BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003954
(784 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
pdb|3A01|F Chain F, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
Length = 67
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 91 GPPRKKKYHR--HTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ 148
P RK++ +R T Q++ELE F +PD R EL+ ++GL +I+ WFQNRR +
Sbjct: 1 APKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAK 60
Query: 149 MKTQ 152
+ Q
Sbjct: 61 WRKQ 64
>pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna
Length = 58
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
T Q++ELE F +PD R EL+ ++GL +I+ WFQNRR + + Q
Sbjct: 7 TSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57
>pdb|3A02|A Chain A, Crystal Structure Of Aristaless Homeodomain
Length = 60
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
T Q++ELE F +PD R EL+ ++GL +I+ WFQNRR + + Q
Sbjct: 7 TSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57
>pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|B Chain B, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|C Chain C, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
Length = 81
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 94 RKKKYHRHT--PHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151
RK++ R T Q+ ELE F+ +PD R EL++R L +I+ WFQNRR +++
Sbjct: 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 75
Query: 152 Q 152
Q
Sbjct: 76 Q 76
>pdb|3A01|A Chain A, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
pdb|3A01|E Chain E, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
Length = 93
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 88 NEDGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRT 147
N P RKK T Q+ ELE F + + +R+ L+R L + Q+K WFQNRRT
Sbjct: 11 NRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRT 70
Query: 148 QMKTQ 152
+ + Q
Sbjct: 71 KWRRQ 75
>pdb|1PUF|A Chain A, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To
Dna
Length = 77
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+KK +T HQ ELE F + +R E++R L L +Q+K WFQNRR +MK
Sbjct: 14 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 69
>pdb|1B8I|A Chain A, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
Length = 81
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153
R++ +T +Q ELE F + ++R E++ L L +QIK WFQNRR ++K ++
Sbjct: 20 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79
Query: 154 E 154
+
Sbjct: 80 Q 80
>pdb|3D1N|I Chain I, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|J Chain J, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|K Chain K, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|L Chain L, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|M Chain M, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|N Chain N, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|O Chain O, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|P Chain P, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
Length = 151
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 52 GEQFDPSVVGRIREEEFESRSGSDNVEGASGDDQEANEDGPPRKKKYHR--HTPHQIQEL 109
++ P + + E E ++ G N+ G G P KK+ R TP I+ L
Sbjct: 57 AQKLKPVLEKWLNEAELRNQEGQQNLXEFVG--------GEPSKKRKRRTSFTPQAIEAL 108
Query: 110 ESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
++F++ P P ++ +E ++ L + + ++ WF NRR +K
Sbjct: 109 NAYFEKNPLPTGQEITEXAKELNYDREVVRVWFSNRRQTLK 149
>pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4490c
Length = 75
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 95 KKKYHR--HTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
KK+ +R T +Q++ELE F++ +PD R +L+ R L +++ WFQNRR + + +
Sbjct: 8 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67
>pdb|1ZQ3|P Chain P, Nmr Solution Structure Of The Bicoid Homeodomain Bound To
The Consensus Dna Binding Site Taatcc
Length = 68
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
GP R + T QI ELE F + + + ++LS +L L + Q+K WF+NRR + K
Sbjct: 1 GPRRTRT--TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHK 58
Query: 151 TQMERHEN 158
Q ++H++
Sbjct: 59 IQSDQHKD 66
>pdb|2L7M|P Chain P, Solution Structure Of The Pitx2 Homeodomain R24h Mutant
Length = 68
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
G R+++ H T Q+QELE+ F+ +PD R E++ L +++ WF+NRR + +
Sbjct: 1 GSQRRQRTH-FTSQQLQELEATFQRNHYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWR 59
Query: 151 TQME 154
+ E
Sbjct: 60 KREE 63
>pdb|2L7F|P Chain P, Solution Structure Of The Pitx2 Homeodomain
pdb|2LKX|A Chain A, Nmr Structure Of The Homeodomain Of Pitx2 In Complex With
A Taatcc Dna Binding Site
Length = 68
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
G R+++ H T Q+QELE+ F+ +PD R E++ L +++ WF+NRR + +
Sbjct: 1 GSQRRQRTH-FTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWR 59
Query: 151 TQME 154
+ E
Sbjct: 60 KREE 63
>pdb|2DMQ|A Chain A, Solution Structure Of The Homeobox Domain Of LimHOMEOBOX
Protein Lhx9
Length = 80
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 104 HQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHEN 158
HQ++ ++S+F +PD K +L+++ GL + ++ WFQN R + + + R EN
Sbjct: 17 HQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQEN 71
>pdb|2DMU|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Goosecoid
Length = 70
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
T Q++ LE+ F+E +PD R +L+R++ L ++++ WF+NRR + +
Sbjct: 15 TDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWR 63
>pdb|2LP0|A Chain A, The Solution Structure Of Homeodomain-Protein Complex
Length = 60
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+KK +T +Q ELE F + +R E++R L L +Q+K WFQNRR +MK
Sbjct: 2 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMK 57
>pdb|1AHD|P Chain P, Determination Of The Nmr Solution Structure Of An
Antennapedia Homeodomain-Dna Complex
pdb|2HOA|A Chain A, Structure Determination Of The Antp(C39->s) Homeodomain
From Nuclear Magnetic Resonance Data In Solution Using A
Novel Strategy For The Structure Calculation With The
Programs Diana, Caliba, Habas And Glomsa
Length = 68
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
RK+ +T +Q ELE F + ++R E++ L L +QIK WFQNRR + K +
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60
>pdb|9ANT|A Chain A, Antennapedia Homeodomain-Dna Complex
pdb|9ANT|B Chain B, Antennapedia Homeodomain-Dna Complex
Length = 62
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
RK+ +T +Q ELE F + ++R E++ L L +QIK WFQNRR + K +
Sbjct: 3 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 61
>pdb|3CMY|A Chain A, Structure Of A Homeodomain In Complex With Dna
Length = 61
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
T Q++ELE F+ +PD R EL++R L +++ WF NRR + + Q
Sbjct: 10 TAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 60
>pdb|3HDD|A Chain A, Engrailed Homeodomain Dna Complex
pdb|3HDD|B Chain B, Engrailed Homeodomain Dna Complex
Length = 60
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+ Q+ L+ F E + E++R +LS LGL QIK WFQN+R ++K
Sbjct: 9 SSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIK 57
>pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|1HDD|D Chain D, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|2JWT|A Chain A, Solution Structure Of Engrailed Homeodomain Wt
Length = 61
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+ Q+ L+ F E + E++R +LS LGL QIK WFQN+R ++K
Sbjct: 11 SSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIK 59
>pdb|1HOM|A Chain A, Determination Of The Three-Dimensional Structure Of The
Antennapedia Homeodomain From Drosophila In Solution By
1h Nuclear Magnetic Resonance Spectroscopy
Length = 68
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
RK+ +T +Q ELE F + ++R E++ L L +QIK WFQNRR + K +
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 60
>pdb|1FTT|A Chain A, Thyroid Transcription Factor 1 Homeodomain (Rattus
Norvegicus)
Length = 68
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
R+K+ + Q+ ELE FK+ + +R L+ + L Q+K WFQN R +MK Q
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60
>pdb|1P7J|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52e
Length = 59
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+ Q+ L+ F E + E++R +LS LGL QIK WFQN R ++K
Sbjct: 9 SSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNERAKIK 57
>pdb|2R5Y|A Chain A, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|A Chain A, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 88
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
K++ +T +Q ELE F + ++R E++ L L +QIK WFQNRR + K +
Sbjct: 29 KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86
>pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52a
Length = 59
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+ Q+ L+ F E + E++R +LS LGL QIK WFQN R ++K
Sbjct: 9 SSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAKIK 57
>pdb|3RKQ|A Chain A, Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna
pdb|3RKQ|B Chain B, Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna
Length = 58
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
R+K + Q+ ELE FK+ + +R +L+ L L S Q+K WFQNRR + K
Sbjct: 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
>pdb|2HDD|A Chain A, Engrailed Homeodomain Q50k Variant Dna Complex
pdb|2HDD|B Chain B, Engrailed Homeodomain Q50k Variant Dna Complex
Length = 61
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+ Q+ L+ F E + E++R +LS LGL QIK WF+N+R ++K
Sbjct: 11 SSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIK 59
>pdb|1ENH|A Chain A, Structural Studies Of The Engrailed Homeodomain
Length = 54
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQM 149
+ Q+ L+ F E + E++R +LS LGL QIK WFQN+R ++
Sbjct: 7 SSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKI 54
>pdb|1FTZ|A Chain A, Nuclear Magnetic Resonance Solution Structure Of The Fushi
Tarazu Homeodomain From Drosophila And Comparison With
The Antennapedia Homeodomain
Length = 70
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154
K+ +T +Q ELE F + ++R +++ L L +QIK WFQNRR MK++ +
Sbjct: 4 KRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRR--MKSKKD 61
Query: 155 R 155
R
Sbjct: 62 R 62
>pdb|2P81|A Chain A, Engrailed Homeodomain Helix-Turn-Helix Motif
Length = 44
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 113 FKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
F E + E++R +LS LGL QIK WFQN+R ++K
Sbjct: 5 FNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIK 42
>pdb|1DU0|A Chain A, Engrailed Homeodomain Q50a Variant Dna Complex
pdb|1DU0|B Chain B, Engrailed Homeodomain Q50a Variant Dna Complex
Length = 57
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+ Q+ L+ F E + E++R +LS LGL QIK WF N+R ++K
Sbjct: 7 SSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFANKRAKIK 55
>pdb|1NK2|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, 20 STRUCTURES
pdb|1NK3|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, MINIMIZED AVERAGE
Structure
pdb|1VND|A Chain A, VndNK-2 Protein (Homeodomain), Nmr
Length = 77
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 90 DGPPRKKKYHR--HTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRT 147
DG P KK+ R T Q ELE F++ + +R L+ + L Q+K WFQN R
Sbjct: 3 DGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRY 62
Query: 148 QMK 150
+ K
Sbjct: 63 KTK 65
>pdb|1QRY|A Chain A, Homeobox Protein Vnd (Ventral Nervous System Defective
Protein)
Length = 80
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 90 DGPPRKKKYHR--HTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRT 147
DG P KK+ R T Q ELE F++ + +R L+ + L Q+K WFQN R
Sbjct: 6 DGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLTSLIRLTPTQVKIWFQNHRY 65
Query: 148 QMK 150
+ K
Sbjct: 66 KTK 68
>pdb|1SAN|A Chain A, The Des(1-6)antennapedia Homeodomain: Comparison Of The
Nmr Solution Structure And The Dna Binding Affinity With
The Intact Antennapedia Homeodomain
Length = 62
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 101 HTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
+T +Q ELE F + ++R E++ L L +QIK WFQNRR + K +
Sbjct: 3 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 54
>pdb|2K40|A Chain A, Nmr Structure Of Hesx-1 Homeodomain Double Mutant R31lE42L
Length = 67
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
T +QI+ LE+ F+ +P +L+++L LE +I+ WFQNRR ++K
Sbjct: 9 TQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLK 57
>pdb|1ZTR|A Chain A, Solution Structure Of Engrailed Homeodomain L16a Mutant
Length = 61
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+ Q+ + F E + E++R +LS LGL QIK WFQN+R +++
Sbjct: 11 SSEQLARAKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIR 59
>pdb|2DJN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Dlx-5
Length = 70
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
G +K ++ Q+ L+ F++ + +R+EL+ LGL Q+K WFQN+R+++K
Sbjct: 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIK 63
>pdb|2HOS|A Chain A, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOS|B Chain B, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOT|A Chain A, Phage Selected Homeodomain Bound To Modified Dna
pdb|2HOT|B Chain B, Phage Selected Homeodomain Bound To Modified Dna
Length = 63
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
G K+ + Q+ L+ F E + E++R +LS LGL Q+K WF+N R ++K
Sbjct: 1 GSDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIK 60
>pdb|1IG7|A Chain A, Msx-1 HomeodomainDNA COMPLEX STRUCTURE
Length = 58
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
T Q+ LE F++ + +R+E S L L Q+K WFQNRR + K
Sbjct: 8 TTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56
>pdb|2L9R|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Homeobox
Protein Nkx-3.1 From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr6470a
Length = 69
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 105 QIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
Q+ ELE F + +R+ L++ L L Q+K WFQNRR + K +
Sbjct: 15 QVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62
>pdb|2M34|A Chain A, Nmr Structure Of The Homeodomain Transcription Factor Gbx1
From Homo Sapiens
Length = 71
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
G +++ T Q+ ELE F + +RS+++ L L Q+K WFQNRR + K
Sbjct: 4 GGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK 63
>pdb|3A03|A Chain A, Crystal Structure Of Hox11l1 Homeodomain
Length = 56
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 105 QIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
Q+ ELE F + +R+ L++ L + Q+K WFQNRRT+ + Q
Sbjct: 8 QVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55
>pdb|3L1P|A Chain A, Pou Protein:dna Complex
pdb|3L1P|B Chain B, Pou Protein:dna Complex
Length = 155
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 109 LESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
LE+ F + P P +Q + ++ +LGLE ++ WF NRR + K
Sbjct: 111 LETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGK 152
>pdb|2H1K|A Chain A, Crystal Structure Of The Pdx1 Homeodomain In Complex With
Dna
pdb|2H1K|B Chain B, Crystal Structure Of The Pdx1 Homeodomain In Complex With
Dna
Length = 63
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
K+ +T Q+ ELE F + +R EL+ L L + IK WFQNRR + K +
Sbjct: 4 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61
>pdb|2DA2|A Chain A, Solution Structure Of The Second Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 70
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
R T +Q++ L+ FF +P + + +LS L L ++ I WFQN R + +
Sbjct: 13 RFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKAR 63
>pdb|1B72|A Chain A, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 97
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
T Q+ ELE F + +R E++ L L Q+K WFQNRR + K +
Sbjct: 42 TTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92
>pdb|1OCP|A Chain A, Solution Structure Of Oct3 Pou-Homeodomain
Length = 67
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 109 LESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
LE+ F +CP P +Q + ++ +LGLE ++ WF NRR + K
Sbjct: 23 LETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGK 64
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
pdb|2R5Y|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 63
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 94 RKKKYHRHTPHQIQEL--ESFFKEC--PHPDEKQRSELSRRLGLESKQIKFWFQNRRTQM 149
R+K+ R+ Q E+ E F+ P+P E+ + EL+R+ G+ Q+ WF N+R +
Sbjct: 2 RRKR--RNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRY 59
Query: 150 KTQM 153
K +
Sbjct: 60 KKNI 63
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain
Length = 64
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 100 RHTPHQIQEL--ESFFKEC--PHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
RH Q E+ E F+ P+P E+ + EL+++ G+ Q+ WF N+R + K
Sbjct: 8 RHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 62
>pdb|1JGG|A Chain A, Even-Skipped Homeodomain Complexed To At-Rich Dna
pdb|1JGG|B Chain B, Even-Skipped Homeodomain Complexed To At-Rich Dna
Length = 60
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
T Q+ LE F + + +R EL+ +L L IK WFQNRR + K Q
Sbjct: 9 TRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59
>pdb|2CUE|A Chain A, Solution Structure Of The Homeobox Domain Of The Human
Paired Box Protein Pax-6
Length = 80
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
T QI+ LE F+ +PD R L+ ++ L +I+ WF NRR + + +
Sbjct: 15 TQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65
>pdb|1K61|A Chain A, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|B Chain B, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|C Chain C, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|D Chain D, Matalpha2 Homeodomain Bound To Dna
Length = 60
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 99 HRHTPHQIQELESFFK---ECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151
HR T ++ LES+F E P+ D K L + L QIK W NRR + KT
Sbjct: 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>pdb|2E1O|A Chain A, Solution Structure Of Rsgi Ruh-028, A Homeobox Domain From
Human Cdna
Length = 70
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
R + Q ELE F+ + +R L++ L L +Q+K WFQNRR + +
Sbjct: 13 RFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWR 63
>pdb|1MNM|C Chain C, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|D Chain D, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 87
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 99 HRHTPHQIQELESFFK---ECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151
HR T ++ LES+F E P+ D K L + L QIK W NRR + KT
Sbjct: 32 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87
>pdb|1APL|C Chain C, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1APL|D Chain D, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1YRN|B Chain B, Crystal Structure Of The Mata1MATALPHA2 HOMEODOMAIN
Heterodimer Bound To Dna
pdb|1AKH|B Chain B, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 83
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 99 HRHTPHQIQELESFFK---ECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151
HR T ++ LES+F E P+ D K L + L QIK W NRR + KT
Sbjct: 7 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 62
>pdb|2KT0|A Chain A, Solution Structure Of Human Stem Cell Transcription Factor
Nanog Homeodomain Fragment
Length = 84
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 89 EDGPPRKKKYHR--HTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRR 146
ED P KK+ R + Q+ L F+ + +Q ELS L L KQ+K WFQN+R
Sbjct: 15 EDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQR 74
Query: 147 TQMK 150
+ K
Sbjct: 75 MKSK 78
>pdb|2LD5|A Chain A, Solution Nmr-Derived Complex Structure Of Hoxa13 Dna
Binding Domain Bound To Dna
Length = 67
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154
+KK +T Q++ELE + + +R +S L +Q+ WFQNRR + K +
Sbjct: 2 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 61
Query: 155 R 155
+
Sbjct: 62 K 62
>pdb|2L7Z|A Chain A, Nmr Structure Of A13 Homedomain
Length = 73
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154
+KK +T Q++ELE + + +R +S L +Q+ WFQNRR + K +
Sbjct: 8 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67
Query: 155 R 155
+
Sbjct: 68 K 68
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To
Dna
Length = 73
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 117 PHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHE 157
P+P E+ + EL+++ G+ Q+ WF N+R + K + + +
Sbjct: 27 PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 87
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 117 PHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHE 157
P+P E+ + EL+++ G+ Q+ WF N+R + K + + +
Sbjct: 27 PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 109 LESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ 148
L ++ P+P +++ EL+ GL + Q+ WF+NRR +
Sbjct: 509 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 548
>pdb|2CRA|A Chain A, Solution Structure Of The Homeobox Domain Of Human Homeo
Box B13
Length = 70
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
G +KK ++ Q++ELE + + +R ++S L +QI WFQNRR + K
Sbjct: 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEK 63
>pdb|1BW5|A Chain A, The Nmr Solution Structure Of The Homeodomain Of The Rat
Insulin Gene Enhancer Protein Isl-1, 50 Structures
Length = 66
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 105 QIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
Q+ L + + P PD + +L GL + I+ WFQN+R + K +
Sbjct: 14 QLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain
Bound To Dna
Length = 82
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 117 PHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHE 157
P+P E+ + EL+++ G+ Q+ WF N+R + K + + +
Sbjct: 28 PYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYKKNIGKFQ 68
>pdb|2DMT|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Barh-Like 1
Length = 80
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
T Q+ LE F++ + R +L+ LGL Q+K W+QNRR + K
Sbjct: 25 TELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWK 73
>pdb|2XSD|C Chain C, Crystal Structure Of The Dimeric Oct-6 (Pou3f1) Pou Domain
Bound To Palindromic More Dna
Length = 164
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 109 LESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
LES F +CP P + + L+ L LE + ++ WF NRR + K
Sbjct: 114 LESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEK 155
>pdb|2DMS|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Otx2
Length = 80
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
T Q+ LE+ F + +PD R E++ ++ L +++ WF+NRR + +
Sbjct: 15 TRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 63
>pdb|2VI6|A Chain A, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|B Chain B, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|C Chain C, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|D Chain D, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|E Chain E, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|F Chain F, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|G Chain G, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|H Chain H, Crystal Structure Of The Nanog Homeodomain
Length = 62
Score = 36.6 bits (83), Expect = 0.061, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 105 QIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
Q+ L+ F++ + +Q ELS L L KQ+K WFQN+R + K
Sbjct: 14 QLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 59
>pdb|2DA5|A Chain A, Solution Structure Of The Second Homeobox Domain Of Zinc
Fingers And Homeoboxes Protein 3 (Triple Homeobox 1
Protein)
Length = 75
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 97 KYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
KY P Q++ LES F + P P +++ L + ++I WF RR ++ +
Sbjct: 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65
>pdb|1X2M|A Chain A, Solution Structure Of The Homeobox Domain Of Mouse Lag1
Longevity Assurance Homolog 6
Length = 64
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 109 LESFFKE-CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
LE F HPDEK+ LS++L + + I+ WF+ RR Q K
Sbjct: 15 LEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 57
>pdb|2CQX|A Chain A, Solution Structure Of Rsgi Ruh-034, A Homeodomain From
Mouse Cdna
Length = 72
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 112 FFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
F +PDEK+ LS++L ++I+ WF++RR Q K
Sbjct: 27 FVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 65
>pdb|1AU7|A Chain A, Pit-1 MutantDNA COMPLEX
pdb|1AU7|B Chain B, Pit-1 MutantDNA COMPLEX
Length = 146
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 88 NEDGPPRKKKYHRHTPHQI---QELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQN 144
NE ++K R T I LE F E P ++ ++ L LE + ++ WF N
Sbjct: 78 NEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCN 137
Query: 145 RRTQMK 150
RR + K
Sbjct: 138 RRQREK 143
>pdb|1S7E|A Chain A, Solution Structure Of Hnf-6
Length = 147
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 63 IREEEFESRSGSDNVEGASGDDQEANED-GPPRKKKYHRHTPHQIQELESFFKECPHPDE 121
++E EF+ R + + +QE +D G KK T Q + L + FKE P +
Sbjct: 64 LQEPEFQ-RMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSK 122
Query: 122 KQRSELSRRLGLESKQIKFWFQNRR 146
+ + +S++LGLE + +F N R
Sbjct: 123 ELQITISQQLGLELSTVSNFFMNAR 147
>pdb|2D5V|A Chain A, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
pdb|2D5V|B Chain B, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
Length = 164
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 63 IREEEFESRSGSDNVEGASGDDQEANED-GPPRKKKYHRHTPHQIQELESFFKECPHPDE 121
++E EF+ R + + +QE +D G KK T Q + L + FKE P +
Sbjct: 66 LQEPEFQ-RMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSK 124
Query: 122 KQRSELSRRLGLESKQIKFWFQNRR 146
+ + +S++LGLE + +F N R
Sbjct: 125 ELQITISQQLGLELSTVSNFFMNAR 149
>pdb|1LE8|A Chain A, Crystal Structure Of The Mata1MATALPHA2-3a Heterodimer
Bound To Dna Complex
Length = 53
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+P LE F+ + K++ E++++ G+ Q++ WF N+R + K
Sbjct: 5 SPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>pdb|1HF0|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Oct-1 Bound
To Dna As A Dimer
pdb|1HF0|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Oct-1 Bound
To Dna As A Dimer
pdb|1GT0|C Chain C, Crystal Structure Of A PouHMGDNA TERNARY COMPLEX
Length = 159
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 90 DGPPRKKKYHRHTPHQIQ-ELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ 148
+G R++K I+ LE F E P ++ + ++ +L +E + I+ WF NRR +
Sbjct: 95 EGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFSNRRQK 154
Query: 149 MK 150
K
Sbjct: 155 EK 156
>pdb|2DA1|A Chain A, Solution Structure Of The First Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 70
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQN 144
K+ R T Q++ L +F P E+Q E++ + GL K IK WF+N
Sbjct: 8 KRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRN 57
>pdb|1YRN|A Chain A, Crystal Structure Of The Mata1MATALPHA2 HOMEODOMAIN
Heterodimer Bound To Dna
pdb|1F43|A Chain A, Solution Structure Of The Mata1 Homeodomain
Length = 61
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+P LE F+ + K++ E++++ G+ Q++ WF N+R + K
Sbjct: 13 SPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>pdb|1AKH|A Chain A, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 61
Score = 33.1 bits (74), Expect = 0.59, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+P LE F+ + K++ E++++ G+ Q++ WF N+R + K
Sbjct: 13 SPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>pdb|1E3O|C Chain C, Crystal Structure Of Oct-1 Pou Dimer Bound To More
Length = 160
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 90 DGPPRKKKYHRHTPHQIQ-ELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ 148
+G R++K I+ LE F E P + + ++ +L +E + I+ WF NRR +
Sbjct: 96 EGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQK 155
Query: 149 MK 150
K
Sbjct: 156 EK 157
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 102 TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
+P LE F+ + K++ E++++ G+ Q++ WF N+R + K
Sbjct: 373 SPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421
>pdb|2DA3|A Chain A, Solution Structure Of The Third Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 80
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 92 PPRKKKYHRH-TPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
P R K+ TP Q++ L + +P K ++ +GL+ + ++ WFQN R + +
Sbjct: 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARER 73
>pdb|2QTQ|A Chain A, Crystal Structure Of A Predicted Dna-Binding
Transcriptional Regulator (Saro_1072) From
Novosphingobium Aromaticivorans Dsm At 1.85 A Resolution
pdb|2QTQ|B Chain B, Crystal Structure Of A Predicted Dna-Binding
Transcriptional Regulator (Saro_1072) From
Novosphingobium Aromaticivorans Dsm At 1.85 A Resolution
pdb|2QTQ|C Chain C, Crystal Structure Of A Predicted Dna-Binding
Transcriptional Regulator (Saro_1072) From
Novosphingobium Aromaticivorans Dsm At 1.85 A Resolution
pdb|2QTQ|D Chain D, Crystal Structure Of A Predicted Dna-Binding
Transcriptional Regulator (Saro_1072) From
Novosphingobium Aromaticivorans Dsm At 1.85 A Resolution
pdb|2RHA|A Chain A, Crystal Structure Of A Predicted Dna-Binding
Transcriptional Regulator (Saro_1072) From
Novosphingobium Aromaticivorans Dsm At 2.10 A Resolution
Length = 213
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 125 SELSRRLGLESKQIKFWFQNRRTQMKTQMER-HENIILRQEHDKLRAENEMLKDA 178
SELS R GL S +K++F N+ +K ++R ENI+ + D L A+++ +A
Sbjct: 40 SELSLRSGLNSALVKYYFGNKAGLLKALLDRDXENIV--KSVDALLAKDDXSPEA 92
>pdb|1OCT|C Chain C, Crystal Structure Of The Oct-1 Pou Domain Bound To An
Octamer Site: Dna Recognition With Tethered Dna-Binding
Modules
Length = 156
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 90 DGPPRKKKYHRHTPHQIQ-ELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ 148
+G R++K I+ LE F E P ++ + ++ +L +E + I+ WF NRR +
Sbjct: 91 EGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQK 150
Query: 149 MK 150
K
Sbjct: 151 EK 152
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
pdb|3K2A|B Chain B, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
Length = 67
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 117 PHPDEKQRSELSRRLGLESKQIKFWFQNRRTQM 149
P+P E+Q+ +L++ GL Q+ WF N R ++
Sbjct: 24 PYPSEEQKKQLAQDTGLTILQVNNWFINARRRI 56
>pdb|3U5S|A Chain A, Selenium Substituted Human Augmenter Of Liver Regeneration
Length = 126
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 84 DQEANEDGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQ 123
D + ED PP +++ RH+ + L +++ + P P+++Q
Sbjct: 9 DTKFREDXPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQ 48
>pdb|3NAU|A Chain A, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
pdb|3NAU|B Chain B, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
Length = 66
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRR 146
+ T QI L++ F + PD+ + L GL +IK WF + R
Sbjct: 10 KKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHR 56
>pdb|1CQT|A Chain A, Crystal Structure Of A Ternary Complex Containing An Oca-B
Peptide, The Oct-1 Pou Domain, And An Octamer Element
pdb|1CQT|B Chain B, Crystal Structure Of A Ternary Complex Containing An Oca-B
Peptide, The Oct-1 Pou Domain, And An Octamer Element
Length = 163
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 90 DGPPRKKKYHRHTPHQIQ-ELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ 148
+G R++K I+ LE F E P ++ + ++ +L +E + I+ WF NRR +
Sbjct: 98 EGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQK 157
Query: 149 MK 150
K
Sbjct: 158 EK 159
>pdb|2CUF|A Chain A, Solution Structure Of The Homeobox Domain Of The Human
Hypothetical Protein Flj21616
Length = 95
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 15/57 (26%)
Query: 109 LESFFKECPHPDEKQRSELS-----------RRLG----LESKQIKFWFQNRRTQMK 150
+ES+F E +PDE +R E++ ++L + S ++ WF NRR ++K
Sbjct: 22 MESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIK 78
>pdb|3O55|A Chain A, Crystal Structure Of Human Fad-Linked Augmenter Of Liver
Regeneration (Alr)
Length = 125
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 84 DQEANEDGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQ 123
D + ED PP +++ RH+ + L +++ + P P+++Q
Sbjct: 8 DTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQ 47
>pdb|3TK0|A Chain A, Mutation Of Sfalr
Length = 126
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 84 DQEANEDGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQ 123
D + ED PP +++ RH+ + L +++ + P P+++Q
Sbjct: 9 DTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQ 48
>pdb|1POG|A Chain A, Solution Structure Of The Oct-1 Pou-Homeo Domain
Determined By Nmr And Restrained Molecular Dynamics
Length = 67
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
RKK+ T ++ LE F E P ++ + ++ +L +E + I+ WF NRR + K
Sbjct: 8 RKKRTSIETNIRVA-LEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEK 63
>pdb|3MBG|A Chain A, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|B Chain B, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|C Chain C, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
Length = 139
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 84 DQEANEDGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQ 123
D + ED PP +++ RH+ + L +++ + P P+++Q
Sbjct: 22 DTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQ 61
>pdb|2ECC|A Chain A, Solution Structure Of The Second Homeobox Domain Of Human
Homeodomain Leucine Zipper-Encoding Gene (Homez)
Length = 76
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150
R T Q+ L+SFF +C + +L + GL +I WF + R +K
Sbjct: 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALK 59
>pdb|2NZZ|A Chain A, Nmr Structure Analysis Of The Penetratin Conjugated Gas
(374-394) Peptide
pdb|2O00|A Chain A, Nmr Structure Analysis Of The Penetratin Conjugated Gas
(374-394) Peptide
Length = 37
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 136 KQIKFWFQNRRTQMKTQMERHENIILRQEH 165
+QIK WFQNRR + K ++ I+++ H
Sbjct: 1 RQIKIWFQNRRMKWKKRVFNDARDIIQRMH 30
>pdb|3NAR|A Chain A, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
pdb|3NAR|B Chain B, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
Length = 96
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 91 GPPRKK----KYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRR 146
GP K K + TP Q+ L+S F P ++ +L++ GL I WF + R
Sbjct: 18 GPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTR 77
Query: 147 TQMK 150
K
Sbjct: 78 YAWK 81
>pdb|2DN0|A Chain A, Solution Structure Of The Second Homeobox Domain Of Human
Zinc Fingers And Homeoboxes Protein 3
Length = 76
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRR 146
+ KK H Q+ L+ F P + + L++ GL +++++ WF +RR
Sbjct: 12 KNKKSHE----QLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRR 60
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 672 DSSGSLVVY----APVDVPSMSMVMNGGDSTCV-ALLPSGFAILPDGYFGHGGLI 721
D+SG+ V A + VP+ V GD TC+ + PS IL D + H L+
Sbjct: 261 DTSGTTVFNFGNGAKITVPNTEYVYQNGDGTCLWGIQPSDDTILGDNFLRHAYLL 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,296,885
Number of Sequences: 62578
Number of extensions: 980243
Number of successful extensions: 2475
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2381
Number of HSP's gapped (non-prelim): 103
length of query: 784
length of database: 14,973,337
effective HSP length: 107
effective length of query: 677
effective length of database: 8,277,491
effective search space: 5603861407
effective search space used: 5603861407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)