BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003952
(784 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/452 (25%), Positives = 186/452 (41%), Gaps = 81/452 (17%)
Query: 259 VHRCGKWVKLAGTDLVPGDVVSIGRSSGQTGEDKSVPADMLILGGSAI-VNEAILTGEST 317
V R GKW + LVPGD+VSI + G+ +PAD +L G + V+++ LTGES
Sbjct: 134 VLRDGKWSEQEAAILVPGDIVSI-----KLGD--IIPADARLLEGDPLKVDQSALTGESL 186
Query: 318 PQWKVSIMGRETGEKLSARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLRTGFE 377
P + + G+++ F G+ Q G AVV+ TG
Sbjct: 187 P------VTKHPGQEV----------FSGSTCKQ-------------GEIEAVVIATGVH 217
Query: 378 TSQGKLMRTILFSTERVTANSWESGLFILFLVVFAVIAAGYVLKKGMEDP-TRSKYKLFL 436
T GK ++ ST +V ++ L + IA G V++ + P R KY+ +
Sbjct: 218 TFFGKAAH-LVDSTNQV--GHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGI 274
Query: 437 SCSLII-TSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDMCCFDKTGTL 495
L++ IP +P LS+ + L+++G I +D+ C DKTGTL
Sbjct: 275 DNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTL 334
Query: 496 TSDDMEFRGVVGLSNAELEDDMTKV---PVRTQEILASCHALVFVDNKLVGDPLEKAALK 552
T L+ ++ ++ +V V ++L V+N+ D AA+
Sbjct: 335 T-----------LNKLSVDKNLVEVFCKGVEKDQVLLFAAMASRVENQDAID----AAMV 379
Query: 553 GIDWSYKSDEKAMPKRGGGNAVQIVQRHHFASHLKRMSVV-VRVQEEFFAFVKGAPETIQ 611
G+ A PK ++ V F KR ++ + + KGAPE I
Sbjct: 380 GM--------LADPKEARA-GIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQIL 430
Query: 612 DRL---TDLPSSYIETYKKYTHQGSRVLALAFKSLPDMTVSDARSLHRDEVENGLTFAGF 668
+ DL + KY +G R LA+A + +P+ T ++ F G
Sbjct: 431 ELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKT--------KESPGAPWEFVGL 482
Query: 669 AVFNCPIREDSAKILSELKNSSQDLAMITGDQ 700
P R DSA+ + N ++ MITGDQ
Sbjct: 483 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQ 514
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 113/504 (22%), Positives = 202/504 (40%), Gaps = 76/504 (15%)
Query: 255 QTIMVHRCGKWVKLAGTDLVPGDVVSIGRSSGQTGEDKSVPADMLILGGSAI-VNEAILT 313
Q +V R G+ + + ++V GD+V + G D+ +PAD+ I+ + V+ + LT
Sbjct: 142 QQALVIRNGEKMSINAEEVVVGDLVEV------KGGDR-IPADLRIISANGCKVDNSSLT 194
Query: 314 GESTPQWKVSIMGRETGEKLSARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLR 373
GES PQ + E L R ++ F T ++ G +V+
Sbjct: 195 GESEPQTRSPDFTNEN--PLETR----NIAFFSTNCVE-------------GTARGIVVY 235
Query: 374 TGFETSQGKL--MRTILFSTERVTANSWESGLFILFLVVFAVIAAGYVLKKGMEDPTRSK 431
TG T G++ + + L + A E + I+ V + + ++L +E T +
Sbjct: 236 TGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILE-YTWLE 294
Query: 432 YKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDMCCFDK 491
+FL II + +P L +++ + + +AR+ + G C DK
Sbjct: 295 AVIFLIG--IIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDK 352
Query: 492 TGTLTSDDMEFRGV---VGLSNAELEDDMTKVP--------VRTQEILASCHALVFVDNK 540
TGTLT + M + + A+ ++ + V + I C+ VF N+
Sbjct: 353 TGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQ 412
Query: 541 ---------LVGDPLEKAALKGIDWSYKSDEKAMPKRGGGNAVQIVQRHHFASHLKRMSV 591
+ GD E A LK I+ S K M +R +IV+ +++ ++S+
Sbjct: 413 ENLPILKRAVAGDASESALLKCIELCCGS-VKEMRER----YTKIVEIPFNSTNKYQLSI 467
Query: 592 VVR---VQEEFFAFVKGAPETIQDRLT-------------DLPSSYIETYKKYTHQGSRV 635
+ +KGAPE I DR + +L ++ Y + G RV
Sbjct: 468 HKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERV 527
Query: 636 LALAFKSLPDMTVSDARSLHRDEVE---NGLTFAGFAVFNCPIREDSAKILSELKNSSQD 692
L LPD + D+V + L F G P R + + +++
Sbjct: 528 LGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIK 587
Query: 693 LAMITGDQALTACYVASQVHIVTK 716
+ M+TGD +TA +A V I+++
Sbjct: 588 VIMVTGDHPITAKAIAKGVGIISE 611
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 112/504 (22%), Positives = 201/504 (39%), Gaps = 76/504 (15%)
Query: 255 QTIMVHRCGKWVKLAGTDLVPGDVVSIGRSSGQTGEDKSVPADMLILGGSAI-VNEAILT 313
Q +V R G+ + + ++V GD+V + G D+ +PAD+ I+ + V+ + LT
Sbjct: 136 QQALVIRNGEKMSINAEEVVVGDLVEV------KGGDR-IPADLRIISANGCKVDNSSLT 188
Query: 314 GESTPQWKVSIMGRETGEKLSARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLR 373
GES PQ + E L R ++ F T ++ G +V+
Sbjct: 189 GESEPQTRSPDFTNEN--PLETR----NIAFFSTNCVE-------------GTARGIVVY 229
Query: 374 TGFETSQGKL--MRTILFSTERVTANSWESGLFILFLVVFAVIAAGYVLKKGMEDPTRSK 431
TG T G++ + + L + A E + I+ V + + ++L +E T +
Sbjct: 230 TGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEY-TWLE 288
Query: 432 YKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDMCCFDK 491
+FL II + +P L +++ + + +AR+ + G C K
Sbjct: 289 AVIFLIG--IIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXK 346
Query: 492 TGTLTSDDMEFRGV---VGLSNAELEDDMTKVP--------VRTQEILASCHALVFVDNK 540
TGTLT + M + + A+ ++ + V + I C+ VF N+
Sbjct: 347 TGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQ 406
Query: 541 ---------LVGDPLEKAALKGIDWSYKSDEKAMPKRGGGNAVQIVQRHHFASHLKRMSV 591
+ GD E A LK I+ S K M +R +IV+ +++ ++S+
Sbjct: 407 ENLPILKRAVAGDASESALLKCIELCCGS-VKEMRER----YTKIVEIPFNSTNKYQLSI 461
Query: 592 VVR---VQEEFFAFVKGAPETIQDRLT-------------DLPSSYIETYKKYTHQGSRV 635
+ +KGAPE I DR + +L ++ Y + G RV
Sbjct: 462 HKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERV 521
Query: 636 LALAFKSLPDMTVSDARSLHRDEVE---NGLTFAGFAVFNCPIREDSAKILSELKNSSQD 692
L LPD + D+V + L F G P R + + +++
Sbjct: 522 LGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIK 581
Query: 693 LAMITGDQALTACYVASQVHIVTK 716
+ M+TGD +TA +A V I+++
Sbjct: 582 VIMVTGDHPITAKAIAKGVGIISE 605
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 125/528 (23%), Positives = 200/528 (37%), Gaps = 106/528 (20%)
Query: 267 KLAGTDLVPGDVVSIGRSSGQTGEDKSVPADMLILGGSAI---VNEAILTGESTPQWKVS 323
++ D+VPGD+V + DK VPAD+ IL + V+++ILTGES K +
Sbjct: 140 RIKARDIVPGDIVEVAVG------DK-VPADIRILSIKSTTLRVDQSILTGESVSVIKHT 192
Query: 324 IMGRETGEKLSARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLRTGFETSQGKL 383
+ + +DK ++LF GT I G L +V TG T GK+
Sbjct: 193 ---EPVPDPRAVNQDKKNMLFSGTNIAA-------------GKALGIVATTGVSTEIGKI 236
Query: 384 MRTILFSTERVTANSWESGLF--ILFLVVFAVIAAGYVLKKG-MEDPT------RSKYKL 434
+ + + T + F L V+ + A +++ G DP R
Sbjct: 237 RDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYY 296
Query: 435 FLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDMCCFDKTGT 494
F + + IP LP ++ + +A++ + G + C DKTGT
Sbjct: 297 FKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGT 356
Query: 495 LTSDDM-------------------EFRGVVGLSNAELEDDMTKVPVRTQE--------- 526
LT++ M EF E E P+R+ +
Sbjct: 357 LTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELAT 416
Query: 527 ILASCH--ALVFVDNK----LVGDPLEKAALKGIDWS--YKSDEKAMPKRGGGNAVQIVQ 578
I A C+ +L F + K VG+ E A ++ + ++ + + K NA V
Sbjct: 417 ICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 476
Query: 579 RH--------HFASHLKRMSVVVRVQEEFFA------FVKGAPETIQDR-------LTDL 617
R F+ K MSV + A FVKGAPE + DR T +
Sbjct: 477 RQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRV 536
Query: 618 PSS------YIETYKKY--THQGSRVLALAFKSLP----DMTVSDARSLHRDEVENGLTF 665
P + + K++ R LALA + P +M + D+ E E LTF
Sbjct: 537 PMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFM--EYETDLTF 594
Query: 666 AGFAVFNCPIREDSAKILSELKNSSQDLAMITGDQALTACYVASQVHI 713
G P R++ + +++ + MITGD TA + ++ I
Sbjct: 595 VGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGI 642
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 125/528 (23%), Positives = 200/528 (37%), Gaps = 106/528 (20%)
Query: 267 KLAGTDLVPGDVVSIGRSSGQTGEDKSVPADMLILGGSAI---VNEAILTGESTPQWKVS 323
++ D+VPGD+V + DK VPAD+ IL + V+++ILTGES K +
Sbjct: 139 RIKARDIVPGDIVEVAVG------DK-VPADIRILSIKSTTLRVDQSILTGESVSVIKHT 191
Query: 324 IMGRETGEKLSARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLRTGFETSQGKL 383
+ + +DK ++LF GT I G L +V TG T GK+
Sbjct: 192 ---EPVPDPRAVNQDKKNMLFSGTNIAA-------------GKALGIVATTGVSTEIGKI 235
Query: 384 MRTILFSTERVTANSWESGLF--ILFLVVFAVIAAGYVLKKG-MEDPT------RSKYKL 434
+ + + T + F L V+ + A +++ G DP R
Sbjct: 236 RDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYY 295
Query: 435 FLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDMCCFDKTGT 494
F + + IP LP ++ + +A++ + G + C DKTGT
Sbjct: 296 FKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGT 355
Query: 495 LTSDDM-------------------EFRGVVGLSNAELEDDMTKVPVRTQE--------- 526
LT++ M EF E E P+R+ +
Sbjct: 356 LTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELAT 415
Query: 527 ILASCH--ALVFVDNK----LVGDPLEKAALKGIDWS--YKSDEKAMPKRGGGNAVQIVQ 578
I A C+ +L F + K VG+ E A ++ + ++ + + K NA V
Sbjct: 416 ICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 475
Query: 579 RH--------HFASHLKRMSVVVRVQEEFFA------FVKGAPETIQDR-------LTDL 617
R F+ K MSV + A FVKGAPE + DR T +
Sbjct: 476 RQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRV 535
Query: 618 PSS------YIETYKKY--THQGSRVLALAFKSLP----DMTVSDARSLHRDEVENGLTF 665
P + + K++ R LALA + P +M + D+ E E LTF
Sbjct: 536 PMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFM--EYETDLTF 593
Query: 666 AGFAVFNCPIREDSAKILSELKNSSQDLAMITGDQALTACYVASQVHI 713
G P R++ + +++ + MITGD TA + ++ I
Sbjct: 594 VGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGI 641
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 125/527 (23%), Positives = 200/527 (37%), Gaps = 105/527 (19%)
Query: 267 KLAGTDLVPGDVVSIGRSSGQTGEDKSVPADMLIL---GGSAIVNEAILTGESTPQWKVS 323
++ D+VPGD+V + DK VPAD+ IL + V+++ILTGES K +
Sbjct: 139 RIKARDIVPGDIVEVAVG------DK-VPADIRILTIKSTTLRVDQSILTGESVSVIKHT 191
Query: 324 IMGRETGEKLSARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLRTGFETSQGKL 383
+ + +DK ++LF GT I G + +V TG T GK+
Sbjct: 192 ---EPVPDPRAVNQDKKNMLFSGTNIAA-------------GKAIGIVATTGVGTEIGKI 235
Query: 384 MRTILFSTERVTANSWESGLF--ILFLVVFAVIAAGYVLKKG-MEDPT------RSKYKL 434
+ + + T + F L V+ + A +++ G DP R
Sbjct: 236 RDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYY 295
Query: 435 FLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDMCCFDKTGT 494
F + + IP LP ++ + +A++ + G + C DKTGT
Sbjct: 296 FKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGT 355
Query: 495 LTSDDM-------------------EFRGVVGLSNAELEDDMTKVPVRTQE--------- 526
LT++ M EF E E PVR+ +
Sbjct: 356 LTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQYDGLVELAT 415
Query: 527 ILASCH--ALVFVDNK----LVGDPLEKAALKGIDWS--YKSDEKAMPKRGGGNAVQIVQ 578
I A C+ +L F + K VG+ E A ++ + ++ + + K NA V
Sbjct: 416 ICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 475
Query: 579 RH--------HFASHLKRMSVVVRVQEEFFA-----FVKGAPETIQDR-------LTDLP 618
R F+ K MSV + A FVKGAPE + DR T +P
Sbjct: 476 RQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVP 535
Query: 619 SS------YIETYKKY--THQGSRVLALAFKSLP----DMTVSDARSLHRDEVENGLTFA 666
+ + K++ R LALA + P +M + D+ E E LTF
Sbjct: 536 MTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFM--EYETDLTFV 593
Query: 667 GFAVFNCPIREDSAKILSELKNSSQDLAMITGDQALTACYVASQVHI 713
G P R++ + +++ + MITGD TA + ++ I
Sbjct: 594 GVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGI 640
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 118/508 (23%), Positives = 193/508 (37%), Gaps = 84/508 (16%)
Query: 255 QTIMVHRCGKWVKLAGTDLVPGDVVSIGRSSGQTGEDKSVPADMLILGGSAI-VNEAILT 313
Q +V R G+ + +V GD+V + G D+ +PAD+ I+ V+ + LT
Sbjct: 172 QQALVIRDGEKSTINAEFVVAGDLVEV------KGGDR-IPADLRIISAHGCKVDNSSLT 224
Query: 314 GESTPQWKVSIMGRETGEKLSARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVV-- 371
GES PQ + E L R ++ F T ++ T + + T D + +
Sbjct: 225 GESEPQTRSPEFSSEN--PLETR----NIAFFSTNCVEGTA-RGVVVYTGDRTVMGRIAT 277
Query: 372 LRTGFETSQGKLMRTILFSTERVTANSWESGL--FILFLVVFAVIAAGYVLKKGMEDPTR 429
L +G E + + I +T + G+ FIL L++ GY + +
Sbjct: 278 LASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLIL------GYSWLEAV----- 326
Query: 430 SKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDMCCF 489
+FL II + +P L +++ + + +AR+ + G C
Sbjct: 327 ----IFLIG--IIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICS 380
Query: 490 DKTGTLTSDDM------------EFRGVVGLSNAELEDDMTKVPVRTQEILASCHALVF- 536
DKTGTLT + M E S A D + I A C+ VF
Sbjct: 381 DKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAF-DKTSATWSALSRIAALCNRAVFQ 439
Query: 537 --VDN------KLVGDPLEKAALKGIDWSYKSDEKAMPKRGGGNAVQI----VQRHHFAS 584
DN + GD E A LK I+ S + M R V+I ++ +
Sbjct: 440 AGQDNVPILKRSVAGDASESALLKCIELCCGS-VQGMRDR-NPKIVEIPFNSTNKYQLSI 497
Query: 585 HLKRMSVVVRVQEEFFAFVKGAPETIQDRLT-------------DLPSSYIETYKKYTHQ 631
H S R + +KGAPE I DR + D+ ++ Y +
Sbjct: 498 HENEKSSESR----YLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGL 553
Query: 632 GSRVLALAFKSLPDMTVSDARSLHRDEVE---NGLTFAGFAVFNCPIREDSAKILSELKN 688
G RVL +LP+ ++ DE L F G P R + + ++
Sbjct: 554 GERVLGFCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRS 613
Query: 689 SSQDLAMITGDQALTACYVASQVHIVTK 716
+ + M+TGD +TA +A V I+++
Sbjct: 614 AGIKVIMVTGDHPITAKAIAKGVGIISE 641
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 124/528 (23%), Positives = 199/528 (37%), Gaps = 106/528 (20%)
Query: 267 KLAGTDLVPGDVVSIGRSSGQTGEDKSVPADMLILGGSAI---VNEAILTGESTPQWKVS 323
++ D+VPGD+V + DK VPAD+ IL + V+++ILTGES K +
Sbjct: 139 RIKARDIVPGDIVEVAVG------DK-VPADIRILSIKSTTLRVDQSILTGESVSVIKHT 191
Query: 324 IMGRETGEKLSARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLRTGFETSQGKL 383
+ + +DK ++LF GT I G L +V TG T GK+
Sbjct: 192 ---EPVPDPRAVNQDKKNMLFSGTNIAA-------------GKALGIVATTGVSTEIGKI 235
Query: 384 MRTILFSTERVTANSWESGLF--ILFLVVFAVIAAGYVLKKG-MEDPT------RSKYKL 434
+ + + T + F L V+ + A +++ G DP R
Sbjct: 236 RDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYY 295
Query: 435 FLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDMCCFDKTGT 494
F + + IP LP ++ + +A++ + G + C KTGT
Sbjct: 296 FKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGT 355
Query: 495 LTSDDM-------------------EFRGVVGLSNAELEDDMTKVPVRTQE--------- 526
LT++ M EF E E P+R+ +
Sbjct: 356 LTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELAT 415
Query: 527 ILASCH--ALVFVDNK----LVGDPLEKAALKGIDWS--YKSDEKAMPKRGGGNAVQIVQ 578
I A C+ +L F + K VG+ E A ++ + ++ + + K NA V
Sbjct: 416 ICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 475
Query: 579 RH--------HFASHLKRMSVVVRVQEEFFA------FVKGAPETIQDR-------LTDL 617
R F+ K MSV + A FVKGAPE + DR T +
Sbjct: 476 RQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRV 535
Query: 618 PSS------YIETYKKY--THQGSRVLALAFKSLP----DMTVSDARSLHRDEVENGLTF 665
P + + K++ R LALA + P +M + D+ E E LTF
Sbjct: 536 PMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFM--EYETDLTF 593
Query: 666 AGFAVFNCPIREDSAKILSELKNSSQDLAMITGDQALTACYVASQVHI 713
G P R++ + +++ + MITGD TA + ++ I
Sbjct: 594 VGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGI 641
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 105/471 (22%), Positives = 179/471 (38%), Gaps = 86/471 (18%)
Query: 258 MVHRCGKWVKLAGTDLVPGDVVSIGRSSGQTGEDKSVPADMLILGGSAIVNEAILTGEST 317
+V R G ++ ++VPGD++ Q E +PAD G + ++A L + +
Sbjct: 181 VVLRDGTLKEIEAPEVVPGDIL-------QVEEGTIIPAD-----GRIVTDDAFLQVDQS 228
Query: 318 PQWKVSIMGRETGEKLSARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLRTGFE 377
TGE L+ + K +F + + + G V+ TG
Sbjct: 229 AL---------TGESLAVDKHKGDQVFASSAVKR-------------GEAFVVITATGDN 266
Query: 378 TSQGKLMRTILFSTERVTANSWESGLF----------ILFLVVFAVIAAGYVLKKGMEDP 427
T G+ + V A S SG F +L LV+F ++ +V +P
Sbjct: 267 TFVGR-------AAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIV-WVSSFYRSNP 318
Query: 428 TRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDMC 487
+ L+ ++I +P LP ++ + LA++ + I V++
Sbjct: 319 IVQILEFTLAITII---GVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEIL 375
Query: 488 CFDKTGTLTSDDMEFRGVVGLSNAELEDDMTKVPVRTQEILASCHALVFVDNKLVG-DPL 546
C DKTGTLT + + ++ + ED M L +C A K G D +
Sbjct: 376 CSDKTGTLTKNKLSLHDPYTVAGVDPEDLM----------LTACLA---ASRKKKGIDAI 422
Query: 547 EKAALKGIDWSYKSDEKAMPKRGGGNAVQIVQRHHFASHLKRMSVVVRV-QEEFFAFVKG 605
+KA LK + + Y + + K +++Q H F K++ VV Q E VKG
Sbjct: 423 DKAFLKSLKY-YPRAKSVLSKY------KVLQFHPFDPVSKKVVAVVESPQGERITCVKG 475
Query: 606 APETIQDRLTDLPSSYIETYKKYTHQGSRVLALAFKSLPDMTVSDARSLHRDEVENGLTF 665
AP + + + E + Y ++ + F+SL + R E
Sbjct: 476 APLFVLKTVEEDHPIPEEVDQAYKNKVAEFATRGFRSL---------GVARKRGEGSWEI 526
Query: 666 AGFAVFNCPIREDSAKILSELKNSSQDLAMITGDQALTACYVASQVHIVTK 716
G P R D+ K + E K + M+TGD A + Q+ + T
Sbjct: 527 LGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTN 577
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 113/515 (21%), Positives = 199/515 (38%), Gaps = 98/515 (19%)
Query: 255 QTIMVHRCGKWVKLAGTDLVPGDVVSIGRSSGQTGEDKSVPADMLILGGSA-IVNEAILT 313
Q V R G ++ LV GD+V + G D+ VPAD+ IL V+ + LT
Sbjct: 177 QQATVIRDGDKFQINADQLVVGDLVEM------KGGDR-VPADIRILQAQGRKVDNSSLT 229
Query: 314 GESTPQWKVSIMGRETGEKLSARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVV-- 371
GES PQ + E+ L R ++ F T L+ T + + T D + +
Sbjct: 230 GESEPQTRSPECTHES--PLETR----NIAFFSTMCLEGTA-QGLVVNTGDRTIIGRIAS 282
Query: 372 LRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFAVIAA--GYVLKKGMEDPTR 429
L +G E + + I + + +GL ILF F ++A GY + M
Sbjct: 283 LASGVENEKTPIAIEIEHFVDII------AGLAILFGATFFIVAMCIGYTFLRAM----- 331
Query: 430 SKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDMCCF 489
F++ I+ + +P L +++ ++ + LA + + G + C
Sbjct: 332 ---VFFMA---IVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICS 385
Query: 490 DKTGTLTSDDMEFRGV---VGLSNAELEDDMTKVPVRTQ--------EILASCHALVFVD 538
DKTGTLT + M + + +A+ +D + +L C+ F
Sbjct: 386 DKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKS 445
Query: 539 NK---------LVGDPLEKAALKGIDWSYKSDEKAMPKRGGGNAVQIVQRHHFASHL--- 586
+ ++GD E A LK + + GNA+ +R +
Sbjct: 446 GQDAVPVPKRIVIGDASETALLKFSELTL------------GNAMGYRERFPKVCEIPFN 493
Query: 587 --KRMSVVVRVQEE-----FFAFVKGAPETIQDRLT-------DLP------SSYIETYK 626
+ + + E+ +KGAPE + +R + +LP ++ Y
Sbjct: 494 STNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYL 553
Query: 627 KYTHQGSRVLA-----LAFKSLPDMTVSDARSLHRDEVENGLTFAGFAVFNCPIREDSAK 681
G RVL L+ K P D +++ +GL+FAG P R
Sbjct: 554 SLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFP--TSGLSFAGLVSMIDPPRATVPD 611
Query: 682 ILSELKNSSQDLAMITGDQALTACYVASQVHIVTK 716
+ + + + + M+TGD +TA +A+ V I+++
Sbjct: 612 AVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISE 646
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 123/310 (39%), Gaps = 57/310 (18%)
Query: 217 EYWYY--SLFTLFMLFMFESTMAKSRLKTLTEIRR-VRVDNQTIMVHRCGKWVKLAGTDL 273
EY +Y S+ L L + + A+++ +T I++ V + +T +V R GK + + ++
Sbjct: 170 EYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEV 229
Query: 274 VPGDVVSIGRSSGQTGEDKSVPADMLILGGSAIVNEAILTGESTPQWKVSIMGRETGEKL 333
GD+V + + GE +P D +++ G + V+E++++GE P
Sbjct: 230 AVGDIVIV-----RPGE--KIPVDGVVVEGESYVDESMISGEPVP--------------- 267
Query: 334 SARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAV-VLRTGFETSQGKLMRTILFS-- 390
+L+ D+ F + G L + R G ET ++++ + +
Sbjct: 268 ---------------VLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMG 312
Query: 391 ----TERVTANSWESGLFILFLVVFAVIAAGYVLKKGMEDPTRSKYKLFLSCSLIITSVI 446
+R+ + + LV + Y + P LF +LI V+
Sbjct: 313 SKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA---PL-----LFAFTTLIAVLVV 364
Query: 447 --PPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDMCCFDKTGTLTSDDMEFRG 504
P + A+ + A GI + A KV FDKTGTLT E
Sbjct: 365 ACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTD 424
Query: 505 VVGLSNAELE 514
+V L+ E E
Sbjct: 425 LVPLNGDERE 434
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 123/310 (39%), Gaps = 57/310 (18%)
Query: 217 EYWYY--SLFTLFMLFMFESTMAKSRLKTLTEIRR-VRVDNQTIMVHRCGKWVKLAGTDL 273
EY +Y S+ L L + + A+++ +T I++ V + +T +V R GK + + ++
Sbjct: 92 EYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEV 151
Query: 274 VPGDVVSIGRSSGQTGEDKSVPADMLILGGSAIVNEAILTGESTPQWKVSIMGRETGEKL 333
GD+V + + GE +P D +++ G + V+E++++GE P
Sbjct: 152 AVGDIVIV-----RPGE--KIPVDGVVVEGESYVDESMISGEPVP--------------- 189
Query: 334 SARRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAV-VLRTGFETSQGKLMRTILFS-- 390
+L+ D+ F + G L + R G ET ++++ + +
Sbjct: 190 ---------------VLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMG 234
Query: 391 ----TERVTANSWESGLFILFLVVFAVIAAGYVLKKGMEDPTRSKYKLFLSCSLIITSVI 446
+R+ + + LV + Y + P LF +LI V+
Sbjct: 235 SKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA---PL-----LFAFTTLIAVLVV 286
Query: 447 --PPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDMCCFDKTGTLTSDDMEFRG 504
P + A+ + A GI + A KV FDKTGTLT E
Sbjct: 287 ACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTD 346
Query: 505 VVGLSNAELE 514
+V L+ E E
Sbjct: 347 LVPLNGDERE 356
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|B Chain B, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|C Chain C, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|D Chain D, Methionine-Adenosyltransferase From Entamoeba Histolytica
Length = 415
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
Query: 639 AFKSLPDMTVSDARSLHRDEVENGLTFAGFAVFNCPIREDSAKILSELKNSSQDLAMITG 698
A +P + +S+ D+ G + +V +C + + S I + ++ + G
Sbjct: 80 AVIDIPKIVRGVVKSIGYDDTNKGFDYQTCSVLSC-VEQQSQDIAKGVHVEKKEEDIGAG 138
Query: 699 DQALTACYVASQ-------VHIV-TKPVLILCPVKNGKVYEWVSPDETEKIQYSEKEVEG 750
DQ + Y + H++ TK +L L + + W+ PD ++ +EVEG
Sbjct: 139 DQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVEG 198
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 528 LASCHALVFVDNKL-VGDPL-EKAALKGIDWSYKSDEKAMPKRGGGNAVQIVQRHHFASH 585
L + H + +V N V DPL E+A GIDW D + R A++++ H + +
Sbjct: 72 LDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAA 131
Query: 586 LKRMSVVVRVQEEFFAFVKGAPETIQD 612
++ VV + E+ A GA ++D
Sbjct: 132 TDAIAEVVEMVEKLLA--SGAAYIVED 156
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 250 VRVDNQTIMVHRCGKWVKLAGTDLVPGDVVSIGRSSGQTGEDKSVPADMLILGGSAIVNE 309
V + +T +V R GK + + ++ GD+V + + GE +P D +++ G + V+E
Sbjct: 7 VGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIV-----RPGE--KIPVDGVVVEGESYVDE 59
Query: 310 AILTGESTPQWK 321
++++GE P K
Sbjct: 60 SMISGEPVPVLK 71
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 22/49 (44%)
Query: 466 ARRGIFCTEPFRIPFAGKVDMCCFDKTGTLTSDDMEFRGVVGLSNAELE 514
A GI + A KV FDKTGTLT E +V L+ E E
Sbjct: 14 AELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERE 62
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 22/49 (44%)
Query: 466 ARRGIFCTEPFRIPFAGKVDMCCFDKTGTLTSDDMEFRGVVGLSNAELE 514
A GI + A KV FDKTGTLT E +V L+ E E
Sbjct: 14 AELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERE 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,417,017
Number of Sequences: 62578
Number of extensions: 977377
Number of successful extensions: 2051
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2007
Number of HSP's gapped (non-prelim): 35
length of query: 784
length of database: 14,973,337
effective HSP length: 107
effective length of query: 677
effective length of database: 8,277,491
effective search space: 5603861407
effective search space used: 5603861407
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)