
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.19 E-value=0.15 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 457999999999999999999875
No 470
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.17 E-value=0.25 Score=49.74 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=28.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ 199 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~ 199 (784)
.++|+|.|-||+||||+|..++. ..... ..++..++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~--~La~~-G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA--ALAEM-GKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH--HHHHT-TCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH--HHHHC-CCeEEEEecCC
Confidence 46888899999999999998876 33322 34577787753
No 471
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.12 E-value=0.38 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.+.|.|.+|+||||++..+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999999998887
No 472
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.07 E-value=0.19 Score=46.69 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999999874
No 473
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.07 E-value=0.42 Score=51.05 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=56.9
Q ss_pred HHHHHH-hCCcEEEEEEcCCCCcHHHHH-HHHhcccccccccCCceEEEEeCCCC-CHHHHHHHHHHHcCCC-------C
Q 003950 149 LKLELF-KDGRQVIVVSAPGGYGKTTLV-KKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHKGYA-------V 218 (784)
Q Consensus 149 l~~~L~-~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~ 218 (784)
.++.|. -..-+.++|.|..|+|||+|| ..+.+. .+-+..++++-+++.. ...++.+.+.+.-... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 345554 233467899999999999996 567662 2334435688888765 4566667665531111 0
Q ss_pred CCCCChHH-----HHHHHHHHhcccCCCcEEEEEeCCC
Q 003950 219 PEFQTDED-----AINDLERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 219 ~~~~~~~~-----~~~~l~~~~~~l~~kr~LlVlDdv~ 251 (784)
.+.+.... ..-.+.+.+.. +++.+||++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd-~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRD-RGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH-TTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHh-cCCCEEEEecChH
Confidence 11111111 11233344422 6999999999983
No 474
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.03 E-value=0.59 Score=45.40 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=24.5
Q ss_pred CCchhHHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 142 LDVPLQELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 142 r~~~~~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
|+.+.+.+..++. .+ -+.|+|..|.|||.+|..+..
T Consensus 95 ~~~Q~~ai~~~~~-~~--~~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 95 RDYQEKALERWLV-DK--RGCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp CHHHHHHHHHHTT-TS--EEEEEESSSTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh-CC--CEEEEeCCCCCHHHHHHHHHH
Confidence 4444444444433 22 378899999999999988776
No 475
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.01 E-value=0.47 Score=59.74 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=59.4
Q ss_pred CchhHHHHHHHHhC---CcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC
Q 003950 143 DVPLQELKLELFKD---GRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVP 219 (784)
Q Consensus 143 ~~~~~~l~~~L~~~---~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 219 (784)
..-...|-..|..+ ..+++.|+|.+|+||||||.+++.. .... ...++|++.....+... ++.++....
T Consensus 365 ~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~--~a~~-G~~vlyis~E~s~~~~~-----a~~lGvd~~ 436 (2050)
T 3cmu_A 365 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQRE-GKTCAFIDAEHALDPIY-----ARKLGVDID 436 (2050)
T ss_dssp CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTT-TCCEEEECTTSCCCHHH-----HHHTTCCTT
T ss_pred eCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH--HHhc-CCeEEEEEcCCCHHHHH-----HHHcCCCHH
Confidence 33344554444312 3579999999999999999998873 3222 23477888877766542 455554321
Q ss_pred C-----CCChHHHHHHHHHHhcccCCCcEEEEEeCCC
Q 003950 220 E-----FQTDEDAINDLERLLKPIRPEAILLVLDDVW 251 (784)
Q Consensus 220 ~-----~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~ 251 (784)
. ..+.++..+.+..+.+ ..+.-+||+|.+.
T Consensus 437 ~L~I~~~~~~e~il~~~~~lv~--~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 437 NLLCSQPDTGEQALEICDALAR--SGAVDVIVVDSVA 471 (2050)
T ss_dssp TCEEECCSSHHHHHHHHHHHHH--HTCCSEEEESCGG
T ss_pred HeEEeCCCCHHHHHHHHHHHHH--hcCCcEEEECCHH
Confidence 1 1233444444444332 3456699999873
No 476
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.01 E-value=0.83 Score=53.56 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=59.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccC----CceEEEEeCCCC-------CH-----------HHHHHHHHHHcC
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFK----DNIFFVTVSQTP-------NV-----------KGIVQKVYQHKG 215 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~~wv~~~~~~-------~~-----------~~~~~~i~~~l~ 215 (784)
..+++|+|..|.|||||++.+..- .+. .++ .++ +.+.+.. +. .+....+++.++
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~--~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg 536 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRT--VYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG 536 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCE--EETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeE--EEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 468999999999999999999841 121 111 112 2222211 11 222344555555
Q ss_pred CCC----CCCCChHHHHHHHHHHhcccCCCcEEEEEeCCCCCc-----hHHHhhhhccCCCceEEEecccc
Q 003950 216 YAV----PEFQTDEDAINDLERLLKPIRPEAILLVLDDVWSGS-----ESLLQKFKFQLPYYKILVTSRSV 277 (784)
Q Consensus 216 ~~~----~~~~~~~~~~~~l~~~~~~l~~kr~LlVlDdv~~~~-----~~~~~~~~~~~~gs~iivTtR~~ 277 (784)
... ........+..+.-.+...+-.++=+|+||.--+.- .++...+.. .|..||++|.+.
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl 605 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDS 605 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCH
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 421 000111122222222223345677899999875443 234455544 466777777764
No 477
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.00 E-value=0.43 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...|.|.|+.|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 478
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.99 E-value=0.28 Score=48.76 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCC
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQ 199 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~ 199 (784)
++|+|.|-||+||||+|..++. ..... ..++..++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~-G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAM-GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTT-TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHC-CCcEEEEcCCC
Confidence 5788899999999999998876 33322 34577887753
No 479
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.92 E-value=0.22 Score=52.60 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=25.8
Q ss_pred HHHHHHH--hCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 148 ELKLELF--KDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 148 ~l~~~L~--~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.+.+.|. .....+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 4444444 23567999999999999999999986
No 480
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.85 E-value=0.15 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.++.|+|.+|+||||||..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999999875
No 481
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.83 E-value=0.18 Score=49.14 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999886
No 482
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.83 E-value=0.19 Score=54.07 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
..+++|+|..|+|||||++.+..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 57999999999999999999886
No 483
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.75 E-value=0.18 Score=49.17 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...|+|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 484
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.75 E-value=0.28 Score=48.15 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...|.++|++|+|||.+|.++++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999987
No 485
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.70 E-value=0.36 Score=49.53 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=33.1
Q ss_pred HHHhCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCC
Q 003950 152 ELFKDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTP 201 (784)
Q Consensus 152 ~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~ 201 (784)
.+.....+++.+.|-||+||||+|..++. ..... ..+++.++.....
T Consensus 10 ~l~~~~~~i~~~sgkGGvGKTt~a~~lA~--~la~~-g~~vllid~D~~~ 56 (334)
T 3iqw_A 10 ILDQRSLRWIFVGGKGGVGKTTTSCSLAI--QLAKV-RRSVLLLSTDPAH 56 (334)
T ss_dssp HHHCTTCCEEEEECSTTSSHHHHHHHHHH--HHTTS-SSCEEEEECCSSC
T ss_pred HhcCCCeEEEEEeCCCCccHHHHHHHHHH--HHHhC-CCcEEEEECCCCC
Confidence 34455578889999999999999998876 33322 3457777775443
No 486
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.67 E-value=0.25 Score=53.69 Aligned_cols=41 Identities=12% Similarity=-0.044 Sum_probs=29.2
Q ss_pred CCCCchhHHHHHHH--HhCCcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 140 PGLDVPLQELKLEL--FKDGRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 140 vGr~~~~~~l~~~L--~~~~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
+.|.+-.+.+.+.. ......+|.+.|++|+||||+|+.+..
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHH
Confidence 55544444444433 123457899999999999999999997
No 487
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.66 E-value=0.18 Score=52.76 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
...+++|+|++|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999986
No 488
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.61 E-value=0.41 Score=59.45 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=58.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC-----CCChHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQHKGYAVPE-----FQTDEDAINDLE 232 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 232 (784)
-++|-|+|+.|+||||||.++.. +.... ...++|+++.+..++.- ++.++..... ....++....+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a--~~~~~-g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIA--AAQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHHHT-TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHhc-CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 47999999999999999999886 33333 34477999887777664 6666654322 223455566666
Q ss_pred HHhcccCCCcEEEEEeCC
Q 003950 233 RLLKPIRPEAILLVLDDV 250 (784)
Q Consensus 233 ~~~~~l~~kr~LlVlDdv 250 (784)
.+++ .+..-+||+|-|
T Consensus 1503 ~~~~--s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALAR--SGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHH--HTCCSEEEESCS
T ss_pred HHHH--cCCCCEEEEccH
Confidence 5554 466779999987
No 489
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.58 E-value=0.21 Score=48.94 Aligned_cols=49 Identities=16% Similarity=0.340 Sum_probs=31.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHH
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKV 210 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i 210 (784)
..++.|.|.+|+|||++|.+++.+. .. .....+++++.. .+...+.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~-~~~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AE-EYGEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HH-HHCCCEEEEESS--SCHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HH-hcCCCceeeccc--CCHHHHHHHH
Confidence 4689999999999999998876421 11 222235566654 3455555444
No 490
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.57 E-value=0.21 Score=53.20 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=40.6
Q ss_pred HHHHHH-hCCcEEEEEEcCCCCcHHHHHHHHhccccccccc-CCceEEEEeCCCC-CHHHHHHHHHHH
Q 003950 149 LKLELF-KDGRQVIVVSAPGGYGKTTLVKKLCKDDQVLGKF-KDNIFFVTVSQTP-NVKGIVQKVYQH 213 (784)
Q Consensus 149 l~~~L~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~~~~~~-~~~~~~~~i~~~ 213 (784)
.++.|. -..-+.++|.|.+|+|||+|+..++++....+.- +..++++-+++.. ...++.+.+...
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~ 209 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKT 209 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhc
Confidence 334444 2234568889999999999999998854332211 1235567776654 456666666653
No 491
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.56 E-value=0.26 Score=45.15 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 157 GRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 157 ~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998764
No 492
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.54 E-value=0.17 Score=50.29 Aligned_cols=21 Identities=48% Similarity=0.661 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~ 180 (784)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999886
No 493
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.50 E-value=0.18 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
-.+++|+|+.|.|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 494
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.48 E-value=0.17 Score=45.54 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 003950 160 VIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999764
No 495
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.43 E-value=0.18 Score=46.02 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 158 RQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
.--|+|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998764
No 496
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.40 E-value=0.18 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
--|.|+|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999998764
No 497
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.35 E-value=0.19 Score=52.56 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003950 159 QVIVVSAPGGYGKTTLVKKLCK 180 (784)
Q Consensus 159 ~vv~I~G~~GiGKTtLa~~v~~ 180 (784)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999886
No 498
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.25 E-value=0.44 Score=44.75 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 003950 160 VIVVSAPGGYGKTTLVKKLCKDDQVLGKFKDNIFFVTVSQTPNVKGIVQKVYQ 212 (784)
Q Consensus 160 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~~~~~~~~~~~~~~i~~ 212 (784)
.|+|-|.-|+||||.++.+++ .....-.. +....-+......+.++.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~-v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKK-VILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCC-EEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCc-EEEEECCCCCcHHHHHHHHhh
Confidence 378899999999999999987 44333222 334443333334445555543
No 499
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.22 E-value=0.37 Score=44.63 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 003950 147 QELKLELFKDGRQVIVVSAPGGYGKTTLVKKLCKD 181 (784)
Q Consensus 147 ~~l~~~L~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 181 (784)
..+.+ +.....-.|+|+|.+|+|||||..++...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34455 44555678999999999999999999853
No 500
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.18 E-value=0.39 Score=51.43 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=52.0
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHhcccccccccCCceEEEEeCCCC-CHHHHHHHHHHHc--C------CCCCCCCC----
Q 003950 158 RQVIVVSAPGGYGKTTLV-KKLCKDDQVLGKFKDNIFFVTVSQTP-NVKGIVQKVYQHK--G------YAVPEFQT---- 223 (784)
Q Consensus 158 ~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~~wv~~~~~~-~~~~~~~~i~~~l--~------~~~~~~~~---- 223 (784)
-+.++|.|.+|+|||+|| ..+.+.. .-+..++++-+++.. ...++.+.+...- . ....+...
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 467899999999999996 5777732 234345677887764 3445555554321 0 01111111
Q ss_pred hHHHHHHHHHHhcccCCCcEEEEEeCC
Q 003950 224 DEDAINDLERLLKPIRPEAILLVLDDV 250 (784)
Q Consensus 224 ~~~~~~~l~~~~~~l~~kr~LlVlDdv 250 (784)
.....-.+.+.+.. +++.+||++||+
T Consensus 239 a~~~a~tiAEyfrd-~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY-RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH-cCCcEEEEEecH
Confidence 11122334445522 699999999998
Done!