Query 003951
Match_columns 784
No_of_seqs 677 out of 4561
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 09:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 1.1E-38 3.8E-43 346.9 9.6 347 52-501 3-353 (355)
2 2ptm_A Hyperpolarization-activ 100.0 1.5E-30 5E-35 258.8 21.4 195 301-498 2-196 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 9E-30 3.1E-34 253.9 21.8 197 301-501 3-199 (202)
4 3ukn_A Novel protein similar t 100.0 4.2E-30 1.5E-34 258.3 18.7 199 296-499 1-202 (212)
5 1orq_C Potassium channel; volt 99.9 2E-25 6.8E-30 225.6 16.7 210 61-301 9-220 (223)
6 2r9r_B Paddle chimera voltage 99.9 1.8E-22 6.1E-27 227.0 11.8 231 44-304 165-433 (514)
7 4gpm_A Engineered protein OR26 99.9 1.2E-22 4E-27 195.8 6.0 133 509-641 13-163 (169)
8 4f8a_A Potassium voltage-gated 99.8 1.6E-19 5.6E-24 172.0 15.0 142 348-493 5-148 (160)
9 3gyd_A CNMP-BD protein, cyclic 99.8 4.7E-18 1.6E-22 166.6 16.6 155 346-500 11-174 (187)
10 3mdp_A Cyclic nucleotide-bindi 99.8 4.3E-18 1.5E-22 158.5 14.5 131 369-499 5-139 (142)
11 2pqq_A Putative transcriptiona 99.8 8.5E-18 2.9E-22 157.8 15.6 135 369-503 4-139 (149)
12 1n0q_A 3ANK, 3 ankyrin repeats 99.7 2.3E-18 8E-23 147.9 8.4 87 553-639 2-93 (93)
13 4b93_B Ankyrin repeat domain-c 99.7 5.4E-19 1.8E-23 183.9 5.1 126 514-639 67-210 (269)
14 1d9s_A Cyclin-dependent kinase 99.7 4.1E-19 1.4E-23 164.5 3.2 118 522-639 3-136 (136)
15 2a9h_A Voltage-gated potassium 99.7 3.5E-18 1.2E-22 159.5 9.2 85 206-306 60-144 (155)
16 1ihb_A P18-INK4C(INK6), cyclin 99.7 1.9E-18 6.6E-23 164.8 7.5 129 511-639 16-162 (162)
17 2z69_A DNR protein; beta barre 99.7 1.9E-17 6.5E-22 156.4 14.3 134 369-502 11-146 (154)
18 3idb_B CAMP-dependent protein 99.7 1E-17 3.4E-22 160.0 11.7 130 362-491 30-159 (161)
19 3ocp_A PRKG1 protein; serine/t 99.7 1.6E-17 5.6E-22 154.2 12.0 131 354-488 7-137 (139)
20 3dn7_A Cyclic nucleotide bindi 99.7 1.6E-17 5.5E-22 163.7 11.7 136 368-503 5-142 (194)
21 3fx3_A Cyclic nucleotide-bindi 99.7 4.5E-17 1.5E-21 166.0 15.3 153 368-520 9-162 (237)
22 2y1l_E Darpin-8.4; hydrolase-i 99.7 3.8E-18 1.3E-22 164.2 5.9 127 511-637 25-169 (169)
23 1zyb_A Transcription regulator 99.7 1E-16 3.5E-21 162.8 16.8 153 368-520 16-172 (232)
24 4ev0_A Transcription regulator 99.7 3.2E-17 1.1E-21 164.4 12.8 149 372-520 1-150 (216)
25 4gpm_A Engineered protein OR26 99.7 1.7E-17 5.8E-22 159.6 8.6 99 541-639 22-128 (169)
26 3twr_A Tankyrase-2; ankyrin re 99.7 1.2E-17 4E-22 159.9 6.8 125 513-638 21-164 (165)
27 3d0s_A Transcriptional regulat 99.7 4.1E-17 1.4E-21 165.1 11.0 135 369-503 5-140 (227)
28 3dv8_A Transcriptional regulat 99.7 1.2E-16 4.2E-21 160.6 13.9 151 370-520 3-156 (220)
29 1bi7_B P16INK4A, MTS1, multipl 99.7 3.5E-18 1.2E-22 162.2 2.3 87 553-639 45-136 (156)
30 4b93_B Ankyrin repeat domain-c 99.7 6.8E-18 2.3E-22 175.6 4.4 120 513-634 99-236 (269)
31 3v31_A Ankyrin repeat family A 99.7 4.9E-18 1.7E-22 163.0 2.9 130 510-639 13-160 (167)
32 3f6q_A Integrin-linked protein 99.7 9.9E-18 3.4E-22 162.9 4.9 128 512-639 17-163 (179)
33 2rfm_A Putative ankyrin repeat 99.7 6.8E-18 2.3E-22 166.0 3.7 127 511-637 46-190 (192)
34 3e97_A Transcriptional regulat 99.7 2.1E-16 7.1E-21 160.3 14.5 135 369-503 5-140 (231)
35 3v30_A DNA-binding protein rfx 99.7 6.5E-18 2.2E-22 162.9 2.9 129 511-639 13-160 (172)
36 3c5r_A BARD-1, BRCA1-associate 99.7 3.7E-18 1.3E-22 158.1 0.9 87 553-639 10-101 (137)
37 1vp6_A CNBD, cyclic-nucleotide 99.7 1.4E-16 4.8E-21 147.5 11.6 126 369-500 10-135 (138)
38 1awc_B Protein (GA binding pro 99.7 2E-17 6.9E-22 156.3 5.9 120 513-633 15-152 (153)
39 1oy3_D Transcription factor in 99.7 3.8E-17 1.3E-21 170.6 8.0 129 511-639 56-250 (282)
40 2gau_A Transcriptional regulat 99.7 2E-16 6.7E-21 160.7 12.8 147 374-520 14-161 (232)
41 1bd8_A P19INK4D CDK4/6 inhibit 99.7 4.6E-17 1.6E-21 154.1 7.4 123 513-636 15-155 (156)
42 1yyh_A HN1;, notch 1, ankyrin 99.7 3.1E-17 1E-21 169.0 6.1 130 510-639 67-215 (253)
43 3iwz_A CAP-like, catabolite ac 99.7 3.5E-16 1.2E-20 158.5 13.8 152 369-520 10-168 (230)
44 1ikn_D Protein (I-kappa-B-alph 99.7 1.1E-16 3.9E-21 162.7 9.8 128 512-639 57-209 (236)
45 4hbd_A KN motif and ankyrin re 99.7 7E-17 2.4E-21 168.7 7.9 130 509-638 120-274 (276)
46 2ih3_C Voltage-gated potassium 99.7 2.6E-16 9E-21 141.3 10.5 59 246-304 61-119 (122)
47 1ycs_B 53BP2, P53BP2; ankyrin 99.7 5.7E-17 1.9E-21 165.5 6.6 111 529-639 3-128 (239)
48 3t8k_A Uncharacterized protein 99.6 1E-17 3.5E-22 163.9 0.2 126 514-639 20-179 (186)
49 1n0r_A 4ANK, 4 ankyrin repeats 99.6 3.8E-17 1.3E-21 148.2 4.0 87 553-639 35-126 (126)
50 3dkw_A DNR protein; CRP-FNR, H 99.6 6.9E-17 2.4E-21 163.4 6.0 133 369-501 8-142 (227)
51 2jab_A H10-2-G3; HER2, darpin, 99.6 3E-16 1E-20 145.0 9.1 85 553-637 47-136 (136)
52 2rfm_A Putative ankyrin repeat 99.6 4.1E-17 1.4E-21 160.4 3.3 117 523-639 27-159 (192)
53 2rfa_A Transient receptor pote 99.6 9.3E-17 3.2E-21 162.8 6.0 129 511-639 14-183 (232)
54 3aji_A 26S proteasome non-ATPa 99.6 9.9E-17 3.4E-21 162.4 6.0 129 511-639 51-197 (231)
55 2f8y_A Notch homolog 1, transl 99.6 1.2E-16 4.1E-21 160.9 6.0 119 521-639 48-183 (223)
56 3pna_A CAMP-dependent protein 99.6 1.3E-15 4.5E-20 144.0 12.6 118 367-488 35-152 (154)
57 3hra_A Ankyrin repeat family p 99.6 1.1E-16 3.6E-21 158.4 5.0 125 513-637 52-201 (201)
58 3ryp_A Catabolite gene activat 99.6 1.3E-15 4.3E-20 152.0 12.7 145 376-520 2-148 (210)
59 3shr_A CGMP-dependent protein 99.6 1.5E-15 5.2E-20 160.4 13.9 145 350-498 19-163 (299)
60 4ava_A Lysine acetyltransferas 99.6 1.8E-15 6E-20 162.6 14.5 129 369-499 12-141 (333)
61 2f8y_A Notch homolog 1, transl 99.6 1.7E-16 5.7E-21 159.8 6.0 129 511-639 69-216 (223)
62 1wgp_A Probable cyclic nucleot 99.6 3E-16 1E-20 145.1 7.2 118 369-486 5-133 (137)
63 3kea_A K1L; tropism, ANK repea 99.6 6.9E-17 2.4E-21 169.6 3.0 127 514-640 13-155 (285)
64 1yyh_A HN1;, notch 1, ankyrin 99.6 1.4E-16 4.8E-21 164.1 5.2 128 512-639 102-248 (253)
65 2oz6_A Virulence factor regula 99.6 2.2E-15 7.4E-20 149.9 13.7 140 381-520 1-145 (207)
66 3aaa_C Myotrophin, protein V-1 99.6 3.2E-16 1.1E-20 142.1 6.7 89 551-639 5-98 (123)
67 3aji_A 26S proteasome non-ATPa 99.6 7.8E-17 2.7E-21 163.2 3.0 125 515-639 88-230 (231)
68 2l6b_A NR1C; ankyrin, consensu 99.6 5.1E-16 1.8E-20 138.8 7.9 87 553-639 9-100 (115)
69 2xai_A ASB-9, ankyrin repeat a 99.6 1.3E-16 4.3E-21 165.3 4.5 128 511-639 47-191 (261)
70 1s70_B 130 kDa myosin-binding 99.6 1.9E-16 6.6E-21 167.0 5.7 61 579-639 197-257 (299)
71 3shr_A CGMP-dependent protein 99.6 1.1E-15 3.9E-20 161.4 11.5 136 367-502 154-291 (299)
72 2etb_A Transient receptor pote 99.6 1.2E-16 4E-21 164.8 3.5 119 521-639 29-206 (256)
73 4h33_A LMO2059 protein; bilaye 99.6 5.9E-16 2E-20 141.9 7.7 92 246-337 43-134 (137)
74 3vou_A ION transport 2 domain 99.6 1.1E-14 3.8E-19 135.9 15.8 113 198-332 26-148 (148)
75 2fmy_A COOA, carbon monoxide o 99.6 1E-15 3.5E-20 154.0 9.4 145 369-520 3-147 (220)
76 2rfa_A Transient receptor pote 99.6 1.3E-16 4.4E-21 161.7 2.7 129 511-639 48-222 (232)
77 3v31_A Ankyrin repeat family A 99.6 2.3E-16 7.9E-21 151.2 4.2 110 530-639 2-127 (167)
78 1ikn_D Protein (I-kappa-B-alph 99.6 4.3E-16 1.5E-20 158.4 6.1 118 522-639 36-176 (236)
79 1k1a_A B-cell lymphoma 3-encod 99.6 3.2E-16 1.1E-20 159.5 5.2 130 510-639 56-208 (241)
80 2dzn_A Probable 26S proteasome 99.6 4.2E-16 1.4E-20 157.4 5.9 130 510-639 46-200 (228)
81 2vge_A RELA-associated inhibit 99.6 1.3E-16 4.3E-21 161.8 1.8 119 521-639 8-148 (229)
82 2etb_A Transient receptor pote 99.6 5.6E-17 1.9E-21 167.2 -1.4 113 527-639 86-246 (256)
83 3c5r_A BARD-1, BRCA1-associate 99.6 1.2E-15 4.1E-20 141.1 7.6 118 521-639 1-134 (137)
84 2xai_A ASB-9, ankyrin repeat a 99.6 4.8E-16 1.7E-20 160.8 5.4 129 511-640 14-160 (261)
85 3b7b_A Euchromatic histone-lys 99.6 6.8E-16 2.3E-20 156.9 6.4 129 511-639 55-202 (237)
86 1n11_A Ankyrin; clathrin, BAND 99.6 4.8E-16 1.7E-20 173.5 5.4 126 514-639 226-369 (437)
87 1k1a_A B-cell lymphoma 3-encod 99.6 2.6E-16 8.8E-21 160.3 2.9 117 523-639 108-241 (241)
88 3d9h_A CDNA FLJ77766, highly s 99.6 5.9E-16 2E-20 162.4 5.7 128 511-639 103-247 (285)
89 1oy3_D Transcription factor in 99.6 5.4E-16 1.9E-20 161.8 5.3 129 511-639 20-217 (282)
90 3kcc_A Catabolite gene activat 99.6 5.9E-15 2E-19 152.5 12.7 142 379-520 55-198 (260)
91 1dcq_A PYK2-associated protein 99.6 1.2E-15 4.2E-20 159.2 7.5 89 553-641 169-265 (278)
92 2fo1_E LIN-12 protein; beta-ba 99.6 4.4E-16 1.5E-20 170.1 4.0 128 512-639 211-371 (373)
93 1ycs_B 53BP2, P53BP2; ankyrin 99.6 2E-16 6.9E-21 161.4 1.1 125 514-639 19-164 (239)
94 3hra_A Ankyrin repeat family p 99.6 8.1E-16 2.8E-20 152.0 5.3 129 511-639 16-170 (201)
95 1o5l_A Transcriptional regulat 99.6 3.8E-15 1.3E-19 149.1 10.1 128 375-502 4-133 (213)
96 1ft9_A Carbon monoxide oxidati 99.6 2.2E-15 7.4E-20 151.9 7.9 143 371-520 1-143 (222)
97 2d93_A RAP guanine nucleotide 99.6 1E-15 3.4E-20 141.1 4.9 125 356-484 2-128 (134)
98 1awc_B Protein (GA binding pro 99.6 3E-15 1E-19 141.2 8.2 89 551-639 32-125 (153)
99 3tnp_B CAMP-dependent protein 99.6 3.5E-15 1.2E-19 164.7 10.0 128 361-488 136-263 (416)
100 3jxi_A Vanilloid receptor-rela 99.6 1.9E-16 6.5E-21 163.6 -0.7 116 524-639 86-250 (260)
101 3e6c_C CPRK, cyclic nucleotide 99.6 9.6E-15 3.3E-19 150.0 12.1 148 370-520 9-157 (250)
102 3v30_A DNA-binding protein rfx 99.6 1.1E-15 3.8E-20 147.2 4.7 87 553-639 36-127 (172)
103 2zgd_A 3 repeat synthetic anky 99.6 1.7E-15 5.8E-20 134.4 5.5 84 550-633 21-109 (110)
104 3ljn_A Hypothetical protein; a 99.6 1E-15 3.5E-20 166.5 4.9 87 553-639 138-236 (364)
105 1n11_A Ankyrin; clathrin, BAND 99.6 1.6E-15 5.4E-20 169.3 6.6 129 511-639 256-402 (437)
106 2pnn_A Transient receptor pote 99.6 3.4E-16 1.2E-20 163.0 1.0 113 527-639 97-258 (273)
107 2jab_A H10-2-G3; HER2, darpin, 99.6 1.9E-15 6.7E-20 139.5 5.8 87 553-639 14-105 (136)
108 3jxi_A Vanilloid receptor-rela 99.6 4.8E-16 1.7E-20 160.5 1.8 119 521-639 32-210 (260)
109 1d9s_A Cyclin-dependent kinase 99.6 1.2E-15 4.1E-20 141.0 4.3 86 553-639 12-103 (136)
110 3d9h_A CDNA FLJ77766, highly s 99.6 1.3E-15 4.4E-20 159.8 5.0 127 512-639 71-215 (285)
111 3lvq_E ARF-GAP with SH3 domain 99.6 3.8E-15 1.3E-19 169.0 9.0 88 552-639 170-265 (497)
112 4g8k_A 2-5A-dependent ribonucl 99.6 1.6E-15 5.5E-20 163.1 5.5 114 521-639 192-326 (337)
113 3b7b_A Euchromatic histone-lys 99.6 2.3E-15 8E-20 152.9 6.2 128 512-639 23-169 (237)
114 2y1l_E Darpin-8.4; hydrolase-i 99.6 5.6E-15 1.9E-19 141.9 8.6 98 542-639 33-138 (169)
115 3ehr_A Osteoclast-stimulating 99.6 3.2E-16 1.1E-20 157.9 -0.2 87 553-639 106-198 (222)
116 1ihb_A P18-INK4C(INK6), cyclin 99.6 4.6E-15 1.6E-19 141.1 7.9 98 542-639 24-128 (162)
117 3utm_A Tankyrase-1; tankyrase, 99.5 2.4E-15 8.3E-20 162.0 6.3 129 511-639 135-305 (351)
118 3twr_A Tankyrase-2; ankyrin re 99.5 6.6E-15 2.3E-19 140.6 8.6 87 553-639 42-133 (165)
119 2dzn_A Probable 26S proteasome 99.5 2.4E-15 8.1E-20 151.8 5.7 128 512-639 14-166 (228)
120 1wdy_A 2-5A-dependent ribonucl 99.5 3.1E-15 1.1E-19 155.9 6.6 112 528-639 145-278 (285)
121 1sw6_A Regulatory protein SWI6 99.5 5.4E-16 1.8E-20 166.2 0.6 119 521-639 120-308 (327)
122 2qcs_B CAMP-dependent protein 99.5 4.1E-14 1.4E-18 148.7 15.0 132 366-501 35-166 (291)
123 4hbd_A KN motif and ankyrin re 99.5 2.1E-15 7.2E-20 157.4 4.7 117 523-639 103-242 (276)
124 3kea_A K1L; tropism, ANK repea 99.5 5.1E-16 1.7E-20 162.9 -0.2 132 507-639 69-220 (285)
125 3f6q_A Integrin-linked protein 99.5 8.9E-15 3E-19 141.9 8.5 87 553-639 39-130 (179)
126 3eu9_A Huntingtin-interacting 99.5 2.3E-15 7.9E-20 152.7 4.6 126 514-639 90-235 (240)
127 3ljn_A Hypothetical protein; a 99.5 1.5E-15 5E-20 165.3 3.0 117 523-639 130-269 (364)
128 3eff_K Voltage-gated potassium 99.5 2.3E-14 7.9E-19 132.3 10.6 91 198-304 8-98 (139)
129 3of1_A CAMP-dependent protein 99.5 1.5E-14 5.2E-19 147.9 10.0 129 369-501 6-134 (246)
130 2qcs_B CAMP-dependent protein 99.5 5.5E-14 1.9E-18 147.8 14.4 128 368-495 155-284 (291)
131 3tnp_B CAMP-dependent protein 99.5 1.8E-14 6E-19 159.1 10.6 135 367-501 264-405 (416)
132 3aaa_C Myotrophin, protein V-1 99.5 8.8E-15 3E-19 132.4 6.6 75 553-627 40-119 (123)
133 2vge_A RELA-associated inhibit 99.5 6.7E-15 2.3E-19 149.0 6.3 87 553-639 21-112 (229)
134 3t8k_A Uncharacterized protein 99.5 6.2E-15 2.1E-19 144.0 5.8 88 552-639 37-146 (186)
135 3of1_A CAMP-dependent protein 99.5 4.8E-14 1.6E-18 144.1 12.6 118 367-487 122-239 (246)
136 3la7_A Global nitrogen regulat 99.5 7.3E-14 2.5E-18 142.8 13.7 138 383-520 30-173 (243)
137 4din_B CAMP-dependent protein 99.5 4E-14 1.4E-18 154.6 12.5 133 365-501 125-257 (381)
138 2pnn_A Transient receptor pote 99.5 2.9E-15 9.9E-20 155.9 2.9 114 526-639 49-218 (273)
139 3deo_A Signal recognition part 99.5 8.7E-15 3E-19 142.6 6.1 87 552-639 43-135 (183)
140 4din_B CAMP-dependent protein 99.5 4.3E-14 1.5E-18 154.4 12.2 131 367-497 245-377 (381)
141 2fo1_E LIN-12 protein; beta-ba 99.5 4E-15 1.4E-19 162.5 3.1 128 512-639 178-338 (373)
142 1n0r_A 4ANK, 4 ankyrin repeats 99.5 2.4E-14 8.1E-19 129.6 7.6 87 553-639 2-93 (126)
143 1s70_B 130 kDa myosin-binding 99.5 1.8E-14 6.2E-19 151.8 7.7 126 514-639 120-290 (299)
144 1o7f_A CAMP-dependent RAP1 gua 99.5 1.3E-14 4.4E-19 163.6 6.8 144 354-498 26-172 (469)
145 3ui2_A Signal recognition part 99.5 1.5E-14 5.1E-19 148.0 6.6 91 548-639 40-136 (244)
146 2b0o_E UPLC1; arfgap, structur 99.5 1.3E-14 4.5E-19 153.2 6.3 88 552-639 189-284 (301)
147 3ehr_A Osteoclast-stimulating 99.5 1.6E-14 5.5E-19 145.3 6.6 87 553-639 73-165 (222)
148 2bgc_A PRFA; bacterial infecti 99.5 1.3E-13 4.5E-18 140.3 13.1 140 380-520 3-148 (238)
149 4g8k_A 2-5A-dependent ribonucl 99.5 8.8E-15 3E-19 157.3 4.3 117 523-639 160-298 (337)
150 1bi7_B P16INK4A, MTS1, multipl 99.5 1.1E-14 3.7E-19 137.9 4.4 86 553-639 12-103 (156)
151 1bd8_A P19INK4D CDK4/6 inhibit 99.5 3.6E-14 1.2E-18 134.0 7.5 86 553-639 36-125 (156)
152 3rvy_A ION transport protein; 99.5 5.2E-14 1.8E-18 147.3 9.1 203 61-303 31-243 (285)
153 3jue_A Arfgap with coiled-coil 99.5 3.9E-14 1.3E-18 153.2 8.2 109 511-639 211-326 (368)
154 1wdy_A 2-5A-dependent ribonucl 99.5 2.3E-14 7.9E-19 149.3 5.9 119 521-639 95-245 (285)
155 3deo_A Signal recognition part 99.5 4.3E-14 1.5E-18 137.7 7.1 73 553-625 76-154 (183)
156 1sw6_A Regulatory protein SWI6 99.5 8.5E-15 2.9E-19 156.8 2.0 116 510-625 141-327 (327)
157 3ui2_A Signal recognition part 99.5 3.9E-14 1.3E-18 144.9 6.4 107 511-639 56-185 (244)
158 3eu9_A Huntingtin-interacting 99.4 3.4E-14 1.2E-18 144.1 4.8 130 510-639 19-168 (240)
159 2k1e_A Water soluble analogue 99.4 3.5E-14 1.2E-18 123.4 3.8 91 198-304 8-98 (103)
160 3utm_A Tankyrase-1; tankyrase, 99.4 2.2E-13 7.7E-18 146.5 10.0 87 553-639 58-149 (351)
161 2q67_A Potassium channel prote 99.4 1.4E-12 4.9E-17 115.2 11.6 56 246-301 49-104 (114)
162 1o7f_A CAMP-dependent RAP1 gua 99.4 7.6E-13 2.6E-17 149.0 11.9 124 365-491 332-457 (469)
163 3b02_A Transcriptional regulat 99.4 1.2E-12 4.2E-17 128.7 11.0 118 396-520 2-120 (195)
164 4f7z_A RAP guanine nucleotide 99.4 1.2E-12 4.1E-17 160.8 13.2 135 351-487 24-161 (999)
165 3ouf_A Potassium channel prote 99.4 4.1E-12 1.4E-16 108.7 11.2 81 199-301 7-87 (97)
166 3ldc_A Calcium-gated potassium 99.3 2.5E-12 8.5E-17 106.4 8.7 54 246-299 28-81 (82)
167 3jue_A Arfgap with coiled-coil 99.3 1.1E-12 3.8E-17 141.7 7.1 87 553-639 199-293 (368)
168 2l6b_A NR1C; ankyrin, consensu 99.3 1.8E-13 6E-18 122.1 0.3 92 527-618 5-112 (115)
169 3cf6_E RAP guanine nucleotide 99.3 5.8E-12 2E-16 146.8 12.6 135 349-487 12-148 (694)
170 3lvq_E ARF-GAP with SH3 domain 99.3 1.6E-12 5.3E-17 147.4 7.4 85 555-639 134-232 (497)
171 1dcq_A PYK2-associated protein 99.3 2.4E-12 8.3E-17 134.1 7.3 85 555-639 132-230 (278)
172 1n0q_A 3ANK, 3 ankyrin repeats 99.3 3.1E-12 1.1E-16 109.3 6.5 60 580-639 1-60 (93)
173 2zcw_A TTHA1359, transcription 99.3 4.4E-12 1.5E-16 125.4 7.7 124 389-520 1-127 (202)
174 2b0o_E UPLC1; arfgap, structur 99.3 2.7E-12 9.2E-17 135.4 6.3 86 554-639 152-251 (301)
175 3pjs_K KCSA, voltage-gated pot 99.2 2.1E-14 7.3E-19 136.5 -11.8 60 246-305 67-126 (166)
176 4f7z_A RAP guanine nucleotide 99.2 5.8E-11 2E-15 145.9 14.0 112 367-481 334-447 (999)
177 2aja_A Ankyrin repeat family p 99.2 5.6E-14 1.9E-18 152.5 -12.0 109 530-639 91-224 (376)
178 2zgd_A 3 repeat synthetic anky 99.1 3.7E-11 1.3E-15 106.1 5.6 66 574-639 17-82 (110)
179 1xl4_A Inward rectifier potass 99.1 2.5E-10 8.6E-15 118.5 8.7 79 205-299 57-135 (301)
180 3um7_A Potassium channel subfa 99.0 7.5E-10 2.6E-14 114.1 10.9 57 246-302 115-171 (309)
181 1p7b_A Integral membrane chann 99.0 5.2E-10 1.8E-14 117.2 7.2 55 246-300 96-150 (333)
182 2qks_A KIR3.1-prokaryotic KIR 98.9 1.2E-09 4.3E-14 114.0 8.6 55 246-300 78-132 (321)
183 2aja_A Ankyrin repeat family p 98.9 1E-10 3.4E-15 126.9 -1.5 86 553-639 92-188 (376)
184 3um7_A Potassium channel subfa 98.8 3.6E-09 1.2E-13 109.1 7.8 60 247-306 225-290 (309)
185 4gx0_A TRKA domain protein; me 98.8 8.4E-09 2.9E-13 118.5 10.8 87 197-300 19-106 (565)
186 4dxw_A Navrh, ION transport pr 98.8 1.3E-08 4.4E-13 102.5 9.7 202 60-297 12-221 (229)
187 3ukm_A Potassium channel subfa 98.8 2.7E-08 9.4E-13 100.9 11.2 56 246-301 93-148 (280)
188 3sya_A G protein-activated inw 98.8 5.9E-08 2E-12 101.3 13.5 90 205-301 53-148 (340)
189 3ukm_A Potassium channel subfa 98.7 1.6E-08 5.6E-13 102.5 8.7 56 247-302 202-264 (280)
190 3spc_A Inward-rectifier K+ cha 98.6 1.9E-07 6.4E-12 97.6 11.0 89 204-299 54-149 (343)
191 2kyh_A KVAP, voltage-gated pot 98.4 2.6E-07 9E-12 85.0 6.2 76 61-151 22-99 (147)
192 1ors_C Potassium channel; volt 98.3 4E-07 1.4E-11 82.5 5.8 77 60-151 6-84 (132)
193 1lnq_A MTHK channels, potassiu 98.3 3.4E-08 1.2E-12 105.6 -1.9 55 247-301 46-100 (336)
194 2dnf_A Doublecortin domain-con 97.3 0.00096 3.3E-08 57.3 8.5 72 698-775 11-88 (108)
195 1mg4_A Doublecortin, doublecor 87.5 1.7 5.8E-05 37.2 7.5 69 700-774 14-92 (113)
196 2eel_A Cell death activator CI 85.1 1.8 6.1E-05 35.3 6.0 54 725-778 25-82 (91)
197 3kg2_A Glutamate receptor 2; I 81.7 2.6 9E-05 49.8 8.5 56 245-301 562-617 (823)
198 1f2r_I Inhibitor of caspase-ac 75.0 5 0.00017 33.2 5.5 56 722-778 31-93 (100)
199 1d4b_A CIDE B, human cell deat 65.6 2.6 8.7E-05 36.2 1.8 50 723-772 49-102 (122)
200 1ibx_B Chimera of IGG binding 54.4 9.5 0.00033 33.6 3.5 52 725-777 79-137 (145)
201 3fjs_A Uncharacterized protein 54.1 41 0.0014 28.3 7.7 67 393-469 38-104 (114)
202 4atu_I Neuronal migration prot 49.5 3.5 0.00012 43.3 0.0 69 700-774 191-266 (373)
203 3rns_A Cupin 2 conserved barre 49.2 53 0.0018 31.6 8.6 70 392-471 38-107 (227)
204 2ozj_A Cupin 2, conserved barr 48.7 41 0.0014 28.0 6.8 64 397-470 44-107 (114)
205 1yhf_A Hypothetical protein SP 47.1 83 0.0028 26.0 8.6 68 393-470 42-109 (115)
206 3lwc_A Uncharacterized protein 46.8 33 0.0011 29.3 5.9 65 396-470 45-109 (119)
207 3es1_A Cupin 2, conserved barr 44.4 24 0.00083 32.5 4.9 67 396-470 84-150 (172)
208 1zvf_A 3-hydroxyanthranilate 3 44.3 39 0.0013 31.0 6.1 59 409-472 52-113 (176)
209 1orq_C Potassium channel; volt 43.5 46 0.0016 31.9 7.1 19 167-185 99-117 (223)
210 2pfw_A Cupin 2, conserved barr 42.0 82 0.0028 26.0 7.8 68 393-470 36-103 (116)
211 3ibm_A Cupin 2, conserved barr 41.0 1.1E+02 0.0039 27.6 9.0 86 395-488 60-156 (167)
212 1dgw_A Canavalin; duplicated s 39.5 32 0.0011 31.9 5.0 52 393-445 43-94 (178)
213 1yfu_A 3-hydroxyanthranilate-3 37.6 53 0.0018 30.1 5.8 35 410-445 54-88 (174)
214 3jzv_A Uncharacterized protein 36.6 86 0.003 28.5 7.4 87 395-489 57-153 (166)
215 1v70_A Probable antibiotics sy 31.8 1.1E+02 0.0038 24.3 6.8 69 394-470 31-100 (105)
216 3kgz_A Cupin 2 conserved barre 31.4 1E+02 0.0035 27.6 6.9 45 395-444 48-92 (156)
217 2bnm_A Epoxidase; oxidoreducta 31.2 81 0.0028 29.2 6.5 68 397-470 123-196 (198)
218 1fi2_A Oxalate oxidase, germin 31.2 75 0.0026 29.8 6.3 53 393-445 74-130 (201)
219 3h8u_A Uncharacterized conserv 30.8 1E+02 0.0035 25.9 6.6 70 393-469 41-111 (125)
220 3rvy_A ION transport protein; 30.4 34 0.0012 34.2 3.9 15 169-183 115-129 (285)
221 4atu_I Neuronal migration prot 28.9 1E+02 0.0036 32.1 7.2 70 699-774 63-142 (373)
222 2gu9_A Tetracenomycin polyketi 28.7 1.1E+02 0.0038 24.8 6.4 47 394-445 24-73 (113)
223 4e2g_A Cupin 2 conserved barre 28.2 72 0.0025 26.9 5.1 78 393-480 43-124 (126)
224 3c3v_A Arachin ARAH3 isoform; 27.9 68 0.0023 35.1 5.8 59 386-444 367-427 (510)
225 2r9r_B Paddle chimera voltage 27.7 33 0.0011 37.9 3.3 18 167-184 305-322 (514)
226 1o5u_A Novel thermotoga mariti 27.3 95 0.0032 25.5 5.4 44 395-445 35-79 (101)
227 3d0j_A Uncharacterized protein 26.6 2.2E+02 0.0075 25.0 7.7 63 406-473 45-110 (140)
228 1fxz_A Glycinin G1; proglycini 25.8 75 0.0026 34.5 5.7 53 392-444 339-393 (476)
229 2ih3_C Voltage-gated potassium 25.2 1.2E+02 0.0042 25.8 6.0 14 208-221 39-52 (122)
230 2i45_A Hypothetical protein; n 25.2 81 0.0028 25.7 4.7 68 398-475 35-103 (107)
231 2d5f_A Glycinin A3B4 subunit; 25.0 84 0.0029 34.3 5.9 60 386-445 362-423 (493)
232 1j58_A YVRK protein; cupin, de 24.1 1.8E+02 0.0063 30.2 8.4 73 394-470 260-334 (385)
233 3rns_A Cupin 2 conserved barre 23.8 1.5E+02 0.005 28.4 7.0 67 393-469 155-222 (227)
234 3fz3_A Prunin; TREE NUT allerg 22.7 1E+02 0.0035 33.7 5.9 61 385-445 388-450 (531)
235 2vqa_A SLL1358 protein, MNCA; 22.5 1.1E+02 0.0038 31.6 6.2 50 395-445 56-107 (361)
236 1j58_A YVRK protein; cupin, de 22.4 95 0.0032 32.5 5.7 51 394-445 82-133 (385)
237 2fqp_A Hypothetical protein BP 22.2 57 0.0019 26.3 3.1 49 395-446 22-71 (97)
238 4b29_A Dimethylsulfoniopropion 21.8 90 0.0031 29.8 4.6 43 398-444 139-181 (217)
239 2vqa_A SLL1358 protein, MNCA; 21.6 1.3E+02 0.0043 31.1 6.4 52 393-445 236-289 (361)
240 3es4_A Uncharacterized protein 21.6 95 0.0032 26.4 4.3 44 398-446 49-92 (116)
241 4i4a_A Similar to unknown prot 21.6 3.3E+02 0.011 22.6 8.3 78 396-481 39-118 (128)
242 2cav_A Protein (canavalin); vi 21.5 86 0.0029 33.7 5.1 53 392-445 87-139 (445)
243 3i7d_A Sugar phosphate isomera 21.4 1.3E+02 0.0043 27.1 5.6 46 395-445 47-94 (163)
244 3pjz_A Potassium uptake protei 21.4 1.5E+02 0.0053 32.2 7.1 45 242-286 302-348 (494)
245 3d82_A Cupin 2, conserved barr 21.3 2.3E+02 0.0079 22.3 6.8 50 412-471 51-100 (102)
246 1sfn_A Conserved hypothetical 21.3 1.9E+02 0.0066 27.9 7.3 70 392-469 166-236 (246)
247 1vj2_A Novel manganese-contain 21.1 1.5E+02 0.0052 25.0 5.8 46 395-445 52-97 (126)
248 2pyt_A Ethanolamine utilizatio 20.6 99 0.0034 26.9 4.5 45 395-446 61-105 (133)
249 2qnk_A 3-hydroxyanthranilate 3 20.4 1.4E+02 0.0047 29.7 5.7 59 408-472 48-106 (286)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=1.1e-38 Score=346.85 Aligned_cols=347 Identities=17% Similarity=0.204 Sum_probs=141.9
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHHHhhhhhcccCCC--ccchhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHH
Q 003951 52 ISPFNPRYRAWEMWLVVLVVYSAWICPFEFAFLTYKK--DALLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKI 129 (784)
Q Consensus 52 i~P~s~~~~~W~~~~~~~~~~~~~~~p~~~~F~~~~~--~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i 129 (784)
+.|+|+. ++.+++++++.+++++..+.......+ ..+..++.++.++|++|+++++..+ +. +
T Consensus 3 ~~p~s~~---f~~~~~~~i~ls~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~-------~--- 66 (355)
T 3beh_A 3 VLPFLRI---YAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR---RA-------G--- 66 (355)
T ss_dssp ----CCS---SSSHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CS-------C---
T ss_pred CCchhHH---HHHHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cc-------c---
Confidence 4677774 467777777777777777643221111 2234556666677899999998432 11 0
Q ss_pred HHHHh-hhhhHHHhhhc-cchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 003951 130 AIRYM-STWFIFDVCST-APLQFLALLLTNNISELTFRLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLVAVTLF 207 (784)
Q Consensus 130 ~~~Yl-~~~f~~Dlis~-lP~~~i~~~~~~~~~~~~~~il~llrllRl~r~~~~~~~l~~~~~~~~~~~~~~~li~~~l~ 207 (784)
..|. +.|.++|++++ +|+..+. .. .. ...+++|++|++|+.|..+.++.+...... ....+..+++.+++
T Consensus 67 -~~~~~~~~~i~Dl~~i~~p~~~~~--~~-~~--~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~--~~~~l~~~~~~~~~ 138 (355)
T 3beh_A 67 -VVRDRTPKIAIDVLAVLVPLAAFL--LD-GS--PDWSLYCAVWLLKPLRDSTFFPVLGRVLAN--EARNLIGVTTLFGV 138 (355)
T ss_dssp -SSCCCHHHHHHHHHHHHHHHHHHH--SC-CS--GGGGGGGGGGGSHHHHTCSSHHHHHHHHHH--THHHHHHHHHHHHH
T ss_pred -ceeccCcchHHHHHHHHHHHHHHH--hc-cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 1233 56789999998 6885432 11 11 123455566666665554444444433221 12345666677778
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHH
Q 003951 208 AVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGL 287 (784)
Q Consensus 208 ~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~ 287 (784)
++|++||++|.++... +.+.+..|.+|+||+++||||+||||++|.|+.|+++++++|++|+++
T Consensus 139 ~~~~~a~~~~~~e~~~----------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~ 202 (355)
T 3beh_A 139 VLFAVALAAYVIERDI----------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGI 202 (355)
T ss_dssp HHHHHHHHHHHHHTTT----------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCC----------------CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHH
Confidence 8899999999987421 112345699999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCCcHHHHHhcCCHHHHHHHHHHh
Q 003951 288 TSYIIGNMTNLVVHWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLSHICLKFKTEGLKQQETLVGLPKAIRSSIAHYL 367 (784)
Q Consensus 288 ~a~~ig~i~~ii~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~~ 367 (784)
+++++|.+++.+.+..++ ++++ -
T Consensus 203 ~~~~~~~i~~~~~~~~~~----------------------------~~~~-----------------------------~ 225 (355)
T 3beh_A 203 FGLWAGILATGFYQEVRR----------------------------GDFV-----------------------------R 225 (355)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------------------HHHH-----------------------------H
T ss_pred HHHHHHHHHHHHHHHHHH----------------------------Hhhc-----------------------------c
Confidence 999999998766432110 0000 0
Q ss_pred hhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehh
Q 003951 368 FFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEI 447 (784)
Q Consensus 368 ~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~ 447 (784)
..+.++++++|++++++++++++..++.+.|+|||.|+++||.++++|+|.+|.|+++... ...+++|++|||.
T Consensus 226 ~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~fGe~ 299 (355)
T 3beh_A 226 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGEM 299 (355)
T ss_dssp HHC-----------------------------------------------------------------------------
T ss_pred cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC------eeEECCCCEEeeh
Confidence 2467888999999999999999999999999999999999999999999999999998432 2578999999999
Q ss_pred hhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhc
Q 003951 448 GVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQE 501 (784)
Q Consensus 448 ~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~ 501 (784)
+++.+.|++++++|.++|+++.+++++|.++++++|++.+.+.+.+.+|+++..
T Consensus 300 ~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~~~ 353 (355)
T 3beh_A 300 ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAAA 353 (355)
T ss_dssp ------------------------------------------------------
T ss_pred HHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999988887643
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=1.5e-30 Score=258.75 Aligned_cols=195 Identities=22% Similarity=0.397 Sum_probs=183.9
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCCcHHHHHhcCCHHHHHHHHHHhhhhhhcccccccc
Q 003951 301 HWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLSHICLKFKTEGLKQQETLVGLPKAIRSSIAHYLFFPIVQNVYLFQG 380 (784)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~lf~~ 380 (784)
++++++.+|+++++.+++||+.+++|+.|+.||++|+++.|++++.+++++++.||+.||.+|..+++.++++++++|++
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~ 81 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVG 81 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhc
Confidence 45678899999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEE
Q 003951 381 VSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVR 460 (784)
Q Consensus 381 ~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~ 460 (784)
++++++..|+..++.+.|+|||+|+.+||.++.+|||.+|.|+++. .+|+ ++..+++|++|||.+++.+.+++++++
T Consensus 82 l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~ 158 (198)
T 2ptm_A 82 ADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--IATSLSDGSYFGEICLLTRERRVASVK 158 (198)
T ss_dssp CCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--EEEEECTTCEESCHHHHHSSCCSSEEE
T ss_pred CCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--EEEEecCCCEechHHHcCCCccceEEE
Confidence 9999999999999999999999999999999999999999999985 4554 789999999999999999999999999
Q ss_pred EccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 003951 461 TTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLK 498 (784)
Q Consensus 461 a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~ 498 (784)
|.++|+++.|++++|.++++++|++...+++.+.+|++
T Consensus 159 a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 159 CETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp ESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred EeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888877654
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=9e-30 Score=253.89 Aligned_cols=197 Identities=17% Similarity=0.313 Sum_probs=184.9
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCCcHHHHHhcCCHHHHHHHHHHhhhhhhcccccccc
Q 003951 301 HWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLSHICLKFKTEGLKQQETLVGLPKAIRSSIAHYLFFPIVQNVYLFQG 380 (784)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~lf~~ 380 (784)
++++++.+|++++..+++||+.+++|+.|+.||++|+++.|++++.+++++++.||+.||.+|..+++.++++++|+|.+
T Consensus 3 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~ 82 (202)
T 3bpz_A 3 AMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFAN 82 (202)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhc
Confidence 46788899999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEE
Q 003951 381 VSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVR 460 (784)
Q Consensus 381 ~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~ 460 (784)
++++++..|+..++.+.|+|||+|+.+||.++.+|||.+|.|+++. .+|++. .+++|++|||.+++.+.+++++++
T Consensus 83 l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~~---~l~~G~~fGe~~~~~~~~~~~~v~ 158 (202)
T 3bpz_A 83 ADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKEM---KLSDGSYFGEICLLTRGRRTASVR 158 (202)
T ss_dssp SCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCCE---EEETTCEECHHHHHHCSBCSSEEE
T ss_pred CCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeEE---EEcCCCEeccHHHhcCCCcccEEE
Confidence 9999999999999999999999999999999999999999999974 456553 579999999999999999999999
Q ss_pred EccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhc
Q 003951 461 TTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQE 501 (784)
Q Consensus 461 a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~ 501 (784)
|.++|+++.|++++|.++++.+|++...+.+.+.+|+....
T Consensus 159 a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~~~ 199 (202)
T 3bpz_A 159 ADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIG 199 (202)
T ss_dssp ESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHHC-
T ss_pred EeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999987643
No 4
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=4.2e-30 Score=258.33 Aligned_cols=199 Identities=20% Similarity=0.300 Sum_probs=178.9
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh-hcCCcHHHHHhcCCHHHHHHHHHHhhhhhhcc
Q 003951 296 TNLVVHWTSRTRNFRETVRAVSEFATRNHLPPHIHDQMLSHICLKFK-TEGLKQQETLVGLPKAIRSSIAHYLFFPIVQN 374 (784)
Q Consensus 296 ~~ii~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~v~~~~~~~~~-~~~~~~~~~l~~Lp~~Lr~~i~~~~~~~~l~~ 374 (784)
++++.+.++++++|++++..+++||+.+++|+.|+.||++|++|.|+ +++.+++++++.||++||.+|..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 35678889999999999999999999999999999999999999996 577888999999999999999999998887 7
Q ss_pred ccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCC-
Q 003951 375 VYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYR- 453 (784)
Q Consensus 375 ~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~- 453 (784)
+|+|++++++++..|+..++.+.|+|||+|+.+||.++.+|||.+|.|+++. +| .++..+++|++|||.+++.+.
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~--~~~~~l~~G~~fGe~~~~~~~~ 155 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN--TVLAILGKGDLIGSDSLTKEQV 155 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS--CEEEEECTTCEEECSCCSSSSC
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC--eEEEEecCCCCcCcHHhccCCC
Confidence 9999999999999999999999999999999999999999999999999984 33 678999999999999999998
Q ss_pred -CceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHh
Q 003951 454 -PQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKD 499 (784)
Q Consensus 454 -~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 499 (784)
+++++++|.++|+++.|++++|.++++.+|++...+++.+.+++..
T Consensus 156 ~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 202 (212)
T 3ukn_A 156 IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202 (212)
T ss_dssp CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEE
T ss_pred CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999888754
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.93 E-value=2e-25 Score=225.62 Aligned_cols=210 Identities=20% Similarity=0.272 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh--cccCCCccchhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhhhhh
Q 003951 61 AWEMWLVVLVVYSAWICPFEFA--FLTYKKDALLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMSTWF 138 (784)
Q Consensus 61 ~W~~~~~~~~~~~~~~~p~~~~--F~~~~~~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~~~f 138 (784)
.|+.+++++++++++.++++.. +..+....+..+|.+++++|.+|+++|+.++. + .++|+++ +
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~----------~----~~~y~~~-~ 73 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSG----------D----PAGYVKK-T 73 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS----------C----HHHHHHH-H
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHcccc----------c----HHHHHHH-h
Confidence 5999999999999998888754 33444567889999999999999999998761 2 3688887 8
Q ss_pred HHHhhhccchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003951 139 IFDVCSTAPLQFLALLLTNNISELTFRLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLVAVTLFAVHCAGCFNYL 218 (784)
Q Consensus 139 ~~Dlis~lP~~~i~~~~~~~~~~~~~~il~llrllRl~r~~~~~~~l~~~~~~~~~~~~~~~li~~~l~~~h~~aci~y~ 218 (784)
++|+++++|++..............++++|++|++|+.|+.+...+..+.........++..++..++.++|+.||++|.
T Consensus 74 iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (223)
T 1orq_C 74 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYI 153 (223)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997654311100001124444555555544443322222222211111234566677777888999999998
Q ss_pred HhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003951 219 IADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNL 298 (784)
Q Consensus 219 i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~i 298 (784)
++...+ ++ .+.+|.+|+||+++||||+||||++|.|+.|+++++++|++|++++++++|.+++.
T Consensus 154 ~e~~~~---~~-------------~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~ 217 (223)
T 1orq_C 154 VEYPDP---NS-------------SIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217 (223)
T ss_dssp TTSSST---TC-------------SCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCc---CC-------------CcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 864211 11 12368999999999999999999999999999999999999999999999999988
Q ss_pred HHH
Q 003951 299 VVH 301 (784)
Q Consensus 299 i~~ 301 (784)
+.+
T Consensus 218 ~~~ 220 (223)
T 1orq_C 218 FQK 220 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 6
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.87 E-value=1.8e-22 Score=227.00 Aligned_cols=231 Identities=14% Similarity=0.213 Sum_probs=156.5
Q ss_pred hhccCCcEeCCC-ChhHHHHHHHHHHHHHHHHHHHhhhhh--cccC--------------------------CCccchhH
Q 003951 44 ATKLRRYIISPF-NPRYRAWEMWLVVLVVYSAWICPFEFA--FLTY--------------------------KKDALLII 94 (784)
Q Consensus 44 ~~~~~~~ii~P~-s~~~~~W~~~~~~~~~~~~~~~p~~~~--F~~~--------------------------~~~~~~~~ 94 (784)
+.+++..+-+|. |...++|+.+++++++.++++..++.. +... ....+.++
T Consensus 165 r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 244 (514)
T 2r9r_B 165 QRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIV 244 (514)
T ss_dssp HHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhHHHHH
Confidence 445555556786 567889999999999999988877653 2111 12457789
Q ss_pred HHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhhh-hhHHHhhhccchHHHHHHHhcCCch----hHHHHHHH
Q 003951 95 DNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMST-WFIFDVCSTAPLQFLALLLTNNISE----LTFRLLNM 169 (784)
Q Consensus 95 ~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~~~----~~~~il~l 169 (784)
|.++.++|.+|+++++.++ + + .++|+++ |+++|+++++|+.+.........+. ..+.++|+
T Consensus 245 e~i~~~iFtiE~ilR~~~~---~-------~----k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrv 310 (514)
T 2r9r_B 245 ETLCIIWFSFEFLVRFFAC---P-------S----KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQI 310 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHS---S-------C----SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC---C-------c----HHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHH
Confidence 9999999999999999765 1 1 1478865 7899999999996543322111111 01344555
Q ss_pred HHHHHHHHHHHHHHHh---hhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHH
Q 003951 170 LRLWRLRRVSSLFARL---EKDIR-FNYFWTRCTKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWN 245 (784)
Q Consensus 170 lrllRl~r~~~~~~~l---~~~~~-~~~~~~~~~~li~~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~ 245 (784)
+|++|++|+.++.+.. +.... +......+..+++++++.++++|+++|+++... . .+.+.
T Consensus 311 lRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~---~-------------~~~F~ 374 (514)
T 2r9r_B 311 FRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADE---R-------------DSQFP 374 (514)
T ss_dssp HHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---T-------------TCSCS
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccC---C-------------Ccccc
Confidence 5555555554443322 11111 111122344445555566777888877765211 1 12234
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTS 304 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~ 304 (784)
.|..|+||+++||||+||||+.|.++.+++|++++|++|++++++++|.+.+.+.....
T Consensus 375 s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 375 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred chhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999887766544
No 7
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.86 E-value=1.2e-22 Score=195.80 Aligned_cols=133 Identities=23% Similarity=0.258 Sum_probs=115.5
Q ss_pred CCChhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccC
Q 003951 509 TTDPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STAC 570 (784)
Q Consensus 509 ~~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~ 570 (784)
..+....++.|+ |+|+|..|.+|+||+|++.. .++..+.+++.. |.||||+|| .++.+ |+++
T Consensus 13 ~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 92 (169)
T 4gpm_A 13 ENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92 (169)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 456667777777 99999999999999997432 346677777766 899999999 67777 9999
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCCCC
Q 003951 571 PVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENRTP 641 (784)
Q Consensus 571 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~~~ 641 (784)
|+|+|.+|.+|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+..|+.+++++|+++||+.+
T Consensus 93 gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 93 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999843
No 8
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=1.6e-19 Score=171.99 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=125.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEe
Q 003951 348 QQETLVGLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHY 427 (784)
Q Consensus 348 ~~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~ 427 (784)
.+++++.||+.+|.++..+++.++++++++|++++++.+..++..++.+.|++|+.|+.+|+.++.+|+|.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ecCceeEEEEecCCCeeehhhhhcC--CCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHH
Q 003951 428 VDGQDKVLGKAVAGDAFGEIGVLYY--RPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNL 493 (784)
Q Consensus 428 ~~g~~~~~~~l~~G~~fGe~~~l~~--~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l 493 (784)
.+.++..+.+|++||+.+++.+ .+++++++|.++|+++.|++++|.++++++|++...+++.+
T Consensus 84 ---~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 84 ---DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp ---TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred ---CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999988 68999999999999999999999999999999988877665
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.77 E-value=4.7e-18 Score=166.63 Aligned_cols=155 Identities=17% Similarity=0.238 Sum_probs=136.9
Q ss_pred CcHHHHHhcCCHHH----HHHHHHHhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecE
Q 003951 346 LKQQETLVGLPKAI----RSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGA 421 (784)
Q Consensus 346 ~~~~~~l~~Lp~~L----r~~i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~ 421 (784)
..+.+..+.+++.+ +.+...+...++++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.
T Consensus 11 ~~~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~ 90 (187)
T 3gyd_A 11 HHENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGE 90 (187)
T ss_dssp CCHHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEE
T ss_pred cccceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCE
Confidence 34455566666655 45556666778999999999999999999999999999999999999999999999999999
Q ss_pred EEEE-EeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHH----HHHHHH
Q 003951 422 VDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVM----NNLFRK 496 (784)
Q Consensus 422 v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~----~~l~~~ 496 (784)
|+++ ...+|++.++..+.+|++||+.+++.+.+++++++|.++|+++.|++++|.++++++|++...++ +.+.+|
T Consensus 91 v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~r 170 (187)
T 3gyd_A 91 VNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTAR 170 (187)
T ss_dssp EEEEEEETTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 9999 55688899999999999999999999999999999999999999999999999999999998888 556666
Q ss_pred HHhh
Q 003951 497 LKDQ 500 (784)
Q Consensus 497 l~~~ 500 (784)
++..
T Consensus 171 l~~~ 174 (187)
T 3gyd_A 171 FRES 174 (187)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 10
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.76 E-value=4.3e-18 Score=158.55 Aligned_cols=131 Identities=17% Similarity=0.259 Sum_probs=117.8
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeE---EEEecCCCee
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKV---LGKAVAGDAF 444 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~---~~~l~~G~~f 444 (784)
.++++++++|++++++.++.++..++.+.|++|+.|+++|+.++.+|+|.+|.|+++ ...+|++.+ +..+.+|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 467899999999999999999999999999999999999999999999999999999 556788888 9999999999
Q ss_pred ehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHh
Q 003951 445 GEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKD 499 (784)
Q Consensus 445 Ge~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 499 (784)
|+.+++.+.+++++++|.++|+++.|++++|.++++++|++...+++.+.+++.+
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888754
No 11
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.76 E-value=8.5e-18 Score=157.84 Aligned_cols=135 Identities=16% Similarity=0.269 Sum_probs=127.2
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEI 447 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~ 447 (784)
.++++++++|.+++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 567899999999999999999999999999999999999999999999999999999 4567899999999999999999
Q ss_pred hhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccc
Q 003951 448 GVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESI 503 (784)
Q Consensus 448 ~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~ 503 (784)
+++.+.++.++++|.++|+++.|++++|.++++++|++...+++.+.+++......
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 139 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKTNDA 139 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998875543
No 12
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.74 E-value=2.3e-18 Score=147.92 Aligned_cols=87 Identities=31% Similarity=0.429 Sum_probs=82.7
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.||+|+|| .++.+ |+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 81 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 689999999 67777 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++||.
T Consensus 82 ~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 82 EVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999974
No 13
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.74 E-value=5.4e-19 Score=183.94 Aligned_cols=126 Identities=19% Similarity=0.057 Sum_probs=108.5
Q ss_pred hhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCC
Q 003951 514 IILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVN 575 (784)
Q Consensus 514 ~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~ 575 (784)
..+..++ |+++|..|.+|+||||+|.. .++..+.+++.. |.+|++.|+ .++.+ |+++|+++|
T Consensus 67 ~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n 146 (269)
T 4b93_B 67 KRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146 (269)
T ss_dssp --------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC
Confidence 3445555 89999999999999998432 346667777665 899999999 66666 899999999
Q ss_pred CCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 576 SKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 576 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.+|..|+||||+||..|+.++|++|+++|||+|.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad 210 (269)
T 4b93_B 147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS 210 (269)
T ss_dssp CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988
No 14
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.74 E-value=4.1e-19 Score=164.47 Aligned_cols=118 Identities=15% Similarity=0.054 Sum_probs=100.0
Q ss_pred CCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhhhcCcc----cccCCCCCCCCCCC-CccHH
Q 003951 522 GPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEASKDQD----STACPVDVNSKVED-GQTEL 585 (784)
Q Consensus 522 ~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~~~~~~----ll~~g~~~~~~d~~-g~T~L 585 (784)
.+.+..|..|+||||.|.. .+++.+.+++.. |.||+|+||.++.+ |+++|+++|.+|.. |.|||
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPATLTRPV 82 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTTSCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence 4667777778888776332 245556665544 77888888874444 89999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 586 NAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 586 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++||+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999974
No 15
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.74 E-value=3.5e-18 Score=159.45 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHH
Q 003951 206 LFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNL 285 (784)
Q Consensus 206 l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~ 285 (784)
++++-+.|+++|.++...+ .+.+..|.+|+||+++|+|||||||++|.|+.+++++++++++|+
T Consensus 60 ~~~i~~~a~~~~~~E~~~~----------------~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv 123 (155)
T 2a9h_A 60 VIVLLAGSYLAVLAERGAP----------------GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 123 (155)
T ss_dssp HHHHHHHHHHHHHHHTTSS----------------CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC----------------CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHH
Confidence 3344556777777764221 112345899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHhHhH
Q 003951 286 GLTSYIIGNMTNLVVHWTSRT 306 (784)
Q Consensus 286 ~~~a~~ig~i~~ii~~~~~~~ 306 (784)
+++++++|.+++.+.+..+++
T Consensus 124 ~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 124 TSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp HHHHHHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887655433
No 16
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.74 E-value=1.9e-18 Score=164.75 Aligned_cols=129 Identities=16% Similarity=0.064 Sum_probs=111.1
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC-------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCC
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD-------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVD 573 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~-------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~ 573 (784)
+....+..++ |++++..|..|+||+|.+.. .+++.+.+++.. |.||+|.|+ .++.+ |+++|++
T Consensus 16 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 95 (162)
T 1ihb_A 16 GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95 (162)
T ss_dssp TCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCSSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHhCCCCccccCccCccHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3444455555 78889999999999998654 346667777655 899999999 67777 8999999
Q ss_pred CCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 574 VNSKVEDGQTELNAANQRGHIEMVKVLLEGGRN-GNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 574 ~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|.+|.+|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++||+
T Consensus 96 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999999999999999999999999998 599999999999999999999999999999974
No 17
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.74 E-value=1.9e-17 Score=156.43 Aligned_cols=134 Identities=23% Similarity=0.303 Sum_probs=121.8
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEI 447 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~ 447 (784)
.++++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 467889999999999999999999999999999999999999999999999999999 4567888899999999999999
Q ss_pred hhhcCCC-ceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhcc
Q 003951 448 GVLYYRP-QPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQES 502 (784)
Q Consensus 448 ~~l~~~~-~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~ 502 (784)
+++.+.+ +.++++|.++|+++.|++++|.++++++|++...+++.+.+|+.....
T Consensus 91 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~~~~ 146 (154)
T 2z69_A 91 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRID 146 (154)
T ss_dssp GGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTCCSS
T ss_pred hhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence 9999988 999999999999999999999999999999999999999999876543
No 18
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.73 E-value=1e-17 Score=159.96 Aligned_cols=130 Identities=20% Similarity=0.346 Sum_probs=119.8
Q ss_pred HHHHHhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCC
Q 003951 362 SIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAG 441 (784)
Q Consensus 362 ~i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G 441 (784)
+.......++++++++|.+++++.+..|+..++.+.|++|++|+++|+.++.+|+|.+|.|+++...+|++.++..+.+|
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G 109 (161)
T 3idb_B 30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNR 109 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCC
Confidence 33445567899999999999999999999999999999999999999999999999999999998788999999999999
Q ss_pred CeeehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHH
Q 003951 442 DAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMN 491 (784)
Q Consensus 442 ~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~ 491 (784)
++||+.+++.+.+++++++|.++|+++.|++++|.++++++|...+.+++
T Consensus 110 ~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 159 (161)
T 3idb_B 110 GSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159 (161)
T ss_dssp CEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred CEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988765443
No 19
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.73 E-value=1.6e-17 Score=154.23 Aligned_cols=131 Identities=17% Similarity=0.236 Sum_probs=118.1
Q ss_pred cCCHHHHHHHHHHhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCcee
Q 003951 354 GLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDK 433 (784)
Q Consensus 354 ~Lp~~Lr~~i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~ 433 (784)
++|+.+|.+........+++++++|++++++.++.++..++.+.|.+|++|+++|+.++.+|+|.+|.|++.. +| .
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g--~ 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EG--V 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TT--E
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CC--E
Confidence 6888999998888999999999999999999999999999999999999999999999999999999999963 55 4
Q ss_pred EEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHH
Q 003951 434 VLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRI 488 (784)
Q Consensus 434 ~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~ 488 (784)
++..+.+|++||+.+++.+.+++++++|.++|+++.|++++|.++++++|...+.
T Consensus 83 ~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 KLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp EEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred EEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 7899999999999999999999999999999999999999999999999987654
No 20
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.72 E-value=1.6e-17 Score=163.73 Aligned_cols=136 Identities=13% Similarity=0.106 Sum_probs=126.0
Q ss_pred hhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeeh
Q 003951 368 FFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGE 446 (784)
Q Consensus 368 ~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe 446 (784)
...+++++++|.+++++.++.+...++.+.|++|+.|+.+||+++.+|+|.+|.|+++ ...+|++.++..+.+|++|||
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge 84 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSD 84 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEee
Confidence 3567788999999999999999999999999999999999999999999999999999 557899999999999999998
Q ss_pred h-hhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccc
Q 003951 447 I-GVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESI 503 (784)
Q Consensus 447 ~-~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~ 503 (784)
. +++.+.|++++++|.++|+++.|++++|.++++++|++...+.+.+.+++......
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 142 (194)
T 3dn7_A 85 YMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLR 142 (194)
T ss_dssp HHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 8 68889999999999999999999999999999999999999999888887764433
No 21
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.72 E-value=4.5e-17 Score=166.01 Aligned_cols=153 Identities=16% Similarity=0.242 Sum_probs=138.1
Q ss_pred hhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeeh
Q 003951 368 FFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGE 446 (784)
Q Consensus 368 ~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe 446 (784)
..++++++++|.+++++.++.+...++.+.|++|++|+.+|+.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~ 88 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGE 88 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECH
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEech
Confidence 4578899999999999999999999999999999999999999999999999999999 467899999999999999999
Q ss_pred hhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 447 IGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 447 ~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
.+++.+.+++++++|.++|+++.|++++|.++++++|++...+++.+.+++.................++..++
T Consensus 89 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L 162 (237)
T 3fx3_A 89 AVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLEQLKAQTGAQRVAEFL 162 (237)
T ss_dssp HHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred HHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888655544445555555555555
No 22
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.71 E-value=3.8e-18 Score=164.24 Aligned_cols=127 Identities=20% Similarity=0.170 Sum_probs=108.4
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCC
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPV 572 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~ 572 (784)
+....++.|+ |++++..|..|+||+|.|.. .+++.+.+++.. |.+|+|.|| .++.+ |+++|+
T Consensus 25 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 104 (169)
T 2y1l_E 25 GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104 (169)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3444555555 78899999999999997432 346667666655 889999999 67766 889999
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcC
Q 003951 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYE 637 (784)
Q Consensus 573 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~ 637 (784)
++|..|.+|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..|+.+++++|+++|
T Consensus 105 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999876
No 23
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.71 E-value=1e-16 Score=162.82 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=138.7
Q ss_pred hhhhhccccccccCCHHHHHHHHHc--CcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCee
Q 003951 368 FFPIVQNVYLFQGVSHDFLFQLVSD--MDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAF 444 (784)
Q Consensus 368 ~~~~l~~~~lf~~~s~~~l~~l~~~--~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~f 444 (784)
...+++++++|.+++++.++.++.. ++.+.|++||+|+.+||.++.+|+|.+|.|+++ ...+|++.++..+.+|++|
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~f 95 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI 95 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCee
Confidence 3567899999999999999999998 999999999999999999999999999999998 5678999999999999999
Q ss_pred ehhhhhcCCC-ceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 445 GEIGVLYYRP-QPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 445 Ge~~~l~~~~-~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
|+.+++.+.+ +.++++|.++|+++.|++++|.++++++|++...+++.+.+++.................++..++
T Consensus 96 G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L 172 (232)
T 1zyb_A 96 EPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFF 172 (232)
T ss_dssp CGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHHHHH
T ss_pred eehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 9999999988 899999999999999999999999999999999999999999988666655555566666666555
No 24
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.71 E-value=3.2e-17 Score=164.44 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=128.7
Q ss_pred hccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhh
Q 003951 372 VQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVL 450 (784)
Q Consensus 372 l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l 450 (784)
++++|+|.+++++.++.+...++.+.|++|+.|+.+|+.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 467899999999999999999999999999999999999999999999999999 4578999999999999999999999
Q ss_pred cCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 451 YYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 451 ~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
.+.+++++++|.++|+++.|++++|.++++++|++...+++.+.+++.................++..++
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl~~~L 150 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNRVAYAL 150 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877544333222233344444443
No 25
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.70 E-value=1.7e-17 Score=159.58 Aligned_cols=99 Identities=27% Similarity=0.366 Sum_probs=91.6
Q ss_pred Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 003951 541 SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDA 612 (784)
Q Consensus 541 ~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~ 612 (784)
.+++.|.+++.. |.||+|.|+ .++.+ +++.|+|++.+|.+|+||||+|+..|+.++|++|+++|||+|.+|.
T Consensus 22 ~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~ 101 (169)
T 4gpm_A 22 DLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 101 (169)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC
Confidence 346677777766 899999999 56655 9999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 613 KGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 613 ~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.|+||||+|+..|+.+++++|+++|++
T Consensus 102 ~G~TpLh~A~~~g~~~~v~~Ll~~gad 128 (169)
T 4gpm_A 102 DGRTPLHHAAENGHKEVVKLLISKGAD 128 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999987
No 26
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.70 E-value=1.2e-17 Score=159.93 Aligned_cols=125 Identities=14% Similarity=0.037 Sum_probs=95.3
Q ss_pred hhhhhhhc---cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCC
Q 003951 513 GIILHECI---GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVD 573 (784)
Q Consensus 513 ~~~l~~Ll---g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~ 573 (784)
...+..++ +.+++..+..|+||+|+|.. .+++.+.+++.. |.||+|+|| .++.+ |+++|++
T Consensus 21 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 100 (165)
T 3twr_A 21 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100 (165)
T ss_dssp HHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Confidence 33444444 34566667778888887332 345566666555 778888888 56666 8888889
Q ss_pred CCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCC
Q 003951 574 VNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYEN 638 (784)
Q Consensus 574 ~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~ 638 (784)
+|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+. |+.+++++|++.||
T Consensus 101 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 88888888999999998899999999999999998888889999988777 88889998888875
No 27
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.69 E-value=4.1e-17 Score=165.13 Aligned_cols=135 Identities=24% Similarity=0.355 Sum_probs=126.9
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEI 447 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~ 447 (784)
.++++++++|.+++++.+..+...++.+.|++|++|+.+||.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 357889999999999999999999999999999999999999999999999999999 4568999999999999999999
Q ss_pred hhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccc
Q 003951 448 GVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESI 503 (784)
Q Consensus 448 ~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~ 503 (784)
+++.+.+++++++|.++|+++.|++++|.++++++|++...+++.+.+++......
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~ 140 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNN 140 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988775443
No 28
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.69 E-value=1.2e-16 Score=160.63 Aligned_cols=151 Identities=7% Similarity=-0.001 Sum_probs=131.7
Q ss_pred hhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCe--eeh
Q 003951 370 PIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDA--FGE 446 (784)
Q Consensus 370 ~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~--fGe 446 (784)
++++++|+|.+++++.++.+...++.+.|++|++|+.+|+.++.+|+|.+|.|+++ ...+|++.++..+.+|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 57889999999999999999999999999999999999999999999999999999 567899999999999999 799
Q ss_pred hhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 447 IGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 447 ~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
.+++.+.|++++++|.++|+++.|++++|.++++++|++...+++.+.+++.................++..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L 156 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKRVASFL 156 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877544333222334444444444
No 29
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.69 E-value=3.5e-18 Score=162.15 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=77.2
Q ss_pred CCCchhhhhhcCcc----cccCCCCCCCCCCCCcc-HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEASKDQD----STACPVDVNSKVEDGQT-ELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~~~~~~----ll~~g~~~~~~d~~g~T-~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.||+|+|+.++.+ |+++|+++|.+|..|+| |||+|+..|+.+++++|+++||+++.+|..|+||||+|+..|+.
T Consensus 45 g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~ 124 (156)
T 1bi7_B 45 GRRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR 124 (156)
T ss_dssp SCCTTTSSCTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH
T ss_pred CCCHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHH
Confidence 44445555545555 88999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++|++
T Consensus 125 ~~v~~Ll~~ga~ 136 (156)
T 1bi7_B 125 DVARYLRAAAGG 136 (156)
T ss_dssp HHHHHHSSCC--
T ss_pred HHHHHHHHcCCC
Confidence 999999999998
No 30
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.69 E-value=6.8e-18 Score=175.59 Aligned_cols=120 Identities=15% Similarity=0.095 Sum_probs=101.6
Q ss_pred hhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCC
Q 003951 513 GIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDV 574 (784)
Q Consensus 513 ~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~ 574 (784)
...+..|+ |++++..+.+|.||+|.+.. .+++.+.+++.. |.||||+|| .|+.+ |+++|+|+
T Consensus 99 ~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv 178 (269)
T 4b93_B 99 ADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASI 178 (269)
T ss_dssp TTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT
T ss_pred HHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Confidence 34444555 88999999999999887432 346677777665 899999999 67777 89999999
Q ss_pred CCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHH
Q 003951 575 NSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLL 634 (784)
Q Consensus 575 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~ 634 (784)
|.+|..|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+++|+ ++++|.
T Consensus 179 n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~--i~~lL~ 236 (269)
T 4b93_B 179 NASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK--IMELLQ 236 (269)
T ss_dssp TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH--HHHHTT
T ss_pred CccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc--HHHHHH
Confidence 9999999999999999999999999999999999999999999999998775 555543
No 31
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.69 E-value=4.9e-18 Score=162.96 Aligned_cols=130 Identities=20% Similarity=0.130 Sum_probs=112.1
Q ss_pred CChhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCC
Q 003951 510 TDPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACP 571 (784)
Q Consensus 510 ~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g 571 (784)
.+....+..++ +.+++..|..|+||+|+|.. .+++.+.+++.. |.+|+|.|| .++.+ |+++|
T Consensus 13 ~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 92 (167)
T 3v31_A 13 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92 (167)
T ss_dssp TTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence 34555566666 78889999999999998432 346667776655 889999999 67776 88999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 572 VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 572 ~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..|+.+++++|++++++
T Consensus 93 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998866
No 32
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.68 E-value=9.9e-18 Score=162.90 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=110.0
Q ss_pred hhhhhhhhc---cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCC
Q 003951 512 PGIILHECI---GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPV 572 (784)
Q Consensus 512 ~~~~l~~Ll---g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~ 572 (784)
....+..++ +.+++..|..|+||||+|.. .+++.+.+++.. |.||+|+|| .++.+ |+++|+
T Consensus 17 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 96 (179)
T 3f6q_A 17 NAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96 (179)
T ss_dssp CHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 334444555 55788889999999997432 346667777655 899999999 67766 889999
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 573 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
++|.+|.+|.||||+|+..|+.+++++|+++||+++.+|..|+||+++|+..++.+++++|+++|++
T Consensus 97 ~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 97 DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163 (179)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988
No 33
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.68 E-value=6.8e-18 Score=166.03 Aligned_cols=127 Identities=17% Similarity=0.101 Sum_probs=92.5
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCC
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPV 572 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~ 572 (784)
+....+..++ |++++..|..|+||+|+|.. .+++.+.+++.. |.||+|+|| .++.+ |+++|+
T Consensus 46 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 125 (192)
T 2rfm_A 46 GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125 (192)
T ss_dssp TCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence 3344445555 67777777778888776332 235555555544 777888887 56655 777888
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcC
Q 003951 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYE 637 (784)
Q Consensus 573 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~ 637 (784)
++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..|+.+++++|++++
T Consensus 126 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 88888888888888888888888888888888888888888888888888888888888887765
No 34
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.68 E-value=2.1e-16 Score=160.35 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=125.4
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEI 447 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~ 447 (784)
.++++++++|.+++++.+..++..++.+.|++|++|+.+|+.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 467889999999999999999999999999999999999999999999999999999 5578999999999999999999
Q ss_pred hhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccc
Q 003951 448 GVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESI 503 (784)
Q Consensus 448 ~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~ 503 (784)
+++.+.+++++++|.++|+++.|++++|.++++.+|++...+++.+.+++......
T Consensus 85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~ 140 (231)
T 3e97_A 85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLNDE 140 (231)
T ss_dssp TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988774443
No 35
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.68 E-value=6.5e-18 Score=162.92 Aligned_cols=129 Identities=17% Similarity=0.072 Sum_probs=110.3
Q ss_pred Chhhhhhhhc--cCC-CCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCC
Q 003951 511 DPGIILHECI--GGP-TIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACP 571 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~-~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g 571 (784)
+....+..++ +.+ ++..|..|+||||+|.. .+++.+.+++.. |.+|+|+|| .++.+ |+++|
T Consensus 13 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 92 (172)
T 3v30_A 13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92 (172)
T ss_dssp TCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred CCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 4445555555 333 67778899999997432 346667777655 899999999 66666 89999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 572 VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 572 ~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++
T Consensus 93 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (172)
T 3v30_A 93 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK 160 (172)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999977
No 36
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.68 E-value=3.7e-18 Score=158.06 Aligned_cols=87 Identities=28% Similarity=0.281 Sum_probs=58.3
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.|++|.|| .++.+ |+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 10 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 89 (137)
T 3c5r_A 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHV 89 (137)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCH
Confidence 455566666 55555 6666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++|++
T Consensus 90 ~~v~~Ll~~ga~ 101 (137)
T 3c5r_A 90 DIVKLLLSYGAS 101 (137)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 666666666665
No 37
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.68 E-value=1.4e-16 Score=147.50 Aligned_cols=126 Identities=19% Similarity=0.274 Sum_probs=116.1
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIG 448 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~ 448 (784)
.++++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++... + ..+.+|++||+.+
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~---~~~~~G~~~G~~~ 83 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P---VELGPGAFFGEMA 83 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C---EEECTTCEECHHH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c---ceECCCCEeeehH
Confidence 467899999999999999999999999999999999999999999999999999998321 2 4789999999999
Q ss_pred hhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhh
Q 003951 449 VLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQ 500 (784)
Q Consensus 449 ~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~ 500 (784)
++.+.+++++++|.++|+++.|++++|.++++++|++...+++.+.+|++..
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~~~ 135 (138)
T 1vp6_A 84 LISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAA 135 (138)
T ss_dssp HHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC--
T ss_pred hccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999887654
No 38
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.68 E-value=2e-17 Score=156.25 Aligned_cols=120 Identities=14% Similarity=0.067 Sum_probs=84.5
Q ss_pred hhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCC
Q 003951 513 GIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDV 574 (784)
Q Consensus 513 ~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~ 574 (784)
...++.++ |.+.+ .|..|+||+|.|.. .+++.+.+++.. |.||+|.|| .++.+ |+++|+++
T Consensus 15 ~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 93 (153)
T 1awc_B 15 DDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93 (153)
T ss_dssp HHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred HHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCC
Confidence 34444444 55444 46678888776332 235555555544 777888777 56555 77778888
Q ss_pred CCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHH
Q 003951 575 NSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLL 633 (784)
Q Consensus 575 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL 633 (784)
|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..|+.+++++|
T Consensus 94 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888877776
No 39
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.67 E-value=3.8e-17 Score=170.62 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=108.9
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccc--------------------------------
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRN-------------------------------- 548 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~-------------------------------- 548 (784)
+....++.|+ |++++..|..|+||||+|.. .++..+.+
T Consensus 56 g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (282)
T 1oy3_D 56 GEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135 (282)
T ss_dssp TCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccc
Confidence 4455556666 89999999999999987543 12322211
Q ss_pred ---------------ccc---cCCCchhhhh-hcCcc----cccCCCCCCCCCC-CCccHHHHHHHcCCHHHHHHHHhCC
Q 003951 549 ---------------LNF---LGPQATDIEA-SKDQD----STACPVDVNSKVE-DGQTELNAANQRGHIEMVKVLLEGG 604 (784)
Q Consensus 549 ---------------~~~---~g~~~l~~a~-~~~~~----ll~~g~~~~~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~~g 604 (784)
++. .|.||+|+|| .++.+ |+++|+++|..+. .|+||||+|+..|+.++|++|+++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g 215 (282)
T 1oy3_D 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215 (282)
T ss_dssp --------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence 222 2899999999 67766 9999999999985 5999999999999999999999999
Q ss_pred CCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 605 RNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 605 a~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|+++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 216 ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 250 (282)
T 1oy3_D 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250 (282)
T ss_dssp CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCC
Confidence 99999999999999999999999999999999998
No 40
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.67 E-value=2e-16 Score=160.68 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=125.9
Q ss_pred cccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcC
Q 003951 374 NVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYY 452 (784)
Q Consensus 374 ~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~ 452 (784)
++|+|.+++++.++.+...++.+.|++|++|+.+|+.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.+++.+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~ 93 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAE 93 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHT
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCC
Confidence 5789999999999999999999999999999999999999999999999999 557899999999999999999999999
Q ss_pred CCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 453 RPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 453 ~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
.+++++++|.++|+++.|++++|.++++++|++...+++.+.+++.................++..++
T Consensus 94 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L 161 (232)
T 2gau_A 94 ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGRLAETL 161 (232)
T ss_dssp SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877554433322333444444333
No 41
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.67 E-value=4.6e-17 Score=154.11 Aligned_cols=123 Identities=18% Similarity=0.085 Sum_probs=104.7
Q ss_pred hhhhhhhc---cCCCCCCCCCCCCCCCCCCC-------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCC
Q 003951 513 GIILHECI---GGPTIGSSLSARHQDYPYGD-------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDV 574 (784)
Q Consensus 513 ~~~l~~Ll---g~~~~~~d~~g~t~l~~~~~-------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~ 574 (784)
...+..++ +.+++..|..|+||+|++.. .+++.|.+++.. |.||+|.|| .++.+ |+++|+++
T Consensus 15 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 94 (156)
T 1bd8_A 15 VQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94 (156)
T ss_dssp HHHHHHHHHTTCCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhhCcCccccCCCCCcHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 33444444 45888889999999998322 346667777655 899999999 67766 88999999
Q ss_pred CCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhc
Q 003951 575 NSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSY 636 (784)
Q Consensus 575 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~ 636 (784)
|.+|.+|.||||+|+..|+.+++++|+++ ++++.+|..|+||||+|+..|+.+++++|+++
T Consensus 95 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 95 NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999999999999999999999999 99999999999999999999999999999875
No 42
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.67 E-value=3.1e-17 Score=169.01 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=110.3
Q ss_pred CChhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Ccccccc-ccccc---CCCchhhhh-hcCcc----cccC
Q 003951 510 TDPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETR-NLNFL---GPQATDIEA-SKDQD----STAC 570 (784)
Q Consensus 510 ~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~-~~~~~---g~~~l~~a~-~~~~~----ll~~ 570 (784)
.+....++.|+ |++++..|..|+||||+|.. .++..+. +++.. |.||+|+|| .++.+ |+++
T Consensus 67 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 146 (253)
T 1yyh_A 67 YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146 (253)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc
Confidence 34555566666 88999999999999998432 2344444 44443 899999999 67766 8899
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 571 PVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 571 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|+++|.+|..|+||||+|+..|+.+++++|+++||+++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 147 g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 215 (253)
T 1yyh_A 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215 (253)
T ss_dssp TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999987
No 43
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.67 E-value=3.5e-16 Score=158.46 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=123.0
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEI 447 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~ 447 (784)
...+++.++|.+++++.++.+...++.+.|++|+.|+.+||.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 457888999999999999999999999999999999999999999999999999999 5678999999999999999999
Q ss_pred hhhcCC-CceeEEEEccceEEEEecHHHHHHHHHhc-----HHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 448 GVLYYR-PQPFTVRTTELSQILRLSRTSLMNSIQAN-----MEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 448 ~~l~~~-~~~~tv~a~~~~~l~~l~~~~f~~ll~~~-----p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
+++.+. +++++++|.++|+++.|++++|.++++++ |++...+++.+.+++.................++..++
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L 168 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKASRLAFLDVTDRIVRTL 168 (230)
T ss_dssp GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 998875 78999999999999999999999999999 99999999999999877554433333334444444443
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.66 E-value=1.1e-16 Score=162.72 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=107.3
Q ss_pred hhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccc---------ccccCCCchhhhh-hcCcc----c
Q 003951 512 PGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRN---------LNFLGPQATDIEA-SKDQD----S 567 (784)
Q Consensus 512 ~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~---------~~~~g~~~l~~a~-~~~~~----l 567 (784)
....++.|+ |++++..|..|+||+|+|.. .++..+.+ .+..|.+|+|+|| .++.+ |
T Consensus 57 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 136 (236)
T 1ikn_D 57 QPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136 (236)
T ss_dssp CHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 344555555 88999999999999997432 22333322 1223899999999 67766 8
Q ss_pred ccCCCCCCCCCC-CCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 568 TACPVDVNSKVE-DGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 568 l~~g~~~~~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+++|+++|.+|. .|.||||+|+..|+.++|++|+++||+++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 137 l~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 209 (236)
T 1ikn_D 137 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 209 (236)
T ss_dssp HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred HHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchh
Confidence 999999999997 999999999999999999999999999999999999999999999999999999999987
No 45
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.66 E-value=7e-17 Score=168.68 Aligned_cols=130 Identities=19% Similarity=0.135 Sum_probs=108.6
Q ss_pred CCChhhhhhhhc--cC-CCCCCCCCCCCCCCCCCC-------------Cccccccccccc---CCCchhhhh-hcCcc--
Q 003951 509 TTDPGIILHECI--GG-PTIGSSLSARHQDYPYGD-------------SSMWETRNLNFL---GPQATDIEA-SKDQD-- 566 (784)
Q Consensus 509 ~~~~~~~l~~Ll--g~-~~~~~d~~g~t~l~~~~~-------------~~~~~~~~~~~~---g~~~l~~a~-~~~~~-- 566 (784)
..+....+..|+ |+ +++..|..|+||+|.+.- .++..+...+.. |.||+|+|| .|+.+
T Consensus 120 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v 199 (276)
T 4hbd_A 120 SHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVV 199 (276)
T ss_dssp HTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence 345556666677 66 889999999999987541 123334333332 899999999 67766
Q ss_pred --cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCC
Q 003951 567 --STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLE-GGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYEN 638 (784)
Q Consensus 567 --ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~ 638 (784)
|+++|+|+|.+|.+|+||||+|+..|+.++|++|++ .|||++.+|..|+||||+|+..|+.+++++|++++.
T Consensus 200 ~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 200 KALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 899999999999999999999999999999999999 899999999999999999999999999999998763
No 46
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.66 E-value=2.6e-16 Score=141.28 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTS 304 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~ 304 (784)
.|.+|+||+++|+||+||||++|.|+.+++++++++++|++++++.+|.+++.+.+..+
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999998876544
No 47
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.66 E-value=5.7e-17 Score=165.53 Aligned_cols=111 Identities=22% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCCCCCCCCCCC--------Cccccccccccc--CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCC
Q 003951 529 LSARHQDYPYGD--------SSMWETRNLNFL--GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGH 593 (784)
Q Consensus 529 ~~g~t~l~~~~~--------~~~~~~~~~~~~--g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~ 593 (784)
..|.||||.+.. .+++.|.+++.. |.|++|.|| .|+.+ |++.|+|+|.+|.+|+||||+|+..|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~ 82 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 82 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 358899887543 456667676655 688999999 77777 889999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 594 IEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 594 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.++|++|+++||++|.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 83 ~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 128 (239)
T 1ycs_B 83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128 (239)
T ss_dssp HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999988
No 48
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.65 E-value=1e-17 Score=163.85 Aligned_cols=126 Identities=8% Similarity=-0.053 Sum_probs=102.1
Q ss_pred hhhhhhccCCCCCCC-CCCCCCCCCCCC------------Cccccccccccc---CCCchhhhh-hcCc------c----
Q 003951 514 IILHECIGGPTIGSS-LSARHQDYPYGD------------SSMWETRNLNFL---GPQATDIEA-SKDQ------D---- 566 (784)
Q Consensus 514 ~~l~~Llg~~~~~~d-~~g~t~l~~~~~------------~~~~~~~~~~~~---g~~~l~~a~-~~~~------~---- 566 (784)
..+..+++.+++..+ ..|+||||+|.. .+++.|.+++.. |.||||+|+ .++. +
T Consensus 20 ~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~ 99 (186)
T 3t8k_A 20 EDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKI 99 (186)
T ss_dssp HHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHH
Confidence 334455544555555 678999887543 246778888876 889999988 4442 2
Q ss_pred cccCCCCCCCCCCCCc-cHHHHHHHcC-----CHHHHHHHHh-CCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 567 STACPVDVNSKVEDGQ-TELNAANQRG-----HIEMVKVLLE-GGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 567 ll~~g~~~~~~d~~g~-T~Lh~A~~~g-----~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|+++|+|+|.+|..|+ ||||+|+..| +.+++++|++ +|||++.+|..|+||||+|+..|+.+++++|.++..+
T Consensus 100 Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 100 FLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp HHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999999999 9999999944 4679999999 9999999999999999999999999999999988754
No 49
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.65 E-value=3.8e-17 Score=148.21 Aligned_cols=87 Identities=31% Similarity=0.429 Sum_probs=81.3
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.+|+|.|+ .++.+ |+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+|||+.|+..|+.
T Consensus 35 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 114 (126)
T 1n0r_A 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 114 (126)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcH
Confidence 677888888 67766 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++||+
T Consensus 115 ~~~~~Ll~~Gad 126 (126)
T 1n0r_A 115 EVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999974
No 50
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.65 E-value=6.9e-17 Score=163.35 Aligned_cols=133 Identities=23% Similarity=0.304 Sum_probs=125.9
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEI 447 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~ 447 (784)
.++++++++|.+++++.++.+...++.+.|++|+.|+.+|+.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 467899999999999999999999999999999999999999999999999999999 5678899999999999999999
Q ss_pred hhhcCCC-ceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhc
Q 003951 448 GVLYYRP-QPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQE 501 (784)
Q Consensus 448 ~~l~~~~-~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~ 501 (784)
+++.+.| ++++++|.++|+++.|++++|.++++.+|++...+++.+.+++....
T Consensus 88 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 142 (227)
T 3dkw_A 88 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRI 142 (227)
T ss_dssp TTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999999999999999887644
No 51
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.64 E-value=3e-16 Score=145.01 Aligned_cols=85 Identities=24% Similarity=0.229 Sum_probs=77.7
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.|++|.|| .++.+ |+++|+++|..|.+|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 47 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~ 126 (136)
T 2jab_A 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126 (136)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCH
Confidence 556678888 67766 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcC
Q 003951 628 SMYDLLLSYE 637 (784)
Q Consensus 628 ~i~~lL~~~~ 637 (784)
+++++|+++|
T Consensus 127 ~~~~~Ll~~G 136 (136)
T 2jab_A 127 DLAEILQKLN 136 (136)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHcC
Confidence 9999999876
No 52
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.64 E-value=4.1e-17 Score=160.44 Aligned_cols=117 Identities=21% Similarity=0.047 Sum_probs=103.7
Q ss_pred CCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHH
Q 003951 523 PTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELN 586 (784)
Q Consensus 523 ~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh 586 (784)
..+..|..|+||||+|.. .+++.+.+++.. |.||+|+|| .++.+ |+++|++++.+|..|.||||
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 356778899999998432 245556666554 899999999 67766 89999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 587 AANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 587 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 159 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD 159 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999987
No 53
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.64 E-value=9.3e-17 Score=162.78 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=109.4
Q ss_pred Chhhhhhhhc---cCCCCCCCCCCCCCCCCCCC--------Ccccccccc-----c---ccCCCchhhhh-hcCcc----
Q 003951 511 DPGIILHECI---GGPTIGSSLSARHQDYPYGD--------SSMWETRNL-----N---FLGPQATDIEA-SKDQD---- 566 (784)
Q Consensus 511 ~~~~~l~~Ll---g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~-----~---~~g~~~l~~a~-~~~~~---- 566 (784)
+....++.++ |++++..|..|+||||+|.. .+++.+.++ + ..|.||+|+|| .++.+
T Consensus 14 g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 93 (232)
T 2rfa_A 14 NDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93 (232)
T ss_dssp TCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHH
Confidence 3444555555 77899999999999998432 245555544 2 24899999999 67776
Q ss_pred cccCCCCCCCCCC-------------CCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHH---
Q 003951 567 STACPVDVNSKVE-------------DGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMY--- 630 (784)
Q Consensus 567 ll~~g~~~~~~d~-------------~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~--- 630 (784)
|+++|++++..+. .|.||||+|+..|+.+++++|+++|||++.+|..|+||||+|+..|+.+++
T Consensus 94 Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i 173 (232)
T 2rfa_A 94 LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQM 173 (232)
T ss_dssp HHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHH
T ss_pred HHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHH
Confidence 9999999999876 799999999999999999999999999999999999999999999999988
Q ss_pred -HHHHhcCCC
Q 003951 631 -DLLLSYENR 639 (784)
Q Consensus 631 -~lL~~~~~~ 639 (784)
++|+++|+.
T Consensus 174 ~~~Ll~~g~~ 183 (232)
T 2rfa_A 174 YNLLLSYDGG 183 (232)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHhcCCc
Confidence 999999987
No 54
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.64 E-value=9.9e-17 Score=162.41 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=113.0
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCC
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPV 572 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~ 572 (784)
+....++.|+ |++++..|..|+||+|+|.. .+++.+.+++.. |.||+|.|+ .++.+ |+++|+
T Consensus 51 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 130 (231)
T 3aji_A 51 GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130 (231)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3445555666 88999999999999998432 346667776655 899999999 66666 889999
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 573 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 131 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 197 (231)
T 3aji_A 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197 (231)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999987
No 55
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.63 E-value=1.2e-16 Score=160.86 Aligned_cols=119 Identities=16% Similarity=0.095 Sum_probs=71.9
Q ss_pred cCCCCCCCCCCCCCCCCCCC--------Ccccccc-ccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCcc
Q 003951 521 GGPTIGSSLSARHQDYPYGD--------SSMWETR-NLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQT 583 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~--------~~~~~~~-~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T 583 (784)
|++++..|..|+||+|+|.. .+++.+. +++.. |.+|+|.|| .++.+ |+++|++++..|..|.|
T Consensus 48 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 127 (223)
T 2f8y_A 48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 127 (223)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCB
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCc
Confidence 55666666666666665321 1222222 22222 566666666 44444 66666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 584 ELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 584 ~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 183 (223)
T 2f8y_A 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 66666666666666666666666666666666666666666666666666666655
No 56
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.63 E-value=1.3e-15 Score=144.02 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=108.9
Q ss_pred hhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeeh
Q 003951 367 LFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGE 446 (784)
Q Consensus 367 ~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe 446 (784)
....+++++++|.+++++.+..++..++.+.|.+|++|+.+|+.++.+|+|.+|.|+++. +| ..+..+.+|++||+
T Consensus 35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~--~~~~~~~~G~~fGe 110 (154)
T 3pna_A 35 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NN--EWATSVGEGGSFGE 110 (154)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TT--EEEEEECTTCEECC
T ss_pred HHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CC--EEEEEecCCCEeee
Confidence 456788999999999999999999999999999999999999999999999999999985 44 36788999999999
Q ss_pred hhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHH
Q 003951 447 IGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRI 488 (784)
Q Consensus 447 ~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~ 488 (784)
.+++.+.+++++++|.++|+++.|++++|.++++++|...+.
T Consensus 111 ~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~ 152 (154)
T 3pna_A 111 LALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK 152 (154)
T ss_dssp HHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred hHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence 999999999999999999999999999999999999987654
No 57
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.63 E-value=1.1e-16 Score=158.41 Aligned_cols=125 Identities=22% Similarity=0.145 Sum_probs=87.6
Q ss_pred hhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Ccc-ccccccccc---CCCchhhhh-hcCcc----cccCC-C
Q 003951 513 GIILHECI--GGPTIGSSLSARHQDYPYGD--------SSM-WETRNLNFL---GPQATDIEA-SKDQD----STACP-V 572 (784)
Q Consensus 513 ~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~-~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g-~ 572 (784)
...++.|+ |++++..|..|+||+|+|.. .++ ..+.+++.. |.+|+|.|| .++.+ |+++| +
T Consensus 52 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 131 (201)
T 3hra_A 52 IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 34444444 77777777778888776322 123 222233333 677888877 55555 77777 7
Q ss_pred CCCCCCCCCccHHHHHHHcCC-----HHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcC
Q 003951 573 DVNSKVEDGQTELNAANQRGH-----IEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYE 637 (784)
Q Consensus 573 ~~~~~d~~g~T~Lh~A~~~g~-----~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~ 637 (784)
++|.+|..|+||||+|+..|+ .+++++|+++||+++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 132 ~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 788888888888888887776 78888888888888888888888888888888888888887765
No 58
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.63 E-value=1.3e-15 Score=152.02 Aligned_cols=145 Identities=20% Similarity=0.232 Sum_probs=122.9
Q ss_pred cccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCC-
Q 003951 376 YLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYR- 453 (784)
Q Consensus 376 ~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~- 453 (784)
.+++.++++.++.+...++.+.|++|+.|+.+|+.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 35677999999999999999999999999999999999999999999999 5578999999999999999999999888
Q ss_pred CceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 454 PQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 454 ~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
+++++++|.++|+++.|++++|.++++++|++...+++.+.+++.................++..++
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L 148 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTL 148 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999998877554333323334444444433
No 59
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.63 E-value=1.5e-15 Score=160.44 Aligned_cols=145 Identities=14% Similarity=0.225 Sum_probs=130.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeec
Q 003951 350 ETLVGLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVD 429 (784)
Q Consensus 350 ~~l~~Lp~~Lr~~i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~ 429 (784)
....++|+..|.+...++..++++++++|++++++.+..|+..++.+.|++|++|+++||.++.+|+|.+|.|+++. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~ 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--E 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--T
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--C
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999963 4
Q ss_pred CceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 003951 430 GQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLK 498 (784)
Q Consensus 430 g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~ 498 (784)
| ..+..+.+|++|||.+++.+.|++++++|.++|+++.|++++|.+++..+|.........+.+++.
T Consensus 97 g--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~ 163 (299)
T 3shr_A 97 G--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVP 163 (299)
T ss_dssp T--EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred C--EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCH
Confidence 4 578899999999999999999999999999999999999999999999999876655555554433
No 60
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.63 E-value=1.8e-15 Score=162.61 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=121.8
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEI 447 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~ 447 (784)
.++++++++|++++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|+++ ...+|++ ++..+.+|++|||.
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~ 90 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEI 90 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHH
Confidence 468899999999999999999999999999999999999999999999999999999 4456665 89999999999999
Q ss_pred hhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHh
Q 003951 448 GVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKD 499 (784)
Q Consensus 448 ~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 499 (784)
+++.+.+++++++|.++|+++.|++++|.+++ ++|.+...+++.+.+++..
T Consensus 91 ~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~~ 141 (333)
T 4ava_A 91 ALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLAA 141 (333)
T ss_dssp HHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 9999999999999999873
No 61
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.62 E-value=1.7e-16 Score=159.78 Aligned_cols=129 Identities=18% Similarity=0.136 Sum_probs=112.3
Q ss_pred Chhhhhhhhc--cC-CCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCC
Q 003951 511 DPGIILHECI--GG-PTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACP 571 (784)
Q Consensus 511 ~~~~~l~~Ll--g~-~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g 571 (784)
+....+..++ ++ +++..|..|+||+|.|.. .++..+.+++.. |.||+|+|| .++.+ |+++|
T Consensus 69 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 148 (223)
T 2f8y_A 69 DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148 (223)
T ss_dssp TCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 4455555666 44 788889999999998432 345666666655 899999999 67776 89999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 572 VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 572 ~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+++|.+|..|.||||+|+..|+.+++++|+++||+++.+|..|+||+++|+..|+.+++++|+++|+.
T Consensus 149 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 149 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
No 62
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.62 E-value=3e-16 Score=145.09 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=107.5
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEE--EecCCCeeeh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLG--KAVAGDAFGE 446 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~--~l~~G~~fGe 446 (784)
.++++++++|..++++.+..|+..++.+.|++|+.|+++||.++.+|+|.+|.|++....+|++.++. .+.+|++|||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe 84 (137)
T 1wgp_A 5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGD 84 (137)
T ss_dssp SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSST
T ss_pred HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecH
Confidence 35788999999999999999999999999999999999999999999999999997656678877666 9999999999
Q ss_pred hhh---hcCCC------ceeEEEEccceEEEEecHHHHHHHHHhcHHHH
Q 003951 447 IGV---LYYRP------QPFTVRTTELSQILRLSRTSLMNSIQANMEDG 486 (784)
Q Consensus 447 ~~~---l~~~~------~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~ 486 (784)
.++ +.+.+ ++++++|.++|+++.|++++|.++++++|++.
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~ 133 (137)
T 1wgp_A 85 ELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSG 133 (137)
T ss_dssp HHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCT
T ss_pred HHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhH
Confidence 995 77774 57899999999999999999999999998754
No 63
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.62 E-value=6.9e-17 Score=169.58 Aligned_cols=127 Identities=17% Similarity=0.071 Sum_probs=110.6
Q ss_pred hhhhhhc-cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc-CCCchhhhh-hcCcc----cccCCCCCCCCC
Q 003951 514 IILHECI-GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL-GPQATDIEA-SKDQD----STACPVDVNSKV 578 (784)
Q Consensus 514 ~~l~~Ll-g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~-g~~~l~~a~-~~~~~----ll~~g~~~~~~d 578 (784)
..+.+++ ..+++..|.+|+||||+|.. .+++.|.+++.. |.||+|+|| .++.+ |+++|+++|.+|
T Consensus 13 ~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d 92 (285)
T 3kea_A 13 KQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFD 92 (285)
T ss_dssp HHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 3344444 55789999999999998432 356677777766 899999999 67777 899999999999
Q ss_pred CCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCchhhhccCCChhHHHHHHhcCCCC
Q 003951 579 EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG-WSPKAPAEQPVNRSMYDLLLSYENRT 640 (784)
Q Consensus 579 ~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g-~tpl~~A~~~g~~~i~~lL~~~~~~~ 640 (784)
..|+||||+|+..|+.+++++|+++|++++.+|..| .||||+|+..|+.+++++|+++|+..
T Consensus 93 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~ 155 (285)
T 3kea_A 93 DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST 155 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999 79999999999999999999999873
No 64
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.62 E-value=1.4e-16 Score=164.06 Aligned_cols=128 Identities=16% Similarity=0.108 Sum_probs=108.2
Q ss_pred hhhhhhhhc--cC-CCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCC
Q 003951 512 PGIILHECI--GG-PTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPV 572 (784)
Q Consensus 512 ~~~~l~~Ll--g~-~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~ 572 (784)
....+..|+ ++ +++..|..|+||+|+|.. .+++.+.+++.. |.||+|+|| .++.+ |+++|+
T Consensus 102 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga 181 (253)
T 1yyh_A 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181 (253)
T ss_dssp CHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 344455555 44 788889999999997432 346677777665 899999999 67777 999999
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 573 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
++|.+|..|.||||+|+..|+.+++++|+++||+++.+|..|+||+++|+..||.+|+++|......
T Consensus 182 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 182 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999988754
No 65
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.62 E-value=2.2e-15 Score=149.93 Aligned_cols=140 Identities=16% Similarity=0.250 Sum_probs=119.9
Q ss_pred CCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCC----Cc
Q 003951 381 VSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYR----PQ 455 (784)
Q Consensus 381 ~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~----~~ 455 (784)
+|++.++.+...++.+.|++|++|+.+|+.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.+++.+. |+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 578999999999999999999999999999999999999999999 5567999999999999999999999988 89
Q ss_pred eeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 456 PFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 456 ~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
+++++|.++|+++.|++++|.++++++|++...+++.+.+++.................++..++
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~Rl~~~L 145 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTL 145 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877544333323333444444333
No 66
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.62 E-value=3.2e-16 Score=142.09 Aligned_cols=89 Identities=28% Similarity=0.276 Sum_probs=83.6
Q ss_pred ccCCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCC
Q 003951 551 FLGPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPV 625 (784)
Q Consensus 551 ~~g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g 625 (784)
..|.+++|.|| .++.+ |++.|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 34778999999 77777 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhcCCC
Q 003951 626 NRSMYDLLLSYENR 639 (784)
Q Consensus 626 ~~~i~~lL~~~~~~ 639 (784)
+.+++++|+++|++
T Consensus 85 ~~~~v~~Ll~~ga~ 98 (123)
T 3aaa_C 85 HVSCVKLLLSKGAD 98 (123)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999987
No 67
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.62 E-value=7.8e-17 Score=163.16 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=109.2
Q ss_pred hhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCC
Q 003951 515 ILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNS 576 (784)
Q Consensus 515 ~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~ 576 (784)
.++.|+ |++++..|..|+||+|.+.. .+++.+.+++.. |.+|+|.|+ .++.+ |+++|+++|.
T Consensus 88 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 167 (231)
T 3aji_A 88 IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI 167 (231)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc
Confidence 344444 78888899999999997432 345666666654 899999999 77777 8999999999
Q ss_pred CCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 577 KVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 577 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|..|.||||+|+..|+.+++++|+++||+++.+|..|+||+++|+..++.+++++|.++|++
T Consensus 168 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 999999999999999999999999999999999999999999999999999999999998864
No 68
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.62 E-value=5.1e-16 Score=138.81 Aligned_cols=87 Identities=28% Similarity=0.371 Sum_probs=83.8
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.+++|.|| .++.+ |+++|+++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 9 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~ 88 (115)
T 2l6b_A 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHH 88 (115)
T ss_dssp SCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCH
Confidence 788999999 77777 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++|++
T Consensus 89 ~~~~~Ll~~ga~ 100 (115)
T 2l6b_A 89 EIVKLLDAKGAD 100 (115)
T ss_dssp HHHHHHHTTSSS
T ss_pred HHHHHHHHcCCC
Confidence 999999999988
No 69
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.62 E-value=1.3e-16 Score=165.25 Aligned_cols=128 Identities=15% Similarity=0.077 Sum_probs=108.5
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc--CCCchhhhh-hcCcc----cccCCCC
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL--GPQATDIEA-SKDQD----STACPVD 573 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~--g~~~l~~a~-~~~~~----ll~~g~~ 573 (784)
+....++.|+ |++++..|.+|+||+|+|.. .+++.+.+++.. |.||+|.|+ .++.+ |+++|++
T Consensus 47 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 126 (261)
T 2xai_A 47 GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 126 (261)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 3444555555 88999999999999997432 345566655544 889999999 66666 8899999
Q ss_pred CCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 574 VNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 574 ~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|.+|.+|.||||+|+..|+.+++++|+++|++++. |..|+||||+|+..|+.+++++|+++|++
T Consensus 127 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad 191 (261)
T 2xai_A 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGAD 191 (261)
T ss_dssp TTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999996 88999999999999999999999999988
No 70
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.62 E-value=1.9e-16 Score=167.00 Aligned_cols=61 Identities=25% Similarity=0.382 Sum_probs=58.6
Q ss_pred CCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 579 EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 579 ~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
..|.||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad 257 (299)
T 1s70_B 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257 (299)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Confidence 4678899999999999999999999999999999999999999999999999999999988
No 71
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.62 E-value=1.1e-15 Score=161.44 Aligned_cols=136 Identities=18% Similarity=0.216 Sum_probs=127.6
Q ss_pred hhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEe--ecCceeEEEEecCCCee
Q 003951 367 LFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHY--VDGQDKVLGKAVAGDAF 444 (784)
Q Consensus 367 ~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~--~~g~~~~~~~l~~G~~f 444 (784)
.+..+++++++|..++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++.. .+|++.++..+.+|++|
T Consensus 154 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~f 233 (299)
T 3shr_A 154 EYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWF 233 (299)
T ss_dssp HHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEE
T ss_pred HHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEe
Confidence 3467788899999999999999999999999999999999999999999999999999954 47888999999999999
Q ss_pred ehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhcc
Q 003951 445 GEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQES 502 (784)
Q Consensus 445 Ge~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~ 502 (784)
||.+++.+.|++++++|.++|+++.|++++|.++++.+|++...+++.+.+|++..+.
T Consensus 234 Ge~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~~ 291 (299)
T 3shr_A 234 GEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAE 291 (299)
T ss_dssp CGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcchh
Confidence 9999999999999999999999999999999999999999999999999999887553
No 72
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.61 E-value=1.2e-16 Score=164.81 Aligned_cols=119 Identities=17% Similarity=0.114 Sum_probs=103.6
Q ss_pred cCCCCC----CCCCCCCCCCCCC------C-----Cccccccccc--------------ccCCCchhhhh-hcCcc----
Q 003951 521 GGPTIG----SSLSARHQDYPYG------D-----SSMWETRNLN--------------FLGPQATDIEA-SKDQD---- 566 (784)
Q Consensus 521 g~~~~~----~d~~g~t~l~~~~------~-----~~~~~~~~~~--------------~~g~~~l~~a~-~~~~~---- 566 (784)
|++++. .|..|+||||+|. . .+++.+.+++ ..|.||||+|| .++.+
T Consensus 29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~ 108 (256)
T 2etb_A 29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKL 108 (256)
T ss_dssp TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHH
T ss_pred CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHH
Confidence 788888 7999999999853 2 2344444433 34999999999 67777
Q ss_pred cccCCCCCCCCCCC-------------CccHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCCchhhhcc--CCChh
Q 003951 567 STACPVDVNSKVED-------------GQTELNAANQRGHIEMVKVLLE---GGRNGNKPDAKGWSPKAPAEQ--PVNRS 628 (784)
Q Consensus 567 ll~~g~~~~~~d~~-------------g~T~Lh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~tpl~~A~~--~g~~~ 628 (784)
|+++|+++|..|.. |.||||+|+..|+.++|++|++ +||++|.+|..|+||||+|+. .|+.+
T Consensus 109 Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~ 188 (256)
T 2etb_A 109 LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPE 188 (256)
T ss_dssp HHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred HHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCch
Confidence 99999999999986 9999999999999999999999 999999999999999999998 78888
Q ss_pred -------HHHHHHhcCCC
Q 003951 629 -------MYDLLLSYENR 639 (784)
Q Consensus 629 -------i~~lL~~~~~~ 639 (784)
++++|+++|++
T Consensus 189 ~~~~~~~iv~~Ll~~ga~ 206 (256)
T 2etb_A 189 NSALVIHMYDGLLQMGAR 206 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCC
Confidence 99999999987
No 73
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.61 E-value=5.9e-16 Score=141.91 Aligned_cols=92 Identities=21% Similarity=0.367 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCC
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRETVRAVSEFATRNHL 325 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~~~~~m~~~~l 325 (784)
.|.+|+||+++|+|||||||++|.|+.|+++++++|++|+++++++++.+++.+.....+..+.++..+..+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 38999999999999999999999999999999999999999999999999988765444333322222222222233445
Q ss_pred ChHHHHHHHHHH
Q 003951 326 PPHIHDQMLSHI 337 (784)
Q Consensus 326 ~~~l~~~v~~~~ 337 (784)
+++.+..+++++
T Consensus 123 ~~~~i~~l~~~l 134 (137)
T 4h33_A 123 TKEEIAVVEQFL 134 (137)
T ss_dssp ------------
T ss_pred cHHHHHHHHHHH
Confidence 555555555544
No 74
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.61 E-value=1.1e-14 Score=135.88 Aligned_cols=113 Identities=19% Similarity=0.321 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHH
Q 003951 198 CTKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFD 277 (784)
Q Consensus 198 ~~~li~~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~ 277 (784)
.+.+++.++++.+++++++|...+ .| .|.+|+||+++|+|||||||++|.|..+++++
T Consensus 26 ~~~~~~~~~~~~~~~g~~~~~~~e-------~~---------------~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~ 83 (148)
T 3vou_A 26 EFQVLFVLTFLTLTSGTIFYSTVE-------GL---------------RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFT 83 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-------CC---------------CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------CC---------------CHHHHHHHHHHHHHccCCCCCCCCCccHHHHH
Confidence 344555566667777888776432 13 38899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHH------HHHHH----hHhHHHHHHHHHHHHHHHHHcCCChHHHHH
Q 003951 278 IFYMLFNLGLTSYIIGNMTN------LVVHW----TSRTRNFRETVRAVSEFATRNHLPPHIHDQ 332 (784)
Q Consensus 278 i~~~l~g~~~~a~~ig~i~~------ii~~~----~~~~~~~~~~~~~~~~~m~~~~l~~~l~~~ 332 (784)
++++++|++++++.++.++. +.... +....+..+++++++++++.++.|++|+.|
T Consensus 84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 84 ILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 99999999999999999886 33322 333445566788889999999999988765
No 75
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.60 E-value=1e-15 Score=153.97 Aligned_cols=145 Identities=15% Similarity=0.117 Sum_probs=126.6
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIG 448 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~ 448 (784)
+.+++++++|..++++.+..+...++.+.|++|++|+.+||.++.+|+|.+|.|+++...+|++.++..+.+|++||+
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~-- 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT-- 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES--
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC--
Confidence 457889999999999999999999999999999999999999999999999999998778899999999999999999
Q ss_pred hhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 449 VLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 449 ~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
+++++++|.++|+++.|++++|.++++++|++...+++.+.+++.................++..++
T Consensus 81 -----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rl~~~L 147 (220)
T 2fmy_A 81 -----HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLAEFL 147 (220)
T ss_dssp -----CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred -----ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8899999999999999999999999999999999999999998877554433322333444444333
No 76
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.60 E-value=1.3e-16 Score=161.72 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=106.9
Q ss_pred Chhhhhhhhc--cCCC-----CCCCCCCCCCCCCCCC--------Ccccccccccc----------------cCCCchhh
Q 003951 511 DPGIILHECI--GGPT-----IGSSLSARHQDYPYGD--------SSMWETRNLNF----------------LGPQATDI 559 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~-----~~~d~~g~t~l~~~~~--------~~~~~~~~~~~----------------~g~~~l~~ 559 (784)
+....++.|+ |+++ +..|..|+||||+|.. .+++.+.+++. .|.||+|+
T Consensus 48 g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 127 (232)
T 2rfa_A 48 DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF 127 (232)
T ss_dssp TCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHH
T ss_pred CCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHH
Confidence 3444455555 4444 6667789999887432 23555555554 48999999
Q ss_pred hh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHH----HHHHhCCCCC------CCCCCCCCCchhhhccC
Q 003951 560 EA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMV----KVLLEGGRNG------NKPDAKGWSPKAPAEQP 624 (784)
Q Consensus 560 a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v----~~Ll~~ga~~------~~~d~~g~tpl~~A~~~ 624 (784)
|| .++.+ |+++|+|+|.+|.+|+||||+|+..|+.+++ ++|+++|+++ +.+|..|+||||+|+..
T Consensus 128 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~ 207 (232)
T 2rfa_A 128 AACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE 207 (232)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHc
Confidence 99 67777 8999999999999999999999999999988 9999999998 58999999999999999
Q ss_pred CChhHHHHHHhcCCC
Q 003951 625 VNRSMYDLLLSYENR 639 (784)
Q Consensus 625 g~~~i~~lL~~~~~~ 639 (784)
|+.+++++|+++|+.
T Consensus 208 g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 208 GNIVMFQHLMQKRKH 222 (232)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcc
Confidence 999999999999976
No 77
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.60 E-value=2.3e-16 Score=151.18 Aligned_cols=110 Identities=17% Similarity=0.114 Sum_probs=97.5
Q ss_pred CCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCC
Q 003951 530 SARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGH 593 (784)
Q Consensus 530 ~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~ 593 (784)
+|+||+|.|.. .+++.+.+++.. |.||+|+|| .++.+ |+++|++++..|..|.||||.|+..|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 57888887432 245556665554 899999999 67777 889999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 594 IEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 594 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 127 (167)
T 3v31_A 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127 (167)
T ss_dssp HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999987
No 78
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.60 E-value=4.3e-16 Score=158.44 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=104.7
Q ss_pred CCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCC------CCCCCC
Q 003951 522 GPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVD------VNSKVE 579 (784)
Q Consensus 522 ~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~------~~~~d~ 579 (784)
++++..|..|+||||+|.. .++..|.+++.. |.+|+|+|| .++.+ |++.|++ ++..|.
T Consensus 36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 115 (236)
T 1ikn_D 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 115 (236)
T ss_dssp CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT
T ss_pred HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCC
Confidence 4788889999999998432 467777777765 899999999 67776 8888876 577889
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 580 DGQTELNAANQRGHIEMVKVLLEGGRNGNKPDA-KGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 580 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.|.||||+|+..|+.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|++
T Consensus 116 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 176 (236)
T 1ikn_D 116 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176 (236)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999999998 999999999999999999999999988
No 79
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.60 E-value=3.2e-16 Score=159.52 Aligned_cols=130 Identities=16% Similarity=0.142 Sum_probs=110.8
Q ss_pred CChhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Ccccccc----ccccc---CCCchhhhh-hcCcc----c
Q 003951 510 TDPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETR----NLNFL---GPQATDIEA-SKDQD----S 567 (784)
Q Consensus 510 ~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~----~~~~~---g~~~l~~a~-~~~~~----l 567 (784)
.+....++.|+ |++++..|..|+||+|++.. .+++.+. +++.. |.+|+|.|+ .++.+ |
T Consensus 56 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 135 (241)
T 1k1a_A 56 TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135 (241)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHH
Confidence 34455566666 88999999999999998432 2333333 33333 899999999 67766 8
Q ss_pred ccCCCCCCCCC-CCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 568 TACPVDVNSKV-EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 568 l~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 136 l~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 208 (241)
T 1k1a_A 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208 (241)
T ss_dssp HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 99999999999 8999999999999999999999999999999999999999999999999999999999988
No 80
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.60 E-value=4.2e-16 Score=157.36 Aligned_cols=130 Identities=18% Similarity=0.088 Sum_probs=108.0
Q ss_pred CChhhhhhhhc--c--CCCCC-CCCCCCCCCCCCCC--------Cccccc--cccccc---CCCchhhhh-hcCcc----
Q 003951 510 TDPGIILHECI--G--GPTIG-SSLSARHQDYPYGD--------SSMWET--RNLNFL---GPQATDIEA-SKDQD---- 566 (784)
Q Consensus 510 ~~~~~~l~~Ll--g--~~~~~-~d~~g~t~l~~~~~--------~~~~~~--~~~~~~---g~~~l~~a~-~~~~~---- 566 (784)
.+....++.++ | .+++. .|..|+||+|+|.. .+++.+ .+++.. |.+|+|.|+ .++.+
T Consensus 46 ~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 125 (228)
T 2dzn_A 46 FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125 (228)
T ss_dssp TTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHH
Confidence 34555566666 5 45555 67889999998432 245555 444443 899999999 66666
Q ss_pred cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCchhhhccCCChhHHHHHH-hcCCC
Q 003951 567 STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGG-RNGNKPDAKGWSPKAPAEQPVNRSMYDLLL-SYENR 639 (784)
Q Consensus 567 ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~lL~-~~~~~ 639 (784)
|+++|++++.+|..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+ ++|++
T Consensus 126 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~ 200 (228)
T 2dzn_A 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200 (228)
T ss_dssp HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC
T ss_pred HHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 88999999999999999999999999999999999999 999999999999999999999999999999 88987
No 81
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.60 E-value=1.3e-16 Score=161.79 Aligned_cols=119 Identities=14% Similarity=0.047 Sum_probs=96.6
Q ss_pred cCCCCCCC---CCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCC
Q 003951 521 GGPTIGSS---LSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDG 581 (784)
Q Consensus 521 g~~~~~~d---~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g 581 (784)
|++++..+ .+|.||||.|.. .+++.+.+++.. |.||+|+|| .++.+ |+++|+|+|.+|.+|
T Consensus 8 ~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g 87 (229)
T 2vge_A 8 AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87 (229)
T ss_dssp --CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence 55554443 344555665322 345566666554 888999999 67766 889999999999999
Q ss_pred ccHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCchhhh--ccCCChhHHHHHHhcCCC
Q 003951 582 QTELNAANQRGHIEMVKVLLEGGRNGNKPD-AKGWSPKAPA--EQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 582 ~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpl~~A--~~~g~~~i~~lL~~~~~~ 639 (784)
+||||+|+..|+.++|++|+++||+++.++ ..|+||||+| +..|+.+++++|+++|++
T Consensus 88 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~ 148 (229)
T 2vge_A 88 WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS 148 (229)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC
Confidence 999999999999999999999999999987 6999999999 999999999999999987
No 82
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.59 E-value=5.6e-17 Score=167.21 Aligned_cols=113 Identities=17% Similarity=0.125 Sum_probs=99.2
Q ss_pred CCCCCCCCCCCCCC--------Cccccccccccc----------------CCCchhhhh-hcCcc----ccc---CCCCC
Q 003951 527 SSLSARHQDYPYGD--------SSMWETRNLNFL----------------GPQATDIEA-SKDQD----STA---CPVDV 574 (784)
Q Consensus 527 ~d~~g~t~l~~~~~--------~~~~~~~~~~~~----------------g~~~l~~a~-~~~~~----ll~---~g~~~ 574 (784)
.|..|+||||+|.. .+++.|.+++.. |.||+|+|| .++.+ |++ +|+|+
T Consensus 86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~ 165 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL 165 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc
Confidence 34679999997432 346666666654 889999999 67776 888 99999
Q ss_pred CCCCCCCccHHHHHHH--cCCHH-------HHHHHHhCCCCC-------CCCCCCCCCchhhhccCCChhHHHHHHhcCC
Q 003951 575 NSKVEDGQTELNAANQ--RGHIE-------MVKVLLEGGRNG-------NKPDAKGWSPKAPAEQPVNRSMYDLLLSYEN 638 (784)
Q Consensus 575 ~~~d~~g~T~Lh~A~~--~g~~~-------~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~ 638 (784)
|.+|.+|+||||+|+. .|+.+ ++++|+++||++ +.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 9999999999999999 88998 999999999999 9999999999999999999999999999997
Q ss_pred C
Q 003951 639 R 639 (784)
Q Consensus 639 ~ 639 (784)
.
T Consensus 246 ~ 246 (256)
T 2etb_A 246 S 246 (256)
T ss_dssp H
T ss_pred C
Confidence 6
No 83
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.59 E-value=1.2e-15 Score=141.06 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=97.5
Q ss_pred cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccH
Q 003951 521 GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTE 584 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~ 584 (784)
|+|| ..|.+|+||+|.|.. .+++.+.+++.. |.||+|+|| .++.+ |+++|++++.+|..|.||
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 5677 678899999998432 346667776655 899999999 66666 889999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 585 LNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 585 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
||+|+..|+.+++++|+++||+++.+|..|+||+|+|+..++.+++.+|.+.++.
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 9999999999999999999999999999999999999999999998888777654
No 84
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.59 E-value=4.8e-16 Score=160.82 Aligned_cols=129 Identities=17% Similarity=0.032 Sum_probs=111.7
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCC
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPV 572 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~ 572 (784)
+....++.++ |++++..|.+|+||||+|.. .+++.|.+++.. |.||+|.|| .++.+ |+++|+
T Consensus 14 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 93 (261)
T 2xai_A 14 GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 93 (261)
T ss_dssp TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 3344555555 78999999999999998532 356677777755 899999999 67777 999999
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCCC
Q 003951 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENRT 640 (784)
Q Consensus 573 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~~ 640 (784)
+++. +.+|.||||.|+..|+.+++++|+++|++++.+|..|+||||.|+..|+.+++++|+++|++.
T Consensus 94 ~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 160 (261)
T 2xai_A 94 SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160 (261)
T ss_dssp CSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred CCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 9985 456999999999999999999999999999999999999999999999999999999999883
No 85
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.59 E-value=6.8e-16 Score=156.87 Aligned_cols=129 Identities=16% Similarity=0.059 Sum_probs=108.9
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccc-cccccc---CCCchhhhh-hcCcc----cccCC
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWET-RNLNFL---GPQATDIEA-SKDQD----STACP 571 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~-~~~~~~---g~~~l~~a~-~~~~~----ll~~g 571 (784)
+....++.|+ |++++..|..|+||+|.+.. .++..+ .+++.. |.+|+|.|+ .++.+ |+++|
T Consensus 55 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 134 (237)
T 3b7b_A 55 NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134 (237)
T ss_dssp TCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 4445555666 88889999999999987432 234444 344433 889999999 66666 88999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 572 VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 572 ~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
++++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 135 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad 202 (237)
T 3b7b_A 135 SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD 202 (237)
T ss_dssp CCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred CCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
No 86
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.59 E-value=4.8e-16 Score=173.50 Aligned_cols=126 Identities=22% Similarity=0.215 Sum_probs=98.7
Q ss_pred hhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCC
Q 003951 514 IILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVN 575 (784)
Q Consensus 514 ~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~ 575 (784)
..++.|+ |++++..|..|+||+|.|.. .++..+.+++.. |.||+|.|+ .++.+ |+++|+++|
T Consensus 226 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 305 (437)
T 1n11_A 226 EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305 (437)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC
Confidence 3344444 67778888888888886432 245556665544 788888888 66666 788888888
Q ss_pred CCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 576 SKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 576 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.+|..|+||||+|+..|+.++|++|+++||++|.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 306 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~ 369 (437)
T 1n11_A 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369 (437)
T ss_dssp CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCC
Confidence 8888888888888888888888888888888888888888888888888888888888888887
No 87
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.59 E-value=2.6e-16 Score=160.26 Aligned_cols=117 Identities=11% Similarity=0.081 Sum_probs=98.1
Q ss_pred CCCCCCCCCCCCCCCCCC--------Ccccccccccc----cCCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHH
Q 003951 523 PTIGSSLSARHQDYPYGD--------SSMWETRNLNF----LGPQATDIEA-SKDQD----STACPVDVNSKVEDGQTEL 585 (784)
Q Consensus 523 ~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~----~g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~L 585 (784)
+++..|..|+||+|.+.. .+++.+.+++. .|.||+|.|+ .++.+ |+++|+|+|.+|..|.|||
T Consensus 108 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 187 (241)
T 1k1a_A 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187 (241)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 778888899999997432 34566666654 3889999999 67766 8999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 586 NAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 586 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|+|+..|+.+++++|+++||+++.+|..|+||+|+|+..|+.++++.|.+.+++
T Consensus 188 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~aS 241 (241)
T 1k1a_A 188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241 (241)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-------
T ss_pred HHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCCC
Confidence 999999999999999999999999999999999999999999999999887753
No 88
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.59 E-value=5.9e-16 Score=162.42 Aligned_cols=128 Identities=15% Similarity=0.072 Sum_probs=110.0
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc--CCCchhhhh-hcCcc----cccCCCC
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL--GPQATDIEA-SKDQD----STACPVD 573 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~--g~~~l~~a~-~~~~~----ll~~g~~ 573 (784)
+....+..|+ |++++..|.+|+||+|+|.. .++..+.+++.. |.||+|+|+ .++.+ |+++|++
T Consensus 103 g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 182 (285)
T 3d9h_A 103 GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182 (285)
T ss_dssp TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 4455556666 88999999999999997432 345555555433 899999999 67777 8999999
Q ss_pred CCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 574 VNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 574 ~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|.+|.+|.||||+|+..|+.+++++|+++|++++. |..|+||||+|+..|+.+++++|+++|++
T Consensus 183 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad 247 (285)
T 3d9h_A 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGAD 247 (285)
T ss_dssp TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999995 88999999999999999999999999987
No 89
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.59 E-value=5.4e-16 Score=161.80 Aligned_cols=129 Identities=18% Similarity=0.131 Sum_probs=109.3
Q ss_pred Chhhhhhhhc--cCC---CCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----ccc
Q 003951 511 DPGIILHECI--GGP---TIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STA 569 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~---~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~ 569 (784)
+....++.|+ |++ ++..|..|+||||+|.. .+++.|.+++.. |.||+|+|| .++.+ |++
T Consensus 20 g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 99 (282)
T 1oy3_D 20 QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99 (282)
T ss_dssp TCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSS
T ss_pred CCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhc
Confidence 4445555555 666 67888899999998543 356778777765 899999999 66666 777
Q ss_pred CCCC-----------------------------------------------CCCCCCCCccHHHHHHHcCCHHHHHHHHh
Q 003951 570 CPVD-----------------------------------------------VNSKVEDGQTELNAANQRGHIEMVKVLLE 602 (784)
Q Consensus 570 ~g~~-----------------------------------------------~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~ 602 (784)
+|++ ++.+|..|.||||+|+..|+.++|++|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 179 (282)
T 1oy3_D 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179 (282)
T ss_dssp SCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 7754 78889999999999999999999999999
Q ss_pred CCCCCCCCCCC-CCCchhhhccCCChhHHHHHHhcCCC
Q 003951 603 GGRNGNKPDAK-GWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 603 ~ga~~~~~d~~-g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|++++.++.. |+||||+|+..|+.+++++|+++|++
T Consensus 180 ~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad 217 (282)
T 1oy3_D 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217 (282)
T ss_dssp HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999865 99999999999999999999999988
No 90
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.58 E-value=5.9e-15 Score=152.54 Aligned_cols=142 Identities=19% Similarity=0.222 Sum_probs=121.1
Q ss_pred ccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCC-Cce
Q 003951 379 QGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYR-PQP 456 (784)
Q Consensus 379 ~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~-~~~ 456 (784)
..++++.++.+...++.+.|++|++|+.+|+.++.+|||.+|.|+++ ...+|++.++..+.+|++||+.+++.+. +++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~ 134 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 134 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc
Confidence 45899999999999999999999999999999999999999999999 5578999999999999999999999988 899
Q ss_pred eEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 457 FTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 457 ~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
++++|.++|+++.|++++|.++++.+|++...+++.+.+++.................++..++
T Consensus 135 ~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L 198 (260)
T 3kcc_A 135 AWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLLVTGRIAQTL 198 (260)
T ss_dssp SEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred eEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877554433333334444444333
No 91
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.58 E-value=1.2e-15 Score=159.22 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=83.6
Q ss_pred CCCchhhhh-h---cCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccC
Q 003951 553 GPQATDIEA-S---KDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQP 624 (784)
Q Consensus 553 g~~~l~~a~-~---~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 624 (784)
|.||||+|| . ++.+ |+++|+|+|.+|.+|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+..
T Consensus 169 g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~ 248 (278)
T 1dcq_A 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 248 (278)
T ss_dssp TCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Confidence 788999999 5 4555 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhcCCCCC
Q 003951 625 VNRSMYDLLLSYENRTP 641 (784)
Q Consensus 625 g~~~i~~lL~~~~~~~~ 641 (784)
|+.+++++|+++|+...
T Consensus 249 ~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 249 KHEHCEELLTQALSGRF 265 (278)
T ss_dssp TCHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCCCC
Confidence 99999999999999743
No 92
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.58 E-value=4.4e-16 Score=170.07 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=106.6
Q ss_pred hhhhhhhhc--c---CCCCCCCCCCCCCCCCCCC-----------Ccccccccccc-----------cCCCchhhhh-hc
Q 003951 512 PGIILHECI--G---GPTIGSSLSARHQDYPYGD-----------SSMWETRNLNF-----------LGPQATDIEA-SK 563 (784)
Q Consensus 512 ~~~~l~~Ll--g---~~~~~~d~~g~t~l~~~~~-----------~~~~~~~~~~~-----------~g~~~l~~a~-~~ 563 (784)
....+..|+ + ++++..|..|+||+|++.. .+++.+.+++. .|.||+|+|| .+
T Consensus 211 ~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g 290 (373)
T 2fo1_E 211 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS 290 (373)
T ss_dssp CHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC
T ss_pred CHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhC
Confidence 334444555 2 6888889999999987321 24566666654 4899999999 67
Q ss_pred Ccc----cccCC-CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCC
Q 003951 564 DQD----STACP-VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYEN 638 (784)
Q Consensus 564 ~~~----ll~~g-~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~ 638 (784)
+.+ |+++| +++|.+|.+|+||||+|+..|+.++|++|+++||+++.+|..|+||||+|+..||.+++++|+++++
T Consensus 291 ~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 291 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370 (373)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred CHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 777 77665 9999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 003951 639 R 639 (784)
Q Consensus 639 ~ 639 (784)
+
T Consensus 371 ~ 371 (373)
T 2fo1_E 371 E 371 (373)
T ss_dssp -
T ss_pred c
Confidence 7
No 93
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.58 E-value=2e-16 Score=161.41 Aligned_cols=125 Identities=15% Similarity=0.084 Sum_probs=95.8
Q ss_pred hhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCC
Q 003951 514 IILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVN 575 (784)
Q Consensus 514 ~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~ 575 (784)
.....++ |++++.. ..|.||+|.|.. .+++.+.+++.. |.||||+|| .++.+ |+++|+|+|
T Consensus 19 ~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~ 97 (239)
T 1ycs_B 19 KTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 97 (239)
T ss_dssp -------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred HHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 3344444 6666544 457788776432 346666666655 889999999 67777 999999999
Q ss_pred CCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-Cchhhh--ccCCChhHHHHHHhcCCC
Q 003951 576 SKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGW-SPKAPA--EQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 576 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-tpl~~A--~~~g~~~i~~lL~~~~~~ 639 (784)
.+|.+|+||||+|+..|+.++|++|+++||+++.+|..|. ||||+| +..|+.+++++|+++|++
T Consensus 98 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~ 164 (239)
T 1ycs_B 98 AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164 (239)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999998877 999999 788999999999999987
No 94
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.58 E-value=8.1e-16 Score=152.02 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=110.8
Q ss_pred Chhhhhhhhc---cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cc-cC
Q 003951 511 DPGIILHECI---GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----ST-AC 570 (784)
Q Consensus 511 ~~~~~l~~Ll---g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll-~~ 570 (784)
+....+..++ +.+++..|.+|+||||+|.. .+++.|.+++.. |.+|+|+|+ .++.+ |+ ..
T Consensus 16 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 95 (201)
T 3hra_A 16 RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95 (201)
T ss_dssp TCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 4444555555 44889999999999998432 356777777765 899999999 67776 66 78
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCchhhhccCCC-----hhHHHHHHhcCCC
Q 003951 571 PVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGG-RNGNKPDAKGWSPKAPAEQPVN-----RSMYDLLLSYENR 639 (784)
Q Consensus 571 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~-----~~i~~lL~~~~~~ 639 (784)
|++++..|..|.||||.|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+ .+++++|+++|++
T Consensus 96 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~ 170 (201)
T 3hra_A 96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD 170 (201)
T ss_dssp CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC
T ss_pred CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC
Confidence 8899999999999999999999999999999999 9999999999999999999887 9999999999988
No 95
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.57 E-value=3.8e-15 Score=149.10 Aligned_cols=128 Identities=15% Similarity=0.122 Sum_probs=111.9
Q ss_pred ccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCC
Q 003951 375 VYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYR 453 (784)
Q Consensus 375 ~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~ 453 (784)
-|+|...++.....+...++.+.|++|+.|+.+|+.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.+++.+.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~ 83 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE 83 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence 467888888899999999999999999999999999999999999999999 5578999999999999999999998876
Q ss_pred -CceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhcc
Q 003951 454 -PQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQES 502 (784)
Q Consensus 454 -~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~ 502 (784)
++.++++|.++|+++.|++++|.++++++|++...+++.+.+++.....
T Consensus 84 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~ 133 (213)
T 1o5l_A 84 PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSE 133 (213)
T ss_dssp CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999998876443
No 96
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.57 E-value=2.2e-15 Score=151.85 Aligned_cols=143 Identities=10% Similarity=0.009 Sum_probs=125.1
Q ss_pred hhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhh
Q 003951 371 IVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVL 450 (784)
Q Consensus 371 ~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l 450 (784)
+++++++|.+++++.+..++..++.+.|++|++|+.+|+.++.+|+|.+|.|+++...+|++.++..+.+|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG----- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC----- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence 467899999999999999999999999999999999999999999999999999866889999999999999999
Q ss_pred cCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 451 YYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 451 ~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
.+++++++|.++|+++.|++++|.++++.+|++...+++.+.+++.................++..++
T Consensus 76 --~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L 143 (222)
T 1ft9_A 76 --MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDLMFHDIKQRIAGFF 143 (222)
T ss_dssp --SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred --CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999877554433333334444444444
No 97
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.57 E-value=1e-15 Score=141.12 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHhhhhhhccccccccCCHHHHHHHHHcCcccccc-cCCeEEecCCCCCeEEEEEecEEEEEEeecCceeE
Q 003951 356 PKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFP-PKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKV 434 (784)
Q Consensus 356 p~~Lr~~i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~-~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~ 434 (784)
||+.|.+........+++++++|..++++.+..|+..++.+.|. +|++|+++|+.++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 44455554444556788999999999999999999999999999 999999999999999999999999984 55655
Q ss_pred EEEecCCCeeehhhhhcCCCceeEE-EEccceEEEEecHHHHHHHHHhcHH
Q 003951 435 LGKAVAGDAFGEIGVLYYRPQPFTV-RTTELSQILRLSRTSLMNSIQANME 484 (784)
Q Consensus 435 ~~~l~~G~~fGe~~~l~~~~~~~tv-~a~~~~~l~~l~~~~f~~ll~~~p~ 484 (784)
..+.+|++||+.+++.+.++.+++ +|.++|+++.|++++|.++++++++
T Consensus 79 -~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 79 -ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp -EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred -EEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 558999999999999999999999 9999999999999999999887664
No 98
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.57 E-value=3e-15 Score=141.22 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=85.1
Q ss_pred ccCCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCC
Q 003951 551 FLGPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPV 625 (784)
Q Consensus 551 ~~g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g 625 (784)
..|.||+|.|| .++.+ |+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 32 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 111 (153)
T 1awc_B 32 WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111 (153)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 34899999999 77777 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhcCCC
Q 003951 626 NRSMYDLLLSYENR 639 (784)
Q Consensus 626 ~~~i~~lL~~~~~~ 639 (784)
+.+++++|+++|++
T Consensus 112 ~~~~v~~Ll~~ga~ 125 (153)
T 1awc_B 112 HQEVVELLIKYGAD 125 (153)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999987
No 99
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.57 E-value=3.5e-15 Score=164.72 Aligned_cols=128 Identities=20% Similarity=0.349 Sum_probs=118.9
Q ss_pred HHHHHHhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecC
Q 003951 361 SSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVA 440 (784)
Q Consensus 361 ~~i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~ 440 (784)
.+-......+.++++++|++++++.+..|+..++.+.|.+|++|+++||.++.+|+|.+|.|+++...+|++.++..+.+
T Consensus 136 s~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~ 215 (416)
T 3tnp_B 136 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDN 215 (416)
T ss_dssp CHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEES
T ss_pred CHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecC
Confidence 33344556789999999999999999999999999999999999999999999999999999999878899999999999
Q ss_pred CCeeehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHH
Q 003951 441 GDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRI 488 (784)
Q Consensus 441 G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~ 488 (784)
|++|||.+++.+.|+.++++|.++|+++.|++++|..++..+|.....
T Consensus 216 G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~ 263 (416)
T 3tnp_B 216 RGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 263 (416)
T ss_dssp CCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSS
T ss_pred CCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHH
Confidence 999999999999999999999999999999999999999999986543
No 100
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.56 E-value=1.9e-16 Score=163.58 Aligned_cols=116 Identities=14% Similarity=0.078 Sum_probs=98.7
Q ss_pred CCCCCCCCCCCCCCCCC--------Ccccccccccc-----------------cCCCchhhhh-hcCcc----ccc---C
Q 003951 524 TIGSSLSARHQDYPYGD--------SSMWETRNLNF-----------------LGPQATDIEA-SKDQD----STA---C 570 (784)
Q Consensus 524 ~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~-----------------~g~~~l~~a~-~~~~~----ll~---~ 570 (784)
.+..|..|+||||+|.. .+++.|.+++. .|.||||+|| .++.+ |++ +
T Consensus 86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 165 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165 (260)
T ss_dssp BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 45556689999987432 34555666553 3889999999 67776 888 9
Q ss_pred CCCCCCCCCCCccHHHHHHHcCC---------HHHHHHHHhCCCCC-------CCCCCCCCCchhhhccCCChhHHHHHH
Q 003951 571 PVDVNSKVEDGQTELNAANQRGH---------IEMVKVLLEGGRNG-------NKPDAKGWSPKAPAEQPVNRSMYDLLL 634 (784)
Q Consensus 571 g~~~~~~d~~g~T~Lh~A~~~g~---------~~~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~~g~~~i~~lL~ 634 (784)
|+|+|.+|.+|+||||+|+..|+ .+++++|+++||++ +.+|..|+||||+|+..|+.+++++|+
T Consensus 166 ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 245 (260)
T 3jxi_A 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245 (260)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999998887 79999999999999 679999999999999999999999999
Q ss_pred hcCCC
Q 003951 635 SYENR 639 (784)
Q Consensus 635 ~~~~~ 639 (784)
++|+.
T Consensus 246 ~~g~~ 250 (260)
T 3jxi_A 246 RREIA 250 (260)
T ss_dssp HHHHH
T ss_pred HhCCC
Confidence 99976
No 101
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.56 E-value=9.6e-15 Score=150.00 Aligned_cols=148 Identities=18% Similarity=0.130 Sum_probs=128.1
Q ss_pred hhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhh
Q 003951 370 PIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIG 448 (784)
Q Consensus 370 ~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~ 448 (784)
.++.+...+..++++.++.+...++.+.|++|++|+.+|++++.+|+|.+|.|+++ ...+|++.++..+.+|++||+
T Consensus 9 ~~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-- 86 (250)
T 3e6c_C 9 DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-- 86 (250)
T ss_dssp CCCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--
T ss_pred hhhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--
Confidence 34455555689999999999999999999999999999999999999999999999 557899999999999999999
Q ss_pred hhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 449 VLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 449 ~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
++.+. ++++++|.++|+++.|++++|.++++++|++...+++.+.+++.................++..++
T Consensus 87 ~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L 157 (250)
T 3e6c_C 87 LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRILRLF 157 (250)
T ss_dssp CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 77788 999999999999999999999999999999999999999999887655444444445555554444
No 102
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.56 E-value=1.1e-15 Score=147.21 Aligned_cols=87 Identities=18% Similarity=0.123 Sum_probs=84.1
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.||+|+|| .++.+ |+++|+++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 36 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 115 (172)
T 3v30_A 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHV 115 (172)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 899999999 67777 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++|++
T Consensus 116 ~~v~~Ll~~ga~ 127 (172)
T 3v30_A 116 KCVEALLARGAD 127 (172)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999987
No 103
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.56 E-value=1.7e-15 Score=134.40 Aligned_cols=84 Identities=27% Similarity=0.279 Sum_probs=78.6
Q ss_pred cccCCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccC
Q 003951 550 NFLGPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQP 624 (784)
Q Consensus 550 ~~~g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 624 (784)
...|.+++|.|| .++.+ |+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 100 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence 334788999999 77777 8899999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHH
Q 003951 625 VNRSMYDLL 633 (784)
Q Consensus 625 g~~~i~~lL 633 (784)
|+.+++++|
T Consensus 101 ~~~~~~~~L 109 (110)
T 2zgd_A 101 GNEDLAEIL 109 (110)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 999999987
No 104
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.56 E-value=1e-15 Score=166.49 Aligned_cols=87 Identities=11% Similarity=-0.047 Sum_probs=67.3
Q ss_pred CCCchhhhh-hc--Ccc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCC-----CCCCCCCCCCchhh
Q 003951 553 GPQATDIEA-SK--DQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRN-----GNKPDAKGWSPKAP 620 (784)
Q Consensus 553 g~~~l~~a~-~~--~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~-----~~~~d~~g~tpl~~ 620 (784)
|.||||+|| .+ +.+ |+++|+|+|..|..|.||||+|+..|+.++|++|+++|++ +|.+|..|+||||+
T Consensus 138 g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~ 217 (364)
T 3ljn_A 138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217 (364)
T ss_dssp CCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH
T ss_pred CCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH
Confidence 677888777 44 444 7777888887777788888888888888888888877777 77777778888888
Q ss_pred hccCCChhHHHHHHhcCCC
Q 003951 621 AEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 621 A~~~g~~~i~~lL~~~~~~ 639 (784)
|+..|+.+++++|+++|++
T Consensus 218 A~~~g~~~~v~~Ll~~gad 236 (364)
T 3ljn_A 218 AILINWEDVAMRFVEMGID 236 (364)
T ss_dssp HHTTTCHHHHHHHHTTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 8888888888888877776
No 105
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.56 E-value=1.6e-15 Score=169.30 Aligned_cols=129 Identities=19% Similarity=0.160 Sum_probs=112.3
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCC
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPV 572 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~ 572 (784)
+....+..|+ +++++..|..|+||+|.|.. .+++.+.+++.. |.||+|+|| .++.+ |+++|+
T Consensus 256 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 335 (437)
T 1n11_A 256 GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335 (437)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC
T ss_pred CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Confidence 4445555555 78899999999999998432 346667776655 899999999 67777 999999
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 573 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|+|.+|..|+||||+|+..|+.++|++|+++||+++.+|..|+||+++|+..|+.+++++|......
T Consensus 336 d~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~~ 402 (437)
T 1n11_A 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402 (437)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999877654
No 106
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.56 E-value=3.4e-16 Score=163.02 Aligned_cols=113 Identities=17% Similarity=0.134 Sum_probs=96.5
Q ss_pred CCCCCCCCCCCCCC--------Ccccccccccc-----------------cCCCchhhhh-hcCcc----ccc---CCCC
Q 003951 527 SSLSARHQDYPYGD--------SSMWETRNLNF-----------------LGPQATDIEA-SKDQD----STA---CPVD 573 (784)
Q Consensus 527 ~d~~g~t~l~~~~~--------~~~~~~~~~~~-----------------~g~~~l~~a~-~~~~~----ll~---~g~~ 573 (784)
.|..|+||||+|.. .+++.|.+++. .|.||||+|| .++.+ |++ +|+|
T Consensus 97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad 176 (273)
T 2pnn_A 97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176 (273)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC
Confidence 45678888876321 23455555543 4789999999 67766 888 9999
Q ss_pred CCCCCCCCccHHHHHHHcCC---------HHHHHHHHhCCCCCC-------CCCCCCCCchhhhccCCChhHHHHHHhcC
Q 003951 574 VNSKVEDGQTELNAANQRGH---------IEMVKVLLEGGRNGN-------KPDAKGWSPKAPAEQPVNRSMYDLLLSYE 637 (784)
Q Consensus 574 ~~~~d~~g~T~Lh~A~~~g~---------~~~v~~Ll~~ga~~~-------~~d~~g~tpl~~A~~~g~~~i~~lL~~~~ 637 (784)
+|.+|.+|+||||+|+..|+ .+++++|+++||+++ .+|..|+||||+|+..|+.+++++|+++|
T Consensus 177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 256 (273)
T 2pnn_A 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE 256 (273)
T ss_dssp TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCC
Confidence 99999999999999999998 899999999999997 48999999999999999999999999999
Q ss_pred CC
Q 003951 638 NR 639 (784)
Q Consensus 638 ~~ 639 (784)
++
T Consensus 257 a~ 258 (273)
T 2pnn_A 257 IH 258 (273)
T ss_dssp TC
T ss_pred CC
Confidence 95
No 107
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.56 E-value=1.9e-15 Score=139.51 Aligned_cols=87 Identities=32% Similarity=0.328 Sum_probs=83.8
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
+.+++|.|| .|+.+ |+++|+++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~ 93 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHL 93 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Confidence 678999999 78877 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++|++
T Consensus 94 ~~v~~Ll~~g~~ 105 (136)
T 2jab_A 94 EIAEVLLKHGAD 105 (136)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999987
No 108
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.56 E-value=4.8e-16 Score=160.49 Aligned_cols=119 Identities=16% Similarity=0.109 Sum_probs=99.4
Q ss_pred cCCCCCCC----CCCCCCCCCCC---C--------Cccccccc-----------cc---ccCCCchhhhh-hcCcc----
Q 003951 521 GGPTIGSS----LSARHQDYPYG---D--------SSMWETRN-----------LN---FLGPQATDIEA-SKDQD---- 566 (784)
Q Consensus 521 g~~~~~~d----~~g~t~l~~~~---~--------~~~~~~~~-----------~~---~~g~~~l~~a~-~~~~~---- 566 (784)
+++.+..+ ..|+||||+|. . .+++.+.+ +. ..|.||||+|| .|+.+
T Consensus 32 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~ 111 (260)
T 3jxi_A 32 KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVEL 111 (260)
T ss_dssp TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHH
T ss_pred CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 56666554 66999999543 1 23444322 11 14899999999 67777
Q ss_pred cccCCCCCCCCC--------------CCCccHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCCchhhhccCCC---
Q 003951 567 STACPVDVNSKV--------------EDGQTELNAANQRGHIEMVKVLLE---GGRNGNKPDAKGWSPKAPAEQPVN--- 626 (784)
Q Consensus 567 ll~~g~~~~~~d--------------~~g~T~Lh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~tpl~~A~~~g~--- 626 (784)
|+++|+++|..| ..|.||||+|+..|+.++|++|++ +|++++.+|..|+||||+|+..|+
T Consensus 112 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~ 191 (260)
T 3jxi_A 112 LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTR 191 (260)
T ss_dssp HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSH
T ss_pred HHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCch
Confidence 999999999999 689999999999999999999999 999999999999999999998887
Q ss_pred ------hhHHHHHHhcCCC
Q 003951 627 ------RSMYDLLLSYENR 639 (784)
Q Consensus 627 ------~~i~~lL~~~~~~ 639 (784)
.+++++|+++|++
T Consensus 192 ~~~~~~~~~v~~Ll~~ga~ 210 (260)
T 3jxi_A 192 ENTKFVTKMYDLLLIKCAK 210 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcc
Confidence 6999999999987
No 109
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.56 E-value=1.2e-15 Score=140.97 Aligned_cols=86 Identities=16% Similarity=0.093 Sum_probs=83.0
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCCchhhhccCCC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAK-GWSPKAPAEQPVN 626 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-g~tpl~~A~~~g~ 626 (784)
|.||+|.|| .++.+ |+++|+++|.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |+||||+|+..|+
T Consensus 12 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 90 (136)
T 1d9s_A 12 SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGF 90 (136)
T ss_dssp CSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTC
T ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCC
Confidence 899999999 67777 899999999999999999999999 9999999999999999999999 9999999999999
Q ss_pred hhHHHHHHhcCCC
Q 003951 627 RSMYDLLLSYENR 639 (784)
Q Consensus 627 ~~i~~lL~~~~~~ 639 (784)
.+++++|+++|++
T Consensus 91 ~~~v~~Ll~~ga~ 103 (136)
T 1d9s_A 91 LDTLVVLHRAGAR 103 (136)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999987
No 110
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.56 E-value=1.3e-15 Score=159.84 Aligned_cols=127 Identities=17% Similarity=0.037 Sum_probs=107.3
Q ss_pred hhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCC
Q 003951 512 PGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVD 573 (784)
Q Consensus 512 ~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~ 573 (784)
....++.|+ |++++..|.+|+||||+|.. .+++.+.+++.. |.||+|+|| .++.+ |+++|++
T Consensus 71 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 150 (285)
T 3d9h_A 71 HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 150 (285)
T ss_dssp CHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC
Confidence 344445555 77888899999999998432 346667777655 889999999 67776 8899999
Q ss_pred CCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 574 VNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 574 ~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
++..+ +|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.|++
T Consensus 151 ~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 215 (285)
T 3d9h_A 151 VQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215 (285)
T ss_dssp SSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC
Confidence 98654 599999999999999999999999999999999999999999999999999999999987
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.55 E-value=3.8e-15 Score=168.99 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=81.0
Q ss_pred cCCCchhhhh----hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhcc
Q 003951 552 LGPQATDIEA----SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQ 623 (784)
Q Consensus 552 ~g~~~l~~a~----~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 623 (784)
.|.||||+|| .++.+ |+++|+|+|.+|.+|+||||+||..|+.++|++|+++|||++.+|..|+||||+|+.
T Consensus 170 ~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 249 (497)
T 3lvq_E 170 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249 (497)
T ss_dssp SCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHH
T ss_pred ccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 3677788885 34455 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhcCCC
Q 003951 624 PVNRSMYDLLLSYENR 639 (784)
Q Consensus 624 ~g~~~i~~lL~~~~~~ 639 (784)
.||.+++++|+++|++
T Consensus 250 ~~~~~~~~~Ll~~ga~ 265 (497)
T 3lvq_E 250 KHHKECEELLEQAQAG 265 (497)
T ss_dssp TTCHHHHHHHHHTCC-
T ss_pred cCCHHHHHHHHHhCCC
Confidence 9999999999999998
No 112
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.55 E-value=1.6e-15 Score=163.05 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=98.6
Q ss_pred cCCCCCCCCCCCCCCCC----CCC--------Cccccccccccc---CCCchhhhh-hcCcc----ccc-CCCCCCCCCC
Q 003951 521 GGPTIGSSLSARHQDYP----YGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STA-CPVDVNSKVE 579 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~----~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~-~g~~~~~~d~ 579 (784)
|++++..|..|+|++|. +.. .+++.|.+++.. |.||||.|| .++.+ |+. .|+++|.+|.
T Consensus 192 gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~ 271 (337)
T 4g8k_A 192 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 271 (337)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCT
T ss_pred CCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCC
Confidence 78899999999999874 111 246677787766 899999999 66666 554 6899999999
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 580 DGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 580 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|+||||+|+..|+.++|++|+++|||+|.+ ||||.|+..|+.+++++|+++||+
T Consensus 272 ~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~ 326 (337)
T 4g8k_A 272 DGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAK 326 (337)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCC
Confidence 9999999999999999999999999999764 599999999999999999999998
No 113
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.55 E-value=2.3e-15 Score=152.88 Aligned_cols=128 Identities=19% Similarity=0.116 Sum_probs=110.2
Q ss_pred hhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCC-C
Q 003951 512 PGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACP-V 572 (784)
Q Consensus 512 ~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g-~ 572 (784)
....++.|+ |++++..|..|+||+|.|.. .+++.+.+++.. |.+|+|.|+ .++.+ |+++| +
T Consensus 23 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~ 102 (237)
T 3b7b_A 23 HVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102 (237)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred cHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Confidence 344455555 88899999999999998432 346666666554 899999999 67766 88888 8
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 573 DVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 573 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+||||.|+..|+.+++++|+++|++
T Consensus 103 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 169 (237)
T 3b7b_A 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169 (237)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC
T ss_pred CcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999987
No 114
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.55 E-value=5.6e-15 Score=141.92 Aligned_cols=98 Identities=27% Similarity=0.286 Sum_probs=89.7
Q ss_pred ccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q 003951 542 SMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAK 613 (784)
Q Consensus 542 ~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~ 613 (784)
+++.+.+++.. |.|++|.|| .++.+ |+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..
T Consensus 33 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 112 (169)
T 2y1l_E 33 LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME 112 (169)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence 45566666544 899999999 67776 89999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhccCCChhHHHHHHhcCCC
Q 003951 614 GWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 614 g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|+||||+|+..|+.+++++|+++|++
T Consensus 113 g~t~L~~A~~~~~~~~v~~Ll~~g~~ 138 (169)
T 2y1l_E 113 GHTPLHLAAMFGHLEIVEVLLKNGAD 138 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999987
No 115
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.55 E-value=3.2e-16 Score=157.92 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=72.0
Q ss_pred CCCchhhhh-hcCcc----cccC-CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCC
Q 003951 553 GPQATDIEA-SKDQD----STAC-PVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVN 626 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~-g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~ 626 (784)
|.||||+|| .++.+ |+++ |+++|.+|..|+||||+|+..|+.++|++|+++||+++.+|..|+||||+|+..|+
T Consensus 106 g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 185 (222)
T 3ehr_A 106 GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC 185 (222)
T ss_dssp SCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhH
Confidence 556677788 66666 7787 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCC
Q 003951 627 RSMYDLLLSYENR 639 (784)
Q Consensus 627 ~~i~~lL~~~~~~ 639 (784)
.++++.|++.++.
T Consensus 186 ~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 186 ASLLKKKQGTDAV 198 (222)
T ss_dssp HHHHC--------
T ss_pred HHHHHHHhccchh
Confidence 9999999999987
No 116
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.55 E-value=4.6e-15 Score=141.12 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=89.6
Q ss_pred ccccccccccc---CCCchhhhhhcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 003951 542 SMWETRNLNFL---GPQATDIEASKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKG 614 (784)
Q Consensus 542 ~~~~~~~~~~~---g~~~l~~a~~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g 614 (784)
+++.+.+++.. |.||+|.|+.++.+ |+++|+++|.+|..|.||||.|+..|+.+++++|+++|++++.+|..|
T Consensus 24 Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 103 (162)
T 1ihb_A 24 LLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG 103 (162)
T ss_dssp HTTSCCCTTCCCTTSCCHHHHCCSSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred HHhCCCCccccCccCccHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 34555555544 89999999987666 899999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccCCChhHHHHHHhcCCC
Q 003951 615 WSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 615 ~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+||||+|+..|+.+++++|+++|+.
T Consensus 104 ~t~L~~A~~~~~~~~v~~Ll~~g~~ 128 (162)
T 1ihb_A 104 NLPLHLAAKEGHLRVVEFLVKHTAS 128 (162)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHccCC
Confidence 9999999999999999999999986
No 117
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.55 E-value=2.4e-15 Score=162.00 Aligned_cols=129 Identities=18% Similarity=0.099 Sum_probs=104.6
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCCCc-----------------------------ccc---cccccccCCCc
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGDSS-----------------------------MWE---TRNLNFLGPQA 556 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~~~-----------------------------~~~---~~~~~~~g~~~ 556 (784)
+....++.|+ |++++..+..|+||+|.+.... +.. ....+..|.+|
T Consensus 135 ~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~ 214 (351)
T 3utm_A 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETA 214 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCH
T ss_pred CCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCH
Confidence 3445555555 7888888888888877653210 000 00112338899
Q ss_pred hhhhhhc-C---cc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChh
Q 003951 557 TDIEASK-D---QD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRS 628 (784)
Q Consensus 557 l~~a~~~-~---~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~ 628 (784)
+|.|+.. + .+ |++.|+++|.+|.+|+||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+
T Consensus 215 L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~ 294 (351)
T 3utm_A 215 LHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQ 294 (351)
T ss_dssp HHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 9999943 2 22 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC
Q 003951 629 MYDLLLSYENR 639 (784)
Q Consensus 629 i~~lL~~~~~~ 639 (784)
++++|+++|++
T Consensus 295 ~v~~Ll~~gad 305 (351)
T 3utm_A 295 TCRLLLSYGSD 305 (351)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 99999999988
No 118
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.55 E-value=6.6e-15 Score=140.64 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=83.9
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.||+|.|| .++.+ |+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 42 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 121 (165)
T 3twr_A 42 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121 (165)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 789999999 67766 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++|++
T Consensus 122 ~~v~~Ll~~ga~ 133 (165)
T 3twr_A 122 EICKLLLQHGAD 133 (165)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999987
No 119
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.55 E-value=2.4e-15 Score=151.75 Aligned_cols=128 Identities=17% Similarity=0.088 Sum_probs=105.8
Q ss_pred hhhhhhhhc--cCCCC-CCCCCCCCCCCCCCC--------Cccccc--ccccc----cCCCchhhhh-hcCcc----ccc
Q 003951 512 PGIILHECI--GGPTI-GSSLSARHQDYPYGD--------SSMWET--RNLNF----LGPQATDIEA-SKDQD----STA 569 (784)
Q Consensus 512 ~~~~l~~Ll--g~~~~-~~d~~g~t~l~~~~~--------~~~~~~--~~~~~----~g~~~l~~a~-~~~~~----ll~ 569 (784)
....++.++ +.++. ..|.+|+||+|+|.. .++..+ .+++. .|.||+|.|| .++.+ |++
T Consensus 14 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 93 (228)
T 2dzn_A 14 EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93 (228)
T ss_dssp CHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHS
T ss_pred CHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 344445555 44433 378899999998432 345555 34333 3899999999 67777 889
Q ss_pred CC--CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcC-CC
Q 003951 570 CP--VDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYE-NR 639 (784)
Q Consensus 570 ~g--~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~-~~ 639 (784)
+| ++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.| ++
T Consensus 94 ~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 166 (228)
T 2dzn_A 94 RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA 166 (228)
T ss_dssp SSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred CCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 98 899999999999999999999999999999999999999999999999999999999999999999 54
No 120
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.54 E-value=3.1e-15 Score=155.93 Aligned_cols=112 Identities=22% Similarity=0.163 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCCC--------Ccccc-ccccccc---CCCchhhhh-hcC----cc----cccCCCCCCCCCCCCccHHH
Q 003951 528 SLSARHQDYPYGD--------SSMWE-TRNLNFL---GPQATDIEA-SKD----QD----STACPVDVNSKVEDGQTELN 586 (784)
Q Consensus 528 d~~g~t~l~~~~~--------~~~~~-~~~~~~~---g~~~l~~a~-~~~----~~----ll~~g~~~~~~d~~g~T~Lh 586 (784)
+..|.||+|.+.. .+++. +.+++.. |.+|+|.|+ .++ .+ |+++|+++|.+|..|.||||
T Consensus 145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 6678999887432 23433 6666554 899999999 555 23 88999999999999999999
Q ss_pred HHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 587 AANQRGHIEMVKVLLE-GGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 587 ~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 225 ~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~ 278 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278 (285)
T ss_dssp HHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred HHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999 8999999999999999999999999999999999998
No 121
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.54 E-value=5.4e-16 Score=166.18 Aligned_cols=119 Identities=14% Similarity=-0.087 Sum_probs=104.3
Q ss_pred cCCCCC-CCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhhh-cC---cc----cccCC-CCCCCCCC
Q 003951 521 GGPTIG-SSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEAS-KD---QD----STACP-VDVNSKVE 579 (784)
Q Consensus 521 g~~~~~-~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~~-~~---~~----ll~~g-~~~~~~d~ 579 (784)
|++++. .|.+|+||||+|.. .+++.|.+++.. |.||||+||. ++ .+ |++.| ++++.+|.
T Consensus 120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~ 199 (327)
T 1sw6_A 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS 199 (327)
T ss_dssp CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC
Confidence 789999 89999999998432 457788888766 8999999994 44 23 77776 78999999
Q ss_pred CCccHHHHHHH----cCCHHHHHHHHhCCC---------------------------------------------CCCCC
Q 003951 580 DGQTELNAANQ----RGHIEMVKVLLEGGR---------------------------------------------NGNKP 610 (784)
Q Consensus 580 ~g~T~Lh~A~~----~g~~~~v~~Ll~~ga---------------------------------------------~~~~~ 610 (784)
.|+||||+|+. .|+.+++++|++.|+ ++|.+
T Consensus 200 ~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~ 279 (327)
T 1sw6_A 200 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 279 (327)
T ss_dssp TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCC
Confidence 99999999999 999999999998854 68889
Q ss_pred CCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 611 DAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 611 d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|..|+||||+|+..|+.+++++|+++|++
T Consensus 280 d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad 308 (327)
T 1sw6_A 280 DSNGDTCLNIAARLGNISIVDALLDYGAD 308 (327)
T ss_dssp CTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999998
No 122
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.54 E-value=4.1e-14 Score=148.74 Aligned_cols=132 Identities=18% Similarity=0.287 Sum_probs=120.2
Q ss_pred HhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeee
Q 003951 366 YLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 366 ~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 445 (784)
....++++++++|.+++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +| ..+..+.+|++||
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g--~~~~~l~~G~~fG 110 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NN--EWATSVGEGGSFG 110 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TT--EEEEEECTTCEEC
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CC--eEEEEcCCCCccc
Confidence 4456789999999999999999999999999999999999999999999999999999986 45 5689999999999
Q ss_pred hhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhc
Q 003951 446 EIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQE 501 (784)
Q Consensus 446 e~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~ 501 (784)
|.+++.+.++.++++|.++|+++.|++++|.+++..+|.....++..+.+++....
T Consensus 111 e~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~ 166 (291)
T 2qcs_B 111 ELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 166 (291)
T ss_dssp GGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGGGT
T ss_pred hHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchHhh
Confidence 99999999999999999999999999999999999999998887777766554433
No 123
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.54 E-value=2.1e-15 Score=157.41 Aligned_cols=117 Identities=17% Similarity=0.050 Sum_probs=101.8
Q ss_pred CCCCCCCCCCCCCCCCCC--------Ccccccc-ccccc---CCCchhhhhh------cCcc----cccCCCCCCCCCCC
Q 003951 523 PTIGSSLSARHQDYPYGD--------SSMWETR-NLNFL---GPQATDIEAS------KDQD----STACPVDVNSKVED 580 (784)
Q Consensus 523 ~~~~~d~~g~t~l~~~~~--------~~~~~~~-~~~~~---g~~~l~~a~~------~~~~----ll~~g~~~~~~d~~ 580 (784)
.+|..|.+|+||||+|.. .+++.+. +++.. |.||+|+|+. ++.+ |++.|++++..|..
T Consensus 103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~ 182 (276)
T 4hbd_A 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA 182 (276)
T ss_dssp HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTT
T ss_pred cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCC
Confidence 378889999999998442 3456665 55554 8999999983 2222 88999999999999
Q ss_pred CccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHh-cCCC
Q 003951 581 GQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLS-YENR 639 (784)
Q Consensus 581 g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~-~~~~ 639 (784)
|+||||+|+..|+.++|++|+++|||+|.+|..|+||||+|+..|+.+++++|++ .|++
T Consensus 183 g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad 242 (276)
T 4hbd_A 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242 (276)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999 7877
No 124
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.54 E-value=5.1e-16 Score=162.92 Aligned_cols=132 Identities=15% Similarity=0.065 Sum_probs=107.7
Q ss_pred CCCCChhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---C-CCchhhhh-hcCcc----c
Q 003951 507 YPTTDPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---G-PQATDIEA-SKDQD----S 567 (784)
Q Consensus 507 ~~~~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g-~~~l~~a~-~~~~~----l 567 (784)
+...+....++.|+ |++++..|..|+||||+|.. .+++.|.+++.. | .||+|+|+ .++.+ |
T Consensus 69 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L 148 (285)
T 3kea_A 69 AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF 148 (285)
T ss_dssp HTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 34445556666666 88999999999999987432 346667777765 5 69999999 66666 8
Q ss_pred ccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCc-hhhhccCCChhHHHHHHhcCCC
Q 003951 568 TACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSP-KAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 568 l~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp-l~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+++|+++... ..|.||||+|+..|+.++|++|+++||+++.+|..|+|| ||+|+..|+.+++++|+++|++
T Consensus 149 l~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad 220 (285)
T 3kea_A 149 LSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220 (285)
T ss_dssp HTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC
T ss_pred HhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Confidence 8898877333 289999999999999999999999999999999999998 9999999999999999999988
No 125
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.54 E-value=8.9e-15 Score=141.90 Aligned_cols=87 Identities=17% Similarity=0.090 Sum_probs=84.1
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.||+|.|| .++.+ |+++|+++|..|.+|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 39 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~ 118 (179)
T 3f6q_A 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118 (179)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 899999999 67766 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++|++
T Consensus 119 ~~v~~Ll~~ga~ 130 (179)
T 3f6q_A 119 QVAEDLVANGAL 130 (179)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHCCCC
Confidence 999999999988
No 126
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.54 E-value=2.3e-15 Score=152.75 Aligned_cols=126 Identities=19% Similarity=0.127 Sum_probs=106.8
Q ss_pred hhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCc-c----cccCCCCC
Q 003951 514 IILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQ-D----STACPVDV 574 (784)
Q Consensus 514 ~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~-~----ll~~g~~~ 574 (784)
..++.|+ |++++..|..|+||+|.|.. .+++.+.+++.. |.+|+|.|+ .++. + |++.|+++
T Consensus 90 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~ 169 (240)
T 3eu9_A 90 SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT
T ss_pred HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCc
Confidence 3444444 78899999999999987432 345666666654 889999999 6653 3 89999999
Q ss_pred CCCCC-CCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 575 NSKVE-DGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 575 ~~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..|+.+++++|++++++
T Consensus 170 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 99997 999999999999999999999999999999999999999999999999999999999987
No 127
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.53 E-value=1.5e-15 Score=165.30 Aligned_cols=117 Identities=9% Similarity=-0.075 Sum_probs=102.9
Q ss_pred CCCCCCCCCCCCCCCCCC----------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCC-----CCCCCC
Q 003951 523 PTIGSSLSARHQDYPYGD----------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVD-----VNSKVE 579 (784)
Q Consensus 523 ~~~~~d~~g~t~l~~~~~----------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~-----~~~~d~ 579 (784)
+.+..|..|+||||+|.. .+++.|.+++.. |.||+|+|| .++.+ |+++|++ +|..|.
T Consensus 130 ~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 209 (364)
T 3ljn_A 130 GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209 (364)
T ss_dssp TTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT
T ss_pred ccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC
Confidence 445577789999987321 346667777665 899999999 67776 8999998 999999
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 580 DGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 580 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
.|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+..|+.+++++|+++|+.
T Consensus 210 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 210 QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269 (364)
T ss_dssp TCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999999999999999999999999999876
No 128
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.53 E-value=2.3e-14 Score=132.31 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHH
Q 003951 198 CTKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFD 277 (784)
Q Consensus 198 ~~~li~~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~ 277 (784)
+...++.++.++++.++++|.++...+ +. ....|.+|+||+++|+|||||||++|.|+.+++++
T Consensus 8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~-~~---------------~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~ 71 (139)
T 3eff_K 8 AGAATVLLVIVLLAGSYLAVLAERGAP-GA---------------QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVA 71 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCT-TC---------------CCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-Cc---------------ccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHH
Confidence 444455556666777888887764221 11 11248999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhH
Q 003951 278 IFYMLFNLGLTSYIIGNMTNLVVHWTS 304 (784)
Q Consensus 278 i~~~l~g~~~~a~~ig~i~~ii~~~~~ 304 (784)
++++++|+++++++++.+++.+.+..+
T Consensus 72 ~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 72 VVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987765443
No 129
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.5e-14 Score=147.87 Aligned_cols=129 Identities=19% Similarity=0.363 Sum_probs=116.7
Q ss_pred hhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhh
Q 003951 369 FPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIG 448 (784)
Q Consensus 369 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~ 448 (784)
.++++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +|+. +..+.+|++|||.+
T Consensus 6 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~--~~~~~~g~~fGe~~ 81 (246)
T 3of1_A 6 EKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK--VNSSGPGSSFGELA 81 (246)
T ss_dssp HHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC--CEEECTTCEECHHH
T ss_pred HHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE--EEecCCCCeeehhH
Confidence 5688999999999999999999999999999999999999999999999999999984 4443 68899999999999
Q ss_pred hhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhc
Q 003951 449 VLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQE 501 (784)
Q Consensus 449 ~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~ 501 (784)
++.+.|++++++|.++|+++.|++++|.+++..+|.....+...+.+++....
T Consensus 82 l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~ 134 (246)
T 3of1_A 82 LMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLK 134 (246)
T ss_dssp HHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGT
T ss_pred HhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhh
Confidence 99999999999999999999999999999999999887777766666654433
No 130
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.53 E-value=5.5e-14 Score=147.75 Aligned_cols=128 Identities=15% Similarity=0.285 Sum_probs=115.0
Q ss_pred hhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEE-eecC-ceeEEEEecCCCeee
Q 003951 368 FFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIH-YVDG-QDKVLGKAVAGDAFG 445 (784)
Q Consensus 368 ~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~g-~~~~~~~l~~G~~fG 445 (784)
...+++++++|..++...+..++..++.+.|++|+.|+++|+.++.+|+|.+|.|+++. ..+| ++..+..+++|++||
T Consensus 155 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fG 234 (291)
T 2qcs_B 155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFG 234 (291)
T ss_dssp HHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEEC
T ss_pred HHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEec
Confidence 34567788999999999999999999999999999999999999999999999999984 3344 457899999999999
Q ss_pred hhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHH
Q 003951 446 EIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFR 495 (784)
Q Consensus 446 e~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~ 495 (784)
|.+++.+.|++++++|.++|+++.|++++|.+++..+|++...+++.+..
T Consensus 235 e~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~~ 284 (291)
T 2qcs_B 235 EIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNS 284 (291)
T ss_dssp SGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHHH
T ss_pred HHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987766555443
No 131
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.52 E-value=1.8e-14 Score=159.13 Aligned_cols=135 Identities=13% Similarity=0.239 Sum_probs=112.1
Q ss_pred hhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEE-eec------CceeEEEEec
Q 003951 367 LFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIH-YVD------GQDKVLGKAV 439 (784)
Q Consensus 367 ~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~------g~~~~~~~l~ 439 (784)
++..+++++++|..++.+.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. ..+ |++.++..++
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~ 343 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCF 343 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEEC
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeC
Confidence 456788899999999999999999999999999999999999999999999999999993 333 7788999999
Q ss_pred CCCeeehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhc
Q 003951 440 AGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQE 501 (784)
Q Consensus 440 ~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~ 501 (784)
+|++|||.+++.+.++.++++|.++|+++.|++++|.+++..+|++...++..+.+++....
T Consensus 344 ~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~~~~ 405 (416)
T 3tnp_B 344 RGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALF 405 (416)
T ss_dssp TTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC------------
T ss_pred CCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998888887777776543
No 132
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.52 E-value=8.8e-15 Score=132.45 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=67.2
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.||+|+|| .++.+ |+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|...++.
T Consensus 40 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 119 (123)
T 3aaa_C 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK 119 (123)
T ss_dssp SSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHH
Confidence 556688888 66666 8899999999999999999999999999999999999999999999999999999654443
No 133
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.52 E-value=6.7e-15 Score=149.00 Aligned_cols=87 Identities=22% Similarity=0.236 Sum_probs=83.5
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.+++|.|| .|+.+ |++.|+++|.+|.+|+||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..|+.
T Consensus 21 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~ 100 (229)
T 2vge_A 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT 100 (229)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 567899999 78877 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++|++
T Consensus 101 ~~v~~Ll~~ga~ 112 (229)
T 2vge_A 101 VICMALVQHGAA 112 (229)
T ss_dssp HHHHHHHTTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999988
No 134
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.52 E-value=6.2e-15 Score=143.99 Aligned_cols=88 Identities=17% Similarity=0.100 Sum_probs=79.2
Q ss_pred cCCCchhhhh-hcCc----c----cccCCCCCCCCCCCCccHHHHHHHcCC------HHHHHHHHhCCCCCCCCCCCCC-
Q 003951 552 LGPQATDIEA-SKDQ----D----STACPVDVNSKVEDGQTELNAANQRGH------IEMVKVLLEGGRNGNKPDAKGW- 615 (784)
Q Consensus 552 ~g~~~l~~a~-~~~~----~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~------~~~v~~Ll~~ga~~~~~d~~g~- 615 (784)
.|.||||+|| .++. + |+++|+|+|.+|.+|+||||+|+..|+ .++|++|+++|||+|.+|..|+
T Consensus 37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~t 116 (186)
T 3t8k_A 37 LKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKI 116 (186)
T ss_dssp HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTB
T ss_pred CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCc
Confidence 3999999999 4542 1 899999999999999999999999987 6899999999999999999999
Q ss_pred CchhhhccCC-----ChhHHHHHHh-cCCC
Q 003951 616 SPKAPAEQPV-----NRSMYDLLLS-YENR 639 (784)
Q Consensus 616 tpl~~A~~~g-----~~~i~~lL~~-~~~~ 639 (784)
||||+|+..| +.+++++|++ +|++
T Consensus 117 tpLh~A~~~~~~~~~~~~iv~~Ll~~~gad 146 (186)
T 3t8k_A 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQ 146 (186)
T ss_dssp CTTGGGGGCCSCHHHHHHHHHHHHTSTTCC
T ss_pred hHHHHHHHcCCChhhHHHHHHHHHHhcCCC
Confidence 9999999955 4569999999 9988
No 135
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.8e-14 Score=144.15 Aligned_cols=118 Identities=19% Similarity=0.357 Sum_probs=108.6
Q ss_pred hhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeeh
Q 003951 367 LFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGE 446 (784)
Q Consensus 367 ~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe 446 (784)
+...+++++++|..++++.+..++..++.+.|.+|+.|+++|+.++.+|+|.+|.|+++...+ + .+..+.+|++|||
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~--~-~~~~l~~g~~fGe 198 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ--G-VINKLKDHDYFGE 198 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTT--E-EEEEEETTCEECH
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCC--c-eEEEcCCCCcccH
Confidence 345677889999999999999999999999999999999999999999999999999985322 2 7899999999999
Q ss_pred hhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHH
Q 003951 447 IGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGR 487 (784)
Q Consensus 447 ~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~ 487 (784)
.+++.+.|+.++++|.++|+++.|++++|.+++..+|++.+
T Consensus 199 ~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 199 VALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred HHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 99999999999999999999999999999999999998654
No 136
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.51 E-value=7.3e-14 Score=142.77 Aligned_cols=138 Identities=16% Similarity=0.245 Sum_probs=118.4
Q ss_pred HHHHHHHHHcCc---ccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCCCc--e
Q 003951 383 HDFLFQLVSDMD---AEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYRPQ--P 456 (784)
Q Consensus 383 ~~~l~~l~~~~~---~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~--~ 456 (784)
+++++.|..... .+.|++|++|+.+|+.++.+|+|.+|.|+++ ...+|++.++..+.+|++||+.+++.+.+. .
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 677888888888 9999999999999999999999999999999 567899999999999999999999998874 5
Q ss_pred eEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 457 FTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 457 ~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
++++|.++|+++.|++++|.++++++|++...+++.+.+++.................++..++
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L 173 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFL 173 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999998877554433333344444444333
No 137
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.51 E-value=4e-14 Score=154.58 Aligned_cols=133 Identities=19% Similarity=0.281 Sum_probs=120.9
Q ss_pred HHhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCee
Q 003951 365 HYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAF 444 (784)
Q Consensus 365 ~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 444 (784)
.....++++++++|++++++.+..|+..++.+.|.+|++|+++||.++.+|+|.+|.|+++. +| ..+..+.+|++|
T Consensus 125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~--~~v~~l~~G~~f 200 (381)
T 4din_B 125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NG--EWVTNISEGGSF 200 (381)
T ss_dssp HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TT--EEEEEEESSCCB
T ss_pred HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CC--eEeeeCCCCCEE
Confidence 34556889999999999999999999999999999999999999999999999999999985 44 467889999999
Q ss_pred ehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhc
Q 003951 445 GEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQE 501 (784)
Q Consensus 445 Ge~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~ 501 (784)
||.+++.+.|+.++++|.++|+++.|++++|..++..+|.....++..+.+++....
T Consensus 201 Ge~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f~ 257 (381)
T 4din_B 201 GELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 257 (381)
T ss_dssp CGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTTT
T ss_pred EchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHHH
Confidence 999999999999999999999999999999999999999998888777777655443
No 138
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.51 E-value=2.9e-15 Score=155.93 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=98.0
Q ss_pred CCCCCCCCCCCCCC-----C------Cccccccc-------c-------cccCCCchhhhh-hcCcc----cccCCCCCC
Q 003951 526 GSSLSARHQDYPYG-----D------SSMWETRN-------L-------NFLGPQATDIEA-SKDQD----STACPVDVN 575 (784)
Q Consensus 526 ~~d~~g~t~l~~~~-----~------~~~~~~~~-------~-------~~~g~~~l~~a~-~~~~~----ll~~g~~~~ 575 (784)
..|..|+||||+|. . .+++.+.+ + +..|.||||+|| .++.+ |+++|+++|
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~ 128 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 34778999999864 2 23444432 1 224999999999 67777 999999999
Q ss_pred CCCC--------------CCccHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCCchhhhccCCC---------hhH
Q 003951 576 SKVE--------------DGQTELNAANQRGHIEMVKVLLE---GGRNGNKPDAKGWSPKAPAEQPVN---------RSM 629 (784)
Q Consensus 576 ~~d~--------------~g~T~Lh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~tpl~~A~~~g~---------~~i 629 (784)
..|. .|.||||+|+..|+.++|++|++ +|++++.+|..|+||||+|+..|+ .++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~ 208 (273)
T 2pnn_A 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208 (273)
T ss_dssp CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence 9997 79999999999999999999999 999999999999999999999998 799
Q ss_pred HHHHHhcCCC
Q 003951 630 YDLLLSYENR 639 (784)
Q Consensus 630 ~~lL~~~~~~ 639 (784)
+++|+++|++
T Consensus 209 v~~Ll~~ga~ 218 (273)
T 2pnn_A 209 YNEILILGAK 218 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 9999999987
No 139
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.51 E-value=8.7e-15 Score=142.62 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=82.3
Q ss_pred cCCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCchhhhccCC
Q 003951 552 LGPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPD-AKGWSPKAPAEQPV 625 (784)
Q Consensus 552 ~g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpl~~A~~~g 625 (784)
.|.||+|.|| .|+.+ |++ |+++|.+|.+|+||||+|+..|+.+++++|+++|+++|.+| ..|+||||+|+..|
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~ 121 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence 4789999999 67777 777 99999999999999999999999999999999999999998 89999999999999
Q ss_pred ChhHHHHHHhcCCC
Q 003951 626 NRSMYDLLLSYENR 639 (784)
Q Consensus 626 ~~~i~~lL~~~~~~ 639 (784)
+.+++++|+++|++
T Consensus 122 ~~~~v~~Ll~~ga~ 135 (183)
T 3deo_A 122 RPEVVEALVELGAD 135 (183)
T ss_dssp CHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHcCCC
Confidence 99999999999987
No 140
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.51 E-value=4.3e-14 Score=154.37 Aligned_cols=131 Identities=18% Similarity=0.294 Sum_probs=118.3
Q ss_pred hhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEe-ecCc-eeEEEEecCCCee
Q 003951 367 LFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHY-VDGQ-DKVLGKAVAGDAF 444 (784)
Q Consensus 367 ~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~-~~g~-~~~~~~l~~G~~f 444 (784)
++..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.. .+|+ +..+..+++|++|
T Consensus 245 ~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~f 324 (381)
T 4din_B 245 MYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYF 324 (381)
T ss_dssp HHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEE
T ss_pred HHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEe
Confidence 4456788899999999999999999999999999999999999999999999999999943 3343 5678999999999
Q ss_pred ehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 003951 445 GEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKL 497 (784)
Q Consensus 445 Ge~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l 497 (784)
||.+++.+.|+.++++|.++|+++.|++++|.+++..+|++.+..+..+.+.+
T Consensus 325 Ge~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 325 GEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp CTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred chHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887777666654
No 141
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.50 E-value=4e-15 Score=162.46 Aligned_cols=128 Identities=20% Similarity=0.140 Sum_probs=106.7
Q ss_pred hhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccc---cccccc---CCCchhhhh-hc---Ccc----c
Q 003951 512 PGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWET---RNLNFL---GPQATDIEA-SK---DQD----S 567 (784)
Q Consensus 512 ~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~---~~~~~~---g~~~l~~a~-~~---~~~----l 567 (784)
....++.|+ |++++..|..|+||+|+|.. .++..+ .+++.. |.||+|+|| .+ +.+ |
T Consensus 178 ~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~L 257 (373)
T 2fo1_E 178 RRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 257 (373)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHH
T ss_pred hHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHH
Confidence 344455555 88999999999999998542 234444 344443 899999999 44 333 8
Q ss_pred ccCCCCCCC--------CCCCCccHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCchhhhccCCChhHHHHHHhcCC
Q 003951 568 TACPVDVNS--------KVEDGQTELNAANQRGHIEMVKVLLEGG-RNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYEN 638 (784)
Q Consensus 568 l~~g~~~~~--------~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~ 638 (784)
+++|++++. .|..|.||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 258 l~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 337 (373)
T 2fo1_E 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 337 (373)
T ss_dssp HHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999986 6779999999999999999999999876 9999999999999999999999999999999998
Q ss_pred C
Q 003951 639 R 639 (784)
Q Consensus 639 ~ 639 (784)
+
T Consensus 338 d 338 (373)
T 2fo1_E 338 S 338 (373)
T ss_dssp C
T ss_pred C
Confidence 8
No 142
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.50 E-value=2.4e-14 Score=129.58 Aligned_cols=87 Identities=31% Similarity=0.435 Sum_probs=83.6
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.|++|.|| .++.+ |+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+||||.|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 81 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence 789999999 77777 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++|++
T Consensus 82 ~~~~~Ll~~g~~ 93 (126)
T 1n0r_A 82 EVVKLLLEAGAD 93 (126)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999987
No 143
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.50 E-value=1.8e-14 Score=151.78 Aligned_cols=126 Identities=18% Similarity=0.091 Sum_probs=101.0
Q ss_pred hhhhhhc--cCCCCCCCCCCCCCCCCCCCCc---------ccccccc-----------------------------cccC
Q 003951 514 IILHECI--GGPTIGSSLSARHQDYPYGDSS---------MWETRNL-----------------------------NFLG 553 (784)
Q Consensus 514 ~~l~~Ll--g~~~~~~d~~g~t~l~~~~~~~---------~~~~~~~-----------------------------~~~g 553 (784)
..+..|+ |++++..|..|.||+|++.... ...+.++ +..|
T Consensus 120 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 199 (299)
T 1s70_B 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199 (299)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTC
T ss_pred HHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCC
Confidence 3344444 7889999999999999875421 1111111 1238
Q ss_pred CCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChh
Q 003951 554 PQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRS 628 (784)
Q Consensus 554 ~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~ 628 (784)
.||+|+|| .|+.+ |+++|+|+|.+|.+|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+.....-
T Consensus 200 ~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~ 279 (299)
T 1s70_B 200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGY 279 (299)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHH
T ss_pred CCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHH
Confidence 99999999 77777 99999999999999999999999999999999999999999999999999999999877666
Q ss_pred HHHHHHhcCCC
Q 003951 629 MYDLLLSYENR 639 (784)
Q Consensus 629 i~~lL~~~~~~ 639 (784)
+.+++......
T Consensus 280 l~~l~~~~~~~ 290 (299)
T 1s70_B 280 LEELQKKQNLL 290 (299)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHhhh
Confidence 66666655543
No 144
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.49 E-value=1.3e-14 Score=163.61 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=128.5
Q ss_pred cCCHHHHHHHHHHhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEE-eecCc-
Q 003951 354 GLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIH-YVDGQ- 431 (784)
Q Consensus 354 ~Lp~~Lr~~i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~-~~~g~- 431 (784)
..|+..|.+.......+.++++++|.+++++.+..|+..++.+.|++|++|+.+||.++.+|+|.+|.|+++. ..+|+
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 3567778777777788999999999999999999999999999999999999999999999999999999994 45664
Q ss_pred -eeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 003951 432 -DKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLK 498 (784)
Q Consensus 432 -~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~ 498 (784)
+.++..+.+|++|||.+ +.+.+++++++|.++|+++.|++++|.++++++|++...+++.+..++.
T Consensus 106 ~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~l~ 172 (469)
T 1o7f_A 106 DAVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGVME 172 (469)
T ss_dssp GCEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTSCSC
T ss_pred cceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 48899999999999999 9999999999999999999999999999999999987766555444443
No 145
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.49 E-value=1.5e-14 Score=147.98 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=84.1
Q ss_pred cccccCCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCchhhh
Q 003951 548 NLNFLGPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPD-AKGWSPKAPA 621 (784)
Q Consensus 548 ~~~~~g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpl~~A 621 (784)
+++..|.||+|.|| .|+.+ |++ |+++|.+|.+|+||||+|+..|+.++|++|+++|+++|.+| ..|+||||+|
T Consensus 40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 40 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 33344889999999 67777 777 99999999999999999999999999999999999999998 8899999999
Q ss_pred ccCCChhHHHHHHhcCCC
Q 003951 622 EQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 622 ~~~g~~~i~~lL~~~~~~ 639 (784)
+..|+.+++++|+++|++
T Consensus 119 ~~~g~~~~v~~Ll~~ga~ 136 (244)
T 3ui2_A 119 AGYVRPEVVEALVELGAD 136 (244)
T ss_dssp HHTTCHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHCCCC
Confidence 999999999999999988
No 146
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.49 E-value=1.3e-14 Score=153.15 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=81.7
Q ss_pred cCCCchhhhhh----cCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhcc
Q 003951 552 LGPQATDIEAS----KDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQ 623 (784)
Q Consensus 552 ~g~~~l~~a~~----~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 623 (784)
.|.||||+||. ++.+ |+++|+|+|.+|.+|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+.
T Consensus 189 ~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~ 268 (301)
T 2b0o_E 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268 (301)
T ss_dssp CEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 36778888884 4555 899999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhcCCC
Q 003951 624 PVNRSMYDLLLSYENR 639 (784)
Q Consensus 624 ~g~~~i~~lL~~~~~~ 639 (784)
.|+.+++++|+++|++
T Consensus 269 ~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 269 KHHKECEELLEQAQAG 284 (301)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCC
Confidence 9999999999999976
No 147
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.49 E-value=1.6e-14 Score=145.34 Aligned_cols=87 Identities=22% Similarity=0.171 Sum_probs=83.9
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCchhhhccCCC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEG-GRNGNKPDAKGWSPKAPAEQPVN 626 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~g~ 626 (784)
|.|+||.|| .|+.+ |++.|+++|..|..|+||||+||..|+.++|++|+++ |++++.+|..|+||||+|+..|+
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~ 152 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGY 152 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTC
T ss_pred cccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCC
Confidence 689999999 78877 8999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhHHHHHHhcCCC
Q 003951 627 RSMYDLLLSYENR 639 (784)
Q Consensus 627 ~~i~~lL~~~~~~ 639 (784)
.+++++|+++|++
T Consensus 153 ~~~v~~Ll~~ga~ 165 (222)
T 3ehr_A 153 ADIVQLLLAKGAR 165 (222)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999988
No 148
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.49 E-value=1.3e-13 Score=140.34 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHH--cCcccccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCCCc-
Q 003951 380 GVSHDFLFQLVS--DMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYRPQ- 455 (784)
Q Consensus 380 ~~s~~~l~~l~~--~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~- 455 (784)
+++++.+.++.. .++.+.|++|++|+.+||.++.+|||.+|.|+++ ...+|++.++..+ +|++||+.+++.+.++
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~ 81 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSV 81 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBS
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcC
Confidence 678889999885 5899999999999999999999999999999999 5678999999999 9999999999988875
Q ss_pred -eeEEEEc-cceEEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 456 -PFTVRTT-ELSQILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 456 -~~tv~a~-~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
++++.|. ++|+++.|++++|.++++++|++...+++.+.+++.................++..++
T Consensus 82 ~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rla~~L 148 (238)
T 2bgc_A 82 GYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQL 148 (238)
T ss_dssp CCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7788888 5999999999999999999999999999999998877544333322333334333333
No 149
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.48 E-value=8.8e-15 Score=157.28 Aligned_cols=117 Identities=21% Similarity=0.130 Sum_probs=97.5
Q ss_pred CCCCCCCCCCCCCCCCCC--------Ccc-ccccccccc---CCCchhhhh-hcCc---c-----cccCCCCCCCCCCCC
Q 003951 523 PTIGSSLSARHQDYPYGD--------SSM-WETRNLNFL---GPQATDIEA-SKDQ---D-----STACPVDVNSKVEDG 581 (784)
Q Consensus 523 ~~~~~d~~g~t~l~~~~~--------~~~-~~~~~~~~~---g~~~l~~a~-~~~~---~-----ll~~g~~~~~~d~~g 581 (784)
+++..+..|+||||+|.. .++ ..|.+++.. |.++++.++ .++. + |+++|+|+|.+|.+|
T Consensus 160 ~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g 239 (337)
T 4g8k_A 160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 239 (337)
T ss_dssp ----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGG
T ss_pred ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCC
Confidence 445567789999998543 234 346777765 889998876 3332 2 889999999999999
Q ss_pred ccHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 582 QTELNAANQRGHIEMVKVLLEG-GRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 582 ~T~Lh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+||||+|+..|+.++|+.|++. |+++|.+|..|+||||+|+..|+.+++++|+++||+
T Consensus 240 ~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd 298 (337)
T 4g8k_A 240 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 298 (337)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS
T ss_pred CCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 9999999999999999999985 899999999999999999999999999999999988
No 150
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.48 E-value=1.1e-14 Score=137.92 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=82.2
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-chhhhccCCC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWS-PKAPAEQPVN 626 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-pl~~A~~~g~ 626 (784)
|.+++|.|| .|+.+ |+++|+++|.+|..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+..|+
T Consensus 12 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~ 90 (156)
T 1bi7_B 12 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF 90 (156)
T ss_dssp STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCC
Confidence 788999999 78877 89999999999999999999985 99999999999999999999999999 9999999999
Q ss_pred hhHHHHHHhcCCC
Q 003951 627 RSMYDLLLSYENR 639 (784)
Q Consensus 627 ~~i~~lL~~~~~~ 639 (784)
.+++++|+++|++
T Consensus 91 ~~~v~~Ll~~ga~ 103 (156)
T 1bi7_B 91 LDTLVVLHRAGAR 103 (156)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999987
No 151
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.48 E-value=3.6e-14 Score=134.00 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=81.5
Q ss_pred CCCchhhhhhcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChh
Q 003951 553 GPQATDIEASKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRS 628 (784)
Q Consensus 553 g~~~l~~a~~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~ 628 (784)
|.||+|.|..++.+ |+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 36 g~t~L~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 115 (156)
T 1bd8_A 36 GKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115 (156)
T ss_dssp SCCHHHHSCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred CCcHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHH
Confidence 89999993377777 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC
Q 003951 629 MYDLLLSYENR 639 (784)
Q Consensus 629 i~~lL~~~~~~ 639 (784)
++++|++. ++
T Consensus 116 ~v~~Ll~~-~~ 125 (156)
T 1bd8_A 116 VVSFLAAE-SD 125 (156)
T ss_dssp HHHHHHTT-SC
T ss_pred HHHHHHhc-cC
Confidence 99999998 55
No 152
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.47 E-value=5.2e-14 Score=147.27 Aligned_cols=203 Identities=14% Similarity=0.227 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc--ccCCCccchhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHh-hhh
Q 003951 61 AWEMWLVVLVVYSAWICPFEFAF--LTYKKDALLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYM-STW 137 (784)
Q Consensus 61 ~W~~~~~~~~~~~~~~~p~~~~F--~~~~~~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl-~~~ 137 (784)
.|+.+++++++.+++...++..- .......+..+|.++.++|.+|+++++..+ + ++|+ +.|
T Consensus 31 ~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~------------~----~~y~~~~w 94 (285)
T 3rvy_A 31 FFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVH------------R----ISFFKDPW 94 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT------------G----GGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------h----HHHHcCCh
Confidence 78888888888888887766432 111224567899999999999999998543 2 4687 457
Q ss_pred hHHHhhhccchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003951 138 FIFDVCSTAPLQFLALLLTNNISELTFRLLNMLRLWRLRRVSSLFARLEKDIR-FNYFWTRCTKLVAVTLFAVHCAGCFN 216 (784)
Q Consensus 138 f~~Dlis~lP~~~i~~~~~~~~~~~~~~il~llrllRl~r~~~~~~~l~~~~~-~~~~~~~~~~li~~~l~~~h~~aci~ 216 (784)
.++|++.++|..+ +.... ++++|++|++|++|+.+....+..... +......+..+++.++++.-.+|++-
T Consensus 95 n~~Dl~~v~~~~i-----~~~~~---~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g 166 (285)
T 3rvy_A 95 SLFDFFVVAISLV-----PTSSG---FEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMA 166 (285)
T ss_dssp HHHHHHHHHHHHS-----CSSSS---CTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH-----cccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998877632 11121 234455555554444443333222111 00011123333333333344445443
Q ss_pred HHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccC-Ccc-cCCchh----HHHHHHHHHHHHHHHHH
Q 003951 217 YLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYG-DLH-AENPRE----MLFDIFYMLFNLGLTSY 290 (784)
Q Consensus 217 y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyG-Di~-p~~~~e----~i~~i~~~l~g~~~~a~ 290 (784)
+.+.... ..+.++.+..|+||+++|+||+||| |+. |.+..+ ..|++++++.|+++.+.
T Consensus 167 ~~~f~~~----------------~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl 230 (285)
T 3rvy_A 167 TQLFGER----------------FPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINL 230 (285)
T ss_dssp HHHHTTT----------------CHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcc----------------cccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHH
Confidence 3333110 1123667899999999999999999 985 766654 78889999999999999
Q ss_pred HHhhHHHHHHHHh
Q 003951 291 IIGNMTNLVVHWT 303 (784)
Q Consensus 291 ~ig~i~~ii~~~~ 303 (784)
++|.+.+-+....
T Consensus 231 ~~aii~~~f~~~~ 243 (285)
T 3rvy_A 231 VVAICVDAMAILN 243 (285)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHHH
Confidence 9999887765543
No 153
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.47 E-value=3.9e-14 Score=153.21 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=92.8
Q ss_pred Chhhhhhhhc--cCCCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhh-hcCcc----cccCCCCCCCCCCCCcc
Q 003951 511 DPGIILHECI--GGPTIGSSLSARHQDYPYGDSSMWETRNLNFLGPQATDIEA-SKDQD----STACPVDVNSKVEDGQT 583 (784)
Q Consensus 511 ~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~~~~~~~~~~~~~g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T 583 (784)
+....+..|+ |++++..|. ...|.||||+|| .++.+ |+++|+|+|..|..|+|
T Consensus 211 g~~~~v~~LL~~Gadvn~~~~--------------------~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~T 270 (368)
T 3jue_A 211 PSLPTMADALAHGADVNWVNG--------------------GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRG 270 (368)
T ss_dssp CCHHHHHHHHHTTCCTTCCCT--------------------TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCHHHHHHHHHcCCCCCcccc--------------------ccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 4555566666 777776651 012556788888 66666 99999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 584 ELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 584 ~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
|||+|+..|+.++|++|+++||+++.+|..|+||||+|+..|+.+++++|+.+++.
T Consensus 271 pLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999865
No 154
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.47 E-value=2.3e-14 Score=149.30 Aligned_cols=119 Identities=18% Similarity=0.084 Sum_probs=93.6
Q ss_pred cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc-------------CCCchhhhh-hcCcc----cccC-CCC
Q 003951 521 GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL-------------GPQATDIEA-SKDQD----STAC-PVD 573 (784)
Q Consensus 521 g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~-------------g~~~l~~a~-~~~~~----ll~~-g~~ 573 (784)
|++++..|..|+||+|.+.. .+++.+.+++.. |.+|+|.|+ .++.+ |++. |++
T Consensus 95 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~ 174 (285)
T 1wdy_A 95 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174 (285)
T ss_dssp TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC
T ss_pred CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 67778888888888876321 234455555432 778888888 66666 6655 888
Q ss_pred CCCCCCCCccHHHHHHHcCC----HHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHh-cCCC
Q 003951 574 VNSKVEDGQTELNAANQRGH----IEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLS-YENR 639 (784)
Q Consensus 574 ~~~~d~~g~T~Lh~A~~~g~----~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~-~~~~ 639 (784)
++..|..|+||||.|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|++
T Consensus 175 ~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~ 245 (285)
T 1wdy_A 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245 (285)
T ss_dssp TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC
T ss_pred CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC
Confidence 88888888899998888888 888888889999888888888999999988888888888888 6665
No 155
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.46 E-value=4.3e-14 Score=137.69 Aligned_cols=73 Identities=22% Similarity=0.217 Sum_probs=65.8
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCC-CCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCC
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKV-EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPV 625 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g 625 (784)
|.||+|+|| .++.+ |+++|+++|.+| .+|+||||+|+..|+.+++++|+++||+++.+|..|+||||+|+..+
T Consensus 76 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~ 154 (183)
T 3deo_A 76 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 154 (183)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc
Confidence 445577778 67766 999999999998 89999999999999999999999999999999999999999998763
No 156
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.46 E-value=8.5e-15 Score=156.82 Aligned_cols=116 Identities=15% Similarity=0.034 Sum_probs=90.3
Q ss_pred CChhhhhhhhc--cCCCCCCCCCCCCCCCCCCCC-----------ccccc-cccccc---CCCchhhhhh-----cCcc-
Q 003951 510 TDPGIILHECI--GGPTIGSSLSARHQDYPYGDS-----------SMWET-RNLNFL---GPQATDIEAS-----KDQD- 566 (784)
Q Consensus 510 ~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~~-----------~~~~~-~~~~~~---g~~~l~~a~~-----~~~~- 566 (784)
.+....++.|+ |++++..|.+|+||||+|... ++..+ .+++.. |.||||+||. ++.+
T Consensus 141 ~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~ 220 (327)
T 1sw6_A 141 IANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAA 220 (327)
T ss_dssp TTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHH
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHH
Confidence 34556666676 999999999999999985321 22222 334433 9999999994 3333
Q ss_pred ---cccCCC---------------------------------------------CCCCCCCCCccHHHHHHHcCCHHHHH
Q 003951 567 ---STACPV---------------------------------------------DVNSKVEDGQTELNAANQRGHIEMVK 598 (784)
Q Consensus 567 ---ll~~g~---------------------------------------------~~~~~d~~g~T~Lh~A~~~g~~~~v~ 598 (784)
|++.|+ ++|.+|.+|+||||+|+..|+.++|+
T Consensus 221 v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~ 300 (327)
T 1sw6_A 221 AKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 300 (327)
T ss_dssp HHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 444422 58889999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCchhhhccCC
Q 003951 599 VLLEGGRNGNKPDAKGWSPKAPAEQPV 625 (784)
Q Consensus 599 ~Ll~~ga~~~~~d~~g~tpl~~A~~~g 625 (784)
+|+++|||++.+|..|+||||+|++.|
T Consensus 301 ~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 301 ALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred HHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 999999999999999999999999875
No 157
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.46 E-value=3.9e-14 Score=144.92 Aligned_cols=107 Identities=17% Similarity=0.109 Sum_probs=89.4
Q ss_pred Chhhhhhhhc-cCCCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhh-hcCcc----cccCCCCCCCCC-CCCcc
Q 003951 511 DPGIILHECI-GGPTIGSSLSARHQDYPYGDSSMWETRNLNFLGPQATDIEA-SKDQD----STACPVDVNSKV-EDGQT 583 (784)
Q Consensus 511 ~~~~~l~~Ll-g~~~~~~d~~g~t~l~~~~~~~~~~~~~~~~~g~~~l~~a~-~~~~~----ll~~g~~~~~~d-~~g~T 583 (784)
+....+..++ |++++..|.. |.||||+|| .++.+ |+++|+++|.+| ..|+|
T Consensus 56 g~~~~v~~Ll~~~~~~~~d~~----------------------g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t 113 (244)
T 3ui2_A 56 ADEQALSQLLEDRDVDAVDEN----------------------GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 113 (244)
T ss_dssp TCHHHHHHTTTTCCTTCBCTT----------------------SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred CCHHHHHHHHcCCCCCCcCCC----------------------CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 4444555555 6666666654 445677788 67777 999999999998 88999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhc----------------cCCChhHHHHHHhcCCC
Q 003951 584 ELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAE----------------QPVNRSMYDLLLSYENR 639 (784)
Q Consensus 584 ~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~----------------~~g~~~i~~lL~~~~~~ 639 (784)
|||+|+..|+.++|++|+++||+++.+|..|+||||+|+ ..|+.+++++|.+++.+
T Consensus 114 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 114 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999987 66899999999987654
No 158
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.44 E-value=3.4e-14 Score=144.06 Aligned_cols=130 Identities=15% Similarity=0.040 Sum_probs=100.2
Q ss_pred CChhhhhhhhc--cCCCCCCCCCCCCCCCCCCC--------Cccccccccccc----CCCchhhhh-hcCcc----cccC
Q 003951 510 TDPGIILHECI--GGPTIGSSLSARHQDYPYGD--------SSMWETRNLNFL----GPQATDIEA-SKDQD----STAC 570 (784)
Q Consensus 510 ~~~~~~l~~Ll--g~~~~~~d~~g~t~l~~~~~--------~~~~~~~~~~~~----g~~~l~~a~-~~~~~----ll~~ 570 (784)
.+....++.++ |++++..|..|.||+|.|.. .+++.+.+++.. |.+|+|.|| .++.+ |+++
T Consensus 19 ~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 19 YGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred cCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc
Confidence 34455555666 77888888888888887432 235555554433 678888888 66666 8888
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCC-hhHHHHHHhcCCC
Q 003951 571 PVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVN-RSMYDLLLSYENR 639 (784)
Q Consensus 571 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~-~~i~~lL~~~~~~ 639 (784)
|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+||||.|+..|+ .+++++|++.|++
T Consensus 99 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~ 168 (240)
T 3eu9_A 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168 (240)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC
T ss_pred CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC
Confidence 88888888888888888888888888888888888888888888888888886665 7888888888877
No 159
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.44 E-value=3.5e-14 Score=123.42 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHH
Q 003951 198 CTKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFD 277 (784)
Q Consensus 198 ~~~li~~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~ 277 (784)
+...++.++.++.+.++++|+++...++ +.+..|.+|+||+++|+||+||||++|.++.+++++
T Consensus 8 ~l~~~~~~~~~~~~~a~~~~~~E~~~~~----------------~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~ 71 (103)
T 2k1e_A 8 AQKAEEELQKVLEEASKKAVEAERGAPG----------------AALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVA 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------CCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCC----------------cccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHH
Confidence 3444445555666778888888743211 111247899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhH
Q 003951 278 IFYMLFNLGLTSYIIGNMTNLVVHWTS 304 (784)
Q Consensus 278 i~~~l~g~~~~a~~ig~i~~ii~~~~~ 304 (784)
++++++|+++++++++.+++.+.+..+
T Consensus 72 ~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 72 EQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp HHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988765443
No 160
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.43 E-value=2.2e-13 Score=146.51 Aligned_cols=87 Identities=24% Similarity=0.244 Sum_probs=81.8
Q ss_pred CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCCh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNR 627 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~ 627 (784)
|.||||+|| .|+.+ |+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.
T Consensus 58 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 137 (351)
T 3utm_A 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137 (351)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 556678888 67776 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 003951 628 SMYDLLLSYENR 639 (784)
Q Consensus 628 ~i~~lL~~~~~~ 639 (784)
+++++|+++|++
T Consensus 138 ~~v~~Ll~~g~~ 149 (351)
T 3utm_A 138 EVCSLLLSHGAD 149 (351)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999988
No 161
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.40 E-value=1.4e-12 Score=115.19 Aligned_cols=56 Identities=30% Similarity=0.526 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVH 301 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~ 301 (784)
.|.+|+||+++|+||+||||++|.|+.+++++++++++|++++++.++.+++.+..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999987643
No 162
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.39 E-value=7.6e-13 Score=149.02 Aligned_cols=124 Identities=15% Similarity=0.228 Sum_probs=108.1
Q ss_pred HHhhhhhhccccccccCCHHHHHHHHHcCcc-cccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCe
Q 003951 365 HYLFFPIVQNVYLFQGVSHDFLFQLVSDMDA-EYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDA 443 (784)
Q Consensus 365 ~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~-~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~ 443 (784)
.+...+.++++++|.+++++.+..++..+.. +.|++|++|+++||.++.+|||.+|.|+++. +|+ .++..+.+|++
T Consensus 332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~~~-~~~~~l~~G~~ 408 (469)
T 1o7f_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI--YGK-GVVCTLHEGDD 408 (469)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE--TTT-EEEEEEETTCE
T ss_pred HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE--cCC-eeEEEecCCCE
Confidence 3345678899999999999999999999985 4899999999999999999999999999985 333 37899999999
Q ss_pred eehhhhhcCCCceeEEEEcc-ceEEEEecHHHHHHHHHhcHHHHHHHHH
Q 003951 444 FGEIGVLYYRPQPFTVRTTE-LSQILRLSRTSLMNSIQANMEDGRIVMN 491 (784)
Q Consensus 444 fGe~~~l~~~~~~~tv~a~~-~~~l~~l~~~~f~~ll~~~p~~~~~~~~ 491 (784)
|||.+++.+.|+.++++|.+ +|+++.|++++|.++++.+|+....+..
T Consensus 409 fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e 457 (469)
T 1o7f_A 409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 457 (469)
T ss_dssp ECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC------
T ss_pred EEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHh
Confidence 99999999999999999998 7999999999999999999998776544
No 163
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.38 E-value=1.2e-12 Score=128.72 Aligned_cols=118 Identities=23% Similarity=0.303 Sum_probs=101.6
Q ss_pred cccccCCeEEecCCCCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecHHH
Q 003951 396 EYFPPKEDVILQNEAPTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTS 474 (784)
Q Consensus 396 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~~ 474 (784)
+.|++|++|+.+|++++.+|+|.+|.|+++ ...+|++.++..+.+|++||+ +++.+.+++++++|.++|+++.|++++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 578999999999999999999999999999 556889999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 475 LMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 475 f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
|. |++...+++.+.+++.................++..++
T Consensus 81 ~~------p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L 120 (195)
T 3b02_A 81 MD------HEALHRVARNLARQMRRVQAYEAHLQTGELRARIARYL 120 (195)
T ss_dssp CC------HHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred cC------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 97 99999999999999887655444334445555554444
No 164
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.38 E-value=1.2e-12 Score=160.84 Aligned_cols=135 Identities=21% Similarity=0.228 Sum_probs=116.4
Q ss_pred HHhcCCHHHHHHHHHHhhhhhhccccccccCCHHHHHHHHHcCcccccccCCeEEecCCCCCeEEEEEecEEEEEEe---
Q 003951 351 TLVGLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHY--- 427 (784)
Q Consensus 351 ~l~~Lp~~Lr~~i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~--- 427 (784)
.|++-| .-|.+=-.++....|+.+.+|+++++..+.+|+.+|..+.|++|++||++||.++++|+|.+|.|+|+..
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 344433 3443333344557789999999999999999999999999999999999999999999999999999953
Q ss_pred ecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecHHHHHHHHHhcHHHHH
Q 003951 428 VDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSLMNSIQANMEDGR 487 (784)
Q Consensus 428 ~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~~f~~ll~~~p~~~~ 487 (784)
.++.+.++..+.+|+.||| +++.+.||+++|+|.++|++++|++++|..++..+|+...
T Consensus 103 ~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 103 SHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp CTTSCEEEEEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred CCCCceeEEEecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 2345778999999999999 8999999999999999999999999999999999987543
No 165
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.35 E-value=4.1e-12 Score=108.71 Aligned_cols=81 Identities=27% Similarity=0.454 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHH
Q 003951 199 TKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDI 278 (784)
Q Consensus 199 ~~li~~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i 278 (784)
+..++.++++..+.+++.|...+ .| .|.+|+||+++|+||+||||++|.+..++++++
T Consensus 7 ~~~~~~~~~~~~~~g~~~~~~~e-------~~---------------~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~ 64 (97)
T 3ouf_A 7 FQVLFVLTILTLISGTIFYSTVE-------GL---------------RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-------CC---------------CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------CC---------------CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHH
Confidence 34444555566667777776542 12 388999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 003951 279 FYMLFNLGLTSYIIGNMTNLVVH 301 (784)
Q Consensus 279 ~~~l~g~~~~a~~ig~i~~ii~~ 301 (784)
+++++|+.++++.++.++..+..
T Consensus 65 ~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 65 LYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999887643
No 166
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.34 E-value=2.5e-12 Score=106.41 Aligned_cols=54 Identities=22% Similarity=0.621 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLV 299 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii 299 (784)
.|.+|+||+++|+||+||||++|.|+.+++++++.+++|+.++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999998764
No 167
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.32 E-value=1.1e-12 Score=141.74 Aligned_cols=87 Identities=22% Similarity=0.153 Sum_probs=82.2
Q ss_pred CCCchhhhh-h-cCcc----cccCCCCCCCCC--CCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccC
Q 003951 553 GPQATDIEA-S-KDQD----STACPVDVNSKV--EDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQP 624 (784)
Q Consensus 553 g~~~l~~a~-~-~~~~----ll~~g~~~~~~d--~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 624 (784)
+.++||.|+ . ++.+ |+++|+|+|..| .+|.||||+|+..|+.++|++|+++||++|.+|..|+||||+|+..
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~ 278 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 457899999 5 6776 899999999998 8999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhcCCC
Q 003951 625 VNRSMYDLLLSYENR 639 (784)
Q Consensus 625 g~~~i~~lL~~~~~~ 639 (784)
|+.+++++|+++|++
T Consensus 279 g~~~~v~~LL~~Gad 293 (368)
T 3jue_A 279 GHTGLACLFLKRGAD 293 (368)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHCcCC
Confidence 999999999999988
No 168
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.31 E-value=1.8e-13 Score=122.13 Aligned_cols=92 Identities=22% Similarity=0.207 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCCC--------Cccccccccccc---CCCchhhhh-hcCcc----cccCCCCCCCCCCCCccHHHHHHH
Q 003951 527 SSLSARHQDYPYGD--------SSMWETRNLNFL---GPQATDIEA-SKDQD----STACPVDVNSKVEDGQTELNAANQ 590 (784)
Q Consensus 527 ~d~~g~t~l~~~~~--------~~~~~~~~~~~~---g~~~l~~a~-~~~~~----ll~~g~~~~~~d~~g~T~Lh~A~~ 590 (784)
.|.+|+||+|.|.. .+++.+.+++.. |.||+|.|| .++.+ |+++|++++.+|..|.||||+|+.
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~ 84 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 46678888887432 345566666544 888999999 66666 899999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCCch
Q 003951 591 RGHIEMVKVLLEGGRNGNKPDAKGWSPK 618 (784)
Q Consensus 591 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpl 618 (784)
.|+.+++++|+++|||+|.++..|+||-
T Consensus 85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 85 NGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999999999999999999999999984
No 169
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.31 E-value=5.8e-12 Score=146.84 Aligned_cols=135 Identities=16% Similarity=0.234 Sum_probs=116.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhhhhccccccccCCHHHHHHHHHcCc-ccccccCCeEEecCCCCCeEEEEEecEEEEEEe
Q 003951 349 QETLVGLPKAIRSSIAHYLFFPIVQNVYLFQGVSHDFLFQLVSDMD-AEYFPPKEDVILQNEAPTDLYILVSGAVDLIHY 427 (784)
Q Consensus 349 ~~~l~~Lp~~Lr~~i~~~~~~~~l~~~~lf~~~s~~~l~~l~~~~~-~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~ 427 (784)
..+|.. |+..|.+...+...+.++++++|.+++++.+..++..+. .+.|++|++|+.+||.++.+|+|.+|.|+++.
T Consensus 12 r~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~- 89 (694)
T 3cf6_E 12 RMILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI- 89 (694)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred HHHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEE-
Confidence 344543 344455444444567899999999999999999999998 78999999999999999999999999999985
Q ss_pred ecCceeEEEEecCCCeeehhhhhcCCCceeEEEEcc-ceEEEEecHHHHHHHHHhcHHHHH
Q 003951 428 VDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTE-LSQILRLSRTSLMNSIQANMEDGR 487 (784)
Q Consensus 428 ~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~-~~~l~~l~~~~f~~ll~~~p~~~~ 487 (784)
.|+ .++..+.+|++|||.+++.+.+++++++|.+ +|+++.|++++|.++++++|....
T Consensus 90 -~g~-~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~ 148 (694)
T 3cf6_E 90 -YGK-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTV 148 (694)
T ss_dssp -TTT-EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCE
T ss_pred -eCC-EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHH
Confidence 344 6889999999999999999999999999999 599999999999999999998754
No 170
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.30 E-value=1.6e-12 Score=147.44 Aligned_cols=85 Identities=16% Similarity=0.098 Sum_probs=80.5
Q ss_pred Cchhhhh-hcCcc----cccCCCCCCCC------CCCCccHHHHHHH---cCCHHHHHHHHhCCCCCCCCCCCCCCchhh
Q 003951 555 QATDIEA-SKDQD----STACPVDVNSK------VEDGQTELNAANQ---RGHIEMVKVLLEGGRNGNKPDAKGWSPKAP 620 (784)
Q Consensus 555 ~~l~~a~-~~~~~----ll~~g~~~~~~------d~~g~T~Lh~A~~---~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 620 (784)
+.|+.|+ .|+.+ |++.|+|+|.+ |.+|.||||+|+. .|+.++|++|+++|||+|.+|..|+||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 5688899 78887 99999999988 8999999999966 999999999999999999999999999999
Q ss_pred hccCCChhHHHHHHhcCCC
Q 003951 621 AEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 621 A~~~g~~~i~~lL~~~~~~ 639 (784)
|+..||.+++++|+++||+
T Consensus 214 A~~~g~~~~v~~Ll~~ga~ 232 (497)
T 3lvq_E 214 AALYNQPDCLKLLLKGRAL 232 (497)
T ss_dssp HTTTTCHHHHHHHHHTCCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999998
No 171
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.29 E-value=2.4e-12 Score=134.13 Aligned_cols=85 Identities=21% Similarity=0.168 Sum_probs=77.8
Q ss_pred Cchhhhh-hcCcc----cccCCCCC------CCCCCCCccHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCCchhh
Q 003951 555 QATDIEA-SKDQD----STACPVDV------NSKVEDGQTELNAANQR---GHIEMVKVLLEGGRNGNKPDAKGWSPKAP 620 (784)
Q Consensus 555 ~~l~~a~-~~~~~----ll~~g~~~------~~~d~~g~T~Lh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 620 (784)
++++.|+ .++.+ ++..|+++ +..|..|+||||+|+.. |+.+++++|+++||++|.+|..|+||||+
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~ 211 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY 211 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence 4677787 67776 78899994 45589999999999999 99999999999999999999999999999
Q ss_pred hccCCChhHHHHHHhcCCC
Q 003951 621 AEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 621 A~~~g~~~i~~lL~~~~~~ 639 (784)
|+..|+.+++++|+++|++
T Consensus 212 A~~~g~~~~v~~Ll~~gad 230 (278)
T 1dcq_A 212 CCLTDNAECLKLLLRGKAS 230 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999988
No 172
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.28 E-value=3.1e-12 Score=109.26 Aligned_cols=60 Identities=35% Similarity=0.509 Sum_probs=57.3
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 580 DGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 580 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 60 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 589999999999999999999999999999999999999999999999999999999987
No 173
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.27 E-value=4.4e-12 Score=125.44 Aligned_cols=124 Identities=14% Similarity=0.101 Sum_probs=100.5
Q ss_pred HHHcCcccccccCCeEEecCCCC--CeEEEEEecEEEEE-EeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccce
Q 003951 389 LVSDMDAEYFPPKEDVILQNEAP--TDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELS 465 (784)
Q Consensus 389 l~~~~~~~~~~~~e~I~~~g~~~--~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~ 465 (784)
|...++.+.|++|++|+.+|+++ +.+|+|.+|.|+++ ...+|++.++..+.+|++||+ +++.+.+++++++|.++|
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~ 79 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDV 79 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCE
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccE
Confidence 34567889999999999999999 99999999999999 557899999999999999999 989999999999999999
Q ss_pred EEEEecHHHHHHHHHhcHHHHHHHHHHHHHHHHhhccccccCCCCChhhhhhhhc
Q 003951 466 QILRLSRTSLMNSIQANMEDGRIVMNNLFRKLKDQESIGFEYPTTDPGIILHECI 520 (784)
Q Consensus 466 ~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~Ll 520 (784)
+++.| +++|. |++...+++.+.+++.................++..++
T Consensus 80 ~v~~i-~~~~~------p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L 127 (202)
T 2zcw_A 80 RLEPL-PENPD------PELLKDLAQHLSQGLAEAYRRIERLATQRLKNRMAAAL 127 (202)
T ss_dssp EEEEC-CSSCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred EEEEE-hHhcC------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999 99886 99999999988888877554433333334444444444
No 174
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.27 E-value=2.7e-12 Score=135.39 Aligned_cols=86 Identities=17% Similarity=0.113 Sum_probs=80.5
Q ss_pred CCchhhhh-hcCcc----cccCCCCCCC------CCCCCccHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCCchh
Q 003951 554 PQATDIEA-SKDQD----STACPVDVNS------KVEDGQTELNAANQR---GHIEMVKVLLEGGRNGNKPDAKGWSPKA 619 (784)
Q Consensus 554 ~~~l~~a~-~~~~~----ll~~g~~~~~------~d~~g~T~Lh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 619 (784)
.++++.|+ .++.+ +++.|+|+|. .|..|+||||+|+.. |+.+++++|+++||++|.+|..|+||||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh 231 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 231 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 35688888 77777 8899999998 699999999999997 8999999999999999999999999999
Q ss_pred hhccCCChhHHHHHHhcCCC
Q 003951 620 PAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 620 ~A~~~g~~~i~~lL~~~~~~ 639 (784)
+|+..|+.+++++|+++|++
T Consensus 232 ~A~~~g~~~~v~~Ll~~gad 251 (301)
T 2b0o_E 232 YAALYNQPDCLKLLLKGRAL 251 (301)
T ss_dssp HHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999988
No 175
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.22 E-value=2.1e-14 Score=136.49 Aligned_cols=60 Identities=25% Similarity=0.420 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHh
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSR 305 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~ 305 (784)
.|.+|+||+++|+|||||||++|.|+.+++++++++++|+++++++++.+++.+.....+
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 126 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ 126 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999887654433
No 176
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.20 E-value=5.8e-11 Score=145.89 Aligned_cols=112 Identities=18% Similarity=0.270 Sum_probs=100.0
Q ss_pred hhhhhhccccccccCCHHHHHHHHHcCcccc-cccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeee
Q 003951 367 LFFPIVQNVYLFQGVSHDFLFQLVSDMDAEY-FPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 367 ~~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~-~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 445 (784)
...+.++++++|.+++...+++|+..+..+. +.+|++|++|||.++.+|||.+|.|+|+. ++ +..+..+++||+||
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~--~~-~~~v~~L~~Gd~FG 410 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI--YG-KGVVCTLHEGDDFG 410 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE--TT-TEEEEEEETTCEEC
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE--cC-CcceEEecCCCccc
Confidence 3457788999999999999999999998654 57799999999999999999999999984 23 34578899999999
Q ss_pred hhhhhcCCCceeEEEEccc-eEEEEecHHHHHHHHHh
Q 003951 446 EIGVLYYRPQPFTVRTTEL-SQILRLSRTSLMNSIQA 481 (784)
Q Consensus 446 e~~~l~~~~~~~tv~a~~~-~~l~~l~~~~f~~ll~~ 481 (784)
|.+++.+.||.+|++|.++ |++++|++++|.+++.+
T Consensus 411 ElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 411 KLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp GGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred chhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 9999999999999999985 99999999999998865
No 177
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.19 E-value=5.6e-14 Score=152.52 Aligned_cols=109 Identities=12% Similarity=0.028 Sum_probs=80.1
Q ss_pred CCCCCCCCCCC--------Ccccccc------cccccCCCchhhhh-hcCcc----cccCCCCC---CCCCCCCccHHHH
Q 003951 530 SARHQDYPYGD--------SSMWETR------NLNFLGPQATDIEA-SKDQD----STACPVDV---NSKVEDGQTELNA 587 (784)
Q Consensus 530 ~g~t~l~~~~~--------~~~~~~~------~~~~~g~~~l~~a~-~~~~~----ll~~g~~~---~~~d~~g~T~Lh~ 587 (784)
+++||||.|.. .++..+. .++..|.+|+|+|| .|+.+ |+++|+|+ +..+.+ .||||+
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~ 169 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL 169 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence 45677776432 2344444 33444778999999 67777 88888762 333333 899999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCC--CCCCCCCchhhhc-cCCChhHHHHHHhcCCC
Q 003951 588 ANQRGHIEMVKVLLEGGRNGNK--PDAKGWSPKAPAE-QPVNRSMYDLLLSYENR 639 (784)
Q Consensus 588 A~~~g~~~~v~~Ll~~ga~~~~--~d~~g~tpl~~A~-~~g~~~i~~lL~~~~~~ 639 (784)
||..|+.++|++|+++||+++. .|..|+||||+|+ ..||.+++++|++.|+.
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~ 224 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM 224 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc
Confidence 9999999999999999999887 7888999999999 99999999999887653
No 178
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.13 E-value=3.7e-11 Score=106.11 Aligned_cols=66 Identities=21% Similarity=0.219 Sum_probs=60.1
Q ss_pred CCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhhhccCCChhHHHHHHhcCCC
Q 003951 574 VNSKVEDGQTELNAANQRGHIEMVKVLLEGGRNGNKPDAKGWSPKAPAEQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 574 ~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~lL~~~~~~ 639 (784)
++..|.+|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~ 82 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 456788999999999999999999999999999999999999999999999999999999999987
No 179
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.05 E-value=2.5e-10 Score=118.46 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHH
Q 003951 205 TLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFN 284 (784)
Q Consensus 205 ~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g 284 (784)
.++.+.++|++||..+...+ .+....|.+|+||+++|+|||||||++|.++.+++++++.+++|
T Consensus 57 ~~~~~l~fa~ly~~~~~~~~----------------~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G 120 (301)
T 1xl4_A 57 YLVTNALFALAYLACGDVIE----------------NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCG 120 (301)
T ss_dssp HHHHHHHHHHHHHHTCSCST----------------TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccC----------------CCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHH
Confidence 34455777888666542111 01123588999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHH
Q 003951 285 LGLTSYIIGNMTNLV 299 (784)
Q Consensus 285 ~~~~a~~ig~i~~ii 299 (784)
++++|+++|.+.+.+
T Consensus 121 ~~~~a~~~g~v~~~~ 135 (301)
T 1xl4_A 121 MLGLAVAASLIYARF 135 (301)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877644
No 180
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.02 E-value=7.5e-10 Score=114.15 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVHW 302 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~ 302 (784)
.|.+|+||+++|+|||||||++|.|..+++|+++++++|+.+++++++.++..+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999887653
No 181
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.97 E-value=5.2e-10 Score=117.22 Aligned_cols=55 Identities=22% Similarity=0.406 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVV 300 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~ 300 (784)
.|.+|+||+++|+|||||||++|.++.+++++++.+++|++++++++|.+.+.+.
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~ 150 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 150 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999887553
No 182
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.94 E-value=1.2e-09 Score=114.02 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVV 300 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~ 300 (784)
.|.+|+||+++|||||||||+.|.+..+++++++.+++|++++|+++|.+.+.+.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~ 132 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMS 132 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999887654
No 183
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=98.90 E-value=1e-10 Score=126.90 Aligned_cols=86 Identities=9% Similarity=0.017 Sum_probs=70.4
Q ss_pred CCCchhhhh-hcCcc----cccCCCCC---CCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCC---CCCCCCCCCchhhh
Q 003951 553 GPQATDIEA-SKDQD----STACPVDV---NSKVEDGQTELNAANQRGHIEMVKVLLEGGRNG---NKPDAKGWSPKAPA 621 (784)
Q Consensus 553 g~~~l~~a~-~~~~~----ll~~g~~~---~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~tpl~~A 621 (784)
+.||+|.|| .|+.+ |++.|++. +..+..|.||||+||..|+.++|++|+++|||+ +..+.+ +||||+|
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~A 170 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLA 170 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHH
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHH
Confidence 459999999 78888 88999833 344567899999999999999999999999863 333333 9999999
Q ss_pred ccCCChhHHHHHHhcCCC
Q 003951 622 EQPVNRSMYDLLLSYENR 639 (784)
Q Consensus 622 ~~~g~~~i~~lL~~~~~~ 639 (784)
+..||.+++++|+++|++
T Consensus 171 a~~G~~eiv~~Ll~~ga~ 188 (376)
T 2aja_A 171 AENGHLHVLNRLCELAPT 188 (376)
T ss_dssp HHTTCHHHHHHHHHSCGG
T ss_pred HHCCCHHHHHHHHHcCCc
Confidence 999999999999999987
No 184
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.84 E-value=3.6e-09 Score=109.06 Aligned_cols=60 Identities=28% Similarity=0.448 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhccccccCCcccCCchhH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhH
Q 003951 247 YVTAMYWSITTLTTTGYGDLHAENPREM------LFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRT 306 (784)
Q Consensus 247 Y~~slyw~i~tltTvGyGDi~p~~~~e~------i~~i~~~l~g~~~~a~~ig~i~~ii~~~~~~~ 306 (784)
|++|+||+++|+|||||||+.|.+..++ +++++++++|+++++++++.+++.+....+++
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999887 59999999999999999999988776554443
No 185
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.82 E-value=8.4e-09 Score=118.54 Aligned_cols=87 Identities=17% Similarity=0.322 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccCCchhHHH
Q 003951 197 RCTKLVAVTLFAVHCAGCFNYLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLF 276 (784)
Q Consensus 197 ~~~~li~~~l~~~h~~aci~y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~ 276 (784)
++..+++.+++++++.+|+|+++...... ..| .|++|+||+++|+||+||||++|.|+.+++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~---------------~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~ 81 (565)
T 4gx0_A 19 VLLLYCAFLLVMLLAYASIFRYLMWHLEG--RAY---------------SFMAGIYWTITVMTTLGFGDITFESDAGYLF 81 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCC---------------CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCC---------------chhhhhheeeeeeeeecCCCcCCCCccHHHH
Confidence 34555556666677777777765421111 112 3689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh-HHHHHH
Q 003951 277 DIFYMLFNLGLTSYIIGN-MTNLVV 300 (784)
Q Consensus 277 ~i~~~l~g~~~~a~~ig~-i~~ii~ 300 (784)
+++++++|++++++.++. ++..+.
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 82 ASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 555543
No 186
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.79 E-value=1.3e-08 Score=102.50 Aligned_cols=202 Identities=16% Similarity=0.250 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccc-CCCccchhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHh-hhh
Q 003951 60 RAWEMWLVVLVVYSAWICPFEFAFLT-YKKDALLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYM-STW 137 (784)
Q Consensus 60 ~~W~~~~~~~~~~~~~~~p~~~~F~~-~~~~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl-~~~ 137 (784)
+.++.++.++++.+++....+..-.. .....+..+|.++.++|.+|+++++... + -.++|+ ++|
T Consensus 12 ~~f~~~i~~~I~ln~i~l~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~------------~--~~~~y~~~~w 77 (229)
T 4dxw_A 12 RIFQFTVVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEILIRFIGE------------K--QKADFFKSGW 77 (229)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHH
T ss_pred chHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------C--chhHHhcCCc
Confidence 37888899999988887766541111 1113467899999999999999998553 1 124677 457
Q ss_pred hHHHhhhccchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003951 138 FIFDVCSTAPLQFLALLLTNNISELTFRLLNMLRLWRLRRVSSLFARLEKDIR-FNYFWTRCTKLVAVTLFAVHCAGCFN 216 (784)
Q Consensus 138 f~~Dlis~lP~~~i~~~~~~~~~~~~~~il~llrllRl~r~~~~~~~l~~~~~-~~~~~~~~~~li~~~l~~~h~~aci~ 216 (784)
.++|++.++|..+ +...+ ...+++|++|++|++|+.+..+.++.... .......+..+...++.+...+|.+-
T Consensus 78 ni~D~~~v~~~~i-----~~~~~-~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g 151 (229)
T 4dxw_A 78 NIFDTVIVAISLI-----PIPNN-SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMG 151 (229)
T ss_dssp HHHHHHHHHHTTC-----C---------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----hcCcc-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999776655421 00011 12223344444444444433333332211 11112234444444444444555543
Q ss_pred HHHhhcCCCCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCccc----CCchhHHHHH-HHHHHHHHHHHHH
Q 003951 217 YLIADRYPDPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHA----ENPREMLFDI-FYMLFNLGLTSYI 291 (784)
Q Consensus 217 y~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p----~~~~e~i~~i-~~~l~g~~~~a~~ 291 (784)
+.+.... + .+.++.+..|++|.+.++|+.||+|+.. .++...++-+ ++++.+.++....
T Consensus 152 ~~lf~~~-~---------------~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlf 215 (229)
T 4dxw_A 152 AILFGND-D---------------PSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLV 215 (229)
T ss_dssp HHHTTTT-S---------------CTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccC-C---------------cccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3332211 1 1124568899999999999999998721 2333333333 3333444444555
Q ss_pred HhhHHH
Q 003951 292 IGNMTN 297 (784)
Q Consensus 292 ig~i~~ 297 (784)
++.+.+
T Consensus 216 iavi~~ 221 (229)
T 4dxw_A 216 IAILVD 221 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 187
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.76 E-value=2.7e-08 Score=100.90 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003951 246 RYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVH 301 (784)
Q Consensus 246 ~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~ 301 (784)
.|.+|+||+++|+|||||||++|.|+.+++|+++++++|+.+++++++.++..+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999998865544
No 188
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.75 E-value=5.9e-08 Score=101.26 Aligned_cols=90 Identities=24% Similarity=0.342 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCC----CCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCcccC--CchhHHHHH
Q 003951 205 TLFAVHCAGCFNYLIADRYPD----PEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHAE--NPREMLFDI 278 (784)
Q Consensus 205 ~l~~~h~~aci~y~i~~~~~~----~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p~--~~~e~i~~i 278 (784)
.++..-++|++||+++....+ +..+|.... .....+..++|||++|+|||||||+.|. ++.++++++
T Consensus 53 y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv-------~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~ 125 (340)
T 3sya_A 53 YTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCV-------TNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLL 125 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSB-------SCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccccchh-------ccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHH
Confidence 444555789999988731111 122332211 0123467899999999999999999996 688999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 003951 279 FYMLFNLGLTSYIIGNMTNLVVH 301 (784)
Q Consensus 279 ~~~l~g~~~~a~~ig~i~~ii~~ 301 (784)
+.+++|+++.|+.+|.+.+-+..
T Consensus 126 ~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 126 IQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999988765543
No 189
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.74 E-value=1.6e-08 Score=102.53 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhccccccCCcccCCch-------hHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003951 247 YVTAMYWSITTLTTTGYGDLHAENPR-------EMLFDIFYMLFNLGLTSYIIGNMTNLVVHW 302 (784)
Q Consensus 247 Y~~slyw~i~tltTvGyGDi~p~~~~-------e~i~~i~~~l~g~~~~a~~ig~i~~ii~~~ 302 (784)
|++|+||+++|+|||||||+.|.+.. .++++++++++|+++++++++.++++....
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999985 499999999999999999999998876543
No 190
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.57 E-value=1.9e-07 Score=97.62 Aligned_cols=89 Identities=26% Similarity=0.304 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-----CCCCcccccccCCCCCCchHHHHHHHHHHHhhhccccccCCccc--CCchhHHH
Q 003951 204 VTLFAVHCAGCFNYLIADRYP-----DPEKTWIGAVYPNFKEETLWNRYVTAMYWSITTLTTTGYGDLHA--ENPREMLF 276 (784)
Q Consensus 204 ~~l~~~h~~aci~y~i~~~~~-----~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGyGDi~p--~~~~e~i~ 276 (784)
..++..-++|.+||+++.... .+..+|..... ....+..++|||++|+||+||||+.| .++.++++
T Consensus 54 ~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~-------~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l 126 (343)
T 3spc_A 54 AFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVL-------QVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFM 126 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEE-------TCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccccccccccc-------ccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHH
Confidence 444456677888888763211 12233422110 12357899999999999999999986 48999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 003951 277 DIFYMLFNLGLTSYIIGNMTNLV 299 (784)
Q Consensus 277 ~i~~~l~g~~~~a~~ig~i~~ii 299 (784)
+.+.+++|+++.|..+|.+.+-+
T Consensus 127 ~~~~~l~G~~l~a~~~giv~ak~ 149 (343)
T 3spc_A 127 VVVQSIVGCIIDSFMIGAIMAKM 149 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876544
No 191
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=98.41 E-value=2.6e-07 Score=84.96 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCC--CccchhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhhhhh
Q 003951 61 AWEMWLVVLVVYSAWICPFEFAFLTYK--KDALLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMSTWF 138 (784)
Q Consensus 61 ~W~~~~~~~~~~~~~~~p~~~~F~~~~--~~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~~~f 138 (784)
.|+.+++++++.+++++.++....... ...+..+|.++.++|.+|+++++..+ .++ ++|+++ .
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a----------~~k----~~f~~~-~ 86 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS----------GDP----AGYVKK-T 86 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------TCH----HHHHHH-S
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CcH----HHHHHH-H
Confidence 588899999998888888876653221 23467899999999999999999665 233 467765 6
Q ss_pred HHHhhhccchHHH
Q 003951 139 IFDVCSTAPLQFL 151 (784)
Q Consensus 139 ~~Dlis~lP~~~i 151 (784)
++|+++++|+...
T Consensus 87 iiDllailP~~~~ 99 (147)
T 2kyh_A 87 LYEIPALVPAGLL 99 (147)
T ss_dssp TTTHHHHCCHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999643
No 192
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=98.35 E-value=4e-07 Score=82.53 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccC--CCccchhHHHHHHHHHHHhhheeeeEeEEeCCCeEEeeChHHHHHHHhhhh
Q 003951 60 RAWEMWLVVLVVYSAWICPFEFAFLTY--KKDALLIIDNIVNGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYMSTW 137 (784)
Q Consensus 60 ~~W~~~~~~~~~~~~~~~p~~~~F~~~--~~~~~~~~~~~~~~~f~iDi~l~f~t~y~~~~~~~~v~~~~~i~~~Yl~~~ 137 (784)
+.++.+++++++.+++...++...... ....+..+|+++.++|.+|+++++..+ .+| ++|++ |
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~----------~~~----~~y~~-~ 70 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS----------GDP----AGYVK-K 70 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TST----TTTTT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCH----HHHHH-H
Confidence 468889999999988888877643222 224567899999999999999999664 122 47888 8
Q ss_pred hHHHhhhccchHHH
Q 003951 138 FIFDVCSTAPLQFL 151 (784)
Q Consensus 138 f~~Dlis~lP~~~i 151 (784)
.++|+++++|+...
T Consensus 71 niiDllailp~~~~ 84 (132)
T 1ors_C 71 TLYEIPALVPAGLL 84 (132)
T ss_dssp CGGGTGGGSCHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999999643
No 193
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.33 E-value=3.4e-08 Score=105.61 Aligned_cols=55 Identities=22% Similarity=0.661 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003951 247 YVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVH 301 (784)
Q Consensus 247 Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~ 301 (784)
|.+|+||+++|+||+||||+.|.|+.+++|+++++++|+++++++++.++..+..
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999998877654
No 194
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.00096 Score=57.30 Aligned_cols=72 Identities=10% Similarity=0.176 Sum_probs=58.0
Q ss_pred CCCcceEEEeCCCCCCccccccCcEEEEcc----ccHHHHHHHHhhhcCCCc--ceeeeeCCCceeeeeeeeecCCEEEE
Q 003951 698 KSNKKRITIHMPYQNTRTSQRHLGKLIVLP----DSIEELLRIAGEKFGGYK--FTKVVNAENAEIDDICVIRDGDHLFL 771 (784)
Q Consensus 698 ~~~~~Rvti~~~~~~~~~~~~~~gk~~~~p----~s~~ell~~a~~~~~~~~--~~~~~~~~ga~id~i~~ird~~~l~~ 771 (784)
...++||++|.+..... .|..+.++ .|++.||....++.+... ..++++.+|.+|.+++-+.||+ .|+
T Consensus 11 ~~~pk~I~v~rNGD~~~-----~g~~v~i~~~~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~l~dl~dg~-~YV 84 (108)
T 2dnf_A 11 LQEPCTIFLIANGDLIN-----PASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQ-FYV 84 (108)
T ss_dssp CCCCEEEEECBTTCSSS-----CCEEEEECHHHHTCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESSTTSCCSSC-BEE
T ss_pred CCcceEEEEEeCCCCCC-----CCEEEEECCccccCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCCHHHhCCCC-EEE
Confidence 34578999999866432 55655544 599999999999998643 5799999999999999999888 888
Q ss_pred EecC
Q 003951 772 LQNE 775 (784)
Q Consensus 772 ~~~~ 775 (784)
+++.
T Consensus 85 a~g~ 88 (108)
T 2dnf_A 85 AVGR 88 (108)
T ss_dssp EECS
T ss_pred EeCC
Confidence 8774
No 195
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=87.54 E-value=1.7 Score=37.24 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=51.0
Q ss_pred CcceEEEeCCCCCCccccccCcEEEEccc----cHHHHHHHHhhhc----CCC-cceeeeeCCC-ceeeeeeeeecCCEE
Q 003951 700 NKKRITIHMPYQNTRTSQRHLGKLIVLPD----SIEELLRIAGEKF----GGY-KFTKVVNAEN-AEIDDICVIRDGDHL 769 (784)
Q Consensus 700 ~~~Rvti~~~~~~~~~~~~~~gk~~~~p~----s~~ell~~a~~~~----~~~-~~~~~~~~~g-a~id~i~~ird~~~l 769 (784)
..+||.+|.+...-- .|..+.+.. |++.||..-.+.+ +.. ...++++.+| -.|.+++-+.||+.
T Consensus 14 kak~I~~yrNGD~~~-----~G~~~~v~~~~~~tfd~LL~~lT~~Ls~~v~lp~GVR~lyt~~G~~~I~sl~dL~dG~~- 87 (113)
T 1mg4_A 14 KAKKVRFYRNGDRYF-----KGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGES- 87 (113)
T ss_dssp CSEEEEEEETTCSSC-----CCEEEEECTTTCSSHHHHHHHHHHHHCCSSSSTTCCCEEEETTSSCBCCSGGGCCTTCE-
T ss_pred CceEEEEEECCCCCC-----CCEEEEECccccCCHHHHHHHHHHHHhhcCCCCcceeEEEcCCCCeEcCCHHHhhCCCE-
Confidence 457999999965432 666666544 9999999876644 322 3568999999 99999999999994
Q ss_pred EEEec
Q 003951 770 FLLQN 774 (784)
Q Consensus 770 ~~~~~ 774 (784)
|++++
T Consensus 88 YVc~~ 92 (113)
T 1mg4_A 88 YVCGS 92 (113)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 44443
No 196
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.13 E-value=1.8 Score=35.26 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=36.6
Q ss_pred EccccHHHHHHHHhhhcCCC-ccee-eeeCCCceeeeeeeee--cCCEEEEEecCCcc
Q 003951 725 VLPDSIEELLRIAGEKFGGY-KFTK-VVNAENAEIDDICVIR--DGDHLFLLQNEGET 778 (784)
Q Consensus 725 ~~p~s~~ell~~a~~~~~~~-~~~~-~~~~~ga~id~i~~ir--d~~~l~~~~~~~~~ 778 (784)
....|++||+.-|.++|++. .... ++.+||-+|||.+.-+ +++-+|++-..+++
T Consensus 25 V~A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp~nT~lmvL~~ge~ 82 (91)
T 2eel_A 25 VMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQK 82 (91)
T ss_dssp EEESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSCSSEEEEEEETTCC
T ss_pred EEcCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCCCCCEEEEEcCCCc
Confidence 46689999999999999963 2344 5567899998876543 24444444444443
No 197
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=81.75 E-value=2.6 Score=49.83 Aligned_cols=56 Identities=13% Similarity=0.272 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhccccccCCcccCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003951 245 NRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYIIGNMTNLVVH 301 (784)
Q Consensus 245 ~~Y~~slyw~i~tltTvGyGDi~p~~~~e~i~~i~~~l~g~~~~a~~ig~i~~ii~~ 301 (784)
.....++||++.+++..| ++..|.+...+++.++++++++++.++..+++++++..
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346789999999999999 78899999999999999999999999999999998865
No 198
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=75.02 E-value=5 Score=33.20 Aligned_cols=56 Identities=25% Similarity=0.167 Sum_probs=37.8
Q ss_pred EEEEccccHHHHHHHHhhhcCCCc----ceeeeeCCCceeeeeeeee---cCCEEEEEecCCcc
Q 003951 722 KLIVLPDSIEELLRIAGEKFGGYK----FTKVVNAENAEIDDICVIR---DGDHLFLLQNEGET 778 (784)
Q Consensus 722 k~~~~p~s~~ell~~a~~~~~~~~----~~~~~~~~ga~id~i~~ir---d~~~l~~~~~~~~~ 778 (784)
|.-....|++||+.-|.++|++.. .+-++.+||-+|||.+.-+ |+-+|.++ ..+++
T Consensus 31 k~GV~A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL-~~ge~ 93 (100)
T 1f2r_I 31 QHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVAL-ACNEK 93 (100)
T ss_dssp EEEEEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEE-CSSSC
T ss_pred EEeEEcCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCCCCCEEEEE-cCCCc
Confidence 344567899999999999999632 2345678999998776533 44444444 44444
No 199
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=65.55 E-value=2.6 Score=36.22 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=35.0
Q ss_pred EEEccccHHHHHHHHhhhcCCCccee-eeeCCCceeeeeeee---ecCCEEEEE
Q 003951 723 LIVLPDSIEELLRIAGEKFGGYKFTK-VVNAENAEIDDICVI---RDGDHLFLL 772 (784)
Q Consensus 723 ~~~~p~s~~ell~~a~~~~~~~~~~~-~~~~~ga~id~i~~i---rd~~~l~~~ 772 (784)
.-....|++||+.-|.++|+...+.. ++.+||-+|||.+.- -|+-+|.++
T Consensus 49 ~GV~A~SL~EL~~K~~~~l~l~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL 102 (122)
T 1d4b_A 49 KGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVL 102 (122)
T ss_dssp EEEEECCSSTHHHHHHHHHSCCSSCEEEETTTTEEECSTHHHHHSSSCCCCCEE
T ss_pred EeEEcCCHHHHHHHHHHHhccCCCcEEEEEeCCcEEechhHhhcCCCCCEEEEe
Confidence 33567899999999999999753444 555789999877643 344444444
No 200
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=54.42 E-value=9.5 Score=33.60 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=36.1
Q ss_pred EccccHHHHHHHHhhhcCCCc---cee-eeeCCCceeeeeeee---ecCCEEEEEecCCc
Q 003951 725 VLPDSIEELLRIAGEKFGGYK---FTK-VVNAENAEIDDICVI---RDGDHLFLLQNEGE 777 (784)
Q Consensus 725 ~~p~s~~ell~~a~~~~~~~~---~~~-~~~~~ga~id~i~~i---rd~~~l~~~~~~~~ 777 (784)
....|++||+.-|.++|++.. +.. ++.+||-+|||.+.- -|+-+|.++ ..++
T Consensus 79 V~A~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp~nT~LmvL-~~ge 137 (145)
T 1ibx_B 79 VAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVAL-ASNE 137 (145)
T ss_dssp CCCSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSCSSCBEEEE-CSSC
T ss_pred EEcCCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCCCCCEEEEE-CCCC
Confidence 367899999999999999733 334 566889999876643 355555444 4433
No 201
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=54.08 E-value=41 Score=28.31 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=44.6
Q ss_pred CcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEE
Q 003951 393 MDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILR 469 (784)
Q Consensus 393 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~ 469 (784)
+....++||+.+-..--....+++|++|++++.. +|+ ...+++||.+=- ....+..+++.+++.++.
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~i-----p~~~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA---QRRLHQGDLLYL-----GAGAAHDVNAITNTSLLV 104 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE---EEEECTTEEEEE-----CTTCCEEEEESSSEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE---EEEECCCCEEEE-----CCCCcEEEEeCCCcEEEE
Confidence 3445678888776655556789999999999874 443 356899997643 222334566667766543
No 202
>4atu_I Neuronal migration protein doublecortin; hydrolase, microtubule-associated protein; HET: GDP GTP; 8.30A {Homo sapiens} PDB: 1uf0_A
Probab=49.55 E-value=3.5 Score=43.34 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred CcceEEEeCCCCCCccccccCcEEEEccc----cHHHHHHHHhhhcCCCc--ceeeeeCCCceeeee-eeeecCCEEEEE
Q 003951 700 NKKRITIHMPYQNTRTSQRHLGKLIVLPD----SIEELLRIAGEKFGGYK--FTKVVNAENAEIDDI-CVIRDGDHLFLL 772 (784)
Q Consensus 700 ~~~Rvti~~~~~~~~~~~~~~gk~~~~p~----s~~ell~~a~~~~~~~~--~~~~~~~~ga~id~i-~~ird~~~l~~~ 772 (784)
.+++|+|+.+..... .+.-+.|+. |+|.+|+..+++.++.. ..||++-+|.+|+.+ ++++||+. |++
T Consensus 191 kPk~I~V~rNGd~~~-----~~~rvlLn~r~~~sfe~vL~~ite~l~l~~GaVrkLyT~~G~~v~~l~d~l~~~~~-yVA 264 (373)
T 4atu_I 191 RPKLVTIIRSGVKPR-----KAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDV-FIA 264 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccEEEEEeCCCCCC-----CCEEEEECCccccCHHHHHHHHHhhcCCCCCceeEEEcCCCCEecCHHHHhcCCCE-EEE
Confidence 468899998864222 333333433 89999999999998532 578999999999988 45888875 555
Q ss_pred ec
Q 003951 773 QN 774 (784)
Q Consensus 773 ~~ 774 (784)
++
T Consensus 265 ~G 266 (373)
T 4atu_I 265 CG 266 (373)
T ss_dssp --
T ss_pred ec
Confidence 44
No 203
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=49.19 E-value=53 Score=31.61 Aligned_cols=70 Identities=7% Similarity=0.183 Sum_probs=51.6
Q ss_pred cCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEec
Q 003951 392 DMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLS 471 (784)
Q Consensus 392 ~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~ 471 (784)
.+....+.||+.+-..--+.+.+++|++|++++.. +|+. ..+.+||++=- ....+..+++.+++.++.+.
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i--~~~~---~~l~~Gd~~~~-----p~~~~H~~~a~~~~~~l~i~ 107 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI--ENNK---KTISNGDFLEI-----TANHNYSIEARDNLKLIEIG 107 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE--SSCE---EEEETTEEEEE-----CSSCCEEEEESSSEEEEEEE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE--CCEE---EEECCCCEEEE-----CCCCCEEEEECCCcEEEEEE
Confidence 34455688999888777778899999999999985 4443 46789987532 22335577888999998773
No 204
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=48.67 E-value=41 Score=28.04 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=39.4
Q ss_pred ccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEe
Q 003951 397 YFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRL 470 (784)
Q Consensus 397 ~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l 470 (784)
.+.||+.+-........+++|++|.+.+.. +|+ ...+++||++=-- .+.++. +++.+.+.++.+
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~---~~~l~~Gd~i~i~---~~~~H~--~~~~~~~~~~~i 107 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ---KIDLVPEDVLMVP---AHKIHA--IAGKGRFKMLQI 107 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE---EEEECTTCEEEEC---TTCCBE--EEEEEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE--CCE---EEEecCCCEEEEC---CCCcEE--EEeCCCcEEEEE
Confidence 355666554444456789999999999874 443 3568999976422 234443 344456666544
No 205
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=47.12 E-value=83 Score=25.96 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=42.8
Q ss_pred CcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEe
Q 003951 393 MDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRL 470 (784)
Q Consensus 393 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l 470 (784)
+....+.||..+-..--....+++|++|.+.+.. +|+. ..+.+||++=.- .+.+ ..+++.+.++++.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~~---~~l~~Gd~~~ip---~~~~--H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQET---YRVAEGQTIVMP---AGIP--HALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTEE---EEEETTCEEEEC---TTSC--EEEEESSCEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCEE---EEECCCCEEEEC---CCCC--EEEEECCCceEEEE
Confidence 3445677887665444446789999999999874 4433 468899987421 1333 34555566666554
No 206
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=46.83 E-value=33 Score=29.32 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=41.1
Q ss_pred cccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEe
Q 003951 396 EYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRL 470 (784)
Q Consensus 396 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l 470 (784)
..+.||..+-..- ..+++++|++|++.+.. +|+ ...+++||++---. +.++.+.... +.++++.+
T Consensus 45 ~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~--~g~---~~~l~~GD~v~ip~---g~~H~~~~~~-~~~~~l~v 109 (119)
T 3lwc_A 45 GRYAPGQSLTETM-AVDDVMIVLEGRLSVST--DGE---TVTAGPGEIVYMPK---GETVTIRSHE-EGALTAYV 109 (119)
T ss_dssp EEECTTCEEEEEC-SSEEEEEEEEEEEEEEE--TTE---EEEECTTCEEEECT---TCEEEEEEEE-EEEEEEEE
T ss_pred EEECCCCCcCccC-CCCEEEEEEeCEEEEEE--CCE---EEEECCCCEEEECC---CCEEEEEcCC-CCeEEEEE
Confidence 4567787665543 67889999999999975 453 34689999875322 3444433322 45555544
No 207
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=44.42 E-value=24 Score=32.54 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=39.2
Q ss_pred cccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEe
Q 003951 396 EYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRL 470 (784)
Q Consensus 396 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l 470 (784)
..++||...-..--...++++|++|++++... +|+ ...+++||.+ . -.+.++.+.-...+.++++.+
T Consensus 84 v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld-~ge---~~~L~~GDsi-~---~~g~~H~~~N~g~~~ar~l~V 150 (172)
T 3es1_A 84 VDMLPGKESPMHRTNSIDYGIVLEGEIELELD-DGA---KRTVRQGGII-V---QRGTNHLWRNTTDKPCRIAFI 150 (172)
T ss_dssp EEECTTCBCCCBCCSEEEEEEEEESCEEEECG-GGC---EEEECTTCEE-E---ECSCCBEEECCSSSCEEEEEE
T ss_pred EEECCCCCCCCeecCceEEEEEEeCEEEEEEC-CCe---EEEECCCCEE-E---eCCCcEEEEeCCCCCEEEEEE
Confidence 34566654332223345688999999999741 243 2468999998 3 235555544444455555543
No 208
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=44.31 E-value=39 Score=30.97 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=36.1
Q ss_pred CCCCeEEEEEecEEEEEEeecC---ceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecH
Q 003951 409 EAPTDLYILVSGAVDLIHYVDG---QDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSR 472 (784)
Q Consensus 409 ~~~~~ly~I~~G~v~v~~~~~g---~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~ 472 (784)
++.++++++++|.+.+...++| ....-..+++||+|=--. +.++ +-++...+..+.+.+
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~---gvpH--sP~r~~e~v~lviEr 113 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPG---NVPH--SPVRFADTVGIVVEQ 113 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECT---TCCE--EEEECTTCEEEEEEE
T ss_pred CCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCC---CCCc--CCcccCCcEEEEEEe
Confidence 3456899999999999865545 123345789999984321 3333 222235566665554
No 209
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=43.48 E-value=46 Score=31.87 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003951 167 LNMLRLWRLRRVSSLFARL 185 (784)
Q Consensus 167 l~llrllRl~r~~~~~~~l 185 (784)
+|++|++|+.|+.++++++
T Consensus 99 lr~lRllRllR~~r~~~~~ 117 (223)
T 1orq_C 99 FRLVRLLRFLRILLIISRG 117 (223)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443
No 210
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=42.05 E-value=82 Score=26.03 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=42.9
Q ss_pred CcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEe
Q 003951 393 MDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRL 470 (784)
Q Consensus 393 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l 470 (784)
+....++||..+-..--...++++|++|.+.+.. +|+ ...+.+||++=.- .+. +..+++.+.+.++.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~--~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV---IKVLTAGDSFFVP---PHV--DHGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE---EEEECTTCEEEEC---TTC--CEEEEESSCEEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE---EEEeCCCCEEEEC---cCC--ceeeEeCCCcEEEEE
Confidence 3445577887654333346789999999999875 443 3568999985321 133 344555667777665
No 211
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=40.96 E-value=1.1e+02 Score=27.62 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=49.2
Q ss_pred ccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEE-ccceEEEEe---
Q 003951 395 AEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRT-TELSQILRL--- 470 (784)
Q Consensus 395 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a-~~~~~l~~l--- 470 (784)
...+.||..+-..--...++++|++|.+.+.. +|+ ...+.+||++=-- .+.++.+.... .+.+.++.+
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~ip---~~~~H~~~n~~~~~~~~~l~i~~~ 131 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR---VEPLTPLDCVYIA---PHAWHQIHATGANEPLGFLCIVDS 131 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE---EEEECTTCEEEEC---TTCCEEEEEESSSCCEEEEEEEES
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE---EEEECCCCEEEEC---CCCcEEEEeCCCCCCEEEEEEEeC
Confidence 44566776554333346789999999999874 443 4568999987422 23444333333 334444433
Q ss_pred -------cHHHHHHHHHhcHHHHHH
Q 003951 471 -------SRTSLMNSIQANMEDGRI 488 (784)
Q Consensus 471 -------~~~~f~~ll~~~p~~~~~ 488 (784)
+...-..-+..+|..+..
T Consensus 132 ~~d~p~~p~~~~~~~l~~~~~~~~~ 156 (167)
T 3ibm_A 132 DRDRPQRPDADDLARMCADPAVARR 156 (167)
T ss_dssp SCCCCBCCCHHHHHHHTTSHHHHHH
T ss_pred CcCcccCCCHHHHHHHHcChHHHHh
Confidence 233444445666766553
No 212
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=39.49 E-value=32 Score=31.85 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=36.3
Q ss_pred CcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeee
Q 003951 393 MDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 393 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 445 (784)
+....+.||......-...+++++|++|++++.....+.. ....+++||++=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~-~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc-EEEEECCCCEEE
Confidence 4455678887766553345789999999999874333322 356899999884
No 213
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=37.55 E-value=53 Score=30.13 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=26.5
Q ss_pred CCCeEEEEEecEEEEEEeecCceeEEEEecCCCeee
Q 003951 410 APTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 410 ~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 445 (784)
+.++++++++|.+.+...++|+. .-..+++||+|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~-~~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRR-ERADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEE-EEEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCce-eeEEECCCCEEE
Confidence 45789999999999886554533 345789999984
No 214
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=36.58 E-value=86 Score=28.48 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=48.8
Q ss_pred ccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEE------
Q 003951 395 AEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQIL------ 468 (784)
Q Consensus 395 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~------ 468 (784)
...+.||..+-..--...++++|++|++++.. +|+ ...+.+||++=--+ +.++.+.....+.+.++
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~---~~~l~~GD~i~ip~---g~~H~~~n~~~~~~~~l~i~~~~ 128 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA---VSAVAPYDLVTIPG---WSWHQFRAPADEALGFLCMVNAE 128 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE---EEEECTTCEEEECT---TCCEEEECCTTSCEEEEEEEESS
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEEEECC---CCcEEeEeCCCCCEEEEEEEccC
Confidence 34566776554433445679999999999874 443 35688999873221 23332222222233332
Q ss_pred ----EecHHHHHHHHHhcHHHHHHH
Q 003951 469 ----RLSRTSLMNSIQANMEDGRIV 489 (784)
Q Consensus 469 ----~l~~~~f~~ll~~~p~~~~~~ 489 (784)
.++..+...-+..+|.+...+
T Consensus 129 ~d~p~~p~~~~l~~l~~~~~~~~~~ 153 (166)
T 3jzv_A 129 RDKPQLPTEADLAMLRADDAVAAFL 153 (166)
T ss_dssp CCCCBCCCHHHHHHHHTSHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHhCcchhhhh
Confidence 234455556667777766544
No 215
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=31.80 E-value=1.1e+02 Score=24.30 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=40.1
Q ss_pred cccccccCCeEEecCCC-CCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEe
Q 003951 394 DAEYFPPKEDVILQNEA-PTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRL 470 (784)
Q Consensus 394 ~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l 470 (784)
....+.||..+-..--. ..++++|++|.+.+.. +|+ ...+.+||++=-- .+.++.+.....+.+.++.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~H~~~~~~~~~~~~~~v 100 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV--GEE---EALLAPGMAAFAP---AGAPHGVRNESASPALLLVV 100 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE--TTE---EEEECTTCEEEEC---TTSCEEEECCSSSCEEEEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEEEEC---CCCcEEeEeCCCCCEEEEEE
Confidence 34457777766443333 3579999999999874 343 3568899987321 23333333222334555543
No 216
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=31.37 E-value=1e+02 Score=27.62 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=30.4
Q ss_pred ccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCee
Q 003951 395 AEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAF 444 (784)
Q Consensus 395 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 444 (784)
...+.||..+-..--...++++|++|++++.. +|+ ...+.+||++
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~---~~~l~~Gd~i 92 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET---ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE---EEEEETTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEE
Confidence 33456666544333345679999999999874 443 3567899977
No 217
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=31.22 E-value=81 Score=29.24 Aligned_cols=68 Identities=6% Similarity=0.018 Sum_probs=39.5
Q ss_pred ccccCCeEE---ecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEc---cceEEEEe
Q 003951 397 YFPPKEDVI---LQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTT---ELSQILRL 470 (784)
Q Consensus 397 ~~~~~e~I~---~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~---~~~~l~~l 470 (784)
.++||...- .......++++|++|.+.+....+| +.....+++||++=.- .+.++ .++.. +.+.++.+
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~-~~~~~~l~~GD~~~~~---~~~~H--~~~n~~~~~~~~~l~v 196 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKE-NPKEALLPTGASMFVE---EHVPH--AFTAAKGTGSAKLIAV 196 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTT-SCEEEEECTTCEEEEC---TTCCE--EEEESTTSCCEEEEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcC-CcccEEECCCCEEEeC---CCCce--EEEecCCCCCeEEEEE
Confidence 466766543 1222346899999999998863211 1134579999987432 23444 34444 55666554
No 218
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=31.18 E-value=75 Score=29.83 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=35.0
Q ss_pred CcccccccCCeEEecCCC-CCeEEEEEecEEEEEEeecC---ceeEEEEecCCCeee
Q 003951 393 MDAEYFPPKEDVILQNEA-PTDLYILVSGAVDLIHYVDG---QDKVLGKAVAGDAFG 445 (784)
Q Consensus 393 ~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~~~g---~~~~~~~l~~G~~fG 445 (784)
+....+.||...-..--. .+++++|++|++++.....+ .+.....+++||++=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 344567788765443333 47999999999998742221 343356799999884
No 219
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=30.78 E-value=1e+02 Score=25.88 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=40.2
Q ss_pred CcccccccCCeEEecCCC-CCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEE
Q 003951 393 MDAEYFPPKEDVILQNEA-PTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILR 469 (784)
Q Consensus 393 ~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~ 469 (784)
+....++||..+-..--. ...+++|++|.+.+.. .+|+. ..+++||++=. -.+.++.+.....+.+.++.
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-~~~~~---~~l~~Gd~~~i---~~~~~H~~~n~~~~~~~~l~ 111 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ-GNGIV---THLKAGDIAIA---KPGQVHGAMNSGPEPFIFVS 111 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC-STTCE---EEEETTEEEEE---CTTCCCEEEECSSSCEEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE-CCCeE---EEeCCCCEEEE---CCCCEEEeEeCCCCCEEEEE
Confidence 334567788776544444 3679999999998863 13433 46789997632 22444443333334444443
No 220
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=30.36 E-value=34 Score=34.25 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 003951 169 MLRLWRLRRVSSLFA 183 (784)
Q Consensus 169 llrllRl~r~~~~~~ 183 (784)
++|++|+.|+.++.+
T Consensus 115 ~lr~~RilR~lrl~~ 129 (285)
T 3rvy_A 115 ILRVLRVLRLFRLVT 129 (285)
T ss_dssp HHHHHGGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 221
>4atu_I Neuronal migration protein doublecortin; hydrolase, microtubule-associated protein; HET: GDP GTP; 8.30A {Homo sapiens} PDB: 1uf0_A
Probab=28.92 E-value=1e+02 Score=32.10 Aligned_cols=70 Identities=10% Similarity=0.163 Sum_probs=50.0
Q ss_pred CCcceEEEeCCCCCCccccccCcEEEEccc----cHHHHHHHHhhhc----CCC-cceeeeeCCCc-eeeeeeeeecCCE
Q 003951 699 SNKKRITIHMPYQNTRTSQRHLGKLIVLPD----SIEELLRIAGEKF----GGY-KFTKVVNAENA-EIDDICVIRDGDH 768 (784)
Q Consensus 699 ~~~~Rvti~~~~~~~~~~~~~~gk~~~~p~----s~~ell~~a~~~~----~~~-~~~~~~~~~ga-~id~i~~ird~~~ 768 (784)
...+||++|.+.-.-- .|+.+.|.. |++.||..-.+++ +++ ...++++.+|. .|.+++-+.||+.
T Consensus 63 ~kAKrV~fyrNGD~~f-----~G~~~~V~~~r~~tfd~lL~~lT~~Ls~~v~LP~GVR~i~tp~G~~~i~~ld~LedG~~ 137 (373)
T 4atu_I 63 KKAKKVRFYRNGDRYF-----KGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGES 137 (373)
T ss_dssp -CCEEEEEEESSCSSC-----CCEEEEECTTTCSSHHHHHHHHHHHSCCSSSCTTSCSEEEETTSSSEECSGGGCCTTEE
T ss_pred ccceEEEEEeCCCCCC-----CCeEEEECCcccCCHHHHHHHHHHHhhccCCCCceeEEEEcCCCCeecCcHHHhccCCE
Confidence 3458999999865432 677666554 9999998866553 332 34579999986 7999999999985
Q ss_pred EEEEec
Q 003951 769 LFLLQN 774 (784)
Q Consensus 769 l~~~~~ 774 (784)
|++++
T Consensus 138 -YV~s~ 142 (373)
T 4atu_I 138 -YVCSS 142 (373)
T ss_dssp -EEEES
T ss_pred -EEEeC
Confidence 44443
No 222
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=28.68 E-value=1.1e+02 Score=24.80 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=32.5
Q ss_pred cccccccCCeEEec--CCC-CCeEEEEEecEEEEEEeecCceeEEEEecCCCeee
Q 003951 394 DAEYFPPKEDVILQ--NEA-PTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 394 ~~~~~~~~e~I~~~--g~~-~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 445 (784)
....+.||..+-.. --. ...+++|++|.+.+.. +++ ...+.+||++=
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH---TQALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE---EEEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEEE
Confidence 34457788766543 333 5789999999999875 343 35688999774
No 223
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=28.19 E-value=72 Score=26.95 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=47.3
Q ss_pred CcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccc-eEEEEe-
Q 003951 393 MDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTEL-SQILRL- 470 (784)
Q Consensus 393 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~-~~l~~l- 470 (784)
+....+.||..+-..--....+++|++|.+.+.. +|+ ...+.+||++=.- .+.++ .+++.+. +.++.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~H--~~~~~~~~~~~l~v~ 112 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE---TRVLRPGMAYTIP---GGVRH--RARTFEDGCLVLDIF 112 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE---EEEECTTEEEEEC---TTCCE--EEECCTTCEEEEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE---EEEeCCCCEEEEC---CCCcE--EeEECCCCEEEEEEE
Confidence 3445677887765554455789999999999875 443 2568999976322 23333 3344444 554432
Q ss_pred --cHHHHHHHHH
Q 003951 471 --SRTSLMNSIQ 480 (784)
Q Consensus 471 --~~~~f~~ll~ 480 (784)
.+++|...++
T Consensus 113 ~p~~~d~~~~~~ 124 (126)
T 4e2g_A 113 SPPREDYARMAE 124 (126)
T ss_dssp ESCCHHHHHHHH
T ss_pred CCCCcchhhhhc
Confidence 4566665543
No 224
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=27.88 E-value=68 Score=35.12 Aligned_cols=59 Identities=8% Similarity=0.024 Sum_probs=41.8
Q ss_pred HHHHHHcCcccccccCCeEEecCCC-CCeEEEEEecEEEEEE-eecCceeEEEEecCCCee
Q 003951 386 LFQLVSDMDAEYFPPKEDVILQNEA-PTDLYILVSGAVDLIH-YVDGQDKVLGKAVAGDAF 444 (784)
Q Consensus 386 l~~l~~~~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~f 444 (784)
+..+-..+....+.||..+-..--+ .+++++|++|.+.+.. ..+|+......+.+||+|
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 4445555666778898866544333 5799999999999873 445555555679999988
No 225
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=27.67 E-value=33 Score=37.89 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003951 167 LNMLRLWRLRRVSSLFAR 184 (784)
Q Consensus 167 l~llrllRl~r~~~~~~~ 184 (784)
++.+|++|++|+.++++-
T Consensus 305 ~~~lrvlRllRvlRilkL 322 (514)
T 2r9r_B 305 RRVVQIFRIMRILRIFKL 322 (514)
T ss_dssp HHHHHHHHHHGGGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666666666633
No 226
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=27.33 E-value=95 Score=25.50 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=31.0
Q ss_pred ccccccCCeEEecCCCCCeEEEEEecEEEEEEeec-CceeEEEEecCCCeee
Q 003951 395 AEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVD-GQDKVLGKAVAGDAFG 445 (784)
Q Consensus 395 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~-g~~~~~~~l~~G~~fG 445 (784)
...+.||+.-.. -...++++|++|++.+.. + |+. ..+++||.+=
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i--~~g~~---~~l~~GD~i~ 79 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTT--EDGKK---YVIEKGDLVT 79 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEE--TTCCE---EEEETTCEEE
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEE--CCCCE---EEECCCCEEE
Confidence 445667765443 346789999999999875 3 433 4688999874
No 227
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=26.62 E-value=2.2e+02 Score=25.00 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=38.7
Q ss_pred ecCCCCCeEEEEEecEEEEEEeec--C-ceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecHH
Q 003951 406 LQNEAPTDLYILVSGAVDLIHYVD--G-QDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRT 473 (784)
Q Consensus 406 ~~g~~~~~ly~I~~G~v~v~~~~~--g-~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~ 473 (784)
..-+..|++|+|++|.+.+..... + .+.-...+++|+++--- ..-...-.|.+.|.++.+...
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP-----kGveH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP-----AECWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC-----TTCEEEEEECTTCEEEEEEES
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC-----CCccCcccCCCceEEEEEEeC
Confidence 344557899999999999884321 1 11224568999987431 111234455677887776543
No 228
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=25.82 E-value=75 Score=34.53 Aligned_cols=53 Identities=8% Similarity=0.116 Sum_probs=38.0
Q ss_pred cCcccccccCCeEEecCCC-CCeEEEEEecEEEEEE-eecCceeEEEEecCCCee
Q 003951 392 DMDAEYFPPKEDVILQNEA-PTDLYILVSGAVDLIH-YVDGQDKVLGKAVAGDAF 444 (784)
Q Consensus 392 ~~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~f 444 (784)
.+....+.||..+-..--+ .+++++|++|...+.. ..+|+......+++||+|
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 4455678888866544333 5789999999999874 345555555679999988
No 229
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=25.25 E-value=1.2e+02 Score=25.78 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhh
Q 003951 208 AVHCAGCFNYLIAD 221 (784)
Q Consensus 208 ~~h~~aci~y~i~~ 221 (784)
++-..++++|.++.
T Consensus 39 ~~~~~a~~~~~~E~ 52 (122)
T 2ih3_C 39 VLLAGSYLAVLAER 52 (122)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHhhheeee
Confidence 34455667777764
No 230
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=25.25 E-value=81 Score=25.75 Aligned_cols=68 Identities=4% Similarity=-0.122 Sum_probs=39.2
Q ss_pred cccCCeEEecCCCCCeEEEEEecEEEEEEeecC-ceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecHHHH
Q 003951 398 FPPKEDVILQNEAPTDLYILVSGAVDLIHYVDG-QDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSRTSL 475 (784)
Q Consensus 398 ~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g-~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~~~f 475 (784)
..||+.....-+...++++|++|.+.+.. +| + ...+.+||++=-- .+.++... +.+.+.++.++....
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~~---~~~l~~Gd~~~ip---~~~~H~~~--~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDF--ADGG---SMTIREGEMAVVP---KSVSHRPR--SENGCSLVLIELSDP 103 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEE--TTSC---EEEECTTEEEEEC---TTCCEEEE--EEEEEEEEEEECC--
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEE--CCCc---EEEECCCCEEEEC---CCCcEeeE--eCCCeEEEEEECCCc
Confidence 34555332222223789999999999875 33 3 3568999987322 24444433 345677777765443
No 231
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=25.02 E-value=84 Score=34.26 Aligned_cols=60 Identities=10% Similarity=-0.024 Sum_probs=41.6
Q ss_pred HHHHHHcCcccccccCCeEEecCCC-CCeEEEEEecEEEEEE-eecCceeEEEEecCCCeee
Q 003951 386 LFQLVSDMDAEYFPPKEDVILQNEA-PTDLYILVSGAVDLIH-YVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 386 l~~l~~~~~~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fG 445 (784)
+..+-..+....+.||..+-..--+ .+++++|++|.+.+.. ..+|+...-..+.+||+|=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 4455456667778888866554333 5789999999999874 3345544446799999883
No 232
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=24.11 E-value=1.8e+02 Score=30.21 Aligned_cols=73 Identities=15% Similarity=-0.007 Sum_probs=43.9
Q ss_pred cccccccCCeEEecCCCC-CeEEEEEecEEEEEEe-ecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEe
Q 003951 394 DAEYFPPKEDVILQNEAP-TDLYILVSGAVDLIHY-VDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRL 470 (784)
Q Consensus 394 ~~~~~~~~e~I~~~g~~~-~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l 470 (784)
....+.||...-..--.. .++++|++|++++... .+|++ ....+++||+|=--+ +.++.+.....+.++++.+
T Consensus 260 ~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~-~~~~l~~GD~~~ip~---~~~H~~~n~~~~~~~~l~v 334 (385)
T 1j58_A 260 ALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHA-RTFNYQAGDVGYVPF---AMGHYVENIGDEPLVFLEI 334 (385)
T ss_dssp EEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEE-EEEEEESSCEEEECT---TCBEEEEECSSSCEEEEEE
T ss_pred EEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcE-EEEEEcCCCEEEECC---CCeEEEEECCCCCEEEEEE
Confidence 345677887765443344 7899999999998843 45532 245689999874322 3333333323345666555
No 233
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=23.84 E-value=1.5e+02 Score=28.37 Aligned_cols=67 Identities=19% Similarity=0.106 Sum_probs=45.1
Q ss_pred CcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEE-ccceEEEE
Q 003951 393 MDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRT-TELSQILR 469 (784)
Q Consensus 393 ~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a-~~~~~l~~ 469 (784)
+....++||+.+-..--....+++|++|++++.. +|+ ...+++||++=-- .+.+ ..+++ .+.++++.
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~---~~~l~~Gd~i~ip---~~~~--H~~~~~~~~~~~ll 222 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK---PFIVKKGESAVLP---ANIP--HAVEAETENFKMLL 222 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE---EEEEETTEEEEEC---TTSC--EEEECCSSCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE---EEEECCCCEEEEC---CCCc--EEEEeCCCCEEEEE
Confidence 3456788998876655556789999999999874 443 3568899976422 1333 45566 67776654
No 234
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=22.66 E-value=1e+02 Score=33.70 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=44.5
Q ss_pred HHHHHHHcCcccccccCCeEEecCC-CCCeEEEEEecEEEEE-EeecCceeEEEEecCCCeee
Q 003951 385 FLFQLVSDMDAEYFPPKEDVILQNE-APTDLYILVSGAVDLI-HYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 385 ~l~~l~~~~~~~~~~~~e~I~~~g~-~~~~ly~I~~G~v~v~-~~~~g~~~~~~~l~~G~~fG 445 (784)
.+..|-..+....+.||-++-..=- .++++.+|++|.+.+. ...+|+......+.+||+|=
T Consensus 388 ~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v 450 (531)
T 3fz3_A 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFI 450 (531)
T ss_dssp HHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 3555555666778888887765432 3678999999999987 44556666678899999983
No 235
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=22.51 E-value=1.1e+02 Score=31.55 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=33.9
Q ss_pred ccccccCCeEEecCCC-CCeEEEEEecEEEEEEee-cCceeEEEEecCCCeee
Q 003951 395 AEYFPPKEDVILQNEA-PTDLYILVSGAVDLIHYV-DGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 395 ~~~~~~~e~I~~~g~~-~~~ly~I~~G~v~v~~~~-~g~~~~~~~l~~G~~fG 445 (784)
...+.||...-..--. ..++++|++|++++.... +|+. ....+++||++=
T Consensus 56 ~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~-~~~~l~~GD~~~ 107 (361)
T 2vqa_A 56 YMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKV-EIADVDKGGLWY 107 (361)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCE-EEEEEETTEEEE
T ss_pred EEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcE-EEEEEcCCCEEE
Confidence 4456788765443333 679999999999988432 4433 346799999763
No 236
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=22.42 E-value=95 Score=32.49 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=34.6
Q ss_pred cccccccCCeEEecCCCCCeEEEEEecEEEEEEee-cCceeEEEEecCCCeee
Q 003951 394 DAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYV-DGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 394 ~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~-~g~~~~~~~l~~G~~fG 445 (784)
....+.||...-..--...++++|++|++++.... +|+. ....+++||++=
T Consensus 82 ~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~-~~~~l~~GD~~~ 133 (385)
T 1j58_A 82 VNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLWY 133 (385)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCE-EEEEEETTEEEE
T ss_pred EEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcE-EEEEeCCCCEEE
Confidence 34567788765443333678999999999988533 4543 234789999763
No 237
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=22.18 E-value=57 Score=26.30 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=30.3
Q ss_pred ccccccCCeEEecCCCC-CeEEEEEecEEEEEEeecCceeEEEEecCCCeeeh
Q 003951 395 AEYFPPKEDVILQNEAP-TDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGE 446 (784)
Q Consensus 395 ~~~~~~~e~I~~~g~~~-~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe 446 (784)
...++||...-..--.. ..+++|++|.+++.. ++.. ....+.+||.+=.
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~-~~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGS-VTSQLTRGVSYTR 71 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEE-EEEEECTTCCEEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCC-EEEEEcCCCEEEe
Confidence 34567776542222223 359999999999874 2211 2356899998743
No 238
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=21.77 E-value=90 Score=29.80 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=27.4
Q ss_pred cccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCee
Q 003951 398 FPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAF 444 (784)
Q Consensus 398 ~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 444 (784)
+.||..+=..--..+++|+|++|.+++... +|. ...+++||.+
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~-~g~---~~~l~pGd~v 181 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHLR-NAP---DLMLEPGQTR 181 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEET-TSC---CEEECTTCEE
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEEC-CCC---EEecCCCCEE
Confidence 444433323334567899999999988752 232 3467899876
No 239
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=21.63 E-value=1.3e+02 Score=31.10 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=35.4
Q ss_pred CcccccccCCeEEecCCCC-CeEEEEEecEEEEEE-eecCceeEEEEecCCCeee
Q 003951 393 MDAEYFPPKEDVILQNEAP-TDLYILVSGAVDLIH-YVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 393 ~~~~~~~~~e~I~~~g~~~-~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fG 445 (784)
+....+.||..+-..--.. .++++|++|++.+.. ..+|+ .....+++||+|=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~-~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGK-ASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTC-EEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCc-EEEEEECCCCEEE
Confidence 3455678887665433333 789999999999874 23444 2346789999884
No 240
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=21.62 E-value=95 Score=26.43 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=29.7
Q ss_pred cccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeeh
Q 003951 398 FPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGE 446 (784)
Q Consensus 398 ~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe 446 (784)
..||..-+.. +..+++++|++|.+.+.. ++|.. ..+++||.|--
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~-ddG~~---~~l~aGD~~~~ 92 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQ-ADADP---VKIGPGSIVSI 92 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEE-TTCCC---EEECTTEEEEE
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEe-CCCeE---EEECCCCEEEE
Confidence 4555544433 334589999999999874 34543 46899998854
No 241
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=21.60 E-value=3.3e+02 Score=22.56 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=43.3
Q ss_pred cccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEE--EEecHH
Q 003951 396 EYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQI--LRLSRT 473 (784)
Q Consensus 396 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l--~~l~~~ 473 (784)
..+.||...-..--...++++|++|.+.+.. +|+ ...+++||++=-- .+.++.......+.++. +.++.+
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~---~~~l~~Gd~~~i~---~~~~H~~~~~~~~~~~~~~i~f~~~ 110 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE---DFPVTKGDLIIIP---LDSEHHVINNNQEDFHFYTIWWDKE 110 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE---EEEEETTCEEEEC---TTCCEEEEECSSSCEEEEEEEECHH
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE---EEEECCCcEEEEC---CCCcEEeEeCCCCCEEEEEEEECHH
Confidence 3455665333222345679999999999875 443 3567899976422 23344333322344444 445665
Q ss_pred HHHHHHHh
Q 003951 474 SLMNSIQA 481 (784)
Q Consensus 474 ~f~~ll~~ 481 (784)
-+..++.+
T Consensus 111 ~~~~~~~~ 118 (128)
T 4i4a_A 111 STLNFLTR 118 (128)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554444
No 242
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=21.51 E-value=86 Score=33.72 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=38.0
Q ss_pred cCcccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeee
Q 003951 392 DMDAEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 392 ~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 445 (784)
.+....+.||..+-..--..+++++|++|+..+..-..+.. ....+++||++=
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC-EEEEecCCCEEE
Confidence 34456788888776664456789999999998874333333 467899999984
No 243
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=21.43 E-value=1.3e+02 Score=27.11 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=30.2
Q ss_pred ccccccCCeEE--ecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeee
Q 003951 395 AEYFPPKEDVI--LQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 395 ~~~~~~~e~I~--~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 445 (784)
...+.||.... ..-...+++++|++|++.+.. +++ ...+++||++=
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~--~~~---~~~l~~GD~i~ 94 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD--DQG---EHPMVPGDCAA 94 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE--TTE---EEEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE--CCE---EEEeCCCCEEE
Confidence 44566776432 222223689999999999874 443 35689999874
No 244
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=21.42 E-value=1.5e+02 Score=32.19 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHhhhccccccCCc--ccCCchhHHHHHHHHHHHHH
Q 003951 242 TLWNRYVTAMYWSITTLTTTGYGDL--HAENPREMLFDIFYMLFNLG 286 (784)
Q Consensus 242 ~~~~~Y~~slyw~i~tltTvGyGDi--~p~~~~e~i~~i~~~l~g~~ 286 (784)
++.++...|++-+++..||.||... ..-++...++.+++|++|-+
T Consensus 302 ~~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~ 348 (494)
T 3pjz_A 302 SPYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGC 348 (494)
T ss_dssp SHHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSC
T ss_pred CHHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCC
Confidence 4567888999999999999999744 33344456666777777653
No 245
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=21.30 E-value=2.3e+02 Score=22.28 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=32.6
Q ss_pred CeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEec
Q 003951 412 TDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLS 471 (784)
Q Consensus 412 ~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~ 471 (784)
..+++|++|.+.+.. +++. ..+.+||++=-- .+.++. +++.+.+.++.++
T Consensus 51 ~e~~~v~~G~~~~~~--~~~~---~~l~~Gd~~~ip---~~~~H~--~~~~~~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIAF--RDQN---ITLQAGEMYVIP---KGVEHK--PMAKEECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEEC--SSCE---EEEETTEEEEEC---TTCCBE--EEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEE--CCEE---EEEcCCCEEEEC---CCCeEe--eEcCCCCEEEEEE
Confidence 689999999998874 3433 457899876321 234443 3444677777765
No 246
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=21.26 E-value=1.9e+02 Score=27.93 Aligned_cols=70 Identities=14% Similarity=0.033 Sum_probs=43.4
Q ss_pred cCcccccccCCeEEe-cCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEE
Q 003951 392 DMDAEYFPPKEDVIL-QNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILR 469 (784)
Q Consensus 392 ~~~~~~~~~~e~I~~-~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~ 469 (784)
.+....++||..+=. .--...+.++|++|+..+.. +|+. ..+++||++--- .+.++.+.....+.++.+.
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~~---~~l~~GD~~~~~---~~~pH~~~n~g~~~~~yl~ 236 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EENY---YPVTAGDIIWMG---AHCPQWYGALGRNWSKYLL 236 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTEE---EEEETTCEEEEC---TTCCEEEEEESSSCEEEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCEE---EEcCCCCEEEEC---CCCCEEEEcCCCCCEEEEE
Confidence 445667888876653 23345689999999998874 4433 468999987432 2344444444444554443
No 247
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=21.12 E-value=1.5e+02 Score=24.99 Aligned_cols=46 Identities=7% Similarity=0.006 Sum_probs=30.8
Q ss_pred ccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeee
Q 003951 395 AEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFG 445 (784)
Q Consensus 395 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 445 (784)
...++||...-..--...++++|++|.+.+.. +++. ..+.+||++=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~~---~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK--EQGE---ETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC--SSCE---EEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE--CCEE---EEECCCCEEE
Confidence 34566666554333346789999999998874 3433 4678998773
No 248
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=20.58 E-value=99 Score=26.86 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=30.5
Q ss_pred ccccccCCeEEecCCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeeh
Q 003951 395 AEYFPPKEDVILQNEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGE 446 (784)
Q Consensus 395 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe 446 (784)
...+.||..-... ..+++++|++|++.+.. +|+. ..+++||.+--
T Consensus 61 ~~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~--~g~~---~~l~~GD~i~~ 105 (133)
T 2pyt_A 61 FMQWDNAFFPWTL--NYDEIDMVLEGELHVRH--EGET---MIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEEEC--SSEEEEEEEEEEEEEEE--TTEE---EEEETTCEEEE
T ss_pred EEEECCCCccccC--CCCEEEEEEECEEEEEE--CCEE---EEECCCcEEEE
Confidence 3456777432222 36789999999999875 4533 36899998853
No 249
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=20.42 E-value=1.4e+02 Score=29.68 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=38.8
Q ss_pred CCCCCeEEEEEecEEEEEEeecCceeEEEEecCCCeeehhhhhcCCCceeEEEEccceEEEEecH
Q 003951 408 NEAPTDLYILVSGAVDLIHYVDGQDKVLGKAVAGDAFGEIGVLYYRPQPFTVRTTELSQILRLSR 472 (784)
Q Consensus 408 g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~~l~~~~~~~tv~a~~~~~l~~l~~ 472 (784)
-+..+++|++++|.+.+-..++|+- .--.+++|++|=--. +.+ .+=++...|..+.|.+
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d~g~~-~~V~i~eGemfllP~---gv~--HsP~r~~et~gLviE~ 106 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLEQGKH-RDVVIRQGEIFLLPA---RVP--HSPQRFANTVGLVVER 106 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEETTEE-EEEEECTTEEEEECT---TCC--EEEEECTTCEEEEEEE
T ss_pred CCCCCeEEEEEeCeEEEEEEeCCce-eeEEECCCeEEEeCC---CCC--cCCcccCCeEEEEEee
Confidence 4456889999999999886555643 335689999884322 222 2333456777777764
Done!