BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003951
(784 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 85/169 (50%), Gaps = 5/169 (2%)
Query: 304 SRTRNFRETVRAVSEFATRNHLPPHIHDQMLSHICLKFKTEGLKQQETLVGLPKAIRSSI 363
S +R +RE ++ V E+ LP H+ +++L + +++ + ++ + ++IR +
Sbjct: 5 SSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDV 64
Query: 364 AHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVD 423
A+Y +V +V F G +F+ ++V+ ++ E F P + VI + ++ + G VD
Sbjct: 65 ANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVD 124
Query: 424 LIHYVDGQDKVLGKAVA-GDAFGEIGVLYYRPQPFTVRTTELSQILRLS 471
+I D V+ +++ G FGEI +L + +V+ + LS
Sbjct: 125 IIM----SDGVIATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLS 169
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K +DG T L+ A + GH+E+V+VLL+ G + N D G++P A + + + ++
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 633 LL 634
LL
Sbjct: 87 LL 88
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K +DG T L+ A + GH+E+V+VLL+ G + N D G++P A + + + ++
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 119
Query: 633 LL 634
LL
Sbjct: 120 LL 121
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+K +DG T L+ A + GH+E+V+VLL+ G + N D G +P
Sbjct: 93 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K +DG T L+ A + GH+E+V+VLL+ G + N D G++P A + + + ++
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 633 LL 634
LL
Sbjct: 87 LL 88
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K +DG T L+ A + GH+E+V+VLL+ G + N D G++P A + + + ++
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 119
Query: 633 LL 634
LL
Sbjct: 120 LL 121
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+K +DG T L+ A + GH+E+V+VLL+ G + N D G +P
Sbjct: 93 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K +DG T L+ A + GH+E+V+VLL+ G + N D G++P A + + + ++
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 633 LL 634
LL
Sbjct: 99 LL 100
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K +DG T L+ A + GH+E+V+VLL+ G + N D G++P A + + + ++
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 131
Query: 633 LL 634
LL
Sbjct: 132 LL 133
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+K +DG T L+ A + GH+E+V+VLL+ G + N D G
Sbjct: 105 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 146
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ DG+T L+ A + GH E+VK+L+ G + N D+ G +P A + ++ + L
Sbjct: 29 DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 88
Query: 633 LLS---------YENRTPDEHKVEIMGPEISDNIW------NTRRKHRRHEWPDVSKSHS 677
L+S + RTP H E E+ + NT R D+++ H
Sbjct: 89 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL-DLAREHG 147
Query: 678 KRESIKL 684
E +KL
Sbjct: 148 NEEVVKL 154
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K DG+T L+ A + GH E+VK+L+ G + N D+ G +P A + N + L
Sbjct: 95 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 633 L 633
L
Sbjct: 155 L 155
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGG 604
DVN+ DG+T L+ A + G+ E+VK+L + G
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ DG+T L+ A + GH E+VK+LL G + N D+ G +P A + ++ + L
Sbjct: 29 DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 88
Query: 633 LLS 635
LLS
Sbjct: 89 LLS 91
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
D N+K DG+T L+ A + GH E+VK+LL G + N D+ G +P A + ++ + L
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 633 LLS 635
LLS
Sbjct: 122 LLS 124
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
D N+K DG+T L+ A + GH E+VK+LL G + N D+ G +P A + N + L
Sbjct: 95 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 633 L 633
L
Sbjct: 155 L 155
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K ++G+T L+ A + GH+E+VK+LLE G + N D G +P A + + + L
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 633 LL 634
LL
Sbjct: 87 LL 88
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K ++G+T L+ A + GH+E+VK+LLE G + N D G +P A + + + L
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 633 LL 634
LL
Sbjct: 120 LL 121
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 26/32 (81%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGG 604
DVN+K ++G+T L+ A + GH+E+VK+LLE G
Sbjct: 93 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 580 DGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLL 634
+G+T L+ A + GH+E+VK+LLE G + N D G +P A + + + LLL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K ++G+T L+ A + GH+E+VK+LLE G + N D G +P A + + + L
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 633 LL 634
LL
Sbjct: 87 LL 88
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 26/32 (81%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGG 604
DVN+K ++G+T L+ A + GH+E+VK+LLE G
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 580 DGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLL 634
+G+T L+ A + GH+E+VK+LLE G + N D G +P A + + + LLL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K DG+T L+ A + GH E+VK+L+ G + N D+ G +P A + ++ + L
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 633 LLS 635
L+S
Sbjct: 122 LIS 124
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K DG+T L+ A + GH E+VK+L+ G + N D+ G +P A + N + L
Sbjct: 95 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 633 L 633
L
Sbjct: 155 L 155
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ DG+T L+ A + GH E+VK+L+ G + N D+ G +P A + ++ + L
Sbjct: 29 DVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 88
Query: 633 LLS---------YENRTP------DEHKVEIMGPEISDNI-WNTRRKHRRHEWPDVSKSH 676
L+S + RTP + HK EI+ IS NT R D+++ H
Sbjct: 89 LISKGADVNAKDSDGRTPLHYAAKEGHK-EIVKLLISKGADVNTSDSDGRTPL-DLAREH 146
Query: 677 SKRESIKL 684
E +KL
Sbjct: 147 GNEEIVKL 154
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGG 604
DVN+ DG+T L+ A + G+ E+VK+L + G
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
D N+K DG+T L+ A + GH E+VK+LL G + N D+ G +P A + ++ + L
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 633 LLS 635
LLS
Sbjct: 122 LLS 124
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
D N+ DG+T L+ A + GH E+VK+LL G + N D+ G +P A + ++ + L
Sbjct: 29 DPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 88
Query: 633 LLS---------YENRTPDEHKVEIMGPEISDNIW------NTRRKHRRHEWPDVSKSHS 677
LLS + RTP + E EI + NT R D+++ H
Sbjct: 89 LLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPL-DLAREHG 147
Query: 678 KRESIKL 684
E +KL
Sbjct: 148 NEEIVKL 154
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
D N+K DG+T L+ A + GH E+VK+LL G + N D+ G +P A + N + L
Sbjct: 95 DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 633 L 633
L
Sbjct: 155 L 155
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 588 ANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLS---------YEN 638
A + G+ + VK LLE G + N D+ G +P A + ++ + LLLS +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 639 RTPDEHKVE 647
RTP + E
Sbjct: 71 RTPLHYAAE 79
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 371 IVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVD 429
I+ +FQGV + L+ DM+ FP + + E LYI+ SG V L H D
Sbjct: 27 ILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPD 86
Query: 430 GQDKVLGKAVAGDAFGEIGVLYYRPQPFT 458
G++ +L D FGE+ + + P P T
Sbjct: 87 GRENLLTIMGPSDMFGELSI--FDPGPRT 113
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ + G T L+ A RGH+E+V+VLL+ G + N D +G++P A + + + ++
Sbjct: 72 DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 633 LLSY 636
LL Y
Sbjct: 132 LLKY 135
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ G T L+ GH+E+++VLL+ + N D GW+P A + + ++
Sbjct: 39 DVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEV 98
Query: 633 LLSY 636
LL Y
Sbjct: 99 LLKY 102
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ G T L+ A + GH+E+V+VLL+ G + N D G
Sbjct: 105 DVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFG 146
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K G T L+ A +RGH+E+V+VLL+ G + N D+ G++P A + + + ++
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 633 LL 634
LL
Sbjct: 132 LL 133
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN++ G T L+ A GH+E+V+VLL+ G + N D+ G +P A + + + ++
Sbjct: 39 DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 633 LL 634
LL
Sbjct: 99 LL 100
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ G T L+ A +RGH+E+V+VLL+ G + N D G
Sbjct: 105 DVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%)
Query: 373 QNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQD 432
+++ LF+ + + L Q++ M + E VI Q + + Y++ G D++ D Q
Sbjct: 41 KDILLFKNLDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQT 100
Query: 433 KVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQAN 482
+ +G+ +FGE+ ++Y P+ T+ T + L R + I N
Sbjct: 101 RSVGQYDNRGSFGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKN 150
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 367 LFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI- 425
+F +++V LF+ + ++V + + + E +I Q E YI+ SG V ++
Sbjct: 157 MFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSILI 216
Query: 426 -------HYVDGQDKVLGKAVAGDAFGEIGVLYYRPQ 455
Q+ + G FGE+ ++ +P+
Sbjct: 217 RSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPR 253
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ + G T L+ A GH E+V+VLL+ G + N D GW+P A + + ++
Sbjct: 39 DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEV 98
Query: 633 LLSY 636
LL Y
Sbjct: 99 LLKY 102
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN++ DG T L+ A GH+E+V+VLL+ G + N DA G +P A + + ++
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 633 LLSY 636
LL +
Sbjct: 132 LLKH 135
Score = 37.0 bits (84), Expect = 0.047, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN++ G T L+ A RGH+E+V+VLL+ G + N D G
Sbjct: 105 DVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFG 146
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+K E G T L A GH+E+V+VLL+ G + N DA G++P
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP 83
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 373 QNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQD 432
+++ LF+ + + + Q++ M + E VI Q + + Y++ G D+ DG
Sbjct: 41 KDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG 100
Query: 433 KVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNN 492
+ +G +FGE+ ++Y P+ T+ T + L R + RI++ N
Sbjct: 101 RCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFR----------RIIVKN 150
Query: 493 LFRKLKDQES 502
+K K ES
Sbjct: 151 NAKKRKMYES 160
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ + G T L+ A +RGH+E+V+VLL+ G + N D+ G +P A + + ++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEV 98
Query: 633 LLSY 636
LL Y
Sbjct: 99 LLEY 102
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ G+T L+ A GH+E+V+VLLE G + N D G
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 371 IVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYV-D 429
I+ +FQGV + L + FP V + E LYI++SG V + D
Sbjct: 29 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 88
Query: 430 GQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLS 471
G++ +L D FGE+ + + P P T T ++++ +S
Sbjct: 89 GRENLLTIXGPSDMFGELSI--FDPGPRTSSATTITEVRAVS 128
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 50/110 (45%)
Query: 373 QNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQD 432
+++ LF+ + + + Q++ M + E VI Q + + Y++ G D+ DG
Sbjct: 47 KDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG 106
Query: 433 KVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQAN 482
+ +G +FGE+ ++Y P+ T+ T + L R + I N
Sbjct: 107 RCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKN 156
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 373 QNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQD 432
+++ LF+ + + + Q++ M + E VI Q + + Y++ G D+ DG
Sbjct: 148 KDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG 207
Query: 433 KVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNN 492
+ +G +FGE+ ++Y P+ T+ T + L R + RI++ N
Sbjct: 208 RCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFR----------RIIVKN 257
Query: 493 LFRKLKDQES 502
+K K ES
Sbjct: 258 NAKKRKMYES 267
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 373 QNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQD 432
+++ LF+ + + + Q++ M + E VI Q + + Y++ G D+ DG
Sbjct: 148 KDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG 207
Query: 433 KVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNN 492
+ +G +FGE+ ++Y P+ T+ T + L R + RI++ N
Sbjct: 208 RCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFR----------RIIVKN 257
Query: 493 LFRKLKDQES 502
+K K ES
Sbjct: 258 NAKKRKMYES 267
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 371 IVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYV-D 429
I+ +FQGV + L + FP V + E LYI++SG V + D
Sbjct: 29 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 88
Query: 430 GQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLS 471
G++ +L D FGE+ + + P P T T ++++ +S
Sbjct: 89 GRENLLTIMGPSDMFGELSI--FDPGPRTSSATTITEVRAVS 128
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ EDG T L+ A Q GH+E+V+VLL+ G + N D G +P
Sbjct: 39 DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITP 83
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN++ G T L+ A RGH+E+V+VLL+ G + N D G
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFG 113
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ + G T L+ A +RGH+E+V+VLL+ G + N D G +P A + + ++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEV 98
Query: 633 LLSY 636
LL Y
Sbjct: 99 LLEY 102
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ G+T L+ A GH+E+V+VLLE G + N D G
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 543 MWETRNLNF-LGPQATDIEASKDQDSTACPVDVNSKVEDGQTELNAANQRGHIEMVKVLL 601
MW +++ N L A + A + + + DVN++ +DG T L+ A + GH E+VK+LL
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 602 EGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLL 633
G + N G +P+ A++ + + LL
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ DG T L+ A GH+E+V+VLL+ G + N D G +P A + + ++
Sbjct: 39 DVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEV 98
Query: 633 LLSY 636
LL +
Sbjct: 99 LLKH 102
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ DG T L+ A + GH+E+V+VLL+ G + N D G
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFG 146
Score = 36.2 bits (82), Expect = 0.079, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ G T L+ A GH+E+V+VLL+ G + N D G +P A + + + ++
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 633 LLSY 636
LL +
Sbjct: 132 LLKH 135
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 373 QNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQD 432
+++ LF+ + + + Q++ M + E VI Q + + Y++ G D+ DG
Sbjct: 37 KDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG 96
Query: 433 KVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNN 492
+ +G +FGE+ ++Y P+ T+ T + L R + RI++ N
Sbjct: 97 RCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFR----------RIIVKN 146
Query: 493 LFRKLKDQES 502
+K K ES
Sbjct: 147 NAKKRKMYES 156
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 371 IVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYV-D 429
I+ +FQGV + L + FP V + E LYI++SG V + D
Sbjct: 5 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 64
Query: 430 GQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLS 471
G++ +L D FGE+ + + P P T T ++++ +S
Sbjct: 65 GRENLLTIMGPSDMFGELSI--FDPGPRTSSATTITEVRAVS 104
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 371 IVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYV-D 429
I+ +FQGV + L + FP V + E LYI++SG V + D
Sbjct: 7 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 66
Query: 430 GQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLS 471
G++ +L D FGE+ + + P P T T ++++ +S
Sbjct: 67 GRENLLTIMGPSDMFGELSI--FDPGPRTSSATTITEVRAVS 106
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 371 IVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYV-D 429
I+ +FQGV + L + FP V + E LYI++SG V + D
Sbjct: 4 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 63
Query: 430 GQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLS 471
G++ +L D FGE+ + + P P T T ++++ +S
Sbjct: 64 GRENLLTIMGPSDMFGELSI--FDPGPRTSSATTITEVRAVS 103
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ G T L+ A +RGH+E+V+VLL+ G + N D G +P A + + ++
Sbjct: 72 DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEV 131
Query: 633 LLSY 636
LL Y
Sbjct: 132 LLKY 135
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN++ G T L+ A + GH+E+V+VLL+ G + N D G +P A + + + ++
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEV 98
Query: 633 LLSY 636
LL Y
Sbjct: 99 LLKY 102
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ G T L+ A GH+E+V+VLL+ G + N D G
Sbjct: 105 DVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+K +DG T L+ A + GH+E+V+VLL+ G + N D G
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ + G T L+ A GH+E+V+VLL+ G + N D G++P A + + ++
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 633 LLSY 636
LL Y
Sbjct: 132 LLKY 135
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN++ + G+T L+ A +GH+E+V+VLL+ G + N D G +P
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTP 83
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ G T L+ A GH+E+V+VLL+ G + N D G
Sbjct: 105 DVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ + G T L+ A +RGH+E+V+VLL+ G + N D G +P A + + ++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEV 98
Query: 633 LLSY 636
LL Y
Sbjct: 99 LLEY 102
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN++ G+T L+ A GH+E+V+VLLE G + N D G
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+K + G + L+ A Q+GH ++V +LL+ G + N+ + G +P A A++ S+ D+
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDV 395
Query: 633 LLSYENRT-----PDEHKVEIMGPEISDNIWN 659
L + T D+H++ PE D I +
Sbjct: 396 LKVVTDETSFVLVSDKHRMSF--PETVDEILD 425
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 574 VNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
VN+K +D QT L+ A + GH MVK+LLE N N G +P
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 116
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 575 NSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLL 634
N++ G T L+ A Q GH EMV +LL NGN + G +P Q + + D+L+
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 635 SY 636
+
Sbjct: 299 KH 300
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 572 VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYD 631
V V++ G T L+ A+ G+I++VK LL+ + N G+SP A Q + +
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 361
Query: 632 LLLSYENRTPDE 643
LLL +P+E
Sbjct: 362 LLLK-NGASPNE 372
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ G T L+ A GH+E+V+VLL+ G + N D GW+P
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTP 108
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ ++G T L+ A G +E+V+VLL+ G + N D+ G +P
Sbjct: 31 DVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITP 75
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ G T L+ A G +E+V+VLL+ G + N DA G
Sbjct: 97 DVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALG 138
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ G T L+ A RGH+E+V+VLL+ G + N D G++P
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTP 116
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ G T L+ A GH+E+V+VLL+ G + N D+ G +P
Sbjct: 39 DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTP 83
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ +G T L+ A GH+E+V+VLL+ G + N D G
Sbjct: 105 DVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 213 GCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPR 272
G F I + YPDP + I +V+ A++W++ T TT GYGD+ P
Sbjct: 159 GAFAIYIVE-YPDPNSS-IKSVF-------------DALWWAVVTATTVGYGDVVPATPI 203
Query: 273 EMLFDIFYMLFNLGLTSYIIGNMTNL 298
+ I ML + + +IG ++N+
Sbjct: 204 GKVIGIAVMLTGISALTLLIGTVSNM 229
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 213 GCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPR 272
G F I + YPDP + I +V+ A++W++ T TT GYGD+ P
Sbjct: 147 GAFAIYIVE-YPDPNSS-IKSVF-------------DALWWAVVTATTVGYGDVVPATPI 191
Query: 273 EMLFDIFYMLFNLGLTSYIIGNMTNL 298
+ I ML + + +IG ++N+
Sbjct: 192 GKVIGIAVMLTGISALTLLIGTVSNM 217
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 245 NRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNL 298
N Y A++W+I T TT GYGD+ P + MLF + I +TN
Sbjct: 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNF 95
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+Y+S+ TLTT GYGD + +F I Y+ +GL
Sbjct: 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ G T L+ A GH+E+V+VLL+ G + N D +G++P A + + ++
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEV 131
Query: 633 LLSY 636
LL Y
Sbjct: 132 LLKY 135
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ G T L+ A + GH+E+V+VLL+ G + N D G +P A + + ++
Sbjct: 39 DVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEV 98
Query: 633 LLS---------YENRTP 641
LL YE TP
Sbjct: 99 LLKHGADVNAKDYEGFTP 116
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+K +G T L+ A GH+E+V+VLL+ G + N D G
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFG 146
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+K ++G T L+ A RGH+E+V+VLL+ G + N D G
Sbjct: 105 DVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ G T L+ A GH+E+V+VLL+ G + N D G +P A + + ++
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEV 131
Query: 633 LLSY 636
LL Y
Sbjct: 132 LLKY 135
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ G T L+ A GH+E+V+VLL+ G + N D G +P
Sbjct: 39 DVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTP 83
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ +G T L+ A GH+E+V+VLL+ G + N DA G +P
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITP 104
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
D N+ G+T L+ A GH+E+V+VLL G + N D G +P A + + ++
Sbjct: 27 DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEV 86
Query: 633 LLSY 636
LL Y
Sbjct: 87 LLKY 90
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 388 QLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEI 447
+L +D + + P E +I + + + Y++ GAVD+ G V+ K D FGE+
Sbjct: 143 KLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---VINKLKDHDYFGEV 199
Query: 448 GVLYYRPQPFTVRTTELSQILRLSRTS 474
+L P+ TV T+ +++ L ++
Sbjct: 200 ALLNDLPRQATVTATKRTKVATLGKSG 226
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 372 VQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQ 431
++N +LF + D +++ ++ + P +I Q + Y++ G VD YV+
Sbjct: 9 IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDF--YVN-- 64
Query: 432 DKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMN 491
D + + G +FGE+ ++Y P+ TV T + L R + + + R++ +
Sbjct: 65 DNKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYD 124
Query: 492 NLFRKL 497
+L + +
Sbjct: 125 DLLKSM 130
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 572 VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
D+N DG T L+ A +++MVK L+E G N N+PD +GW P
Sbjct: 64 ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP 109
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DV +K ++G T L+ A + GH+E+VK+LLE G + N D G
Sbjct: 31 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+Y+S+ TLTT G+GD + +F I Y+ +GL
Sbjct: 32 RPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+++S+ TLTT GYGD + +F I Y+ +GL
Sbjct: 32 RPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+Y+S+ TLTT GYG+ + +F I Y+ +GL
Sbjct: 32 RPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+++S+ TLTT GYGD + +F I Y+ +GL
Sbjct: 32 RPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+Y+S+ TLTT GYG+ + +F I Y+ +GL
Sbjct: 32 RPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL 73
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DVN+ G T L+ A GH+E+V+VLL+ G + + D G++P A + + ++
Sbjct: 39 DVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEV 98
Query: 633 LLSY 636
LL Y
Sbjct: 99 LLKY 102
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632
DV++ G T L+ A GH+E+V+VLL+ G + N D G +P A + + ++
Sbjct: 72 DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEV 131
Query: 633 LLSY 636
LL Y
Sbjct: 132 LLKY 135
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ G T L+ A GH+E+V+VLL+ G + N D G
Sbjct: 105 DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFG 146
>pdb|3E97|A Chain A, Crystal Structure Of Transcriptional Regulator Of CrpFNR
Family (Yp_604437.1) From Deinococcus Geothermalis Dsm
11300 At 1.86 A Resolution
Length = 231
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 377 LFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHY-VDGQDKVL 435
LFQ V D + + + F P E V+ Q+ L+++ +G V + + G+++VL
Sbjct: 13 LFQNVPEDAXREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVL 72
Query: 436 GKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSR 472
G A GE VL ++ + +VR + L L R
Sbjct: 73 GDIYAPGVVGETAVLAHQERSASVRALTPVRTLXLHR 109
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN++ G T L+ A GH+E+V+VLL+ G + N D G +P
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTP 83
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ G T L A GH+E+V+VLL+ G + N D +G +P
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116
Score = 35.8 bits (81), Expect = 0.088, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ +G T L+ A GH+E+V+VLL+ G + N D G
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ G T L+ A GH+E+V+VLL+ G + + D G++P
Sbjct: 39 DVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTP 83
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ DG T L+ A + G++E+V+VLL+ G + N D G
Sbjct: 105 DVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DV++ G T L+ A GH+E+V+VLL+ G + N D+ G +P
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTP 116
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 574 VNSKVEDGQTELNAANQRGHIEMVKVLLEGGR-NGNKPDAKGWSPKAPAEQPVNRSMYDL 632
V+ K +G T L+ A ++GH E+V+ LL G+ + N D GW+P A + + + L
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 633 LLS 635
LLS
Sbjct: 130 LLS 132
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
++++ ED +T L A + H+E VK L++ G + DA+G
Sbjct: 36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77
>pdb|1I6X|A Chain A, Structure Of A Star Mutant Crp-Camp At 2.2 A
pdb|1I6X|B Chain B, Structure Of A Star Mutant Crp-Camp At 2.2 A
Length = 209
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVD-LIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQP 456
+P K +I Q E LY +V G+V LI + +G++ +L GD GE+G L+ Q
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKHEEGKEMILSYLNQGDFIGELG-LFEEGQE 81
Query: 457 FT--VRTTELSQILRLSRTSLMNSIQAN 482
+ VR ++ +S IQ N
Sbjct: 82 RSAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|4AVC|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVC|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 377 LFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLG 436
+FQG + L L + + + ++ Q E ++ SG+ ++ H D ++
Sbjct: 20 VFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIA 79
Query: 437 KAVAGDAFGEIGVLYYRPQPFTVRTTE 463
+A+ G GEI +L P+ TV T E
Sbjct: 80 RALPGXIVGEIALLRDSPRSATVTTIE 106
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+Y+S+ TLTT G GD + +F I Y+ +GL
Sbjct: 32 RPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|4AVA|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 From Mycobacterium Tuberculosis
pdb|4AVB|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVB|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 377 LFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLG 436
+FQG + L L + + + ++ Q E ++ SG+ ++ H D ++
Sbjct: 20 VFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIA 79
Query: 437 KAVAGDAFGEIGVLYYRPQPFTVRTTE 463
+A+ G GEI +L P+ TV T E
Sbjct: 80 RALPGMIVGEIALLRDSPRSATVTTIE 106
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DV +K ++G T L+ A + GH+E+VK+LLE G + D G
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ G T L+ A GH+E+V+VLL+ G + N D G +P
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTP 83
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ G T L+ A GH+E+V+VLL+ G + N D G +P
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTP 116
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ G T L+ A GH+E+V+VLL+ G + N D G
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 36.6 bits (83), Expect = 0.055, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ DG T L+ A GH+E+V+VLL+ G + N D G
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFG 113
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ G T L+ A H+E+V+VLL+ G + N D G +P
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTP 83
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 36.6 bits (83), Expect = 0.057, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN++ + G T L+ A H+E+V+VLL+ G + N DA G +P
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETP 83
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ G+T L+ GH+E+V+VLL+ G + N D G
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 36.6 bits (83), Expect = 0.062, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ G T L+ A GH+E+V+VLL+ G + N D G +P
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTP 83
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
DVN+ G T L+ A GH+E+V+VLL+ G + N D G +P
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTP 116
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ G T L+ A GH+E+V+VLL+ G + N D G
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 237 NFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLG 286
+F E W ++YW+ T+ T GYGD P M F + ++ +G
Sbjct: 39 HFIEGESWT---VSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIG 85
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 579 EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
++G T L+ A GH E+VK L++ G N N D+ GW+P
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVL--GKAVAGDAFGEIGVLYYRPQ 455
F E +++Q E D YI+ G ++ ++ + G+ D FGEI +L RP+
Sbjct: 276 FEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPR 335
Query: 456 PFTVRTTELSQILRLSR 472
TV + ++L R
Sbjct: 336 AATVVARGPLKCVKLDR 352
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 23/131 (17%)
Query: 377 LFQGVSHDFLFQLV-----SDMDAEYFP----PKEDVILQNEAPTDLYILVSGAVDLIHY 427
L + +S + LF + SD+ FP E VI Q + Y++ G VD+ Y
Sbjct: 128 LAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDV--Y 185
Query: 428 VDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGR 487
V+G+ + G +FGE+ ++Y P+ TV+ ++ + R S R
Sbjct: 186 VNGE--WVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYR----------R 233
Query: 488 IVMNNLFRKLK 498
I+M + RK K
Sbjct: 234 ILMGSTLRKRK 244
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHW---- 302
Y A++WS+ T TT GYGDL+ L + M+ G+TS+ G +T + W
Sbjct: 41 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV--AGITSF--GLVTAALATWFVGR 96
Query: 303 --TSRTRNFRETVRAVSEFATR 322
R R + +A E TR
Sbjct: 97 EQERRGHFVRHSEKAAEEAYTR 118
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 35.8 bits (81), Expect = 0.086, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+Y+S+ TLTT G G+ + +F I Y+ +GL
Sbjct: 49 RPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGL 90
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 579 EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
++G T L+ A GH E+VK L++ G N N D+ GW+P
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 377 LFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIH-YVDGQDKVL 435
LF G++ + + +S +P + + Q + LY++ SG V L ++ GQ++ L
Sbjct: 6 LFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTL 65
Query: 436 GKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQ 480
G+ FGE+ +L + + E +++L L R + I+
Sbjct: 66 ALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIR 110
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 35.8 bits (81), Expect = 0.098, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 579 EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
+D +T L+ A GH E+V+ LL+ G N D GWSP
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 77
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 574 VNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLL 633
VN+ ++G T L+ A + E+ +LLEGG N + D + A N M +L
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159
Query: 634 LSY---------ENRTP-----DEHKVE 647
L Y E TP DE +VE
Sbjct: 160 LYYKASTNIQDTEGNTPLHLACDEERVE 187
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 35.8 bits (81), Expect = 0.098, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 579 EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
+D +T L+ A GH E+V+ LL+ G N D GWSP
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 574 VNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLL 633
VN+ ++G T L+ A + E+ +LLEGG N + D + A N M +L
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158
Query: 634 LSY---------ENRTP-----DEHKVE 647
L Y E TP DE +VE
Sbjct: 159 LYYKASTNIQDTEGNTPLHLACDEERVE 186
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+Y+S+ TLTT G G+ + +F I Y+ +GL
Sbjct: 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 568 TACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
TA DVN+ G T L+ A GH+E+V+VLL+ G + N G +P
Sbjct: 34 TANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTP 83
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614
DVN+ G+T L+ A H+E+V+VLL+ G + N D G
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3R|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVD-LIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQP 456
+P K +I Q E LY +V G+V LI +G++ +L GD GE+G L+ Q
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 74
Query: 457 FT--VRTTELSQILRLSRTSLMNSIQAN 482
+ VR ++ +S IQ N
Sbjct: 75 RSAWVRAKTACEVAEISYKKFRQLIQVN 102
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 19/68 (27%)
Query: 198 CTKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITT 257
T L V LFAV A Y+I +R PEK + AM+W++ T
Sbjct: 132 VTTLFGVVLFAVALAA---YVI-ERDIQPEK---------------FGSIPQAMWWAVVT 172
Query: 258 LTTTGYGD 265
L+TTGYGD
Sbjct: 173 LSTTGYGD 180
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+Y+S+ TLTT G G+ + +F I Y+ +GL
Sbjct: 49 RPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVD-LIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQP 456
+P K +I Q E LY +V G+V LI +G++ +L GD GE+G L+ Q
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 74
Query: 457 FT--VRTTELSQILRLSRTSLMNSIQAN 482
+ VR ++ +S IQ N
Sbjct: 75 RSAWVRAKTACEVAEISYKKFRQLIQVN 102
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+Y+S+ TLTT G G+ + +F I Y+ +GL
Sbjct: 49 RPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1I5Z|A Chain A, Structure Of Crp-Camp At 1.9 A
pdb|1I5Z|B Chain B, Structure Of Crp-Camp At 1.9 A
pdb|1ZRC|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRC|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRD|A Chain A, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRD|B Chain B, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRE|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRE|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRF|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|1ZRF|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|2GZW|A Chain A, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|B Chain B, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|C Chain C, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|D Chain D, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2WC2|A Chain A, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|2WC2|B Chain B, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|3IYD|G Chain G, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3IYD|H Chain H, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3N4M|A Chain A, E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain In
Complex With Cap And Dna
Length = 209
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVD-LIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQP 456
+P K +I Q E LY +V G+V LI +G++ +L GD GE+G L+ Q
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 81
Query: 457 FT--VRTTELSQILRLSRTSLMNSIQAN 482
+ VR ++ +S IQ N
Sbjct: 82 RSAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUO|B Chain B, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
Length = 209
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVD-LIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQP 456
+P K +I Q E LY +V G+V LI +G++ +L GD GE+G L+ Q
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 81
Query: 457 FT--VRTTELSQILRLSRTSLMNSIQAN 482
+ VR ++ +S IQ N
Sbjct: 82 RSAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|3HIF|A Chain A, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|B Chain B, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|C Chain C, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|D Chain D, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|E Chain E, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|F Chain F, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3RYP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVD-LIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQP 456
+P K +I Q E LY +V G+V LI +G++ +L GD GE+G L+ Q
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 82
Query: 457 FT--VRTTELSQILRLSRTSLMNSIQAN 482
+ VR ++ +S IQ N
Sbjct: 83 RSAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant
pdb|3FWE|B Chain B, Crystal Structure Of The Apo D138l Cap Mutant
Length = 210
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVD-LIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQP 456
+P K +I Q E LY +V G+V LI +G++ +L GD GE+G L+ Q
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 82
Query: 457 FT--VRTTELSQILRLSRTSLMNSIQAN 482
+ VR ++ +S IQ N
Sbjct: 83 RSAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVD-LIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQP 456
+P K +I Q E LY +V G+V LI +G++ +L GD GE+G L+ Q
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 82
Query: 457 FT--VRTTELSQILRLSRTSLMNSIQAN 482
+ VR ++ +S IQ N
Sbjct: 83 RSAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
Length = 205
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVD-LIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQP 456
+P K +I Q E LY +V G+V LI +G++ +L GD GE+G L+ Q
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 81
Query: 457 FT--VRTTELSQILRLSRTSLMNSIQAN 482
+ VR ++ +S IQ N
Sbjct: 82 RSAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+Y+S+ TLTT G G+ + +F I Y+ +GL
Sbjct: 49 RPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 237 NFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIG 293
+F E W ++YW+ T+ T GYGD P M F + L LG+ ++ +
Sbjct: 39 HFIEGESWT---VSLYWTFVTIATVGYGDYSPSTPLGMYFTV--TLIVLGIATFAVA 90
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYII--GNMTNLVVHWTS 304
++ +YW+IT +TT G+GD+ E+ LF + + I+ G ++ + W
Sbjct: 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIE 111
Query: 305 RTRNFRETVRAVSEFATRNHL 325
R + T+ + TR H+
Sbjct: 112 RRLRYHPTIELPDD--TRGHI 130
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+Y+S+ TLTT G G+ + +F I Y+ +GL
Sbjct: 31 RPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 72
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHW 302
Y A++WS+ T TT GYGDL+ L + M+ G+TS+ G +T + W
Sbjct: 69 YPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMV--AGITSF--GLVTAALATW 120
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVD-LIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQP 456
+P K +I Q E LY +V G+V LI +G++ +L GD GE+G L+ Q
Sbjct: 74 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG-LFEEGQE 132
Query: 457 FT--VRTTELSQILRLSRTSLMNSIQAN 482
+ VR ++ +S IQ N
Sbjct: 133 RSAWVRAKTACEVAEISYKKFRQLIQVN 160
>pdb|3U5Z|G Chain G, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|H Chain H, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|F Chain F, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|Q Chain Q, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|R Chain R, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|P Chain P, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|G Chain G, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|H Chain H, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|F Chain F, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|G Chain G, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|H Chain H, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|F Chain F, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 228
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 453 RPQPFTV-------RTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGF 505
+P PF V + +L Q+LR+SR +++I +++G+IV+N F K++D
Sbjct: 105 KPIPFPVASAVTEIKAEDLQQLLRVSRGLQIDTIAITVKEGKIVING-FNKVEDSALTRV 163
Query: 506 EYPTT 510
+Y T
Sbjct: 164 KYSLT 168
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 543 MWETRNLNFLGPQATDIEASKDQDSTACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLE 602
MW +N D++ KD A DVN +E G+ L+ A G +E+++ LL
Sbjct: 12 MWALKN--------GDLDEVKDY--VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 603 GGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLS 635
G + N PD +P A + S LLLS
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLS 94
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 543 MWETRNLNFLGPQATDIEASKDQDSTACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLE 602
MW +N D++ KD A DVN +E G+ L+ A G +E+++ LL
Sbjct: 7 MWALKN--------GDLDEVKDY--VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 56
Query: 603 GGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLS 635
G + N PD +P A + S LLLS
Sbjct: 57 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLS 89
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLG 286
+ ++YW+ T+ T GYGD P M F ++ +G
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIG 68
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLG 286
+ ++YW+ T+ T GYGD P M F ++ +G
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIG 68
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLG 286
+ ++YW+ T+ T GYGD P M F ++ +G
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIG 68
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVH 301
+ ++YW+ T+ T GYGD P M F ++ +G + + + +++
Sbjct: 36 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFLIN 90
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 576 SKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
S +E L A RG +E V+ LLE G N N P++ G P
Sbjct: 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRP 48
>pdb|1CZD|A Chain A, Crystal Structure Of The Processivity Clamp Gp45 From
Bacteriophage T4
pdb|1CZD|B Chain B, Crystal Structure Of The Processivity Clamp Gp45 From
Bacteriophage T4
pdb|1CZD|C Chain C, Crystal Structure Of The Processivity Clamp Gp45 From
Bacteriophage T4
Length = 228
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 453 RPQPFTV-------RTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGF 505
+P PF V + +L Q+LR+SR +++I +++G+IV+N F K++D
Sbjct: 105 KPIPFPVASAVTEIKAEDLQQLLRVSRGLQIDTIAITVKEGKIVING-FNKVEDSALTRV 163
Query: 506 EYPTT 510
+Y T
Sbjct: 164 KYSLT 168
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHW 302
Y A++WS+ T TT GYGDL+ L + M+ G+TS+ G +T + W
Sbjct: 62 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV--AGITSF--GLVTAALATW 113
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHW 302
Y A++WS+ T TT GYGDL+ L + M+ G+TS+ G +T + W
Sbjct: 68 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV--AGITSF--GLVTAALATW 119
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS++T TT GYGDL+
Sbjct: 41 YPRALWWSVSTATTVGYGDLY 61
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHW---- 302
Y A++WS+ T TT GYGDL+ + M+ G+TS+ G +T + W
Sbjct: 62 YPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF--GLVTAALATWFVGR 117
Query: 303 --TSRTRNFRETVRAVSEFATR 322
R R + +A E TR
Sbjct: 118 EQERRGHFVRHSEKAAEEAYTR 139
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYII--GNMTNLVVHWTS 304
++ +YW+IT +TT G+GD+ E+ LF + + I+ G ++ + W
Sbjct: 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLLIILPFGFVSMFLAPWIE 111
Query: 305 RTRNFRETVRAVSEFATRNHL 325
R + T+ + TR H+
Sbjct: 112 RRLRYHPTIELPDD--TRGHI 130
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVD-LIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQP 456
+P K +I Q E LY +V G+V LI +G++ +L GD GE+G L+ Q
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILFYLNQGDFIGELG-LFEEGQE 82
Query: 457 FT--VRTTELSQILRLSRTSLMNSIQAN 482
+ VR ++ +S IQ N
Sbjct: 83 RSAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 62 YPRALWWSVATATTVGYGDLY 82
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 41 YPRALWWSVATATTVGYGDLY 61
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 249 TAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRN 308
+A ++S T +TT GYG++ LF IFY L + L ++ + + + +
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL------GSS 171
Query: 309 FRETVRAVSEFATRNHLPPHI 329
R + + + H+PP +
Sbjct: 172 LRHGIGHIEAIFLKWHVPPEL 192
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 244 WNRYVTAMYWSITTLTTTGYGDLHA------ENPREMLFDIFYMLFNLGLTSYIIGNMTN 297
W++ + A+Y+ I TLTT G+GD A ++P F++L L + ++ + N
Sbjct: 223 WSK-LEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGN 281
Query: 298 LVVHWTSRTR 307
+ + RTR
Sbjct: 282 WLRVVSRRTR 291
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 41 YPRALWWSVQTATTVGYGDLY 61
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 41 YPRALWWSVITATTVGYGDLY 61
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 85 YPDALWWSVETATTVGYGDLY 105
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 62 YPRALWWSVETATTVGYGDLY 82
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 42 YPRALWWSVETATTVGYGDLY 62
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 62 YPRALWWSVETATTVGYGDLY 82
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 62 YPRALWWSVETATTVGYGDLY 82
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 41 YPRALWWSVETATTVGYGDLY 61
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 62 YPRALWWSVETATTVGYGDLY 82
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 62 YPRALWWSVETATTVGYGDLY 82
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 40 YPRALWWSVETATTVGYGDLY 60
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 581 GQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYE 637
G+T L+ A+ +G I V+ LL+ G + N D GW+P A + + +LLL ++
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 247 YVTAMYWSITTLTTTGYGDLH 267
Y A++WS+ T TT GYGDL+
Sbjct: 62 YPRALWWSVHTATTVGYGDLY 82
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 347 KQQETLVGLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVIL 406
K +T+ L KAI ++ LF + + + M F E VI
Sbjct: 28 KDYKTMAALAKAIEKNV-------------LFSHLDDNERSDIFDAMFPVSFIAGETVIQ 74
Query: 407 QNEAPTDLYILVSGAVDLIHYVDGQ-DKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELS 465
Q + + Y++ G +D+ YV+ + +G+ G +FGE+ ++Y P+ TV+
Sbjct: 75 QGDEGDNFYVIDQGEMDV--YVNNEWATSVGE---GGSFGELALIYGTPRAATVKAKTNV 129
Query: 466 QILRLSRTSLMNSIQANMEDGRIVMNNLFRKLK 498
++ + R S RI+M + RK K
Sbjct: 130 KLWGIDRDSYR----------RILMGSTLRKRK 152
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 347 KQQETLVGLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVIL 406
K +T+ L KAI ++ LF + + + M F E VI
Sbjct: 35 KDYKTMAALAKAIEKNV-------------LFSHLDDNERSDIFDAMFPVSFIAGETVIQ 81
Query: 407 QNEAPTDLYILVSGAVDLIHYVDGQ-DKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELS 465
Q + + Y++ G +D+ YV+ + +G+ G +FGE+ ++Y P+ TV+
Sbjct: 82 QGDEGDNFYVIDQGEMDV--YVNNEWATSVGE---GGSFGELALIYGTPRAATVKAKTNV 136
Query: 466 QILRLSRTSLMNSIQANMEDGRIVMNNLFRKLK 498
++ + R S RI+M + RK K
Sbjct: 137 KLWGIDRDSYR----------RILMGSTLRKRK 159
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 579 EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
+D +T L+ A GH E+V+ LL+ G N D GWSP
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 579 EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
+D +T L+ A GH E+V+ LL+ G N D GWSP
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287
R + A+Y+S+ TLTT G G+ + +F I Y+ +GL
Sbjct: 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGL 93
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 569 ACPVDVNSKVEDGQTELNAANQRGHIEMVKVLL 601
AC DVN + +DG T L A + GH E+ +LL
Sbjct: 204 ACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLG 286
+ ++YW+ T+ GYGD P M F ++ +G
Sbjct: 29 WTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIG 68
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 32.7 bits (73), Expect = 0.82, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 247 YVTAMYWSITTLTTTGYGDL 266
Y A++WS+ T TT GYGDL
Sbjct: 40 YPRALWWSVETATTVGYGDL 59
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 32.7 bits (73), Expect = 0.82, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 247 YVTAMYWSITTLTTTGYGDL 266
Y A++WS+ T TT GYGDL
Sbjct: 41 YPRALWWSVETATTVGYGDL 60
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 386 LFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVD-LIHYVDGQDKVLGKAVAGDAF 444
L +L++ + K +I + L+ ++ G+V LI DG++ ++G +GD F
Sbjct: 6 LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF 65
Query: 445 GEIGVL 450
GE+G+
Sbjct: 66 GELGLF 71
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHW 302
Y A++WS+ T T GYGDL+ L + M+ G+TS+ G +T + W
Sbjct: 62 YPRALWWSVETATCVGYGDLYPVTLWGRLVAVVVMV--AGITSF--GLVTAALATW 113
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
D + E+G T L+ A + +V L+ G N N PD+ GW+P
Sbjct: 46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTP 90
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 576 SKVEDGQTELNAANQRGHIEMVKVLLEGGRNGN-KPDAKGWSPKAPAEQPVNRSMYDLLL 634
+ VED + A Q +++V+ LLEGG N N + + GW+P A Q + +LLL
Sbjct: 1 AAVEDNHLLIKAV-QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
Query: 635 SY 636
+
Sbjct: 60 RH 61
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 347 KQQETLVGLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVIL 406
K +T+ L KAI ++ LF + + + M F E VI
Sbjct: 25 KDYKTMAALAKAIEKNV-------------LFSHLDDNERSDIFDAMFPVSFIAGETVIQ 71
Query: 407 QNEAPTDLYILVSGAVDLIHYVDGQ-DKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELS 465
Q + + Y++ G +D+ YV+ + +G+ G +FGE+ ++Y P+ TV+
Sbjct: 72 QGDEGDNFYVIDQGEMDV--YVNNEWATSVGE---GGSFGELALIYGTPRAATVKAKTNV 126
Query: 466 QILRLSRTSLMNSIQANMEDGRIVMNNLFRKLK 498
++ + R S RI+M + RK K
Sbjct: 127 KLWGIDRDSYR----------RILMGSTLRKRK 149
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVL--GKAVAGDAFGEIGVLYYRPQ 455
F + +++Q E + +I++ G+ ++ ++ + G+ D FGEI +L RP+
Sbjct: 181 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPR 240
Query: 456 PFTVRTTELSQILRLSR 472
TV + ++L R
Sbjct: 241 AATVVARGPLKCVKLDR 257
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVL--GKAVAGDAFGEIGVLYYRPQ 455
F + +++Q E + +I++ G+ ++ ++ + G+ D FGEI +L RP+
Sbjct: 185 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPK 244
Query: 456 PFTVRTTELSQILRLSR 472
TV + ++L R
Sbjct: 245 AATVVARGPLKCVKLDR 261
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 347 KQQETLVGLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVIL 406
K +T+ L KAI ++ LF + + + M F E VI
Sbjct: 29 KDYKTMAALAKAIEKNV-------------LFSHLDDNERSDIFDAMFPVSFIAGETVIQ 75
Query: 407 QNEAPTDLYILVSGAVDLIHYVDGQ-DKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELS 465
Q + + Y++ G +D+ YV+ + +G+ G +FGE+ ++Y P+ TV+
Sbjct: 76 QGDEGDNFYVIDQGEMDV--YVNNEWATSVGE---GGSFGELALIYGTPRAATVKAKTNV 130
Query: 466 QILRLSRTSLMNSIQANMEDGRIVMNNLFRKLK 498
++ + R S RI+M + RK K
Sbjct: 131 KLWGIDRDSYR----------RILMGSTLRKRK 153
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVL--GKAVAGDAFGEIGVLYYRPQ 455
F + +++Q E + +I++ G+ ++ ++ + G+ D FGEI +L RP+
Sbjct: 183 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPR 242
Query: 456 PFTVRTTELSQILRLSR 472
TV + ++L R
Sbjct: 243 AATVVARGPLKCVKLDR 259
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 347 KQQETLVGLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVIL 406
K +T+ L KAI ++ LF + + + M F E VI
Sbjct: 27 KDYKTMAALAKAIEKNV-------------LFSHLDDNERSDIFDAMFPVSFIAGETVIQ 73
Query: 407 QNEAPTDLYILVSGAVDLIHYVDGQ-DKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELS 465
Q + + Y++ G +D+ YV+ + +G+ G +FGE+ ++Y P+ TV+
Sbjct: 74 QGDEGDNFYVIDQGEMDV--YVNNEWATSVGE---GGSFGELALIYGTPRAATVKAKTNV 128
Query: 466 QILRLSRTSLMNSIQANMEDGRIVMNNLFRKLK 498
++ + R S RI+M + RK K
Sbjct: 129 KLWGIDRDSYR----------RILMGSTLRKRK 151
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 576 SKVEDGQTELNAANQRGHIEMVKVLLEGGRNGN-KPDAKGWSPKAPAEQPVNRSMYDLLL 634
+ VED + A Q +++V+ LLEGG N N + + GW+P A Q + +LLL
Sbjct: 21 AAVEDNHLLIKAV-QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 79
Query: 635 SY 636
+
Sbjct: 80 RH 81
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAEN 270
+V A ++S+ TL T GYGD+H +
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQT 120
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 247 YVTAMYWSITTLTTTGYGDLHAEN 270
+V A ++S+ TL T GYGD+H +
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQT 120
>pdb|3IWZ|A Chain A, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|B Chain B, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|C Chain C, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|D Chain D, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
Length = 230
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 398 FPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYR-PQ 455
+P + DV + LY ++SG+V +I D ++ VLG +G+ GE+G+ +
Sbjct: 39 YPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTR 98
Query: 456 PFTVRTTELSQILRLSRTSLMNSIQANM 483
+RT ++ +S L Q ++
Sbjct: 99 EVILRTRTQCELAEISYERLQQLFQTSL 126
>pdb|1B77|A Chain A, Building A Replisome Structure From Interacting Pieces: A
Sliding Clamp Complexed With An Interaction Peptide From
Dna Polymerase
pdb|1B77|B Chain B, Building A Replisome Structure From Interacting Pieces: A
Sliding Clamp Complexed With An Interaction Peptide From
Dna Polymerase
pdb|1B77|C Chain C, Building A Replisome Structure From Interacting Pieces: A
Sliding Clamp Complexed With An Interaction Peptide From
Dna Polymerase
pdb|1B8H|A Chain A, Sliding Clamp, Dna Polymerase
pdb|1B8H|B Chain B, Sliding Clamp, Dna Polymerase
pdb|1B8H|C Chain C, Sliding Clamp, Dna Polymerase
Length = 228
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 459 VRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKD 499
++ +L Q+LR+SR +++I +DG+IV+N + K++D
Sbjct: 118 IKAEDLQQLLRVSRGLQIDTIAITNKDGKIVING-YNKVED 157
>pdb|3FX3|A Chain A, Structure Of A Putative Camp-Binding Regulatory Protein
From Silicibacter Pomeroyi Dss-3
pdb|3FX3|B Chain B, Structure Of A Putative Camp-Binding Regulatory Protein
From Silicibacter Pomeroyi Dss-3
Length = 237
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 361 SSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSG 420
++ AH I +N L + + + L+S + E + LQ E +++++ G
Sbjct: 2 NAXAHEAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDG 61
Query: 421 AVDLIHYV-DGQDKVLGKAVAGDAFGEIGVLYYRPQPFT 458
V L G + V+ G++FGE L P P +
Sbjct: 62 WVKLFRXTPTGSEAVVSVFTRGESFGEAVALRNTPYPVS 100
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 576 SKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP 617
S +E L A RG +E V+ LLE G N P++ G P
Sbjct: 7 SSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRP 48
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 247 YVTAMYWSITTLTTTGYGD 265
Y A++WS+ T TT GYGD
Sbjct: 41 YPDAIWWSVETATTVGYGD 59
>pdb|3H3Z|A Chain A, Crystal Structure Of A Putative Cyclic Nucleotide Binding
Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3 At 2.35
A Resolution
pdb|3H3Z|B Chain B, Crystal Structure Of A Putative Cyclic Nucleotide Binding
Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3 At 2.35
A Resolution
Length = 235
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 364 AHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVD 423
AH I +N L + + + L+S + E + LQ E +++++ G V
Sbjct: 3 AHEAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVK 62
Query: 424 LIHYV-DGQDKVLGKAVAGDAFGEIGVLYYRPQPFT 458
L G + V+ G++FGE L P P +
Sbjct: 63 LFRXTPTGSEAVVSVFTRGESFGEAVALRNTPYPVS 98
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGR 605
D+N G L A ++GHI+ VK+LLE GR
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 572 VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPA 621
+VN + +G+T L A++ G E+VK LLE G + + D G + +A A
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASA 174
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 572 VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYD 631
+VN K +D T L+ A +R H ++++VL + G N D+ G + A +
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCR 297
Query: 632 LLLSY 636
LLLSY
Sbjct: 298 LLLSY 302
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 570 CPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGG 604
C VDVN +G T L A H++ VK+LLE G
Sbjct: 89 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 123
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 250 AMYWSITTLTTTGYGDLHAEN 270
A ++S+ TL T GYGD+H +
Sbjct: 82 AFFFSVETLATVGYGDMHPQT 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,341,330
Number of Sequences: 62578
Number of extensions: 970386
Number of successful extensions: 2342
Number of sequences better than 100.0: 166
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2088
Number of HSP's gapped (non-prelim): 272
length of query: 784
length of database: 14,973,337
effective HSP length: 107
effective length of query: 677
effective length of database: 8,277,491
effective search space: 5603861407
effective search space used: 5603861407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)