Query 003951
Match_columns 784
No_of_seqs 677 out of 4561
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 14:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03192 Voltage-dependent pot 100.0 3E-114 7E-119 1033.0 71.3 744 26-776 26-820 (823)
2 KOG0498 K+-channel ERG and rel 100.0 5.6E-88 1.2E-92 753.5 45.8 565 26-614 41-642 (727)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 2.5E-63 5.5E-68 516.2 30.9 474 5-493 160-669 (971)
4 KOG0500 Cyclic nucleotide-gate 100.0 8.3E-62 1.8E-66 501.8 35.7 415 66-492 3-433 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 1E-55 2.2E-60 461.5 32.9 433 50-501 218-660 (815)
6 PF11834 DUF3354: Domain of un 99.9 3.6E-24 7.8E-29 167.2 8.9 69 701-772 1-69 (69)
7 KOG3713 Voltage-gated K+ chann 99.9 9E-22 2E-26 207.5 19.3 241 40-310 171-441 (477)
8 KOG4412 26S proteasome regulat 99.8 3.2E-21 6.9E-26 175.3 8.3 129 511-639 49-197 (226)
9 KOG1419 Voltage-gated K+ chann 99.8 2.7E-19 5.8E-24 188.4 10.6 247 44-310 78-336 (654)
10 KOG4412 26S proteasome regulat 99.8 8.6E-20 1.9E-24 166.0 5.9 112 528-639 35-164 (226)
11 KOG1545 Voltage-gated shaker-l 99.7 2.6E-18 5.7E-23 171.6 4.9 181 89-301 253-448 (507)
12 PHA02791 ankyrin-like protein; 99.6 1.7E-16 3.6E-21 165.2 6.8 125 515-639 14-153 (284)
13 PRK09392 ftrB transcriptional 99.6 4.5E-15 9.7E-20 152.5 15.7 151 370-520 7-157 (236)
14 KOG0509 Ankyrin repeat and DHH 99.6 3.8E-16 8.2E-21 169.1 6.7 119 521-639 68-203 (600)
15 PHA02791 ankyrin-like protein; 99.6 3.8E-16 8.1E-21 162.5 6.0 128 510-639 71-219 (284)
16 PLN03192 Voltage-dependent pot 99.6 2.2E-13 4.7E-18 164.3 26.3 86 554-639 526-616 (823)
17 PHA02875 ankyrin repeat protei 99.6 2.1E-15 4.6E-20 168.5 6.2 129 511-639 46-193 (413)
18 PHA02743 Viral ankyrin protein 99.6 2.4E-15 5.1E-20 145.1 5.6 119 521-639 10-153 (166)
19 KOG0514 Ankyrin repeat protein 99.6 1.7E-15 3.6E-20 152.4 4.6 113 523-636 260-395 (452)
20 PHA02736 Viral ankyrin protein 99.6 1.3E-15 2.8E-20 145.4 3.6 115 525-639 11-151 (154)
21 KOG4390 Voltage-gated A-type K 99.6 3.9E-17 8.4E-22 164.5 -7.4 260 3-296 126-406 (632)
22 PHA02878 ankyrin repeat protei 99.6 3.4E-15 7.4E-20 169.8 6.5 87 553-639 168-260 (477)
23 PRK11753 DNA-binding transcrip 99.6 8.4E-14 1.8E-18 140.5 16.0 125 379-503 6-132 (211)
24 PHA03095 ankyrin-like protein; 99.5 4E-15 8.6E-20 169.5 7.0 126 514-639 168-315 (471)
25 PHA02795 ankyrin-like protein; 99.5 5.3E-15 1.2E-19 159.7 6.8 127 511-639 129-287 (437)
26 KOG0508 Ankyrin repeat protein 99.5 2.9E-15 6.3E-20 155.3 4.1 106 542-647 103-217 (615)
27 PHA02859 ankyrin repeat protei 99.5 5.4E-15 1.2E-19 148.2 4.9 128 511-639 32-184 (209)
28 PHA02878 ankyrin repeat protei 99.5 9.4E-15 2E-19 166.2 7.3 117 521-639 157-292 (477)
29 PHA03100 ankyrin repeat protei 99.5 5.8E-15 1.3E-19 168.5 5.5 128 512-639 155-308 (480)
30 KOG0509 Ankyrin repeat and DHH 99.5 5E-15 1.1E-19 160.5 4.5 124 516-639 94-237 (600)
31 PHA02716 CPXV016; CPX019; EVM0 99.5 9.5E-15 2.1E-19 168.3 6.3 78 562-639 294-391 (764)
32 PHA02874 ankyrin repeat protei 99.5 1.1E-14 2.4E-19 163.6 6.5 133 507-639 42-215 (434)
33 PHA02741 hypothetical protein; 99.5 7.8E-15 1.7E-19 142.1 4.4 115 525-639 15-157 (169)
34 KOG4177 Ankyrin [Cell wall/mem 99.5 8.9E-15 1.9E-19 171.5 5.4 119 521-639 464-598 (1143)
35 PHA02875 ankyrin repeat protei 99.5 1.1E-14 2.5E-19 162.6 5.9 130 510-639 12-160 (413)
36 PHA02716 CPXV016; CPX019; EVM0 99.5 1.6E-14 3.4E-19 166.6 7.1 129 511-639 153-344 (764)
37 cd00038 CAP_ED effector domain 99.5 2.2E-13 4.9E-18 122.2 12.4 113 377-489 1-114 (115)
38 PF13857 Ank_5: Ankyrin repeat 99.5 1.7E-14 3.6E-19 111.4 3.9 55 567-621 1-56 (56)
39 PRK10402 DNA-binding transcrip 99.5 2E-13 4.3E-18 139.0 12.7 115 385-499 23-138 (226)
40 PF12796 Ank_2: Ankyrin repeat 99.5 4.8E-14 1E-18 121.0 6.7 79 557-639 1-84 (89)
41 PHA02946 ankyin-like protein; 99.5 3.9E-14 8.4E-19 158.3 6.8 118 521-639 95-234 (446)
42 PHA02946 ankyin-like protein; 99.5 3.2E-14 6.9E-19 159.0 5.8 118 521-639 130-268 (446)
43 PHA03100 ankyrin repeat protei 99.5 4.7E-14 1E-18 161.0 7.2 134 506-639 41-201 (480)
44 PHA02989 ankyrin repeat protei 99.5 4.2E-14 9.2E-19 161.4 6.8 127 513-639 160-314 (494)
45 PHA02874 ankyrin repeat protei 99.5 5.1E-14 1.1E-18 158.2 7.1 125 513-639 137-280 (434)
46 PF00520 Ion_trans: Ion transp 99.5 1.2E-13 2.6E-18 137.6 8.6 190 93-295 1-200 (200)
47 KOG0510 Ankyrin repeat protein 99.5 2.8E-14 6.1E-19 157.4 3.8 116 525-640 267-403 (929)
48 KOG0818 GTPase-activating prot 99.5 6.4E-15 1.4E-19 153.0 -1.3 157 562-782 143-309 (669)
49 PRK11161 fumarate/nitrate redu 99.4 1.2E-12 2.6E-17 134.4 14.8 148 372-520 15-164 (235)
50 COG0664 Crp cAMP-binding prote 99.4 1E-12 2.2E-17 132.6 14.0 133 373-505 3-136 (214)
51 PF00027 cNMP_binding: Cyclic 99.4 5.6E-13 1.2E-17 114.6 10.4 90 395-484 1-91 (91)
52 PHA02798 ankyrin-like protein; 99.4 7.9E-14 1.7E-18 158.9 6.5 73 567-639 244-316 (489)
53 KOG4177 Ankyrin [Cell wall/mem 99.4 1.1E-13 2.3E-18 162.6 7.1 133 507-639 481-631 (1143)
54 KOG1420 Ca2+-activated K+ chan 99.4 2.2E-14 4.7E-19 151.2 1.2 184 92-309 165-351 (1103)
55 KOG0512 Fetal globin-inducing 99.4 1.4E-13 3E-18 124.8 6.0 81 559-639 69-155 (228)
56 PHA03095 ankyrin-like protein; 99.4 1.5E-13 3.1E-18 156.6 7.9 129 511-639 25-179 (471)
57 PHA02859 ankyrin repeat protei 99.4 9.3E-14 2E-18 139.3 5.4 114 512-625 65-203 (209)
58 PHA02989 ankyrin repeat protei 99.4 1.5E-13 3.2E-18 157.0 7.4 126 514-640 51-211 (494)
59 PHA02884 ankyrin repeat protei 99.4 1E-13 2.2E-18 144.2 5.4 84 553-636 70-159 (300)
60 PHA02876 ankyrin repeat protei 99.4 1E-13 2.2E-18 164.7 6.3 119 521-639 331-468 (682)
61 KOG0508 Ankyrin repeat protein 99.4 7.7E-14 1.7E-18 144.9 4.0 118 521-639 107-240 (615)
62 COG2905 Predicted signal-trans 99.4 6.9E-13 1.5E-17 142.1 11.1 175 369-548 6-181 (610)
63 smart00100 cNMP Cyclic nucleot 99.4 2.3E-12 5.1E-17 116.3 13.0 115 377-491 1-118 (120)
64 KOG0510 Ankyrin repeat protein 99.4 2E-13 4.4E-18 150.7 6.9 121 521-641 215-368 (929)
65 PHA02730 ankyrin-like protein; 99.4 2.6E-13 5.6E-18 153.6 7.9 127 512-639 358-523 (672)
66 PHA02798 ankyrin-like protein; 99.4 1.9E-13 4E-18 155.9 6.9 128 512-639 50-211 (489)
67 KOG0614 cGMP-dependent protein 99.4 2.4E-13 5.2E-18 143.2 6.0 154 363-520 147-300 (732)
68 KOG4214 Myotrophin and similar 99.4 2.3E-13 4.9E-18 110.3 3.9 78 562-640 12-93 (117)
69 PHA02876 ankyrin repeat protei 99.4 5.6E-13 1.2E-17 158.4 7.8 119 521-639 297-434 (682)
70 KOG1113 cAMP-dependent protein 99.4 1.1E-12 2.3E-17 132.9 7.7 129 369-501 121-249 (368)
71 PHA02795 ankyrin-like protein; 99.4 3.3E-13 7.2E-18 145.9 4.2 119 521-639 100-246 (437)
72 PHA02917 ankyrin-like protein; 99.4 1.3E-12 2.9E-17 151.7 9.4 126 514-639 347-511 (661)
73 PF13637 Ank_4: Ankyrin repeat 99.3 8.9E-13 1.9E-17 101.1 4.8 54 581-634 1-54 (54)
74 PHA02884 ankyrin repeat protei 99.3 1.4E-12 2.9E-17 135.8 7.4 84 556-639 36-129 (300)
75 KOG0505 Myosin phosphatase, re 99.3 6E-13 1.3E-17 141.4 4.1 128 512-639 85-256 (527)
76 PHA02917 ankyrin-like protein; 99.3 1.1E-12 2.4E-17 152.4 6.3 130 511-640 46-222 (661)
77 KOG0515 p53-interacting protei 99.3 1.2E-12 2.6E-17 137.3 5.8 80 560-639 557-641 (752)
78 TIGR03697 NtcA_cyano global ni 99.3 9E-12 1.9E-16 123.7 12.0 104 401-504 1-107 (193)
79 PHA02741 hypothetical protein; 99.3 2.1E-12 4.5E-17 125.2 6.7 88 552-639 20-124 (169)
80 PRK09391 fixK transcriptional 99.3 1.7E-11 3.7E-16 125.1 13.2 130 388-520 33-163 (230)
81 PHA02743 Viral ankyrin protein 99.3 2.8E-12 6E-17 123.7 6.2 87 553-639 20-120 (166)
82 KOG0195 Integrin-linked kinase 99.3 2.9E-12 6.4E-17 125.1 5.6 87 553-639 34-125 (448)
83 KOG0512 Fetal globin-inducing 99.3 3.8E-12 8.1E-17 115.6 5.2 84 553-636 97-186 (228)
84 KOG0502 Integral membrane anky 99.3 1.2E-11 2.6E-16 116.5 8.7 115 525-639 90-218 (296)
85 KOG0502 Integral membrane anky 99.3 3.3E-12 7.2E-17 120.3 4.6 119 521-639 119-251 (296)
86 PF07885 Ion_trans_2: Ion chan 99.3 2.7E-11 5.9E-16 100.9 9.6 77 205-300 2-78 (79)
87 KOG0195 Integrin-linked kinase 99.3 4.2E-12 9.2E-17 124.0 4.7 119 521-639 24-158 (448)
88 KOG0614 cGMP-dependent protein 99.2 1.7E-11 3.8E-16 129.4 6.7 122 366-487 268-392 (732)
89 PRK13918 CRP/FNR family transc 99.2 1.1E-10 2.4E-15 116.8 11.8 102 392-500 5-109 (202)
90 PHA02792 ankyrin-like protein; 99.2 3.5E-11 7.6E-16 135.0 7.1 73 567-639 396-478 (631)
91 PLN02868 acyl-CoA thioesterase 99.2 1.6E-10 3.5E-15 128.2 12.2 113 370-485 8-121 (413)
92 KOG0514 Ankyrin repeat protein 99.2 2.1E-11 4.6E-16 123.2 4.6 128 511-638 279-431 (452)
93 KOG4214 Myotrophin and similar 99.2 3.2E-11 7E-16 97.9 4.6 78 553-633 34-116 (117)
94 PHA02730 ankyrin-like protein; 99.1 3.9E-11 8.4E-16 136.2 6.7 99 541-639 364-487 (672)
95 KOG0505 Myosin phosphatase, re 99.1 7.5E-11 1.6E-15 125.7 7.0 92 548-639 35-131 (527)
96 PTZ00322 6-phosphofructo-2-kin 99.1 7E-11 1.5E-15 138.4 7.5 81 556-636 85-170 (664)
97 PHA02736 Viral ankyrin protein 99.1 2.1E-11 4.5E-16 116.3 2.6 89 551-639 15-118 (154)
98 TIGR00870 trp transient-recept 99.1 6.1E-11 1.3E-15 142.3 4.8 118 521-639 42-200 (743)
99 PF12796 Ank_2: Ankyrin repeat 99.1 1.4E-10 3E-15 99.4 4.6 65 546-611 20-89 (89)
100 TIGR00870 trp transient-recept 99.0 1.1E-10 2.4E-15 140.1 2.3 88 552-639 127-242 (743)
101 KOG1710 MYND Zn-finger and ank 99.0 3.6E-10 7.7E-15 110.8 5.1 87 553-639 45-137 (396)
102 cd00204 ANK ankyrin repeats; 99.0 4.6E-10 1E-14 102.1 4.8 87 553-639 7-98 (126)
103 PHA02792 ankyrin-like protein; 98.9 7.9E-10 1.7E-14 124.3 6.2 85 555-639 341-435 (631)
104 KOG3676 Ca2+-permeable cation 98.9 3.2E-10 7E-15 126.7 2.8 85 553-637 240-331 (782)
105 KOG1113 cAMP-dependent protein 98.9 1.9E-09 4E-14 109.7 7.4 117 366-485 236-352 (368)
106 KOG0506 Glutaminase (contains 98.9 5.6E-10 1.2E-14 116.3 3.1 84 556-639 509-598 (622)
107 KOG1710 MYND Zn-finger and ank 98.9 1E-09 2.2E-14 107.7 4.7 78 562-639 22-104 (396)
108 cd00204 ANK ankyrin repeats; 98.9 3.4E-09 7.3E-14 96.4 7.4 108 527-634 3-126 (126)
109 PF13637 Ank_4: Ankyrin repeat 98.9 1.3E-09 2.9E-14 83.4 3.5 49 553-601 1-54 (54)
110 COG0666 Arp FOG: Ankyrin repea 98.9 4.3E-09 9.3E-14 106.7 7.5 87 553-639 73-172 (235)
111 COG0666 Arp FOG: Ankyrin repea 98.8 4.8E-09 1E-13 106.3 7.2 95 543-637 93-203 (235)
112 KOG0507 CASK-interacting adapt 98.8 1.4E-09 3E-14 120.0 3.3 114 523-636 41-170 (854)
113 PF13606 Ank_3: Ankyrin repeat 98.8 4.4E-09 9.6E-14 69.1 4.0 30 580-609 1-30 (30)
114 KOG0507 CASK-interacting adapt 98.8 1.6E-09 3.4E-14 119.6 2.7 88 552-639 48-140 (854)
115 PRK10537 voltage-gated potassi 98.8 1.8E-07 3.9E-12 101.8 17.8 54 246-299 168-221 (393)
116 PF00023 Ank: Ankyrin repeat H 98.8 9.9E-09 2.1E-13 69.6 4.4 33 580-612 1-33 (33)
117 KOG3676 Ca2+-permeable cation 98.7 8.8E-09 1.9E-13 115.4 4.5 87 553-639 184-298 (782)
118 KOG0515 p53-interacting protei 98.7 1.1E-08 2.3E-13 108.1 3.5 87 553-639 583-677 (752)
119 KOG0522 Ankyrin repeat protein 98.6 2.7E-08 5.8E-13 106.2 5.6 80 557-636 24-110 (560)
120 KOG0705 GTPase-activating prot 98.6 6.8E-08 1.5E-12 103.3 6.6 74 567-640 643-720 (749)
121 PTZ00322 6-phosphofructo-2-kin 98.5 1.4E-07 3E-12 110.9 6.4 70 553-622 115-196 (664)
122 KOG2968 Predicted esterase of 98.5 1.6E-07 3.5E-12 105.5 5.9 116 384-499 499-615 (1158)
123 KOG2384 Major histocompatibili 98.5 2.8E-07 6.2E-12 85.6 6.4 67 571-637 2-69 (223)
124 KOG0783 Uncharacterized conser 98.4 1.2E-07 2.6E-12 105.3 1.3 70 553-622 52-127 (1267)
125 KOG0783 Uncharacterized conser 98.3 2.4E-07 5.3E-12 102.9 2.1 66 574-639 45-111 (1267)
126 PF08412 Ion_trans_N: Ion tran 98.3 6.7E-07 1.4E-11 72.1 3.1 60 28-87 12-74 (77)
127 PF13857 Ank_5: Ankyrin repeat 98.2 5.1E-07 1.1E-11 69.5 1.5 40 600-639 1-41 (56)
128 KOG3684 Ca2+-activated K+ chan 98.2 0.00018 4E-09 76.3 20.4 91 243-341 284-374 (489)
129 KOG4369 RTK signaling protein 98.2 1E-06 2.2E-11 100.7 3.6 89 554-642 758-852 (2131)
130 KOG4369 RTK signaling protein 98.1 1.5E-06 3.2E-11 99.4 4.2 119 521-639 780-917 (2131)
131 KOG0521 Putative GTPase activa 98.1 1.7E-06 3.8E-11 101.0 2.9 84 553-636 656-744 (785)
132 KOG0782 Predicted diacylglycer 98.0 3.3E-06 7.2E-11 90.1 3.3 83 555-637 901-990 (1004)
133 PF01007 IRK: Inward rectifier 97.9 2.2E-05 4.7E-10 83.4 8.2 90 203-299 43-139 (336)
134 PF13606 Ank_3: Ankyrin repeat 97.9 7.5E-06 1.6E-10 53.7 2.1 27 613-639 1-27 (30)
135 KOG2302 T-type voltage-gated C 97.9 0.00057 1.2E-08 78.0 17.7 87 45-143 1100-1200(1956)
136 KOG1418 Tandem pore domain K+ 97.8 9.3E-05 2E-09 83.1 11.7 57 246-302 115-171 (433)
137 KOG2968 Predicted esterase of 97.8 0.00012 2.5E-09 83.3 11.2 112 388-499 110-229 (1158)
138 KOG0520 Uncharacterized conser 97.7 6.4E-05 1.4E-09 87.4 8.0 84 553-636 608-702 (975)
139 KOG0511 Ankyrin repeat protein 97.6 5.2E-05 1.1E-09 77.9 4.7 79 556-637 39-122 (516)
140 PF00023 Ank: Ankyrin repeat H 97.6 3.3E-05 7.1E-10 52.1 1.7 27 613-639 1-27 (33)
141 KOG4404 Tandem pore domain K+ 97.6 0.00021 4.7E-09 72.5 8.2 58 246-303 186-251 (350)
142 PLN03223 Polycystin cation cha 97.6 0.0079 1.7E-07 72.1 21.7 57 53-109 1169-1233(1634)
143 KOG0511 Ankyrin repeat protein 97.5 0.00013 2.8E-09 75.0 5.5 58 582-639 37-94 (516)
144 PRK11832 putative DNA-binding 97.5 0.0027 5.8E-08 62.1 13.6 111 385-499 14-125 (207)
145 KOG0521 Putative GTPase activa 97.4 9.3E-05 2E-09 86.8 3.7 73 567-639 640-714 (785)
146 KOG0782 Predicted diacylglycer 97.3 0.00011 2.4E-09 78.8 1.6 83 557-639 871-959 (1004)
147 PF04831 Popeye: Popeye protei 97.2 0.01 2.2E-07 54.2 13.9 112 380-495 14-132 (153)
148 KOG3193 K+ channel subunit [In 97.2 0.00067 1.4E-08 72.8 6.2 51 247-297 218-268 (1087)
149 KOG0818 GTPase-activating prot 97.1 0.00047 1E-08 73.3 4.4 51 553-603 167-222 (669)
150 KOG0520 Uncharacterized conser 97.0 0.0003 6.4E-09 82.0 1.5 92 547-639 568-666 (975)
151 KOG4404 Tandem pore domain K+ 96.9 0.001 2.2E-08 67.7 4.9 51 246-296 80-130 (350)
152 KOG2505 Ankyrin repeat protein 96.8 0.0016 3.4E-08 69.7 5.5 59 575-636 424-482 (591)
153 KOG0705 GTPase-activating prot 96.8 0.001 2.3E-08 72.1 3.8 56 553-608 661-721 (749)
154 smart00248 ANK ankyrin repeats 96.8 0.0023 5.1E-08 40.5 4.1 29 580-608 1-29 (30)
155 KOG3827 Inward rectifier K+ ch 96.6 0.013 2.7E-07 61.5 10.3 92 201-299 69-167 (400)
156 KOG0506 Glutaminase (contains 96.6 0.0015 3.3E-08 69.3 3.5 77 507-604 513-596 (622)
157 KOG0522 Ankyrin repeat protein 96.3 0.0036 7.8E-08 67.9 4.0 51 553-603 55-110 (560)
158 KOG3609 Receptor-activated Ca2 96.2 0.0039 8.5E-08 71.5 4.2 62 584-645 91-162 (822)
159 KOG2384 Major histocompatibili 96.0 0.01 2.2E-07 55.9 5.0 72 546-617 2-82 (223)
160 KOG2301 Voltage-gated Ca2+ cha 95.1 0.2 4.4E-06 63.3 13.1 141 91-262 475-618 (1592)
161 KOG1418 Tandem pore domain K+ 95.0 0.0085 1.8E-07 67.2 0.9 47 246-292 242-296 (433)
162 KOG3542 cAMP-regulated guanine 94.2 0.1 2.2E-06 58.0 6.7 111 367-481 278-390 (1283)
163 smart00537 DCX Domain in the D 93.9 0.23 5.1E-06 42.0 7.1 70 700-774 4-80 (89)
164 KOG3609 Receptor-activated Ca2 93.9 0.045 9.7E-07 63.1 3.5 90 522-611 53-161 (822)
165 KOG3614 Ca2+/Mg2+-permeable ca 93.8 4.1 9E-05 50.0 19.4 85 56-148 790-874 (1381)
166 smart00248 ANK ankyrin repeats 93.7 0.051 1.1E-06 34.0 2.2 27 613-639 1-27 (30)
167 KOG2302 T-type voltage-gated C 93.2 2.7 5.8E-05 49.5 15.8 73 61-146 80-159 (1956)
168 KOG2301 Voltage-gated Ca2+ cha 92.9 0.79 1.7E-05 58.3 12.2 108 61-185 841-952 (1592)
169 PF03607 DCX: Doublecortin; I 91.5 0.3 6.4E-06 37.9 4.0 45 729-774 10-55 (60)
170 KOG3599 Ca2+-modulated nonsele 89.1 50 0.0011 39.8 21.6 22 89-110 498-519 (798)
171 KOG3542 cAMP-regulated guanine 88.7 0.59 1.3E-05 52.3 4.9 89 371-471 38-126 (1283)
172 PF00060 Lig_chan: Ligand-gate 88.6 0.81 1.8E-05 42.7 5.4 60 242-302 40-99 (148)
173 PF08016 PKD_channel: Polycyst 88.6 23 0.0005 39.6 17.9 53 58-110 209-263 (425)
174 cd01615 CIDE_N CIDE_N domain, 88.5 0.89 1.9E-05 37.0 4.6 55 722-777 15-74 (78)
175 smart00266 CAD Domains present 87.5 1.1 2.5E-05 35.9 4.6 42 723-764 14-57 (74)
176 cd01617 DCX Ubiquitin-like dom 87.4 2.4 5.1E-05 35.1 6.8 66 702-772 1-73 (80)
177 PF00520 Ion_trans: Ion transp 87.4 3.1 6.7E-05 40.5 9.1 59 164-222 65-124 (200)
178 PF02017 CIDE-N: CIDE-N domain 87.2 1.6 3.4E-05 35.6 5.3 54 723-777 16-74 (78)
179 cd06538 CIDE_N_FSP27 CIDE_N do 87.0 1.6 3.5E-05 35.5 5.3 56 723-778 16-74 (79)
180 cd06539 CIDE_N_A CIDE_N domain 85.1 2.1 4.5E-05 34.7 5.0 50 723-772 16-70 (78)
181 cd06537 CIDE_N_B CIDE_N domain 83.7 2.7 5.9E-05 34.2 5.1 52 722-773 15-70 (81)
182 cd06536 CIDE_N_ICAD CIDE_N dom 83.5 2.2 4.7E-05 34.9 4.5 50 723-772 16-72 (80)
183 PF06128 Shigella_OspC: Shigel 76.5 3.2 6.9E-05 40.8 3.9 47 593-639 229-279 (284)
184 cd06535 CIDE_N_CAD CIDE_N doma 74.4 5.6 0.00012 32.2 4.2 55 723-778 16-74 (77)
185 KOG0498 K+-channel ERG and rel 74.3 1.9E+02 0.0042 34.5 18.4 43 597-639 592-634 (727)
186 PF08006 DUF1700: Protein of u 71.4 17 0.00036 35.3 7.8 56 311-368 5-65 (181)
187 COG4709 Predicted membrane pro 70.8 18 0.0004 34.6 7.4 76 311-388 5-85 (195)
188 PF07883 Cupin_2: Cupin domain 68.8 17 0.00038 28.5 6.2 66 396-469 3-69 (71)
189 KOG4440 NMDA selective glutama 65.2 14 0.0003 41.6 6.2 94 204-301 575-668 (993)
190 PLN03223 Polycystin cation cha 54.6 3.7E+02 0.008 34.3 15.8 15 131-145 1208-1223(1634)
191 PF06128 Shigella_OspC: Shigel 51.9 14 0.0003 36.5 3.1 41 567-607 236-280 (284)
192 KOG2505 Ankyrin repeat protein 51.7 16 0.00035 40.3 3.8 46 594-639 404-455 (591)
193 PF03158 DUF249: Multigene fam 51.4 14 0.0003 35.4 2.9 46 584-635 146-191 (192)
194 PF11929 DUF3447: Domain of un 50.8 12 0.00026 30.5 2.2 47 583-636 8-54 (76)
195 smart00835 Cupin_1 Cupin. This 48.7 39 0.00084 31.4 5.6 54 393-446 32-87 (146)
196 KOG1709 Guanidinoacetate methy 42.2 15 0.00032 36.2 1.7 39 568-606 2-40 (271)
197 KOG0513 Ca2+-independent phosp 41.1 10 0.00022 42.9 0.5 25 570-594 158-182 (503)
198 KOG1052 Glutamate-gated kainat 39.7 60 0.0013 38.6 6.7 53 248-301 383-435 (656)
199 COG3212 Predicted membrane pro 38.9 44 0.00094 31.1 4.1 40 726-765 81-121 (144)
200 COG3718 IolB Uncharacterized e 38.6 76 0.0016 31.6 5.8 65 394-471 32-109 (270)
201 PRK13290 ectC L-ectoine syntha 38.4 1.2E+02 0.0025 27.5 6.8 68 395-470 39-106 (125)
202 PF10011 DUF2254: Predicted me 37.4 1.3E+02 0.0028 33.0 8.3 57 244-300 98-154 (371)
203 PF05899 Cupin_3: Protein of u 36.1 63 0.0014 26.1 4.3 30 412-445 26-55 (74)
204 KOG1053 Glutamate-gated NMDA-t 35.3 5.3E+02 0.012 31.3 12.6 49 251-301 616-664 (1258)
205 TIGR03037 anthran_nbaC 3-hydro 34.6 98 0.0021 29.2 5.7 57 411-473 48-104 (159)
206 PF07077 DUF1345: Protein of u 34.0 1.9E+02 0.0042 28.0 7.9 48 245-292 131-178 (180)
207 PF03671 Ufm1: Ubiquitin fold 33.0 1.3E+02 0.0028 24.1 5.1 39 720-758 16-57 (76)
208 PF14377 DUF4414: Domain of un 30.5 1E+02 0.0022 27.0 5.0 44 323-366 51-105 (108)
209 KOG2378 cAMP-regulated guanine 29.9 46 0.001 36.4 3.1 45 440-484 1-46 (573)
210 TIGR00769 AAA ADP/ATP carrier 29.9 8E+02 0.017 27.8 13.2 53 206-286 124-177 (472)
211 PRK09108 type III secretion sy 29.3 6E+02 0.013 27.6 11.5 61 275-335 181-241 (353)
212 PF13314 DUF4083: Domain of un 29.1 2.2E+02 0.0047 21.8 5.5 11 309-319 44-54 (58)
213 PRK04190 glucose-6-phosphate i 28.9 1.9E+02 0.0041 28.4 6.9 50 395-445 72-131 (191)
214 TIGR00934 2a38euk potassium up 28.7 2.3E+02 0.005 34.0 8.7 121 183-314 435-565 (800)
215 PF07697 7TMR-HDED: 7TM-HD ext 27.4 4.3E+02 0.0092 26.1 9.7 59 353-412 146-207 (222)
216 KOG1054 Glutamate-gated AMPA-t 27.0 51 0.0011 37.3 2.8 53 247-300 596-648 (897)
217 TIGR00328 flhB flagellar biosy 26.7 5.8E+02 0.013 27.6 10.8 60 276-335 180-239 (347)
218 PRK12721 secretion system appa 25.6 6.1E+02 0.013 27.5 10.7 61 275-335 179-239 (349)
219 cd01766 Ufm1 Urm1-like ubiquit 24.8 1.3E+02 0.0028 24.1 3.9 39 720-758 16-57 (82)
220 PRK13264 3-hydroxyanthranilate 24.8 1.8E+02 0.0038 28.1 5.7 59 409-473 52-110 (177)
221 TIGR00933 2a38 potassium uptak 24.6 2.2E+02 0.0048 31.4 7.5 43 245-287 230-274 (390)
222 PRK07668 hypothetical protein; 24.4 2.4E+02 0.0053 28.9 7.0 59 308-366 5-66 (254)
223 TIGR03404 bicupin_oxalic bicup 23.9 1.6E+02 0.0035 32.2 6.1 51 395-445 71-121 (367)
224 PF14377 DUF4414: Domain of un 23.9 1.3E+02 0.0028 26.4 4.4 47 324-370 8-68 (108)
225 KOG3713 Voltage-gated K+ chann 23.8 2.6E+02 0.0057 31.3 7.5 19 91-109 275-293 (477)
226 COG1917 Uncharacterized conser 23.6 1.4E+02 0.003 26.9 4.8 50 393-447 45-95 (131)
227 KOG1709 Guanidinoacetate methy 23.2 90 0.002 31.0 3.4 40 600-639 1-40 (271)
228 cd00565 ThiS ThiaminS ubiquiti 22.8 2.2E+02 0.0048 22.1 5.1 50 720-773 5-60 (65)
229 KOG3300 NADH:ubiquinone oxidor 22.7 2.1E+02 0.0047 25.7 5.3 43 315-357 64-106 (146)
230 PRK12468 flhB flagellar biosyn 21.6 7.5E+02 0.016 27.2 10.6 47 289-335 200-246 (386)
231 COG0662 {ManC} Mannose-6-phosp 21.5 1.8E+02 0.0039 26.2 5.0 48 392-444 37-85 (127)
232 TIGR01404 FlhB_rel_III type II 21.5 7.9E+02 0.017 26.5 10.7 61 276-336 179-239 (342)
233 PF00190 Cupin_1: Cupin; Inte 21.2 1.4E+02 0.0031 27.4 4.4 53 394-446 37-96 (144)
234 TIGR01683 thiS thiamine biosyn 20.8 3E+02 0.0065 21.3 5.5 49 720-773 4-59 (64)
235 PRK08156 type III secretion sy 20.7 1E+03 0.022 26.0 11.2 51 285-335 184-234 (361)
236 PF13120 DUF3974: Domain of un 20.6 3E+02 0.0065 23.1 5.4 27 327-353 56-83 (126)
237 TIGR03404 bicupin_oxalic bicup 20.6 1.9E+02 0.0042 31.5 5.9 51 393-444 247-299 (367)
238 smart00511 ORANGE Orange domai 20.3 2.9E+02 0.0063 19.7 4.9 35 307-341 5-40 (45)
No 1
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=3.1e-114 Score=1032.97 Aligned_cols=744 Identities=44% Similarity=0.699 Sum_probs=632.5
Q ss_pred cccCCCCCCCcchhh--chhhhccCCcEeCCCChhHHHHHHHHHHHHHHHHHHHhhhhhcccCCC-ccchhHHHHHHHHH
Q 003951 26 GSFLSSDLLPSLGAR--INQATKLRRYIISPFNPRYRAWEMWLVVLVVYSAWICPFEFAFLTYKK-DALLIIDNIVNGFF 102 (784)
Q Consensus 26 ~~~~~~~~~~~~~~~--~~~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~p~~~~F~~~~~-~~~~~~~~~~~~~f 102 (784)
..++|+.++|++|++ .++..+.++|+|+|+++++++|+++++++++|++|++||+++|....+ ..++++|++++++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i~~~~F 105 (823)
T PLN03192 26 LRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDLFF 105 (823)
T ss_pred hhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHHHHHHH
Confidence 447899999999998 356668999999999999999999999999999999999999975443 46789999999999
Q ss_pred HHhhheeeeEeEEeCCCeEEeeChHHHHHHHhhhhhHHHhhhccchHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHH
Q 003951 103 AIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMSTWFIFDVCSTAPLQFLALLLTNN-ISELTFRLLNMLRLWRLRRVSSL 181 (784)
Q Consensus 103 ~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~-~~~~~~~il~llrllRl~r~~~~ 181 (784)
++||+++|+++|++++++.+|+||++|+++|+++||++|++|++|++++...+... .....+.+++++|++|+.|+.++
T Consensus 106 ~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~ 185 (823)
T PLN03192 106 AVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQL 185 (823)
T ss_pred HHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999899999999999999999999999999998876555432 22245778999999999999999
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhcccc
Q 003951 182 FARLEKDIRFNYFWTRCTKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTT 261 (784)
Q Consensus 182 ~~~l~~~~~~~~~~~~~~~li~~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTv 261 (784)
+.++++..++++.+.+++++++++++++||+||+||+++..++.++.+|++...+++.+.++|.+|+.|+||+++|||||
T Consensus 186 ~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTV 265 (823)
T PLN03192 186 FTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTV 265 (823)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999987777888999987788999999999999999999999999
Q ss_pred ccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 003951 262 GYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLSHICLKF 341 (784)
Q Consensus 262 GyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~~~~~~~ 341 (784)
||||++|.|..|++|++++|++|+++|||++|+|++++.+.++++++|+++++.+++||+++++|+++|+||++|++++|
T Consensus 266 GYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~ 345 (823)
T PLN03192 266 GYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRF 345 (823)
T ss_pred cCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHhcCCHHHHHHHHHHhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecE
Q 003951 342 KTEGLKQQETLVGLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGA 421 (784)
Q Consensus 342 ~~~~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~ 421 (784)
+.++.+++++++.||++||.+|.++++.++++++++|+++|++++.+|+..+++++|+|||.|+.+||.++++|||++|+
T Consensus 346 ~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~ 425 (823)
T PLN03192 346 KAESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGE 425 (823)
T ss_pred hhccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecE
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhc
Q 003951 422 VDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQE 501 (784)
Q Consensus 422 v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~ 501 (784)
|+++...+|++.++..+++|++|||.+++++.|++++++|.+.|++++|++++|.++++.+|++...+++++.+++++.+
T Consensus 426 V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~ 505 (823)
T PLN03192 426 VEIIDSEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELH 505 (823)
T ss_pred EEEEEecCCcceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhhhc
Confidence 99997677888899999999999999999999999999999999999999999999999999999999999999887755
Q ss_pred ccccc---------------------CCCCChhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccc
Q 003951 502 SIGFE---------------------YPTTDPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLN 550 (784)
Q Consensus 502 ~~~~~---------------------~~~~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~ 550 (784)
++... ++..++...++.++ |+|+|..|.+|+||||.|.. .+++.|++++
T Consensus 506 ~l~v~~ll~~~~~~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin 585 (823)
T PLN03192 506 DLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH 585 (823)
T ss_pred cccHHHHHhhcccccCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC
Confidence 43211 22335666677777 89999999999999998543 3567788887
Q ss_pred cc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhc
Q 003951 551 FL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAE 622 (784)
Q Consensus 551 ~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 622 (784)
.. |.||+|.|| .++.+ |++.|+..+ +.+|.||||.||..|+.+++++|+++|||+|.+|.+|+||||+|+
T Consensus 586 ~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~ 663 (823)
T PLN03192 586 IRDANGNTALWNAISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAM 663 (823)
T ss_pred CcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 76 999999999 56666 666666544 356789999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHhcCCCCCCCccccccCCCcccc-cccccccccCccCCCCCcCccchhh-cccCCCccCC---CCCccc
Q 003951 623 QPVNRSMYDLLLSYENRTPDEHKVEIMGPEISDN-IWNTRRKHRRHEWPDVSKSHSKRES-IKLGSCISSC---SSGEVN 697 (784)
Q Consensus 623 ~~g~~~i~~lL~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~s~~---~~~~~~ 697 (784)
..||.+++++|+++||+......-. ...+.+ .+..+..+.... ........... ....+..+.. ......
T Consensus 664 ~~g~~~iv~~Ll~~GAdv~~~~~~g---~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (823)
T PLN03192 664 AEDHVDMVRLLIMNGADVDKANTDD---DFSPTELRELLQKRELGHS--ITIVDSVPADEPDLGRDGGSRPGRLQGTSSD 738 (823)
T ss_pred HCCcHHHHHHHHHcCCCCCCCCCCC---CCCHHHHHHHHHHhhhCce--eeeccCCCccccccccccccccccccccccc
Confidence 9999999999999999832211100 000000 000000000000 00000000000 0000000000 011122
Q ss_pred CCCcceEEEeCCCCCCccc--cccCcEEEEccccHHHHHHHHhhhcCCC-cceeeeeCCCceeeeeeeeecCCEEEEEec
Q 003951 698 KSNKKRITIHMPYQNTRTS--QRHLGKLIVLPDSIEELLRIAGEKFGGY-KFTKVVNAENAEIDDICVIRDGDHLFLLQN 774 (784)
Q Consensus 698 ~~~~~Rvti~~~~~~~~~~--~~~~gk~~~~p~s~~ell~~a~~~~~~~-~~~~~~~~~ga~id~i~~ird~~~l~~~~~ 774 (784)
.....|++++..||..... ..+.|+++++|.|++||.++|++|||+. .-+.+.++||||||||+|||||||||+|++
T Consensus 739 ~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (823)
T PLN03192 739 NQCRPRVSIYKGHPLLRNERCCNEAGKLINLPPSLEELKAIAGEKLGFDARKAMVTNEEGAEIDSIEVIRDNDKLFVVED 818 (823)
T ss_pred cccCceEEEecCCCcccccccccccCeEEeCCccHHHHHHHHHHHhCCCcccceeecCCCceeeeeEEEecCCEEEEeec
Confidence 3335699999999965533 5689999999999999999999999953 334689999999999999999999999988
Q ss_pred CC
Q 003951 775 EG 776 (784)
Q Consensus 775 ~~ 776 (784)
++
T Consensus 819 ~~ 820 (823)
T PLN03192 819 ED 820 (823)
T ss_pred cc
Confidence 54
No 2
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-88 Score=753.49 Aligned_cols=565 Identities=35% Similarity=0.561 Sum_probs=480.5
Q ss_pred cccCCCCCCC---cchhhchhhhccCCcEeCCCChhHHHHHHHHHHHHHHHHHHHhhhhhcccC----------CCccch
Q 003951 26 GSFLSSDLLP---SLGARINQATKLRRYIISPFNPRYRAWEMWLVVLVVYSAWICPFEFAFLTY----------KKDALL 92 (784)
Q Consensus 26 ~~~~~~~~~~---~~~~~~~~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~p~~~~F~~~----------~~~~~~ 92 (784)
.+..+.+.++ .+..+..+..+...+|++|+|++++.|+.+++++++|++|+.|++++|... ....+.
T Consensus 41 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~ 120 (727)
T KOG0498|consen 41 VNSLSLGLLPLGLGVPEYKERVDKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLT 120 (727)
T ss_pred cccccccccccccCcchhhcccccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCcee
Confidence 4456666666 344445566778888999999999999999999999999999999998766 446789
Q ss_pred hHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhhhhhHHHhhhccchHHHHHHHh------cCCchhHHHH
Q 003951 93 IIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMSTWFIFDVCSTAPLQFLALLLT------NNISELTFRL 166 (784)
Q Consensus 93 ~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~~~f~~Dlis~lP~~~i~~~~~------~~~~~~~~~i 166 (784)
++|.++|++|++||+++|+|+|.++.++++|.||++|++||+++||++|++|++|++.++.+.. .........+
T Consensus 121 v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~i 200 (727)
T KOG0498|consen 121 VLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGI 200 (727)
T ss_pred eHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998876655 2333346788
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCC-cccccc-----cC
Q 003951 167 LNMLRLWRLRRVSSLFARLEKDIRFNY--FWTRCTKLVAVTLFAVHCAGCFNYLIADRYP--DPEK-TWIGAV-----YP 236 (784)
Q Consensus 167 l~llrllRl~r~~~~~~~l~~~~~~~~--~~~~~~~li~~~l~~~h~~aci~y~i~~~~~--~~~~-~Wi~~~-----~~ 236 (784)
+.+.||+|++|+..+++++++...+++ .|.-+++++++.++++||+||+||+++..++ .+.. +|+... ..
T Consensus 201 l~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~ 280 (727)
T KOG0498|consen 201 LLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCY 280 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccC
Confidence 999999999999999999999988887 2444889999999999999999999998776 5566 999852 33
Q ss_pred C----CCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhHHHHHHH
Q 003951 237 N----FKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRET 312 (784)
Q Consensus 237 ~----~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~~~~~~~~ 312 (784)
+ +...+++.+|++|+||+++||||+|||+.+|+|+.|++|+|++|++|+++||++||||++++++.++++++|+.+
T Consensus 281 ~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k 360 (727)
T KOG0498|consen 281 NLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDK 360 (727)
T ss_pred cccccccchhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHH
Confidence 4 777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhh-cCCcHHHHHhcCCHHHHHHHHHHhhhhhhccccccccCCHHHHHHHHH
Q 003951 313 VRAVSEFATRNHLPPHIHDQMLSHICLKFKT-EGLKQQETLVGLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVS 391 (784)
Q Consensus 313 ~~~~~~~m~~~~l~~~l~~~v~~~~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~lf~~~s~~~l~~l~~ 391 (784)
++++++||++++||++||+||++|++++|+. +|++|+++|++||+.||++|+.|+|.++++++|+|+++|+.++.+|+.
T Consensus 361 ~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~ 440 (727)
T KOG0498|consen 361 MRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCS 440 (727)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHH
Confidence 9999999999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeee-hhhhhcC-CCceeEEEEccceEEEE
Q 003951 392 DMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG-EIGVLYY-RPQPFTVRTTELSQILR 469 (784)
Q Consensus 392 ~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG-e~~~l~~-~~~~~tv~a~~~~~l~~ 469 (784)
+++.++|+|||+|++|||+.++||||++|.+++....+|.+.+...+++||+|| |+...+. .|+++||||.|.|+++.
T Consensus 441 rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~ 520 (727)
T KOG0498|consen 441 RLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFR 520 (727)
T ss_pred HhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHh
Confidence 999999999999999999999999999999999977778888999999999999 8888888 89999999999999999
Q ss_pred ecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc-cCCCCCCCCCCCCCCCCCCCCccccccc
Q 003951 470 LSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI-GGPTIGSSLSARHQDYPYGDSSMWETRN 548 (784)
Q Consensus 470 l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll-g~~~~~~d~~g~t~l~~~~~~~~~~~~~ 548 (784)
|++++|..+++.||.+...++++...-+..+..... ++......-+... ....+..-. ....+... +.
T Consensus 521 L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~a--a~~iq~a~r~~~~~~~~~~l~~~--~~~~~~~~----~~--- 589 (727)
T KOG0498|consen 521 LSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWA--ACFIQAAWRRHIKRKGEEELALE--EEESAIRG----DD--- 589 (727)
T ss_pred ccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhh--hhhHHHHHHHHHHhhccchhhhh--cchhhhcc----cc---
Confidence 999999999999999999999865554433221110 1111000000000 000000000 00000000 00
Q ss_pred ccccCCCchhhhhhcCcccccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 003951 549 LNFLGPQATDIEASKDQDSTACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614 (784)
Q Consensus 549 ~~~~g~~~l~~a~~~~~~ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g 614 (784)
.+....++.+..++..+.+|++|+|.++..|...++..+++++++++..+..|
T Consensus 590 -------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~ 642 (727)
T KOG0498|consen 590 -------------RGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFSDAEG 642 (727)
T ss_pred -------------ccchhhhhcccccccccccCCCccccccccCccccccccCCCCCCCCcccccc
Confidence 00001567788889999999999999999999999999999999999998766
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-63 Score=516.21 Aligned_cols=474 Identities=23% Similarity=0.418 Sum_probs=403.9
Q ss_pred hhhhhhhhhccccccccc--ccccc-----cCCCCCCCcchhhchhhhccCCcEeCCCChhHHHHHHHHHHHHHHHHHHH
Q 003951 5 CAKNFFQRFCSDELHVES--VAHGS-----FLSSDLLPSLGARINQATKLRRYIISPFNPRYRAWEMWLVVLVVYSAWIC 77 (784)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~ 77 (784)
.++++.|.+. .++++.. .+|++ .+.++++|+.++ ..+|.+..||-.++.|+.+|+++++++.+|+++.+
T Consensus 160 ~sr~~~qq~t-~~l~k~~~~~khS~la~vm~Lg~DilPQYrQ---EaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimV 235 (971)
T KOG0501|consen 160 SSRQVLQQLT-PDLHKSEGVTKHSNLAEVMQLGSDILPQYRQ---EAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMV 235 (971)
T ss_pred hhhhHHHHhC-cccccCCCCccchhHHHHHHhccccchhhhh---cCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHhee
Confidence 3556666665 4454433 34444 578999999774 46789999999999999999999999999999999
Q ss_pred hhhhhcccCCC--ccchhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhhhhhHHHhhhccchHHHHHHH
Q 003951 78 PFEFAFLTYKK--DALLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMSTWFIFDVCSTAPLQFLALLL 155 (784)
Q Consensus 78 p~~~~F~~~~~--~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~~~f~~Dlis~lP~~~i~~~~ 155 (784)
||.++|..... ..|.++|-++|++|++||+++|+|.|.-+|+ ++|.||+.|+.+|+|+||++|++|++|++++. .|
T Consensus 236 PyNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgG-EVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~n-aF 313 (971)
T KOG0501|consen 236 PYNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGG-EVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFN-AF 313 (971)
T ss_pred eeeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecCCC-ceecChhHHhHHHHHHHHHHHHHhcccHHHHH-Hh
Confidence 99999987653 5688999999999999999999999999986 79999999999999999999999999998764 44
Q ss_pred hcCCch--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------C
Q 003951 156 TNNISE--LTFRLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLVAVTLFAVHCAGCFNYLIADRYPD-------P 226 (784)
Q Consensus 156 ~~~~~~--~~~~il~llrllRl~r~~~~~~~l~~~~~~~~~~~~~~~li~~~l~~~h~~aci~y~i~~~~~~-------~ 226 (784)
...... ..|.-++..||+||-|+.+.++.+ +.|..--++.|+++..+++||.||+||.|++..-. .
T Consensus 314 ~~~degI~SLFSaLKVVRLLRLGRVaRKLD~Y-----lEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~ 388 (971)
T KOG0501|consen 314 ERDDEGIGSLFSALKVVRLLRLGRVARKLDHY-----LEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQ 388 (971)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccc
Confidence 433222 246667778888888777766543 23444557778889999999999999999964311 2
Q ss_pred CCcccccccC--------CCC-------CCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHH
Q 003951 227 EKTWIGAVYP--------NFK-------EETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYI 291 (784)
Q Consensus 227 ~~~Wi~~~~~--------~~~-------~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ 291 (784)
.++|+..... +.. +.+--..|+.|+||.++.|||||+|++.|.|..|++|++++|++|..+||-+
T Consensus 389 ~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtI 468 (971)
T KOG0501|consen 389 PDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATI 468 (971)
T ss_pred cchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 3578743211 111 2234467999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-hhcCCcHHHHHhcCCHHHHHHHHHHhhhh
Q 003951 292 IGNMTNLVVHWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLSHICLKF-KTEGLKQQETLVGLPKAIRSSIAHYLFFP 370 (784)
Q Consensus 292 ig~i~~ii~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~~~~~~~-~~~~~~~~~~l~~Lp~~Lr~~i~~~~~~~ 370 (784)
+|+++.+++++++.+.+|++.++.+.+||+-.++|..|-+||.+|.--.| -++|++.+++|+-.|+.+|.+|+.+++++
T Consensus 469 FG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRK 548 (971)
T KOG0501|consen 469 FGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRK 548 (971)
T ss_pred HhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchh
Confidence 99999999999999999999999999999999999999999999999999 46899999999999999999999999999
Q ss_pred hhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhh
Q 003951 371 IVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVL 450 (784)
Q Consensus 371 ~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l 450 (784)
.++.+|.|+-.|+.+++.|+..++.....||+.|+..||..+.++||++|.++++. .+.+++.+++||+||..-.=
T Consensus 549 VFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQ----DDEVVAILGKGDVFGD~FWK 624 (971)
T KOG0501|consen 549 VFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQ----DDEVVAILGKGDVFGDEFWK 624 (971)
T ss_pred hhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEee----cCcEEEEeecCccchhHHhh
Confidence 99999999999999999999999999999999999999999999999999999984 23478999999999986433
Q ss_pred cC--CCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHH
Q 003951 451 YY--RPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNL 493 (784)
Q Consensus 451 ~~--~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l 493 (784)
.. ....+++||.++|.+..|.|+.++++++-|..++.-+.+++
T Consensus 625 ~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl 669 (971)
T KOG0501|consen 625 ENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNL 669 (971)
T ss_pred hhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhce
Confidence 22 13457899999999999999999999999988877666554
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-62 Score=501.77 Aligned_cols=415 Identities=23% Similarity=0.389 Sum_probs=368.5
Q ss_pred HHHHHHHHHHHHhhhhhcccCCC---ccchhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhh-hhhHHH
Q 003951 66 LVVLVVYSAWICPFEFAFLTYKK---DALLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMS-TWFIFD 141 (784)
Q Consensus 66 ~~~~~~~~~~~~p~~~~F~~~~~---~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~-~~f~~D 141 (784)
+.+.++|+.++++...+|..-.. ..|..+|+++|++|++|++++.+++|+++| .+|+|-.+.++||+. ..|.+|
T Consensus 3 vs~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqG--llV~~~~Kl~~hY~~s~~f~lD 80 (536)
T KOG0500|consen 3 VSLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQG--LLVKDTSKLRKHYVHSTQFKLD 80 (536)
T ss_pred EEEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcC--eeehhhHHHHHHHHHhhhhhhh
Confidence 34568999999999888876544 457899999999999999999999999998 799999999999995 459999
Q ss_pred hhhccchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003951 142 VCSTAPLQFLALLLTNNISELTFRLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLVAVTLFAVHCAGCFNYLIAD 221 (784)
Q Consensus 142 lis~lP~~~i~~~~~~~~~~~~~~il~llrllRl~r~~~~~~~l~~~~~~~~~~~~~~~li~~~l~~~h~~aci~y~i~~ 221 (784)
++|++|++++.+..+. ....|++|++|+.|+..++.+-+...... ...++.+++..++.++||.||+||+++.
T Consensus 81 ~l~liP~D~l~~~~~~------~~~~r~nRllk~yRl~~F~~rTetrT~~P-n~fri~~lv~~~~ilfHWNaClYf~iS~ 153 (536)
T KOG0500|consen 81 VLSLIPLDLLLFKDGS------ASLERLNRLLKIYRLFEFFDRTETRTTYP-NAFRISKLVHYCLILFHWNACLYFLISK 153 (536)
T ss_pred hhhhcchhHHhhcCCc------chHHHHHHHHHHHHHHHHHHHhccccCCc-hHHHHHHHHHHHHHHHHHhhHHHHhhhH
Confidence 9999999987654433 23567899999999999999887754432 3568999999999999999999999998
Q ss_pred cCCCCCCcccccccC-----CCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHH
Q 003951 222 RYPDPEKTWIGAVYP-----NFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMT 296 (784)
Q Consensus 222 ~~~~~~~~Wi~~~~~-----~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~ 296 (784)
......++|...... .....++..+|+.|+|||..||||+| -...|.+..|.+|.|+=.++|+.+||.++|+++
T Consensus 154 ~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VG 232 (536)
T KOG0500|consen 154 AIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVG 232 (536)
T ss_pred hcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHh
Confidence 777777889864221 22234588999999999999999999 467899999999999999999999999999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhc-CCcHHHHHhcCCHHHHHHHHHHhhhhhhccc
Q 003951 297 NLVVHWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLSHICLKFKTE-GLKQQETLVGLPKAIRSSIAHYLFFPIVQNV 375 (784)
Q Consensus 297 ~ii~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~~~~~~~~~~-~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~ 375 (784)
+++.+++....+|+.+|+.+++||+.+++|..++.||.+|+.|.|.++ -.+++++++.||+.|+.+|+..++.+.|+++
T Consensus 233 smVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV 312 (536)
T KOG0500|consen 233 SMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKV 312 (536)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999654 4689999999999999999999999999999
Q ss_pred cccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhc----
Q 003951 376 YLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLY---- 451 (784)
Q Consensus 376 ~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~---- 451 (784)
++|+.+...++.+|+..++++.|.||++|+++||.+.+||||.+|.++++. +||. .+...+.+|++|||++++.
T Consensus 313 ~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~-dDg~-t~~~~L~~G~~FGEisIlni~g~ 390 (536)
T KOG0500|consen 313 RIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA-DDGV-TVFVTLKAGSVFGEISILNIKGN 390 (536)
T ss_pred hHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe-cCCc-EEEEEecCCceeeeeEEEEEcCc
Confidence 999999999999999999999999999999999999999999999999985 3443 4578899999999999763
Q ss_pred --CCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHH
Q 003951 452 --YRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNN 492 (784)
Q Consensus 452 --~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~ 492 (784)
+..|++++|++.+|++++|+++|+.+++++||+....+..+
T Consensus 391 ~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 391 KNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred ccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 56789999999999999999999999999999988776644
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1e-55 Score=461.53 Aligned_cols=433 Identities=20% Similarity=0.357 Sum_probs=387.6
Q ss_pred cEeCCCC-hhHHHHHHHHHHHHHHHHHHHhhhhhcccCCC---ccchhHHHHHHHHHHHhhhe-eeeEeEEeCCCeEEee
Q 003951 50 YIISPFN-PRYRAWEMWLVVLVVYSAWICPFEFAFLTYKK---DALLIIDNIVNGFFAIDIIL-TFFVAYLDSQSYLLVD 124 (784)
Q Consensus 50 ~ii~P~s-~~~~~W~~~~~~~~~~~~~~~p~~~~F~~~~~---~~~~~~~~~~~~~f~iDi~l-~f~t~y~~~~~~~~v~ 124 (784)
..|+|+. +++..|-+++.+...|++|++|+..+|..+.. ..|++.|++||+++++|+++ +-+.-|...| .+|.
T Consensus 218 ~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG--~~ik 295 (815)
T KOG0499|consen 218 NSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGG--DIIK 295 (815)
T ss_pred cccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCc--eEEE
Confidence 4689997 99999999999999999999999999977654 45789999999999999976 3344555544 6899
Q ss_pred ChHHHHHHHhhh-hhHHHhhhccchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 003951 125 DPKKIAIRYMST-WFIFDVCSTAPLQFLALLLTNNISELTFRLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLVA 203 (784)
Q Consensus 125 ~~~~i~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~~~~~~~il~llrllRl~r~~~~~~~l~~~~~~~~~~~~~~~li~ 203 (784)
+.+..++||+++ .|-+|++|++|++++++.++.+. ++|+.|++++..++.++..++..+.- ...+|+++...
T Consensus 296 ~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~p------~wR~~R~lK~~sF~e~~~~Le~i~s~-~y~~RV~rT~~ 368 (815)
T KOG0499|consen 296 DKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFNP------MWRANRMLKYTSFFEFNHHLESIMSK-AYIYRVIRTTG 368 (815)
T ss_pred echHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccch------hhhhhhHHHHHHHHHHHHHHHHHhcc-hhhhhhHHHHH
Confidence 999999999965 59999999999999988877543 46888888888888888888776543 34579999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHH
Q 003951 204 VTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLF 283 (784)
Q Consensus 204 ~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~ 283 (784)
++++++|+.||+||+.+..+.-..+.|+.... ...|+.++||++-|++|+| |...|.|..|.+|..+--+.
T Consensus 369 YmlyilHinacvYY~~SayqglG~~rWVydg~--------Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~m 439 (815)
T KOG0499|consen 369 YLLYILHINACVYYWASAYQGLGTTRWVYDGE--------GNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFM 439 (815)
T ss_pred HHHHHHhhhHHHHHHHHhhcccccceeEEcCC--------CCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHH
Confidence 99999999999999998877777889986421 2469999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh-hcCCcHHHHHhcCCHHHHHH
Q 003951 284 NLGLTSYIIGNMTNLVVHWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLSHICLKFK-TEGLKQQETLVGLPKAIRSS 362 (784)
Q Consensus 284 g~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~~~~~~~~-~~~~~~~~~l~~Lp~~Lr~~ 362 (784)
|+++|+.+||+|-.++...+..+..|+..|+..-.||++.+||.+.|.||+.+|+|.|+ ++.+++.++++.||..++.+
T Consensus 440 GVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~d 519 (815)
T KOG0499|consen 440 GVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLD 519 (815)
T ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheee
Confidence 99999999999999999999999999999999999999999999999999999999995 46799999999999999999
Q ss_pred HHHHhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCC
Q 003951 363 IAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGD 442 (784)
Q Consensus 363 i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~ 442 (784)
++..++..++.++.+|++|+.+.+..++.+++...|.||++|+++||.+.+||||..|.|+|....+| ++++.++++|+
T Consensus 520 lAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~-~~Vl~tL~~Gs 598 (815)
T KOG0499|consen 520 LAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDG-TKVLVTLKAGS 598 (815)
T ss_pred eeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCC-CEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999965665 56889999999
Q ss_pred eeehhhhhc---CCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhc
Q 003951 443 AFGEIGVLY---YRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQE 501 (784)
Q Consensus 443 ~fGe~~~l~---~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~ 501 (784)
+|||++++. +..|+++++|.++|.+++|+++++.+++..||+-...+.+....-++.+.
T Consensus 599 VFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr~llk~na 660 (815)
T KOG0499|consen 599 VFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKARVLLKQNA 660 (815)
T ss_pred eeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHHHHHHHhcc
Confidence 999999764 46789999999999999999999999999999988888777777776644
No 6
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=99.91 E-value=3.6e-24 Score=167.22 Aligned_cols=69 Identities=59% Similarity=0.845 Sum_probs=63.9
Q ss_pred cceEEEeCCCCCCccccccCcEEEEccccHHHHHHHHhhhcCCCcceeeeeCCCceeeeeeeeecCCEEEEE
Q 003951 701 KKRITIHMPYQNTRTSQRHLGKLIVLPDSIEELLRIAGEKFGGYKFTKVVNAENAEIDDICVIRDGDHLFLL 772 (784)
Q Consensus 701 ~~Rvti~~~~~~~~~~~~~~gk~~~~p~s~~ell~~a~~~~~~~~~~~~~~~~ga~id~i~~ird~~~l~~~ 772 (784)
++|||||++|++.. ..+.||++++|+|++||+++|++|||+ .+++++++||||||||++||||||||++
T Consensus 1 ~~RVtI~~~~~~~~--~~~~GKvi~lP~SleeLl~ia~~kfg~-~~~~v~~~dgaeIdDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 1 PKRVTIFPNHPPEK--GRRAGKVIWLPDSLEELLKIASEKFGF-SATKVLNEDGAEIDDIDVIRDGDHLYLV 69 (69)
T ss_pred CcEEEEecCCCCcc--cCcCCEEEEcCccHHHHHHHHHHHhCC-CceEEEcCCCCEEeEEEEEEcCCEEEEC
Confidence 57999999999876 345799999999999999999999996 6999999999999999999999999985
No 7
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.88 E-value=9e-22 Score=207.46 Aligned_cols=241 Identities=17% Similarity=0.242 Sum_probs=165.8
Q ss_pred hchhhhccCCcEeCCCC-hhHHHHHHHHHHHHHHHHHHHhhhhh--ccc-----------------CCCccchhHHHHHH
Q 003951 40 RINQATKLRRYIISPFN-PRYRAWEMWLVVLVVYSAWICPFEFA--FLT-----------------YKKDALLIIDNIVN 99 (784)
Q Consensus 40 ~~~~~~~~~~~ii~P~s-~~~~~W~~~~~~~~~~~~~~~p~~~~--F~~-----------------~~~~~~~~~~~~~~ 99 (784)
..+.+.+++..+-.|.| ...++..++.+++++.+++..-+..- |.. .....+.++|.+|.
T Consensus 171 ~~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi 250 (477)
T KOG3713|consen 171 CGRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCI 250 (477)
T ss_pred hhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHH
Confidence 34477888899999995 45677777777777777665554321 111 11134789999999
Q ss_pred HHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhhhh-hHHHhhhccchHHHHHHHhcCC-ch-------hHHHHHHHH
Q 003951 100 GFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMSTW-FIFDVCSTAPLQFLALLLTNNI-SE-------LTFRLLNML 170 (784)
Q Consensus 100 ~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~~~-f~~Dlis~lP~~~i~~~~~~~~-~~-------~~~~il~ll 170 (784)
++|.+++++||..+ -++ .+++++. .++|+++++||++-..+..... +. ...+++|++
T Consensus 251 ~WFT~E~llR~~~~----------P~k----~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~l 316 (477)
T KOG3713|consen 251 AWFTFEYLLRFLVA----------PNK----LEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVL 316 (477)
T ss_pred HHHHHHHHHHHHcC----------chH----HHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHH
Confidence 99999999999554 233 3455443 5999999999965433221111 01 234556666
Q ss_pred HHHHHHHHHHHHHHhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHH
Q 003951 171 RLWRLRRVSSLFARLEKDI-RFNYFWTRCTKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVT 249 (784)
Q Consensus 171 rllRl~r~~~~~~~l~~~~-~~~~~~~~~~~li~~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~ 249 (784)
|++|++|+.+....++... .+......+..|++++.+.+-++|.+.|++++..+++. +++.-.
T Consensus 317 RI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~----------------FtSIPa 380 (477)
T KOG3713|consen 317 RILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTK----------------FTSIPA 380 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC----------------Cccccc
Confidence 6666666655555554321 12222345666666666777888999999886544332 344558
Q ss_pred HHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhHHHHH
Q 003951 250 AMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFR 310 (784)
Q Consensus 250 slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~~~~~~ 310 (784)
++|||++|||||||||++|.|..+++++..++++|+++.|..|..|.+-+.+.+++.+..+
T Consensus 381 ~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~ 441 (477)
T KOG3713|consen 381 GFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKARE 441 (477)
T ss_pred hhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888877776655554433
No 8
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.2e-21 Score=175.26 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=113.4
Q ss_pred Chhhhhhhhc---cCCCCCCCCCCCCCCCCCCCC--------ccc-cccccccc---CCCchhhhh-hcCcc----cccC
Q 003951 511 DPGIILHECI---GGPTIGSSLSARHQDYPYGDS--------SMW-ETRNLNFL---GPQATDIEA-SKDQD----STAC 570 (784)
Q Consensus 511 ~~~~~l~~Ll---g~~~~~~d~~g~t~l~~~~~~--------~~~-~~~~~~~~---g~~~l~~a~-~~~~~----ll~~ 570 (784)
+....+.-|+ +..++..|..|+||+|.+..+ ++. .+.+++.. |.|+||+|+ +|.++ |+++
T Consensus 49 g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ 128 (226)
T KOG4412|consen 49 GHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEK 128 (226)
T ss_pred CchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhc
Confidence 3444444444 778899999999999996542 233 37777776 999999999 88888 9999
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 571 PVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 571 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|+.++.+|..|.||||.||..|+++++++|+..||.+|.+|+.||||||.|...||.++..+|+.+||+
T Consensus 129 ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd 197 (226)
T KOG4412|consen 129 GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD 197 (226)
T ss_pred CCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998
No 9
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.7e-19 Score=188.43 Aligned_cols=247 Identities=17% Similarity=0.224 Sum_probs=152.7
Q ss_pred hhccCCcEeCCCChhHHHHHHHHHHHHHHHHHHHhhhhhcccC---CCccchhHHHHHHHHHHHhhheeeeEeEEeCCCe
Q 003951 44 ATKLRRYIISPFNPRYRAWEMWLVVLVVYSAWICPFEFAFLTY---KKDALLIIDNIVNGFFAIDIILTFFVAYLDSQSY 120 (784)
Q Consensus 44 ~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~p~~~~F~~~---~~~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~ 120 (784)
+.+.+.++..|.+.....++++++++++.++++..+.. +... ....++++|+++.+||.+++++|++.+=-+..
T Consensus 78 q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~ST-i~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~r-- 154 (654)
T KOG1419|consen 78 QNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLST-IEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCR-- 154 (654)
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--
Confidence 35678899999999899999999998888777665543 2221 23568999999999999999999987622211
Q ss_pred EEeeChHHHHHHHhhhh-hHHHhhhccchHHHHHHHhcCCchh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH-
Q 003951 121 LLVDDPKKIAIRYMSTW-FIFDVCSTAPLQFLALLLTNNISEL---TFRLLNMLRLWRLRRVSSLFARLEKDIRFNYFW- 195 (784)
Q Consensus 121 ~~v~~~~~i~~~Yl~~~-f~~Dlis~lP~~~i~~~~~~~~~~~---~~~il~llrllRl~r~~~~~~~l~~~~~~~~~~- 195 (784)
+--+.-+.+|.+.. -++|++.++.. +..+.+...++.. +++-+|++.++|++|+.+-...+.-.-...+.-
T Consensus 155 ---YrG~~GRLrFarkp~cvIDiivi~As-i~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~ 230 (654)
T KOG1419|consen 155 ---YRGWYGRLRFARKPFCVIDIIVIIAS-IAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHS 230 (654)
T ss_pred ---cccceeeEEeecCCceEEEEeeeeee-eeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhH
Confidence 11122234565443 48898854433 2222233333322 234455555555555443322221111111111
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhH
Q 003951 196 TRCTKLVAVTLFAVHCAGC-FNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREM 274 (784)
Q Consensus 196 ~~~~~li~~~l~~~h~~ac-i~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~ 274 (784)
..++-.. ++-|++.+++. +-|+.+.... +...+..+..|.+|+||.++|+|||||||.+|+|+.++
T Consensus 231 ~ELiTt~-YIGFL~LIfsSflVYLaEKd~~------------~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr 297 (654)
T KOG1419|consen 231 KELITTW-YIGFLVLIFSSFLVYLAEKDAQ------------GEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGR 297 (654)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhcccc------------cccccccchhHHHHHHhhheeEEeeccCCcCcccchhH
Confidence 1222222 33334444444 4454443211 12334567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHH---HHHHhHhHHHHH
Q 003951 275 LFDIFYMLFNLGLTSYIIGNMTNL---VVHWTSRTRNFR 310 (784)
Q Consensus 275 i~~i~~~l~g~~~~a~~ig~i~~i---i~~~~~~~~~~~ 310 (784)
+++.++.++|+.+||..-|.+++= .++...+++.|.
T Consensus 298 ~laa~fsligiSFFALPAGILGSGfALKVQeq~RQKHf~ 336 (654)
T KOG1419|consen 298 LLAACFSLIGISFFALPAGILGSGFALKVQEQHRQKHFN 336 (654)
T ss_pred HHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHH
Confidence 999999999999999977776654 444444444433
No 10
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=8.6e-20 Score=165.98 Aligned_cols=112 Identities=21% Similarity=0.173 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCCC--------cc-ccccccccc---CCCchhhhh-hcCcc----cccC-CCCCCCCCCCCccHHHHHH
Q 003951 528 SLSARHQDYPYGDS--------SM-WETRNLNFL---GPQATDIEA-SKDQD----STAC-PVDVNSKVEDGQTELNAAN 589 (784)
Q Consensus 528 d~~g~t~l~~~~~~--------~~-~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~-g~~~~~~d~~g~T~Lh~A~ 589 (784)
|.+|||||||+... ++ ..+..++-. |++|+|.|| .|+.+ |+.. |+|+|..+..|+||||+|+
T Consensus 35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAa 114 (226)
T KOG4412|consen 35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAA 114 (226)
T ss_pred cccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhh
Confidence 45899999996541 22 333333333 999999999 56555 6666 9999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 590 QRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 590 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.+|..+++++|+++||.++++|..|.||||.|+..|..+++++|+..||.
T Consensus 115 gK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~ 164 (226)
T KOG4412|consen 115 GKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP 164 (226)
T ss_pred cCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999977
No 11
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.6e-18 Score=171.64 Aligned_cols=181 Identities=18% Similarity=0.301 Sum_probs=116.2
Q ss_pred ccchhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhhhhhHHHhhhccchHHHHHHHh---cC------C
Q 003951 89 DALLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMSTWFIFDVCSTAPLQFLALLLT---NN------I 159 (784)
Q Consensus 89 ~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~~~f~~Dlis~lP~~~i~~~~~---~~------~ 159 (784)
++++++|.+|.+.|.++.++||+.+ -.+...+++-+ .++|+++++|+++- +... .. .
T Consensus 253 dPFFiVEt~CIiWFtfEllvRf~aC----------PsK~~Ff~nim---NiIDiVaI~PyFit-lgtela~q~g~g~~gq 318 (507)
T KOG1545|consen 253 DPFFIVETLCIIWFTFELLVRFFAC----------PSKATFFRNIM---NIIDIVAIIPYFIT-LGTELAEQQGGGGQGQ 318 (507)
T ss_pred CchHhHHHHHHHHHhHHHHHHHhcC----------ccHHHHHHHHH---HHHHHHHHHHHHHH-HhHHHHHhhcCCccch
Confidence 5688999999999999999999776 12223334433 49999999999643 2221 11 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH---H---HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccc
Q 003951 160 SELTFRLLNMLRLWRLRRVSSLF---A---RLEKDIRFNYFWTRCTKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIGA 233 (784)
Q Consensus 160 ~~~~~~il~llrllRl~r~~~~~---~---~l~~~~~~~~~~~~~~~li~~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~ 233 (784)
+.+.+.+||++||.|++|++++- + -+-+.++. ....+..|++.++..+.+++.-.|..+...+
T Consensus 319 qaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~a--SmrElgLLIFFlfIgviLFsSavYFAEade~--------- 387 (507)
T KOG1545|consen 319 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRA--SMRELGLLIFFLFIGVILFSSAVYFAEADEP--------- 387 (507)
T ss_pred hhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhceeeeeecCCC---------
Confidence 23455666666666666554432 1 12222221 1234444554444444444444444332211
Q ss_pred ccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003951 234 VYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVH 301 (784)
Q Consensus 234 ~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~ 301 (784)
++.+.+.-+||||+++|||||||||+.|.|..++++..++.+.|+.-.|..+..|.+-+..
T Consensus 388 -------~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFny 448 (507)
T KOG1545|consen 388 -------ESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 448 (507)
T ss_pred -------ccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccc
Confidence 1223344589999999999999999999999999999999999999888877666554433
No 12
>PHA02791 ankyrin-like protein; Provisional
Probab=99.64 E-value=1.7e-16 Score=165.16 Aligned_cols=125 Identities=15% Similarity=0.070 Sum_probs=90.9
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCCCC--------Cccccccccccc-CCCchhhhh-hcCcc----cccCCCCCCCCCCC
Q 003951 515 ILHECIGGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL-GPQATDIEA-SKDQD----STACPVDVNSKVED 580 (784)
Q Consensus 515 ~l~~Llg~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~-g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~ 580 (784)
+...|...+.+..|.+|+||||+|.. .++..+.+++.. |.||+|.|+ .++.+ |+.+|+++|.+|..
T Consensus 14 ~~~~Lis~~a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~ 93 (284)
T PHA02791 14 LKSFLSSKDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDK 93 (284)
T ss_pred HHHHHHhCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Confidence 33333333345667778888887443 234555555544 678888888 55555 77888888888888
Q ss_pred CccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CchhhhccCCChhHHHHHHhcCCC
Q 003951 581 GQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGW-SPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 581 g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|+||||+|+..|+.+++++|+++||+++.++..|+ ||||+|+..|+.+++++|+++++.
T Consensus 94 G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~ 153 (284)
T PHA02791 94 GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS 153 (284)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc
Confidence 88888888888888888888888888888887775 788888888888888888887654
No 13
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.63 E-value=4.5e-15 Score=152.49 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=134.6
Q ss_pred hhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhh
Q 003951 370 PIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGV 449 (784)
Q Consensus 370 ~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~ 449 (784)
++++..++|..++++.++.+....+.+.|.+|+.|+.+|+.++.+|+|.+|.|+++...+|++.++..+.+|++||+.++
T Consensus 7 ~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~ 86 (236)
T PRK09392 7 IRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAV 86 (236)
T ss_pred HHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHH
Confidence 47788999999999999999999999999999999999999999999999999999666788889999999999999999
Q ss_pred hcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 450 LYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 450 l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
+.+.++.++++|.++|+++.+++++|.+++.++|.+...+++.+.+++.................++..++
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla~~L 157 (236)
T PRK09392 87 VLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLVKSLKNQKLRSSAERLANYL 157 (236)
T ss_pred hCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877554444444445555555544
No 14
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.62 E-value=3.8e-16 Score=169.14 Aligned_cols=119 Identities=19% Similarity=0.113 Sum_probs=104.5
Q ss_pred cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc----CCCchhhhh-hcCcc----cccCCCCCCCCCCCCcc
Q 003951 521 GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL----GPQATDIEA-SKDQD----STACPVDVNSKVEDGQT 583 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~----g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T 583 (784)
|.+++..|.+|-|+||||.= .++.+|++|+.. +.||+|+|| +|+.. |+++|||++.+|.+|.|
T Consensus 68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~ 147 (600)
T KOG0509|consen 68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLT 147 (600)
T ss_pred CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCc
Confidence 56788888899999999653 358888999888 578999999 66666 89999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 584 ELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 584 ~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|||+||..|+.-.|.+|+.+|+|+|.+|..|+|||++|+..|+...+.+|+..++.
T Consensus 148 ~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~ 203 (600)
T KOG0509|consen 148 PLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS 203 (600)
T ss_pred HHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999998888889988887
No 15
>PHA02791 ankyrin-like protein; Provisional
Probab=99.61 E-value=3.8e-16 Score=162.53 Aligned_cols=128 Identities=15% Similarity=0.064 Sum_probs=105.3
Q ss_pred CChhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---C-CCchhhhh-hcCcc----cccC
Q 003951 510 TDPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---G-PQATDIEA-SKDQD----STAC 570 (784)
Q Consensus 510 ~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g-~~~l~~a~-~~~~~----ll~~ 570 (784)
.+....+..|+ |++++..|..|+||||+|.. .++..+.+++.. | .+|+|+|+ .++.+ |+.+
T Consensus 71 ~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~ 150 (284)
T PHA02791 71 LEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 150 (284)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhc
Confidence 34455555565 88999999999999998554 346667777655 4 47999999 67766 7777
Q ss_pred CCCCCCCC-CCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCc-hhhhccCCChhHHHHHHhcCCC
Q 003951 571 PVDVNSKV-EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP-KAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 571 g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp-l~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|.+. .| ..|.||||+|+..|+.++|++|+++||++|.+|..|.|| ||+|+..|+.+++++|+++|++
T Consensus 151 ~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~ 219 (284)
T PHA02791 151 IPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN 219 (284)
T ss_pred CCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC
Confidence 7543 23 358999999999999999999999999999999999987 9999999999999999999998
No 16
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.58 E-value=2.2e-13 Score=164.29 Aligned_cols=86 Identities=20% Similarity=0.201 Sum_probs=64.2
Q ss_pred CCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChh
Q 003951 554 PQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRS 628 (784)
Q Consensus 554 ~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~ 628 (784)
.++++.|| .|+.+ |+++|+|+|..|.+|+||||+||..|+.++|++|+++|||+|.+|..|+||||.|+..||.+
T Consensus 526 ~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~ 605 (823)
T PLN03192 526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK 605 (823)
T ss_pred hhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence 34566666 56655 77778888877877888888888888888888888888888877777888887777777777
Q ss_pred HHHHHHhcCCC
Q 003951 629 MYDLLLSYENR 639 (784)
Q Consensus 629 i~~lL~~~~~~ 639 (784)
++++|++.++.
T Consensus 606 iv~~L~~~~~~ 616 (823)
T PLN03192 606 IFRILYHFASI 616 (823)
T ss_pred HHHHHHhcCcc
Confidence 77777766554
No 17
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.56 E-value=2.1e-15 Score=168.49 Aligned_cols=129 Identities=14% Similarity=0.039 Sum_probs=91.5
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccc----ccCCCchhhhh-hcCcc----cccCC
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLN----FLGPQATDIEA-SKDQD----STACP 571 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~----~~g~~~l~~a~-~~~~~----ll~~g 571 (784)
+....+..|+ |++++..+.+++||+|.|.. .+++.+.... ..|.||+|+|| .++.+ |+++|
T Consensus 46 ~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g 125 (413)
T PHA02875 46 RDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG 125 (413)
T ss_pred CCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 3444444555 66777776677777776432 2233333322 22778888887 55555 77788
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 572 VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 572 ~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|++.++.+|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 126 ad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~ 193 (413)
T PHA02875 126 ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN 193 (413)
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888877
No 18
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.56 E-value=2.4e-15 Score=145.08 Aligned_cols=119 Identities=16% Similarity=0.070 Sum_probs=95.2
Q ss_pred cCCCCCCCCCCCCCCCCCCC------------Cccccccccccc---CCCchhhhh-hcCc------c-cccCCCCCCCC
Q 003951 521 GGPTIGSSLSARHQDYPYGD------------SSMWETRNLNFL---GPQATDIEA-SKDQ------D-STACPVDVNSK 577 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~------------~~~~~~~~~~~~---g~~~l~~a~-~~~~------~-ll~~g~~~~~~ 577 (784)
+++++..+.++.+++|.+.. .+...+..++.. |.||+|+|| .+.. + |++.|+++|.+
T Consensus 10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~ 89 (166)
T PHA02743 10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAR 89 (166)
T ss_pred chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCC
Confidence 45666666666766665321 112233333332 788888888 4442 2 88999999999
Q ss_pred C-CCCccHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 578 V-EDGQTELNAANQRGHIEMVKVLLE-GGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 578 d-~~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
| ..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~ 153 (166)
T PHA02743 90 ELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV 153 (166)
T ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 8 589999999999999999999995 8999999999999999999999999999999999988
No 19
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.56 E-value=1.7e-15 Score=152.44 Aligned_cols=113 Identities=22% Similarity=0.161 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCCCCCCCC--------Cccccc-cccccc---CCCchhhhhhcCcc----------cccCCCCCCCCC-C
Q 003951 523 PTIGSSLSARHQDYPYGD--------SSMWET-RNLNFL---GPQATDIEASKDQD----------STACPVDVNSKV-E 579 (784)
Q Consensus 523 ~~~~~d~~g~t~l~~~~~--------~~~~~~-~~~~~~---g~~~l~~a~~~~~~----------ll~~g~~~~~~d-~ 579 (784)
-.|-.|.+|+|+|||+.. .+++.| ++|+-. |.||.++|+...++ |-+. +|||++- .
T Consensus 260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ 338 (452)
T KOG0514|consen 260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQ 338 (452)
T ss_pred HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhh
Confidence 458889999999999432 245554 344443 66776666532221 3333 3666664 5
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhc
Q 003951 580 DGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSY 636 (784)
Q Consensus 580 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~ 636 (784)
.|+||||+|+.+|+.++|+.||..|||+|.+|.+|.|+|+.|+..||+||+++|+..
T Consensus 339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~ 395 (452)
T KOG0514|consen 339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV 395 (452)
T ss_pred hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence 677777777777777777777777777777777777777777777777777777654
No 20
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.56 E-value=1.3e-15 Score=145.36 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=95.0
Q ss_pred CCCCCCCCCCCCCCCCCc------ccccc--c--------ccccCCCchhhhh-hcCcc-------cccCCCCCCCCC-C
Q 003951 525 IGSSLSARHQDYPYGDSS------MWETR--N--------LNFLGPQATDIEA-SKDQD-------STACPVDVNSKV-E 579 (784)
Q Consensus 525 ~~~d~~g~t~l~~~~~~~------~~~~~--~--------~~~~g~~~l~~a~-~~~~~-------ll~~g~~~~~~d-~ 579 (784)
+..|.+|+||||+|.... ...+. + .+-.|.|++|+|| .++.+ |+++|+++|.+| .
T Consensus 11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~ 90 (154)
T PHA02736 11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV 90 (154)
T ss_pred HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC
Confidence 456778999999844321 00111 1 1234899999999 55442 889999999998 5
Q ss_pred CCccHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 580 DGQTELNAANQRGHIEMVKVLLE-GGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 580 ~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~ 151 (154)
T PHA02736 91 FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ 151 (154)
T ss_pred CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999998 5999999999999999999999999999999999987
No 21
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.56 E-value=3.9e-17 Score=164.49 Aligned_cols=260 Identities=16% Similarity=0.194 Sum_probs=155.7
Q ss_pred cchhhhhhhhhccccccccccccccc----CCCCCCCcchhhchhhhccCCcEeCCCChh-H----HHHHHHHHHHHHHH
Q 003951 3 FSCAKNFFQRFCSDELHVESVAHGSF----LSSDLLPSLGARINQATKLRRYIISPFNPR-Y----RAWEMWLVVLVVYS 73 (784)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ii~P~s~~-~----~~W~~~~~~~~~~~ 73 (784)
--+.+++|+.|.+...+++...|+.. -....+|. -..-+++.++-..+|.... . .+-.+|+.+.++.+
T Consensus 126 eligDCCyEeYkDrkrENaERL~dd~~~e~ag~~~~p~---~ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~N 202 (632)
T KOG4390|consen 126 ELIGDCCYEEYKDRKRENAERLQDDEDAENAGGPALPA---GLSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIAN 202 (632)
T ss_pred HHHhhhhhHHHhhhhhhhHHHhhchhhhhhcCCCCCcc---cchHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhc
Confidence 34678999999988887766554221 11233333 1223455555556665443 2 22223333333333
Q ss_pred HH-HHhhhhhcc--------cCCCccchhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhhhh-hHHHhh
Q 003951 74 AW-ICPFEFAFL--------TYKKDALLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMSTW-FIFDVC 143 (784)
Q Consensus 74 ~~-~~p~~~~F~--------~~~~~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~~~-f~~Dli 143 (784)
++ .+|-...-. ...+..++.+|..+.++|..+++++++.+ -++ .+++++- -++|++
T Consensus 203 vVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EYlLRL~aA----------PsR----~rF~RSvMSiIDVv 268 (632)
T KOG4390|consen 203 VVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEYLLRLFAA----------PSR----YRFLRSVMSIIDVV 268 (632)
T ss_pred eeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHHHHHHHcC----------chH----HHHHHHHHHHHHHh
Confidence 32 223211111 11124678899999999999999999776 122 3455443 599999
Q ss_pred hccchHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003951 144 STAPLQFLALLLTNNIS-ELTFRLLNMLRLWRLRRVSSLFARLEKD-IRFNYFWTRCTKLVAVTLFAVHCAGCFNYLIAD 221 (784)
Q Consensus 144 s~lP~~~i~~~~~~~~~-~~~~~il~llrllRl~r~~~~~~~l~~~-~~~~~~~~~~~~li~~~l~~~h~~aci~y~i~~ 221 (784)
+++|+++ .+..+.+.. .-.|.-+|.+|++|+++.++.-+.+.-. ..+..-...+.-|++.+.+.+.++|.++|+.+.
T Consensus 269 AIlPYYi-gLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEK 347 (632)
T KOG4390|consen 269 AILPYYI-GLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK 347 (632)
T ss_pred hhhhhhe-EEEecCCccccceeEEEEeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999954 444443321 1133345666666666655444333211 111112233444555555566778888888764
Q ss_pred cCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHH
Q 003951 222 RYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMT 296 (784)
Q Consensus 222 ~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~ 296 (784)
.. +.+.+...-.|||+.++||||.||||+.|.|..+++|..++.+.|+.+.|..+..|.
T Consensus 348 g~----------------~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIV 406 (632)
T KOG4390|consen 348 GS----------------SATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIV 406 (632)
T ss_pred cc----------------cccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEE
Confidence 32 122334456899999999999999999999999999999999999999887554443
No 22
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.55 E-value=3.4e-15 Score=169.78 Aligned_cols=87 Identities=23% Similarity=0.243 Sum_probs=73.1
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccC-CC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQP-VN 626 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-g~ 626 (784)
|.||||+|| .++.+ |+++|+++|..|..|.||||.|+..|+.+++++|+++||+++.+|..|+||||+|+.. ++
T Consensus 168 g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~ 247 (477)
T PHA02878 168 GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKD 247 (477)
T ss_pred CCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCC
Confidence 778888888 56666 7888888888888888888888888888888888888888888888888888888864 67
Q ss_pred hhHHHHHHhcCCC
Q 003951 627 RSMYDLLLSYENR 639 (784)
Q Consensus 627 ~~i~~lL~~~~~~ 639 (784)
.+++++|+++|++
T Consensus 248 ~~iv~~Ll~~gad 260 (477)
T PHA02878 248 YDILKLLLEHGVD 260 (477)
T ss_pred HHHHHHHHHcCCC
Confidence 8888888888887
No 23
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.55 E-value=8.4e-14 Score=140.47 Aligned_cols=125 Identities=21% Similarity=0.310 Sum_probs=115.3
Q ss_pred ccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCC-Cce
Q 003951 379 QGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYR-PQP 456 (784)
Q Consensus 379 ~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~-~~~ 456 (784)
+.+|++.++.+...++.+.|.+|+.|+.+|+.++.+|+|.+|.++++ ...+|++..+..+.+|++||+.+++.+. +++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 46899999999999999999999999999999999999999999999 5568999999999999999999988764 678
Q ss_pred eEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccc
Q 003951 457 FTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESI 503 (784)
Q Consensus 457 ~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~ 503 (784)
++++|.++|+++.+++++|.+++..+|++...+++.+.+++......
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 132 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTSRK 132 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988765443
No 24
>PHA03095 ankyrin-like protein; Provisional
Probab=99.55 E-value=4e-15 Score=169.46 Aligned_cols=126 Identities=15% Similarity=0.052 Sum_probs=108.7
Q ss_pred hhhhhhc--cCCCCCCCCCCCCCCCCCCC----------Cccccccccccc---CCCchhhhh-hcCcc------cccCC
Q 003951 514 IILHECI--GGPTIGSSLSARHQDYPYGD----------SSMWETRNLNFL---GPQATDIEA-SKDQD------STACP 571 (784)
Q Consensus 514 ~~l~~Ll--g~~~~~~d~~g~t~l~~~~~----------~~~~~~~~~~~~---g~~~l~~a~-~~~~~------ll~~g 571 (784)
..+..|+ |++++..|..|+||+|.+.. .+++.|.+++.. |.||+|+|| .++.. ++..|
T Consensus 168 ~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g 247 (471)
T PHA03095 168 ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAG 247 (471)
T ss_pred HHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcC
Confidence 3444445 78888889999999987332 246667777666 999999999 45432 88999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 572 VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 572 ~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+++|.+|..|+||||+|+..|+.++|++|+++|||++.+|..|+||||.|+..|+.+++++|++.++.
T Consensus 248 ~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~ 315 (471)
T PHA03095 248 ISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPS 315 (471)
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
No 25
>PHA02795 ankyrin-like protein; Provisional
Probab=99.54 E-value=5.3e-15 Score=159.67 Aligned_cols=127 Identities=17% Similarity=0.064 Sum_probs=102.9
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccc------ccc---cCCCchhhhh-hcCcc----
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRN------LNF---LGPQATDIEA-SKDQD---- 566 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~------~~~---~g~~~l~~a~-~~~~~---- 566 (784)
+....++.|+ |+|++.. ++.||+|.|.. .++..|++ .++ .+.+++|.|+ .+..+
T Consensus 129 n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~ 206 (437)
T PHA02795 129 VEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKL 206 (437)
T ss_pred CCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHH
Confidence 4445555666 8898875 45889887542 23444432 221 2667888888 45555
Q ss_pred cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCC--------ChhHHHHHHhcCC
Q 003951 567 STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPV--------NRSMYDLLLSYEN 638 (784)
Q Consensus 567 ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g--------~~~i~~lL~~~~~ 638 (784)
|+.+|+|+|.+|.+|.||||+|+..|+.++|++|+++||++|.+|..|+||||.|+..| |.+++++|+++|+
T Consensus 207 LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga 286 (437)
T PHA02795 207 CIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL 286 (437)
T ss_pred HHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999988 5799999999998
Q ss_pred C
Q 003951 639 R 639 (784)
Q Consensus 639 ~ 639 (784)
.
T Consensus 287 d 287 (437)
T PHA02795 287 S 287 (437)
T ss_pred C
Confidence 7
No 26
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.54 E-value=2.9e-15 Score=155.26 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=95.0
Q ss_pred ccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q 003951 542 SMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAK 613 (784)
Q Consensus 542 ~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~ 613 (784)
++..|.+||-. ..|||.-|| .|+++ |+++|+|++.+|..|+|.||+||.+||.+++++|++.|||+|+++..
T Consensus 103 L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~k 182 (615)
T KOG0508|consen 103 LLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYK 182 (615)
T ss_pred HHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhccc
Confidence 46667777755 568999999 89999 99999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhccCCChhHHHHHHhcCCC-CCCCcccc
Q 003951 614 GWSPKAPAEQPVNRSMYDLLLSYENR-TPDEHKVE 647 (784)
Q Consensus 614 g~tpl~~A~~~g~~~i~~lL~~~~~~-~~~~~~~~ 647 (784)
|+|+||.|+..||.||+++|+++|++ ..+.+..+
T Consensus 183 GNTALH~caEsG~vdivq~Ll~~ga~i~~d~~Gmt 217 (615)
T KOG0508|consen 183 GNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMT 217 (615)
T ss_pred CchHHHhhhhcccHHHHHHHHhCCceeeecCCCCc
Confidence 99999999999999999999999998 33444444
No 27
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.53 E-value=5.4e-15 Score=148.21 Aligned_cols=128 Identities=14% Similarity=0.068 Sum_probs=101.8
Q ss_pred ChhhhhhhhccCCCCCCCCCCCCCCCCCCC----------Cccccccccccc----CCCchhhhhh-c---Ccc----cc
Q 003951 511 DPGIILHECIGGPTIGSSLSARHQDYPYGD----------SSMWETRNLNFL----GPQATDIEAS-K---DQD----ST 568 (784)
Q Consensus 511 ~~~~~l~~Llg~~~~~~d~~g~t~l~~~~~----------~~~~~~~~~~~~----g~~~l~~a~~-~---~~~----ll 568 (784)
+....++.|+. ..+..|..|.||||.+.. .+++.|.+++.. |.||+|+|+. + +.+ |+
T Consensus 32 ~~~~~vk~Li~-~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll 110 (209)
T PHA02859 32 DDIEGVKKWIK-FVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILI 110 (209)
T ss_pred CcHHHHHHHHH-hhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHH
Confidence 33344444442 245567789999997421 246777777654 7899999873 2 334 88
Q ss_pred cCCCCCCCCCCCCccHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCCchhh-hccCCChhHHHHHHhcCCC
Q 003951 569 ACPVDVNSKVEDGQTELNAANQ--RGHIEMVKVLLEGGRNGNKPDAKGWSPKAP-AEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 569 ~~g~~~~~~d~~g~T~Lh~A~~--~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~-A~~~g~~~i~~lL~~~~~~ 639 (784)
++|+|+|.+|.+|.||||.|+. .++.+++++|+++|++++.+|..|+||||. |+..|+.+++++|+++|++
T Consensus 111 ~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad 184 (209)
T PHA02859 111 DSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID 184 (209)
T ss_pred HCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC
Confidence 9999999999999999999875 578999999999999999999999999995 5678899999999999987
No 28
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.53 E-value=9.4e-15 Score=166.17 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=102.5
Q ss_pred cCCCCCCCCC-CCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCcc
Q 003951 521 GGPTIGSSLS-ARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQT 583 (784)
Q Consensus 521 g~~~~~~d~~-g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T 583 (784)
|++++..|.+ |+||||+|.. .++..|.+++.. |.||+|.|+ .++.+ |++.|+++|.+|..|+|
T Consensus 157 gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~T 236 (477)
T PHA02878 157 GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNT 236 (477)
T ss_pred CCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 8899999888 9999998554 346677777665 899999999 66666 89999999999999999
Q ss_pred HHHHHHHc-CCHHHHHHHHhCCCCCCCCCC-CCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 584 ELNAANQR-GHIEMVKVLLEGGRNGNKPDA-KGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 584 ~Lh~A~~~-g~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|||+|+.. ++.+++++|+++||++|.++. .|+||||.| .++.+++++|+++|++
T Consensus 237 pLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gad 292 (477)
T PHA02878 237 PLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGAD 292 (477)
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCC
Confidence 99999975 789999999999999999886 799999999 5788999999999998
No 29
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.52 E-value=5.8e-15 Score=168.52 Aligned_cols=128 Identities=23% Similarity=0.107 Sum_probs=111.1
Q ss_pred hhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---C------CCchhhhh-hcC--cc---
Q 003951 512 PGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---G------PQATDIEA-SKD--QD--- 566 (784)
Q Consensus 512 ~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g------~~~l~~a~-~~~--~~--- 566 (784)
....+..|+ |++++..|..|.||+|+|.. .+++.|.+++.. | .+++|.|+ .++ .+
T Consensus 155 ~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~ 234 (480)
T PHA03100 155 DLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVN 234 (480)
T ss_pred hHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHH
Confidence 444555555 88999999999999998543 346667766655 4 78999999 566 44
Q ss_pred -cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 567 -STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 567 -ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|+++|+++|.+|..|.||||.|+..|+.+++++|+++|||++.+|..|.||++.|+..|+.+++++|+++|++
T Consensus 235 ~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~ 308 (480)
T PHA03100 235 YLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 308 (480)
T ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987
No 30
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.52 E-value=5e-15 Score=160.52 Aligned_cols=124 Identities=18% Similarity=0.072 Sum_probs=109.8
Q ss_pred hhhhc--cCCCCCCC-CCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCC
Q 003951 516 LHECI--GGPTIGSS-LSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNS 576 (784)
Q Consensus 516 l~~Ll--g~~~~~~d-~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~ 576 (784)
.+.|+ |+|+|..+ .-+.||||||.. .++++|+++++. |-+++|+|| .++.. ++..|+|+|.
T Consensus 94 ~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~ 173 (600)
T KOG0509|consen 94 ARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDL 173 (600)
T ss_pred HHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCC
Confidence 33444 99999987 558999999654 468899999887 899999999 45554 8899999999
Q ss_pred CCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 577 KVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPD-AKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 577 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|.+|+||||+||.+|+...+++|++.||+++..| .+|+||||+|+..|+..++.+|++.|++
T Consensus 174 ~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~ 237 (600)
T KOG0509|consen 174 RDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD 237 (600)
T ss_pred cCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCc
Confidence 99999999999999999998999999999999998 8999999999999999999988888777
No 31
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.52 E-value=9.5e-15 Score=168.35 Aligned_cols=78 Identities=21% Similarity=0.164 Sum_probs=70.7
Q ss_pred hcCcc----cccCCCCCCCCCCCCccHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCCchhhhcc------------
Q 003951 562 SKDQD----STACPVDVNSKVEDGQTELNAANQ--RGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQ------------ 623 (784)
Q Consensus 562 ~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~--~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~------------ 623 (784)
.++.+ |+++|+++|.+|.+|+||||+|+. .|+.+++++|+++||+++.+|..|+||||+|+.
T Consensus 294 ~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~ 373 (764)
T PHA02716 294 NIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPET 373 (764)
T ss_pred cCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccc
Confidence 56666 899999999999999999999864 568999999999999999999999999998864
Q ss_pred --CCChhHHHHHHhcCCC
Q 003951 624 --PVNRSMYDLLLSYENR 639 (784)
Q Consensus 624 --~g~~~i~~lL~~~~~~ 639 (784)
.|+.+++++|+++|++
T Consensus 374 ~~~~~~eVVklLL~~GAD 391 (764)
T PHA02716 374 DNDIRLDVIQCLISLGAD 391 (764)
T ss_pred cccChHHHHHHHHHCCCC
Confidence 4789999999999998
No 32
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.51 E-value=1.1e-14 Score=163.56 Aligned_cols=133 Identities=19% Similarity=0.134 Sum_probs=110.9
Q ss_pred CCCCChhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Ccc-----------------------ccccccccc-
Q 003951 507 YPTTDPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSM-----------------------WETRNLNFL- 552 (784)
Q Consensus 507 ~~~~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~-----------------------~~~~~~~~~- 552 (784)
+...+....+..|+ |++++..+..|.||+|.|.. .++ ..|.+++..
T Consensus 42 A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~ 121 (434)
T PHA02874 42 AIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKD 121 (434)
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCC
Confidence 34456666667777 88998888889999886322 112 223334333
Q ss_pred --CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCC
Q 003951 553 --GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPV 625 (784)
Q Consensus 553 --g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g 625 (784)
|.||+|+|| .++.+ |+++|+++|.+|.+|.||||+|+..|+.+++++|+++|++++..|..|+||||.|+..|
T Consensus 122 ~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g 201 (434)
T PHA02874 122 AELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYG 201 (434)
T ss_pred CCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 889999999 66766 88999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhcCCC
Q 003951 626 NRSMYDLLLSYENR 639 (784)
Q Consensus 626 ~~~i~~lL~~~~~~ 639 (784)
+.+++++|++.|+.
T Consensus 202 ~~~iv~~Ll~~g~~ 215 (434)
T PHA02874 202 DYACIKLLIDHGNH 215 (434)
T ss_pred CHHHHHHHHhCCCC
Confidence 99999999999987
No 33
>PHA02741 hypothetical protein; Provisional
Probab=99.51 E-value=7.8e-15 Score=142.11 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=94.8
Q ss_pred CCCCCCCCCCCCCCCCC--------c---c---ccccccccc---CCCchhhhh-hcCc----c----cccCCCCCCCCC
Q 003951 525 IGSSLSARHQDYPYGDS--------S---M---WETRNLNFL---GPQATDIEA-SKDQ----D----STACPVDVNSKV 578 (784)
Q Consensus 525 ~~~d~~g~t~l~~~~~~--------~---~---~~~~~~~~~---g~~~l~~a~-~~~~----~----ll~~g~~~~~~d 578 (784)
+..|..|+||||.|... + . ..+.+++.. |.||+|+|| .++. + |+.+|+++|.+|
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~ 94 (169)
T PHA02741 15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE 94 (169)
T ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence 45566788888874431 1 1 123344433 899999999 4552 3 889999999998
Q ss_pred C-CCccHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 579 E-DGQTELNAANQRGHIEMVKVLLE-GGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 579 ~-~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
. +|+||||+|+..|+.+++++|++ .|++++.+|..|+||||.|...|+.+++++|+++++.
T Consensus 95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5 99999999999999999999998 5999999999999999999999999999999999876
No 34
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.51 E-value=8.9e-15 Score=171.46 Aligned_cols=119 Identities=23% Similarity=0.235 Sum_probs=65.6
Q ss_pred cCCCCCCCCCCCCCCCCCCCC--------ccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccH
Q 003951 521 GGPTIGSSLSARHQDYPYGDS--------SMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTE 584 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~~--------~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~ 584 (784)
|+++|.....|.||+|.+... +.+.+...+.. |-+++|.|. .+... ++++|++++.++.+|.||
T Consensus 464 g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~Tp 543 (1143)
T KOG4177|consen 464 GADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTP 543 (1143)
T ss_pred CCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccch
Confidence 888888888888888764331 11111111111 334444444 22222 555555555555555566
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 585 LNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 585 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
||.||..|+.++|++|+++|||++.+|+.|+||||.|+..||.+|+++|+++||.
T Consensus 544 Lh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~ 598 (1143)
T KOG4177|consen 544 LHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS 598 (1143)
T ss_pred HHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC
Confidence 6666666666666666666666655555566666666555555566666655555
No 35
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.51 E-value=1.1e-14 Score=162.61 Aligned_cols=130 Identities=14% Similarity=0.001 Sum_probs=112.1
Q ss_pred CChhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCC
Q 003951 510 TDPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACP 571 (784)
Q Consensus 510 ~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g 571 (784)
.+....+..|+ |++++..+.+|.||||+|.. .+++.|.+++.. +.+|+|.|+ .|+.+ |++.|
T Consensus 12 ~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 12 FGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred hCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 34555566666 88999999999999998543 346667666544 789999999 77777 88999
Q ss_pred CCCC-CCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 572 VDVN-SKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 572 ~~~~-~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
++++ ..+.+|+||||+|+..|+.+++++|+++|||++.+|..|+||||+|+..|+.+++++|+++|+.
T Consensus 92 ~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~ 160 (413)
T PHA02875 92 KFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC 160 (413)
T ss_pred CcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 8875 4578899999999999999999999999999999999999999999999999999999999987
No 36
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.51 E-value=1.6e-14 Score=166.57 Aligned_cols=129 Identities=13% Similarity=0.013 Sum_probs=107.8
Q ss_pred Chhhhhhhhc--c-CCCCCC-CCCCCCCCCCCCC----------Cccccccccccc---CCCchhhhh-hcCc--c----
Q 003951 511 DPGIILHECI--G-GPTIGS-SLSARHQDYPYGD----------SSMWETRNLNFL---GPQATDIEA-SKDQ--D---- 566 (784)
Q Consensus 511 ~~~~~l~~Ll--g-~~~~~~-d~~g~t~l~~~~~----------~~~~~~~~~~~~---g~~~l~~a~-~~~~--~---- 566 (784)
++...++.|+ | +++|.. |..|+||||.+.. .+++.|.+++.. |.||||.|+ .++. +
T Consensus 153 v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVkl 232 (764)
T PHA02716 153 IDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKK 232 (764)
T ss_pred CCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence 3445555555 6 889987 8899999997421 346788888876 899999999 5543 3
Q ss_pred cccCCCCCCCCCCCCccHHHHH-------------------------------------HHcCCHHHHHHHHhCCCCCCC
Q 003951 567 STACPVDVNSKVEDGQTELNAA-------------------------------------NQRGHIEMVKVLLEGGRNGNK 609 (784)
Q Consensus 567 ll~~g~~~~~~d~~g~T~Lh~A-------------------------------------~~~g~~~~v~~Ll~~ga~~~~ 609 (784)
|+++|||+|.+|..|+||||.| +..|+.+++++|+++||+++.
T Consensus 233 LLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~ 312 (764)
T PHA02716 233 IIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHY 312 (764)
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceec
Confidence 8999999999999999999975 445889999999999999999
Q ss_pred CCCCCCCchhhhcc--CCChhHHHHHHhcCCC
Q 003951 610 PDAKGWSPKAPAEQ--PVNRSMYDLLLSYENR 639 (784)
Q Consensus 610 ~d~~g~tpl~~A~~--~g~~~i~~lL~~~~~~ 639 (784)
+|..|+||||+|+. .|+.+++++|+++|++
T Consensus 313 kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD 344 (764)
T PHA02716 313 KDSAGRTCLHQYILRHNISTDIIKLLHEYGND 344 (764)
T ss_pred cCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC
Confidence 99999999998764 5689999999999998
No 37
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.50 E-value=2.2e-13 Score=122.19 Aligned_cols=113 Identities=32% Similarity=0.514 Sum_probs=105.5
Q ss_pred ccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCCCc
Q 003951 377 LFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYRPQ 455 (784)
Q Consensus 377 lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~ 455 (784)
+|..++++.+..++..++.+.+.+|+.|+.+|+..+.+|+|.+|.++++ ...+|++..+..+.+|++||+..++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 4788999999999999999999999999999999999999999999999 556678889999999999999999888899
Q ss_pred eeEEEEccceEEEEecHHHHHHHHHhcHHHHHHH
Q 003951 456 PFTVRTTELSQILRLSRTSLMNSIQANMEDGRIV 489 (784)
Q Consensus 456 ~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~ 489 (784)
.++++|.+.|+++.|++++|.+++.++|++...+
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999999999999999999999999999887654
No 38
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.49 E-value=1.7e-14 Score=111.36 Aligned_cols=55 Identities=35% Similarity=0.450 Sum_probs=33.7
Q ss_pred cccCC-CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhh
Q 003951 567 STACP-VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPA 621 (784)
Q Consensus 567 ll~~g-~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 621 (784)
|+++| +++|.+|..|+||||+||..|+.++|++|++.|+|++.+|..|+||+|+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 57788 99999999999999999999999999999999999999999999999987
No 39
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.49 E-value=2e-13 Score=139.02 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=106.7
Q ss_pred HHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEcc
Q 003951 385 FLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTE 463 (784)
Q Consensus 385 ~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~ 463 (784)
|...|....+.+.|++|+.|+.+||+++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.+++.+.+++++++|.+
T Consensus 23 ~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~ 102 (226)
T PRK10402 23 FSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIE 102 (226)
T ss_pred CCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEec
Confidence 34467778889999999999999999999999999999999 56789999999999999999999999999999999999
Q ss_pred ceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHh
Q 003951 464 LSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKD 499 (784)
Q Consensus 464 ~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 499 (784)
+|+++.+++++|.+++..+|.+...+++.+..++..
T Consensus 103 ~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~ 138 (226)
T PRK10402 103 ECWCLALPMKDCRPLLLNDALFLRKLCKFLSHKNYR 138 (226)
T ss_pred cEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988654
No 40
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.48 E-value=4.8e-14 Score=120.95 Aligned_cols=79 Identities=30% Similarity=0.372 Sum_probs=72.7
Q ss_pred hhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHH
Q 003951 557 TDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYD 631 (784)
Q Consensus 557 l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~ 631 (784)
||.|| .++.+ +++.|.+++. |+||||+|+..|+.+++++|+++|++++.+|..|+||||.|+..|+.++++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 76 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK 76 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence 57888 77777 8889988887 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC
Q 003951 632 LLLSYENR 639 (784)
Q Consensus 632 lL~~~~~~ 639 (784)
+|+++|++
T Consensus 77 ~Ll~~g~~ 84 (89)
T PF12796_consen 77 LLLEHGAD 84 (89)
T ss_dssp HHHHTTT-
T ss_pred HHHHcCCC
Confidence 99999987
No 41
>PHA02946 ankyin-like protein; Provisional
Probab=99.47 E-value=3.9e-14 Score=158.29 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=61.3
Q ss_pred cCCCCCCCCCCCCCCCCCCC----------Cccccccccccc----CCCchhhhhhcCcc----cccCCCCCCCCCCCCc
Q 003951 521 GGPTIGSSLSARHQDYPYGD----------SSMWETRNLNFL----GPQATDIEASKDQD----STACPVDVNSKVEDGQ 582 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~----------~~~~~~~~~~~~----g~~~l~~a~~~~~~----ll~~g~~~~~~d~~g~ 582 (784)
|++++..|.+|+||||++.. .++..|.+++.. |.+|++.|+.++.+ |++.|++++.+|..|+
T Consensus 95 GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~ 174 (446)
T PHA02946 95 GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGK 174 (446)
T ss_pred cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCC
Confidence 55555555555555554211 123444444421 45555422233333 5555666666666666
Q ss_pred cHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCCchhhhccCC--ChhHHHHHHhcCCC
Q 003951 583 TELNAANQRG--HIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPV--NRSMYDLLLSYENR 639 (784)
Q Consensus 583 T~Lh~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g--~~~i~~lL~~~~~~ 639 (784)
||||.|+..+ +.+++++|+++||+++.+|..|+||||+|+..| +.+++++|+. |++
T Consensus 175 t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad 234 (446)
T PHA02946 175 NHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD 234 (446)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC
Confidence 6666554433 345666666666666666666666666666554 4555555553 443
No 42
>PHA02946 ankyin-like protein; Provisional
Probab=99.47 E-value=3.2e-14 Score=158.98 Aligned_cols=118 Identities=17% Similarity=0.168 Sum_probs=82.9
Q ss_pred cCCCCC-CCCCCCCCCCCCCC-------Cccccccccccc---CCCchhhhh-hcCc--c----cccCCCCCCCCCCCCc
Q 003951 521 GGPTIG-SSLSARHQDYPYGD-------SSMWETRNLNFL---GPQATDIEA-SKDQ--D----STACPVDVNSKVEDGQ 582 (784)
Q Consensus 521 g~~~~~-~d~~g~t~l~~~~~-------~~~~~~~~~~~~---g~~~l~~a~-~~~~--~----ll~~g~~~~~~d~~g~ 582 (784)
|++++. .|.+|+||+|.+.. .++..|.+++.. |.||+|.|+ .++. + |++.|+|+|.+|.+|+
T Consensus 130 Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~ 209 (446)
T PHA02946 130 GAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGN 209 (446)
T ss_pred CCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCC
Confidence 777774 46778888764322 234455555544 778888776 3332 2 7778888888888888
Q ss_pred cHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCC-hhHHHHHHhcCCC
Q 003951 583 TELNAANQRG--HIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVN-RSMYDLLLSYENR 639 (784)
Q Consensus 583 T~Lh~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~-~~i~~lL~~~~~~ 639 (784)
||||+|+..| +.+++++|++ ||++|.+|..|+||||+|+..++ .+++++|+++|+.
T Consensus 210 TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~ 268 (446)
T PHA02946 210 TPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNV 268 (446)
T ss_pred CHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCC
Confidence 8888888765 6778887774 78888888888888888887776 4777788877765
No 43
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.47 E-value=4.7e-14 Score=161.05 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=117.9
Q ss_pred cCCCCChhhhhhhhc--cCCCCCCCCCCCCCCCC-----CCC--------Cccccccccccc---CCCchhhhh--hcC-
Q 003951 506 EYPTTDPGIILHECI--GGPTIGSSLSARHQDYP-----YGD--------SSMWETRNLNFL---GPQATDIEA--SKD- 564 (784)
Q Consensus 506 ~~~~~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~-----~~~--------~~~~~~~~~~~~---g~~~l~~a~--~~~- 564 (784)
.+...+....++.|+ |++++..+..|.||+|. |.. .+++.|.+++.. |.||+|+|+ ..+
T Consensus 41 ~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~ 120 (480)
T PHA03100 41 LAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNS 120 (480)
T ss_pred hhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccCh
Confidence 355566777778887 99999999999999998 654 346777777655 899999999 533
Q ss_pred cc----cccCCCCCCCCCCCCccHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCC
Q 003951 565 QD----STACPVDVNSKVEDGQTELNAANQRG--HIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYEN 638 (784)
Q Consensus 565 ~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~ 638 (784)
.+ |+++|++++..|.+|.||||.|+..| +.+++++|+++|++++.+|..|+||||.|+..|+.+++++|+++|+
T Consensus 121 ~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga 200 (480)
T PHA03100 121 YSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGA 200 (480)
T ss_pred HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 34 89999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred C
Q 003951 639 R 639 (784)
Q Consensus 639 ~ 639 (784)
+
T Consensus 201 ~ 201 (480)
T PHA03100 201 D 201 (480)
T ss_pred C
Confidence 8
No 44
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.47 E-value=4.2e-14 Score=161.38 Aligned_cols=127 Identities=14% Similarity=0.045 Sum_probs=105.6
Q ss_pred hhhhhhhc--cCCCCC-CCCCCCCCCCCCC------------CCccccccccccc---CCCchhhhhhcC-------cc-
Q 003951 513 GIILHECI--GGPTIG-SSLSARHQDYPYG------------DSSMWETRNLNFL---GPQATDIEASKD-------QD- 566 (784)
Q Consensus 513 ~~~l~~Ll--g~~~~~-~d~~g~t~l~~~~------------~~~~~~~~~~~~~---g~~~l~~a~~~~-------~~- 566 (784)
...++.|+ |++++. .+..|.||+|.+. ..+++.|++++.. |.+++|.++.++ .+
T Consensus 160 ~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~i 239 (494)
T PHA02989 160 KDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKV 239 (494)
T ss_pred HHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHH
Confidence 34455555 889888 6788999988531 1357778887766 678888766332 22
Q ss_pred --cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 567 --STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 567 --ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
++..|+|+|.+|.+|+||||+|+..|+.++|++|+++|||+|.+|..|+||||.|+..|+.++++.|++.++.
T Consensus 240 l~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~ 314 (494)
T PHA02989 240 LNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG 314 (494)
T ss_pred HHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 5677899999999999999999999999999999999999999999999999999999999999999998865
No 45
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.47 E-value=5.1e-14 Score=158.25 Aligned_cols=125 Identities=16% Similarity=0.069 Sum_probs=73.7
Q ss_pred hhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCC
Q 003951 513 GIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDV 574 (784)
Q Consensus 513 ~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~ 574 (784)
...+..|+ |++++..|..|+||+|+|.. .++..|.+++.. |.||+|.|+ .++.+ |++.|+++
T Consensus 137 ~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i 216 (434)
T PHA02874 137 LESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI 216 (434)
T ss_pred HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 33344444 55666666666666665332 234444444433 566666666 44444 56666666
Q ss_pred CCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCC-ChhHHHHHHhcCCC
Q 003951 575 NSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPV-NRSMYDLLLSYENR 639 (784)
Q Consensus 575 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g-~~~i~~lL~~~~~~ 639 (784)
+.++..|.||||.|+..+. +++++|+ .|++++.+|..|+||||+|+..+ +.+++++|+++|++
T Consensus 217 ~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad 280 (434)
T PHA02874 217 MNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD 280 (434)
T ss_pred cCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCC
Confidence 6666666666666665443 3444444 46667777777777777777654 67777777777776
No 46
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.46 E-value=1.2e-13 Score=137.63 Aligned_cols=190 Identities=21% Similarity=0.366 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhh-hhhHHHhhhccchHHHHHHHhcCCc--hhHHHHHHH
Q 003951 93 IIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMS-TWFIFDVCSTAPLQFLALLLTNNIS--ELTFRLLNM 169 (784)
Q Consensus 93 ~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~-~~f~~Dlis~lP~~~i~~~~~~~~~--~~~~~il~l 169 (784)
++|.+++++|.+|+++++++.... +++|++ .|.++|+++++|............. ....+++++
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~-------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK-------------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRL 67 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG--------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccH-------------HHHHhcChhhcccccccccccccccccccccccccceEEEEEe
Confidence 478899999999999999765211 567885 4578999999998543322221111 112344455
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHH
Q 003951 170 LRLWRLRRVSSLFARLEKDIR-FNYFWTRCTKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYV 248 (784)
Q Consensus 170 lrllRl~r~~~~~~~l~~~~~-~~~~~~~~~~li~~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~ 248 (784)
+|++|+.|+.+.++.+..... ......++.+++..+++++|++||+++.+..........+-....++....+.+++|.
T Consensus 68 l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 147 (200)
T PF00520_consen 68 LRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFG 147 (200)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHH
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccchhheeccccccccccccccccccccccccccccc
Confidence 555554444444433332211 1223446778888888999999999998875433222211111223445556778899
Q ss_pred HHHHHHhhhccccccCCcccC-----CchhHHHH-HHHHHHHHHHHHHHHhhH
Q 003951 249 TAMYWSITTLTTTGYGDLHAE-----NPREMLFD-IFYMLFNLGLTSYIIGNM 295 (784)
Q Consensus 249 ~slyw~i~tltTvGyGDi~p~-----~~~e~i~~-i~~~l~g~~~~a~~ig~i 295 (784)
.|+||++.++|+.||||+.|. +..+.++. ++..+.++.+++.++|.|
T Consensus 148 ~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 148 ESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999999999999999999987 88898888 556666778888888765
No 47
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.45 E-value=2.8e-14 Score=157.40 Aligned_cols=116 Identities=17% Similarity=0.041 Sum_probs=102.6
Q ss_pred CCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----ccc-CC-CCCCCCCCCCccHHH
Q 003951 525 IGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STA-CP-VDVNSKVEDGQTELN 586 (784)
Q Consensus 525 ~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~-~g-~~~~~~d~~g~T~Lh 586 (784)
|..|.+|.||||++.. +++..|.+++.. +.+|+|.|| .|+.+ |++ .| ...|..|..|+||||
T Consensus 267 ~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLH 346 (929)
T KOG0510|consen 267 NDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLH 346 (929)
T ss_pred hcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchh
Confidence 6778899999998543 568888888877 889999999 67766 666 44 468899999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCC---CCCCCCCCchhhhccCCChhHHHHHHhcCCCC
Q 003951 587 AANQRGHIEMVKVLLEGGRNGN---KPDAKGWSPKAPAEQPVNRSMYDLLLSYENRT 640 (784)
Q Consensus 587 ~A~~~g~~~~v~~Ll~~ga~~~---~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~~ 640 (784)
.|+..||..++++|+..||+.+ ..|++|.||||.|+..|+..++++|+++|++.
T Consensus 347 laa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I 403 (929)
T KOG0510|consen 347 LAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI 403 (929)
T ss_pred hhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence 9999999999999999999988 56999999999999999999999999999993
No 48
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=99.45 E-value=6.4e-15 Score=152.96 Aligned_cols=157 Identities=17% Similarity=0.248 Sum_probs=135.7
Q ss_pred hcCcc----cccCCCCCCCCC-CCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhc
Q 003951 562 SKDQD----STACPVDVNSKV-EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSY 636 (784)
Q Consensus 562 ~~~~~----ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~ 636 (784)
.++++ |+..||++|..+ +.|.||||+||..|+..-+++|+-.||||+++|..|+||+++|...||.++++-|++.
T Consensus 143 t~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 143 TGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred cccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence 46666 999999999998 6799999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCccccccCCCcccccccccccccCccCCCCCcCccchhhcccCCCccCCCCCcccCCCcceEEEeCCCCCCccc
Q 003951 637 ENRTPDEHKVEIMGPEISDNIWNTRRKHRRHEWPDVSKSHSKRESIKLGSCISSCSSGEVNKSNKKRITIHMPYQNTRTS 716 (784)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~~Rvti~~~~~~~~~~ 716 (784)
.-. . .-|...|......+|.
T Consensus 223 ~y~---------v---------------------------------------------------tDR~~f~lcgrKpDHk 242 (669)
T KOG0818|consen 223 QYE---------L---------------------------------------------------TDRLAFYLCGRKPDHK 242 (669)
T ss_pred HHH---------H---------------------------------------------------HHHHHHHHhcCCCccc
Confidence 744 0 0155666666666655
Q ss_pred cccCcEEEEccc-----cHHHHHHHHhhhcCCCcceeeeeCCCceeeeeeeeecCCEEEEEecCCcccCCC
Q 003951 717 QRHLGKLIVLPD-----SIEELLRIAGEKFGGYKFTKVVNAENAEIDDICVIRDGDHLFLLQNEGETMGKD 782 (784)
Q Consensus 717 ~~~~gk~~~~p~-----s~~ell~~a~~~~~~~~~~~~~~~~ga~id~i~~ird~~~l~~~~~~~~~~~~~ 782 (784)
+|+.+.+|+ .+.|++|+|.+|+. .-+.+++.+-..++.|..+.|++|..|+.+.++.++.-|
T Consensus 243 ---ngqhfiIP~~~~sld~se~~k~ar~klq-~l~n~~FeeL~mD~yDEvdRRE~eavW~~tqnhsal~a~ 309 (669)
T KOG0818|consen 243 ---NGQHFIIPQMADSLDLSELAKAAKKKLQ-SLSNHLFEELAMDVYDEVDRRETDAVWLATQNHSALVTE 309 (669)
T ss_pred ---CCcceeccccccchhHHHHHHHHHHHHh-hcchhhHHHHHHHHHHHHhhhhhhhHHhhhccchhhccc
Confidence 788888887 68999999999999 488899999999999999999999999998877665443
No 49
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.44 E-value=1.2e-12 Score=134.40 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=122.6
Q ss_pred hccccccccCCHHHHHHHHHcCcc-cccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhh
Q 003951 372 VQNVYLFQGVSHDFLFQLVSDMDA-EYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGV 449 (784)
Q Consensus 372 l~~~~lf~~~s~~~l~~l~~~~~~-~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~ 449 (784)
+++.+.|..++++.++.|....+. +.|.+||.|+.+||.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 455555557999999999988864 679999999999999999999999999999 557899999999999999999776
Q ss_pred hcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 450 LYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 450 l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
+. .+++.+++|.++|+++.|+++.|.+++.++|++...+++.+.+++.................++..++
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rla~~L 164 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQEMILLLSKKNAEERLAAFI 164 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 54 45567899999999999999999999999999999999999998877554443333444454544444
No 50
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.44 E-value=1e-12 Score=132.56 Aligned_cols=133 Identities=22% Similarity=0.331 Sum_probs=120.0
Q ss_pred ccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhc
Q 003951 373 QNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLY 451 (784)
Q Consensus 373 ~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~ 451 (784)
...+.|...+.+....+....+.+.+++|+.|+.+||+.+.+|+|.+|.++++ ...+|++.++..+.+|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 34566667788888888888999999999999999999999999999999999 55678999999999999999999999
Q ss_pred CCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccc
Q 003951 452 YRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGF 505 (784)
Q Consensus 452 ~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~ 505 (784)
+.+++++++|.++|+++.++++.|.+++..+|.....++..+.+++........
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~~~~ 136 (214)
T COG0664 83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALERLS 136 (214)
T ss_pred CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999888999999999999999888555443
No 51
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.44 E-value=5.6e-13 Score=114.58 Aligned_cols=90 Identities=30% Similarity=0.496 Sum_probs=83.4
Q ss_pred ccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecHH
Q 003951 395 AEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRT 473 (784)
Q Consensus 395 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~ 473 (784)
++.|++|+.|+++|+.++.+|+|++|.++++ ...+|+..++..+.+|++||+.+++.+.++.++++|.++|+++.|+++
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 80 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE 80 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence 3679999999999999999999999999999 445666677999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcHH
Q 003951 474 SLMNSIQANME 484 (784)
Q Consensus 474 ~f~~ll~~~p~ 484 (784)
+|.++++++|+
T Consensus 81 ~~~~~~~~~p~ 91 (91)
T PF00027_consen 81 DFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHhCcC
Confidence 99999999996
No 52
>PHA02798 ankyrin-like protein; Provisional
Probab=99.44 E-value=7.9e-14 Score=158.94 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=68.9
Q ss_pred cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 567 STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 567 ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
++..|+|+|.+|..|.||||.|+..|+.+++++|+++|||+|.+|..|+|||+.|+..|+.++++.|++++++
T Consensus 244 ~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~ 316 (489)
T PHA02798 244 FIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPN 316 (489)
T ss_pred HHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCC
Confidence 4455688899999999999999999999999999999999999999999999999999999999999999987
No 53
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.44 E-value=1.1e-13 Score=162.60 Aligned_cols=133 Identities=20% Similarity=0.179 Sum_probs=114.9
Q ss_pred CCCCChhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cc
Q 003951 507 YPTTDPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----ST 568 (784)
Q Consensus 507 ~~~~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll 568 (784)
+...+.....+-++ ++..+.....|-+++|.+.+ .+...|.++..+ |.||||.|| .|+.+ |+
T Consensus 481 aaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLL 560 (1143)
T KOG4177|consen 481 AAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLL 560 (1143)
T ss_pred hhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhh
Confidence 44556666666555 44555556678999998554 356777788777 679999999 89888 99
Q ss_pred cCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 569 ACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 569 ~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
++|+|++++|+.|+||||.||..|+.+|+.+|+++||+||..|.+|.|||+.|+..|+.+++++|...++.
T Consensus 561 e~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 561 EHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred hCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988
No 54
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.43 E-value=2.2e-14 Score=151.17 Aligned_cols=184 Identities=24% Similarity=0.372 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhhhhhHHHhhhccchHHHHHHHhc---CCchhHHHHHH
Q 003951 92 LIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMSTWFIFDVCSTAPLQFLALLLTN---NISELTFRLLN 168 (784)
Q Consensus 92 ~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~~~f~~Dlis~lP~~~i~~~~~~---~~~~~~~~il~ 168 (784)
..+|..+++||++-+++||..+ . | |-||++.+-|.+-|+.+.-.|.. +.++.. +|
T Consensus 165 qqidlafnifflvyffirfiaa---s-------d---------klwf~lemys~vdfftippsfvsiyl~r~wlg---lr 222 (1103)
T KOG1420|consen 165 QQIDLAFNIFFLVYFFIRFIAA---S-------D---------KLWFWLEMYSVVDFFTIPPSFVSIYLNRSWLG---LR 222 (1103)
T ss_pred HHhhhHhhHHHHHHHHHHHhhc---c-------c---------ceeeeeehhhheeeeecCchheEEEeccchHH---HH
Confidence 4689999999999999999766 1 1 33454444444333222211211 233334 56
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHH
Q 003951 169 MLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYV 248 (784)
Q Consensus 169 llrllRl~r~~~~~~~l~~~~~~~~~~~~~~~li~~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~ 248 (784)
++|.+|+..+..+++.+.-.- ...-+++..++.+++.++..+|.+.++++. +.+.|-+ +.+ +....|+
T Consensus 223 flralrlmtvpdilqylnilk--tsssirl~qlvsifisvwltaag~ihllen----sgdp~~~-----f~n-~hrltyw 290 (1103)
T KOG1420|consen 223 FLRALRLMTVPDILQYLNILK--TSSSIRLVQLVSIFISVWLTAAGFIHLLEN----SGDPWEN-----FQN-NHRLTYW 290 (1103)
T ss_pred HHHHHHhccHHHHHHHHHHHh--ccchhhHHHHHHHHHHHHHhhcceeehhhc----CCChhHh-----ccC-cccchhh
Confidence 666666666666655442211 112357778887777777777778777763 3445532 222 2235799
Q ss_pred HHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhHHHH
Q 003951 249 TAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNF 309 (784)
Q Consensus 249 ~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~~~~~ 309 (784)
.+.|+.++||+||||||+...|..+++|.+++++.|+.+||..+..|..++.+..+...+|
T Consensus 291 ~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggey 351 (1103)
T KOG1420|consen 291 ECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEY 351 (1103)
T ss_pred heeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCcee
Confidence 9999999999999999999999999999999999999999999999999887665433333
No 55
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.43 E-value=1.4e-13 Score=124.79 Aligned_cols=81 Identities=27% Similarity=0.327 Sum_probs=74.1
Q ss_pred hhh-hcCcc----cccCCCC-CCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHH
Q 003951 559 IEA-SKDQD----STACPVD-VNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDL 632 (784)
Q Consensus 559 ~a~-~~~~~----ll~~g~~-~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~l 632 (784)
.|+ .+.+. |++..++ +|.+|.+|.||||.|+.+||.+||+.|+..||+++++...||||||-||.-++.+++.+
T Consensus 69 waae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~ 148 (228)
T KOG0512|consen 69 WAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGR 148 (228)
T ss_pred HHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHH
Confidence 455 56665 7777666 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC
Q 003951 633 LLSYENR 639 (784)
Q Consensus 633 L~~~~~~ 639 (784)
|+++||+
T Consensus 149 LLqhgaD 155 (228)
T KOG0512|consen 149 LLQHGAD 155 (228)
T ss_pred HHhccCc
Confidence 9999998
No 56
>PHA03095 ankyrin-like protein; Provisional
Probab=99.43 E-value=1.5e-13 Score=156.64 Aligned_cols=129 Identities=18% Similarity=0.108 Sum_probs=97.9
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC-----------Cccccccccccc---CCCchhhhh-hcC-cc----cc
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD-----------SSMWETRNLNFL---GPQATDIEA-SKD-QD----ST 568 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~-----------~~~~~~~~~~~~---g~~~l~~a~-~~~-~~----ll 568 (784)
.+...++.|+ |++++..+..|+||||.+.. .+++.|.+++.. |.||+|+|+ .++ .+ |+
T Consensus 25 ~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl 104 (471)
T PHA03095 25 VTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLI 104 (471)
T ss_pred CCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHH
Confidence 3444455555 78888888888888886221 246677777765 888888888 443 34 78
Q ss_pred cCCCCCCCCCCCCccHHHHHH--HcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCC--ChhHHHHHHhcCCC
Q 003951 569 ACPVDVNSKVEDGQTELNAAN--QRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPV--NRSMYDLLLSYENR 639 (784)
Q Consensus 569 ~~g~~~~~~d~~g~T~Lh~A~--~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g--~~~i~~lL~~~~~~ 639 (784)
++|+++|.+|..|+||||+|+ ..++.+++++|+++||+++..|..|.||||.|+..+ +.+++++|+++|++
T Consensus 105 ~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~ 179 (471)
T PHA03095 105 KAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD 179 (471)
T ss_pred HcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC
Confidence 888888888888888888888 456788888888888888888888888888877655 57788888888877
No 57
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.43 E-value=9.3e-14 Score=139.29 Aligned_cols=114 Identities=12% Similarity=-0.035 Sum_probs=95.5
Q ss_pred hhhhhhhhc--cCCCCCCC-CCCCCCCCCCCC-----------Cccccccccccc---CCCchhhhhh---cCcc----c
Q 003951 512 PGIILHECI--GGPTIGSS-LSARHQDYPYGD-----------SSMWETRNLNFL---GPQATDIEAS---KDQD----S 567 (784)
Q Consensus 512 ~~~~l~~Ll--g~~~~~~d-~~g~t~l~~~~~-----------~~~~~~~~~~~~---g~~~l~~a~~---~~~~----l 567 (784)
....++.|+ |++++..+ ..|+||+|++.. .+++.|.+++.. |.||+|.|+. ++.+ |
T Consensus 65 ~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~L 144 (209)
T PHA02859 65 NVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLL 144 (209)
T ss_pred CHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHH
Confidence 456666666 89999986 479999997321 246778888876 8999999873 3445 8
Q ss_pred ccCCCCCCCCCCCCccHHHH-HHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCC
Q 003951 568 TACPVDVNSKVEDGQTELNA-ANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPV 625 (784)
Q Consensus 568 l~~g~~~~~~d~~g~T~Lh~-A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g 625 (784)
+++|+|+|.+|.+|.||||. |+..|+.+++++|+++||+++.+|..|+||+|+|..++
T Consensus 145 i~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 145 IDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred HHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence 99999999999999999996 56788999999999999999999999999999998764
No 58
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.43 E-value=1.5e-13 Score=156.99 Aligned_cols=126 Identities=14% Similarity=0.059 Sum_probs=76.2
Q ss_pred hhhhhhc--cCCCCCCCCCCCCCCCCCCC--------------Cccccccccccc---CCCchhhhh-h---cCcc----
Q 003951 514 IILHECI--GGPTIGSSLSARHQDYPYGD--------------SSMWETRNLNFL---GPQATDIEA-S---KDQD---- 566 (784)
Q Consensus 514 ~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------------~~~~~~~~~~~~---g~~~l~~a~-~---~~~~---- 566 (784)
..++.|+ |+|+|..+ .+.||+|.+.. .+++.|.+++.. |.||+|.|+ . ++.+
T Consensus 51 ~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~ 129 (494)
T PHA02989 51 KIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRF 129 (494)
T ss_pred HHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHH
Confidence 3444444 66666655 45677664211 234556666555 666776654 2 2333
Q ss_pred cccCCCCC-CCCCCCCccHHHHHHHc--CCHHHHHHHHhCCCCCCC-CCCCCCCchhhhccC----CChhHHHHHHhcCC
Q 003951 567 STACPVDV-NSKVEDGQTELNAANQR--GHIEMVKVLLEGGRNGNK-PDAKGWSPKAPAEQP----VNRSMYDLLLSYEN 638 (784)
Q Consensus 567 ll~~g~~~-~~~d~~g~T~Lh~A~~~--g~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~----g~~~i~~lL~~~~~ 638 (784)
|+++|+|+ +.+|..|+||||+|+.. ++.++|++|+++|||++. .|..|.||||.|+.. ++.+++++|+++|+
T Consensus 130 Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga 209 (494)
T PHA02989 130 LLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV 209 (494)
T ss_pred HHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCC
Confidence 66777777 56667777777766543 466777777777777766 456677777666543 36677777777776
Q ss_pred CC
Q 003951 639 RT 640 (784)
Q Consensus 639 ~~ 640 (784)
+.
T Consensus 210 ~v 211 (494)
T PHA02989 210 NI 211 (494)
T ss_pred Cc
Confidence 63
No 59
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.43 E-value=1e-13 Score=144.25 Aligned_cols=84 Identities=18% Similarity=0.103 Sum_probs=72.3
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCC-CCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSK-VEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVN 626 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~ 626 (784)
|.||+|+|+ .++.+ |+++|||+|.. +..|.||||.|+..|+.+++++|+++||+++.+|..|+||||+|+..++
T Consensus 70 g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~ 149 (300)
T PHA02884 70 KTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICN 149 (300)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC
Confidence 566777788 56666 88999999986 4689999999999999999999999999999999999999999999888
Q ss_pred hhHHHHHHhc
Q 003951 627 RSMYDLLLSY 636 (784)
Q Consensus 627 ~~i~~lL~~~ 636 (784)
.+++.++...
T Consensus 150 ~~~~~~~~~~ 159 (300)
T PHA02884 150 NFLAFMICDN 159 (300)
T ss_pred hhHHHHhcCC
Confidence 8887666543
No 60
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.43 E-value=1e-13 Score=164.69 Aligned_cols=119 Identities=15% Similarity=0.039 Sum_probs=83.0
Q ss_pred cCCCCCCCCCCCCCCCCCCC---------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCcc
Q 003951 521 GGPTIGSSLSARHQDYPYGD---------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQT 583 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~---------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T 583 (784)
|++++..|..|+||+|+|.. .++..|.+++.. |.||+|+|+ .++.+ |+++|++++..+..|.|
T Consensus 331 gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T 410 (682)
T PHA02876 331 GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGT 410 (682)
T ss_pred CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCc
Confidence 66777777777777776432 234555565554 677777777 55555 77777777777777777
Q ss_pred HHHHHHHcCC-HHHHHHHHhCCCCCCCCCCCCCCchhhhccCC-ChhHHHHHHhcCCC
Q 003951 584 ELNAANQRGH-IEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPV-NRSMYDLLLSYENR 639 (784)
Q Consensus 584 ~Lh~A~~~g~-~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g-~~~i~~lL~~~~~~ 639 (784)
|||+|+..++ ..++++|+++||++|.+|..|+||||+|+..| +.+++++|+++|++
T Consensus 411 ~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad 468 (682)
T PHA02876 411 ALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGAD 468 (682)
T ss_pred hHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCC
Confidence 7777776554 45677777777777777777777777777655 56777777777776
No 61
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.42 E-value=7.7e-14 Score=144.85 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=95.5
Q ss_pred cCCCCCCCCCCCCCCCCCC--------CCccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccH
Q 003951 521 GGPTIGSSLSARHQDYPYG--------DSSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTE 584 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~--------~~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~ 584 (784)
|++.|.+.....|||-.|. +.+.+++.+.++. |.|-|+.|| +|+.+ |++.|+|+|.++..|+||
T Consensus 107 ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTA 186 (615)
T KOG0508|consen 107 GASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTA 186 (615)
T ss_pred cCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchH
Confidence 5566655555556654321 1345555555544 777788888 88888 999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 585 LNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 585 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
||.|+..|++|++++|+++||.++. |..|.|||..|+..||.++++.|++...+
T Consensus 187 LH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~~~~s 240 (615)
T KOG0508|consen 187 LHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQCETS 240 (615)
T ss_pred HHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhcCCcc
Confidence 9999999999999999999999865 66799999999999999999999986554
No 62
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.42 E-value=6.9e-13 Score=142.07 Aligned_cols=175 Identities=19% Similarity=0.199 Sum_probs=138.4
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIG 448 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~ 448 (784)
.++++++|+|..++++.+.+|...++..+|.+||.|+..|.+..++|+|.+|.|+++. .+| .++..+..||.||..+
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~-~~g--~v~~~~~~gdlFg~~~ 82 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS-DGG--EVLDRLAAGDLFGFSS 82 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc-CCC--eeeeeeccCccccchh
Confidence 5688999999999999999999999999999999999999999999999999999984 233 3789999999999999
Q ss_pred hhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHh-hccccccCCCCChhhhhhhhccCCCCCC
Q 003951 449 VLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKD-QESIGFEYPTTDPGIILHECIGGPTIGS 527 (784)
Q Consensus 449 ~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~l~~Llg~~~~~~ 527 (784)
+++..+....+.+.+++.+|.|+++.|.++++++|++..++...+++|+++ -+....+....--...+.++.-.++-.+
T Consensus 83 l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~~~trv~~~~~~~~~~v 162 (610)
T COG2905 83 LFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKTLPAVTV 162 (610)
T ss_pred hcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhcCCCccc
Confidence 999988888899999999999999999999999999999999999999985 3333332111111222233333344444
Q ss_pred CCCCCCCCCCCCCCccccccc
Q 003951 528 SLSARHQDYPYGDSSMWETRN 548 (784)
Q Consensus 528 d~~g~t~l~~~~~~~~~~~~~ 548 (784)
...++.+.+...+.+.|.+
T Consensus 163 --~~~~~i~~aa~km~~~gv~ 181 (610)
T COG2905 163 --SPQASIQDAARKMKDEGVS 181 (610)
T ss_pred --CccCcHHHHHHHHHhcCCC
Confidence 2456655555555555554
No 63
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.41 E-value=2.3e-12 Score=116.29 Aligned_cols=115 Identities=27% Similarity=0.440 Sum_probs=104.7
Q ss_pred ccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhh--cCC
Q 003951 377 LFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVL--YYR 453 (784)
Q Consensus 377 lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l--~~~ 453 (784)
+|.+++++.++.++..++.+.|.+|++|+.+|+.++.+|+|.+|.++++ ...+|++..+..+.+|++||+.+++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 4788999999999999999999999999999999999999999999999 4467888899999999999999988 346
Q ss_pred CceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHH
Q 003951 454 PQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMN 491 (784)
Q Consensus 454 ~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~ 491 (784)
+...++.+.+.|+++.++.+.+...+..++.....+++
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 118 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELLL 118 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence 77899999999999999999999999999988766554
No 64
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.41 E-value=2e-13 Score=150.73 Aligned_cols=121 Identities=18% Similarity=0.115 Sum_probs=101.3
Q ss_pred cCCCCCCCCCCCCCCCCCCCC--------ccccccccc------------------ccCCCchhhhh-hcCcc----ccc
Q 003951 521 GGPTIGSSLSARHQDYPYGDS--------SMWETRNLN------------------FLGPQATDIEA-SKDQD----STA 569 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~~--------~~~~~~~~~------------------~~g~~~l~~a~-~~~~~----ll~ 569 (784)
++.+|-.+..|.||||.|.+. .++.+.... --|.||+|+|| +|+.+ |++
T Consensus 215 ~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~ 294 (929)
T KOG0510|consen 215 QTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLG 294 (929)
T ss_pred hcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHH
Confidence 456777788899999986652 122222111 11789999999 77777 999
Q ss_pred CCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHh-CC-CCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCCCC
Q 003951 570 CPVDVNSKVEDGQTELNAANQRGHIEMVKVLLE-GG-RNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENRTP 641 (784)
Q Consensus 570 ~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~~~ 641 (784)
.|+++|.++.++.||||.||..|+.++|+-||+ .| +..|..|-.|+||||+|+++||.+++++|++.||...
T Consensus 295 ~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~ 368 (929)
T KOG0510|consen 295 FGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL 368 (929)
T ss_pred cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence 999999999999999999999999999999999 55 6788999999999999999999999999999999843
No 65
>PHA02730 ankyrin-like protein; Provisional
Probab=99.41 E-value=2.6e-13 Score=153.58 Aligned_cols=127 Identities=18% Similarity=0.090 Sum_probs=103.8
Q ss_pred hhhhhhhhc--cCCCCCCCCCCCCCCCCCCC------------Ccccccc--ccccc---CCCchhh---hhhcC-----
Q 003951 512 PGIILHECI--GGPTIGSSLSARHQDYPYGD------------SSMWETR--NLNFL---GPQATDI---EASKD----- 564 (784)
Q Consensus 512 ~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~------------~~~~~~~--~~~~~---g~~~l~~---a~~~~----- 564 (784)
....++-|+ |++.+.. ..|+||||+|.. .++.+|+ +++.. |.||+|. |+.++
T Consensus 358 ~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~ 436 (672)
T PHA02730 358 SIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHC 436 (672)
T ss_pred cHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccc
Confidence 345555555 9999986 689999996321 3456666 45544 8999983 33221
Q ss_pred --------cc-cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCchhhhcc--CCChhHHHH
Q 003951 565 --------QD-STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDA-KGWSPKAPAEQ--PVNRSMYDL 632 (784)
Q Consensus 565 --------~~-ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~--~g~~~i~~l 632 (784)
.+ |+.+|+|+|.+|..|.||||+|+..++.+++++|+++||++|.+|. .|+||||.|+. .|+.+++++
T Consensus 437 ~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~ 516 (672)
T PHA02730 437 YETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDL 516 (672)
T ss_pred cchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHH
Confidence 23 8999999999999999999999999999999999999999999997 59999999987 489999999
Q ss_pred HHhcCCC
Q 003951 633 LLSYENR 639 (784)
Q Consensus 633 L~~~~~~ 639 (784)
|+++|+.
T Consensus 517 LLs~ga~ 523 (672)
T PHA02730 517 LLSYHPT 523 (672)
T ss_pred HHHcCCC
Confidence 9999988
No 66
>PHA02798 ankyrin-like protein; Provisional
Probab=99.41 E-value=1.9e-13 Score=155.90 Aligned_cols=128 Identities=18% Similarity=0.121 Sum_probs=109.0
Q ss_pred hhhhhhhhc--cCCCCCCCCCCCCCCCCCCC-------------Cccccccccccc---CCCchhhhhhc----Ccc---
Q 003951 512 PGIILHECI--GGPTIGSSLSARHQDYPYGD-------------SSMWETRNLNFL---GPQATDIEASK----DQD--- 566 (784)
Q Consensus 512 ~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~-------------~~~~~~~~~~~~---g~~~l~~a~~~----~~~--- 566 (784)
....++.|+ |++++..|..|.||||.+.. .+++.|.+++.. |.||+|.|+.+ +.+
T Consensus 50 ~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~ 129 (489)
T PHA02798 50 STDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILL 129 (489)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHH
Confidence 445566666 99999999999999986421 357788888876 99999999953 334
Q ss_pred -cccCCCCCCCCCCCCccHHHHHHHcCC---HHHHHHHHhCCCCCCCCC-CCCCCchhhhcc----CCChhHHHHHHhcC
Q 003951 567 -STACPVDVNSKVEDGQTELNAANQRGH---IEMVKVLLEGGRNGNKPD-AKGWSPKAPAEQ----PVNRSMYDLLLSYE 637 (784)
Q Consensus 567 -ll~~g~~~~~~d~~g~T~Lh~A~~~g~---~~~v~~Ll~~ga~~~~~d-~~g~tpl~~A~~----~g~~~i~~lL~~~~ 637 (784)
|+++|+|+|..|.+|.||||+|+..|+ .+++++|+++|||++.++ ..|.||||.|.. .++.+++++|+++|
T Consensus 130 ~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~G 209 (489)
T PHA02798 130 FMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNG 209 (489)
T ss_pred HHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCC
Confidence 889999999999999999999999998 999999999999999885 579999998865 45899999999999
Q ss_pred CC
Q 003951 638 NR 639 (784)
Q Consensus 638 ~~ 639 (784)
+.
T Consensus 210 a~ 211 (489)
T PHA02798 210 FI 211 (489)
T ss_pred CC
Confidence 87
No 67
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.40 E-value=2.4e-13 Score=143.16 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=129.0
Q ss_pred HHHHhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCC
Q 003951 363 IAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGD 442 (784)
Q Consensus 363 i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~ 442 (784)
=..++.++.+++..+++++..+.+++++.+|.+..|.+|+.|+++||++..+|.+.+|+++|.. .++.+..+++|.
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~----~g~ll~~m~~gt 222 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR----EGKLLGKMGAGT 222 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee----CCeeeeccCCch
Confidence 3455667888889999999999999999999999999999999999999999999999999984 346789999999
Q ss_pred eeehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 443 AFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 443 ~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
.|||+++|++.+|+++++|.+++++|.|+|+.|+.+++........-..++++.....+++..+...+.++.+-...+
T Consensus 223 vFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Y 300 (732)
T KOG0614|consen 223 VFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYY 300 (732)
T ss_pred hhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988776655555566666666666655544444444444333
No 68
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.39 E-value=2.3e-13 Score=110.26 Aligned_cols=78 Identities=26% Similarity=0.306 Sum_probs=70.9
Q ss_pred hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcC
Q 003951 562 SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYE 637 (784)
Q Consensus 562 ~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~ 637 (784)
+|..+ .+..|.|+|..- .|+||||+||..|+.++.++|+..||+++.+|+.|-|||--|+..||.++|++|++.|
T Consensus 12 NG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~G 90 (117)
T KOG4214|consen 12 NGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNG 90 (117)
T ss_pred cCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcC
Confidence 45555 667788888655 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 003951 638 NRT 640 (784)
Q Consensus 638 ~~~ 640 (784)
|++
T Consensus 91 Adr 93 (117)
T KOG4214|consen 91 ADR 93 (117)
T ss_pred ccc
Confidence 984
No 69
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.37 E-value=5.6e-13 Score=158.43 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=91.9
Q ss_pred cCCCCCCCCCCCCCCCCCCC---------Cccccccccccc---CCCchhhhhh-cCc-c----cccCCCCCCCCCCCCc
Q 003951 521 GGPTIGSSLSARHQDYPYGD---------SSMWETRNLNFL---GPQATDIEAS-KDQ-D----STACPVDVNSKVEDGQ 582 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~---------~~~~~~~~~~~~---g~~~l~~a~~-~~~-~----ll~~g~~~~~~d~~g~ 582 (784)
|++++..|.+|+||+|+|.. .++..|.+++.. |.||+|+|+. ++. + |++.|+++|.+|..|+
T Consensus 297 gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~ 376 (682)
T PHA02876 297 GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK 376 (682)
T ss_pred CCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCC
Confidence 77888888888888887443 134555566554 7888888883 332 2 7788888888888888
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCC-hhHHHHHHhcCCC
Q 003951 583 TELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVN-RSMYDLLLSYENR 639 (784)
Q Consensus 583 T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~-~~i~~lL~~~~~~ 639 (784)
||||+|+..|+.+++++|+++||+++..+..|.||||+|+..++ ..++++|++.|++
T Consensus 377 TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad 434 (682)
T PHA02876 377 TPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGAN 434 (682)
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCC
Confidence 88888888888888888888888888888888888888876554 4668888888887
No 70
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.36 E-value=1.1e-12 Score=132.95 Aligned_cols=129 Identities=22% Similarity=0.328 Sum_probs=114.8
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIG 448 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~ 448 (784)
...+++.-+|.+++++.+.++...|.++.+..|+.|+.||+.++.+|+|.+|+++|+.. ...+..+.+|..|||++
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~----~~~v~~~~~g~sFGElA 196 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN----GTYVTTYSPGGSFGELA 196 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC----CeEEeeeCCCCchhhhH
Confidence 45677788999999999999999999999999999999999999999999999999952 34588999999999999
Q ss_pred hhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhc
Q 003951 449 VLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQE 501 (784)
Q Consensus 449 ~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~ 501 (784)
++++.||.+|+.|++++.+|.|++.+|..++-.+-.-.+.++..+.+...-++
T Consensus 197 Lmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pil~ 249 (368)
T KOG1113|consen 197 LMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPILE 249 (368)
T ss_pred hhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcchhhH
Confidence 99999999999999999999999999999988877777777776666544433
No 71
>PHA02795 ankyrin-like protein; Provisional
Probab=99.36 E-value=3.3e-13 Score=145.86 Aligned_cols=119 Identities=13% Similarity=-0.058 Sum_probs=103.3
Q ss_pred cCCCC------CCCCCCCCCCCCCCC----------Cccccccccccc-CCCchhhhh-hcCcc----cccCCCCCCCCC
Q 003951 521 GGPTI------GSSLSARHQDYPYGD----------SSMWETRNLNFL-GPQATDIEA-SKDQD----STACPVDVNSKV 578 (784)
Q Consensus 521 g~~~~------~~d~~g~t~l~~~~~----------~~~~~~~~~~~~-g~~~l~~a~-~~~~~----ll~~g~~~~~~d 578 (784)
|++++ ..+..++|+||.+.. .++++|++++.. +.||+|.|+ .++.+ |+++|++.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~ 179 (437)
T PHA02795 100 NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDV 179 (437)
T ss_pred ccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccc
Confidence 77877 777789999997332 468999999875 689999999 56666 999998543332
Q ss_pred ------CCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 579 ------EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 579 ------~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
..|.||+|.|+..|+.+++++|+++|||+|.+|..|+||||+|+..|+.+++++|+++||+
T Consensus 180 ~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd 246 (437)
T PHA02795 180 KLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN 246 (437)
T ss_pred cchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 3488999999999999999999999999999999999999999999999999999999998
No 72
>PHA02917 ankyrin-like protein; Provisional
Probab=99.36 E-value=1.3e-12 Score=151.66 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=101.5
Q ss_pred hhhhhhc--cCCCCCCCCCCCCCCCCCCC----Ccc-ccccccccc---CCCchhhhhhcC-------------------
Q 003951 514 IILHECI--GGPTIGSSLSARHQDYPYGD----SSM-WETRNLNFL---GPQATDIEASKD------------------- 564 (784)
Q Consensus 514 ~~l~~Ll--g~~~~~~d~~g~t~l~~~~~----~~~-~~~~~~~~~---g~~~l~~a~~~~------------------- 564 (784)
..++.|+ |++++.++.+|.|+....+. .++ ..|++++.. |.||||.||++.
T Consensus 347 ~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~ 426 (661)
T PHA02917 347 PLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMS 426 (661)
T ss_pred HHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhh
Confidence 3455555 88888888888886432221 223 345554433 888888877321
Q ss_pred -----c---c-cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhcc-CCChhHHHHHH
Q 003951 565 -----Q---D-STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQ-PVNRSMYDLLL 634 (784)
Q Consensus 565 -----~---~-ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~-~g~~~i~~lL~ 634 (784)
. + |+.+|+|+|.+|..|.||||.|+..++.+++++|+++|||+|.+|..|+||||+|+. .++.+++++|+
T Consensus 427 ~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL 506 (661)
T PHA02917 427 YACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLL 506 (661)
T ss_pred hhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHH
Confidence 1 2 889999999999999999999999999999999999999999999999999999995 78999999999
Q ss_pred hcCCC
Q 003951 635 SYENR 639 (784)
Q Consensus 635 ~~~~~ 639 (784)
+++++
T Consensus 507 ~~ga~ 511 (661)
T PHA02917 507 CHKPT 511 (661)
T ss_pred HcCCC
Confidence 99987
No 73
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.35 E-value=8.9e-13 Score=101.14 Aligned_cols=54 Identities=37% Similarity=0.520 Sum_probs=46.8
Q ss_pred CccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHH
Q 003951 581 GQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLL 634 (784)
Q Consensus 581 g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~ 634 (784)
|+||||.|+..|+.+++++|+++|+|+|.+|.+|+||||.|+..||.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 789999999999999999999999999999999999999999999999999985
No 74
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.34 E-value=1.4e-12 Score=135.85 Aligned_cols=84 Identities=15% Similarity=0.066 Sum_probs=76.1
Q ss_pred chhhhh-hcCcc----cccCCCCCCCCC----CCCccHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCchhhhccCC
Q 003951 556 ATDIEA-SKDQD----STACPVDVNSKV----EDGQTELNAANQRGHIEMVKVLLEGGRNGNKP-DAKGWSPKAPAEQPV 625 (784)
Q Consensus 556 ~l~~a~-~~~~~----ll~~g~~~~~~d----~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~g 625 (784)
+++.|+ .++.+ |+++|+|+|.++ ..|.||||+|+..|+.+++++|+++|||+|.+ +..|.||||.|+..|
T Consensus 36 lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~ 115 (300)
T PHA02884 36 ILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHG 115 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcC
Confidence 555566 46666 999999999974 68999999999999999999999999999996 468999999999999
Q ss_pred ChhHHHHHHhcCCC
Q 003951 626 NRSMYDLLLSYENR 639 (784)
Q Consensus 626 ~~~i~~lL~~~~~~ 639 (784)
+.+++++|+.+|++
T Consensus 116 ~~eivklLL~~GAd 129 (300)
T PHA02884 116 CLKCLEILLSYGAD 129 (300)
T ss_pred CHHHHHHHHHCCCC
Confidence 99999999999998
No 75
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.33 E-value=6e-13 Score=141.41 Aligned_cols=128 Identities=17% Similarity=0.205 Sum_probs=97.9
Q ss_pred hhhhhhhhc--cCCCCCCCCCCCCCCCCCCCC--------ccccccccccc----------CCCchhh-----hh-hcCc
Q 003951 512 PGIILHECI--GGPTIGSSLSARHQDYPYGDS--------SMWETRNLNFL----------GPQATDI-----EA-SKDQ 565 (784)
Q Consensus 512 ~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~~--------~~~~~~~~~~~----------g~~~l~~-----a~-~~~~ 565 (784)
...++..++ |++.|..|..|+||+|.+..+ ++..|.++... |.++-.. +. +.+.
T Consensus 85 ~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi 164 (527)
T KOG0505|consen 85 NLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGI 164 (527)
T ss_pred cHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcc
Confidence 345555666 999999999999999975442 12233222221 2111111 11 1111
Q ss_pred c------------------cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 566 D------------------STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 566 ~------------------ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
+ .+..|.+.+..+..|.|+||+|+.+|..++.++|+++|.+++.+|.+||||||.|+..|+.
T Consensus 165 ~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~ 244 (527)
T KOG0505|consen 165 DIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQE 244 (527)
T ss_pred cHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhH
Confidence 1 4568999999998899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++|+.
T Consensus 245 ~~~elL~~~ga~ 256 (527)
T KOG0505|consen 245 DACELLVEHGAD 256 (527)
T ss_pred hHHHHHHHhhcc
Confidence 999999999998
No 76
>PHA02917 ankyrin-like protein; Provisional
Probab=99.33 E-value=1.1e-12 Score=152.36 Aligned_cols=130 Identities=13% Similarity=0.061 Sum_probs=100.5
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCCC------------cccccccccccCC-Cchhhhh-hcCcc----cccC
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGDS------------SMWETRNLNFLGP-QATDIEA-SKDQD----STAC 570 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~~------------~~~~~~~~~~~g~-~~l~~a~-~~~~~----ll~~ 570 (784)
+....++.|+ |++++..|..|+||||.|... ++..++.++..+. .++++|+ .++.+ |+++
T Consensus 46 ~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~ 125 (661)
T PHA02917 46 NNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEH 125 (661)
T ss_pred CcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHc
Confidence 4456666666 999999999999999974321 2233444455543 3445566 45666 8999
Q ss_pred CCCCCCCCCCCccHHHHHH--HcCCHHHHHHHHhCCCCCCCCCC---CC-----------CCchhhhcc-----------
Q 003951 571 PVDVNSKVEDGQTELNAAN--QRGHIEMVKVLLEGGRNGNKPDA---KG-----------WSPKAPAEQ----------- 623 (784)
Q Consensus 571 g~~~~~~d~~g~T~Lh~A~--~~g~~~~v~~Ll~~ga~~~~~d~---~g-----------~tpl~~A~~----------- 623 (784)
|+|+|.+|.+|+||||.|+ ..|+.++|++|+++||++|.+|. .| .||||+|+.
T Consensus 126 Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~ 205 (661)
T PHA02917 126 GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRA 205 (661)
T ss_pred CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccc
Confidence 9999999999999999654 47899999999999999987654 34 599999975
Q ss_pred CCChhHHHHHHhcCCCC
Q 003951 624 PVNRSMYDLLLSYENRT 640 (784)
Q Consensus 624 ~g~~~i~~lL~~~~~~~ 640 (784)
.|+.+++++|+++|++.
T Consensus 206 ~~~~eiv~~Li~~Gadv 222 (661)
T PHA02917 206 YVRPEVVKCLINHGIKP 222 (661)
T ss_pred cCcHHHHHHHHHCCCCc
Confidence 46899999999999983
No 77
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.2e-12 Score=137.32 Aligned_cols=80 Identities=31% Similarity=0.368 Sum_probs=74.2
Q ss_pred hh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHH
Q 003951 560 EA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLL 634 (784)
Q Consensus 560 a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~ 634 (784)
|+ .|.+| .+..--|+..++..|-||||-|++.||.++|+||++.|||+|+.|.+||||||.|+.+++..+++.|+
T Consensus 557 aaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLV 636 (752)
T KOG0515|consen 557 AALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLV 636 (752)
T ss_pred hhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHH
Confidence 44 78888 45555688999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC
Q 003951 635 SYENR 639 (784)
Q Consensus 635 ~~~~~ 639 (784)
+.|+-
T Consensus 637 e~Gaa 641 (752)
T KOG0515|consen 637 ESGAA 641 (752)
T ss_pred hccce
Confidence 99987
No 78
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.33 E-value=9e-12 Score=123.74 Aligned_cols=104 Identities=13% Similarity=0.268 Sum_probs=95.0
Q ss_pred CCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCCCc--eeEEEEccceEEEEecHHHHHH
Q 003951 401 KEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYRPQ--PFTVRTTELSQILRLSRTSLMN 477 (784)
Q Consensus 401 ~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~--~~tv~a~~~~~l~~l~~~~f~~ 477 (784)
|+.|+.+||+.+.+|+|.+|.|+++ ...+|++.++..+.+|++||+.+++.+.+. .++++|.++|+++.+++++|.+
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 6899999999999999999999999 567899999999999999999999887754 5789999999999999999999
Q ss_pred HHHhcHHHHHHHHHHHHHHHHhhcccc
Q 003951 478 SIQANMEDGRIVMNNLFRKLKDQESIG 504 (784)
Q Consensus 478 ll~~~p~~~~~~~~~l~~~l~~~~~~~ 504 (784)
++.++|.+...+++.+.+++.......
T Consensus 81 l~~~~p~l~~~~~~~l~~~l~~~~~~~ 107 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSRILQTEMMI 107 (193)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988755444
No 79
>PHA02741 hypothetical protein; Provisional
Probab=99.32 E-value=2.1e-12 Score=125.15 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=78.9
Q ss_pred cCCCchhhhh-hcCcc----c---c---cCCCCCCCCCCCCccHHHHHHHcCC----HHHHHHHHhCCCCCCCCCC-CCC
Q 003951 552 LGPQATDIEA-SKDQD----S---T---ACPVDVNSKVEDGQTELNAANQRGH----IEMVKVLLEGGRNGNKPDA-KGW 615 (784)
Q Consensus 552 ~g~~~l~~a~-~~~~~----l---l---~~g~~~~~~d~~g~T~Lh~A~~~g~----~~~v~~Ll~~ga~~~~~d~-~g~ 615 (784)
.|.+++|.|| .|+.+ + + ..|+++|.+|..|.||||+|+..|+ .+++++|+++||++|.+|. .|+
T Consensus 20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~ 99 (169)
T PHA02741 20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGD 99 (169)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCC
Confidence 3899999999 77777 2 2 3479999999999999999999999 5899999999999999985 999
Q ss_pred CchhhhccCCChhHHHHHHh-cCCC
Q 003951 616 SPKAPAEQPVNRSMYDLLLS-YENR 639 (784)
Q Consensus 616 tpl~~A~~~g~~~i~~lL~~-~~~~ 639 (784)
||||+|+..|+.+++++|+. .|++
T Consensus 100 TpLh~A~~~~~~~iv~~Ll~~~g~~ 124 (169)
T PHA02741 100 TALHLAAHRRDHDLAEWLCCQPGID 124 (169)
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 99999999999999999997 4766
No 80
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.31 E-value=1.7e-11 Score=125.11 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=110.2
Q ss_pred HHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceE
Q 003951 388 QLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQ 466 (784)
Q Consensus 388 ~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~ 466 (784)
.+....+.+.|++||.|+.+||.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+. .+.++.++++|.++|+
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~ 109 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTT 109 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceE
Confidence 45566788999999999999999999999999999999 5678999999999999999964 4667889999999999
Q ss_pred EEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 467 ILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 467 l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
++.++++.|.+++..+|++...+++.+.+++.................++..++
T Consensus 110 v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L 163 (230)
T PRK09391 110 VRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFL 163 (230)
T ss_pred EEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999999999999999887554443334445555555444
No 81
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.30 E-value=2.8e-12 Score=123.70 Aligned_cols=87 Identities=9% Similarity=-0.013 Sum_probs=77.8
Q ss_pred CCCchhhhh-hcCcc--------cccCCCCCCCCCCCCccHHHHHHHcCCHHH---HHHHHhCCCCCCCCC-CCCCCchh
Q 003951 553 GPQATDIEA-SKDQD--------STACPVDVNSKVEDGQTELNAANQRGHIEM---VKVLLEGGRNGNKPD-AKGWSPKA 619 (784)
Q Consensus 553 g~~~l~~a~-~~~~~--------ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~---v~~Ll~~ga~~~~~d-~~g~tpl~ 619 (784)
+.+++|.|| .++.+ |++.|++++.+|.+|+||||+|+..|+.+. +++|+++||++|.+| ..|+||||
T Consensus 20 ~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh 99 (166)
T PHA02743 20 EQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLH 99 (166)
T ss_pred CCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHH
Confidence 667899998 67763 568999999999999999999999988654 899999999999998 58999999
Q ss_pred hhccCCChhHHHHHHh-cCCC
Q 003951 620 PAEQPVNRSMYDLLLS-YENR 639 (784)
Q Consensus 620 ~A~~~g~~~i~~lL~~-~~~~ 639 (784)
+|+..|+.+++++|+. .|++
T Consensus 100 ~A~~~g~~~iv~~Ll~~~gad 120 (166)
T PHA02743 100 IAASTKNYELAEWLCRQLGVN 120 (166)
T ss_pred HHHHhCCHHHHHHHHhccCCC
Confidence 9999999999999995 7877
No 82
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.28 E-value=2.9e-12 Score=125.06 Aligned_cols=87 Identities=22% Similarity=0.139 Sum_probs=55.0
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|-+|||+|| .|+.. |+..|+.+|..+.-..||||+||.+||.++|+.|++..||+|+.|.+|+||||+||.-|..
T Consensus 34 gfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgyd 113 (448)
T KOG0195|consen 34 GFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYD 113 (448)
T ss_pred CcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHH
Confidence 344555555 23332 6666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
.|++=|+++||.
T Consensus 114 qiaedli~~ga~ 125 (448)
T KOG0195|consen 114 QIAEDLISCGAA 125 (448)
T ss_pred HHHHHHHhccce
Confidence 666666666665
No 83
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.27 E-value=3.8e-12 Score=115.58 Aligned_cols=84 Identities=23% Similarity=0.208 Sum_probs=72.6
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCC-
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVN- 626 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~- 626 (784)
|.||||-|+ .|.++ |+..||+++++...|+||||-||.-++.+++.+||++|||+|+.....+||||+|+.+.+
T Consensus 97 ~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~ 176 (228)
T KOG0512|consen 97 EYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNS 176 (228)
T ss_pred cccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccch
Confidence 455677778 67777 999999999999999999999999999999999999999999999999999999998765
Q ss_pred hhHHHHHHhc
Q 003951 627 RSMYDLLLSY 636 (784)
Q Consensus 627 ~~i~~lL~~~ 636 (784)
...+.+|+..
T Consensus 177 r~t~~~Ll~d 186 (228)
T KOG0512|consen 177 RDTLELLLHD 186 (228)
T ss_pred HHHHHHHhhc
Confidence 4455555543
No 84
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.27 E-value=1.2e-11 Score=116.53 Aligned_cols=115 Identities=18% Similarity=0.120 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCCCCCc--------cc---ccccccccCCCchhhhh-hcCcc--cccCCCCCCCCCCCCccHHHHHHH
Q 003951 525 IGSSLSARHQDYPYGDSS--------MW---ETRNLNFLGPQATDIEA-SKDQD--STACPVDVNSKVEDGQTELNAANQ 590 (784)
Q Consensus 525 ~~~d~~g~t~l~~~~~~~--------~~---~~~~~~~~g~~~l~~a~-~~~~~--ll~~g~~~~~~d~~g~T~Lh~A~~ 590 (784)
.++|-+|+.++|.+.++. +. .+..+.+.+.+++.++. +..++ ++.....+|..|+.|.|||++|+.
T Consensus 90 ~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa 169 (296)
T KOG0502|consen 90 DETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAA 169 (296)
T ss_pred CCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHh
Confidence 344556777777655532 11 22233333555555555 44444 333444456666666666666666
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 591 RGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 591 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.|++++|+|||+.||||+..-+...|+|.+|+..|..+|+++|+..+.+
T Consensus 170 ~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vd 218 (296)
T KOG0502|consen 170 KGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVD 218 (296)
T ss_pred cCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC
Confidence 6666666666666666655555555555555555555555555555544
No 85
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.27 E-value=3.3e-12 Score=120.27 Aligned_cols=119 Identities=17% Similarity=0.051 Sum_probs=90.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCc------cccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHH
Q 003951 521 GGPTIGSSLSARHQDYPYGDSS------MWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELN 586 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~~~------~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh 586 (784)
|+.-|+.+.-+.+|+.++...+ +.....++.+ |.|||.+|+ .|++. |++.|+|++.-.+...|||.
T Consensus 119 ~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALs 198 (296)
T KOG0502|consen 119 GARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALS 198 (296)
T ss_pred cccCCccccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHh
Confidence 4455666666677755532211 1122233333 778888877 77777 88888888888888888888
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 587 AANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 587 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|+..|..++|++||.++.|+|.-|-+|-|||-+|++.||.++++.|++.||.
T Consensus 199 LAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd 251 (296)
T KOG0502|consen 199 LATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGAD 251 (296)
T ss_pred HHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCC
Confidence 88888888888888888888888888888888888888888888888888888
No 86
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.26 E-value=2.7e-11 Score=100.93 Aligned_cols=77 Identities=27% Similarity=0.576 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHH
Q 003951 205 TLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFN 284 (784)
Q Consensus 205 ~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g 284 (784)
++++.++.++++|.+.+. ... ..|.+|+||+++|+||+||||+.|.++.+++++++.+++|
T Consensus 2 ~~~~~l~~~~~~~~~~~~----~~~---------------~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G 62 (79)
T PF07885_consen 2 ILLLVLAFGAIFFYISEG----SEK---------------WSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIG 62 (79)
T ss_dssp HHHHHHHHHHHHHHHTTS----SST---------------TSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHH
T ss_pred EEEeeeHHHHHHHHHHHh----ccc---------------CCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHH
Confidence 345567778888877211 111 2478999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHH
Q 003951 285 LGLTSYIIGNMTNLVV 300 (784)
Q Consensus 285 ~~~~a~~ig~i~~ii~ 300 (784)
+.++++.++.+++.+.
T Consensus 63 ~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 63 IFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988764
No 87
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.25 E-value=4.2e-12 Score=123.96 Aligned_cols=119 Identities=16% Similarity=0.077 Sum_probs=99.7
Q ss_pred cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccH
Q 003951 521 GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTE 584 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~ 584 (784)
..|.|.-|..|-+||||+.. .++..|..++.. +.+|||+|+ .|+.+ |++..+|+|+.++.|+||
T Consensus 24 ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntp 103 (448)
T KOG0195|consen 24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTP 103 (448)
T ss_pred ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCc
Confidence 34666678889999999654 346677777766 678999999 78877 999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 585 LNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 585 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
||+||.-|+-.+++-|+..||.++..|++|.|||+-|.-.-...+.++-.++|.+
T Consensus 104 lhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~ 158 (448)
T KOG0195|consen 104 LHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQS 158 (448)
T ss_pred hhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999988755445555555666655
No 88
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.20 E-value=1.7e-11 Score=129.36 Aligned_cols=122 Identities=23% Similarity=0.336 Sum_probs=110.1
Q ss_pred HhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeec--CceeEEEEecCCCe
Q 003951 366 YLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVD--GQDKVLGKAVAGDA 443 (784)
Q Consensus 366 ~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~--g~~~~~~~l~~G~~ 443 (784)
+-+..+|+++|+|++++++.+..++..++..+|..|++|++||+.++.+|+|.+|.|.+....+ ++++.+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 3467899999999999999999999999999999999999999999999999999999984433 45677899999999
Q ss_pred eehhhhhcCCCceeEEEEccc-eEEEEecHHHHHHHHHhcHHHHH
Q 003951 444 FGEIGVLYYRPQPFTVRTTEL-SQILRLSRTSLMNSIQANMEDGR 487 (784)
Q Consensus 444 fGe~~~l~~~~~~~tv~a~~~-~~l~~l~~~~f~~ll~~~p~~~~ 487 (784)
|||-+++....|++++.|... ++++.|+|+.|.+++....+..+
T Consensus 348 FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~e 392 (732)
T KOG0614|consen 348 FGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKE 392 (732)
T ss_pred hhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhh
Confidence 999999999999999999887 99999999999999877666554
No 89
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.19 E-value=1.1e-10 Score=116.83 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=89.2
Q ss_pred cCcccccccCCeEEecCC--CCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEE
Q 003951 392 DMDAEYFPPKEDVILQNE--APTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQIL 468 (784)
Q Consensus 392 ~~~~~~~~~~e~I~~~g~--~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~ 468 (784)
..+...|++|+.|+.+|| .++.+|+|++|.|+++ ...+|++.++..+.+|++||+..++ +.+++++++|.++|+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 456788999999999999 7799999999999999 5678999999999999999997654 57889999999999999
Q ss_pred EecHHHHHHHHHhcHHHHHHHHHHHHHHHHhh
Q 003951 469 RLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQ 500 (784)
Q Consensus 469 ~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~ 500 (784)
.|+++.| +|++...++..+.+++...
T Consensus 84 ~i~~~~~------~~~~~~~l~~~l~~~~~~~ 109 (202)
T PRK13918 84 VLNPALM------SAEDNLVLTQHLVRTLARA 109 (202)
T ss_pred EEEHHHc------ChhhHHHHHHHHHHHHHHH
Confidence 9999987 5777777877777776653
No 90
>PHA02792 ankyrin-like protein; Provisional
Probab=99.16 E-value=3.5e-11 Score=135.01 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=66.9
Q ss_pred cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhcc----------CCChhHHHHHHhc
Q 003951 567 STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQ----------PVNRSMYDLLLSY 636 (784)
Q Consensus 567 ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~----------~g~~~i~~lL~~~ 636 (784)
++.+|+|+|.+|..|.||||.|+..|+.+++++|+++||+++.+|..|+|||+.|+. ..+.+++++|+++
T Consensus 396 LIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~ 475 (631)
T PHA02792 396 CKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSK 475 (631)
T ss_pred HHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 679999999999999999999999999999999999999999999999999999975 2235679999999
Q ss_pred CCC
Q 003951 637 ENR 639 (784)
Q Consensus 637 ~~~ 639 (784)
++.
T Consensus 476 ~p~ 478 (631)
T PHA02792 476 LPT 478 (631)
T ss_pred CCC
Confidence 976
No 91
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.16 E-value=1.6e-10 Score=128.20 Aligned_cols=113 Identities=16% Similarity=0.077 Sum_probs=101.7
Q ss_pred hhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEE-eecCceeEEEEecCCCeeehhh
Q 003951 370 PIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIH-YVDGQDKVLGKAVAGDAFGEIG 448 (784)
Q Consensus 370 ~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~ 448 (784)
++++++++|++++++.+++|...++.+.|++||+|+++||..+.+|+|.+|.|+++. ..+| +.++..+++|++||+.
T Consensus 8 ~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG~~- 85 (413)
T PLN02868 8 EFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFGYG- 85 (413)
T ss_pred HHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEeehh-
Confidence 567889999999999999999999999999999999999999999999999999994 3445 7788999999999985
Q ss_pred hhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHH
Q 003951 449 VLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMED 485 (784)
Q Consensus 449 ~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~ 485 (784)
+.+.+++.+++|.++|+++.|+++.|..+...++-.
T Consensus 86 -l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~ 121 (413)
T PLN02868 86 -LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSIWD 121 (413)
T ss_pred -hCCCCcccEEEECCCEEEEEEcHHHHhhhccccccc
Confidence 678899999999999999999999998886665433
No 92
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.16 E-value=2.1e-11 Score=123.19 Aligned_cols=128 Identities=22% Similarity=0.206 Sum_probs=107.2
Q ss_pred Chhhhhhhhc---cCCCCCCCCCCCCCCCCCC--------C----Cccccccccccc----CCCchhhhh-hcCcc----
Q 003951 511 DPGIILHECI---GGPTIGSSLSARHQDYPYG--------D----SSMWETRNLNFL----GPQATDIEA-SKDQD---- 566 (784)
Q Consensus 511 ~~~~~l~~Ll---g~~~~~~d~~g~t~l~~~~--------~----~~~~~~~~~~~~----g~~~l~~a~-~~~~~---- 566 (784)
..-..+..|| -|+.+..+..|-||...+. + .-+-.-|+||.+ |.|+|++|+ .|+.+
T Consensus 279 aNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~ 358 (452)
T KOG0514|consen 279 ANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKA 358 (452)
T ss_pred cchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHH
Confidence 3344555666 5678888888999854411 1 114455778877 999999999 88888
Q ss_pred cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCC
Q 003951 567 STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEG-GRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYEN 638 (784)
Q Consensus 567 ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~ 638 (784)
||.+|||||.+|.+|.||||+||.+||.|+|++||.. ++|+...|.+|.|+|.+|...||.||.-+|-.+..
T Consensus 359 LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n 431 (452)
T KOG0514|consen 359 LLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHMN 431 (452)
T ss_pred HHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999975 79999999999999999999999999999987764
No 93
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.15 E-value=3.2e-11 Score=97.90 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=64.4
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|++|+|+|+ .|.+. ++.-|++++.+|+.|-|||--|+.+||.+||++|+++|||-.....+|.+.+..+. +.
T Consensus 34 gR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eate---~e 110 (117)
T KOG4214|consen 34 GRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEATE---EE 110 (117)
T ss_pred CcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhcc---HH
Confidence 556666666 66666 88999999999999999999999999999999999999999988888987766554 34
Q ss_pred hHHHHH
Q 003951 628 SMYDLL 633 (784)
Q Consensus 628 ~i~~lL 633 (784)
+|-++|
T Consensus 111 dIr~LL 116 (117)
T KOG4214|consen 111 DIRELL 116 (117)
T ss_pred HHHHHh
Confidence 555544
No 94
>PHA02730 ankyrin-like protein; Provisional
Probab=99.15 E-value=3.9e-11 Score=136.15 Aligned_cols=99 Identities=10% Similarity=0.002 Sum_probs=83.0
Q ss_pred Cccccccccccc--CCCchhhhh-hcC----cc----cccCCC--CCCCCCCCCccHHHH---HHHcC---------CHH
Q 003951 541 SSMWETRNLNFL--GPQATDIEA-SKD----QD----STACPV--DVNSKVEDGQTELNA---ANQRG---------HIE 595 (784)
Q Consensus 541 ~~~~~~~~~~~~--g~~~l~~a~-~~~----~~----ll~~g~--~~~~~d~~g~T~Lh~---A~~~g---------~~~ 595 (784)
.++.+|++++.. |.||||.|+ .++ .+ |+.+|+ |+|.+|.+|.||||. |+..+ ..+
T Consensus 364 lLIs~GAdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ 443 (672)
T PHA02730 364 CMLDNGATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILID 443 (672)
T ss_pred HHHHCCCCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHH
Confidence 456667776655 899999988 443 34 889998 699999999999994 33232 235
Q ss_pred HHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 596 MVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 596 ~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
++++|+++|||+|.+|..|+||||+|+..++.+++++|+++||+
T Consensus 444 ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAd 487 (672)
T PHA02730 444 VFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS 487 (672)
T ss_pred HHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC
Confidence 79999999999999999999999999999999999999999998
No 95
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.12 E-value=7.5e-11 Score=125.70 Aligned_cols=92 Identities=25% Similarity=0.284 Sum_probs=83.1
Q ss_pred cccccCCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhc
Q 003951 548 NLNFLGPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAE 622 (784)
Q Consensus 548 ~~~~~g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 622 (784)
.+.......+.-|| .++.+ ++..|+++|..+.+|.|+||-||...+.+||++|+++||+||..|..||||||.|+
T Consensus 35 ~v~f~~sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaa 114 (527)
T KOG0505|consen 35 KVRFEDSAVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAA 114 (527)
T ss_pred cccCCchHHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhc
Confidence 34444444555577 77777 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHhcCCC
Q 003951 623 QPVNRSMYDLLLSYENR 639 (784)
Q Consensus 623 ~~g~~~i~~lL~~~~~~ 639 (784)
.+||.+|+.+|+++||.
T Consensus 115 scg~~~i~~~li~~gA~ 131 (527)
T KOG0505|consen 115 SCGYLNIVEYLIQHGAN 131 (527)
T ss_pred ccccHHHHHHHHHhhhh
Confidence 99999999999999998
No 96
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.12 E-value=7e-11 Score=138.39 Aligned_cols=81 Identities=32% Similarity=0.305 Sum_probs=76.8
Q ss_pred chhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHH
Q 003951 556 ATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMY 630 (784)
Q Consensus 556 ~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~ 630 (784)
.++.|+ .|+.+ |+++|+|+|.+|.+|+||||+||..|+.++|++|+++|||+|.+|..|+||||+|+..|+.+++
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv 164 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV 164 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence 466677 77777 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 003951 631 DLLLSY 636 (784)
Q Consensus 631 ~lL~~~ 636 (784)
++|+++
T Consensus 165 ~~Ll~~ 170 (664)
T PTZ00322 165 QLLSRH 170 (664)
T ss_pred HHHHhC
Confidence 999998
No 97
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.12 E-value=2.1e-11 Score=116.28 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=72.9
Q ss_pred ccCCCchhhhh-hcCcc--cccCCC--C-----CCCCCCCCccHHHHHHHcCCH---HHHHHHHhCCCCCCCCC-CCCCC
Q 003951 551 FLGPQATDIEA-SKDQD--STACPV--D-----VNSKVEDGQTELNAANQRGHI---EMVKVLLEGGRNGNKPD-AKGWS 616 (784)
Q Consensus 551 ~~g~~~l~~a~-~~~~~--ll~~g~--~-----~~~~d~~g~T~Lh~A~~~g~~---~~v~~Ll~~ga~~~~~d-~~g~t 616 (784)
..|.||||+|| .|+.. +...++ + ++..|.+|.||||+|+..|+. +++++|+++|++++.+| ..|+|
T Consensus 15 ~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T 94 (154)
T PHA02736 15 IEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNT 94 (154)
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCc
Confidence 34899999999 56543 222222 2 345689999999999999987 46899999999999998 49999
Q ss_pred chhhhccCCChhHHHHHHhc-CCC
Q 003951 617 PKAPAEQPVNRSMYDLLLSY-ENR 639 (784)
Q Consensus 617 pl~~A~~~g~~~i~~lL~~~-~~~ 639 (784)
|||+|+..|+.+++++|++. |++
T Consensus 95 ~Lh~A~~~~~~~i~~~Ll~~~g~d 118 (154)
T PHA02736 95 PLHIAVYTQNYELATWLCNQPGVN 118 (154)
T ss_pred HHHHHHHhCCHHHHHHHHhCCCCC
Confidence 99999999999999999974 766
No 98
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.08 E-value=6.1e-11 Score=142.28 Aligned_cols=118 Identities=20% Similarity=0.085 Sum_probs=90.5
Q ss_pred cCCCCCCCCCCCCCCC-CCCC--------CcccccccccccCCCchhhhhhcCcc--------cccCCCC------CCC-
Q 003951 521 GGPTIGSSLSARHQDY-PYGD--------SSMWETRNLNFLGPQATDIEASKDQD--------STACPVD------VNS- 576 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~-~~~~--------~~~~~~~~~~~~g~~~l~~a~~~~~~--------ll~~g~~------~~~- 576 (784)
+.++|..|..|+|||| .|.. .+...+. .+..|.|+||.|+.+..+ +...+.+ ++.
T Consensus 42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~ 120 (743)
T TIGR00870 42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQ 120 (743)
T ss_pred ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccc
Confidence 4578888999999999 5432 1233333 344599999999975444 2233321 111
Q ss_pred ---CCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCC--------------CCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 577 ---KVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPD--------------AKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 577 ---~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d--------------~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.+..|.||||+||.+|+.++|++|+++|||++.++ ..|.||||.|+..|+.+++++|+++|++
T Consensus 121 ~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad 200 (743)
T TIGR00870 121 YTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD 200 (743)
T ss_pred cccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc
Confidence 23579999999999999999999999999999764 3699999999999999999999999986
No 99
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.06 E-value=1.4e-10 Score=99.38 Aligned_cols=65 Identities=31% Similarity=0.464 Sum_probs=55.3
Q ss_pred cccccccCCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 003951 546 TRNLNFLGPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPD 611 (784)
Q Consensus 546 ~~~~~~~g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d 611 (784)
+.+++. |.+|+|+|| .|+.+ |+++|+++|.+|.+|+||||.|+..|+.+++++|+++|++++.+|
T Consensus 20 ~~~~~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 20 GADINL-GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp TSTTTS-SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred cCCCCC-CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 333444 778999999 77777 999999999999999999999999999999999999999999876
No 100
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.00 E-value=1.1e-10 Score=140.08 Aligned_cols=88 Identities=22% Similarity=0.204 Sum_probs=77.6
Q ss_pred cCCCchhhhh-hcCcc----cccCCCCCCCCC--------------CCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 003951 552 LGPQATDIEA-SKDQD----STACPVDVNSKV--------------EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDA 612 (784)
Q Consensus 552 ~g~~~l~~a~-~~~~~----ll~~g~~~~~~d--------------~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~ 612 (784)
.|.||+|+|| .|+.+ |+++|+|+|.++ ..|.||||.|+..|+.+++++|+++|||+|.+|.
T Consensus 127 ~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~ 206 (743)
T TIGR00870 127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADS 206 (743)
T ss_pred CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhh
Confidence 3899999999 77777 999999999763 3699999999999999999999999999999999
Q ss_pred CCCCchhhhccCC---------ChhHHHHHHhcCCC
Q 003951 613 KGWSPKAPAEQPV---------NRSMYDLLLSYENR 639 (784)
Q Consensus 613 ~g~tpl~~A~~~g---------~~~i~~lL~~~~~~ 639 (784)
.|+||||+|+..+ ...+.++++..++.
T Consensus 207 ~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~ 242 (743)
T TIGR00870 207 LGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK 242 (743)
T ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999987 34567777777766
No 101
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.99 E-value=3.6e-10 Score=110.80 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=56.7
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCC-CCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSK-VEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVN 626 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~ 626 (784)
|.++|..|+ +|+++ +++.|+|+|.. +..+.||||.||..|+.++.++|++.||.+...|.-|+|+-..|+.-||
T Consensus 45 GMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~ 124 (396)
T KOG1710|consen 45 GMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGH 124 (396)
T ss_pred cccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcc
Confidence 566666666 66666 66666666654 4566666666666666666666666666666666666666666666666
Q ss_pred hhHHHHHHhcCCC
Q 003951 627 RSMYDLLLSYENR 639 (784)
Q Consensus 627 ~~i~~lL~~~~~~ 639 (784)
.++|+++-++-..
T Consensus 125 H~CV~iINN~~t~ 137 (396)
T KOG1710|consen 125 HECVAIINNHITI 137 (396)
T ss_pred hHHHHHHhccccH
Confidence 6666666666544
No 102
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=98.97 E-value=4.6e-10 Score=102.08 Aligned_cols=87 Identities=33% Similarity=0.433 Sum_probs=65.1
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.++++.|+ .++.+ +++.|.+.+..|..|.||||.|+..++.+++++|++.|++++..+..|.||+|.|+..++.
T Consensus 7 g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~ 86 (126)
T cd00204 7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNL 86 (126)
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcH
Confidence 566777777 44444 7777777777777777888888777777888888887777777777777888888777777
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|++.+..
T Consensus 87 ~~~~~L~~~~~~ 98 (126)
T cd00204 87 DVVKLLLKHGAD 98 (126)
T ss_pred HHHHHHHHcCCC
Confidence 788877777644
No 103
>PHA02792 ankyrin-like protein; Provisional
Probab=98.94 E-value=7.9e-10 Score=124.28 Aligned_cols=85 Identities=13% Similarity=-0.053 Sum_probs=74.9
Q ss_pred Cchhhhh-hcCcc----cccCCCCCCCCCCCC--ccHHHHHHHcCCH---HHHHHHHhCCCCCCCCCCCCCCchhhhccC
Q 003951 555 QATDIEA-SKDQD----STACPVDVNSKVEDG--QTELNAANQRGHI---EMVKVLLEGGRNGNKPDAKGWSPKAPAEQP 624 (784)
Q Consensus 555 ~~l~~a~-~~~~~----ll~~g~~~~~~d~~g--~T~Lh~A~~~g~~---~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 624 (784)
++++.|| .++.+ |+++|||+|.+|.+| .||||.|+..+.. +++++|+++|||+|.+|..|+||||.|+..
T Consensus 341 n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~ 420 (631)
T PHA02792 341 NKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIES 420 (631)
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHc
Confidence 3466677 67777 999999999999775 6999998776654 468999999999999999999999999999
Q ss_pred CChhHHHHHHhcCCC
Q 003951 625 VNRSMYDLLLSYENR 639 (784)
Q Consensus 625 g~~~i~~lL~~~~~~ 639 (784)
|+.+++++|+++|++
T Consensus 421 ~n~eivelLLs~GAD 435 (631)
T PHA02792 421 HSVSLVEWLIDNGAD 435 (631)
T ss_pred CCHHHHHHHHHCCCC
Confidence 999999999999998
No 104
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.94 E-value=3.2e-10 Score=126.69 Aligned_cols=85 Identities=22% Similarity=0.265 Sum_probs=80.0
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCCchhhhccCC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRN--GNKPDAKGWSPKAPAEQPV 625 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~tpl~~A~~~g 625 (784)
|..||.+|| .|+.+ |+++|||+|++|..|+|.||..+..-..+|-.+++++||+ ...+|..|.|||.+|++.|
T Consensus 240 GEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklG 319 (782)
T KOG3676|consen 240 GEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLG 319 (782)
T ss_pred ccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence 677999877 77777 9999999999999999999999999999999999999999 8999999999999999999
Q ss_pred ChhHHHHHHhcC
Q 003951 626 NRSMYDLLLSYE 637 (784)
Q Consensus 626 ~~~i~~lL~~~~ 637 (784)
.+++.+.+++.+
T Consensus 320 k~emf~~ile~~ 331 (782)
T KOG3676|consen 320 KKEMFQHILERR 331 (782)
T ss_pred hHHHHHHHHHhh
Confidence 999999999986
No 105
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.92 E-value=1.9e-09 Score=109.75 Aligned_cols=117 Identities=21% Similarity=0.343 Sum_probs=106.8
Q ss_pred HhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeee
Q 003951 366 YLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 366 ~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 445 (784)
-++.++|+++|++..+.......++..+..+.|.+|+.|+.||+.++.+|+|.+|+|.+....+| ..+ +++.||+||
T Consensus 236 kMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~--v~v-kl~~~dyfg 312 (368)
T KOG1113|consen 236 KMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG--VEV-KLKKGDYFG 312 (368)
T ss_pred hhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC--eEE-Eechhhhcc
Confidence 36788999999999999999999999999999999999999999999999999999999843344 445 999999999
Q ss_pred hhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHH
Q 003951 446 EIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMED 485 (784)
Q Consensus 446 e~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~ 485 (784)
|.+++.+.||.++|.|.+...+..++++.|+.++....+.
T Consensus 313 e~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~di 352 (368)
T KOG1113|consen 313 ELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQDI 352 (368)
T ss_pred hHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999998776543
No 106
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.91 E-value=5.6e-10 Score=116.31 Aligned_cols=84 Identities=25% Similarity=0.281 Sum_probs=77.0
Q ss_pred chhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCchhhhccCCChhH
Q 003951 556 ATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLE-GGRNGNKPDAKGWSPKAPAEQPVNRSM 629 (784)
Q Consensus 556 ~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~i 629 (784)
.+.+|+ .|++. +.-.|.|++.+|++.+|+||+||.+|+++++++|++ .+.|++.+|.+|+|||+.|...+|.++
T Consensus 509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v 588 (622)
T KOG0506|consen 509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEV 588 (622)
T ss_pred hhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHH
Confidence 455677 78877 667899999999999999999999999999999997 589999999999999999999999999
Q ss_pred HHHHHhcCCC
Q 003951 630 YDLLLSYENR 639 (784)
Q Consensus 630 ~~lL~~~~~~ 639 (784)
+++|.++...
T Consensus 589 ~k~L~~~~~~ 598 (622)
T KOG0506|consen 589 VKLLEEAQYP 598 (622)
T ss_pred HHHHHHHhcc
Confidence 9999998864
No 107
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.91 E-value=1e-09 Score=107.67 Aligned_cols=78 Identities=26% Similarity=0.335 Sum_probs=70.4
Q ss_pred hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCchhhhccCCChhHHHHHHhc
Q 003951 562 SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKP-DAKGWSPKAPAEQPVNRSMYDLLLSY 636 (784)
Q Consensus 562 ~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~g~~~i~~lL~~~ 636 (784)
.|+.+ |+..--++|..|..|+|+|..|+.+|+.++|++|+++|||+|.. +..+.||||.|+..|+.++..+|++.
T Consensus 22 Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlllda 101 (396)
T KOG1710|consen 22 KNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDA 101 (396)
T ss_pred cCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhc
Confidence 45544 66665569999999999999999999999999999999999964 57899999999999999999999999
Q ss_pred CCC
Q 003951 637 ENR 639 (784)
Q Consensus 637 ~~~ 639 (784)
|++
T Consensus 102 Ga~ 104 (396)
T KOG1710|consen 102 GAR 104 (396)
T ss_pred cCc
Confidence 998
No 108
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=98.89 E-value=3.4e-09 Score=96.36 Aligned_cols=108 Identities=24% Similarity=0.285 Sum_probs=90.6
Q ss_pred CCCCCCCCCCCCCC--------Ccccccccccc---cCCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHH
Q 003951 527 SSLSARHQDYPYGD--------SSMWETRNLNF---LGPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQ 590 (784)
Q Consensus 527 ~d~~g~t~l~~~~~--------~~~~~~~~~~~---~g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~ 590 (784)
.|.+|.||+|.+.. .+...+.+.+. .|.++++.|+ .++.+ ++..|++++..+..|.||+|.|+.
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~ 82 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR 82 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 34679999987433 22334433222 3889999999 66666 889999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHH
Q 003951 591 RGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLL 634 (784)
Q Consensus 591 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~ 634 (784)
.++.+++++|+++|.+++..|..|.||++.|...++.+++++|+
T Consensus 83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 99999999999999999999999999999999999999998874
No 109
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=98.88 E-value=1.3e-09 Score=83.43 Aligned_cols=49 Identities=35% Similarity=0.492 Sum_probs=40.1
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHH
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLL 601 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll 601 (784)
|.|++|.|| .|+.+ |++.|+|+|.+|.+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 678999999 77777 88999999999999999999999999999999996
No 110
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=98.86 E-value=4.3e-09 Score=106.67 Aligned_cols=87 Identities=33% Similarity=0.381 Sum_probs=63.8
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCC-----HHHHHHHHhCCC---CCCCCCCCCCCchh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGH-----IEMVKVLLEGGR---NGNKPDAKGWSPKA 619 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~-----~~~v~~Ll~~ga---~~~~~d~~g~tpl~ 619 (784)
+.++++.++ .++.+ ++..|++++.+|.+|.||||+|+..|+ .+++++|++.|+ +.+.+|..|+||||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~ 152 (235)
T COG0666 73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH 152 (235)
T ss_pred ccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhH
Confidence 445566665 33333 777777887778888888888888777 788888888887 55555777888888
Q ss_pred hhccCCChhHHHHHHhcCCC
Q 003951 620 PAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 620 ~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|+..|+.+++++|++.|+.
T Consensus 153 ~A~~~~~~~~~~~ll~~~~~ 172 (235)
T COG0666 153 WAALNGDADIVELLLEAGAD 172 (235)
T ss_pred HHHHcCchHHHHHHHhcCCC
Confidence 88888888888888877776
No 111
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=98.84 E-value=4.8e-09 Score=106.30 Aligned_cols=95 Identities=24% Similarity=0.309 Sum_probs=82.6
Q ss_pred cccccccccc---CCCchhhhh-hcC-----cc----cccCCC---CCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCC
Q 003951 543 MWETRNLNFL---GPQATDIEA-SKD-----QD----STACPV---DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRN 606 (784)
Q Consensus 543 ~~~~~~~~~~---g~~~l~~a~-~~~-----~~----ll~~g~---~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~ 606 (784)
...+.+++.. |.|++|.|+ .++ .+ |++.|+ +.+.+|.+|.||||+|+..|+.+++++|++.|++
T Consensus 93 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~ 172 (235)
T COG0666 93 LASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD 172 (235)
T ss_pred HHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCC
Confidence 4445555444 778888888 555 34 999999 5666699999999999999999999999999999
Q ss_pred CCCCCCCCCCchhhhccCCChhHHHHHHhcC
Q 003951 607 GNKPDAKGWSPKAPAEQPVNRSMYDLLLSYE 637 (784)
Q Consensus 607 ~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~ 637 (784)
++..+..|.||++.|+..|+.+++..+...+
T Consensus 173 ~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 173 PNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 9999999999999999999999999999987
No 112
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=98.84 E-value=1.4e-09 Score=120.03 Aligned_cols=114 Identities=16% Similarity=0.008 Sum_probs=92.8
Q ss_pred CCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHH
Q 003951 523 PTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELN 586 (784)
Q Consensus 523 ~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh 586 (784)
..|.+|.+|-|++|.|.- .+++.+.-+.++ |..|+|+|+ .|+++ ++.++..+|.....|.||||
T Consensus 41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplh 120 (854)
T KOG0507|consen 41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLH 120 (854)
T ss_pred cccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccc
Confidence 346678889999887432 123333333322 888999999 88888 77888888999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhc
Q 003951 587 AANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSY 636 (784)
Q Consensus 587 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~ 636 (784)
.||++||.++|.+|+.+|||+-..|..+.|++++|++.|..+++.+|++.
T Consensus 121 laaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~ 170 (854)
T KOG0507|consen 121 LAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK 170 (854)
T ss_pred hhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999887
No 113
>PF13606 Ank_3: Ankyrin repeat
Probab=98.82 E-value=4.4e-09 Score=69.11 Aligned_cols=30 Identities=47% Similarity=0.667 Sum_probs=28.5
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 003951 580 DGQTELNAANQRGHIEMVKVLLEGGRNGNK 609 (784)
Q Consensus 580 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~ 609 (784)
+|+||||+||..|+.++|++|+++|||+|+
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999984
No 114
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=98.81 E-value=1.6e-09 Score=119.58 Aligned_cols=88 Identities=18% Similarity=0.079 Sum_probs=83.6
Q ss_pred cCCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCC
Q 003951 552 LGPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVN 626 (784)
Q Consensus 552 ~g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~ 626 (784)
.|-|++|.|| +|+.. |+++-+-++..|..|.+|||+|+..|+.++|++|+.+++.+|+.+..|.||||.|++.||
T Consensus 48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh 127 (854)
T KOG0507|consen 48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGH 127 (854)
T ss_pred cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcc
Confidence 4899999999 66666 888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCC
Q 003951 627 RSMYDLLLSYENR 639 (784)
Q Consensus 627 ~~i~~lL~~~~~~ 639 (784)
.+++.+|+++|++
T Consensus 128 ~dvv~~Ll~~~ad 140 (854)
T KOG0507|consen 128 LEVVFYLLKKNAD 140 (854)
T ss_pred hHHHHHHHhcCCC
Confidence 9999999999998
No 115
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.79 E-value=1.8e-07 Score=101.83 Aligned_cols=54 Identities=30% Similarity=0.488 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLV 299 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii 299 (784)
.+.+|+||+++|+||+||||+.|.+..+++|+++++++|+++|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999988876644
No 116
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.77 E-value=9.9e-09 Score=69.57 Aligned_cols=33 Identities=48% Similarity=0.692 Sum_probs=31.3
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 003951 580 DGQTELNAANQRGHIEMVKVLLEGGRNGNKPDA 612 (784)
Q Consensus 580 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~ 612 (784)
+|+||||+|+..|+.+++++|+++||+++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 699999999999999999999999999999874
No 117
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.71 E-value=8.8e-09 Score=115.44 Aligned_cols=87 Identities=26% Similarity=0.322 Sum_probs=77.0
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCC---------CC--------------CCccHHHHHHHcCCHHHHHHHHhCC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSK---------VE--------------DGQTELNAANQRGHIEMVKVLLEGG 604 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~---------d~--------------~g~T~Lh~A~~~g~~~~v~~Ll~~g 604 (784)
|.+|||.|. +.|.+ |++.||||+++ |. -|..||-.||+-++.|++++|+++|
T Consensus 184 GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~g 263 (782)
T KOG3676|consen 184 GQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHG 263 (782)
T ss_pred CcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcC
Confidence 788888888 55555 88999998654 11 2567999999999999999999999
Q ss_pred CCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 605 RNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 605 a~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|||+++|..|+|.||.-+..-..++.++++++|++
T Consensus 264 Ad~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~ 298 (782)
T KOG3676|consen 264 ADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN 298 (782)
T ss_pred CCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999988889999999999998
No 118
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=1.1e-08 Score=108.12 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=71.0
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCchhhh--ccC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPD-AKGWSPKAPA--EQP 624 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpl~~A--~~~ 624 (784)
|-|+||.|. .|+.+ |+..|+|||+.|.+|+||||+||..+++.+++.|++.||-+-+.. .++.||.+-. ...
T Consensus 583 GITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~ee 662 (752)
T KOG0515|consen 583 GITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEE 662 (752)
T ss_pred chhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhh
Confidence 445555554 67776 999999999999999999999999999999999999999887654 6889997643 356
Q ss_pred CChhHHHHHHhcCCC
Q 003951 625 VNRSMYDLLLSYENR 639 (784)
Q Consensus 625 g~~~i~~lL~~~~~~ 639 (784)
|..++..+|-....+
T Consensus 663 GY~~CsqyL~~vqes 677 (752)
T KOG0515|consen 663 GYDQCSQYLYGVQES 677 (752)
T ss_pred hHHHHHHHHHHHHHh
Confidence 888888888765543
No 119
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.65 E-value=2.7e-08 Score=106.16 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=68.2
Q ss_pred hhhhh-hcCcc------cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhH
Q 003951 557 TDIEA-SKDQD------STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSM 629 (784)
Q Consensus 557 l~~a~-~~~~~------ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i 629 (784)
+|.+. .++.+ +.+.+..++..|..|+||||+|+..|+.+.++.|+.+|||+..+|+.||+|||.|+..|+..+
T Consensus 24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~ 103 (560)
T KOG0522|consen 24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQI 103 (560)
T ss_pred cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHH
Confidence 55555 34433 334567899999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHhc
Q 003951 630 YDLLLSY 636 (784)
Q Consensus 630 ~~lL~~~ 636 (784)
+.-++.+
T Consensus 104 i~~vlr~ 110 (560)
T KOG0522|consen 104 ITEVLRH 110 (560)
T ss_pred HHHHHHH
Confidence 7766644
No 120
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.59 E-value=6.8e-08 Score=103.31 Aligned_cols=74 Identities=27% Similarity=0.304 Sum_probs=67.6
Q ss_pred cccCCCC--CCC--CCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCCC
Q 003951 567 STACPVD--VNS--KVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENRT 640 (784)
Q Consensus 567 ll~~g~~--~~~--~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~~ 640 (784)
|+.+|.. +|. .+.+|+||||+||..|++.+.++|+.+|+|+.++|..|+|||.+|.+.|..+++++|+++|-..
T Consensus 643 LLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 643 LLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD 720 (749)
T ss_pred HHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence 8888864 443 3678899999999999999999999999999999999999999999999999999999999773
No 121
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.49 E-value=1.4e-07 Score=110.91 Aligned_cols=70 Identities=23% Similarity=0.284 Sum_probs=62.1
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhC-------CCCCCCCCCCCCCchhh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEG-------GRNGNKPDAKGWSPKAP 620 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-------ga~~~~~d~~g~tpl~~ 620 (784)
|.||||+|| .|+.+ |+++|+|+|.+|.+|.||||+|+..|+.+++++|+++ ||+++..+..|.+|+..
T Consensus 115 G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~ 194 (664)
T PTZ00322 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLE 194 (664)
T ss_pred CCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccch
Confidence 556677778 66666 9999999999999999999999999999999999999 99999999999988765
Q ss_pred hc
Q 003951 621 AE 622 (784)
Q Consensus 621 A~ 622 (784)
+.
T Consensus 195 ~~ 196 (664)
T PTZ00322 195 DS 196 (664)
T ss_pred hh
Confidence 54
No 122
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.47 E-value=1.6e-07 Score=105.54 Aligned_cols=116 Identities=20% Similarity=0.279 Sum_probs=105.0
Q ss_pred HHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEe-ecCceeEEEEecCCCeeehhhhhcCCCceeEEEEc
Q 003951 384 DFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHY-VDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTT 462 (784)
Q Consensus 384 ~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~ 462 (784)
.++.++-..++...+.||+.+++|||..+++|+|.+|.++.... ..|+..+++.++.||.+|+.+.+++++|..|+.|+
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~Av 578 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAV 578 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEE
Confidence 45667777788899999999999999999999999999998844 45555589999999999999999999999999999
Q ss_pred cceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHh
Q 003951 463 ELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKD 499 (784)
Q Consensus 463 ~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 499 (784)
.++++.+||..-|..+..+||.+...+.+.+.++...
T Consensus 579 RdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~~g 615 (1158)
T KOG2968|consen 579 RDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKILG 615 (1158)
T ss_pred eehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999988743
No 123
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.46 E-value=2.8e-07 Score=85.62 Aligned_cols=67 Identities=22% Similarity=0.196 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCchhhhccCCChhHHHHHHhcC
Q 003951 571 PVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGG-RNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYE 637 (784)
Q Consensus 571 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~ 637 (784)
+.|+|++|..|+|||+.|+.+|+.+.|.+|+.+| |+|...|..|.+++.+|.+.|+.+++..|.+.-
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~ 69 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND 69 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence 5789999999999999999999999999999999 999999999999999999999999999999873
No 124
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.35 E-value=1.2e-07 Score=105.35 Aligned_cols=70 Identities=29% Similarity=0.323 Sum_probs=38.3
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCC-CCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhc
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKV-EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAE 622 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 622 (784)
|++++|+|+ .+... |+++|+|++.+| +.|.||||.|...||+||+-+||.+|+....+|++|..||+.-+
T Consensus 52 GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~ 127 (1267)
T KOG0783|consen 52 GRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLS 127 (1267)
T ss_pred ccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHh
Confidence 555555555 22222 555555555555 34555555555555555555555555555555555555555443
No 125
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.30 E-value=2.4e-07 Score=102.91 Aligned_cols=66 Identities=26% Similarity=0.203 Sum_probs=63.8
Q ss_pred CCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 574 VNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDA-KGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 574 ~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|.+|..|+||||+|+..|..+++++|+.+|+|++.+|. .||||||.|...||.|++.+|+++|+.
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S 111 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS 111 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence 588999999999999999999999999999999999995 799999999999999999999999987
No 126
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.25 E-value=6.7e-07 Score=72.15 Aligned_cols=60 Identities=23% Similarity=0.445 Sum_probs=46.5
Q ss_pred cCCCCCCCcchhh---chhhhccCCcEeCCCChhHHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q 003951 28 FLSSDLLPSLGAR---INQATKLRRYIISPFNPRYRAWEMWLVVLVVYSAWICPFEFAFLTYK 87 (784)
Q Consensus 28 ~~~~~~~~~~~~~---~~~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~p~~~~F~~~~ 87 (784)
..+.....|.++- .++..+...|+|||+|+++.+||++++++++++++++|+.++|..+.
T Consensus 12 k~sl~~f~S~~ai~~E~~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~ 74 (77)
T PF08412_consen 12 KFSLRVFGSKKAIEKEKERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDE 74 (77)
T ss_pred HHHHHHHccHHHHHHHHHHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCc
Confidence 3444455555552 22334467799999999999999999999999999999999997654
No 127
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.21 E-value=5.1e-07 Score=69.51 Aligned_cols=40 Identities=30% Similarity=0.277 Sum_probs=24.6
Q ss_pred HHhCC-CCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 600 LLEGG-RNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 600 Ll~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
||++| ++++.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d 41 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD 41 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC
Confidence 68889 99999999999999999999999999999999987
No 128
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.19 E-value=0.00018 Score=76.28 Aligned_cols=91 Identities=13% Similarity=0.242 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 003951 243 LWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRETVRAVSEFATR 322 (784)
Q Consensus 243 ~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~~~~~m~~ 322 (784)
....|+.|+|....|+.++||||+.|.|.-++.++++.-++|.+..|.+++.|+- +-+..+--+.+.+||..
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisR--------KLeLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIAR--------KLELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 4467999999999999999999999999999999999999999999988877654 33444444567788887
Q ss_pred cCCChHHHHHHHHHHHHHH
Q 003951 323 NHLPPHIHDQMLSHICLKF 341 (784)
Q Consensus 323 ~~l~~~l~~~v~~~~~~~~ 341 (784)
.++-.+.++-.-+-++..|
T Consensus 356 tqLTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777776655444333333
No 129
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.17 E-value=1e-06 Score=100.70 Aligned_cols=89 Identities=16% Similarity=0.127 Sum_probs=81.0
Q ss_pred CCchhhhhhcCcc-----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCchhhhccCCCh
Q 003951 554 PQATDIEASKDQD-----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKP-DAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 554 ~~~l~~a~~~~~~-----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~g~~ 627 (784)
.++|..||.|..+ |+..|+++..+|..|.+||.+|+..||..+|+.|+.+-|+++++ |+.+.|||.+||..|.+
T Consensus 758 ~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~ 837 (2131)
T KOG4369|consen 758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRT 837 (2131)
T ss_pred cccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcc
Confidence 5788899966554 88999999999999999999999999999999999999999875 67899999999999999
Q ss_pred hHHHHHHhcCCCCCC
Q 003951 628 SMYDLLLSYENRTPD 642 (784)
Q Consensus 628 ~i~~lL~~~~~~~~~ 642 (784)
+++++|+++|+..+-
T Consensus 838 ~vvelLl~~gankeh 852 (2131)
T KOG4369|consen 838 RVVELLLNAGANKEH 852 (2131)
T ss_pred hHHHHHHHhhccccc
Confidence 999999999998443
No 130
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.15 E-value=1.5e-06 Score=99.39 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=93.8
Q ss_pred cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc----CCCchhhhhh-cCcc----cccCCCCCCCCCCCCcc
Q 003951 521 GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL----GPQATDIEAS-KDQD----STACPVDVNSKVEDGQT 583 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~----g~~~l~~a~~-~~~~----ll~~g~~~~~~d~~g~T 583 (784)
|+..+-.|.+|-+|+-.+.- .+++...++... +.++|.+||. |..+ ||.+|++-..++-...|
T Consensus 780 ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDyt 859 (2131)
T KOG4369|consen 780 GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYT 859 (2131)
T ss_pred cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcC
Confidence 78888888888888765322 234444444433 7788889994 4444 88899988888888889
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 584 ELNAANQRGHIEMVKVLLEGGRNGNKPD--AKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 584 ~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d--~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
||-+|...|+.++++.|+.+|+++|.+. +.|-.||.+|.++||.+.+..|++.|.+
T Consensus 860 Plsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsd 917 (2131)
T KOG4369|consen 860 PLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSD 917 (2131)
T ss_pred chhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccch
Confidence 9999999999999999999998888765 5788899999999999999999888877
No 131
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.07 E-value=1.7e-06 Score=101.00 Aligned_cols=84 Identities=26% Similarity=0.285 Sum_probs=72.1
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.+++|.|| .+... |+..|+|+|..|..|+||||.+...|+...+.+|+++||++++.|.+|.+|++.|....|.
T Consensus 656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~ 735 (785)
T KOG0521|consen 656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANA 735 (785)
T ss_pred ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccc
Confidence 678888888 44443 8899999999999999999999999999999999999999999999999999999777888
Q ss_pred hHHHHHHhc
Q 003951 628 SMYDLLLSY 636 (784)
Q Consensus 628 ~i~~lL~~~ 636 (784)
+++-++...
T Consensus 736 d~~~l~~l~ 744 (785)
T KOG0521|consen 736 DIVLLLRLA 744 (785)
T ss_pred cHHHHHhhh
Confidence 888887666
No 132
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.01 E-value=3.3e-06 Score=90.10 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=47.1
Q ss_pred Cchhhhh-hcCcc----cccCCCC--CCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 555 QATDIEA-SKDQD----STACPVD--VNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 555 ~~l~~a~-~~~~~----ll~~g~~--~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
+.||+|+ .|+-+ ++.+|-. .+..|+.|.|+||-|++.++..+..+|++.||..-+.|..|.||-..|.+.|+.
T Consensus 901 sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~ 980 (1004)
T KOG0782|consen 901 SLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDP 980 (1004)
T ss_pred hHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCc
Confidence 3555555 34444 4444432 345555666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHhcC
Q 003951 628 SMYDLLLSYE 637 (784)
Q Consensus 628 ~i~~lL~~~~ 637 (784)
+++.+|.+.+
T Consensus 981 dlaayle~rq 990 (1004)
T KOG0782|consen 981 DLAAYLESRQ 990 (1004)
T ss_pred hHHHHHhhhh
Confidence 6666655544
No 133
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.95 E-value=2.2e-05 Score=83.44 Aligned_cols=90 Identities=26% Similarity=0.369 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC-----CCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCC--cccCCchhHH
Q 003951 203 AVTLFAVHCAGCFNYLIADRYPD-----PEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGD--LHAENPREML 275 (784)
Q Consensus 203 ~~~l~~~h~~aci~y~i~~~~~~-----~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGD--i~p~~~~e~i 275 (784)
+..++..-++|++||+++....+ ...+|-... .....+..+|+||+.|+||+|||. ++|..+...+
T Consensus 43 ~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv-------~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~ 115 (336)
T PF01007_consen 43 LSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCV-------SNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIF 115 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSE-------CT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCce-------ecccchhhheeEEEEEEEEeccCCcccCCCcchhHH
Confidence 34445566789999998743211 112221110 113468999999999999999999 6788888888
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q 003951 276 FDIFYMLFNLGLTSYIIGNMTNLV 299 (784)
Q Consensus 276 ~~i~~~l~g~~~~a~~ig~i~~ii 299 (784)
+.++=+++|+++.|+++|.+.+=+
T Consensus 116 l~~~q~~~g~l~~a~~~Glvfar~ 139 (336)
T PF01007_consen 116 LVTIQSLVGLLLDAFMTGLVFARF 139 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999998876533
No 134
>PF13606 Ank_3: Ankyrin repeat
Probab=97.88 E-value=7.5e-06 Score=53.75 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=25.8
Q ss_pred CCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 613 KGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 613 ~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|+||||+|+..|+.+++++|+++|++
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad 27 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGAD 27 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence 599999999999999999999999987
No 135
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.87 E-value=0.00057 Score=77.95 Aligned_cols=87 Identities=16% Similarity=0.310 Sum_probs=57.2
Q ss_pred hccCCcEeCCCChhHH---------HHHHHHHHHHHHHHHHHhhhhhcc-cCCC-ccchhHH-HHHHHHHHHhhheeeeE
Q 003951 45 TKLRRYIISPFNPRYR---------AWEMWLVVLVVYSAWICPFEFAFL-TYKK-DALLIID-NIVNGFFAIDIILTFFV 112 (784)
Q Consensus 45 ~~~~~~ii~P~s~~~~---------~W~~~~~~~~~~~~~~~p~~~~F~-~~~~-~~~~~~~-~~~~~~f~iDi~l~f~t 112 (784)
.-+-.+++.|.++++. .++.+++++++++++.+..+..-. .... +.+..++ +++..+|++++.++...
T Consensus 1100 ~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV~Em~lKVVA 1179 (1956)
T KOG2302|consen 1100 ELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKVVA 1179 (1956)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHHHHHHHHHHh
Confidence 3345678999998865 577788888999998888764222 2122 2333444 88899999999887522
Q ss_pred -eEEeCCCeEEeeChHHHHHHHh-hhhhHHHhh
Q 003951 113 -AYLDSQSYLLVDDPKKIAIRYM-STWFIFDVC 143 (784)
Q Consensus 113 -~y~~~~~~~~v~~~~~i~~~Yl-~~~f~~Dli 143 (784)
+.|- | -..|+ ++|..+|.+
T Consensus 1180 LGl~f-g-----------e~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1180 LGLYF-G-----------EQAYLRSSWNVLDGF 1200 (1956)
T ss_pred hhhcc-c-----------hHHHHHHHHHhhhHH
Confidence 2111 1 14677 678788865
No 136
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.85 E-value=9.3e-05 Score=83.12 Aligned_cols=57 Identities=28% Similarity=0.565 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHW 302 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~ 302 (784)
.+..|+||+++++||+|||++.|.|..+++++|++.++|+-++..+++.++..+...
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 477999999999999999999999999999999999999999999999999887654
No 137
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.81 E-value=0.00012 Score=83.28 Aligned_cols=112 Identities=17% Similarity=0.334 Sum_probs=97.5
Q ss_pred HHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehh-hh---hcCCC---ceeEE
Q 003951 388 QLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEI-GV---LYYRP---QPFTV 459 (784)
Q Consensus 388 ~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~-~~---l~~~~---~~~tv 459 (784)
+++.+++...+..|++|++.|++.+.+|.+.+|.++++ ...+|++..+....+|+.|... ++ +.+.| +...+
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~a 189 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAA 189 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeee
Confidence 34478888999999999999999999999999999999 6678999999999999777553 33 44444 45789
Q ss_pred EEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHh
Q 003951 460 RTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKD 499 (784)
Q Consensus 460 ~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 499 (784)
+|.++|.+.+++.+.|.+....||+-...+.+....|+..
T Consensus 190 kA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq~ 229 (1158)
T KOG2968|consen 190 KAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQR 229 (1158)
T ss_pred eeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888775
No 138
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.74 E-value=6.4e-05 Score=87.37 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=72.8
Q ss_pred CCCchhhhhhcCcc-----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCC------CCCCCCCchhhh
Q 003951 553 GPQATDIEASKDQD-----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNK------PDAKGWSPKAPA 621 (784)
Q Consensus 553 g~~~l~~a~~~~~~-----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A 621 (784)
|...+|+++.+..+ ..-.|..++.+|..|+||||+|+..|+..++..|.+.||++.. .+-.|.|+-++|
T Consensus 608 ~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la 687 (975)
T KOG0520|consen 608 GQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLA 687 (975)
T ss_pred CCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhh
Confidence 66778886677777 5678999999999999999999999999999999999887653 345699999999
Q ss_pred ccCCChhHHHHHHhc
Q 003951 622 EQPVNRSMYDLLLSY 636 (784)
Q Consensus 622 ~~~g~~~i~~lL~~~ 636 (784)
..+||..+..+|-+.
T Consensus 688 ~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 688 RANGHKGIAGYLSEK 702 (975)
T ss_pred hcccccchHHHHhhh
Confidence 999999999998765
No 139
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.64 E-value=5.2e-05 Score=77.88 Aligned_cols=79 Identities=27% Similarity=0.267 Sum_probs=51.5
Q ss_pred chhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHH
Q 003951 556 ATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMY 630 (784)
Q Consensus 556 ~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~ 630 (784)
-++.|| .|+++ |++.|.+||+.|.-...||-+|+..||.++||+|+++||-...-.-+|.--+ +++. +..|-
T Consensus 39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaL--nd~IR 115 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH-YGAL--NDRIR 115 (516)
T ss_pred HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh-hhhh--hHHHH
Confidence 466777 67777 7777778887777777788888777888888888887776554444453322 2222 34555
Q ss_pred HHHHhcC
Q 003951 631 DLLLSYE 637 (784)
Q Consensus 631 ~lL~~~~ 637 (784)
+.|+++.
T Consensus 116 ~mllsyd 122 (516)
T KOG0511|consen 116 RMLLSYD 122 (516)
T ss_pred HHHHHHH
Confidence 5565554
No 140
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=97.59 E-value=3.3e-05 Score=52.14 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=26.0
Q ss_pred CCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 613 KGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 613 ~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|+||||+|+..|+.+++++|+++|++
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~ 27 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGAD 27 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCC
Confidence 599999999999999999999999988
No 141
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00021 Score=72.48 Aligned_cols=58 Identities=24% Similarity=0.476 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhccccccCCcccCC--------chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAEN--------PREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWT 303 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~--------~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~~ 303 (784)
.|++|+||+++|+||+|+||..+.- +.-+.++.+++++|+.+++-.++.+.-.+..++
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~ 251 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN 251 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5999999999999999999987732 234577888999999999888877666555443
No 142
>PLN03223 Polycystin cation channel protein; Provisional
Probab=97.57 E-value=0.0079 Score=72.10 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=37.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhhhh--------cccCCCccchhHHHHHHHHHHHhhhee
Q 003951 53 SPFNPRYRAWEMWLVVLVVYSAWICPFEFA--------FLTYKKDALLIIDNIVNGFFAIDIILT 109 (784)
Q Consensus 53 ~P~s~~~~~W~~~~~~~~~~~~~~~p~~~~--------F~~~~~~~~~~~~~~~~~~f~iDi~l~ 109 (784)
.+.+.+..+.+++.+++++|.++--..++. +.......|.++|++..++.+.-|++.
T Consensus 1169 tt~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLY 1233 (1634)
T PLN03223 1169 TYEDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMW 1233 (1634)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888876655542 112233567788887766666655553
No 143
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.50 E-value=0.00013 Score=74.98 Aligned_cols=58 Identities=29% Similarity=0.235 Sum_probs=55.7
Q ss_pred ccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 582 QTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 582 ~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.--|..||..|..+.|+.|++.|.++|..|....+||-+|+.+||.+++++|++.||-
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI 94 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 4568899999999999999999999999999999999999999999999999999996
No 144
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.46 E-value=0.0027 Score=62.05 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=86.2
Q ss_pred HHHHHHHcCcccccccCCeE-EecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEcc
Q 003951 385 FLFQLVSDMDAEYFPPKEDV-ILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTE 463 (784)
Q Consensus 385 ~l~~l~~~~~~~~~~~~e~I-~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~ 463 (784)
.+..|....+...+++|..+ .......+.++++.+|.|.+. ..| +..+....+..+||-...+.+....+..+|.+
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d--~ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~ 90 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REE--NVLIGITQAPYIMGLADGLMKNDIPYKLISEG 90 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecC--CeEEEeccCCeEeecccccCCCCceEEEEEcC
Confidence 34566667778889999997 545555578999999999994 333 36788899999999887676666678999999
Q ss_pred ceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHh
Q 003951 464 LSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKD 499 (784)
Q Consensus 464 ~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 499 (784)
+|+++++++++|.++++++. ..+.+...+.-++..
T Consensus 91 ~c~~~~i~~~~~~~iie~~~-LW~~~~~~l~~~~~~ 125 (207)
T PRK11832 91 NCTGYHLPAKQTITLIEQNQ-LWRDAFYWLAWQNRI 125 (207)
T ss_pred ccEEEEeeHHHHHHHHHHhc-hHHHHHHHHHHHHHH
Confidence 99999999999999999865 445555555555443
No 145
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.42 E-value=9.3e-05 Score=86.81 Aligned_cols=73 Identities=29% Similarity=0.237 Sum_probs=67.2
Q ss_pred cccCCCCCCCCC--CCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 567 STACPVDVNSKV--EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 567 ll~~g~~~~~~d--~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
-..+|+++|-.+ ..|.|+||+|+..|..-++++|++.||++|..|..|+||+|.+...||...+.+|++.||.
T Consensus 640 ~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~ 714 (785)
T KOG0521|consen 640 ALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD 714 (785)
T ss_pred hhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccc
Confidence 446677777654 6889999999999999999999999999999999999999999999999999999999988
No 146
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=97.25 E-value=0.00011 Score=78.85 Aligned_cols=83 Identities=22% Similarity=0.160 Sum_probs=72.6
Q ss_pred hhhhhhcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCCchhhhccCCChhHH
Q 003951 557 TDIEASKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRN--GNKPDAKGWSPKAPAEQPVNRSMY 630 (784)
Q Consensus 557 l~~a~~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~tpl~~A~~~g~~~i~ 630 (784)
+..+..+++. .-.+|.+.-.++.+..|-||+|+..|+-++|+++|++|.. .+..|..|.|+||-|+..++..++
T Consensus 871 l~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc 950 (1004)
T KOG0782|consen 871 LRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVC 950 (1004)
T ss_pred HHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHH
Confidence 3333367744 5578889889999999999999999999999999999965 577789999999999999999999
Q ss_pred HHHHhcCCC
Q 003951 631 DLLLSYENR 639 (784)
Q Consensus 631 ~lL~~~~~~ 639 (784)
.+|++.||.
T Consensus 951 ~~lvdagas 959 (1004)
T KOG0782|consen 951 QLLVDAGAS 959 (1004)
T ss_pred HHHHhcchh
Confidence 999999998
No 147
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.25 E-value=0.01 Score=54.25 Aligned_cols=112 Identities=18% Similarity=0.171 Sum_probs=91.6
Q ss_pred cCCHHHHHHHHHc-CcccccccCCeEEecCCCC-CeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCC---
Q 003951 380 GVSHDFLFQLVSD-MDAEYFPPKEDVILQNEAP-TDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRP--- 454 (784)
Q Consensus 380 ~~s~~~l~~l~~~-~~~~~~~~~e~I~~~g~~~-~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~--- 454 (784)
++|....++|+.+ .+.....+|+.--.+|..+ +.+-++++|.+.|.. +| ..+..+.|.++....++....+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~--~g--~fLH~I~p~qFlDSPEW~s~~~s~~ 89 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC--DG--RFLHYIYPYQFLDSPEWESLRPSED 89 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE--CC--EeeEeecccccccChhhhccccCCC
Confidence 4788888888887 6678899999999998875 779999999999984 33 5688889999998887765533
Q ss_pred --ceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHH
Q 003951 455 --QPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFR 495 (784)
Q Consensus 455 --~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~ 495 (784)
-..|+.|.+.|..+..+|+.+..++...|-....+-..+.+
T Consensus 90 ~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGk 132 (153)
T PF04831_consen 90 DKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGK 132 (153)
T ss_pred CeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 35799999999999999999999999999877655444443
No 148
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.00067 Score=72.75 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHH
Q 003951 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTN 297 (784)
Q Consensus 247 Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ 297 (784)
.+.|+||.++|++||||||-.|.-|...++.++++-+++++..--+-.++.
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~ 268 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQ 268 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHH
Confidence 357899999999999999999999999998888877777776655555443
No 149
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=97.10 E-value=0.00047 Score=73.33 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=44.9
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEG 603 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ 603 (784)
|.||||.|+ .|+.- |.-+|||++++|.+|+||+.+|-..||.++.+.|++.
T Consensus 167 g~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 167 GNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred CCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence 788888888 45543 8899999999999999999999999999999888874
No 150
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.95 E-value=0.0003 Score=82.04 Aligned_cols=92 Identities=15% Similarity=0.072 Sum_probs=72.0
Q ss_pred ccccccCCCchhhhhhcCcc-----cccC-CCCCCCCCCCCccHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCchh
Q 003951 547 RNLNFLGPQATDIEASKDQD-----STAC-PVDVNSKVEDGQTELNAANQRGHIEMVKVLL-EGGRNGNKPDAKGWSPKA 619 (784)
Q Consensus 547 ~~~~~~g~~~l~~a~~~~~~-----ll~~-g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~tpl~ 619 (784)
..++..|.+.+|+++....+ +++- |-..+.-|.+|..-+|.+ ..++.+.+-+|+ -+|..++.+|..||||||
T Consensus 568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfc-a~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~ 646 (975)
T KOG0520|consen 568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFC-AALGYEWAFLPISADGVAIDIRDRNGWTPLH 646 (975)
T ss_pred ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHh-hhcCCceeEEEEeecccccccccCCCCcccc
Confidence 34556688999988844433 4443 555666788888888884 455666665555 589999999999999999
Q ss_pred hhccCCChhHHHHHHhcCCC
Q 003951 620 PAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 620 ~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|+..||+.++..|...|+.
T Consensus 647 wAa~~G~e~l~a~l~~lga~ 666 (975)
T KOG0520|consen 647 WAAFRGREKLVASLIELGAD 666 (975)
T ss_pred hHhhcCHHHHHHHHHHhccc
Confidence 99999999999999999988
No 151
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.001 Score=67.72 Aligned_cols=51 Identities=27% Similarity=0.533 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHH
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMT 296 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~ 296 (784)
++.-||||+.+.+||+|||--+|.|..+++|+|++.++|+-+.-..+..++
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 577899999999999999999999999999999999999987666655544
No 152
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.82 E-value=0.0016 Score=69.73 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=51.1
Q ss_pred CCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhc
Q 003951 575 NSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSY 636 (784)
Q Consensus 575 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~ 636 (784)
...|..-.|+||+|+..|..+||..||+.|+||..+|..|.||..+++ +.|+-..++..
T Consensus 424 e~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~a~ 482 (591)
T KOG2505|consen 424 EANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFIAR 482 (591)
T ss_pred cccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHHHH
Confidence 344566789999999999999999999999999999999999999988 66777766643
No 153
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.78 E-value=0.001 Score=72.11 Aligned_cols=56 Identities=30% Similarity=0.299 Sum_probs=52.0
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGN 608 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~ 608 (784)
|+|+||+|| .++.. |+=+|+|+-..|.+|+|||.+|-..|.-+|+..|+.+|+...
T Consensus 661 grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 661 GRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred CcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence 689999999 78876 889999999999999999999999999999999999998753
No 154
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.76 E-value=0.0023 Score=40.54 Aligned_cols=29 Identities=45% Similarity=0.738 Sum_probs=26.0
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCCC
Q 003951 580 DGQTELNAANQRGHIEMVKVLLEGGRNGN 608 (784)
Q Consensus 580 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~ 608 (784)
+|.||+|+|+..|+.++++.|+++|++++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 47899999999999999999999998775
No 155
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.013 Score=61.51 Aligned_cols=92 Identities=21% Similarity=0.331 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC-----CCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcc--cCCchh
Q 003951 201 LVAVTLFAVHCAGCFNYLIADRYPD-----PEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLH--AENPRE 273 (784)
Q Consensus 201 li~~~l~~~h~~aci~y~i~~~~~~-----~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~--p~~~~e 273 (784)
+...+++.+.++|++||+||....| +..+|..-+ .....+..||-||+-|=||+|||--. ..=+..
T Consensus 69 F~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV-------~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~a 141 (400)
T KOG3827|consen 69 FSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCV-------MNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEA 141 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcce-------eeccchhhhheeeeeeeeeeeccccccCccChHH
Confidence 3334445566789999999954322 123332211 12346789999999999999999754 344566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003951 274 MLFDIFYMLFNLGLTSYIIGNMTNLV 299 (784)
Q Consensus 274 ~i~~i~~~l~g~~~~a~~ig~i~~ii 299 (784)
.+..++-+++|+++-|+++|.+.+-+
T Consensus 142 I~ll~~Q~I~g~ii~afm~G~i~aKi 167 (400)
T KOG3827|consen 142 IFLLVLQSILGVIINAFMVGAIFAKI 167 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66667778899999999998876544
No 156
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=96.61 E-value=0.0015 Score=69.33 Aligned_cols=77 Identities=25% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCCCChhhhhhhhc--cCCCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhhhcCcc-----cccCCCCCCCCCC
Q 003951 507 YPTTDPGIILHECI--GGPTIGSSLSARHQDYPYGDSSMWETRNLNFLGPQATDIEASKDQD-----STACPVDVNSKVE 579 (784)
Q Consensus 507 ~~~~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~-----ll~~g~~~~~~d~ 579 (784)
++..++...++.++ |.|.+..|++.||+||.| |+.|+.+ +-.++.|++.+|.
T Consensus 513 aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvA---------------------AaEG~v~v~kfl~~~~kv~~~~kDR 571 (622)
T KOG0506|consen 513 AAKNGDLSALRRFALQGMDLETKDYDDRTALHVA---------------------AAEGHVEVVKFLLNACKVDPDPKDR 571 (622)
T ss_pred hhhcCCHHHHHHHHHhcccccccccccchhheee---------------------cccCceeHHHHHHHHHcCCCChhhc
Confidence 45566666666665 889999999999999987 6677776 5578999999999
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCC
Q 003951 580 DGQTELNAANQRGHIEMVKVLLEGG 604 (784)
Q Consensus 580 ~g~T~Lh~A~~~g~~~~v~~Ll~~g 604 (784)
-|+|||--|..-+|.+++++|-+.-
T Consensus 572 w~rtPlDdA~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 572 WGRTPLDDAKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred cCCCcchHhHhcCcHHHHHHHHHHh
Confidence 9999999999999999999998753
No 157
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.28 E-value=0.0036 Score=67.87 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=45.9
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEG 603 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ 603 (784)
|+||+|+|+ .|+.. |+.+|||+..+|.+|++|||-|++.|+.+++.-++.+
T Consensus 55 g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 55 GRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred CCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 788899999 78877 9999999999999999999999999999888777764
No 158
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.24 E-value=0.0039 Score=71.49 Aligned_cols=62 Identities=21% Similarity=0.151 Sum_probs=43.1
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCC----------CCCCCCCCchhhhccCCChhHHHHHHhcCCCCCCCcc
Q 003951 584 ELNAANQRGHIEMVKVLLEGGRNGN----------KPDAKGWSPKAPAEQPVNRSMYDLLLSYENRTPDEHK 645 (784)
Q Consensus 584 ~Lh~A~~~g~~~~v~~Ll~~ga~~~----------~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~~~~~~~ 645 (784)
||-.|...|..++|++++.+-.... ..-..+-||+.+||..+|.||+++|+..|+.....|.
T Consensus 91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~ 162 (822)
T KOG3609|consen 91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHD 162 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcc
Confidence 5555666666666666665533221 1224578999999999999999999999998544443
No 159
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=96.00 E-value=0.01 Score=55.93 Aligned_cols=72 Identities=19% Similarity=0.143 Sum_probs=57.6
Q ss_pred ccccccc---CCCchhhhh-hcCcc----cccCC-CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC
Q 003951 546 TRNLNFL---GPQATDIEA-SKDQD----STACP-VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWS 616 (784)
Q Consensus 546 ~~~~~~~---g~~~l~~a~-~~~~~----ll~~g-~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t 616 (784)
+++++.+ |+|+++.|+ .|..+ |+..| ++|...|..|.+++.+|-..|+.+.|+.|.+.-.+-..++..-.+
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~ 81 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRD 81 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCC
Confidence 3445544 788888877 77766 99999 899999999999999999999999999999986666665544443
Q ss_pred c
Q 003951 617 P 617 (784)
Q Consensus 617 p 617 (784)
+
T Consensus 82 e 82 (223)
T KOG2384|consen 82 E 82 (223)
T ss_pred C
Confidence 3
No 160
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.07 E-value=0.2 Score=63.33 Aligned_cols=141 Identities=18% Similarity=0.250 Sum_probs=78.5
Q ss_pred chhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHh-hhhhHHHhhhccchHHHHHHHhcCCchhHHHHHHH
Q 003951 91 LLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYM-STWFIFDVCSTAPLQFLALLLTNNISELTFRLLNM 169 (784)
Q Consensus 91 ~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl-~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~il~l 169 (784)
+.+.+.++-.+|..|+.+.... .++ ..|+ ++|.++|.+-++ +.++... ..+...+.++|.
T Consensus 475 l~~~~~vF~~lF~~Em~~ki~a-----------l~~----~~yF~~~~n~fD~~iv~-l~~~~~~---~~~~~g~svLr~ 535 (1592)
T KOG2301|consen 475 LYLGNVVFTGLFTVEMILKIYA-----------LGP----RNYFRRGWNIFDLIIVL-LSLLELL---LKNVYGLSVLRS 535 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------cCc----HHHHhhhcchheEEEEe-hhhHHhc---ccchHHHHHHHH
Confidence 4566677788889999887622 232 3566 678899988766 5443322 344456778888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCCcccccccCCCCCCchHHHH
Q 003951 170 LRLWRLRRVSSLFARLEKDIRF-NYFWTRCTKLVAVTLFAVHCA-GCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRY 247 (784)
Q Consensus 170 lrllRl~r~~~~~~~l~~~~~~-~~~~~~~~~li~~~l~~~h~~-aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y 247 (784)
+|++|++|+.+.+..+++.... ......+..|.+++++++-++ .+..-+++..++.. ..|- .....+
T Consensus 536 frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~-~~~~----------~~~~~f 604 (1592)
T KOG2301|consen 536 FRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLH-CDIH----------WHFTDF 604 (1592)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCC-CCCc----------cchhhC
Confidence 8888888888777666554321 112233444444433333333 33444444444332 2221 123445
Q ss_pred HHHHHHHhhhccccc
Q 003951 248 VTAMYWSITTLTTTG 262 (784)
Q Consensus 248 ~~slyw~i~tltTvG 262 (784)
..|+-+... +|+-+
T Consensus 605 p~sfl~vFq-lt~e~ 618 (1592)
T KOG2301|consen 605 PHSFLSVFQ-ITCEE 618 (1592)
T ss_pred HHHHHHHHH-HcCCc
Confidence 666666666 44433
No 161
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=94.99 E-value=0.0085 Score=67.18 Aligned_cols=47 Identities=26% Similarity=0.525 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhH--------HHHHHHHHHHHHHHHHHH
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREM--------LFDIFYMLFNLGLTSYII 292 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~--------i~~i~~~l~g~~~~a~~i 292 (784)
.|+.|+||+++++||+||||+.|.+...+ .+..++.++|...++...
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 47899999999999999999999998866 577777888887776665
No 162
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.17 E-value=0.1 Score=58.01 Aligned_cols=111 Identities=13% Similarity=0.168 Sum_probs=84.3
Q ss_pred hhhhhhccccccccCCHHHHHHHHHcCccc-ccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeee
Q 003951 367 LFFPIVQNVYLFQGVSHDFLFQLVSDMDAE-YFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 367 ~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~-~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 445 (784)
...+++.+.|-|.+++-+..++||..|-.. .=..|.+|...|+.-+.+|.|++|.|++.. .+|+. ..+.-|+.||
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~-PdGk~---e~l~mGnSFG 353 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK-PDGKR---EELKMGNSFG 353 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec-CCCce---EEeecccccC
Confidence 345678889999999999999999988644 456789999999999999999999999985 46653 3467899999
Q ss_pred hhhhhcCCCceeEEE-EccceEEEEecHHHHHHHHHh
Q 003951 446 EIGVLYYRPQPFTVR-TTELSQILRLSRTSLMNSIQA 481 (784)
Q Consensus 446 e~~~l~~~~~~~tv~-a~~~~~l~~l~~~~f~~ll~~ 481 (784)
...-...+-..-.+| -+.+|++..|..++|-.++..
T Consensus 354 ~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 354 AEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred CCCCcchhhhhhhhheecccceEEEeehhhHHHHHHH
Confidence 754332222222233 356899999999999877754
No 163
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=93.92 E-value=0.23 Score=41.96 Aligned_cols=70 Identities=20% Similarity=0.177 Sum_probs=53.7
Q ss_pred CcceEEEeCCCCCCccccccCcEEEEccc----cHHHHHHHHhh--hcCCC-cceeeeeCCCceeeeeeeeecCCEEEEE
Q 003951 700 NKKRITIHMPYQNTRTSQRHLGKLIVLPD----SIEELLRIAGE--KFGGY-KFTKVVNAENAEIDDICVIRDGDHLFLL 772 (784)
Q Consensus 700 ~~~Rvti~~~~~~~~~~~~~~gk~~~~p~----s~~ell~~a~~--~~~~~-~~~~~~~~~ga~id~i~~ird~~~l~~~ 772 (784)
.++||++|.+..... .|.-+.++. |++.||+...+ +.... ...++++.+|.+|.+++-+.||++.+.+
T Consensus 4 k~k~i~~~rNGD~~~-----~g~~~~v~~~~~~s~d~lL~~lt~~v~l~~~~~Vr~lyt~~G~~v~~l~~l~~g~~yVa~ 78 (89)
T smart00537 4 KPKRIRFYRNGDRFF-----KGVRLVVNRKRFKSFEALLQDLTEVVKLDLPHGVRKLYTLDGKKVTSLDELEDGGSYVAS 78 (89)
T ss_pred cceEEEEEeCCCCCC-----CCEEEEEChhhcCCHHHHHHHHhhhcccCCCCCeeEEEcCCCCEECCHHHhCcCCEEEEE
Confidence 468999999977543 566666664 89999999999 44321 4678999999999999999999755544
Q ss_pred ec
Q 003951 773 QN 774 (784)
Q Consensus 773 ~~ 774 (784)
+.
T Consensus 79 g~ 80 (89)
T smart00537 79 GT 80 (89)
T ss_pred cC
Confidence 33
No 164
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.90 E-value=0.045 Score=63.13 Aligned_cols=90 Identities=17% Similarity=-0.033 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccc----cccccccCCCchhhhh-hcCcc----cccCC---------CCCCCC-CCCCc
Q 003951 522 GPTIGSSLSARHQDYPYGDSSMWE----TRNLNFLGPQATDIEA-SKDQD----STACP---------VDVNSK-VEDGQ 582 (784)
Q Consensus 522 ~~~~~~d~~g~t~l~~~~~~~~~~----~~~~~~~g~~~l~~a~-~~~~~----ll~~g---------~~~~~~-d~~g~ 582 (784)
...|..|.-|+++++.|.++...+ -.+.+..-++++.+|. .+... ++.+- .|.+.. -..+.
T Consensus 53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~di 132 (822)
T KOG3609|consen 53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDI 132 (822)
T ss_pred cchhccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCc
Confidence 356778888999999987643111 1111211245555566 44433 22221 122322 35678
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 003951 583 TELNAANQRGHIEMVKVLLEGGRNGNKPD 611 (784)
Q Consensus 583 T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d 611 (784)
|||++||+.+|.||+++|+++||.+..+-
T Consensus 133 tPliLAAh~NnyEil~~Ll~kg~~i~~PH 161 (822)
T KOG3609|consen 133 TPLMLAAHLNNFEILQCLLTRGHCIPIPH 161 (822)
T ss_pred cHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence 99999999999999999999999987653
No 165
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.81 E-value=4.1 Score=49.99 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccchhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhh
Q 003951 56 NPRYRAWEMWLVVLVVYSAWICPFEFAFLTYKKDALLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMS 135 (784)
Q Consensus 56 s~~~~~W~~~~~~~~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~ 135 (784)
.|.-.+|-.++..+.++.++.+.+..-|.+.....-+++ ++-.+-+++|.+=..+.+ ..+ .=+++++..+-.
T Consensus 790 APIvkFw~~~l~yi~FL~lftYvlLv~~~~~Ps~~Ew~~-~~~iftl~~E~vRq~~~s---e~~----~l~~kv~v~f~d 861 (1381)
T KOG3614|consen 790 APIVKFWLNVLSYIAFLLLFTYVLLVDFQPSPSMWEWIL-FAWIFTLFLEEVRQIFIS---ESG----LLPQKVRVYFAD 861 (1381)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHheeccCCCCCccchhH-HHHHHHHHHHHHHHHhcC---CCc----chhhHHHHHHHH
Confidence 455667777777777777776666665655443221111 122233445555554333 221 124566666668
Q ss_pred hhhHHHhhhccch
Q 003951 136 TWFIFDVCSTAPL 148 (784)
Q Consensus 136 ~~f~~Dlis~lP~ 148 (784)
.|+.+|+++++-|
T Consensus 862 ~wN~~d~~ai~~F 874 (1381)
T KOG3614|consen 862 FWNLIDLLAILLF 874 (1381)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999988765
No 166
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=93.72 E-value=0.051 Score=33.95 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=24.8
Q ss_pred CCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 613 KGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 613 ~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.|+||+|+|+..|+.++++.|++.+.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~ 27 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGAD 27 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 489999999999999999999998865
No 167
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.23 E-value=2.7 Score=49.52 Aligned_cols=73 Identities=16% Similarity=0.311 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-----cccCCCccchhHHHHHHHHHHHhhheeeeE-eEEeCCCeEEeeChHHHHHHHh
Q 003951 61 AWEMWLVVLVVYSAWICPFEFA-----FLTYKKDALLIIDNIVNGFFAIDIILTFFV-AYLDSQSYLLVDDPKKIAIRYM 134 (784)
Q Consensus 61 ~W~~~~~~~~~~~~~~~p~~~~-----F~~~~~~~~~~~~~~~~~~f~iDi~l~f~t-~y~~~~~~~~v~~~~~i~~~Yl 134 (784)
+++.+.+++++++++..-..-. -..+....+..+|-++.+||.+++++++.. +.+.+ +-|+
T Consensus 80 wfe~vsmlvillncvtlgmfrpced~~c~s~rc~ilqafddfifaffavemv~kmvalgifgk-------------kcyl 146 (1956)
T KOG2302|consen 80 WFECVSMLVILLNCVTLGMFRPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIFGK-------------KCYL 146 (1956)
T ss_pred HHHHHHHHHHHHhhhhhcccccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------cccc
Confidence 5677788888888876654211 111122456788888999999999998732 33222 4677
Q ss_pred -hhhhHHHhhhcc
Q 003951 135 -STWFIFDVCSTA 146 (784)
Q Consensus 135 -~~~f~~Dlis~l 146 (784)
-+|.-+|++-++
T Consensus 147 gdtwnrldffiv~ 159 (1956)
T KOG2302|consen 147 GDTWNRLDFFIVM 159 (1956)
T ss_pred cCchhhhhhhhee
Confidence 677777776433
No 168
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.86 E-value=0.79 Score=58.29 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCC---ccchhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhh-h
Q 003951 61 AWEMWLVVLVVYSAWICPFEFAFLTYKK---DALLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMS-T 136 (784)
Q Consensus 61 ~W~~~~~~~~~~~~~~~p~~~~F~~~~~---~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~-~ 136 (784)
+.+.+++.+++.+....+++-......+ ..+...|+++..+|.++++++... ..-. -|++ .
T Consensus 841 ~f~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~ia------------~Gf~---~y~rn~ 905 (1592)
T KOG2301|consen 841 WFEAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKWIA------------YGFF---FYFRNA 905 (1592)
T ss_pred HHHHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHHHH------------hHHH---HHHhhH
Confidence 4455555555666555555433332222 456789999999999999998721 2111 1884 5
Q ss_pred hhHHHhhhccchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 003951 137 WFIFDVCSTAPLQFLALLLTNNISELTFRLLNMLRLWRLRRVSSLFARL 185 (784)
Q Consensus 137 ~f~~Dlis~lP~~~i~~~~~~~~~~~~~~il~llrllRl~r~~~~~~~l 185 (784)
|.++|++-.+-. ++.+..... .....+.+|.+|.+|-+|..+.+..+
T Consensus 906 w~~lDf~Vv~vs-lisl~~~~~-~~~~ik~lr~lRaLRPLR~i~r~~~m 952 (1592)
T KOG2301|consen 906 WNWLDFVVVIVS-LISLIASLK-ILSLIKSLRILRALRPLRALSRFPGM 952 (1592)
T ss_pred HhhhhHHHhhhH-HHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHcccc
Confidence 789998754433 222222222 22345666666777766666665553
No 169
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=91.46 E-value=0.3 Score=37.91 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=37.2
Q ss_pred cHHHHHHHHhhhcCCC-cceeeeeCCCceeeeeeeeecCCEEEEEec
Q 003951 729 SIEELLRIAGEKFGGY-KFTKVVNAENAEIDDICVIRDGDHLFLLQN 774 (784)
Q Consensus 729 s~~ell~~a~~~~~~~-~~~~~~~~~ga~id~i~~ird~~~l~~~~~ 774 (784)
|++.||...+++.+.. ...++++.+|.+|.+++-++||+. |++++
T Consensus 10 s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~-yVa~g 55 (60)
T PF03607_consen 10 SFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGS-YVASG 55 (60)
T ss_dssp SHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEE-EEEES
T ss_pred CHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCE-EEEEc
Confidence 8999999999999853 367899999999999999999977 55553
No 170
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.14 E-value=50 Score=39.82 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=13.9
Q ss_pred ccchhHHHHHHHHHHHhhheee
Q 003951 89 DALLIIDNIVNGFFAIDIILTF 110 (784)
Q Consensus 89 ~~~~~~~~~~~~~f~iDi~l~f 110 (784)
..+.++|.++..+.++-+++..
T Consensus 498 s~wN~ld~~i~~ls~~~~~~~~ 519 (798)
T KOG3599|consen 498 SKWNWLDLAIVLLSVVLLVLMI 519 (798)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777666666665544
No 171
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=88.70 E-value=0.59 Score=52.30 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=72.6
Q ss_pred hhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhh
Q 003951 371 IVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVL 450 (784)
Q Consensus 371 ~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l 450 (784)
.+.+...|.++-..-++.++...+.+.++...++++.|+.+.++|++++|.|-+. | ..+-|-.+||..
T Consensus 38 ~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~----g-----qi~mp~~~fgkr--- 105 (1283)
T KOG3542|consen 38 QLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE----G-----QIYMPYGCFGKR--- 105 (1283)
T ss_pred HHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee----c-----ceecCccccccc---
Confidence 5566778888888889999999999999999999999999999999999999663 2 124466667753
Q ss_pred cCCCceeEEEEccceEEEEec
Q 003951 451 YYRPQPFTVRTTELSQILRLS 471 (784)
Q Consensus 451 ~~~~~~~tv~a~~~~~l~~l~ 471 (784)
.|..|...+-..+.++..+++
T Consensus 106 ~g~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 106 TGQNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred cccccccceeeecccceeeee
Confidence 466788888888889888885
No 172
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=88.63 E-value=0.81 Score=42.66 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=45.0
Q ss_pred chHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003951 242 TLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHW 302 (784)
Q Consensus 242 ~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~ 302 (784)
........++|+.+.+++.-| ++..|.+...|++.+++.++++++.++..+++++.+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~q~-~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQQG-SSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cCcccHHHHHHHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445677889999888887644 679999999999999999999999999999999987653
No 173
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=88.61 E-value=23 Score=39.64 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcc--cCCCccchhHHHHHHHHHHHhhheee
Q 003951 58 RYRAWEMWLVVLVVYSAWICPFEFAFL--TYKKDALLIIDNIVNGFFAIDIILTF 110 (784)
Q Consensus 58 ~~~~W~~~~~~~~~~~~~~~p~~~~F~--~~~~~~~~~~~~~~~~~f~iDi~l~f 110 (784)
...+.+++.+++++|.++--..++.-. ......|.++|.++.++.+.=+++.+
T Consensus 209 ~~~~~~i~f~~~~l~~~~~ei~~i~~~g~~y~~~~WN~~e~~ii~ls~~~i~~~~ 263 (425)
T PF08016_consen 209 FVLLCEILFVLFVLYFLYREIKKIRREGRAYFKSFWNWLELLIILLSLAVIVLYF 263 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhcCcHHHHHHHHHHHHHHHHHH
Confidence 334445555555554444333332111 11124566677665554444444433
No 174
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=88.45 E-value=0.89 Score=36.97 Aligned_cols=55 Identities=36% Similarity=0.395 Sum_probs=38.2
Q ss_pred EEEEccccHHHHHHHHhhhcCCC--cceeeeeCCCceeeeeeeee---cCCEEEEEecCCc
Q 003951 722 KLIVLPDSIEELLRIAGEKFGGY--KFTKVVNAENAEIDDICVIR---DGDHLFLLQNEGE 777 (784)
Q Consensus 722 k~~~~p~s~~ell~~a~~~~~~~--~~~~~~~~~ga~id~i~~ir---d~~~l~~~~~~~~ 777 (784)
|.-....|++||+.-|.++|+.. ..+-++.+||-+|||-+.-+ |+-.|.++ ..++
T Consensus 15 k~GV~A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tLp~nT~l~~l-~~gq 74 (78)
T cd01615 15 KKGVAASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTLPDNTVLMLL-EPGQ 74 (78)
T ss_pred eEEEEcCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcCCCCcEEEEE-CCCC
Confidence 34456789999999999999972 33457779999998776533 44444443 4444
No 175
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=87.45 E-value=1.1 Score=35.88 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=32.5
Q ss_pred EEEccccHHHHHHHHhhhcCCC-ccee-eeeCCCceeeeeeeee
Q 003951 723 LIVLPDSIEELLRIAGEKFGGY-KFTK-VVNAENAEIDDICVIR 764 (784)
Q Consensus 723 ~~~~p~s~~ell~~a~~~~~~~-~~~~-~~~~~ga~id~i~~ir 764 (784)
.-....|++||+.-|.++|+.. .+.+ ++.+||-+|||-+.-+
T Consensus 14 ~GV~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~ 57 (74)
T smart00266 14 KGVAASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQ 57 (74)
T ss_pred EEEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHh
Confidence 3356789999999999999974 2444 5778999998876543
No 176
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=87.45 E-value=2.4 Score=35.06 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=51.1
Q ss_pred ceEEEeCCCCCCccccccCcEEEEccc----cHHHHHHHHhhhcCC--CcceeeeeCCC-ceeeeeeeeecCCEEEEE
Q 003951 702 KRITIHMPYQNTRTSQRHLGKLIVLPD----SIEELLRIAGEKFGG--YKFTKVVNAEN-AEIDDICVIRDGDHLFLL 772 (784)
Q Consensus 702 ~Rvti~~~~~~~~~~~~~~gk~~~~p~----s~~ell~~a~~~~~~--~~~~~~~~~~g-a~id~i~~ird~~~l~~~ 772 (784)
+||++|.+..... .|..+.++. |++.||....++.+. ....++++-+| ..|.+++.+.||++...+
T Consensus 1 k~I~~~rNGD~~~-----~g~~~~i~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~ 73 (80)
T cd01617 1 KRVVVYRNGDPFF-----KGVRLLVNRRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVAS 73 (80)
T ss_pred CEEEEEECCCCCC-----CCEEEEEChhhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEE
Confidence 5888888876543 566666554 899999999999884 35578999999 888999999998754443
No 177
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=87.44 E-value=3.1 Score=40.46 Aligned_cols=59 Identities=32% Similarity=0.338 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003951 164 FRLLNMLRLWRLRRVSSLFARL-EKDIRFNYFWTRCTKLVAVTLFAVHCAGCFNYLIADR 222 (784)
Q Consensus 164 ~~il~llrllRl~r~~~~~~~l-~~~~~~~~~~~~~~~li~~~l~~~h~~aci~y~i~~~ 222 (784)
.+++|++|++|+.|..+.++++ ....+......++..++..+++..++.++..+.-...
T Consensus 65 ~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~ 124 (200)
T PF00520_consen 65 FRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDN 124 (200)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred EEeeccccccccccccccccccccccccccccccccccccccccccccchhheecccccc
Confidence 3445555555555443322221 1111222234566777777777788888887776543
No 178
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=87.18 E-value=1.6 Score=35.62 Aligned_cols=54 Identities=33% Similarity=0.405 Sum_probs=36.9
Q ss_pred EEEccccHHHHHHHHhhhcCCC-ccee-eeeCCCceeeeeeeee---cCCEEEEEecCCc
Q 003951 723 LIVLPDSIEELLRIAGEKFGGY-KFTK-VVNAENAEIDDICVIR---DGDHLFLLQNEGE 777 (784)
Q Consensus 723 ~~~~p~s~~ell~~a~~~~~~~-~~~~-~~~~~ga~id~i~~ir---d~~~l~~~~~~~~ 777 (784)
.-.+..|++||+.-|.++|++. .+.+ ++.+||-+|||-+.-+ |+-.|.++ ..++
T Consensus 16 ~Gv~A~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~lm~L-~~ge 74 (78)
T PF02017_consen 16 KGVAASSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTLPDNTVLMLL-EKGE 74 (78)
T ss_dssp EEEEESSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCSSSSEEEEEE-ESSS
T ss_pred EeEEcCCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhCCCCCEEEEE-CCCC
Confidence 3345689999999999999975 3444 5668999999775543 44444444 4444
No 179
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=87.03 E-value=1.6 Score=35.49 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=39.5
Q ss_pred EEEccccHHHHHHHHhhhcCCC-cceeeeeCCCceeeeeeeee--cCCEEEEEecCCcc
Q 003951 723 LIVLPDSIEELLRIAGEKFGGY-KFTKVVNAENAEIDDICVIR--DGDHLFLLQNEGET 778 (784)
Q Consensus 723 ~~~~p~s~~ell~~a~~~~~~~-~~~~~~~~~ga~id~i~~ir--d~~~l~~~~~~~~~ 778 (784)
.-.+..|++||+.-|.++|+.. ..+-++.+||-+|||-+.-+ .++-+|++-+.+++
T Consensus 16 ~GV~A~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tLp~nt~l~vL~~gq~ 74 (79)
T cd06538 16 KGIMADSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQALADNTVFMVLGKGQK 74 (79)
T ss_pred EeEEcCCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhCCCCcEEEEECCCCc
Confidence 3356789999999999999974 33457889999998876543 23344444455554
No 180
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=85.06 E-value=2.1 Score=34.74 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=38.3
Q ss_pred EEEccccHHHHHHHHhhhcCCC--cceeeeeCCCceeeeeeee---ecCCEEEEE
Q 003951 723 LIVLPDSIEELLRIAGEKFGGY--KFTKVVNAENAEIDDICVI---RDGDHLFLL 772 (784)
Q Consensus 723 ~~~~p~s~~ell~~a~~~~~~~--~~~~~~~~~ga~id~i~~i---rd~~~l~~~ 772 (784)
.-.+..|++||+.-|.++|+.. ..+-++.+||-+|||-+.- -|+-+|.++
T Consensus 16 ~GV~A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~LpdnT~lm~L 70 (78)
T cd06539 16 RGVMASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMVL 70 (78)
T ss_pred EEEEecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhCCCCCEEEEE
Confidence 3346789999999999999963 3566899999999887653 466666555
No 181
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=83.75 E-value=2.7 Score=34.25 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=39.6
Q ss_pred EEEEccccHHHHHHHHhhhcCCC-cceeeeeCCCceeeeeee---eecCCEEEEEe
Q 003951 722 KLIVLPDSIEELLRIAGEKFGGY-KFTKVVNAENAEIDDICV---IRDGDHLFLLQ 773 (784)
Q Consensus 722 k~~~~p~s~~ell~~a~~~~~~~-~~~~~~~~~ga~id~i~~---ird~~~l~~~~ 773 (784)
|.-.+..|++||+.-|.++|+.. ..+-++.+||-+|||-+. .-|+-+|.++.
T Consensus 15 kkGV~A~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tLpdnT~lm~L~ 70 (81)
T cd06537 15 RKGLTAASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELLEDDTCLMVLE 70 (81)
T ss_pred eEeEEccCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhCCCCCEEEEEC
Confidence 33456789999999999999975 345589999999988765 44666666663
No 182
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=83.53 E-value=2.2 Score=34.89 Aligned_cols=50 Identities=24% Similarity=0.167 Sum_probs=35.8
Q ss_pred EEEccccHHHHHHHHhhhcCCC---ccee-eeeCCCceeeeeeeee---cCCEEEEE
Q 003951 723 LIVLPDSIEELLRIAGEKFGGY---KFTK-VVNAENAEIDDICVIR---DGDHLFLL 772 (784)
Q Consensus 723 ~~~~p~s~~ell~~a~~~~~~~---~~~~-~~~~~ga~id~i~~ir---d~~~l~~~ 772 (784)
--....|++||+.-|.++|+.. .+.+ ++.+||-+|||-+.-+ |+-+|.++
T Consensus 16 ~GV~A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~l~~L 72 (80)
T cd06536 16 HGVAASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCLPPNTKFVLL 72 (80)
T ss_pred EeEEcCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhCCCCcEEEEE
Confidence 3346789999999999999964 1244 5789999998876543 44444444
No 183
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=76.48 E-value=3.2 Score=40.77 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=36.1
Q ss_pred CHHHHHHHHhCC-CCCCCC---CCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 593 HIEMVKVLLEGG-RNGNKP---DAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 593 ~~~~v~~Ll~~g-a~~~~~---d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+..+.+..+.+| ++||.+ -+.|.|-|+-|.+.++.+++++|+++||-
T Consensus 229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 466777777777 677754 45788888888888888888888888874
No 184
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=74.44 E-value=5.6 Score=32.24 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=36.3
Q ss_pred EEEccccHHHHHHHHhhhcCCCc-cee-eeeCCCceeeeeeeee--cCCEEEEEecCCcc
Q 003951 723 LIVLPDSIEELLRIAGEKFGGYK-FTK-VVNAENAEIDDICVIR--DGDHLFLLQNEGET 778 (784)
Q Consensus 723 ~~~~p~s~~ell~~a~~~~~~~~-~~~-~~~~~ga~id~i~~ir--d~~~l~~~~~~~~~ 778 (784)
--....|++||+.-|.++|+... +++ ++.+||-+|+| +.-+ .++-++++-..+++
T Consensus 16 ~GV~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeVtE-eyF~tLp~nT~lmvL~~gq~ 74 (77)
T cd06535 16 YGVAAKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEVTE-EYFPTLPDNTELVLLTPGQS 74 (77)
T ss_pred EeEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEehH-HHHhcCCCCcEEEEEcCCCc
Confidence 33467899999999999999642 444 59999999964 3322 23334444444443
No 185
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.34 E-value=1.9e+02 Score=34.45 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 597 VKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 597 v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
...++..+..++..+.+|.+|+|.++..|..++...+....++
T Consensus 592 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (727)
T KOG0498|consen 592 SKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPAD 634 (727)
T ss_pred chhhhhcccccccccccCCCccccccccCccccccccCCCCCC
Confidence 3446677889999999999999999999888888777777765
No 186
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=71.37 E-value=17 Score=35.31 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh---hcCCcHHHHHhcC--CHHHHHHHHHHhh
Q 003951 311 ETVRAVSEFATRNHLPPHIHDQMLSHICLKFK---TEGLKQQETLVGL--PKAIRSSIAHYLF 368 (784)
Q Consensus 311 ~~~~~~~~~m~~~~l~~~l~~~v~~~~~~~~~---~~~~~~~~~l~~L--p~~Lr~~i~~~~~ 368 (784)
+-+++++++++ ++|++-++++.+||+-.++ .+|.+|+++.++| |+.+-+++..+..
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 44667778886 5999999999999988875 3578899999987 7777777765543
No 187
>COG4709 Predicted membrane protein [Function unknown]
Probab=70.79 E-value=18 Score=34.61 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhh---cCCcHHHHHhcC--CHHHHHHHHHHhhhhhhccccccccCCHHH
Q 003951 311 ETVRAVSEFATRNHLPPHIHDQMLSHICLKFKT---EGLKQQETLVGL--PKAIRSSIAHYLFFPIVQNVYLFQGVSHDF 385 (784)
Q Consensus 311 ~~~~~~~~~m~~~~l~~~l~~~v~~~~~~~~~~---~~~~~~~~l~~L--p~~Lr~~i~~~~~~~~l~~~~lf~~~s~~~ 385 (784)
+-++++++|++ .+|++.++++..+|+-.++. +|.+|.|+..+| |+++-.|+..+.-.+-.+.-+-+++.+...
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ai 82 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAI 82 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHH
Confidence 34566777774 68999999999999888753 578899999876 667777777666666666556666666544
Q ss_pred HHH
Q 003951 386 LFQ 388 (784)
Q Consensus 386 l~~ 388 (784)
+..
T Consensus 83 i~~ 85 (195)
T COG4709 83 IAL 85 (195)
T ss_pred HHH
Confidence 433
No 188
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=68.83 E-value=17 Score=28.53 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=40.9
Q ss_pred cccccCCeEEecCCCCC-eEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEE
Q 003951 396 EYFPPKEDVILQNEAPT-DLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILR 469 (784)
Q Consensus 396 ~~~~~~e~I~~~g~~~~-~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~ 469 (784)
..++||+..-..-.... .+++|++|++.+.. +|+ ...+++||.+=.- .+.++.+.....+.+.++.
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~i~---~~~~H~~~n~~~~~~~~l~ 69 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV--DGE---RVELKPGDAIYIP---PGVPHQVRNPGDEPARFLV 69 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE--TTE---EEEEETTEEEEEE---TTSEEEEEEESSSEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE--ccE---EeEccCCEEEEEC---CCCeEEEEECCCCCEEEEE
Confidence 35778887666555555 89999999999873 443 4567899865321 1334444444444555544
No 189
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=65.18 E-value=14 Score=41.64 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHH
Q 003951 204 VTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLF 283 (784)
Q Consensus 204 ~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~ 283 (784)
.+++.+|..|...|++....|...- .+. ..-.++...-..-.|+||+-..+..-|-|.-+|.+...++..|++.=|
T Consensus 575 lv~~SVhvVal~lYlLDrfSPFgRF-k~~---ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGF 650 (993)
T KOG4440|consen 575 LVGLSVHVVALMLYLLDRFSPFGRF-KVN---DSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGF 650 (993)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccce-eec---cCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhh
Confidence 3455789999999988753332210 000 011222334456789999999999999999999999999999999888
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 003951 284 NLGLTSYIIGNMTNLVVH 301 (784)
Q Consensus 284 g~~~~a~~ig~i~~ii~~ 301 (784)
++++.|...+|+++.++.
T Consensus 651 aMIiVASYTANLAAFLVL 668 (993)
T KOG4440|consen 651 AMIIVASYTANLAAFLVL 668 (993)
T ss_pred heeeehhhhhhhhhheee
Confidence 888888888888887654
No 190
>PLN03223 Polycystin cation channel protein; Provisional
Probab=54.63 E-value=3.7e+02 Score=34.30 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=11.3
Q ss_pred HHHhh-hhhHHHhhhc
Q 003951 131 IRYMS-TWFIFDVCST 145 (784)
Q Consensus 131 ~~Yl~-~~f~~Dlis~ 145 (784)
+.|++ .|-++|++.+
T Consensus 1208 laYFKSfWNwLEIl~I 1223 (1634)
T PLN03223 1208 LAYFLSGWNYVDFASI 1223 (1634)
T ss_pred hhHhccchHHHHHHHH
Confidence 57885 6889998653
No 191
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=51.94 E-value=14 Score=36.51 Aligned_cols=41 Identities=37% Similarity=0.387 Sum_probs=33.8
Q ss_pred cccCC-CCCCCC---CCCCccHHHHHHHcCCHHHHHHHHhCCCCC
Q 003951 567 STACP-VDVNSK---VEDGQTELNAANQRGHIEMVKVLLEGGRNG 607 (784)
Q Consensus 567 ll~~g-~~~~~~---d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~ 607 (784)
.+..| ++||.+ ...|.|-|--|...++.+|+.+||++||-.
T Consensus 236 Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 236 FINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred HHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence 44555 467765 578999999999999999999999999943
No 192
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=51.65 E-value=16 Score=40.25 Aligned_cols=46 Identities=17% Similarity=-0.001 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCCCC------CCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 594 IEMVKVLLEGGRNGNK------PDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 594 ~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.+.+++|.+++++.|- .+..--||||+|+.+|..+++.+|++.|.+
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D 455 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD 455 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC
Confidence 5678888888887653 355678999999999999999999999988
No 193
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=51.39 E-value=14 Score=35.43 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=41.0
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHh
Q 003951 584 ELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLS 635 (784)
Q Consensus 584 ~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~ 635 (784)
-|..|+.+|....+.-.+++|.+++. ++|..|+..+|..|.++++.
T Consensus 146 hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 146 HLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence 46789999999999999999998864 78999999999999998864
No 194
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=50.83 E-value=12 Score=30.50 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=38.6
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhc
Q 003951 583 TELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSY 636 (784)
Q Consensus 583 T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~ 636 (784)
.-+..|...|+.|+++.+++.+ .++ ...+..|...-+.++++.|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 3578999999999999999866 332 3458899999999999999876
No 195
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=48.72 E-value=39 Score=31.37 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=37.7
Q ss_pred CcccccccCCeEEecCCC-CCeEEEEEecEEEEEEe-ecCceeEEEEecCCCeeeh
Q 003951 393 MDAEYFPPKEDVILQNEA-PTDLYILVSGAVDLIHY-VDGQDKVLGKAVAGDAFGE 446 (784)
Q Consensus 393 ~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe 446 (784)
+....+.||...-..--. ..++++|++|...+... .+|++.....+.+||.+=.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 344567777765544322 56899999999999843 3455667788999998754
No 196
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=42.17 E-value=15 Score=36.16 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=21.1
Q ss_pred ccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCC
Q 003951 568 TACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRN 606 (784)
Q Consensus 568 l~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~ 606 (784)
+++|+--|.-|....||=.+|..+|+...-+.|++.|+.
T Consensus 2 le~ga~wn~id~~n~t~gd~a~ern~~rly~~lv~~gv~ 40 (271)
T KOG1709|consen 2 LEYGAGWNFIDYENKTVGDLALERNQSRLYRRLVEAGVP 40 (271)
T ss_pred cccCCCccccChhhCCchHHHHHccHHHHHHHHHHcCCc
Confidence 445555555555555555555555555555555555544
No 197
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=41.10 E-value=10 Score=42.87 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCccHHHHHHHcCCH
Q 003951 570 CPVDVNSKVEDGQTELNAANQRGHI 594 (784)
Q Consensus 570 ~g~~~~~~d~~g~T~Lh~A~~~g~~ 594 (784)
.+...+..+.+|.|+||.+...++.
T Consensus 158 ~~~~~~~~~~~g~t~L~~tl~~~~~ 182 (503)
T KOG0513|consen 158 KYEIADAREVLGNTKLHLTLTKENL 182 (503)
T ss_pred ccccchhhhhcCCceeeeeccCCCc
Confidence 4444444445555555555555544
No 198
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=39.66 E-value=60 Score=38.63 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=44.6
Q ss_pred HHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003951 248 VTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVH 301 (784)
Q Consensus 248 ~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~ 301 (784)
..++|.++.++...| ++..|.+...+++..++.++++++.++..+++++++..
T Consensus 383 ~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~ 435 (656)
T KOG1052|consen 383 LNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTV 435 (656)
T ss_pred ccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677777787777 45999999999999999999999999999999988754
No 199
>COG3212 Predicted membrane protein [Function unknown]
Probab=38.87 E-value=44 Score=31.07 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=28.6
Q ss_pred ccccHHHHHHHHhhhcCCC-cceeeeeCCCceeeeeeeeec
Q 003951 726 LPDSIEELLRIAGEKFGGY-KFTKVVNAENAEIDDICVIRD 765 (784)
Q Consensus 726 ~p~s~~ell~~a~~~~~~~-~~~~~~~~~ga~id~i~~ird 765 (784)
.+-|++++.++|.++.++. ....|-.++|.-|.+|++.-+
T Consensus 81 ~iis~~ea~~iAl~~~~G~v~dieLe~~~g~~vYevei~~~ 121 (144)
T COG3212 81 TIISLEEAKEIALKRVPGKVDDIELEEDNGRLVYEVEIVKD 121 (144)
T ss_pred cccCHHHHHHHHHHHCCCceeEEEEeccCCEEEEEEEEEeC
Confidence 6669999999999999852 223455566666666666665
No 200
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=38.64 E-value=76 Score=31.63 Aligned_cols=65 Identities=25% Similarity=0.357 Sum_probs=44.7
Q ss_pred cccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhh----hhcCCC---------ceeEEE
Q 003951 394 DAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIG----VLYYRP---------QPFTVR 460 (784)
Q Consensus 394 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~----~l~~~~---------~~~tv~ 460 (784)
+...+.+||..-..-...+...+++.|++.+.. .|+.||+++ .|.+.| +.+++.
T Consensus 32 ~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~-------------~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vt 98 (270)
T COG3718 32 RLLRLAAGESATEETGDRERCLVLVTGKATVSA-------------HGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVT 98 (270)
T ss_pred EEEEccCCCcccccCCCceEEEEEEeeeEEEee-------------ccchHhhcccccccccCCCCCeEEecCCceEEEE
Confidence 344577888776666666678888999998762 345555544 455543 568899
Q ss_pred EccceEEEEec
Q 003951 461 TTELSQILRLS 471 (784)
Q Consensus 461 a~~~~~l~~l~ 471 (784)
|.+++++..-+
T Consensus 99 A~t~~~vAvC~ 109 (270)
T COG3718 99 ATTDLEVAVCS 109 (270)
T ss_pred eecceEEEEEe
Confidence 99998887644
No 201
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=38.44 E-value=1.2e+02 Score=27.49 Aligned_cols=68 Identities=9% Similarity=0.072 Sum_probs=39.7
Q ss_pred ccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEe
Q 003951 395 AEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRL 470 (784)
Q Consensus 395 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l 470 (784)
...+.||..+-..-....++++|++|++.+..-.+|++ ..+.+||++---+ +.++. +++.++++++.+
T Consensus 39 ~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~---~~L~aGD~i~~~~---~~~H~--~~N~e~~~~l~v 106 (125)
T PRK13290 39 ETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV---HPIRPGTMYALDK---HDRHY--LRAGEDMRLVCV 106 (125)
T ss_pred EEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE---EEeCCCeEEEECC---CCcEE--EEcCCCEEEEEE
Confidence 34677886543321112469999999999862112433 5689999875322 33433 333367766654
No 202
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=37.35 E-value=1.3e+02 Score=32.96 Aligned_cols=57 Identities=12% Similarity=0.271 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003951 244 WNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVV 300 (784)
Q Consensus 244 ~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~ 300 (784)
.-.|+.+|-|++..+.+++-++....-.....+++++.+++++++.|.+.+++..+.
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iq 154 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQ 154 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346788888888888777655442233334667777888888888888888776653
No 203
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=36.14 E-value=63 Score=26.07 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=23.2
Q ss_pred CeEEEEEecEEEEEEeecCceeEEEEecCCCeee
Q 003951 412 TDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 412 ~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 445 (784)
+++.+|++|.|.+.. .+|.. ..+++||.|=
T Consensus 26 ~E~~~vleG~v~it~-~~G~~---~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTITD-EDGET---VTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEEE-TTTEE---EEEETTEEEE
T ss_pred CEEEEEEEeEEEEEE-CCCCE---EEEcCCcEEE
Confidence 788899999999874 35533 5688999874
No 204
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=35.27 E-value=5.3e+02 Score=31.29 Aligned_cols=49 Identities=6% Similarity=0.273 Sum_probs=36.4
Q ss_pred HHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003951 251 MYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVH 301 (784)
Q Consensus 251 lyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~ 301 (784)
+-|+++-=-+|- --.|..+..++.+.++.+|++++.|...+|+++.+.+
T Consensus 616 llwaLvFnnsVp--v~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIq 664 (1258)
T KOG1053|consen 616 LLWALVFNNSVP--VENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ 664 (1258)
T ss_pred HHHHHHhCCCcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346665433332 2246778899999999999999999999999987653
No 205
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=34.65 E-value=98 Score=29.23 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=37.1
Q ss_pred CCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecHH
Q 003951 411 PTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRT 473 (784)
Q Consensus 411 ~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~ 473 (784)
.+++|++++|.+.+-...+|+- ....+++||+|=--. +.+ .+-++.+.|.++.|.+.
T Consensus 48 tdE~FyqleG~~~l~v~d~g~~-~~v~L~eGd~flvP~---gvp--HsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 48 GEEFFYQLKGEMYLKVTEEGKR-EDVPIREGDIFLLPP---HVP--HSPQRPAGSIGLVIERK 104 (159)
T ss_pred CceEEEEEcceEEEEEEcCCcE-EEEEECCCCEEEeCC---CCC--cccccCCCcEEEEEEeC
Confidence 6899999999999875455542 346789999884322 222 23333566777776653
No 206
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=34.01 E-value=1.9e+02 Score=27.97 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHH
Q 003951 245 NRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYII 292 (784)
Q Consensus 245 ~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~i 292 (784)
-.|.+-+|+|++.-+|-.-.|+.+.+..=|-.+..=.+++.++.+.++
T Consensus 131 P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~il 178 (180)
T PF07077_consen 131 PDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVIL 178 (180)
T ss_pred CCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999988899999888777777666666655555544
No 207
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=32.95 E-value=1.3e+02 Score=24.10 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=28.2
Q ss_pred CcEEEEccc--cHHHHHHHHhhhcCCCccee-eeeCCCceee
Q 003951 720 LGKLIVLPD--SIEELLRIAGEKFGGYKFTK-VVNAENAEID 758 (784)
Q Consensus 720 ~gk~~~~p~--s~~ell~~a~~~~~~~~~~~-~~~~~ga~id 758 (784)
.-|++.+|+ .++..++.|+++|.....+. +.+.||--|.
T Consensus 16 p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GIn 57 (76)
T PF03671_consen 16 PYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGIN 57 (76)
T ss_dssp -EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-
T ss_pred cceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccc
Confidence 678999998 49999999999999755443 6677776553
No 208
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=30.52 E-value=1e+02 Score=27.02 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=32.6
Q ss_pred cCCChHHHHHHHHHHHHHHhh-----------cCCcHHHHHhcCCHHHHHHHHHH
Q 003951 323 NHLPPHIHDQMLSHICLKFKT-----------EGLKQQETLVGLPKAIRSSIAHY 366 (784)
Q Consensus 323 ~~l~~~l~~~v~~~~~~~~~~-----------~~~~~~~~l~~Lp~~Lr~~i~~~ 366 (784)
.-||++++..|..++.-.-.. ...+.-.++..||+.||.+|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 358999999999887644321 12345679999999999998654
No 209
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=29.95 E-value=46 Score=36.35 Aligned_cols=45 Identities=20% Similarity=0.384 Sum_probs=38.9
Q ss_pred CCCeeehhhhhcCCCceeEEEEcc-ceEEEEecHHHHHHHHHhcHH
Q 003951 440 AGDAFGEIGVLYYRPQPFTVRTTE-LSQILRLSRTSLMNSIQANME 484 (784)
Q Consensus 440 ~G~~fGe~~~l~~~~~~~tv~a~~-~~~l~~l~~~~f~~ll~~~p~ 484 (784)
+||-||..++....|+.+++...+ +|.+++.++.+|..++++-..
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~vEa 46 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDVEA 46 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhhhh
Confidence 589999999999999998877665 699999999999999877543
No 210
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=29.93 E-value=8e+02 Score=27.84 Aligned_cols=53 Identities=15% Similarity=0.427 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHH-HHHHhhhccccccCCcccCCchhHHHHHHHHHHH
Q 003951 206 LFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTA-MYWSITTLTTTGYGDLHAENPREMLFDIFYMLFN 284 (784)
Q Consensus 206 l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~s-lyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g 284 (784)
..+-+|..+++|..++ .|...+-| ++|+... |++......|.+..+....+
T Consensus 124 ~~~~~W~~~~FYv~~e---------------------lw~~~vvS~lFW~fan-------di~t~~qakRfy~l~~~gan 175 (472)
T TIGR00769 124 AILRIWSFALFYVMAE---------------------LWGSVVLSLLFWGFAN-------QITTIDEAKRFYALFGLGAN 175 (472)
T ss_pred HHHhhhhHHHHHHHHH---------------------HHHHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHHH
Confidence 3567888888888773 56778888 9999986 66666677788888766544
Q ss_pred HH
Q 003951 285 LG 286 (784)
Q Consensus 285 ~~ 286 (784)
++
T Consensus 176 lg 177 (472)
T TIGR00769 176 VA 177 (472)
T ss_pred HH
Confidence 43
No 211
>PRK09108 type III secretion system protein HrcU; Validated
Probab=29.28 E-value=6e+02 Score=27.61 Aligned_cols=61 Identities=13% Similarity=0.190 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 003951 275 LFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLS 335 (784)
Q Consensus 275 i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~ 335 (784)
++.++..++..++.++++-.+..+.-+..+..++.+-.-+++++-+|...=+|+++.|+++
T Consensus 181 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 181 LWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 4444444444445555554455555454444555555566777777777777777777665
No 212
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=29.14 E-value=2.2e+02 Score=21.78 Aligned_cols=11 Identities=9% Similarity=0.353 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 003951 309 FRETVRAVSEF 319 (784)
Q Consensus 309 ~~~~~~~~~~~ 319 (784)
..++++.+-+.
T Consensus 44 ~eqKLDrIIeL 54 (58)
T PF13314_consen 44 MEQKLDRIIEL 54 (58)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 213
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=28.95 E-value=1.9e+02 Score=28.36 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=32.1
Q ss_pred ccccccCCeE---------EecCCCCCeEEEEEecEEEEEEe-ecCceeEEEEecCCCeee
Q 003951 395 AEYFPPKEDV---------ILQNEAPTDLYILVSGAVDLIHY-VDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 395 ~~~~~~~e~I---------~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fG 445 (784)
...+.||... +.+.....++|+|++|+..+..+ .+| +.....+.+||.+=
T Consensus 72 ~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G-~~~~~~v~pGd~v~ 131 (191)
T PRK04190 72 TTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEG-EARWIEMEPGTVVY 131 (191)
T ss_pred EEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCC-cEEEEEECCCCEEE
Confidence 3456666642 23333346899999999988853 233 23456789999863
No 214
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=28.75 E-value=2.3e+02 Score=34.01 Aligned_cols=121 Identities=12% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc--cccCCCCCCchHHHHHHHHHHHhhhcc
Q 003951 183 ARLEKDIRFNYFWTR-CTKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIG--AVYPNFKEETLWNRYVTAMYWSITTLT 259 (784)
Q Consensus 183 ~~l~~~~~~~~~~~~-~~~li~~~l~~~h~~aci~y~i~~~~~~~~~~Wi~--~~~~~~~~~~~~~~Y~~slyw~i~tlt 259 (784)
++-|+.-.+.|..++ +.+++...++.+|+++++.... |+. ..+.+.....-....+.|+|-|+..+.
T Consensus 435 ~qreeLGGiEYRaLk~L~~Iv~~Y~~~~~llG~i~l~~----------wi~~~~~~~~~l~~~gin~~W~aiFhAVSAFn 504 (800)
T TIGR00934 435 EQKDELGGIEYRALKCLCSIVLVYFLGFNILGFVLLLP----------WINHVKTYSEVVRSKGVSPTWWGFFTAMSAFA 504 (800)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhcCccHHHHHhhcCccHHHHHHHHHHHHHh
Q ss_pred ccccCCcccCC-------chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhHHHHHHHHH
Q 003951 260 TTGYGDLHAEN-------PREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRETVR 314 (784)
Q Consensus 260 TvGyGDi~p~~-------~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~ 314 (784)
..|+ ++.|.+ +.=.+..++.+++|-..|..+.-.+.-+.........+.++.+.
T Consensus 505 NAGF-sL~~dSM~~F~~~~~vllvm~~LIi~GntGFPVllrliiw~~~k~~~~~s~~~e~l~ 565 (800)
T TIGR00934 505 NLGL-TLTPESMVSFNKNSYLLLLMIWFIIIGNTGFPIFLRLIIWILFKISPDLSKRKESLG 565 (800)
T ss_pred cCCC-CcCCCcchhhccCccHHHHHHHHHHHcccchHHHHHHHHHHHhhccccccchhhhhh
No 215
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=27.41 E-value=4.3e+02 Score=26.08 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=42.6
Q ss_pred hcCCHHHHHHHHHHhhhhhhccccccc-cCCHHHHHHHHHcCcccc--cccCCeEEecCCCCC
Q 003951 353 VGLPKAIRSSIAHYLFFPIVQNVYLFQ-GVSHDFLFQLVSDMDAEY--FPPKEDVILQNEAPT 412 (784)
Q Consensus 353 ~~Lp~~Lr~~i~~~~~~~~l~~~~lf~-~~s~~~l~~l~~~~~~~~--~~~~e~I~~~g~~~~ 412 (784)
..+|.. ...+...+...+++-.-.|. ..++...++......+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 355666 44455555555555444453 578888899999999988 999999999999754
No 216
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=26.98 E-value=51 Score=37.28 Aligned_cols=53 Identities=13% Similarity=0.310 Sum_probs=45.9
Q ss_pred HHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003951 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVV 300 (784)
Q Consensus 247 Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~ 300 (784)
...|+||++..+.--| -||.|.+..++|..-++-++.+++.+...+|+++.+.
T Consensus 596 ifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 596 IFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 4589999999999989 5999999999999999988888888777788777654
No 217
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=26.75 E-value=5.8e+02 Score=27.63 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 003951 276 FDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLS 335 (784)
Q Consensus 276 ~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~ 335 (784)
..++..++..++.++++-.+..+.-+.....++.+-.-+++++-+|...=+|+++.|+++
T Consensus 180 ~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~ 239 (347)
T TIGR00328 180 LDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQ 239 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 333343444444444443344444444444445555556777777777777777777665
No 218
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=25.62 E-value=6.1e+02 Score=27.50 Aligned_cols=61 Identities=10% Similarity=0.159 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 003951 275 LFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLS 335 (784)
Q Consensus 275 i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~ 335 (784)
+...++.++..++.++++-.+..+.-+.....++.+-.-+++++-.|...=+|+++.|+++
T Consensus 179 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~ 239 (349)
T PRK12721 179 VSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRE 239 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 3334444444444444444444555444444455555566777777777778888777765
No 219
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=24.83 E-value=1.3e+02 Score=24.05 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=29.5
Q ss_pred CcEEEEcccc--HHHHHHHHhhhcCCCcce-eeeeCCCceee
Q 003951 720 LGKLIVLPDS--IEELLRIAGEKFGGYKFT-KVVNAENAEID 758 (784)
Q Consensus 720 ~gk~~~~p~s--~~ell~~a~~~~~~~~~~-~~~~~~ga~id 758 (784)
.=|++.+|++ +...++.|++.|+....+ -+.+.||.-|.
T Consensus 16 pfkvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGIN 57 (82)
T cd01766 16 PFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGIN 57 (82)
T ss_pred cceEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccC
Confidence 4578889985 899999999999975444 36777776553
No 220
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=24.77 E-value=1.8e+02 Score=28.07 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=37.8
Q ss_pred CCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecHH
Q 003951 409 EAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRT 473 (784)
Q Consensus 409 ~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~ 473 (784)
+..++++++++|.+.+...++|+ .....+.+||+|=--. +.++ +-++...|..+.+.+.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~-~~~v~L~eGd~fllP~---gvpH--sP~r~~~tv~LviE~~ 110 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGK-RRDVPIREGEMFLLPP---HVPH--SPQREAGSIGLVIERK 110 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCc-eeeEEECCCCEEEeCC---CCCc--CCccCCCeEEEEEEeC
Confidence 45688999999999888644553 2245689999884332 2222 2233566777777553
No 221
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=24.55 E-value=2.2e+02 Score=31.37 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhccccccC--CcccCCchhHHHHHHHHHHHHHH
Q 003951 245 NRYVTAMYWSITTLTTTGYG--DLHAENPREMLFDIFYMLFNLGL 287 (784)
Q Consensus 245 ~~Y~~slyw~i~tltTvGyG--Di~p~~~~e~i~~i~~~l~g~~~ 287 (784)
.....+.++.+++++|.|+. |...-++..+++.+++|++|-+-
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~ 274 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS 274 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence 45678889999999999986 44444566678888888887543
No 222
>PRK07668 hypothetical protein; Validated
Probab=24.45 E-value=2.4e+02 Score=28.92 Aligned_cols=59 Identities=10% Similarity=0.158 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH---hhcCCcHHHHHhcCCHHHHHHHHHH
Q 003951 308 NFRETVRAVSEFATRNHLPPHIHDQMLSHICLKF---KTEGLKQQETLVGLPKAIRSSIAHY 366 (784)
Q Consensus 308 ~~~~~~~~~~~~m~~~~l~~~l~~~v~~~~~~~~---~~~~~~~~~~l~~Lp~~Lr~~i~~~ 366 (784)
+-++-+.++..+++..+++++-++++..-+.-.. +.+|.+.++++.+=|++.-+++...
T Consensus 5 eNeefl~~L~~yL~~~glseeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~sPk~yA~EL~~~ 66 (254)
T PRK07668 5 EGRKFLDDTRVYLIAKGIKEEDIESFLEDAELHLIEGEKDGKTVEDIFGDSPKEYANELVKE 66 (254)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCHHHHHHHHhcc
Confidence 3445567778899989999888877765444333 5679999999998666666666554
No 223
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=23.87 E-value=1.6e+02 Score=32.17 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=33.4
Q ss_pred ccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeee
Q 003951 395 AEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 395 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 445 (784)
...+.||...-..--...++.+|++|++++.....+.+.....+++||++=
T Consensus 71 ~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~ 121 (367)
T TIGR03404 71 NMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWY 121 (367)
T ss_pred EEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEE
Confidence 345667765543222346799999999999853322333445899999884
No 224
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=23.86 E-value=1.3e+02 Score=26.36 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=30.6
Q ss_pred CCChHHHHHHHHHHHHHHhh---------cC-----CcHHHHHhcCCHHHHHHHHHHhhhh
Q 003951 324 HLPPHIHDQMLSHICLKFKT---------EG-----LKQQETLVGLPKAIRSSIAHYLFFP 370 (784)
Q Consensus 324 ~l~~~l~~~v~~~~~~~~~~---------~~-----~~~~~~l~~Lp~~Lr~~i~~~~~~~ 370 (784)
-||.+++.+|.......-+. .. --..++|+.||+.||.+|..+....
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 47899999986544322110 00 0125899999999999987765443
No 225
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=23.77 E-value=2.6e+02 Score=31.29 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=8.0
Q ss_pred chhHHHHHHHHHHHhhhee
Q 003951 91 LLIIDNIVNGFFAIDIILT 109 (784)
Q Consensus 91 ~~~~~~~~~~~f~iDi~l~ 109 (784)
+.+||++..+=|.+++++.
T Consensus 275 LNIIDllAIlPFYielll~ 293 (477)
T KOG3713|consen 275 LNIIDLLAILPFYLELLLT 293 (477)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 226
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=23.56 E-value=1.4e+02 Score=26.93 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=37.4
Q ss_pred CcccccccCCeEEecCCC-CCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehh
Q 003951 393 MDAEYFPPKEDVILQNEA-PTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEI 447 (784)
Q Consensus 393 ~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~ 447 (784)
+....|.||+.+-..--+ .+...+|++|.+.+... |.. ..+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~~---~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GEK---KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CCc---eEecCCCEEEEC
Confidence 345568888888777666 66899999999999853 443 457899998653
No 227
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=23.19 E-value=90 Score=30.97 Aligned_cols=40 Identities=23% Similarity=0.094 Sum_probs=37.9
Q ss_pred HHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 600 LLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 600 Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|++.||--|..|....||-++|.+.|+.+..+.|++.|+.
T Consensus 1 lle~ga~wn~id~~n~t~gd~a~ern~~rly~~lv~~gv~ 40 (271)
T KOG1709|consen 1 LLEYGAGWNFIDYENKTVGDLALERNQSRLYRRLVEAGVP 40 (271)
T ss_pred CcccCCCccccChhhCCchHHHHHccHHHHHHHHHHcCCc
Confidence 5789999999999999999999999999999999999988
No 228
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=22.77 E-value=2.2e+02 Score=22.08 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=30.5
Q ss_pred CcEEEEccc--cHHHHHHHHhhhcCCCcceeeeeCCCceeeee----eeeecCCEEEEEe
Q 003951 720 LGKLIVLPD--SIEELLRIAGEKFGGYKFTKVVNAENAEIDDI----CVIRDGDHLFLLQ 773 (784)
Q Consensus 720 ~gk~~~~p~--s~~ell~~a~~~~~~~~~~~~~~~~ga~id~i----~~ird~~~l~~~~ 773 (784)
+|+-+.+|+ |+++|++. ++.....-.+--+|.-|..- ..++|||.+-++.
T Consensus 5 Ng~~~~~~~~~tv~~ll~~----l~~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 5 NGEPREVEEGATLAELLEE----LGLDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred CCeEEEcCCCCCHHHHHHH----cCCCCCcEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 466666654 78998863 33211112333455555555 5899999998764
No 229
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=22.68 E-value=2.1e+02 Score=25.69 Aligned_cols=43 Identities=14% Similarity=0.309 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCCcHHHHHhcCCH
Q 003951 315 AVSEFATRNHLPPHIHDQMLSHICLKFKTEGLKQQETLVGLPK 357 (784)
Q Consensus 315 ~~~~~m~~~~l~~~l~~~v~~~~~~~~~~~~~~~~~~l~~Lp~ 357 (784)
.+..|-.++-+-+-|+.+-.+++.-.++.+--.|.+++++.|-
T Consensus 64 kiEd~~a~nai~PiL~AErDr~~l~~lrkn~eeEaeiMKdVPg 106 (146)
T KOG3300|consen 64 KIEDYAARNAILPILQAERDRRFLSELRKNLEEEAEIMKDVPG 106 (146)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHccCCC
Confidence 3445556666666666555555544454433345667776664
No 230
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.55 E-value=7.5e+02 Score=27.22 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=25.7
Q ss_pred HHHHhhHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 003951 289 SYIIGNMTNLVVHWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLS 335 (784)
Q Consensus 289 a~~ig~i~~ii~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~ 335 (784)
++++-.+..+.-+.....++.+-.-+++++-+|...=+|+++.|+++
T Consensus 200 ~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~Rq 246 (386)
T PRK12468 200 GLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQ 246 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 33333344444444444444444556666667777777777666655
No 231
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=21.53 E-value=1.8e+02 Score=26.25 Aligned_cols=48 Identities=15% Similarity=0.352 Sum_probs=32.1
Q ss_pred cCcccccccCCeE-EecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCee
Q 003951 392 DMDAEYFPPKEDV-ILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAF 444 (784)
Q Consensus 392 ~~~~~~~~~~e~I-~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 444 (784)
.+....+.||+.+ .+.-...++.|+|++|...+.. +|++ ..+++||++
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~--~~~~---~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI--GGEE---VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE--CCEE---EEecCCCEE
Confidence 3455667777775 3333336889999999999885 3333 346788865
No 232
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=21.49 E-value=7.9e+02 Score=26.54 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 003951 276 FDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLSH 336 (784)
Q Consensus 276 ~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~~ 336 (784)
+..+..++..++.++++-.+..+.-+.....++.+-.-+++++-.|...=+|+++.|+++-
T Consensus 179 ~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~ 239 (342)
T TIGR01404 179 GELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRREL 239 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3333444444444444434444444444444455555667777777777788887777663
No 233
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=21.18 E-value=1.4e+02 Score=27.44 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=34.8
Q ss_pred cccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCc----eeEEE--EecCCCeeeh
Q 003951 394 DAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQ----DKVLG--KAVAGDAFGE 446 (784)
Q Consensus 394 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~----~~~~~--~l~~G~~fGe 446 (784)
....+.||......--....+++|.+|+..+. ...++. ..... .+++||+|=.
T Consensus 37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~v 96 (144)
T PF00190_consen 37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVV 96 (144)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE
T ss_pred EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceee
Confidence 34445777776665447788999999999865 333331 12223 5999999853
No 234
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=20.76 E-value=3e+02 Score=21.25 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=30.1
Q ss_pred CcEEEEccc--cHHHHHHHHhhhcCCCcceee-eeCCCceee----eeeeeecCCEEEEEe
Q 003951 720 LGKLIVLPD--SIEELLRIAGEKFGGYKFTKV-VNAENAEID----DICVIRDGDHLFLLQ 773 (784)
Q Consensus 720 ~gk~~~~p~--s~~ell~~a~~~~~~~~~~~~-~~~~ga~id----~i~~ird~~~l~~~~ 773 (784)
+|+.+.+|+ |+.+|++ .++. .+..+ +--+|.-|. +=..++|||++-++.
T Consensus 4 Ng~~~~~~~~~tv~~ll~----~l~~-~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLE----SLGL-DPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred CCeEEEcCCCCcHHHHHH----HcCC-CCCeEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 577777776 6888877 4443 33333 333444442 234799999988764
No 235
>PRK08156 type III secretion system protein SpaS; Validated
Probab=20.70 E-value=1e+03 Score=25.96 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=24.8
Q ss_pred HHHHHHHHhhHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 003951 285 LGLTSYIIGNMTNLVVHWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLS 335 (784)
Q Consensus 285 ~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~ 335 (784)
.++.++++-.+..+.-+.....++.+-.-+++++-.|...=+|+++.|+++
T Consensus 184 ~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~ 234 (361)
T PRK08156 184 TFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 333344433344444333333334444445566666666666666666554
No 236
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=20.61 E-value=3e+02 Score=23.14 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHH-hhcCCcHHHHHh
Q 003951 327 PHIHDQMLSHICLKF-KTEGLKQQETLV 353 (784)
Q Consensus 327 ~~l~~~v~~~~~~~~-~~~~~~~~~~l~ 353 (784)
+-||+--..-+-|+| +++|-.+++.++
T Consensus 56 pflqeftqhplfyrwirtegkkeq~~~n 83 (126)
T PF13120_consen 56 PFLQEFTQHPLFYRWIRTEGKKEQKTFN 83 (126)
T ss_pred HHHHHHhcCcHHHHHHHhhchHHHHHHH
Confidence 344444444466778 777766665544
No 237
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=20.60 E-value=1.9e+02 Score=31.53 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=34.6
Q ss_pred CcccccccCCeEEecCCC-CCeEEEEEecEEEEEE-eecCceeEEEEecCCCee
Q 003951 393 MDAEYFPPKEDVILQNEA-PTDLYILVSGAVDLIH-YVDGQDKVLGKAVAGDAF 444 (784)
Q Consensus 393 ~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~f 444 (784)
+....+.||...-..=-. .+++++|++|++++.. +.+|+.+ ...+++||++
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~-~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNAR-TFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEE-EEEECCCCEE
Confidence 345567777765543333 5789999999999884 3444433 3569999976
No 238
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=20.26 E-value=2.9e+02 Score=19.67 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHH
Q 003951 307 RNFRETVRAVSEFATRN-HLPPHIHDQMLSHICLKF 341 (784)
Q Consensus 307 ~~~~~~~~~~~~~m~~~-~l~~~l~~~v~~~~~~~~ 341 (784)
.-|.+-+.++.+|+... .+++.++.++.+|+.-..
T Consensus 5 ~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~ 40 (45)
T smart00511 5 SGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHL 40 (45)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 35888999999999864 678999999999986543
Done!