Query 003954
Match_columns 784
No_of_seqs 382 out of 1827
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 14:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 1.1E-88 2.3E-93 697.7 21.6 229 286-515 1-229 (229)
2 PF01852 START: START domain; 99.7 2.8E-17 6E-22 166.1 12.9 204 291-515 1-205 (206)
3 smart00234 START in StAR and p 99.7 4.3E-16 9.3E-21 157.8 18.3 204 292-516 2-206 (206)
4 KOG0842 Transcription factor t 99.7 1.2E-16 2.5E-21 170.7 10.8 68 90-157 149-216 (307)
5 KOG0483 Transcription factor H 99.7 5.9E-17 1.3E-21 164.3 5.6 82 95-176 51-132 (198)
6 KOG0484 Transcription factor P 99.6 3.5E-17 7.6E-22 147.3 1.1 66 90-155 13-78 (125)
7 KOG0488 Transcription factor B 99.6 6.5E-16 1.4E-20 167.1 8.5 66 90-155 168-233 (309)
8 KOG0487 Transcription factor A 99.6 1.4E-15 3E-20 162.6 8.6 65 91-155 232-296 (308)
9 KOG0485 Transcription factor N 99.6 2.2E-15 4.7E-20 151.5 9.0 65 91-155 101-165 (268)
10 KOG0489 Transcription factor z 99.6 2.4E-16 5.1E-21 167.3 1.6 65 92-156 157-221 (261)
11 KOG0494 Transcription factor C 99.6 9.2E-16 2E-20 157.4 5.6 75 92-166 138-213 (332)
12 KOG0848 Transcription factor C 99.6 3.2E-15 7E-20 154.2 7.5 67 90-156 195-261 (317)
13 KOG0843 Transcription factor E 99.6 1.8E-15 3.9E-20 148.7 4.2 64 93-156 101-164 (197)
14 KOG2251 Homeobox transcription 99.5 5.9E-15 1.3E-19 149.5 4.7 67 90-156 33-99 (228)
15 KOG0850 Transcription factor D 99.5 1.2E-14 2.5E-19 147.9 6.9 68 88-155 116-183 (245)
16 KOG0492 Transcription factor M 99.5 3.8E-14 8.3E-19 141.8 5.9 65 91-155 141-205 (246)
17 KOG0493 Transcription factor E 99.5 1.1E-13 2.3E-18 142.5 8.2 59 95-153 247-305 (342)
18 PF00046 Homeobox: Homeobox do 99.4 3.3E-14 7.1E-19 116.4 2.6 57 95-151 1-57 (57)
19 KOG0844 Transcription factor E 99.4 3E-13 6.6E-18 141.6 3.9 62 93-154 180-241 (408)
20 TIGR01565 homeo_ZF_HD homeobox 99.4 8.7E-13 1.9E-17 109.2 5.7 53 94-146 1-57 (58)
21 KOG0486 Transcription factor P 99.3 8E-13 1.7E-17 139.6 5.5 63 92-154 110-172 (351)
22 cd00177 START Lipid-binding ST 99.3 8.1E-11 1.8E-15 116.4 15.1 186 295-512 2-190 (193)
23 smart00389 HOX Homeodomain. DN 99.3 1.9E-12 4.1E-17 105.1 2.7 56 95-150 1-56 (56)
24 KOG4577 Transcription factor L 99.3 4.5E-12 9.7E-17 132.1 5.7 76 93-168 166-241 (383)
25 cd00086 homeodomain Homeodomai 99.3 2.6E-12 5.6E-17 105.1 3.0 56 96-151 2-57 (59)
26 COG5576 Homeodomain-containing 99.3 3.8E-12 8.2E-17 125.3 4.6 66 93-158 50-115 (156)
27 KOG0491 Transcription factor B 99.2 1E-12 2.3E-17 127.5 -1.1 66 92-157 98-163 (194)
28 KOG3802 Transcription factor O 99.2 2.5E-11 5.5E-16 132.6 5.4 63 91-153 291-353 (398)
29 KOG0847 Transcription factor, 99.1 1.9E-11 4E-16 123.4 2.1 64 91-154 164-227 (288)
30 cd08871 START_STARD10-like Lip 99.1 3.7E-09 8E-14 109.5 18.5 201 294-527 9-213 (222)
31 cd08867 START_STARD4_5_6-like 99.1 5.2E-09 1.1E-13 107.2 17.1 194 289-514 3-205 (206)
32 KOG0490 Transcription factor, 99.0 1.6E-10 3.6E-15 119.1 4.1 64 91-154 57-120 (235)
33 cd08868 START_STARD1_3_like Ch 99.0 7.6E-09 1.7E-13 106.2 16.3 194 289-517 6-208 (208)
34 cd08904 START_STARD6-like Lipi 98.9 2.9E-08 6.2E-13 102.3 14.2 173 289-485 3-178 (204)
35 KOG0849 Transcription factor P 98.8 1.4E-09 3.1E-14 120.3 3.7 64 90-153 172-235 (354)
36 cd08903 START_STARD5-like Lipi 98.7 3.2E-07 7E-12 94.6 16.2 193 289-514 3-205 (208)
37 cd08909 START_STARD13-like C-t 98.7 4.4E-07 9.6E-12 93.6 15.0 129 341-485 48-178 (205)
38 cd08869 START_RhoGAP C-termina 98.6 6.1E-07 1.3E-11 91.8 15.2 162 294-483 4-168 (197)
39 PLN00188 enhanced disease resi 98.6 3.5E-07 7.6E-12 107.4 14.4 133 345-487 227-365 (719)
40 KOG1168 Transcription factor A 98.6 5.1E-08 1.1E-12 102.3 4.4 62 91-152 306-367 (385)
41 cd08905 START_STARD1-like Chol 98.5 1.3E-06 2.9E-11 90.2 13.9 192 289-515 6-207 (209)
42 cd08902 START_STARD4-like Lipi 98.4 4.6E-06 9.9E-11 85.5 13.6 192 289-513 3-200 (202)
43 cd08906 START_STARD3-like Chol 98.3 1.1E-05 2.3E-10 83.6 15.5 195 288-514 5-206 (209)
44 KOG0775 Transcription factor S 98.2 8E-07 1.7E-11 93.3 3.6 51 101-151 183-233 (304)
45 cd08908 START_STARD12-like C-t 98.1 4.1E-05 8.9E-10 79.1 13.9 162 293-483 11-175 (204)
46 cd08877 START_2 Uncharacterize 98.0 8.1E-05 1.8E-09 76.9 14.4 200 289-515 3-213 (215)
47 cd08910 START_STARD2-like Lipi 98.0 8.1E-05 1.8E-09 76.9 13.1 151 345-516 49-206 (207)
48 cd08876 START_1 Uncharacterize 97.9 0.00016 3.5E-09 72.9 13.1 153 345-514 41-194 (195)
49 cd08874 START_STARD9-like C-te 97.9 0.00014 3.1E-09 75.2 12.2 118 350-483 50-176 (205)
50 cd08907 START_STARD8-like C-te 97.8 0.00011 2.4E-09 75.6 10.4 166 293-486 11-179 (205)
51 cd08870 START_STARD2_7-like Li 97.8 0.0005 1.1E-08 71.0 15.1 193 297-516 8-208 (209)
52 KOG0774 Transcription factor P 97.8 1.2E-05 2.6E-10 83.9 3.1 58 95-152 189-249 (334)
53 KOG0490 Transcription factor, 97.6 4.9E-05 1.1E-09 78.5 4.2 65 90-154 149-213 (235)
54 cd08872 START_STARD11-like Cer 97.5 0.0019 4.2E-08 68.2 15.2 194 294-514 9-224 (235)
55 PF05920 Homeobox_KN: Homeobox 97.5 2.1E-05 4.5E-10 60.8 -0.6 34 115-148 7-40 (40)
56 cd08911 START_STARD7-like Lipi 97.4 0.0017 3.7E-08 67.0 13.0 152 346-516 46-206 (207)
57 cd08871 START_STARD10-like Lip 97.4 0.011 2.5E-07 61.4 18.9 176 560-783 21-202 (222)
58 cd08873 START_STARD14_15-like 97.4 0.0017 3.6E-08 68.7 12.1 119 350-481 82-203 (235)
59 KOG2252 CCAAT displacement pro 97.3 0.00017 3.8E-09 82.5 3.4 58 92-149 418-475 (558)
60 cd08907 START_STARD8-like C-te 96.9 0.097 2.1E-06 54.3 18.6 175 559-783 24-204 (205)
61 KOG1146 Homeobox protein [Gene 96.9 0.0012 2.7E-08 81.9 5.7 62 93-154 902-963 (1406)
62 cd08913 START_STARD14-like Lip 96.8 0.016 3.6E-07 61.5 12.7 121 348-481 84-208 (240)
63 cd08914 START_STARD15-like Lip 96.7 0.013 2.9E-07 62.0 11.3 129 346-490 79-211 (236)
64 cd08869 START_RhoGAP C-termina 96.6 0.2 4.3E-06 51.5 18.5 173 560-782 17-195 (197)
65 cd08904 START_STARD6-like Lipi 96.5 0.17 3.8E-06 52.5 17.5 174 561-781 21-203 (204)
66 cd08874 START_STARD9-like C-te 96.3 0.056 1.2E-06 56.2 12.6 133 559-712 19-157 (205)
67 cd08876 START_1 Uncharacterize 95.8 0.73 1.6E-05 46.4 18.1 60 559-627 14-73 (195)
68 cd08868 START_STARD1_3_like Ch 95.6 0.86 1.9E-05 46.9 17.9 131 561-712 23-160 (208)
69 cd00177 START Lipid-binding ST 95.5 1.1 2.3E-05 44.3 17.5 147 562-751 15-165 (193)
70 smart00234 START in StAR and p 95.3 1 2.2E-05 45.7 17.2 134 561-712 18-157 (206)
71 cd08906 START_STARD3-like Chol 95.2 2 4.4E-05 44.7 19.0 130 561-711 24-160 (209)
72 cd08877 START_2 Uncharacterize 95.1 1.1 2.4E-05 46.4 16.9 117 548-681 10-129 (215)
73 cd08903 START_STARD5-like Lipi 95.1 1.3 2.9E-05 45.8 17.3 179 560-783 20-207 (208)
74 cd08908 START_STARD12-like C-t 94.9 1.4 3E-05 46.0 16.9 173 563-783 28-203 (204)
75 cd08867 START_STARD4_5_6-like 94.9 3.7 8.1E-05 42.2 19.9 145 542-712 8-160 (206)
76 KOG0773 Transcription factor M 94.6 0.045 9.7E-07 60.7 5.3 59 93-151 238-299 (342)
77 cd08911 START_STARD7-like Lipi 93.9 3.1 6.8E-05 43.0 16.9 107 560-680 19-128 (207)
78 PF01852 START: START domain; 93.4 3.1 6.6E-05 42.1 15.6 193 544-783 2-202 (206)
79 cd08873 START_STARD14_15-like 93.2 1 2.3E-05 47.9 12.1 66 560-638 53-118 (235)
80 cd08870 START_STARD2_7-like Li 93.1 1.1 2.4E-05 46.3 11.9 106 562-681 22-133 (209)
81 PF11569 Homez: Homeodomain le 93.1 0.022 4.8E-07 47.3 -0.5 41 106-146 10-50 (56)
82 cd08909 START_STARD13-like C-t 92.7 7.4 0.00016 40.7 17.2 174 562-783 27-204 (205)
83 cd08910 START_STARD2-like Lipi 92.6 4.9 0.00011 41.7 15.8 93 559-668 22-116 (207)
84 cd08875 START_ArGLABRA2_like C 91.8 6.6 0.00014 41.7 15.8 187 540-758 3-204 (229)
85 cd08914 START_STARD15-like Lip 91.8 1.6 3.4E-05 46.6 11.2 58 559-627 53-110 (236)
86 PRK09413 IS2 repressor TnpA; R 90.4 0.66 1.4E-05 44.1 6.2 41 98-143 10-51 (121)
87 cd08902 START_STARD4-like Lipi 89.4 20 0.00043 37.6 16.4 60 560-628 21-80 (202)
88 cd08913 START_STARD14-like Lip 88.3 4.9 0.00011 43.0 11.5 58 559-627 56-113 (240)
89 cd08864 SRPBCC_DUF3074 DUF3074 87.6 4.3 9.3E-05 42.4 10.4 86 398-485 89-179 (208)
90 KOG2761 START domain-containin 86.6 5.2 0.00011 42.1 10.2 112 354-479 63-183 (219)
91 KOG4005 Transcription factor X 85.5 4.4 9.6E-05 42.9 9.0 60 143-217 82-143 (292)
92 cd08860 TcmN_ARO-CYC_like N-te 85.3 14 0.00029 36.2 12.0 140 349-516 5-144 (146)
93 cd08905 START_STARD1-like Chol 83.8 58 0.0013 33.8 17.8 112 540-668 5-120 (209)
94 cd08866 SRPBCC_11 Ligand-bindi 83.4 16 0.00034 34.5 11.3 36 348-387 2-37 (144)
95 PF04218 CENP-B_N: CENP-B N-te 82.7 0.89 1.9E-05 37.2 2.1 46 95-145 1-46 (53)
96 cd08872 START_STARD11-like Cer 82.5 30 0.00066 36.8 14.0 100 555-668 19-121 (235)
97 KOG3623 Homeobox transcription 81.8 0.7 1.5E-05 55.3 1.6 47 106-152 568-614 (1007)
98 cd05018 CoxG Carbon monoxide d 81.5 22 0.00047 33.1 11.4 119 350-495 6-124 (144)
99 KOG4196 bZIP transcription fac 81.2 9.5 0.00021 37.0 8.6 87 99-220 22-109 (135)
100 cd08861 OtcD1_ARO-CYC_like N-t 81.1 9.6 0.00021 35.8 8.9 27 350-376 4-30 (142)
101 cd07813 COQ10p_like Coenzyme Q 80.0 11 0.00025 35.4 9.0 135 349-516 3-137 (138)
102 PF02183 HALZ: Homeobox associ 75.8 5.2 0.00011 32.0 4.4 24 153-176 2-25 (45)
103 cd07819 SRPBCC_2 Ligand-bindin 74.8 41 0.00088 31.1 11.0 107 349-484 6-114 (140)
104 cd07817 SRPBCC_8 Ligand-bindin 72.5 72 0.0016 29.4 12.1 133 350-514 5-137 (139)
105 TIGR00219 mreC rod shape-deter 69.9 5.9 0.00013 43.3 4.7 41 158-216 68-108 (283)
106 PRK10724 hypothetical protein; 69.7 59 0.0013 32.4 11.3 137 348-517 18-154 (158)
107 PF06005 DUF904: Protein of un 67.1 11 0.00025 33.0 4.9 43 154-218 16-58 (72)
108 PF10604 Polyketide_cyc2: Poly 66.7 1E+02 0.0023 28.1 11.9 34 350-387 7-40 (139)
109 cd07821 PYR_PYL_RCAR_like Pyra 64.1 66 0.0014 29.4 9.9 33 351-387 7-39 (140)
110 PRK13922 rod shape-determining 64.0 10 0.00022 40.9 5.0 41 157-216 70-110 (276)
111 PF01527 HTH_Tnp_1: Transposas 63.3 0.87 1.9E-05 38.9 -2.7 43 96-142 2-44 (76)
112 cd08865 SRPBCC_10 Ligand-bindi 63.3 52 0.0011 30.1 9.0 37 350-391 4-40 (140)
113 PF12711 Kinesin-relat_1: Kine 62.1 14 0.0003 33.6 4.6 47 160-222 21-67 (86)
114 cd07818 SRPBCC_1 Ligand-bindin 60.5 57 0.0012 30.9 9.0 29 349-377 6-34 (150)
115 KOG0709 CREB/ATF family transc 58.7 91 0.002 36.4 11.4 98 98-224 218-318 (472)
116 cd07822 SRPBCC_4 Ligand-bindin 55.4 83 0.0018 28.8 9.0 51 462-515 91-141 (141)
117 PLN00188 enhanced disease resi 53.8 70 0.0015 39.4 9.9 158 559-751 195-361 (719)
118 PF04880 NUDE_C: NUDE protein, 52.6 13 0.00028 37.8 3.1 19 200-218 25-43 (166)
119 KOG0971 Microtubule-associated 51.1 39 0.00085 42.2 7.2 54 161-221 337-390 (1243)
120 KOG1146 Homeobox protein [Gene 50.0 9.1 0.0002 49.2 1.9 62 93-154 443-504 (1406)
121 PF07407 Seadorna_VP6: Seadorn 48.5 20 0.00044 39.8 4.0 22 156-177 32-53 (420)
122 PRK15422 septal ring assembly 47.3 39 0.00085 30.3 4.9 59 151-224 13-75 (79)
123 KOG2761 START domain-containin 46.5 28 0.0006 36.8 4.6 182 558-783 25-214 (219)
124 KOG4343 bZIP transcription fac 45.5 42 0.00091 39.6 6.1 21 199-219 316-336 (655)
125 PRK14872 rod shape-determining 45.3 25 0.00055 39.5 4.3 42 156-216 57-98 (337)
126 TIGR03752 conj_TIGR03752 integ 43.0 24 0.00053 41.2 3.8 26 154-179 78-103 (472)
127 COG1792 MreC Cell shape-determ 42.9 50 0.0011 36.2 6.1 43 154-215 64-106 (284)
128 PF02183 HALZ: Homeobox associ 42.7 52 0.0011 26.3 4.5 39 161-221 3-41 (45)
129 PF04967 HTH_10: HTH DNA bindi 39.4 34 0.00073 28.3 3.1 37 101-137 1-39 (53)
130 smart00338 BRLZ basic region l 38.9 1.1E+02 0.0023 25.8 6.3 40 154-215 24-63 (65)
131 cd07823 SRPBCC_5 Ligand-bindin 37.7 17 0.00037 34.8 1.3 26 599-624 3-28 (146)
132 KOG4403 Cell surface glycoprot 37.0 66 0.0014 37.2 5.8 22 293-314 402-423 (575)
133 smart00340 HALZ homeobox assoc 36.7 29 0.00064 27.5 2.2 20 202-221 15-34 (44)
134 cd07824 SRPBCC_6 Ligand-bindin 35.7 2.3E+02 0.005 26.9 8.9 136 352-514 8-146 (146)
135 cd07819 SRPBCC_2 Ligand-bindin 34.7 31 0.00068 31.9 2.6 30 596-625 3-32 (140)
136 cd07812 SRPBCC START/RHO_alpha 34.6 2.1E+02 0.0045 25.0 7.9 29 350-378 4-32 (141)
137 PRK03975 tfx putative transcri 34.5 33 0.00071 34.0 2.7 46 99-150 5-50 (141)
138 PF15058 Speriolin_N: Sperioli 34.3 52 0.0011 34.2 4.2 40 158-220 7-46 (200)
139 PF04545 Sigma70_r4: Sigma-70, 34.0 20 0.00044 28.3 1.0 38 100-142 4-41 (50)
140 cd08865 SRPBCC_10 Ligand-bindi 34.0 27 0.00058 32.0 2.0 28 598-625 2-29 (140)
141 PF10604 Polyketide_cyc2: Poly 33.8 41 0.0009 30.8 3.3 29 597-625 4-32 (139)
142 COG4026 Uncharacterized protei 33.0 94 0.002 33.1 5.8 45 153-219 146-190 (290)
143 cd07821 PYR_PYL_RCAR_like Pyra 31.2 38 0.00083 31.0 2.6 27 598-624 4-30 (140)
144 cd05018 CoxG Carbon monoxide d 30.2 30 0.00066 32.1 1.7 28 598-625 4-31 (144)
145 cd06171 Sigma70_r4 Sigma70, re 30.2 16 0.00034 27.8 -0.2 41 100-145 10-50 (55)
146 cd07817 SRPBCC_8 Ligand-bindin 30.1 39 0.00086 31.2 2.5 28 598-625 3-30 (139)
147 cd08866 SRPBCC_11 Ligand-bindi 30.0 35 0.00077 32.0 2.1 28 598-625 2-29 (144)
148 cd08901 SRPBCC_CalC_Aha1-like_ 29.9 34 0.00074 32.5 2.0 27 597-623 2-28 (136)
149 PF14389 Lzipper-MIP1: Leucine 29.3 3.3E+02 0.0071 24.7 8.1 70 147-220 6-75 (88)
150 PRK06266 transcription initiat 29.1 46 0.00099 34.1 2.8 35 181-216 136-170 (178)
151 COG3074 Uncharacterized protei 29.0 1.2E+02 0.0025 26.8 4.7 53 157-224 19-75 (79)
152 cd08862 SRPBCC_Smu440-like Lig 28.9 43 0.00093 30.9 2.5 30 596-625 2-31 (138)
153 PF00170 bZIP_1: bZIP transcri 28.6 2.2E+02 0.0048 23.8 6.5 24 154-177 24-47 (64)
154 KOG4571 Activating transcripti 28.6 1.1E+02 0.0024 33.8 5.7 29 151-179 243-271 (294)
155 TIGR00219 mreC rod shape-deter 28.4 1.5E+02 0.0033 32.5 6.9 44 161-223 64-108 (283)
156 cd07818 SRPBCC_1 Ligand-bindin 28.1 1.1E+02 0.0023 29.0 5.1 32 597-628 4-35 (150)
157 cd07823 SRPBCC_5 Ligand-bindin 27.5 5.4E+02 0.012 24.4 10.7 30 349-378 3-32 (146)
158 cd07825 SRPBCC_7 Ligand-bindin 27.3 47 0.001 31.2 2.4 26 599-624 4-29 (144)
159 cd07814 SRPBCC_CalC_Aha1-like 26.7 40 0.00087 31.1 1.9 28 598-625 3-30 (139)
160 cd07812 SRPBCC START/RHO_alpha 26.5 47 0.001 29.3 2.2 27 599-625 3-29 (141)
161 PF06156 DUF972: Protein of un 26.1 89 0.0019 29.5 4.0 21 200-220 37-57 (107)
162 cd07814 SRPBCC_CalC_Aha1-like 25.2 5.2E+02 0.011 23.5 9.7 47 463-515 92-138 (139)
163 TIGR03752 conj_TIGR03752 integ 25.0 1.4E+02 0.0031 35.0 6.2 29 153-181 70-98 (472)
164 PF09726 Macoilin: Transmembra 24.9 3.3E+02 0.0072 33.8 9.6 18 161-178 458-475 (697)
165 PF14197 Cep57_CLD_2: Centroso 24.8 1.5E+02 0.0033 25.8 4.9 20 199-218 47-66 (69)
166 PF15392 Joubert: Joubert synd 24.3 3.8E+02 0.0083 30.0 8.8 38 172-211 78-116 (329)
167 KOG3119 Basic region leucine z 22.4 1.1E+02 0.0025 33.2 4.5 67 144-225 189-255 (269)
168 cd07822 SRPBCC_4 Ligand-bindin 22.2 72 0.0016 29.2 2.6 26 599-624 4-29 (141)
169 COG3413 Predicted DNA binding 22.0 78 0.0017 32.9 3.1 37 100-136 155-193 (215)
170 PRK13169 DNA replication intia 22.0 1.3E+02 0.0029 28.6 4.3 19 200-218 37-55 (110)
171 KOG3755 SATB1 matrix attachmen 22.0 18 0.0004 43.0 -1.7 57 97-153 694-758 (769)
172 cd00569 HTH_Hin_like Helix-tur 21.9 77 0.0017 21.3 2.2 37 100-141 5-41 (42)
173 PRK00118 putative DNA-binding 21.8 1.5E+02 0.0033 27.9 4.6 47 100-151 17-63 (104)
174 PF05494 Tol_Tol_Ttg2: Toluene 20.8 2.5E+02 0.0053 28.0 6.3 55 383-443 86-140 (170)
175 cd01106 HTH_TipAL-Mta Helix-Tu 20.6 2.5E+02 0.0053 25.7 5.8 37 97-146 35-71 (103)
176 PRK00888 ftsB cell division pr 20.6 1.4E+02 0.003 28.0 4.1 36 141-179 20-57 (105)
177 COG5481 Uncharacterized conser 20.4 98 0.0021 26.4 2.7 52 160-220 8-59 (67)
178 PF07151 DUF1391: Protein of u 20.1 48 0.001 26.4 0.8 8 501-508 38-45 (49)
179 PF06785 UPF0242: Uncharacteri 20.1 85 0.0018 35.2 2.9 74 141-227 54-127 (401)
180 cd07820 SRPBCC_3 Ligand-bindin 20.0 69 0.0015 30.2 2.1 26 599-624 3-28 (137)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=1.1e-88 Score=697.69 Aligned_cols=229 Identities=53% Similarity=0.902 Sum_probs=221.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceEecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhc
Q 003954 286 RNMLIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMM 365 (784)
Q Consensus 286 ~~~~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~lm 365 (784)
|++|++||++||+||++||++++|||+++.++++|+||+|||.+.||+..|.++.||++|||||||+|.||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 56899999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred ChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeecCCeEEEEEEeccCCCC
Q 003954 366 DANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNRE 445 (784)
Q Consensus 366 D~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~ 445 (784)
|+++|.++||+||++|+|++|| ++|.+|++||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vi-stg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVI-STGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEe-eCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999998864
Q ss_pred CCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHH
Q 003954 446 GLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (784)
Q Consensus 446 ~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 515 (784)
.+..++++||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 4444578999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.72 E-value=2.8e-17 Score=166.06 Aligned_cols=204 Identities=20% Similarity=0.323 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHhhcCCCCceEecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcChh-h
Q 003954 291 DLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDAN-R 369 (784)
Q Consensus 291 ~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~lmD~~-~ 369 (784)
++|+++|.+++++++.++.-|....+. -+.+.|.+..+.. .++.+..-|..++|...+.++++.|+|.. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~ 71 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDK----KNGDVYYKKVSPS-----DSCPIKMFKAEGVVPASPEQVVEDLLDDREQ 71 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEE----TTTCEEEEEEECS-----SSTSCEEEEEEEEESSCHHHHHHHHHCGGGH
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEcc----CCCeEEEEEeCcc-----ccccceEEEEEEEEcCChHHHHHHHHhhHhh
Confidence 589999999999999999999887521 1122233322221 12466788999999999999999999988 8
Q ss_pred HhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeecCCeEEEEEEeccCCCCCCCC
Q 003954 370 WAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSA 449 (784)
Q Consensus 370 W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~~~~~ 449 (784)
|-.++ ..++.++.+ + .+..|..++.++..++|+.| |||.++|++++.++|.++|+..|++.....+..
T Consensus 72 Wd~~~----~~~~~le~~-~------~~~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~ 139 (206)
T PF01852_consen 72 WDKMC----VEAEVLEQI-D------EDTDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNS 139 (206)
T ss_dssp HSTTE----EEEEEEEEE-E------TTEEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-
T ss_pred cccch----hhheeeeec-C------CCCeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccccc
Confidence 88883 367777777 3 23678888889999999999 999999999999999999999999866543313
Q ss_pred CCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHH
Q 003954 450 DPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (784)
Q Consensus 450 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 515 (784)
..++|+..++||++|++.++|.|+||+|-|++..-+...-+++.++.+...--.+.+.+.|++|++
T Consensus 140 ~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 140 KGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred cCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999999999999999998889999999988765
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.70 E-value=4.3e-16 Score=157.80 Aligned_cols=204 Identities=33% Similarity=0.537 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHhhcCCCCceEecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHH-HHhcChhhH
Q 003954 292 LALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALI-ETMMDANRW 370 (784)
Q Consensus 292 lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LV-e~lmD~~~W 370 (784)
-|+.++.|+++++...+..|...++.. |...|.+.+ .+.+..+.+-|..++|...+.+++ ++|+|. .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~~~~~------~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~-~~ 70 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENE----NGDEVRSIL------SPGRSPGEASRAVGVVPMVCADLVEELMDDL-RY 70 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccC----CcceEEEEc------cCCCCceEEEEEEEEEecChHHHHHHHHhcc-cc
Confidence 377899999999999999999976421 111121111 111345789999999999999844 566665 33
Q ss_pred hhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeecCCeEEEEEEeccCCCCCCCCC
Q 003954 371 AEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSAD 450 (784)
Q Consensus 371 ~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~~~~~~ 450 (784)
...+-..+..++.++.+ +. +..+......+.. +| +..|||.++|++++.++|.|+|+..|++.... +...
T Consensus 71 r~~Wd~~~~~~~~ie~~-~~------~~~i~~~~~~~~~-~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-p~~~ 140 (206)
T smart00234 71 RPEWDKNVAKAETLEVI-DN------GTVIYHYVSKFVA-GP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-PPTS 140 (206)
T ss_pred hhhCchhcccEEEEEEE-CC------CCeEEEEEEeccc-Cc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-CCCC
Confidence 33344445568888888 42 2233333333333 35 55699999999999999999999999986432 2224
Q ss_pred CccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHHH
Q 003954 451 PFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCEC 516 (784)
Q Consensus 451 ~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~cer 516 (784)
.++|+..++||++|+++++|.|+|||+.|++..-+..+-+.+.++.++....+++|.+.|+++|++
T Consensus 141 ~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 141 GYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999998889999999999999999999999999973
No 4
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.68 E-value=1.2e-16 Score=170.72 Aligned_cols=68 Identities=29% Similarity=0.442 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhhh
Q 003954 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHE 157 (784)
Q Consensus 90 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e 157 (784)
..++|||+|..||..|+.+||+.|+.++|++..+|++||..|+|+++||||||||||.|.||+++.++
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 46678888999999999999999999999999999999999999999999999999999999876643
No 5
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.66 E-value=5.9e-17 Score=164.28 Aligned_cols=82 Identities=33% Similarity=0.558 Sum_probs=76.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhhhhHHHHHhhHHHHHhHHH
Q 003954 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHENIILRQEHDKLRAENEM 174 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~~~l~~en~~ 174 (784)
++++.|||.+|+..||+.|+...++...++..||++|||.+|||+|||||||||||.++.+.++..|+.+++.++.+|..
T Consensus 51 ~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~ 130 (198)
T KOG0483|consen 51 KGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDR 130 (198)
T ss_pred ccccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhH
Confidence 33445799999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred HH
Q 003954 175 LK 176 (784)
Q Consensus 175 l~ 176 (784)
|+
T Consensus 131 Lq 132 (198)
T KOG0483|consen 131 LQ 132 (198)
T ss_pred HH
Confidence 66
No 6
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.64 E-value=3.5e-17 Score=147.31 Aligned_cols=66 Identities=29% Similarity=0.538 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 90 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
.++|.||.|+.||..|+.+||+.|.+.+||++..|++||.++.|++.+|||||||||+|.||+++-
T Consensus 13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~ 78 (125)
T KOG0484|consen 13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERA 78 (125)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999986543
No 7
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.62 E-value=6.5e-16 Score=167.12 Aligned_cols=66 Identities=38% Similarity=0.514 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 90 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
.++|+||.||.||..|+.+||+.|++.+|.+..+|.+||++|||+..|||+||||||+||||+..+
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 347888899999999999999999999999999999999999999999999999999999987655
No 8
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.60 E-value=1.4e-15 Score=162.62 Aligned_cols=65 Identities=38% Similarity=0.446 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
.+..||||.-+|+.|+.+||++|-.|.|.+...|.||++.|+|++|||||||||||.|+||..++
T Consensus 232 ~~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re 296 (308)
T KOG0487|consen 232 ARRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRE 296 (308)
T ss_pred ccccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhh
Confidence 35668888899999999999999999999999999999999999999999999999999987754
No 9
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.60 E-value=2.2e-15 Score=151.45 Aligned_cols=65 Identities=32% Similarity=0.434 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
+.+|||.||.|+..|+..||..|+..+|++..+|.-||++|.|+|.||||||||||.||||+..-
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aa 165 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAA 165 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 45778899999999999999999999999999999999999999999999999999999987543
No 10
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.59 E-value=2.4e-16 Score=167.30 Aligned_cols=65 Identities=32% Similarity=0.444 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhh
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (784)
.+.||.||.||..|+.+||+.|+.++|+++.+|.|||..|.|+||||||||||||+||||..+..
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~ 221 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAK 221 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Confidence 45789999999999999999999999999999999999999999999999999999999866553
No 11
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.59 E-value=9.2e-16 Score=157.36 Aligned_cols=75 Identities=29% Similarity=0.455 Sum_probs=67.8
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhhhhHHHHHhhH
Q 003954 92 PPRKKK-YHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHENIILRQEHD 166 (784)
Q Consensus 92 ~kkrR~-RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~~ 166 (784)
++|||+ ||.||..|+++||+.|++.+|||...|+-||-++.|.|.+|+|||||||+||||.+++.......+|+.
T Consensus 138 k~kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeyg 213 (332)
T KOG0494|consen 138 KKKRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYG 213 (332)
T ss_pred ccccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhc
Confidence 334444 889999999999999999999999999999999999999999999999999999999988777776664
No 12
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.57 E-value=3.2e-15 Score=154.22 Aligned_cols=67 Identities=33% Similarity=0.478 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhh
Q 003954 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (784)
Q Consensus 90 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (784)
+-|.|-|.|..+|..|..+||++|..++|.++.++.|||.-|||+||||||||||||+|+||..+++
T Consensus 195 KtRTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk 261 (317)
T KOG0848|consen 195 KTRTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKK 261 (317)
T ss_pred eeecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHH
Confidence 4567788899999999999999999999999999999999999999999999999999999876654
No 13
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.56 E-value=1.8e-15 Score=148.71 Aligned_cols=64 Identities=33% Similarity=0.486 Sum_probs=61.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhh
Q 003954 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (784)
|.||.||.||.+|+..||..|+.++|-.-.+|++||+.|+|++.||||||||||+|.||.+.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 6788999999999999999999999999999999999999999999999999999999988775
No 14
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.52 E-value=5.9e-15 Score=149.50 Aligned_cols=67 Identities=27% Similarity=0.529 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhh
Q 003954 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (784)
Q Consensus 90 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (784)
..+|.||.||+||..|+++||+.|.+..|||...|++||.+|+|.+.+|||||+|||+|+|++++.+
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 3678899999999999999999999999999999999999999999999999999999999877654
No 15
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.52 E-value=1.2e-14 Score=147.90 Aligned_cols=68 Identities=32% Similarity=0.498 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 88 NEDGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 88 ~~~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
.++++|.||.||-|+.-||+.|.+.|+++.|+--.+|.+||..|||+..||||||||||.|.||..+.
T Consensus 116 Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~ 183 (245)
T KOG0850|consen 116 NGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQ 183 (245)
T ss_pred CCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhc
Confidence 44567788899999999999999999999999999999999999999999999999999999987663
No 16
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.47 E-value=3.8e-14 Score=141.85 Aligned_cols=65 Identities=35% Similarity=0.500 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
.+..||.|+-||..|+..||+.|++.+|+++.+|.+++..|.|++.||||||||||+|.||.++.
T Consensus 141 hk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQea 205 (246)
T KOG0492|consen 141 HKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEA 205 (246)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHH
Confidence 44568889999999999999999999999999999999999999999999999999999987654
No 17
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.46 E-value=1.1e-13 Score=142.46 Aligned_cols=59 Identities=39% Similarity=0.639 Sum_probs=56.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
||.||-||.+||+.|...|++++|+++.+|++||.+|||.|.||||||||+|+|.||..
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 56789999999999999999999999999999999999999999999999999999754
No 18
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.44 E-value=3.3e-14 Score=116.39 Aligned_cols=57 Identities=46% Similarity=0.816 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
||+|+.||.+|+..||..|..++||+..++++||.+|||++.||+.||||||+++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 578899999999999999999999999999999999999999999999999999985
No 19
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.36 E-value=3e-13 Score=141.61 Aligned_cols=62 Identities=34% Similarity=0.402 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
.-||.||-||.|||..||+.|-+..|-++++|.|||..|+|.|.-|||||||||.|+||++.
T Consensus 180 qmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 180 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhh
Confidence 45889999999999999999999999999999999999999999999999999999998653
No 20
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.36 E-value=8.7e-13 Score=109.19 Aligned_cols=53 Identities=19% Similarity=0.459 Sum_probs=50.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCC----CCHHHHHHHHHHhCCCcceEEeeccchh
Q 003954 94 RKKKYHRHTPHQIQELESFFKECPH----PDEKQRSELSRRLGLESKQIKFWFQNRR 146 (784)
Q Consensus 94 krR~RtrfT~~Ql~~LE~~F~~~~~----Ps~~~R~eLA~~LgLs~rQVkvWFQNRR 146 (784)
+||.||.||.+|++.||.+|+.++| |+...|++||.+|||++++|||||||.+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4789999999999999999999999 9999999999999999999999999965
No 21
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.34 E-value=8e-13 Score=139.55 Aligned_cols=63 Identities=27% Similarity=0.541 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
.|+||.|+-||.+|+++||..|.++.||+...|+|||-.++|++.+|+|||+|||+||||++.
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrEr 172 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER 172 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhh
Confidence 477888999999999999999999999999999999999999999999999999999997543
No 22
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.27 E-value=8.1e-11 Score=116.40 Aligned_cols=186 Identities=16% Similarity=0.303 Sum_probs=139.0
Q ss_pred HHHHHHHHhhcCCCCceEecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcCh---hhHh
Q 003954 295 TAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDA---NRWA 371 (784)
Q Consensus 295 ~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~lmD~---~~W~ 371 (784)
+|..+++.+.+.+ ..|-...+.+ +..-|.+.++.. ....-|..++|..++.++.++|+|. .+|-
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~----~v~vy~~~~~~~--------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~ 68 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD----GVKIYTKPYEDS--------GLKLLKAEGVIPASPEQVFELLMDIDLRKKWD 68 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC----cEEEEEecCCCC--------CceeEEEEEEECCCHHHHHHHHhCCchhhchh
Confidence 4667888887766 7898875432 233355554432 3467889999999999999999994 4454
Q ss_pred hhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeecCCeEEEEEEeccCCCCCCCCCC
Q 003954 372 EMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSADP 451 (784)
Q Consensus 372 ~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~~~~~~~ 451 (784)
. -+.+++.++.+ + +...++|..+..|.| +.+|||.++|++.+.++|.++|+..|+|... .+....
T Consensus 69 ~----~~~~~~vl~~~-~--------~~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~-~p~~~~ 133 (193)
T cd00177 69 K----NFEEFEVIEEI-D--------EHTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDS-HPKEKG 133 (193)
T ss_pred h----cceEEEEEEEe-C--------CCeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCC-CCCCCC
Confidence 3 24445666655 2 237889999999999 9999999999999999999999999999741 122226
Q ss_pred ccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHH
Q 003954 452 FQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQR 512 (784)
Q Consensus 452 ~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR 512 (784)
++|++.+++|++|+++++|.|+||++-|++..-+.. ..++++.+.-.+..++..++.
T Consensus 134 ~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP----~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 134 YVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP----KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred cEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc----HHHHHhhhhhccHHHHHHHHH
Confidence 899999999999999999999999999999886544 344555555666666666643
No 23
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.27 E-value=1.9e-12 Score=105.13 Aligned_cols=56 Identities=45% Similarity=0.832 Sum_probs=52.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHH
Q 003954 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~K 150 (784)
++.|++|+.+|+..||+.|..++||+..++.+||.++||+.+||+.||+|||++.|
T Consensus 1 ~k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 1 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 35667899999999999999999999999999999999999999999999998754
No 24
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.26 E-value=4.5e-12 Score=132.13 Aligned_cols=76 Identities=25% Similarity=0.440 Sum_probs=70.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhhhhHHHHHhhHHH
Q 003954 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHENIILRQEHDKL 168 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~~~l 168 (784)
..||.||++|..|++.|...|+..++|.+..|++|+.++||..|.|||||||||||.||.++......+.|-+...
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyfrsm 241 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYFRSM 241 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHHHHh
Confidence 3588999999999999999999999999999999999999999999999999999999999988888887766544
No 25
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.26 E-value=2.6e-12 Score=105.06 Aligned_cols=56 Identities=46% Similarity=0.875 Sum_probs=53.5
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 96 KKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 96 R~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
++|..|+.+|+..||+.|..++||+..++++||.++||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 56778999999999999999999999999999999999999999999999999885
No 26
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.25 E-value=3.8e-12 Score=125.33 Aligned_cols=66 Identities=33% Similarity=0.501 Sum_probs=60.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhhhh
Q 003954 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHEN 158 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e~ 158 (784)
..+++|+|.|.+|+..|++.|+.++||+...|.+|+..|+|+++-||+||||||++.|++......
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~~ 115 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVE 115 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccchh
Confidence 457778889999999999999999999999999999999999999999999999999987766433
No 27
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.22 E-value=1e-12 Score=127.48 Aligned_cols=66 Identities=32% Similarity=0.444 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhhh
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHE 157 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e 157 (784)
-+++|-|+.|+..|+..||+.|+..+|++..+|.|||..|+|+++|||.||||||.|.||++++.+
T Consensus 98 ~~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 98 CRRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HHhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 356778999999999999999999999999999999999999999999999999999999876643
No 28
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.16 E-value=2.5e-11 Score=132.63 Aligned_cols=63 Identities=25% Similarity=0.441 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
..|||||||.|+......||++|.+|++|+..+..+||.+|+|+...|+|||+|||.|.||..
T Consensus 291 ~~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 291 QSRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred cccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCC
Confidence 448899999999999999999999999999999999999999999999999999999999743
No 29
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.12 E-value=1.9e-11 Score=123.42 Aligned_cols=64 Identities=33% Similarity=0.524 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
..++|..|.+|+-.||..||+.|+..+|+--..|.+||..+|+++.||+|||||||+||||+..
T Consensus 164 dG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 164 NGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHA 227 (288)
T ss_pred CccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhc
Confidence 3466777888999999999999999999999999999999999999999999999999998653
No 30
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.10 E-value=3.7e-09 Score=109.51 Aligned_cols=201 Identities=12% Similarity=0.150 Sum_probs=148.3
Q ss_pred HHHHHHHHHhhcCCCCceEecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeE-EechhHHHHHhcCh---hh
Q 003954 294 LTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMV-IINSSALIETMMDA---NR 369 (784)
Q Consensus 294 ~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V-~~~~~~LVe~lmD~---~~ 369 (784)
++.+++|+.++..+ .-|-...+.. +-.-|.+..+ +...-.-|..+++ ...+..+.+.|+|. .+
T Consensus 9 ~~~~~~~~~~~~~~-~~W~~~~~~~----gi~iy~r~~~--------~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~ 75 (222)
T cd08871 9 DADFEEFKKLCDST-DGWKLKYNKN----NVKVWTKNPE--------NSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKT 75 (222)
T ss_pred HHHHHHHHHHhcCC-CCcEEEEcCC----CeEEEEeeCC--------CCceEEEEEEEEeCCCCHHHHHHHHHChhhhhh
Confidence 47899999999654 4897764321 0111333222 2333455776765 57888999999995 56
Q ss_pred HhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeecCCeEEEEEEeccCCCCCCCC
Q 003954 370 WAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSA 449 (784)
Q Consensus 370 W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~~~~~ 449 (784)
|-.. +..++.++.+ . ....++|..+..|-| |..|||.++|..+..+ |..+|+..|++... .+..
T Consensus 76 Wd~~----~~e~~~ie~~-d--------~~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~-~P~~ 139 (222)
T cd08871 76 WDSN----MIESFDICQL-N--------PNNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKK-YPPR 139 (222)
T ss_pred hhhh----hceeEEEEEc-C--------CCCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCC-CCCC
Confidence 6665 3346666666 2 234789999999988 8999999999998776 88899999987432 2222
Q ss_pred CCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHHHHHHhhcccccc
Q 003954 450 DPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCECLAVLMSSTITV 527 (784)
Q Consensus 450 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~cerla~~~~~~~~~ 527 (784)
..++|.....+|++|++++++.|+|||+-|++..-+ +|. -+++..+.-.+..++..|+++|+.....++.+-|.
T Consensus 140 ~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 140 KGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred CCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 368999999999999999999999999999998765 333 23566666667799999999999999988877664
No 31
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.06 E-value=5.2e-09 Score=107.22 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEecCCC-CccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcC-
Q 003954 289 LIDLALTAMDELIKMAEADSPLWIKSLDG-GRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMD- 366 (784)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~~~-~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~lmD- 366 (784)
+-.+|..|.+|++++.. .+.-|....+. +..+ |.+.. ..+..-.-|..+.|...+.++++.|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~i~v-----~~~~~--------~~~~~~~~k~~~~i~~~~~~v~~~l~d~ 68 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKTVKNITV-----SWKPS--------TEFTGHLYRAEGIVDALPEKVIDVIIPP 68 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEcCCCcEE-----EEecC--------CCCCCEEEEEEEEEcCCHHHHHHHHHhc
Confidence 45688899999999987 44789776422 2121 11111 112222358888999999999999998
Q ss_pred ----hhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeec-ccccccceeeEEEEeeeeecCCeEEEEEEecc
Q 003954 367 ----ANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQV-LSPLVPVRQAKFLRFCKQHIEGVWAVVDVSID 441 (784)
Q Consensus 367 ----~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~-~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d 441 (784)
+.+|... +..++.++-| . ....++|..+-- +.++|.+|||.++||.++.++|.++|+-.|++
T Consensus 69 ~~~~r~~Wd~~----~~~~~~le~i-d--------~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~ 135 (206)
T cd08867 69 CGGLRLKWDKS----LKHYEVLEKI-S--------EDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVD 135 (206)
T ss_pred Ccccccccccc----ccceEEEEEe-C--------CCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEecc
Confidence 4678755 5667777777 2 222456653322 23579999999999999999999999999996
Q ss_pred CCCCCCCCCCccceeecCCcceEeeCC--CCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHH
Q 003954 442 TNREGLSADPFQTYRRLPSGFVVQDVP--NNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQC 514 (784)
Q Consensus 442 ~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~c 514 (784)
.-. .+....++|+...++|++|++.+ ++.|+|||+-|++..-+.. +-++++.++=+.--|+..|++|.
T Consensus 136 hp~-~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP----~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 136 IPE-RPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIP----QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CCC-CCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCCc----HHHHHhhhhhhHHHHHHHHHHhc
Confidence 542 23234789999999999999886 5789999999999864433 34466666666677888887774
No 32
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=99.02 E-value=1.6e-10 Score=119.12 Aligned_cols=64 Identities=25% Similarity=0.325 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
..++|+.|+.|+.+|+++||+.|++.+||+...|+.||..+++++..|++||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 5577899999999999999999999999999999999999999999999999999999997654
No 33
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.02 E-value=7.6e-09 Score=106.16 Aligned_cols=194 Identities=15% Similarity=0.234 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEecCCC--CccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHH-hc
Q 003954 289 LIDLALTAMDELIKMAEADSPLWIKSLDG--GRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIET-MM 365 (784)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~~~--~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~-lm 365 (784)
...+++.|++|++.+.. ++-|-...+. |. .-|.|..|. ..-.-|..++|...+..+++. |.
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~~i-----~i~~r~~~~---------~~~~~k~~~~i~~~~~~v~~~l~~ 69 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTWGD-----VVYSRNVPG---------VGKVFRLTGVLDCPAEFLYNELVL 69 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCCCC-----EEEEEEcCC---------CceEEEEEEEEcCCHHHHHHHHHc
Confidence 57888999999999954 5589776422 21 112332222 114578889999999999764 44
Q ss_pred C---hhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecc-cccccceeeEEEEeeeeecCCeEEEEEEecc
Q 003954 366 D---ANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVL-SPLVPVRQAKFLRFCKQHIEGVWAVVDVSID 441 (784)
Q Consensus 366 D---~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~-SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d 441 (784)
| +.+|-.. +..++.++.+ ++...++|.-+.-+ .++|..|||.++|+.++.+ |.++|+..|++
T Consensus 70 d~~~~~~Wd~~----~~~~~~i~~~---------d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~ 135 (208)
T cd08868 70 NVESLPSWNPT----VLECKIIQVI---------DDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVE 135 (208)
T ss_pred CccccceecCc----ccceEEEEEe---------cCCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEecc
Confidence 5 3577766 2334455554 23345666444333 3689999999999999866 77999999987
Q ss_pred CCCCCCCCCCccceeecCCcceEeeCCC--CccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHHHH
Q 003954 442 TNREGLSADPFQTYRRLPSGFVVQDVPN--NYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCECL 517 (784)
Q Consensus 442 ~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~cerl 517 (784)
... .+....++|...+++|++|+++++ +.|+|+|+-|++..-+ +|. -++++.+.-+.-.++..|+++|+.|
T Consensus 136 h~~-~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 136 HPA-MPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred CCC-CCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-Ccc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 432 222237899999999999999987 6899999999988755 333 2377777888889999999998753
No 34
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.87 E-value=2.9e-08 Score=102.31 Aligned_cols=173 Identities=14% Similarity=0.160 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcChh
Q 003954 289 LIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDAN 368 (784)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~lmD~~ 368 (784)
...|+++|++|++++-+ ..-.|-.-..+...++ |.+. .+.+.+---|..|+|..++.+|+|.+-|.+
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~gWk~~k~~~~~~v----~~k~--------~~~~~gkl~k~egvi~~~~e~v~~~l~~~e 69 (204)
T cd08904 3 FKKIAQETSQEVLGYSR-DTSGWKVVKTSKKITV----SWKP--------SRKYHGNLYRVEGIIPESPAKLIQFMYQPE 69 (204)
T ss_pred HHHHHHHHHHHHHhhhh-cccCCeEEecCCceEE----EEEE--------cCCCCceEEEEEEEecCCHHHHHHHHhccc
Confidence 35788999999999976 5678976543310000 0111 123334567899999999999999998876
Q ss_pred hHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeee-cccccccceeeEEEEeeeeecCCeEEEEEEeccCCCCCC
Q 003954 369 RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQ-VLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGL 447 (784)
Q Consensus 369 ~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~-~~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~~~ 447 (784)
...+- =..+..++.++-| ++...+.|.-++ .+-++|-+|||..+||.++.++|.++|...|++.-.. +
T Consensus 70 ~r~~W-d~~~~~~~iie~I---------d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~-P 138 (204)
T cd08904 70 HRIKW-DKSLQVYKMLQRI---------DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQC-P 138 (204)
T ss_pred hhhhh-cccccceeeEEEe---------CCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCC-C
Confidence 44322 2256668888888 233356776654 3457899999999999999999999999999974432 2
Q ss_pred CCCCccceeecCCcceEeeCCCC--ccEEEEEEeeeeccc
Q 003954 448 SADPFQTYRRLPSGFVVQDVPNN--YSKVTWIEHAEYDES 485 (784)
Q Consensus 448 ~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~ 485 (784)
....++|++..|+||+|++.+++ +|+++|+-++++.-+
T Consensus 139 p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 139 PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 23479999999999999999874 899999999777644
No 35
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.84 E-value=1.4e-09 Score=120.32 Aligned_cols=64 Identities=30% Similarity=0.567 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 90 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.+++.+|+|++|++.|+..||+.|++++||+...|++||+++++++.+|++||+|||+|++|..
T Consensus 172 ~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 172 LQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred ccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcc
Confidence 4667788899999999999999999999999999999999999999999999999999999765
No 36
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.72 E-value=3.2e-07 Score=94.61 Aligned_cols=193 Identities=11% Similarity=0.164 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcCh-
Q 003954 289 LIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDA- 367 (784)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~lmD~- 367 (784)
..+++++|+++++.+-+ .+..|-...+.. +.+.|.+... .+.+=.-|.-|+|..++.+|++.|+|.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~W~~~~~~~--------~i~v~~~~~~----~~~~~~~k~e~~i~~s~~~~~~~l~d~~ 69 (208)
T cd08903 3 YAELAESVADKMLLYRR-DESGWKTCRRTN--------EVAVSWRPSA----EFAGNLYKGEGIVYATLEQVWDCLKPAA 69 (208)
T ss_pred HHHHHHHHHHHHHhhhc-cccCCEEEEcCC--------CEEEEeeecC----CCCCcEEEEEEEecCCHHHHHHHHHhcc
Confidence 36789999999999974 677897764331 1222222110 111112688899999999999999965
Q ss_pred ----hhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccc---cccceeeEEEEeeeeecCCeEEEEEEec
Q 003954 368 ----NRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSP---LVPVRQAKFLRFCKQHIEGVWAVVDVSI 440 (784)
Q Consensus 368 ----~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~Sp---Lvp~Re~~fLRyckq~~~g~w~VvDvS~ 440 (784)
.+|-.. +..++-|+-| ++...+.|. ..+.| +|.+|||..+|+.++.++|.++|.-.|+
T Consensus 70 ~~~r~~W~~~----~~~~~vle~i---------d~~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv 134 (208)
T cd08903 70 GGLRVKWDQN----VKDFEVVEAI---------SDDVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNV 134 (208)
T ss_pred chhhhhhhhc----cccEEEEEEe---------cCCEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEec
Confidence 588887 3445555555 122334444 45555 7999999999999999999988777776
Q ss_pred cCCCCCCCCCCccceeecCCcceEeeCCC--CccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHH
Q 003954 441 DTNREGLSADPFQTYRRLPSGFVVQDVPN--NYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQC 514 (784)
Q Consensus 441 d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~c 514 (784)
..-. -+....++|+++.|+|++|...++ +.|+|+|+-|++..-+ +| +.++++.++=...-.+..|+++.
T Consensus 135 ~h~~-~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~-iP---~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 135 EHPL-CPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY-LP---QTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred cCCC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC-cC---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 6422 122237899999999999999964 5899999988876533 44 23344333323334455554443
No 37
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.67 E-value=4.4e-07 Score=93.58 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=101.2
Q ss_pred CCceeeeecceeEEechhHHH-HHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceee
Q 003954 341 GFVTEASRETGMVIINSSALI-ETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQA 419 (784)
Q Consensus 341 ~~~~eAsR~~~~V~~~~~~LV-e~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~ 419 (784)
+...-.-|....|.-.+..++ .++.++.+|-.. +..+++++.| ++...+.|--+.-+-|+ |.|||
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~----~~~~~~ie~l---------d~~tdi~~y~~~~~~P~-~~RD~ 113 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDED----FLQWKVVETL---------DKQTEVYQYVLNCMAPH-PSRDF 113 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhh----cceeEEEEEe---------CCCcEEEEEEeecCCCC-CCCEE
Confidence 444456777777777777664 567778888877 3457888887 34456777777777776 99999
Q ss_pred EEEEeeee-ecCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeeccc
Q 003954 420 KFLRFCKQ-HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDES 485 (784)
Q Consensus 420 ~fLRyckq-~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~ 485 (784)
+.+|+-++ +++|..+|+..|++.....+ ..++|+..+-+|++|+++++|.|+||++-|++..-+
T Consensus 114 v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 114 VVLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred EEEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 99999765 56999999999999765432 268999999999999999999999999999987544
No 38
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.64 E-value=6.1e-07 Score=91.78 Aligned_cols=162 Identities=15% Similarity=0.234 Sum_probs=119.9
Q ss_pred HHHHHHHHHhhcCCCCceEecCC-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcCh-hhHh
Q 003954 294 LTAMDELIKMAEADSPLWIKSLD-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDA-NRWA 371 (784)
Q Consensus 294 ~~Am~El~~la~~~~plWi~~~~-~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~lmD~-~~W~ 371 (784)
+.+.++||+-+...+.-|.-..+ .|.+| |.|..| .++...+=|..++|...+.++++.|+|. .+|-
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~gi~I-----~~k~~~-------~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd 71 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSDHVEL-----AFKKVD-------DGHPLRLWRASTEVEAPPEEVLQRILRERHLWD 71 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCCcEEE-----EEEeCC-------CCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccc
Confidence 47788999999988999977532 22222 233222 2344557788889998999999877764 3566
Q ss_pred hhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeee-ecCCeEEEEEEeccCCCCCCCCC
Q 003954 372 EMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ-HIEGVWAVVDVSIDTNREGLSAD 450 (784)
Q Consensus 372 ~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq-~~~g~w~VvDvS~d~~~~~~~~~ 450 (784)
.. +.+++.++-| + ....+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++....- +.
T Consensus 72 ~~----~~~~~vie~i-d--------~~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-p~- 135 (197)
T cd08869 72 DD----LLQWKVVETL-D--------EDTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-PL- 135 (197)
T ss_pred hh----hheEEEEEEe-c--------CCcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-CC-
Confidence 55 4556676766 2 234578888888877 59999999998875 6788999999998642111 12
Q ss_pred CccceeecCCcceEeeCCCCccEEEEEEeeeec
Q 003954 451 PFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYD 483 (784)
Q Consensus 451 ~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d 483 (784)
.++|+..+++|++|++..+|.|+|||+-|++.-
T Consensus 136 g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~ 168 (197)
T cd08869 136 GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLR 168 (197)
T ss_pred CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCC
Confidence 789999999999999999999999999999864
No 39
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.62 E-value=3.5e-07 Score=107.41 Aligned_cols=133 Identities=16% Similarity=0.247 Sum_probs=108.0
Q ss_pred eeeecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeee--cccccccceeeEEE
Q 003954 345 EASRETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQ--VLSPLVPVRQAKFL 422 (784)
Q Consensus 345 eAsR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~--~~SpLvp~Re~~fL 422 (784)
-+=|+.|+|...+.+|.|.+|+.+...-.+=..+..++-++-| +|...++|.-++ .+...+-+|||+++
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~I---------D~htdI~Y~~~~~~~~~~~ispRDFV~~ 297 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEV---------DGHTAILYHRLQLDWFPMFVWPRDLCYV 297 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEe---------cCCeEEEEEEeccccccCccCcceeEEE
Confidence 5778999999999999999997773333333446778888888 577788888775 45567778999999
Q ss_pred EeeeeecCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCC--C--CccEEEEEEeeeeccccc
Q 003954 423 RFCKQHIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVP--N--NYSKVTWIEHAEYDESIV 487 (784)
Q Consensus 423 Ryckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~--n--G~skVtwVeH~e~d~~~v 487 (784)
||-++.+||+++|+=+|+..-..- ....++|.+..|+||+|.+++ + -.|.|+|+-|++..-|..
T Consensus 298 Rywrr~eDGsYvil~~Sv~Hp~cP-P~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 298 RYWRRNDDGSYVVLFRSREHENCG-PQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEEcCCCcEEEeeeeeecCCCC-CCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 999999999999999998854322 234799999999999999964 3 379999999999998874
No 40
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.55 E-value=5.1e-08 Score=102.35 Aligned_cols=62 Identities=24% Similarity=0.532 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (784)
...|||+||.+..-..+.||.+|..++.|+......+|++|+|....|+|||+|+|+|.||.
T Consensus 306 ~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm 367 (385)
T KOG1168|consen 306 GGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 367 (385)
T ss_pred ccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHh
Confidence 44678899999999999999999999999999999999999999999999999999998874
No 41
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.52 E-value=1.3e-06 Score=90.18 Aligned_cols=192 Identities=12% Similarity=0.190 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEecC--CCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhc-
Q 003954 289 LIDLALTAMDELIKMAEADSPLWIKSL--DGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMM- 365 (784)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~--~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~lm- 365 (784)
...++.+|++|++++.+ .+..|-... +.|..| |.+.+|.+ | -+-|.-++|..++.+|++.|.
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~gi~v-----~s~~~~~~------~---k~~k~e~~i~~~~~~l~~~l~~ 70 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENGDKV-----LSKVVPDI------G---KVFRLEVVVDQPLDNLYSELVD 70 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCCCEE-----EEEEcCCC------C---cEEEEEEEecCCHHHHHHHHHh
Confidence 56889999999999986 666897652 222122 23444433 1 455667799999999995555
Q ss_pred Ch---hhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccc--cccceeeEEEEeeeeecCCeEEEEEEec
Q 003954 366 DA---NRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSP--LVPVRQAKFLRFCKQHIEGVWAVVDVSI 440 (784)
Q Consensus 366 D~---~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~Sp--Lvp~Re~~fLRyckq~~~g~w~VvDvS~ 440 (784)
|. .+|... |.-.++| ... +..-.++|. ..++.| +|..|||..+|+.++.+++. +++..|.
T Consensus 71 d~e~~~~W~~~-------~~~~~vl-~~i-----d~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~ 135 (209)
T cd08905 71 RMEQMGEWNPN-------VKEVKIL-QRI-----GKDTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMAT 135 (209)
T ss_pred chhhhceeccc-------chHHHHH-hhc-----CCCceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEee
Confidence 53 567666 4444444 221 122345674 667766 79999999999999986554 5666775
Q ss_pred cCCCCCCCCCCccceeecCCcceEeeCCC--CccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHH
Q 003954 441 DTNREGLSADPFQTYRRLPSGFVVQDVPN--NYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (784)
Q Consensus 441 d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 515 (784)
+.-. .+....++|.+..+.|++|+++++ |.|+|+|+-|++..-+ +|. .|++..++=..-.++..|+++.+
T Consensus 136 ~~~~-~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 136 HFGL-MPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred cCCC-CCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 5322 122237899999999999999988 9999999999987765 333 34655555556678888877754
No 42
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.39 E-value=4.6e-06 Score=85.46 Aligned_cols=192 Identities=12% Similarity=0.147 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEecCCCCccccChHHHhhhCCCCCCCC-CCCCceeeeecceeEEechhHHHHHhcC-
Q 003954 289 LIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMK-PNGFVTEASRETGMVIINSSALIETMMD- 366 (784)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~-~~~~~~eAsR~~~~V~~~~~~LVe~lmD- 366 (784)
...+|.+.-+++++--+.++-.|-.-...+..+ +..+ ..-|.+---|.-|+|.-.+..|++.+-+
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~~~-------------v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~ 69 (202)
T cd08902 3 IASKTTKLQNTLIQYHSILEEEWRVAKKSKDVT-------------VWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPG 69 (202)
T ss_pred HHHHHHHHHHHHHHhccccccCcEEEEeCCCEE-------------EEEecCCcCCCceEEEEEEecCCHHHHHHHHhcc
Confidence 356787888889997777999996653221011 1112 2234445567778888889999999998
Q ss_pred --hhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeecCCeEEEEEEeccCCC
Q 003954 367 --ANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNR 444 (784)
Q Consensus 367 --~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~ 444 (784)
+.+|=+. |..|+.|+-| ..+++-.-|.=.-.+-++|-+|||.-+||+++.++|. +.|=||++.-.
T Consensus 70 ~~r~~Wd~~----v~~~~Iie~I--------d~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~ 136 (202)
T cd08902 70 PYRLDWDSL----MTSMDIIEEF--------EENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEE 136 (202)
T ss_pred cchhcccch----hhheeHhhhh--------cCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCC
Confidence 5589876 6667777766 2334333365566777899999999999999999998 77788877543
Q ss_pred CCCCCCCccceeecCCcceEeeCCCC--ccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHH
Q 003954 445 EGLSADPFQTYRRLPSGFVVQDVPNN--YSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQ 513 (784)
Q Consensus 445 ~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ 513 (784)
.. +.++|.+..|+||++++.+|| .|+.||+-++++.-+- =+-++++.++=..=-....|+++
T Consensus 137 --~p-pg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~L----PqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 137 --AR-PNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGML----PQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred --CC-CCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCCc----cHHHHHHHhhHHHHHHHHHHHHh
Confidence 22 279999999999999999988 6778899997776542 23345444433322334455443
No 43
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.35 E-value=1.1e-05 Score=83.61 Aligned_cols=195 Identities=11% Similarity=0.147 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEec-CC-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHH-HHh
Q 003954 288 MLIDLALTAMDELIKMAEADSPLWIKS-LD-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALI-ETM 364 (784)
Q Consensus 288 ~~~~lA~~Am~El~~la~~~~plWi~~-~~-~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LV-e~l 364 (784)
-....+.+||++|.++... +..|.-. .. .|..| |.+..|.+ ...| |.-++|...+..|. +.|
T Consensus 5 ~~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~gi~V-----~s~~~~~~----~~~f-----k~~~~v~~~~~~l~~~ll 69 (209)
T cd08906 5 EYVRQGKEALAVVEQILAQ-EENWKFEKNNDNGDTV-----YTLEVPFH----GKTF-----ILKAFMQCPAELVYQEVI 69 (209)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEecCCCCEE-----EEeccCCC----CcEE-----EEEEEEcCCHHHHHHHHH
Confidence 3567799999999999764 4579753 22 33122 11111111 1223 66677788888995 688
Q ss_pred cChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccc--cccceeeEEEEeeeeecCCeEEEEEEeccC
Q 003954 365 MDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSP--LVPVRQAKFLRFCKQHIEGVWAVVDVSIDT 442 (784)
Q Consensus 365 mD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~Sp--Lvp~Re~~fLRyckq~~~g~w~VvDvS~d~ 442 (784)
.|.+...+=.+.+. .++.|+-+ + ..-.+.| +.-.|.+ .|..|||-.+|+.++.+++ ++++..|++.
T Consensus 70 ~D~~~~~~W~~~~~-~~~vi~~~-~--------~~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~ 137 (209)
T cd08906 70 LQPEKMVLWNKTVS-ACQVLQRV-D--------DNTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH 137 (209)
T ss_pred hChhhccccCccch-hhhheeec-c--------CCcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec
Confidence 88765444433333 35665555 1 1224557 6666664 6899999999999998888 6777788764
Q ss_pred CCCCCCCCCccceeecCCcceEeeC--CCCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHH
Q 003954 443 NREGLSADPFQTYRRLPSGFVVQDV--PNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQC 514 (784)
Q Consensus 443 ~~~~~~~~~~~~~~r~PSGclIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~c 514 (784)
.. .+....++|.+..++|++|++. .+|.|+|||+-|+|..-+ +|. .+++..++=..--.+..|.++.
T Consensus 138 ~~-~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~---~lvN~~~~~~~~~~~~~LR~~~ 206 (209)
T cd08906 138 SH-KPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPR---YLIHQSLAATMFEFASHLRQRI 206 (209)
T ss_pred CC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1222378999999999999985 577999999999987653 332 3455544444444555554443
No 44
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.21 E-value=8e-07 Score=93.30 Aligned_cols=51 Identities=25% Similarity=0.542 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 101 HTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 101 fT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
|...-...|..+|..++||+..++.+||+.+||+..||-.||+|||+|+|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 566668899999999999999999999999999999999999999999983
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.12 E-value=4.1e-05 Score=79.13 Aligned_cols=162 Identities=17% Similarity=0.253 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhhcCCCCceEecCC-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcC-hhhH
Q 003954 293 ALTAMDELIKMAEADSPLWIKSLD-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMD-ANRW 370 (784)
Q Consensus 293 A~~Am~El~~la~~~~plWi~~~~-~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~lmD-~~~W 370 (784)
-+..+++|++.|+.--=-|+.... .+.|. .|.| +..|...-.-|....+...+.+++..|+| +.+|
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~~~el----~~~k--------~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~W 78 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSEQAEL----SYKK--------VSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHLW 78 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCcEEE----EEec--------cCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHHH
Confidence 447778888887755556665321 11111 1112 22344445667777777888888855554 5678
Q ss_pred hhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeee-eecCCeEEEEEEeccCCCCCCCC
Q 003954 371 AEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCK-QHIEGVWAVVDVSIDTNREGLSA 449 (784)
Q Consensus 371 ~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyck-q~~~g~w~VvDvS~d~~~~~~~~ 449 (784)
-.. +..++.|+-| + ..-.+.|..+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.-. .+.
T Consensus 79 d~~----~~e~~vIe~l-d--------~~~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~--~P~ 142 (204)
T cd08908 79 DVD----LLDSKVIEIL-D--------SQTEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR--APV 142 (204)
T ss_pred HHH----hhheEeeEec-C--------CCceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc--CCc
Confidence 777 4456666666 2 222578888889988 7999999997765 478999999999988542 222
Q ss_pred CCccceeecCCcceEeeCCCCccEEEEEEeeeec
Q 003954 450 DPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYD 483 (784)
Q Consensus 450 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d 483 (784)
..+|.+.+-+|++|+++++|.|+||.+-|++--
T Consensus 143 -~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg 175 (204)
T cd08908 143 -AGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR 175 (204)
T ss_pred -CceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC
Confidence 368999999999999999999999999999864
No 46
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.05 E-value=8.1e-05 Score=76.93 Aligned_cols=200 Identities=18% Similarity=0.103 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcChh
Q 003954 289 LIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDAN 368 (784)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~lmD~~ 368 (784)
+++=+...|.|+++..+. +.-|....+.. +..=|.|..|.+ ..-+-|.-|+|..+...+.++|.|.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~~----~i~v~~r~~~~~--------~~~~~k~e~~i~~~~~~~~~vl~d~~ 69 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKESE----GIRVYYKFEPDG--------SLLSLRMEGEIDGPLFNLLALLNEVE 69 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccCC----CeEEEEEeCCCC--------CEEEEEEEEEecCChhHeEEEEehhh
Confidence 445566788899988776 66798875431 122233333332 24677888999999999999999998
Q ss_pred hHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEE-Eeeeee-cCCeEEEEEEeccCCCC-
Q 003954 369 RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFL-RFCKQH-IEGVWAVVDVSIDTNRE- 445 (784)
Q Consensus 369 ~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fL-Ryckq~-~~g~w~VvDvS~d~~~~- 445 (784)
...+-+|.. ..++.++.+ + ..-++.|..+-+|-| +..||+.+. +.+.++ ++|..+|+=.|++.-..
T Consensus 70 ~~~~W~p~~-~~~~~l~~~-~--------~~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~ 138 (215)
T cd08877 70 LYKTWVPFC-IRSKKVKQL-G--------RADKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEF 138 (215)
T ss_pred hHhhhcccc-eeeEEEeec-C--------CceEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCccc
Confidence 777777763 345666655 2 123677878888888 888999975 556777 89999999999985432
Q ss_pred -------CCCCC-CccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHH
Q 003954 446 -------GLSAD-PFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (784)
Q Consensus 446 -------~~~~~-~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 515 (784)
-+... .++|....-+|++|+++++|.|+|+++-|++-.-+-+|.=+ ++...--.+...+..|++.|+
T Consensus 139 ~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~l---iN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 139 LKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSL---LNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred ccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 12233 68999999999999999999999999999763322255432 333333345566677766665
No 47
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.99 E-value=8.1e-05 Score=76.91 Aligned_cols=151 Identities=16% Similarity=0.268 Sum_probs=110.4
Q ss_pred eeeecceeEE-echhHHHHHhcChh---hHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeE
Q 003954 345 EASRETGMVI-INSSALIETMMDAN---RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAK 420 (784)
Q Consensus 345 eAsR~~~~V~-~~~~~LVe~lmD~~---~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~ 420 (784)
-.=|+.+.+. ..+..|.++|+|.+ +|... ++. .++.+ + .+ ..++|-.+..|-| |..|||.
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~---~~~---~~~~~-~-------~~-~~i~y~~~k~PwP-vs~RD~V 112 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY---VKE---LYEKE-C-------DG-ETVIYWEVKYPFP-LSNRDYV 112 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH---HHh---heeec-C-------CC-CEEEEEEEEcCCC-CCCceEE
Confidence 3678788887 79999999999965 56655 221 22333 1 12 3678999999999 9999999
Q ss_pred EEEeeee-ecCC--eEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeeccccccccccccccc
Q 003954 421 FLRFCKQ-HIEG--VWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSS 497 (784)
Q Consensus 421 fLRyckq-~~~g--~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~s 497 (784)
++|-... ..+| .|+|+..|.+.-. .+....++|....-+|++|++..++.|+|+++-|.+-.- .+|. -+++.
T Consensus 113 ~~r~~~~~~~~~~~~~iv~~~s~~~p~-~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG-~IP~---wlvN~ 187 (207)
T cd08910 113 YIRQRRDLDVEGRKIWVILARSTSLPQ-LPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGG-MIPS---WLINW 187 (207)
T ss_pred EEEEeccccCCCCeEEEEEecCCCCCC-CCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCC-cchH---HHHHH
Confidence 9964443 3344 6899888876431 222237899999999999999988899999999988532 3433 24677
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 003954 498 GMGFGAPKWVATLQRQCEC 516 (784)
Q Consensus 498 g~afGA~rwla~LqR~cer 516 (784)
-...+...|+..|+..|..
T Consensus 188 ~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 188 AAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred HHHHhhHHHHHHHHHHHhc
Confidence 7778888999999888863
No 48
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.90 E-value=0.00016 Score=72.95 Aligned_cols=153 Identities=13% Similarity=0.135 Sum_probs=104.8
Q ss_pred eeeecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEe
Q 003954 345 EASRETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRF 424 (784)
Q Consensus 345 eAsR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRy 424 (784)
-.-|..++|..++.++.+++.|.+.|.+-=|. +...+|| .... ..-.++|..+..+=| |..|||.+.|.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~----~~~~~vi-e~~~-----~~~~i~~~~~~~p~p-vs~Rdfv~~~~ 109 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPN----CKESRVL-KRTD-----DNERSVYTVIDLPWP-VKDRDMVLRST 109 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh----cceEEEe-ecCC-----CCcEEEEEEEecccc-cCCceEEEEEE
Confidence 35588889999999999999999887655443 3444455 3211 113556666666555 78999998765
Q ss_pred eeee-cCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhH
Q 003954 425 CKQH-IEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGA 503 (784)
Q Consensus 425 ckq~-~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA 503 (784)
.... ++|..+|.=.|.+... +....++|.+.+-+|+.|++.++|.|+|+++-|++..-+...-+.+.+. .=+.
T Consensus 110 ~~~~~~~~~~~i~~~s~~~~~--P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~----~~~~ 183 (195)
T cd08876 110 TEQDADDGSVTITLEAAPEAL--PEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFA----KDAP 183 (195)
T ss_pred EEEcCCCCEEEEEeecCCccC--CCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHH----HHHH
Confidence 4433 3677777666665431 2122678999999999999999999999999999887544434444443 3345
Q ss_pred HHHHHHHHHHH
Q 003954 504 PKWVATLQRQC 514 (784)
Q Consensus 504 ~rwla~LqR~c 514 (784)
.+++++|.++|
T Consensus 184 ~~~l~~l~~~~ 194 (195)
T cd08876 184 YNTLENLRKQL 194 (195)
T ss_pred HHHHHHHHHhh
Confidence 67888886665
No 49
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.86 E-value=0.00014 Score=75.21 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=87.4
Q ss_pred ceeEEechhHHHHHhcChh---hHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeeccccc-ccceeeEEEEee
Q 003954 350 TGMVIINSSALIETMMDAN---RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPL-VPVRQAKFLRFC 425 (784)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~---~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpL-vp~Re~~fLRyc 425 (784)
-++|...+.+|++.|.|.. +|-.+ +++.+|| ..- +....++|.....|=|+ ++.|||..+|-.
T Consensus 50 e~~v~as~~~v~~ll~D~~~r~~Wd~~-------~~~~~vl-~~~-----~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~ 116 (205)
T cd08874 50 AGVIKAPLATVWKAVKDPRTRFLYDTM-------IKTARIH-KTF-----TEDICLVYLVHETPLCLLKQPRDFCCLQVE 116 (205)
T ss_pred EEEEcCCHHHHHHHHhCcchhhhhHHh-------hhheeee-eec-----CCCeEEEEEEecCCCCCCCCCCeEEEEEEE
Confidence 4478889999999998875 67776 6666666 321 23346777777666555 399999999955
Q ss_pred eeecCCeEEEEEEeccC-CCCCCCCC-CccceeecCCcceEeeC---CCCccEEEEEEeeeec
Q 003954 426 KQHIEGVWAVVDVSIDT-NREGLSAD-PFQTYRRLPSGFVVQDV---PNNYSKVTWIEHAEYD 483 (784)
Q Consensus 426 kq~~~g~w~VvDvS~d~-~~~~~~~~-~~~~~~r~PSGclIq~~---~nG~skVtwVeH~e~d 483 (784)
...+++.. |.=.|++. ..+ ... .++|.+.+++|++|+++ ++|.|+||.+-|+|.-
T Consensus 117 ~~~~~~~v-i~~~SV~~~~~P--~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 117 AKEGELSV-VACQSVYDKSMP--EPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred EECCCcEE-EEEEecccccCC--CCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 55455544 66677765 222 122 58999999999999999 9999999999999975
No 50
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.82 E-value=0.00011 Score=75.63 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhhcCCCCceEecCC-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEE-echhHHHHHhcChhhH
Q 003954 293 ALTAMDELIKMAEADSPLWIKSLD-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVI-INSSALIETMMDANRW 370 (784)
Q Consensus 293 A~~Am~El~~la~~~~plWi~~~~-~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~-~~~~~LVe~lmD~~~W 370 (784)
-+..+.+|++.+....=-|+.... .+.|+ |.|.-++ |...--=|.+.-|. ..+.-|-++|.|+..|
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~vev-----~~kk~~d-------~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~W 78 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDNTEL-----ACKKVGD-------GHPLRLWKVSTEVEAPPSVVLQRVLRERHLW 78 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCCcEE-----EEEeCCC-------CCceEEEEEEEEecCCCHHHHHHHhhchhhh
Confidence 447888999999877788988532 22222 1111111 11111112222222 3455667999999999
Q ss_pred hhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeee-eecCCeEEEEEEeccCCCCCCCC
Q 003954 371 AEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCK-QHIEGVWAVVDVSIDTNREGLSA 449 (784)
Q Consensus 371 ~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyck-q~~~g~w~VvDvS~d~~~~~~~~ 449 (784)
=+. +-+.++|+.| .. .+ ++-|=-+.-| +.+|+|||.+||.-+ .+..|.-+|+.+|++....-+
T Consensus 79 D~~----m~e~~~Ie~L-d~-----n~---dI~yY~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp-- 142 (205)
T cd08907 79 DED----LLHSQVIEAL-EN-----NT---EVYHYVTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQL-- 142 (205)
T ss_pred hHH----HHhhhhheee-cC-----CC---EEEEEEecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCC--
Confidence 887 4668999988 21 11 2333223233 568999999999864 467789999999998654332
Q ss_pred CCccceeecCCcceEeeCCCCccEEEEEEeeeecccc
Q 003954 450 DPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESI 486 (784)
Q Consensus 450 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~ 486 (784)
..-+|+--+=|||||++++.|.|+||-|-|++..-+.
T Consensus 143 ~~gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 143 EAGVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGRS 179 (205)
T ss_pred CCCeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCCC
Confidence 2349999999999999999999999999999875443
No 51
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.80 E-value=0.0005 Score=70.98 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=133.1
Q ss_pred HHHHHHhhcCCC--CceEecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeE-EechhHHHHHhcChh---hH
Q 003954 297 MDELIKMAEADS--PLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMV-IINSSALIETMMDAN---RW 370 (784)
Q Consensus 297 m~El~~la~~~~--plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V-~~~~~~LVe~lmD~~---~W 370 (784)
++||+.+.+... .-|-..++....-....-|.|.-+ |...-.=|..+++ .+.+..|.++|+|.+ +|
T Consensus 8 ~~~~~~~~~~~~~~~~W~~~~~k~~~~~~i~vy~r~~~--------~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~W 79 (209)
T cd08870 8 LRDLVQELQEGAEGQAWQQVMDKSTPDMSYQAWRRKPK--------GTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKW 79 (209)
T ss_pred HHHHHHHhcCcCCCCcceEhhhccCCCceEEEEecccC--------CCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhh
Confidence 345666655443 479877543111111222333321 2223456777877 569999999999965 66
Q ss_pred hhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeecCCeEEEEEEeccCCCCCCCCC
Q 003954 371 AEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSAD 450 (784)
Q Consensus 371 ~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~~~~~~ 450 (784)
-.. +...++| .... +-...++|-.+..|-|+ -.||+.+.|-..+..+|..+|+=.|++... .+..
T Consensus 80 d~~-------~~~~~~l-e~~~----~~~~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~-~P~~- 144 (209)
T cd08870 80 DET-------VIEHETL-EEDE----KSGTEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPYPS-VPRS- 144 (209)
T ss_pred hhh-------eeeEEEE-EecC----CCCcEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcCCC-CCCC-
Confidence 666 4445555 3211 10147899999999988 899999998777777899988888877521 1212
Q ss_pred CccceeecCCcceEeeC--CCCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHHH
Q 003954 451 PFQTYRRLPSGFVVQDV--PNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCEC 516 (784)
Q Consensus 451 ~~~~~~r~PSGclIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~cer 516 (784)
.++|.+.+=||++|++. .+|.++|+++-|.+- ...+|. -|++.....|+..||..|.+.|..
T Consensus 145 ~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 145 GRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred CcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCH---HHHHHHHHhhhHHHHHHHHHHHhc
Confidence 58999999999999999 788999999999863 223554 357888889999999999888853
No 52
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.80 E-value=1.2e-05 Score=83.87 Aligned_cols=58 Identities=24% Similarity=0.546 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHH
Q 003954 95 KKKYHRHTPHQIQELESFFK---ECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~---~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (784)
||+|+.|+..-.+.|...|. .+|||+...+++||+++|++-.||-.||.|+|-+.||.
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKN 249 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhh
Confidence 67788899999999999994 58999999999999999999999999999999998864
No 53
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.60 E-value=4.9e-05 Score=78.55 Aligned_cols=65 Identities=29% Similarity=0.636 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 90 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
...+.++.|+.++..|+..++..|...++|+...+++|+..+|++++.+++||||+|++.++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 149 SNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 35577888999999999999999999999999999999999999999999999999999997654
No 54
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.55 E-value=0.0019 Score=68.19 Aligned_cols=194 Identities=14% Similarity=0.187 Sum_probs=123.8
Q ss_pred HHHHHHHHHhhcC--CCCceEecCC-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEE-echhHHHHHhcChhh
Q 003954 294 LTAMDELIKMAEA--DSPLWIKSLD-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVI-INSSALIETMMDANR 369 (784)
Q Consensus 294 ~~Am~El~~la~~--~~plWi~~~~-~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~-~~~~~LVe~lmD~~~ 369 (784)
.+-.+|.+++|+. ++.-|--..+ +|. .=|.|..+.+ |+....=|+.++|. ..+..+.++|.|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~W~l~~~~~gi-----kVy~r~~~~s------g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~ 77 (235)
T cd08872 9 DEKVQEQLTYALEDVGADGWQLFAEEGEM-----KVYRREVEED------GVVLDPLKATHAVKGVTGHEVCHYFFDPDV 77 (235)
T ss_pred HHHHHHHHHHHHccCCCCCCEEEEeCCce-----EEEEEECCCC------CceeeeEEEEEEECCCCHHHHHHHHhChhh
Confidence 4566788999865 5557966542 321 1122222221 33344678888888 889999999999874
Q ss_pred HhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeecC-------CeEEEEEEeccC
Q 003954 370 WAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIE-------GVWAVVDVSIDT 442 (784)
Q Consensus 370 W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~~-------g~w~VvDvS~d~ 442 (784)
-.+=... +..++.++-| +....+.|..+-.|=| +..|||.|+|+-++.++ +.|+|+..|++.
T Consensus 78 r~~Wd~~-~~~~~vie~l---------~~~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h 146 (235)
T cd08872 78 RMDWETT-LENFHVVETL---------SQDTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH 146 (235)
T ss_pred HHHHHhh-hheeEEEEec---------CCCCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccC
Confidence 3332222 2334555555 2233567888888999 69999999999999876 789999999874
Q ss_pred CCCCCCCCCccceee---cCCcceEee------C--CCCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHH
Q 003954 443 NREGLSADPFQTYRR---LPSGFVVQD------V--PNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQ 511 (784)
Q Consensus 443 ~~~~~~~~~~~~~~r---~PSGclIq~------~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~Lq 511 (784)
-. .+....++|.+. +=.|.+|.+ + .||.|+||++-|++---+--.-+ ++.....++-++|..|-
T Consensus 147 ~~-~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~iP~wv----vn~~~k~~~P~~l~~~~ 221 (235)
T cd08872 147 DS-APLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWAPASV----LRAVYKREYPKFLKRFT 221 (235)
T ss_pred cc-CCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCccHHH----HHHHHHhhchHHHHHHH
Confidence 32 122236777765 223333332 1 58899999999997654443333 45555666777777775
Q ss_pred HHH
Q 003954 512 RQC 514 (784)
Q Consensus 512 R~c 514 (784)
-++
T Consensus 222 ~~~ 224 (235)
T cd08872 222 SYV 224 (235)
T ss_pred HHH
Confidence 544
No 55
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.47 E-value=2.1e-05 Score=60.83 Aligned_cols=34 Identities=38% Similarity=0.752 Sum_probs=28.8
Q ss_pred cCCCCCHHHHHHHHHHhCCCcceEEeeccchhhH
Q 003954 115 ECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ 148 (784)
Q Consensus 115 ~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak 148 (784)
.+|||+..++++||+++||+.+||..||-|.|.+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999998864
No 56
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.44 E-value=0.0017 Score=67.05 Aligned_cols=152 Identities=11% Similarity=0.123 Sum_probs=110.8
Q ss_pred eeecceeE-EechhHHHHHhcChh---hHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEE
Q 003954 346 ASRETGMV-IINSSALIETMMDAN---RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKF 421 (784)
Q Consensus 346 AsR~~~~V-~~~~~~LVe~lmD~~---~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~f 421 (784)
.=|+.+++ ...+..+++.|+|.+ +|-.. +...++| .-.. +-...++|..+..|-|+ -.||+.+
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~-------~~~~~~l-e~~~----~~~~~i~y~~~~~P~P~-s~RD~V~ 112 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT-------AVELEVV-DEDP----ETGSEIIYWEMQWPKPF-ANRDYVY 112 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh-------heeEEEE-EccC----CCCCEEEEEEEECCCCC-CCccEEE
Confidence 46665644 788999999999986 67666 4555666 3211 11337899999999996 8999999
Q ss_pred EEeeeeec-CCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCC---CCccEEEEEEeeeecccc-cccccccccc
Q 003954 422 LRFCKQHI-EGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVP---NNYSKVTWIEHAEYDESI-VHHLCRPLLS 496 (784)
Q Consensus 422 LRyckq~~-~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~---nG~skVtwVeH~e~d~~~-v~~l~rpl~~ 496 (784)
.|-..+.+ +|.++|+-.|++... .+....++|.....+|++|++.. ++.|+|+++-|. |+.. +|.- +++
T Consensus 113 ~r~~~~~~~~~~~~i~~~sv~hp~-~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~~---lvN 186 (207)
T cd08911 113 VRRYIIDEENKLIVIVSKAVQHPS-YPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPSY---ITS 186 (207)
T ss_pred EEEEEEcCCCCEEEEEEecCCCCC-CCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCHH---HHH
Confidence 98876665 577889888887421 11123689999999999999983 677999988885 5553 6543 355
Q ss_pred cccchhHHHHHHHHHHHHHH
Q 003954 497 SGMGFGAPKWVATLQRQCEC 516 (784)
Q Consensus 497 sg~afGA~rwla~LqR~cer 516 (784)
.-...++-.||..|++-|..
T Consensus 187 ~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 187 WVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHHhhccHHHHHHHHHHhc
Confidence 56677788899999887753
No 57
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=97.43 E-value=0.011 Score=61.36 Aligned_cols=176 Identities=20% Similarity=0.304 Sum_probs=102.9
Q ss_pred CCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecc-cChHHHHHhhhccccchhhhhhcCCCccceeeec
Q 003954 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLP-MTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHI 638 (784)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~i 638 (784)
..++|.... ..++|+|..++..+ +.+...++...++ +|++.+|++|.|...|.+||..... .+.+-.+
T Consensus 21 ~~~~W~~~~---~~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e--~~~ie~~ 89 (222)
T cd08871 21 STDGWKLKY---NKNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE--SFDICQL 89 (222)
T ss_pred CCCCcEEEE---cCCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce--eEEEEEc
Confidence 346899775 35789999988632 3344556666666 9999999999999999999975432 2334444
Q ss_pred ccCCCCCCeEEEEEcccCC-CCCCceEEEEeeccCCCccEEEEe-ecCcccccccccCCCCCC--ccccCCccEEcCCCC
Q 003954 639 AKGQAPGNCASLLRAGAMN-VNDSGMLILQETWNDSSGSLVVYA-PVDVPSMSMVMNGGDSTC--VALLPSGFAILPDGY 714 (784)
Q Consensus 639 a~g~~~gn~vsll~~~~~~-~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~D~~~--v~lLPSGF~I~Pdg~ 714 (784)
+.++.|.-...+..- -..++.++++..+.+. ++++|++ .++-+.+ ...+.+ +..+.+||.|-|.+
T Consensus 90 ----d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~-----P~~~g~VR~~~~~~g~~i~p~~- 158 (222)
T cd08871 90 ----NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKY-----PPRKGFVRAISLLTGYLIRPTG- 158 (222)
T ss_pred ----CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCC-----CCCCCeEEeEEEccEEEEEECC-
Confidence 345555444443222 3446777777655445 7766543 3332221 011122 23567777777732
Q ss_pred CCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHHH-HhhHhHHHHHHHHHHhhc
Q 003954 715 FGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVET-VNNLISCTIQKIKAAVLE 783 (784)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~t-v~~li~~tv~~Ik~Al~~ 783 (784)
.++|.+|.-+|+=.... +..--|.. +....-.++++++.|+.+
T Consensus 159 ----------------------~~~t~vt~~~~~Dp~G~----IP~~lvN~~~~~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 159 ----------------------PKGCTLTYVTQNDPKGS----LPKWVVNKATTKLAPKVMKKLHKAALK 202 (222)
T ss_pred ----------------------CCCEEEEEEEecCCCCC----cCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 14677777766655433 22222222 233344678888887754
No 58
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.38 E-value=0.0017 Score=68.67 Aligned_cols=119 Identities=11% Similarity=0.104 Sum_probs=84.6
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeec
Q 003954 350 TGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHI 429 (784)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~ 429 (784)
-++|...+.+|++.|.|.+...+=.+ .+...++| ..- +....++|..+..|. -+.+|||.++|+.++..
T Consensus 82 e~~vd~s~~~v~dlL~D~~~R~~WD~----~~~e~evI-~~i-----d~d~~iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~ 150 (235)
T cd08873 82 ELKVQTCASDAFDLLSDPFKRPEWDP----HGRSCEEV-KRV-----GEDDGIYHTTMPSLT-SEKPNDFVLLVSRRKPA 150 (235)
T ss_pred EEEecCCHHHHHHHHhCcchhhhhhh----cccEEEEE-EEe-----CCCcEEEEEEcCCCC-CCCCceEEEEEEEEecc
Confidence 33488899999999999864333322 25555555 211 123356776655555 48899999999999844
Q ss_pred -C-CeEEEEEEecc-CCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeee
Q 003954 430 -E-GVWAVVDVSID-TNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAE 481 (784)
Q Consensus 430 -~-g~w~VvDvS~d-~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e 481 (784)
+ +..+|.=.|+. ...+ ....++|.+.+=.|++|++.++|.|+||.+-|++
T Consensus 151 ~~~~~~~I~~~SV~h~~~P--p~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 151 TDGDPYKVAFRSVTLPRVP--QTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred CCCCeEEEEEeeeecccCC--CCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 4 34777777765 2222 2237899999999999999999999999999986
No 59
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.26 E-value=0.00017 Score=82.49 Aligned_cols=58 Identities=28% Similarity=0.359 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHH
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQM 149 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~ 149 (784)
.+.||.|..||..|.+.|..+|+++++|+....+.|+.+|+|..+-|..||=|-|.|.
T Consensus 418 ~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 418 LQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred ccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 3457779999999999999999999999999999999999999999999999988765
No 60
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=96.86 E-value=0.097 Score=54.33 Aligned_cols=175 Identities=17% Similarity=0.242 Sum_probs=107.6
Q ss_pred CCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecc-cChHHHHHhhhccccchhhhh-hcCCCccceee
Q 003954 559 SSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLP-MTRQRLFDFMRDERMRSEWDI-LSNGGPLQEMV 636 (784)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~-ls~g~~~qe~~ 636 (784)
....+|.... ..++|.|.++|..+ |.|.-++. .|+=++ +|.+.|+|.|+| |..||. |.... .|.
T Consensus 24 ek~kgW~~~~---~~~~vev~~kk~~d--~~~l~lwk---~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~---~Ie 89 (205)
T cd08907 24 ERFKGWHSAP---GPDNTELACKKVGD--GHPLRLWK---VSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQ---VIE 89 (205)
T ss_pred hccCCceeec---CCCCcEEEEEeCCC--CCceEEEE---EEEEecCCCHHHHHHHhhc---hhhhhHHHHhhh---hhe
Confidence 4556898775 36889999999754 55644554 455568 999999999999 999995 22222 222
Q ss_pred ecccCCCCCCeEEEEEcccCCCCCCceEEEEeecc-C-CCccEEEEee-cCcccccccccCCCCCCccccCCccEEcCCC
Q 003954 637 HIAKGQAPGNCASLLRAGAMNVNDSGMLILQETWN-D-SSGSLVVYAP-VDVPSMSMVMNGGDSTCVALLPSGFAILPDG 713 (784)
Q Consensus 637 ~ia~g~~~gn~vsll~~~~~~~~~~~~liLQes~t-d-~sgs~vVyAP-vD~~~m~~vm~G~D~~~v~lLPSGF~I~Pdg 713 (784)
.| ++.|.|-=.-.+...+-.+.-|++|-++- | ..|++++.+- |+=+.- -+.|| --...|=+||-|=|.|
T Consensus 90 ~L----d~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~--pp~~g--VRa~~l~sgYlIep~g 161 (205)
T cd08907 90 AL----ENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNP--QLEAG--VRAVLLTSQYLIEPCG 161 (205)
T ss_pred ee----cCCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcC--CCCCC--eEEEEEeccEEEEECC
Confidence 23 44455544444444444455577777774 4 5677666541 222111 11222 1223455677776632
Q ss_pred CCCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHHHH-hhHhHHHHHHHHHHhhc
Q 003954 714 YFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVETV-NNLISCTIQKIKAAVLE 783 (784)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~tv-~~li~~tv~~Ik~Al~~ 783 (784)
.|+|.||=-.|+=.... .++=+..| ..|++.-+.||++++.+
T Consensus 162 -----------------------~g~s~ltyi~rvD~rG~-----~P~Wynk~~g~~~a~~l~~ir~sF~~ 204 (205)
T cd08907 162 -----------------------MGRSRLTHICRADLRGR-----SPDWYNKVFGHLCAMEVARIRDSFPT 204 (205)
T ss_pred -----------------------CCCeEEEEEEEeCCCCC-----CcHHHHHhHHHHHHHHHHHHHhhccC
Confidence 25788886667666655 55556555 56777789999988765
No 61
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.86 E-value=0.0012 Score=81.87 Aligned_cols=62 Identities=21% Similarity=0.394 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
.+|++|++++..|++.+..+|....||...+.+.|...++++.+.|++||||-|+|.|+...
T Consensus 902 ~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 902 GRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 46888999999999999999999999999999999999999999999999999999997655
No 62
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.77 E-value=0.016 Score=61.49 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=81.4
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccc--cccceeeEEEEee
Q 003954 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSP--LVPVRQAKFLRFC 425 (784)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~Sp--Lvp~Re~~fLRyc 425 (784)
|.-++|...+..|.+.|.|.+...+=.+.+. .++.|+-+ + . + . .+|... -+.+ -+..|||-.++..
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~-e~~vIe~i-d---~---~-~--~vY~v~-~~p~~~pvs~RDfV~~~s~ 151 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKHYR-SCELVQQV-D---E---D-D--AIYHVT-SPSLSGHGKPQDFVILASR 151 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhhcc-EEEEEEec-C---C---C-c--EEEEEe-cCCCCCCCCCCeEEEEEEE
Confidence 3336889999999999999875443333332 25555555 2 1 1 1 123322 1222 5889999999888
Q ss_pred eeec-CC-eEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeee
Q 003954 426 KQHI-EG-VWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAE 481 (784)
Q Consensus 426 kq~~-~g-~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e 481 (784)
.+.+ +| .++|+=.|+..-. .+....++|.+.+..|++|++.++|.|+||++-|++
T Consensus 152 ~~~~~~g~~yii~~~sv~~P~-~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d 208 (240)
T cd08913 152 RKPCDNGDPYVIALRSVTLPT-HPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT 208 (240)
T ss_pred EeccCCCccEEEEEEEeecCC-CCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC
Confidence 6654 34 4666665554322 233347899999999999999999999999999998
No 63
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.70 E-value=0.013 Score=61.97 Aligned_cols=129 Identities=12% Similarity=0.098 Sum_probs=88.2
Q ss_pred eeecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeeccc-ccccceeeEEEEe
Q 003954 346 ASRETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLS-PLVPVRQAKFLRF 424 (784)
Q Consensus 346 AsR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~S-pLvp~Re~~fLRy 424 (784)
+=|.-..|...+.+|.+.|.|.+...+=.+. +...++| ..-.. +. . +|...-.|- |+ ..|||-++|-
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~----~~e~~vI-~qld~---~~--~-vY~~~~pPw~Pv-k~RD~V~~~s 146 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH----FLSCEVI-DWVSE---DD--Q-IYHITCPIVNND-KPKDLVVLVS 146 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHh----hceEEEE-EEeCC---Cc--C-EEEEecCCCCCC-CCceEEEEEE
Confidence 3444457889999999999998744433222 4444454 21111 11 1 466553443 44 8999999877
Q ss_pred eeeec-CCe-EEEEEEeccC-CCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccc
Q 003954 425 CKQHI-EGV-WAVVDVSIDT-NREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHL 490 (784)
Q Consensus 425 ckq~~-~g~-w~VvDvS~d~-~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 490 (784)
-.+.. +|. ++|.=.|+.. ..+. ...++|.+.+=+|++|++.++|.|+||.+-|++ +..+|..
T Consensus 147 ~~~~~~dg~~~~I~~~SVp~~~~Pp--~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~ 211 (236)
T cd08914 147 RRKPLKDGNTYVVAVKSVILPSVPP--SPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYF 211 (236)
T ss_pred EEecCCCCCEEEEEEeecccccCCC--CCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--Cccchhe
Confidence 76656 885 8888888775 3322 236899999899999999999999999999995 4555443
No 64
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.56 E-value=0.2 Score=51.47 Aligned_cols=173 Identities=13% Similarity=0.154 Sum_probs=101.2
Q ss_pred CCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhcCCCccceeeecc
Q 003954 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHIA 639 (784)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~ia 639 (784)
..++|.... ..++|+|.+|+..+ +.| +..-+...-++.+|..||+.|.| .|.+||...- ..+.+-.|
T Consensus 17 ~~~~W~~~~---~~~gi~I~~k~~~~--~~~---l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~~--~~~vie~i- 83 (197)
T cd08869 17 KSKGWVSVS---SSDHVELAFKKVDD--GHP---LRLWRASTEVEAPPEEVLQRILR--ERHLWDDDLL--QWKVVETL- 83 (197)
T ss_pred ccCCceEEe---cCCcEEEEEEeCCC--CCc---EEEEEEEEEeCCCHHHHHHHHHH--HHhccchhhh--eEEEEEEe-
Confidence 467999665 35799999999632 222 44568888899999999999988 6899996432 12333333
Q ss_pred cCCCCCCeEEEEEcccCCC-CCCceEEEEeeccC-CCccEEEEe-ecCcc-cccccccCCCCCC--ccccCCccEEcCCC
Q 003954 640 KGQAPGNCASLLRAGAMNV-NDSGMLILQETWND-SSGSLVVYA-PVDVP-SMSMVMNGGDSTC--VALLPSGFAILPDG 713 (784)
Q Consensus 640 ~g~~~gn~vsll~~~~~~~-~~~~~liLQes~td-~sgs~vVyA-PvD~~-~m~~vm~G~D~~~--v~lLPSGF~I~Pdg 713 (784)
+..+.|--...+..-+ ..+++.+++-...| ..|+++|.. -|+-+ .+- +.+ +..+++||.|-|.+
T Consensus 84 ---d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p-------~g~VR~~~~~~g~~i~p~~ 153 (197)
T cd08869 84 ---DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVP-------LGGVRAVVLASRYLIEPCG 153 (197)
T ss_pred ---cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCC-------CCCEEEEEEeeeEEEEECC
Confidence 2334443333332222 33455555443333 455565433 23221 100 122 35788889888842
Q ss_pred CCCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHHHHhhHhHHHHHHHHHHhh
Q 003954 714 YFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVETVNNLISCTIQKIKAAVL 782 (784)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~tv~~li~~tv~~Ik~Al~ 782 (784)
. ++|.+|--.|+=.... +..=-+-..+++++..|++|++.+.
T Consensus 154 ~-----------------------~~t~vty~~~~Dp~G~----iP~wl~N~~~~~~~~~~~~l~~~~~ 195 (197)
T cd08869 154 S-----------------------GKSRVTHICRVDLRGR----SPEWYNKVYGHLCARELLRIRDSFR 195 (197)
T ss_pred C-----------------------CCeEEEEEEEECCCCC----CCceeecchHhHHHHHHHHHHhhcc
Confidence 1 3677776656544322 2212233466888899999998764
No 65
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=96.47 E-value=0.17 Score=52.54 Aligned_cols=174 Identities=16% Similarity=0.194 Sum_probs=107.9
Q ss_pred CCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhcCCCccceeeeccc
Q 003954 561 VRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHIAK 640 (784)
Q Consensus 561 ~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~ia~ 640 (784)
.++|.... ..+++.|.++++.+..|. -.++.--+|.+|+.||+||.|..+|.+||-.... .+.+-+|
T Consensus 21 ~~gWk~~k---~~~~~~v~~k~~~~~~gk------l~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~--~~iie~I-- 87 (204)
T cd08904 21 TSGWKVVK---TSKKITVSWKPSRKYHGN------LYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQV--YKMLQRI-- 87 (204)
T ss_pred ccCCeEEe---cCCceEEEEEEcCCCCce------EEEEEEEecCCHHHHHHHHhccchhhhhcccccc--eeeEEEe--
Confidence 48999775 348899999987654442 3566777899999999999999999999974433 3444444
Q ss_pred CCCCCCeEEEEEcccC--C-CCCCceEEEEeecc-CCCccEEE-EeecCcccccccccCCCCCCc--cccCCccEEcCCC
Q 003954 641 GQAPGNCASLLRAGAM--N-VNDSGMLILQETWN-DSSGSLVV-YAPVDVPSMSMVMNGGDSTCV--ALLPSGFAILPDG 713 (784)
Q Consensus 641 g~~~gn~vsll~~~~~--~-~~~~~~liLQes~t-d~sgs~vV-yAPvD~~~m~~vm~G~D~~~v--~lLPSGF~I~Pdg 713 (784)
+...+|...+..+. + -+.++.+.+|-..- +. +.+++ +.-|+-+.+- .-+.+| -..|+||.|.|-.
T Consensus 88 --d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~-~~~ii~~~sv~Hp~~P-----p~~g~VRa~n~~~G~~i~pl~ 159 (204)
T cd08904 88 --DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEG-NMNIVSSVSVEYPQCP-----PSSNYIRGYNHPCGYVCSPLP 159 (204)
T ss_pred --CCCcEEEEEecccccCCcccCceEEEEEEEEEeCC-CEEEEEEEecccCCCC-----CCCCcEEEeeeccEEEEEECC
Confidence 66667777665421 1 23457777765322 33 33333 4444444321 113343 3788999999931
Q ss_pred CCCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHHH--HhhHhHHHHHHHHHHh
Q 003954 714 YFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVET--VNNLISCTIQKIKAAV 781 (784)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~t--v~~li~~tv~~Ik~Al 781 (784)
. ..++|.||.-+|+=.... |..--|.. -.+++ ..+...|.||
T Consensus 160 ~---------------------~p~~t~l~~~~~~DlkG~----lP~~vv~~~~~~~~~-~f~~~~~~~~ 203 (204)
T cd08904 160 E---------------------NPAYSKLVMFVQPELRGN----LSRSVIEKTMPTNLV-NLILDAKDGI 203 (204)
T ss_pred C---------------------CCCceEEEEEEEeCCCCC----CCHHHHHHHhHHHHH-HHHHHHHHhc
Confidence 1 124789999888554433 33333333 23344 4777777776
No 66
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.28 E-value=0.056 Score=56.18 Aligned_cols=133 Identities=20% Similarity=0.183 Sum_probs=72.4
Q ss_pred CCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhcCCCccceeeec
Q 003954 559 SSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHI 638 (784)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~i 638 (784)
-...+|. +. ...++|+|.++.. +|...|. ++ .+ -+++|++.|+++|.|...|.+||...... +|
T Consensus 19 ~~~~gW~-l~--~~~~gI~Vy~k~~---~~~~~~~-~g-e~--~v~as~~~v~~ll~D~~~r~~Wd~~~~~~------~v 82 (205)
T cd08874 19 QATAGWS-YQ--CLEKDVVIYYKVF---NGTYHGF-LG-AG--VIKAPLATVWKAVKDPRTRFLYDTMIKTA------RI 82 (205)
T ss_pred hccCCcE-EE--ecCCCEEEEEecC---CCCcceE-EE-EE--EEcCCHHHHHHHHhCcchhhhhHHhhhhe------ee
Confidence 4567995 54 2468999999864 3344443 33 33 34999999999999999999999754322 22
Q ss_pred ccCCCCCCeEEEEEcccCCC-----CCCceEEEEeeccCCCccEEE-EeecCcccccccccCCCCCCccccCCccEEcCC
Q 003954 639 AKGQAPGNCASLLRAGAMNV-----NDSGMLILQETWNDSSGSLVV-YAPVDVPSMSMVMNGGDSTCVALLPSGFAILPD 712 (784)
Q Consensus 639 a~g~~~gn~vsll~~~~~~~-----~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~D~~~v~lLPSGF~I~Pd 712 (784)
.+-.+... .|++.....+ ..+++.+|+- +.+..+..+| ---|+-+.+-. .+.+==-+..+++|+.|.|.
T Consensus 83 l~~~~~d~--~i~y~~~~~Pwp~~~~~RDfV~l~~-~~~~~~~~vi~~~SV~~~~~P~--~~~~~VR~~~~~~gw~i~P~ 157 (205)
T cd08874 83 HKTFTEDI--CLVYLVHETPLCLLKQPRDFCCLQV-EAKEGELSVVACQSVYDKSMPE--PGRSLVRGEILPSAWILEPV 157 (205)
T ss_pred eeecCCCe--EEEEEEecCCCCCCCCCCeEEEEEE-EEECCCcEEEEEEecccccCCC--CCCCeEEeeeEeeeEEEEEC
Confidence 22223333 3444321111 4467777774 5444333333 11122111000 00000124578888888883
No 67
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.83 E-value=0.73 Score=46.44 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=47.1
Q ss_pred CCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhc
Q 003954 559 SSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILS 627 (784)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls 627 (784)
|++.+|.... ..++|+|..++..+ +.+..-.++..++.||+.||+++.|..+|.+||--.
T Consensus 14 ~~~~~W~~~~---~~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~ 73 (195)
T cd08876 14 APDGDWQLVK---DKDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNC 73 (195)
T ss_pred CCCCCCEEEe---cCCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhc
Confidence 4555599776 35799999988632 224566778889999999999999999999999643
No 68
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=95.62 E-value=0.86 Score=46.94 Aligned_cols=131 Identities=15% Similarity=0.079 Sum_probs=74.6
Q ss_pred CCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhh-hccccchhhhhhcCCCccceeeecc
Q 003954 561 VRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFM-RDERMRSEWDILSNGGPLQEMVHIA 639 (784)
Q Consensus 561 ~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FL-rd~~~R~eWd~ls~g~~~qe~~~ia 639 (784)
..+|.... . ..++|.|.+|... | .|-+ .++...+++||..||++| .|...|.+||..+.. .+.+-.+
T Consensus 23 ~~~W~l~~-~-~~~~i~i~~r~~~---~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~--~~~i~~~- 90 (208)
T cd08868 23 DPGWKLEK-N-TTWGDVVYSRNVP---G--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE--CKIIQVI- 90 (208)
T ss_pred CCCceEEE-e-cCCCCEEEEEEcC---C--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc--eEEEEEe-
Confidence 44899775 2 2238999999853 3 2323 555567799999999865 588999999976543 2344444
Q ss_pred cCCCCCCeEEEEEcccC--C-CCCCceEEEEeeccCCCccEEE-EeecCcccccccccCCCCCC--ccccCCccEEcCC
Q 003954 640 KGQAPGNCASLLRAGAM--N-VNDSGMLILQETWNDSSGSLVV-YAPVDVPSMSMVMNGGDSTC--VALLPSGFAILPD 712 (784)
Q Consensus 640 ~g~~~gn~vsll~~~~~--~-~~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~D~~~--v~lLPSGF~I~Pd 712 (784)
+....|--...... . -..++.+.++-..-+. +.++| ...|+-+.+ ...+.+ +..+++||.|-|.
T Consensus 91 ---d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~-----P~~~g~VR~~~~~~~~~i~p~ 160 (208)
T cd08868 91 ---DDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAM-----PPTKNYVRGENGPGCWILRPL 160 (208)
T ss_pred ---cCCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCCCC-----CCCCCeEEEeccccEEEEEEC
Confidence 23334433222211 1 2345666666533333 55544 333443321 111222 4578889988885
No 69
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=95.48 E-value=1.1 Score=44.25 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=90.4
Q ss_pred CCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhcCCCccceeeecccC
Q 003954 562 RKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHIAKG 641 (784)
Q Consensus 562 ~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~ia~g 641 (784)
++|..+. . .++|+|..++..+ . .+...++..-++.|+..|+++|.|...|.+||...... ..+..+.
T Consensus 15 ~~W~~~~-~--~~~v~vy~~~~~~-~-----~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~--~vl~~~~-- 81 (193)
T cd00177 15 EGWKLVK-E--KDGVKIYTKPYED-S-----GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEF--EVIEEID-- 81 (193)
T ss_pred CCeEEEE-E--CCcEEEEEecCCC-C-----CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEE--EEEEEeC--
Confidence 5899886 2 4589998887632 1 23466677778999999999999999999999643322 2333332
Q ss_pred CCCCCeEEEEEcccCC-CCCCceEEEEeeccCC-CccEEEEeecCcccccccccCCCCCC--ccccCCccEEcCCCCCCC
Q 003954 642 QAPGNCASLLRAGAMN-VNDSGMLILQETWNDS-SGSLVVYAPVDVPSMSMVMNGGDSTC--VALLPSGFAILPDGYFGH 717 (784)
Q Consensus 642 ~~~gn~vsll~~~~~~-~~~~~~liLQes~td~-sgs~vVyAPvD~~~m~~vm~G~D~~~--v~lLPSGF~I~Pdg~~~~ 717 (784)
.+..|........- ....+++++.....+. -.-+++...||.+.. ..-+.. ..++++||.|-|.+
T Consensus 82 --~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~-----p~~~~~vR~~~~~~~~~i~~~~---- 150 (193)
T cd00177 82 --EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSH-----PKEKGYVRAEIKLSGWIIEPLD---- 150 (193)
T ss_pred --CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCC-----CCCCCcEEEEEEccEEEEEECC----
Confidence 22344444433222 3446778887655555 335666667776521 111123 33668888887741
Q ss_pred CCccCCCCCccccCCCCCCCCCeeeeEeeeeeec
Q 003954 718 GGLINSNGTMVKTEGSSNESGGCLLTVGFQILVN 751 (784)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~ 751 (784)
.++|.+|.-+|+=..
T Consensus 151 -------------------~~~~~vt~~~~~D~~ 165 (193)
T cd00177 151 -------------------PGKTKVTYVLQVDPK 165 (193)
T ss_pred -------------------CCCEEEEEEEeeCCC
Confidence 147778877776544
No 70
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=95.34 E-value=1 Score=45.71 Aligned_cols=134 Identities=22% Similarity=0.220 Sum_probs=80.2
Q ss_pred CCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHH-HHHhhhccccchhhhhhcCCCccceeeecc
Q 003954 561 VRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQR-LFDFMRDERMRSEWDILSNGGPLQEMVHIA 639 (784)
Q Consensus 561 ~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~-vf~FLrd~~~R~eWd~ls~g~~~qe~~~ia 639 (784)
.++|.... + +.+++.+..+.. +| ...+-..+....++.++.. +.++|.|.+.|.+||...-. ++.+-.+.
T Consensus 18 ~~~W~~~~-~-~~~~~~~~~~~~---~~--~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~--~~~ie~~~ 88 (206)
T smart00234 18 EPGWVLSS-E-NENGDEVRSILS---PG--RSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK--AETLEVID 88 (206)
T ss_pred CCccEEcc-c-cCCcceEEEEcc---CC--CCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc--EEEEEEEC
Confidence 46799765 3 234444444443 22 0136688899999988875 66899999999999975532 23344442
Q ss_pred cCCCCCCeEEEEEcccC--CCCCCceEEEEeeccCCCccEEEEe-ecCcccccccccCCCCCCc--cccCCccEEcCC
Q 003954 640 KGQAPGNCASLLRAGAM--NVNDSGMLILQETWNDSSGSLVVYA-PVDVPSMSMVMNGGDSTCV--ALLPSGFAILPD 712 (784)
Q Consensus 640 ~g~~~gn~vsll~~~~~--~~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~D~~~v--~lLPSGF~I~Pd 712 (784)
.++.|-....... --...+.+++.-...|..++++|.. -++-+.. ...+.+| .++++||.|-|.
T Consensus 89 ----~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-----p~~~~~VR~~~~~~~~~i~p~ 157 (206)
T smart00234 89 ----NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-----PPTSGYVRAENLPSGLLIEPL 157 (206)
T ss_pred ----CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-----CCCCCceEEEEeceEEEEEEC
Confidence 2344444332211 1233677777775556677766544 5554431 1123333 589999999994
No 71
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=95.18 E-value=2 Score=44.67 Aligned_cols=130 Identities=12% Similarity=0.098 Sum_probs=77.5
Q ss_pred CCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHH-hhhccccchhhhhhcCCCccceeeecc
Q 003954 561 VRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFD-FMRDERMRSEWDILSNGGPLQEMVHIA 639 (784)
Q Consensus 561 ~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~-FLrd~~~R~eWd~ls~g~~~qe~~~ia 639 (784)
.++|..-. ...++|+|.+++.. +. | .+-+.-+-+++|++.||+ .|.|...|.+||.-.. .++.+.+|
T Consensus 24 ~~~W~l~~--~~~~gi~V~s~~~~---~~--~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~--~~~vi~~~- 91 (209)
T cd08906 24 EENWKFEK--NNDNGDTVYTLEVP---FH--G--KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVS--ACQVLQRV- 91 (209)
T ss_pred ccCCEEEE--ecCCCCEEEEeccC---CC--C--cEEEEEEEEcCCHHHHHHHHHhChhhccccCccch--hhhheeec-
Confidence 35898543 12478999997652 21 2 344777778999999985 7899999999995331 23334444
Q ss_pred cCCCCCCeEEEEEcccC---C-CCCCceEEEEeeccCCCccEEEEeecCcccccccccCCCCCCc--cccCCccEEcC
Q 003954 640 KGQAPGNCASLLRAGAM---N-VNDSGMLILQETWNDSSGSLVVYAPVDVPSMSMVMNGGDSTCV--ALLPSGFAILP 711 (784)
Q Consensus 640 ~g~~~gn~vsll~~~~~---~-~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~D~~~v--~lLPSGF~I~P 711 (784)
++.+.|. ..+... + -..+++.+++-.+-+..+..++...++.+.+ ...+.+| ...++||.|.|
T Consensus 92 ---~~~~~i~-Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~-----P~~~~~VR~~~~~~G~~i~~ 160 (209)
T cd08906 92 ---DDNTLVS-YDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHK-----PPLSKYVRGENGPGGFVVLK 160 (209)
T ss_pred ---cCCcEEE-EEEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCC-----CCCCCeEEEeeeccEEEEEE
Confidence 3334443 232211 1 2456777776644455554445444444432 2224444 35799999998
No 72
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.11 E-value=1.1 Score=46.36 Aligned_cols=117 Identities=10% Similarity=0.146 Sum_probs=80.5
Q ss_pred HHHHHhhhccCCCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhc
Q 003954 548 MTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILS 627 (784)
Q Consensus 548 M~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls 627 (784)
++..|...+.. .++|.... ..++|+|..|...+ +.+++.+.-..++.|+..++++|+|-..+.+|+-.+
T Consensus 10 ~~~~~~~~l~~--~~~W~~~~---~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQK---ESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHhcccC--CCCcEEec---cCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 34556666655 67899775 35799999999632 348899999999999999999999999999999753
Q ss_pred CCCccceeeecccCCCCCCeEEEEEcccCC-CCCCceEEEEeecc--CCCccEEEEe
Q 003954 628 NGGPLQEMVHIAKGQAPGNCASLLRAGAMN-VNDSGMLILQETWN--DSSGSLVVYA 681 (784)
Q Consensus 628 ~g~~~qe~~~ia~g~~~gn~vsll~~~~~~-~~~~~~liLQes~t--d~sgs~vVyA 681 (784)
.. .+.+..+ +..+.|..+++...= -..+++++....+. |..|+++|+.
T Consensus 79 ~~--~~~l~~~----~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~ 129 (215)
T cd08877 79 IR--SKKVKQL----GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILL 129 (215)
T ss_pred ee--eEEEeec----CCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEE
Confidence 22 2333333 445677777765321 23356665544443 3677776655
No 73
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.08 E-value=1.3 Score=45.85 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=98.1
Q ss_pred CCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhcc--ccchhhhhhcCCCccceeee
Q 003954 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDE--RMRSEWDILSNGGPLQEMVH 637 (784)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~--~~R~eWd~ls~g~~~qe~~~ 637 (784)
..++|.... ..++|+|.+|++...+|. + .++-.-+|++++.||++|.|. ..|.+||..+... +.+-+
T Consensus 20 ~~~~W~~~~---~~~~i~v~~~~~~~~~~~----~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~--~vle~ 88 (208)
T cd08903 20 DESGWKTCR---RTNEVAVSWRPSAEFAGN----L--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDF--EVVEA 88 (208)
T ss_pred cccCCEEEE---cCCCEEEEeeecCCCCCc----E--EEEEEEecCCHHHHHHHHHhccchhhhhhhhccccE--EEEEE
Confidence 567899776 247999999987554543 2 456666799999999999864 4789999765432 34444
Q ss_pred cccCCCCCCeEEEEEcccC--C-CCCCceEEEEeeccCCCccEEEEe-ecCcccccccccCCCCCCcc--ccCCccEEcC
Q 003954 638 IAKGQAPGNCASLLRAGAM--N-VNDSGMLILQETWNDSSGSLVVYA-PVDVPSMSMVMNGGDSTCVA--LLPSGFAILP 711 (784)
Q Consensus 638 ia~g~~~gn~vsll~~~~~--~-~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~D~~~v~--lLPSGF~I~P 711 (784)
| +....|..++.... + -..+++++++-.-.+..|.+++.. -++-+.+ ...+..|- .-|+|+.+.|
T Consensus 89 i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~-----P~~~~~VR~~~~~~g~~~~~ 159 (208)
T cd08903 89 I----SDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLC-----PPQAGFVRGFNHPCGCFCEP 159 (208)
T ss_pred e----cCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCC-----CCCCCeEEEeeeccEEEEEE
Confidence 4 23334433322111 1 234566666653334556555543 2222111 11123332 3456666655
Q ss_pred CCCCCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHHH-HhhHhHHHHHHHHHHhhc
Q 003954 712 DGYFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVET-VNNLISCTIQKIKAAVLE 783 (784)
Q Consensus 712 dg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~t-v~~li~~tv~~Ik~Al~~ 783 (784)
-. ...++|.+|.-+|+=-. -.|...-|.. +...+..+.+.++.+|++
T Consensus 160 ~~---------------------~~~~~t~v~~~~~~Dpk----G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 160 VP---------------------GEPDKTQLVSFFQTDLS----GYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred CC---------------------CCCCceEEEEEEEeccC----CCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 10 01135666655554333 3344333333 334444588888888865
No 74
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=94.95 E-value=1.4 Score=45.99 Aligned_cols=173 Identities=18% Similarity=0.233 Sum_probs=98.1
Q ss_pred CceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhcCCCccceeeecccCC
Q 003954 563 KWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHIAKGQ 642 (784)
Q Consensus 563 ~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~ia~g~ 642 (784)
+|..+. ..+.+.+..+|. .+|.| +.--+.++-+|.+|..|...|-|+ |.+||.-.- .++.+..|
T Consensus 28 ~w~~~~---~~~~~el~~~k~--~~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~--e~~vIe~l---- 91 (204)
T cd08908 28 GWVSYS---TSEQAELSYKKV--SEGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLL--DSKVIEIL---- 91 (204)
T ss_pred CCcccC---CCCcEEEEEecc--CCCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhh--heEeeEec----
Confidence 787775 357899999986 34555 667788888998888888777775 999996431 12333333
Q ss_pred CCCCeEEEEEcccCCC-CCCceEEEEeeccC-CCccEEEEee-cCcccccccccCCCCCCccccCCccEEcCCCCCCCCC
Q 003954 643 APGNCASLLRAGAMNV-NDSGMLILQETWND-SSGSLVVYAP-VDVPSMSMVMNGGDSTCVALLPSGFAILPDGYFGHGG 719 (784)
Q Consensus 643 ~~gn~vsll~~~~~~~-~~~~~liLQes~td-~sgs~vVyAP-vD~~~m~~vm~G~D~~~v~lLPSGF~I~Pdg~~~~~~ 719 (784)
++.+.|-=..++..-+ ...++.+++-..+| .-|++++... |+-+.+- .++ --+..+-+|+.|-|.
T Consensus 92 d~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P--~~~---VR~~~~~~~w~i~P~------- 159 (204)
T cd08908 92 DSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAP--VAG---VRVNVLLSRYLIEPC------- 159 (204)
T ss_pred CCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCC--cCc---eEEEEEeeEEEEEEC-------
Confidence 3334333333332222 23455555443333 4666666664 4433211 000 112223344444442
Q ss_pred ccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHHHHhhHhHHHHHHHHHHhhc
Q 003954 720 LINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVETVNNLISCTIQKIKAAVLE 783 (784)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~tv~~li~~tv~~Ik~Al~~ 783 (784)
.+++|-||--.|+=... .+..=-+-....|++.-+.||++++.+
T Consensus 160 ----------------g~g~t~vtyi~~~DPgG----~iP~W~~N~~g~~~~~~~~~~r~sf~~ 203 (204)
T cd08908 160 ----------------GSGKSKLTYMCRIDLRG----HMPEWYTKSFGHLCAAEVVKIRDSFSN 203 (204)
T ss_pred ----------------CCCcEEEEEEEEeCCCC----CCcHHHHhhHHHHHHHHHHHHHhhccC
Confidence 12578787655543332 233344455788999999999998765
No 75
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=94.88 E-value=3.7 Score=42.16 Aligned_cols=145 Identities=14% Similarity=0.155 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhhhccCCCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhc--ccc
Q 003954 542 LKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRD--ERM 619 (784)
Q Consensus 542 l~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd--~~~ 619 (784)
=++.|.|..-|... ++|.... ..++|+|.+++..+.. + -..++..-+|.+|+.||++|.| +..
T Consensus 8 ~~~~~~~~~~~~~~------~~W~~~~---~~~~i~v~~~~~~~~~----~--~~~k~~~~i~~~~~~v~~~l~d~~~~~ 72 (206)
T cd08867 8 EKLANEALQYINDT------DGWKVLK---TVKNITVSWKPSTEFT----G--HLYRAEGIVDALPEKVIDVIIPPCGGL 72 (206)
T ss_pred HHHHHHHHHHhcCc------CCcEEEE---cCCCcEEEEecCCCCC----C--EEEEEEEEEcCCHHHHHHHHHhcCccc
Confidence 34555555555422 7899875 3478999998643211 1 2346777789999999999999 899
Q ss_pred chhhhhhcCCCccceeeecccCCCCCCeEEEEEcccC--C-CCCCceEEEEeeccCCCccEEEEe-ecCcccccccccCC
Q 003954 620 RSEWDILSNGGPLQEMVHIAKGQAPGNCASLLRAGAM--N-VNDSGMLILQETWNDSSGSLVVYA-PVDVPSMSMVMNGG 695 (784)
Q Consensus 620 R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsll~~~~~--~-~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~ 695 (784)
|.+||.... ..+.+.+| ++.+.|..+..... . -..++.+.+|-......|++++.. -|+-+.+ ..
T Consensus 73 r~~Wd~~~~--~~~~le~i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~-----p~ 141 (206)
T cd08867 73 RLKWDKSLK--HYEVLEKI----SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPER-----PP 141 (206)
T ss_pred ccccccccc--ceEEEEEe----CCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCC-----CC
Confidence 999995433 23555555 33445443332111 1 233566666643222334554442 2333321 11
Q ss_pred CCCCc--cccCCccEEcCC
Q 003954 696 DSTCV--ALLPSGFAILPD 712 (784)
Q Consensus 696 D~~~v--~lLPSGF~I~Pd 712 (784)
-+.+| ..+++||.|-|.
T Consensus 142 ~~~~VR~~~~~~g~~i~p~ 160 (206)
T cd08867 142 TPGFVRGYNHPCGYFCSPL 160 (206)
T ss_pred CCCcEEEEeecCEEEEEEC
Confidence 13333 457888888873
No 76
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=94.59 E-value=0.045 Score=60.73 Aligned_cols=59 Identities=20% Similarity=0.419 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 93 PRKKKYHRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
.++|++..+.......|+....+ .+||+...+..|++++||+..||..||-|.|-+..+
T Consensus 238 ~~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 238 SKWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCC
Confidence 35566678999999999977433 589999999999999999999999999999877543
No 77
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=93.91 E-value=3.1 Score=43.03 Aligned_cols=107 Identities=14% Similarity=0.211 Sum_probs=61.4
Q ss_pred CCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeec-ccChHHHHHhhhccccchhhhhhcCCCccceeeec
Q 003954 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWL-PMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHI 638 (784)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wL-pv~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~i 638 (784)
-..+|.... ..++|+|-.|... |. |+. --++...+ .+|++.+|++|.|...|.+||... +|.--|
T Consensus 19 ~~~~W~l~~---~~~~i~Vy~r~~~---~s--~~~-~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-----~~~~~l 84 (207)
T cd08911 19 EPDGWEPFI---EKKDMLVWRREHP---GT--GLY-EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-----VELEVV 84 (207)
T ss_pred cCCCcEEEE---EcCceEEEEeccC---CC--CcE-EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-----eeEEEE
Confidence 345699876 2578999888763 21 222 45554545 699999999999999999999643 343333
Q ss_pred ccCCCCCCeEEEEEcccC-CCCCCceEEEEeeccCCC-ccEEEE
Q 003954 639 AKGQAPGNCASLLRAGAM-NVNDSGMLILQETWNDSS-GSLVVY 680 (784)
Q Consensus 639 a~g~~~gn~vsll~~~~~-~~~~~~~liLQes~td~s-gs~vVy 680 (784)
.+..+.++.|--.+.... --..++..+-+-...|.. +.++|.
T Consensus 85 e~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~ 128 (207)
T cd08911 85 DEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIV 128 (207)
T ss_pred EccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEE
Confidence 332333444433333321 123345444443334543 333443
No 78
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=93.41 E-value=3.1 Score=42.07 Aligned_cols=193 Identities=16% Similarity=0.198 Sum_probs=108.1
Q ss_pred HHHHHHHHHhhhccCCCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhh
Q 003954 544 LAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEW 623 (784)
Q Consensus 544 La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eW 623 (784)
|+.+....|..- .....++|.... +....+ +.+++... +.+ ..+...++..-++.++..+|..|.|... +|
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~W~~~~-~~~~~~--~~~~~~~~--~~~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~W 72 (206)
T PF01852_consen 2 LAEELMQEELAL-AQEDEDGWKLYK-DKKNGD--VYYKKVSP--SDS-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QW 72 (206)
T ss_dssp HHHHHHHHHHHH-HHHTCTTCEEEE-EETTTC--EEEEEEEC--SSS-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HH
T ss_pred HHHHHHHHHHHH-hhcCCCCCeEeE-ccCCCe--EEEEEeCc--ccc-ccceEEEEEEEEcCChHHHHHHHHhhHh--hc
Confidence 555566666633 356677999886 322333 34444321 111 2356788889999888877777777444 99
Q ss_pred hhhcCCCccceeeecccCCCCCCeEEEEEcccCC---CCCCceEEEEeeccCCCccEEEE-eecCcccccccccCCCCCC
Q 003954 624 DILSNGGPLQEMVHIAKGQAPGNCASLLRAGAMN---VNDSGMLILQETWNDSSGSLVVY-APVDVPSMSMVMNGGDSTC 699 (784)
Q Consensus 624 d~ls~g~~~qe~~~ia~g~~~gn~vsll~~~~~~---~~~~~~liLQes~td~sgs~vVy-APvD~~~m~~vm~G~D~~~ 699 (784)
|.... .++.+-.+ +++..|.....+..- -..++.++++-...+.-+.++|. ..||-+..... .+..
T Consensus 73 d~~~~--~~~~le~~----~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~----~~~~ 142 (206)
T PF01852_consen 73 DKMCV--EAEVLEQI----DEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN----SKGY 142 (206)
T ss_dssp STTEE--EEEEEEEE----ETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-----TTS
T ss_pred ccchh--hheeeeec----CCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc----ccCc
Confidence 97553 23333333 233555555444322 22256677766444566665554 57776663322 2334
Q ss_pred c--cccCCccEEcCCCCCCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHHH--HhhHhHHHHH
Q 003954 700 V--ALLPSGFAILPDGYFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVET--VNNLISCTIQ 775 (784)
Q Consensus 700 v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~t--v~~li~~tv~ 775 (784)
| -+++|||.|-|.+. +.|.+|.-.|+=.... .+..+.. +.+.+..++.
T Consensus 143 VR~~~~~s~~~i~~~~~-----------------------~~~~vt~~~~~D~~G~-----iP~~~~n~~~~~~~~~~~~ 194 (206)
T PF01852_consen 143 VRAEILISGWVIRPLGD-----------------------GRTRVTYVSQVDPKGW-----IPSWLVNMVVKSQPPNFLK 194 (206)
T ss_dssp EEEEEESEEEEEEEETT-----------------------CEEEEEEEEEEESSSS-----SHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeeeEeEEEEEccC-----------------------CCceEEEEEEECCCCC-----ChHHHHHHHHHHhHHHHHH
Confidence 4 38999999998421 2488887777655443 2222222 3444445666
Q ss_pred HHHHHhhc
Q 003954 776 KIKAAVLE 783 (784)
Q Consensus 776 ~Ik~Al~~ 783 (784)
+.+.+|.+
T Consensus 195 ~~~~~~~~ 202 (206)
T PF01852_consen 195 NLRKALKK 202 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666653
No 79
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=93.22 E-value=1 Score=47.87 Aligned_cols=66 Identities=21% Similarity=0.362 Sum_probs=49.4
Q ss_pred CCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhcCCCccceeeec
Q 003954 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHI 638 (784)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~i 638 (784)
..++|..-. ..++|+|.++.+ ..+++-..=+-+++|++.||++|.|...|.+||. +...++.+..|
T Consensus 53 ~~~~W~l~~---~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVAS---STTSVTLYTLEQ--------DGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred ccCCCEEEE---cCCCEEEEEecC--------CCceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 468998665 468999999873 2355555555589999999999999999999997 33344555555
No 80
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=93.08 E-value=1.1 Score=46.33 Aligned_cols=106 Identities=19% Similarity=0.282 Sum_probs=64.1
Q ss_pred CCceeeecCCCCcc----eEEEEccCCCCCCCCCccEEEEEEeeecc-cChHHHHHhhhccccchhhhhhcCCCccceee
Q 003954 562 RKWDKLCVGNVGED----VRVLTRKNVNDPGEPPGVVLCAATTVWLP-MTRQRLFDFMRDERMRSEWDILSNGGPLQEMV 636 (784)
Q Consensus 562 ~~W~~l~~~~~~~d----vrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~ 636 (784)
++|.... . .++ |+|-.|+.. |. | +.--++...++ +||+.|+++|.|...|.+||... .|.-
T Consensus 22 ~~W~~~~-~--k~~~~~~i~vy~r~~~---~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~ 87 (209)
T cd08870 22 QAWQQVM-D--KSTPDMSYQAWRRKPK---GT--G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-----IEHE 87 (209)
T ss_pred CcceEhh-h--ccCCCceEEEEecccC---CC--C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-----eeEE
Confidence 6899876 3 345 888777652 22 2 33466677786 89999999999999999999643 3433
Q ss_pred ecccCCCCCCeEEEEEcccCC-CCCCceEEEEeeccCCCccEEEEe
Q 003954 637 HIAKGQAPGNCASLLRAGAMN-VNDSGMLILQETWNDSSGSLVVYA 681 (784)
Q Consensus 637 ~ia~g~~~gn~vsll~~~~~~-~~~~~~liLQes~td~sgs~vVyA 681 (784)
-|.+..+.++.|--......- -..++..+....+.|.-+.++|..
T Consensus 88 ~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 88 TLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred EEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 333322324444333332211 233466555555566566665544
No 81
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=93.08 E-value=0.022 Score=47.25 Aligned_cols=41 Identities=27% Similarity=0.521 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchh
Q 003954 106 IQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRR 146 (784)
Q Consensus 106 l~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRR 146 (784)
++.|++.|...+++.......|..+.+|+..||+.||-.|+
T Consensus 10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp -HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 56799999999999999999999999999999999996554
No 82
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=92.66 E-value=7.4 Score=40.70 Aligned_cols=174 Identities=15% Similarity=0.185 Sum_probs=96.0
Q ss_pred CCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhcCCCccceeeecccC
Q 003954 562 RKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHIAKG 641 (784)
Q Consensus 562 ~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~ia~g 641 (784)
.+|..+. ..+++.+..+|.. +|.| +=--++++=+|.+|..|+..+-+ .|.+||.- +++---|.+-
T Consensus 27 k~w~~~~---~~~~~e~~ykK~~--d~~~---lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~-----~~~~~~ie~l 91 (205)
T cd08909 27 KGWISCS---SSDNTELAYKKVG--DGNP---LRLWKVSVEVEAPPSVVLNRVLR--ERHLWDED-----FLQWKVVETL 91 (205)
T ss_pred cCCcccC---CcCCeEEEEecCC--CCCc---eEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhh-----cceeEEEEEe
Confidence 4787765 3578888888864 4444 33445688889777666555544 69999953 2222222222
Q ss_pred CCCCCeEEEEEcccCCCC-CCceEEEEeeccC-CCccEEE-EeecCcccccccccCCCCCCccccCCccEEcCCCCCCCC
Q 003954 642 QAPGNCASLLRAGAMNVN-DSGMLILQETWND-SSGSLVV-YAPVDVPSMSMVMNGGDSTCVALLPSGFAILPDGYFGHG 718 (784)
Q Consensus 642 ~~~gn~vsll~~~~~~~~-~~~~liLQes~td-~sgs~vV-yAPvD~~~m~~vm~G~D~~~v~lLPSGF~I~Pdg~~~~~ 718 (784)
+..+.|=-..++...+- ..+..+++-..+| ..|++++ +..|+-+.-.. .|+ --+.++=+||.|-|-|.
T Consensus 92 -d~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~--VRa~~~~~gylI~P~~~---- 162 (205)
T cd08909 92 -DKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPL--LGG--VRAVVLDSQYLIEPCGS---- 162 (205)
T ss_pred -CCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCC--CCc--EEEEEEcCcEEEEECCC----
Confidence 22244444444433222 3455555553334 5676543 33344332110 111 13455668888888321
Q ss_pred CccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccch-hHHHHhhHhHHHHHHHHHHhhc
Q 003954 719 GLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVE-SVETVNNLISCTIQKIKAAVLE 783 (784)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~-sv~tv~~li~~tv~~Ik~Al~~ 783 (784)
|+|.||---|+=.... .++ -+..+..|++.-+.||+.++..
T Consensus 163 -------------------g~trvt~i~~vDpkG~-----~P~W~~n~~g~~~~~~~~~~r~sf~~ 204 (205)
T cd08909 163 -------------------GKSRLTHICRVDLKGH-----SPEWYNKGFGHLCAAEAARIRNSFQP 204 (205)
T ss_pred -------------------CCEEEEEEEEecCCCC-----ChHHHHHhHHHHHHHHHHHHHhhccC
Confidence 4677765545444433 334 4444788888999999998764
No 83
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=92.57 E-value=4.9 Score=41.68 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=60.9
Q ss_pred CCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecc-cChHHHHHhhhccccchhhhhhcCCCccceeee
Q 003954 559 SSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLP-MTRQRLFDFMRDERMRSEWDILSNGGPLQEMVH 637 (784)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~ 637 (784)
-.+.+|.... ..++|+|-.|... | ..+.--++...++ ++++.|+++|.|...|.+||... .|+..
T Consensus 22 ~~~~~W~l~~---~~~~i~Vy~r~~~---~---s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~~ 87 (207)
T cd08910 22 LDGAAWELLV---ESSGISIYRLLDE---Q---SGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYV-----KELYE 87 (207)
T ss_pred CCCCCeEEEE---ecCCeEEEEeccC---C---CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHH-----Hhhee
Confidence 4446799876 3578999988752 2 2244677788889 99999999999999999999754 23222
Q ss_pred cccCCCCCCeEEEEEcccCC-CCCCceEEEEe
Q 003954 638 IAKGQAPGNCASLLRAGAMN-VNDSGMLILQE 668 (784)
Q Consensus 638 ia~g~~~gn~vsll~~~~~~-~~~~~~liLQe 668 (784)
. ..+++.|--.+....- -..+++++++.
T Consensus 88 ~---~~~~~~i~y~~~k~PwPvs~RD~V~~r~ 116 (207)
T cd08910 88 K---ECDGETVIYWEVKYPFPLSNRDYVYIRQ 116 (207)
T ss_pred e---cCCCCEEEEEEEEcCCCCCCceEEEEEE
Confidence 1 1335555555443221 33456666655
No 84
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=91.84 E-value=6.6 Score=41.75 Aligned_cols=187 Identities=17% Similarity=0.149 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCceeeecCCC-----Ccc-eEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHh
Q 003954 540 SMLKLAQRMTYNFCSGVCASSVRKWDKLCVGNV-----GED-VRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDF 613 (784)
Q Consensus 540 sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~-----~~d-vrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~F 613 (784)
-|+.||..-+.-|- .+.-...-.|.+.. +.+ .|. .+++.+.. .+..+...+..+-++-.+.+.|..|.++
T Consensus 3 ~~~~lA~~am~Ell-~~a~~~~plWi~~~-~~~~~~l~~dey~~~f~~~~--~~~~~~~~~eASR~~glV~m~~~~lVe~ 78 (229)
T cd08875 3 GLLELAEEAMDELL-KLAQGGEPLWIKSP-GMKPEILNPDEYERMFPRHG--GSKPGGFTTEASRACGLVMMNAIKLVEI 78 (229)
T ss_pred HHHHHHHHHHHHHH-HHhccCCCCceecC-CCCccccCHHHHhhcccCcC--CCCCCCCeEEEEeeeEEEecCHHHHHHH
Confidence 47889999999998 44555577899876 432 122 23222221 1212234577888999999999999999
Q ss_pred hhccccchh-hhhhcCCCccceeeecccCCCCCCeEEEEEcccCC----CCCCceEEEEeeccCCCccEEEEe-ecCccc
Q 003954 614 MRDERMRSE-WDILSNGGPLQEMVHIAKGQAPGNCASLLRAGAMN----VNDSGMLILQETWNDSSGSLVVYA-PVDVPS 687 (784)
Q Consensus 614 Lrd~~~R~e-Wd~ls~g~~~qe~~~ia~g~~~gn~vsll~~~~~~----~~~~~~liLQes~td~sgs~vVyA-PvD~~~ 687 (784)
|.|..++.+ .+-.+.-..+-++..=.+|.+.+..+.|+..+-.- ..-.+..+|.-|+--.-|+.+|-- .+|-..
T Consensus 79 lmD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~ 158 (229)
T cd08875 79 LMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQ 158 (229)
T ss_pred HhChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccc
Confidence 999555544 33333333233332222233456678887765211 123689999986556778776633 333210
Q ss_pred ccccccCCCCC---CccccCCccEEcCCCCCCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccc
Q 003954 688 MSMVMNGGDST---CVALLPSGFAILPDGYFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKL 758 (784)
Q Consensus 688 m~~vm~G~D~~---~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l 758 (784)
+..-+. .--.+||||-|=|- .+|+|.+|+-=++-++..+.-.+
T Consensus 159 -----~~p~~~~~~r~~~~PSGcLIq~~-----------------------~nG~SkVtwVeH~e~d~~~~~~l 204 (229)
T cd08875 159 -----TAPPPASFVRCRRLPSGCLIQDM-----------------------PNGYSKVTWVEHVEVDEKPVHLL 204 (229)
T ss_pred -----cCCCCCCccEEEEecCcEEEEEC-----------------------CCCceEEEEEEEEeccCCccccc
Confidence 111111 23489999998772 12678888888877776543333
No 85
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=91.82 E-value=1.6 Score=46.56 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=47.7
Q ss_pred CCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhc
Q 003954 559 SSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILS 627 (784)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls 627 (784)
...++|..-. ..++|+|.++. +. -+++-+.-+-+++|++.||++|.|...|.+||...
T Consensus 53 a~~~~W~l~~---dkdgIkVytr~-----~s---~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~ 110 (236)
T cd08914 53 AAKSGWEVTS---TVEKIKIYTLE-----EH---DVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHF 110 (236)
T ss_pred cccCCCEEEE---ccCCEEEEEec-----CC---CcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhh
Confidence 3478998665 46899999984 22 26788888889999999999999999999999744
No 86
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=90.44 E-value=0.66 Score=44.09 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=27.6
Q ss_pred CCCCCHHHHH-HHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecc
Q 003954 98 YHRHTPHQIQ-ELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQ 143 (784)
Q Consensus 98 RtrfT~~Ql~-~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQ 143 (784)
|++||.++.. .+...++.. ....++|+++|+++.++..|.+
T Consensus 10 rr~ys~EfK~~aV~~~~~~g-----~sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 10 RRRRTTQEKIAIVQQSFEPG-----MTVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCCHHHHHHHHHHHHcCC-----CCHHHHHHHHCcCHHHHHHHHH
Confidence 3457777644 444444422 2356789999999999999954
No 87
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=89.45 E-value=20 Score=37.56 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=43.3
Q ss_pred CCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhcC
Q 003954 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSN 628 (784)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~ 628 (784)
..++|..-. ..+||.|..+.+...+|.- - .+---++.-|+.|+||+.+..+|.+||....
T Consensus 21 ~~~~Wkl~k---~~~~~~v~~k~~~ef~gkl----~--R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~ 80 (202)
T cd08902 21 LEEEWRVAK---KSKDVTVWRKPSEEFGGYL----Y--KAQGVVEDVYNRIVDHIRPGPYRLDWDSLMT 80 (202)
T ss_pred cccCcEEEE---eCCCEEEEEecCCcCCCce----E--EEEEEecCCHHHHHHHHhcccchhcccchhh
Confidence 677998665 2489999999885545531 1 1111227888999999999999999997543
No 88
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=88.25 E-value=4.9 Score=42.97 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=44.1
Q ss_pred CCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhc
Q 003954 559 SSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILS 627 (784)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls 627 (784)
...++|..-. ..++|+|.++.. +. +++-+.=+-+++|++.||++|.|...|.+||...
T Consensus 56 ~~~~~W~l~~---~~~gI~Vyt~~~-----s~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~ 113 (240)
T cd08913 56 VAKDNWVLSS---EKNQVRLYTLEE-----DK---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHY 113 (240)
T ss_pred cccCCCEEEE---ccCCEEEEEEeC-----CC---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhc
Confidence 4566898665 358999999553 11 2344666778999999999999999999999644
No 89
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=87.59 E-value=4.3 Score=42.41 Aligned_cols=86 Identities=16% Similarity=0.109 Sum_probs=63.1
Q ss_pred CeeEEeeeeeecccccccceeeEEEEe-eeeecC-CeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCC---Ccc
Q 003954 398 GALQVMVAEFQVLSPLVPVRQAKFLRF-CKQHIE-GVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPN---NYS 472 (784)
Q Consensus 398 g~lqlm~ael~~~SpLvp~Re~~fLRy-ckq~~~-g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~n---G~s 472 (784)
+...+.|.+..+|-| +.+|+|..|.. +...+. ..++|+.++++..........++|.+ -=||..|+..|. +-.
T Consensus 89 ~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y~SgE~~~~~p~~~~~~~ 166 (208)
T cd08864 89 VVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-YASVEKISYLPDADGKSN 166 (208)
T ss_pred ceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-EEEEEEEEEcCccCCCcC
Confidence 356888889999999 89999999999 666652 67899999987542110112678887 779999998885 478
Q ss_pred EEEEEEeeeeccc
Q 003954 473 KVTWIEHAEYDES 485 (784)
Q Consensus 473 kVtwVeH~e~d~~ 485 (784)
+|+|+==...|+.
T Consensus 167 ~vew~maT~sDpG 179 (208)
T cd08864 167 KVEWIMATRSDAG 179 (208)
T ss_pred CEEEEEEEeeCCC
Confidence 9999983333444
No 90
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=86.60 E-value=5.2 Score=42.13 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=76.3
Q ss_pred EechhHHHHHhcCh---hhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeecC
Q 003954 354 IINSSALIETMMDA---NRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIE 430 (784)
Q Consensus 354 ~~~~~~LVe~lmD~---~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~~ 430 (784)
.+.|..+-++|+|. .+|=.+ |.+-.||+.. .. + |+ +++|-+.+.|.|+- .||+-++|---+.++
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~----vi~~e~ie~d-~~--t----g~-~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~ 129 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDM----VIELETIEED-PV--T----GT-EVVYWVKKFPFPMS-NRDYVYVRRWWESDE 129 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHH----hhhheeeeec-CC--C----Cc-eEEEEEEeCCcccC-CccEEEEEEEEecCC
Confidence 35688899999996 599888 4444444443 21 2 22 78999999998875 599999988777777
Q ss_pred CeEEEEEEeccCCCCCCCCCCccceeecCCcceEe-----eCCCC-ccEEEEEEe
Q 003954 431 GVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQ-----DVPNN-YSKVTWIEH 479 (784)
Q Consensus 431 g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq-----~~~nG-~skVtwVeH 479 (784)
..-+||-.|+....- +.....+|..-.=||.+|| +-++| .|-++|.+|
T Consensus 130 k~~~i~s~~v~h~s~-P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 130 KDYYIVSKSVQHPSY-PPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred ceEEEEEecccCCCc-CCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 777788777763311 1112457888889999999 44454 344455443
No 91
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=85.54 E-value=4.4 Score=42.87 Aligned_cols=60 Identities=27% Similarity=0.276 Sum_probs=36.1
Q ss_pred cchhhHHHHHH--HhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhh
Q 003954 143 QNRRTQMKTQM--ERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGR 217 (784)
Q Consensus 143 QNRRak~Kr~~--~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r 217 (784)
|+-|-|.|.+. .+.+-..|..+|++|+.||+.|++...+. - .+.+.|+.+-..|++||..
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L--------------~-~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESL--------------L-AKNHELDSELELLRQELAE 143 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-hhhHHHHHHHHHHHHHHHh
Confidence 45555555443 33444557888888888888888766422 1 3445566666666666543
No 92
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=85.25 E-value=14 Score=36.24 Aligned_cols=140 Identities=10% Similarity=0.145 Sum_probs=71.3
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeee
Q 003954 349 ETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQH 428 (784)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~ 428 (784)
.+-+|.-.+..+-+++-|..+|-+.||.++. .+|+ +.|..+ ......++...+ ..+.-|.=|.+.
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~----~~~l-~~~~~~------~~~r~~i~~~~~--g~~~~w~s~~~~-- 69 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEYAE----AEVL-EEDGDT------VRFRLTMHPDAN--GTVWSWVSERTL-- 69 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccceEE----EEEE-EecCCe------EEEEEEEEeccC--CEEEEEEEEEEe--
Confidence 4566777899999999999999999988654 5667 543322 111122233332 122222224332
Q ss_pred cCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHH
Q 003954 429 IEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVA 508 (784)
Q Consensus 429 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla 508 (784)
....|-|.=..+.. .+ ...+=--..+++.++| |+|++..+++...-. .++-+++..-.--.-+.=++
T Consensus 70 ~~~~~~i~~~~~~~---~p-------~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 136 (146)
T cd08860 70 DPVNRTVRARRVET---GP-------FAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQMA 136 (146)
T ss_pred cCCCcEEEEEEecC---CC-------cceeeeeEEEEECCCC-EEEEEEEEEEECCCC--ccchHHHHHHHhcccHHHHH
Confidence 33334333112111 11 1122223446888887 999999998865211 22222222222222334456
Q ss_pred HHHHHHHH
Q 003954 509 TLQRQCEC 516 (784)
Q Consensus 509 ~LqR~cer 516 (784)
+|.+.+|+
T Consensus 137 ~Lk~~aE~ 144 (146)
T cd08860 137 RIKKKIEA 144 (146)
T ss_pred HHHHHhhh
Confidence 66666654
No 93
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=83.83 E-value=58 Score=33.80 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhh-ccc
Q 003954 540 SMLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMR-DER 618 (784)
Q Consensus 540 sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLr-d~~ 618 (784)
+-.++++.....|-.-.+ ..++|.... .+.++++|.++... +. | --.+.-.-+|+|++.||++|. |-.
T Consensus 5 ~y~~~~~~~~~~~~~~~~--~~~~W~~~~--~~~~gi~v~s~~~~---~~--~--k~~k~e~~i~~~~~~l~~~l~~d~e 73 (209)
T cd08905 5 SYIKQGEEALQKSLSILQ--DQEGWKTEI--VAENGDKVLSKVVP---DI--G--KVFRLEVVVDQPLDNLYSELVDRME 73 (209)
T ss_pred HHHHHHHHHHHHHHHHhc--cccCCEEEE--ecCCCCEEEEEEcC---CC--C--cEEEEEEEecCCHHHHHHHHHhchh
Confidence 344555555555554442 456899774 23567888886652 22 2 344556678999999996666 569
Q ss_pred cchhhhhhcCCCccceeeecccCCCCCCeEEEEEcccC--C-CCCCceEEEEe
Q 003954 619 MRSEWDILSNGGPLQEMVHIAKGQAPGNCASLLRAGAM--N-VNDSGMLILQE 668 (784)
Q Consensus 619 ~R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsll~~~~~--~-~~~~~~liLQe 668 (784)
.+.+|+..+... +.+.+| ++.++|.-....+. . -+.+++++++-
T Consensus 74 ~~~~W~~~~~~~--~vl~~i----d~~~~i~y~~~~p~p~~~vs~RD~V~~~~ 120 (209)
T cd08905 74 QMGEWNPNVKEV--KILQRI----GKDTLITHEVAAETAGNVVGPRDFVSVRC 120 (209)
T ss_pred hhceecccchHH--HHHhhc----CCCceEEEEEeccCCCCccCccceEEEEE
Confidence 999999754322 223333 33444444421111 1 34467777665
No 94
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=83.37 E-value=16 Score=34.46 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=28.6
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEe
Q 003954 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVL 387 (784)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi 387 (784)
|++-.|...+..+-++|.|.+.|.+.+|.+. ..+++
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~----~~~~l 37 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLA----ESRLL 37 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCce----EEEEE
Confidence 3456677788999999999999999988854 45556
No 95
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=82.73 E-value=0.89 Score=37.23 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=34.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccch
Q 003954 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNR 145 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNR 145 (784)
||+|..+|-+|...+=..++... ...+||+++|++..+|.-|..|+
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 56788999998888878888775 47889999999999999998774
No 96
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=82.47 E-value=30 Score=36.76 Aligned_cols=100 Identities=13% Similarity=0.229 Sum_probs=62.3
Q ss_pred hccCCCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEE-EEEEeeecc-cChHHHHHhhhccccchhhhhhcCCCcc
Q 003954 555 GVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVL-CAATTVWLP-MTRQRLFDFMRDERMRSEWDILSNGGPL 632 (784)
Q Consensus 555 ~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl-~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~ls~g~~~ 632 (784)
+.-+-..++|.... . .++|+|-.|...+ . |+++ .-++..-++ ++++.++++|.|...|.+||.-... +
T Consensus 19 ~~~~~~~~~W~l~~-~--~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~--~ 88 (235)
T cd08872 19 ALEDVGADGWQLFA-E--EGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLEN--F 88 (235)
T ss_pred HHccCCCCCCEEEE-e--CCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhhe--e
Confidence 33345566899776 3 5789999987632 2 3332 467777889 9999999999999999999964322 2
Q ss_pred ceeeecccCCCCCCeEEEEEcccCC-CCCCceEEEEe
Q 003954 633 QEMVHIAKGQAPGNCASLLRAGAMN-VNDSGMLILQE 668 (784)
Q Consensus 633 qe~~~ia~g~~~gn~vsll~~~~~~-~~~~~~liLQe 668 (784)
..+-++ ++.+.|--...+..- ..++++.++.-
T Consensus 89 ~vie~l----~~~~~I~Y~~~k~PwPvs~RD~V~~~~ 121 (235)
T cd08872 89 HVVETL----SQDTLIFHQTHKRVWPAAQRDALFVSH 121 (235)
T ss_pred EEEEec----CCCCEEEEEEccCCCCCCCcEEEEEEE
Confidence 233333 334443333322111 24567766655
No 97
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=81.75 E-value=0.7 Score=55.27 Aligned_cols=47 Identities=19% Similarity=0.451 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHH
Q 003954 106 IQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (784)
Q Consensus 106 l~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (784)
...|...|..|..|+..+...+|.+.||+.+.||.||++++++....
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv 614 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSV 614 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhh
Confidence 78899999999999999999999999999999999999998876653
No 98
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=81.48 E-value=22 Score=33.09 Aligned_cols=119 Identities=9% Similarity=0.132 Sum_probs=63.6
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeec
Q 003954 350 TGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHI 429 (784)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~ 429 (784)
+-.+...+.++.++|.|.+.|.+-+|.+.. ++++ +. +...+ +....+ .|+ ..|--...+|...-+
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~----~~~~-~~-------~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~ 70 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCES----LEKI-GP-------NEYEA-TVKLKV-GPV-KGTFKGKVELSDLDP 70 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchhh----cccc-CC-------CeEEE-EEEEEE-ccE-EEEEEEEEEEEecCC
Confidence 345677889999999999999999998664 5666 31 22221 122222 232 223222345554333
Q ss_pred CCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeeccccccccccccc
Q 003954 430 EGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLL 495 (784)
Q Consensus 430 ~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~ 495 (784)
+..+++.-..... . .+. ..=--+-+.+. +|.++|+|.-+++..- .+..|..+++
T Consensus 71 ~~~~~~~~~~~~~---~----~~~---~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 71 PESYTITGEGKGG---A----GFV---KGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred CcEEEEEEEEcCC---C----ceE---EEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 4554444221110 0 011 11122346777 5679999999999653 2333444443
No 99
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=81.17 E-value=9.5 Score=37.04 Aligned_cols=87 Identities=26% Similarity=0.375 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCcceEEeeccchhhHHHHHHHhhhhHHHHHhhHHHHHhHHHHHH
Q 003954 99 HRHTPHQIQELESFFKECPHPDEKQRSELSRRL-GLESKQIKFWFQNRRTQMKTQMERHENIILRQEHDKLRAENEMLKD 177 (784)
Q Consensus 99 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L-gLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~~~l~~en~~l~e 177 (784)
.+|+.+++-.+ ..| +|=+.| |++...|--|=|.||+-.-|-........--++.+.|..+|..|..
T Consensus 22 d~lsDd~Lvsm------------SVR-eLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSM------------SVR-ELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHh------------hHH-HHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888887665 222 233343 8888888888888887655544333333333444455566655553
Q ss_pred hcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhhhh
Q 003954 178 AMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICI 220 (784)
Q Consensus 178 a~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~~~ 220 (784)
|.++|+.||++++.|++-...
T Consensus 89 ----------------------qv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 89 ----------------------QVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888888765433
No 100
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=81.07 E-value=9.6 Score=35.80 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=23.4
Q ss_pred ceeEEechhHHHHHhcChhhHhhhccc
Q 003954 350 TGMVIINSSALIETMMDANRWAEMFPC 376 (784)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~ 376 (784)
+.+|...+..+-++|-|.++|-+.+|+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~ 30 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT 30 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC
Confidence 456777889999999999999998787
No 101
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=80.00 E-value=11 Score=35.39 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=74.1
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeee
Q 003954 349 ETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQH 428 (784)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~ 428 (784)
.+..|...+..+.+++-|.+.|.+.+|.+.. .+++ +.+. ++ +.+++.+..|. -.|++. .|++-.
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~----~~vl-~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~- 66 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTA----SRVL-ERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV- 66 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccc----cEEE-EcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-
Confidence 3456667788899999999999999998765 4445 3211 11 22233333332 244443 333321
Q ss_pred cCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHH
Q 003954 429 IEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVA 508 (784)
Q Consensus 429 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla 508 (784)
.+. .+ -=.++++. + ..+=--..+++.++|.|+|+|.-|++..-.-...|..+++ .=..++-|.
T Consensus 67 ~~~-~i-~~~~~~g~--------~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l~~~l~~~~~----~~~~~~~l~ 129 (138)
T cd07813 67 PPE-SI-EAELVDGP--------F---KHLEGEWRFKPLGENACKVEFDLEFEFKSRLLEALAGLVF----DEVAKKMVD 129 (138)
T ss_pred CCC-EE-EEEecCCC--------h---hhceeEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHH----HHHHHHHHH
Confidence 133 32 11222221 0 1112234578899899999999999986332223333333 222566677
Q ss_pred HHHHHHHH
Q 003954 509 TLQRQCEC 516 (784)
Q Consensus 509 ~LqR~cer 516 (784)
++.+.|++
T Consensus 130 ~f~~~~~~ 137 (138)
T cd07813 130 AFEKRAKQ 137 (138)
T ss_pred HHHHHHhh
Confidence 77666664
No 102
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.84 E-value=5.2 Score=31.96 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=18.8
Q ss_pred HHhhhhHHHHHhhHHHHHhHHHHH
Q 003954 153 MERHENIILRQEHDKLRAENEMLK 176 (784)
Q Consensus 153 ~~~~e~~~l~~e~~~l~~en~~l~ 176 (784)
+.+.++..|+..++.|++++..|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~ 25 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLK 25 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999988876554
No 103
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=74.75 E-value=41 Score=31.08 Aligned_cols=107 Identities=14% Similarity=0.215 Sum_probs=61.1
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeee
Q 003954 349 ETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQH 428 (784)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~ 428 (784)
.+..|...+.++.+.|.|.+.|.+.+|.+. .++++ ..+.. |.-...+ +.+- ..+.++-+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~----~~~~~-~~~~~----~~~~~~~--~~~~--~~~~~~~~~~~~~~~~ 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKVK----SVEVL-LRDND----GRPEMVR--IGVG--AYGIKDTYALEYTWDG 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcceE----EEEEe-ccCCC----CCEEEEE--EEEe--eeeEEEEEEEEEEEcC
Confidence 456677889999999999999999999844 45555 43322 2212222 2221 2244555556665432
Q ss_pred cCCe--EEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecc
Q 003954 429 IEGV--WAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDE 484 (784)
Q Consensus 429 ~~g~--w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~ 484 (784)
+.. |-+.+. . .+.... .-+-+++.++ .|+|+|.-+++..-
T Consensus 73 -~~~i~~~~~~~----~-------~~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 73 -AGSVSWTLVEG----E-------GNRSQE---GSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred -CCcEEEEEecc----c-------ceeEEE---EEEEEEECCC-CEEEEEEEEEEecC
Confidence 222 222111 0 011111 1255788877 59999999998743
No 104
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=72.48 E-value=72 Score=29.41 Aligned_cols=133 Identities=9% Similarity=0.011 Sum_probs=67.9
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeec
Q 003954 350 TGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHI 429 (784)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~ 429 (784)
+..|...+..+-++|.|.+.|.+-+|.+. .++++ +. .+. ++.+-.|....+++ ..|++. .+
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~~----~~~~~-~~------~~~------~~~~~~~~g~~~~~-~~~v~~-~~ 65 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHVE----SVEQL-DD------TRS------HWKAKGPAGLSVEW-DAEITE-QV 65 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhhc----EEEEc-CC------Cce------EEEEecCCCCcEEE-EEEEec-cC
Confidence 34556678899999999999999998643 35666 31 111 11112232334443 345544 33
Q ss_pred CCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHHH
Q 003954 430 EGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVAT 509 (784)
Q Consensus 430 ~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~ 509 (784)
.+..++.. ..++.. . ....++ +++.++|.|+||+--|.+......-.++-+++..-.-=..+++|..
T Consensus 66 ~~~~i~~~-~~~~~~-~-----~~~~~~------f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (139)
T cd07817 66 PNERIAWR-SVEGAD-P-----NAGSVR------FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRR 132 (139)
T ss_pred CCCEEEEE-ECCCCC-C-----cceEEE------EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHH
Confidence 44443322 222211 1 111222 4677777899999999887643322233333322222233444444
Q ss_pred HHHHH
Q 003954 510 LQRQC 514 (784)
Q Consensus 510 LqR~c 514 (784)
|.+++
T Consensus 133 lk~~a 137 (139)
T cd07817 133 FKQLV 137 (139)
T ss_pred HHHHh
Confidence 44443
No 105
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=69.87 E-value=5.9 Score=43.28 Aligned_cols=41 Identities=32% Similarity=0.286 Sum_probs=27.2
Q ss_pred hHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHh
Q 003954 158 NIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (784)
Q Consensus 158 ~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~ 216 (784)
...+++||++|+.|+..+++++. ...+.|+.||++||+.|.
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~------------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLE------------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhc
Confidence 34567777777777777654442 223348889999998764
No 106
>PRK10724 hypothetical protein; Provisional
Probab=69.75 E-value=59 Score=32.43 Aligned_cols=137 Identities=12% Similarity=0.173 Sum_probs=77.4
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeee
Q 003954 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ 427 (784)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq 427 (784)
+.+.+|...+.++.+.+.|.++|-+.+|... ..+|+ .... ++ +.+++.+--.-+ ...|.. |+...
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~----~s~vl-~~~~----~~----~~a~l~v~~~g~-~~~f~s-rv~~~ 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGCT----GSRVL-ESTP----GQ----MTAAVDVSKAGI-SKTFTT-RNQLT 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcccC----eEEEE-EecC----CE----EEEEEEEeeCCc-cEEEEE-EEEec
Confidence 4467888899999999999999998877654 44555 3221 12 467776544332 333333 33332
Q ss_pred ecCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHH
Q 003954 428 HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWV 507 (784)
Q Consensus 428 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwl 507 (784)
.++ .+.+ ..+++ + .+.+=.-.-+++.++|.|+|+.--++|+... |+.+++....--.|++-+
T Consensus 83 -~~~-~I~~-~~~~G----p-------F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~----l~~~~~~~~~~~~~~~mv 144 (158)
T PRK10724 83 -SNQ-SILM-QLVDG----P-------FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK----LIELAFGRVFKELASNMV 144 (158)
T ss_pred -CCC-EEEE-EecCC----C-------hhhccceEEEEECCCCCEEEEEEEEEEEchH----HHHHHHHHHHHHHHHHHH
Confidence 333 3333 22232 1 1233333446778877899999988886643 333334222233355666
Q ss_pred HHHHHHHHHH
Q 003954 508 ATLQRQCECL 517 (784)
Q Consensus 508 a~LqR~cerl 517 (784)
.+..+-|+.+
T Consensus 145 ~AF~~Ra~~~ 154 (158)
T PRK10724 145 QAFTVRAKEV 154 (158)
T ss_pred HHHHHHHHHH
Confidence 6665555544
No 107
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=67.10 E-value=11 Score=32.99 Aligned_cols=43 Identities=30% Similarity=0.432 Sum_probs=30.8
Q ss_pred HhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhh
Q 003954 154 ERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRI 218 (784)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~ 218 (784)
.-.....|+.+++.|+.+|..+.+ +...|+.||.+|++|....
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~----------------------e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKE----------------------ENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH----------------------HHHHHHHHHHHHHHHHHHH
Confidence 334456677888888888877773 3446889999999887533
No 108
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=66.65 E-value=1e+02 Score=28.11 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=26.0
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeeEe
Q 003954 350 TGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVL 387 (784)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi 387 (784)
+..|...+.++-++|.|...|.+-+|.+. .++++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~~----~~~~~ 40 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGVK----SVELL 40 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTEE----EEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhceE----EEEEc
Confidence 44677889999999999999998877554 45566
No 109
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=64.05 E-value=66 Score=29.44 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=25.7
Q ss_pred eeEEechhHHHHHhcChhhHhhhcccccccceEeeEe
Q 003954 351 GMVIINSSALIETMMDANRWAEMFPCMIARSATTDVL 387 (784)
Q Consensus 351 ~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi 387 (784)
..|...+.++-+.|.|.+.|.+-+|.+ ..++++
T Consensus 7 ~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~ 39 (140)
T cd07821 7 VTIDAPADKVWALLSDFGGLHKWHPAV----ASCELE 39 (140)
T ss_pred EEECCCHHHHHHHHhCcCchhhhccCc----ceEEee
Confidence 456777889999999999999887753 455665
No 110
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=63.99 E-value=10 Score=40.92 Aligned_cols=41 Identities=39% Similarity=0.512 Sum_probs=27.9
Q ss_pred hhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHh
Q 003954 157 ENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (784)
Q Consensus 157 e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~ 216 (784)
....+++||++|++||..++..+ .+.+.++.||.+||+-|.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~-------------------~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRL-------------------QELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhc
Confidence 44556777777777777776555 344567888888888653
No 111
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=63.29 E-value=0.87 Score=38.95 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeec
Q 003954 96 KKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWF 142 (784)
Q Consensus 96 R~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWF 142 (784)
++|++||+++...+=..+.. ......++|+++|+++.++..|-
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~----~g~sv~~va~~~gi~~~~l~~W~ 44 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLE----SGESVSEVAREYGISPSTLYNWR 44 (76)
T ss_dssp -SS----HHHHHHHHHHHHH----HHCHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCceEeeecccccccccccHHH
Confidence 45678999887766555521 23567889999999999998884
No 112
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=63.25 E-value=52 Score=30.06 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=28.4
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCC
Q 003954 350 TGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPS 391 (784)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g 391 (784)
+..|...+.++-++|-|.++|.+-.|.+. .++++ +.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~----~~~~~-~~~ 40 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGVV----EVEKI-TDG 40 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCce----EEEEc-CCC
Confidence 34566778899999999999999988864 55666 543
No 113
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=62.09 E-value=14 Score=33.61 Aligned_cols=47 Identities=28% Similarity=0.532 Sum_probs=36.2
Q ss_pred HHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhhhhhh
Q 003954 160 ILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICILA 222 (784)
Q Consensus 160 ~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~~~~~ 222 (784)
.+.+++..|+.|.+.|++.+.+- .+.-+..+||.+|++|+.|+..+-
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~n----------------Pevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHN----------------PEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhC----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888888877532 566688899999999999987764
No 114
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=60.51 E-value=57 Score=30.92 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=23.3
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccc
Q 003954 349 ETGMVIINSSALIETMMDANRWAEMFPCM 377 (784)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~i 377 (784)
.+..|...+..+-+++-|...|-+-.|..
T Consensus 6 ~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 6 RSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 34568888999999999999998876644
No 115
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=58.67 E-value=91 Score=36.45 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHHH-H-hcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhH-HHHHHHhhhhHHHHHhhHHHHHhHHH
Q 003954 98 YHRHTPHQIQELESF-F-KECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ-MKTQMERHENIILRQEHDKLRAENEM 174 (784)
Q Consensus 98 RtrfT~~Ql~~LE~~-F-~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak-~Kr~~~~~e~~~l~~e~~~l~~en~~ 174 (784)
--++|.+....|.+. + --..+|-.+.-+++-++.. .=.+|+|.+ .+|++++.--..|........+||++
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrvR-------RKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqe 290 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRVR-------RKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQE 290 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHHH-------HHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHH
Confidence 346788888888776 2 2234666665566555541 111233322 22222222222344444555566666
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhhhhhhhc
Q 003954 175 LKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICILANK 224 (784)
Q Consensus 175 l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~~~~~~~ 224 (784)
|+ .+.++|..+|..|-++|.++.++...
T Consensus 291 L~----------------------kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 291 LQ----------------------KKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HH----------------------HHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 66 34557888999999999887766443
No 116
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=55.45 E-value=83 Score=28.80 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=32.9
Q ss_pred ceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHH
Q 003954 462 FVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (784)
Q Consensus 462 clIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 515 (784)
+.+.+.+.|.|+|+|.+... .....++..++...+.-+-++|++.|.++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 34677767789998864222 1122345556666677777888888888775
No 117
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=53.75 E-value=70 Score=39.38 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=83.6
Q ss_pred CCCCCceeeecCCCCcceEEEEccCC-CCCCCCCccEEEEEEeeecccChHHHHHhhhccc-cchhhhhhcCCCccceee
Q 003954 559 SSVRKWDKLCVGNVGEDVRVLTRKNV-NDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDER-MRSEWDILSNGGPLQEMV 636 (784)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~-~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~-~R~eWd~ls~g~~~qe~~ 636 (784)
+....|.-+.. ..++||+-.-.- +..+...+-++ ++-=-++.+|+.||++|.+.. .|.|||.....+ +-+-
T Consensus 195 ~~~~~Wr~~~c---~NGlRiF~e~~~~~~~~~~~~~~m--KavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~--~vIE 267 (719)
T PLN00188 195 FSRKHWRLLQC---QNGLRIFEELLEVDYLPRSCSRAM--KAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYG--SLVE 267 (719)
T ss_pred cccCCeEEEEe---eccceeehhhhccccccccCCcee--EEEEEecCCHHHHHHHHhccCcccccchhcccce--EEEE
Confidence 55667776652 236777644321 11111122222 333446789999999997444 999999764322 2222
Q ss_pred ecccCCCCCCeEEEEEcccC----CCCCCceEEEEeeccCCCccEEE-EeecCcccccccccCCCCCCc--cccCCccEE
Q 003954 637 HIAKGQAPGNCASLLRAGAM----NVNDSGMLILQETWNDSSGSLVV-YAPVDVPSMSMVMNGGDSTCV--ALLPSGFAI 709 (784)
Q Consensus 637 ~ia~g~~~gn~vsll~~~~~----~~~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~D~~~v--~lLPSGF~I 709 (784)
+| +...+|.--++... --...+..++.--.-+.-|+|++ |-.|.-+.-- -=+.+| -+-|+||.|
T Consensus 268 ~I----D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~cP-----P~kG~VRg~~~pGGwiI 338 (719)
T PLN00188 268 EV----DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCG-----PQPGFVRAHLESGGFNI 338 (719)
T ss_pred Ee----cCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCCC-----CCCCeEEEEEeCCEEEE
Confidence 22 43445553333210 12235666666533356677765 4444433210 002222 377999999
Q ss_pred cCCCCCCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeec
Q 003954 710 LPDGYFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVN 751 (784)
Q Consensus 710 ~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~ 751 (784)
.|--.. . ...+|+||--+|+=..
T Consensus 339 sPL~~~--~-----------------g~~r~lv~~~lqtDlk 361 (719)
T PLN00188 339 SPLKPR--N-----------------GRPRTQVQHLMQIDLK 361 (719)
T ss_pred EECCCC--C-----------------CCCceEEEEEEEEccC
Confidence 993111 0 1147888888777554
No 118
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=52.59 E-value=13 Score=37.76 Aligned_cols=19 Identities=53% Similarity=0.646 Sum_probs=6.1
Q ss_pred hhhhhhHhhHHHHHHHhhh
Q 003954 200 ELQQLRIENARLKDELGRI 218 (784)
Q Consensus 200 e~q~L~~eNa~Lk~el~r~ 218 (784)
|++.|++|++|||||+..+
T Consensus 25 EKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556777777777776544
No 119
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.15 E-value=39 Score=42.18 Aligned_cols=54 Identities=39% Similarity=0.563 Sum_probs=38.9
Q ss_pred HHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhhhhh
Q 003954 161 LRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICIL 221 (784)
Q Consensus 161 l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~~~~ 221 (784)
++..++.|..+-+.|+.+|.+. |..+....+ ++-.||..+|+|||+-|-|+..+
T Consensus 337 lkEr~deletdlEILKaEmeek------G~~~~~~ss-~qfkqlEqqN~rLKdalVrLRDl 390 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEMEEK------GSDGQAASS-YQFKQLEQQNARLKDALVRLRDL 390 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------CCCCcccch-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445566666677788888775 333333335 88999999999999999887765
No 120
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=49.99 E-value=9.1 Score=49.19 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=54.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
..+-.|++++.-|...|-.+|+...+|.-.+++.++.-|++..|.+..|||++++++.+...
T Consensus 443 e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~ 504 (1406)
T KOG1146|consen 443 EPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHP 504 (1406)
T ss_pred hhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccc
Confidence 34556788999999999999999999999999999999999999999999998888875443
No 121
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=48.45 E-value=20 Score=39.76 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=14.1
Q ss_pred hhhHHHHHhhHHHHHhHHHHHH
Q 003954 156 HENIILRQEHDKLRAENEMLKD 177 (784)
Q Consensus 156 ~e~~~l~~e~~~l~~en~~l~e 177 (784)
.++..|++||++|+.||..|+.
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~ 53 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKI 53 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHH
Confidence 3455666777777777666663
No 122
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=47.32 E-value=39 Score=30.25 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=39.8
Q ss_pred HHHHhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHh----hhhhhhhc
Q 003954 151 TQMERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG----RICILANK 224 (784)
Q Consensus 151 r~~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~----r~~~~~~~ 224 (784)
-++.-..-..|+-+.+.|+.+|..+.++.... . .....|..||..||+|.. |+++++.+
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~--------------~-~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNA--------------Q-HQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455667888888888888888766421 1 234469999999999975 55555544
No 123
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=46.52 E-value=28 Score=36.85 Aligned_cols=182 Identities=16% Similarity=0.206 Sum_probs=93.6
Q ss_pred CCCCCCceeeecCCCCcceEEEE-ccCCCCCCCCCccEEEEEEeeecc-cChHHHHHhhhccccchhhhhhcCCCcccee
Q 003954 558 ASSVRKWDKLCVGNVGEDVRVLT-RKNVNDPGEPPGVVLCAATTVWLP-MTRQRLFDFMRDERMRSEWDILSNGGPLQEM 635 (784)
Q Consensus 558 ~s~~~~W~~l~~~~~~~dvrv~~-r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~ 635 (784)
+-++.+|..+- . ..+++|.. |.- +.| | .-=++-.-+. ++|..|+||+-|..-|.+||.+.--. ..+
T Consensus 25 ~~~~~~We~~~-~--k~~~~i~~q~~~--~~g-~----~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~--e~i 92 (219)
T KOG2761|consen 25 CDAGQGWELVM-D--KSTPSIWRQRRP--KTG-L----YEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIEL--ETI 92 (219)
T ss_pred cCcccchhhhc-c--cCCceEEEEccc--CCC-C----EEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhh--eee
Confidence 56778998876 2 45677766 332 223 2 2333334467 99999999999999999999753111 111
Q ss_pred eecccCCCCCCeEEEEEcc--cCCCCCCceEEEEeeccCCC-c-cEEEEeecCcccccccccCCCCCCccccCCccEEc-
Q 003954 636 VHIAKGQAPGNCASLLRAG--AMNVNDSGMLILQETWNDSS-G-SLVVYAPVDVPSMSMVMNGGDSTCVALLPSGFAIL- 710 (784)
Q Consensus 636 ~~ia~g~~~gn~vsll~~~--~~~~~~~~~liLQes~td~s-g-s~vVyAPvD~~~m~~vm~G~D~~~v~lLPSGF~I~- 710 (784)
... ...||- |++-. -.-+-.+--++++-.+.+.- - -+++-=-|+-+++ ---.+.--|-++=||+.|=
T Consensus 93 e~d---~~tg~~--vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~---P~~~~~vRv~~~~s~~~I~~ 164 (219)
T KOG2761|consen 93 EED---PVTGTE--VVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSY---PPLKKKVRVTVYRSGWLIRV 164 (219)
T ss_pred eec---CCCCce--EEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCc---CCcCCcEEEEEEEEEEEEEc
Confidence 111 112332 33211 01111122355554344321 1 1211111111110 0000112233555777776
Q ss_pred CCCCCCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHHH-HhhHhHHHHHHHHHHhhc
Q 003954 711 PDGYFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVET-VNNLISCTIQKIKAAVLE 783 (784)
Q Consensus 711 Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~t-v~~li~~tv~~Ik~Al~~ 783 (784)
| ... ....||- +-+++-.+|...+..+-|.- ++..+-..|.++-.|+.+
T Consensus 165 ~----~~~----------------~~~~~~~----~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~ 214 (219)
T KOG2761|consen 165 E----SRS----------------GDEQGCA----CEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLA 214 (219)
T ss_pred c----ccc----------------CCCCccE----EEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 2 100 0112333 33455567888888877765 888899999999988753
No 124
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=45.49 E-value=42 Score=39.64 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=16.8
Q ss_pred hhhhhhhHhhHHHHHHHhhhh
Q 003954 199 YELQQLRIENARLKDELGRIC 219 (784)
Q Consensus 199 ~e~q~L~~eNa~Lk~el~r~~ 219 (784)
.|.++|+.||+.||++|+-+.
T Consensus 316 ~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 316 SENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHhhhHHHHHHHHHHh
Confidence 467789999999999886553
No 125
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=45.26 E-value=25 Score=39.52 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=29.4
Q ss_pred hhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHh
Q 003954 156 HENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (784)
Q Consensus 156 ~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~ 216 (784)
..+..+++||++|++||..|+.++ .+.+.+..||++|++-+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l-------------------~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERL-------------------KSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhc
Confidence 455677888888888888887666 334456788888775543
No 126
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.95 E-value=24 Score=41.16 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=13.0
Q ss_pred HhhhhHHHHHhhHHHHHhHHHHHHhc
Q 003954 154 ERHENIILRQEHDKLRAENEMLKDAM 179 (784)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ea~ 179 (784)
...+|..|++||++|+.....+.+++
T Consensus 78 l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 78 LISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44455555555555555444433333
No 127
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=42.85 E-value=50 Score=36.23 Aligned_cols=43 Identities=30% Similarity=0.296 Sum_probs=27.3
Q ss_pred HhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHH
Q 003954 154 ERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDEL 215 (784)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el 215 (784)
.-.+...+..+|+.|+++++++.+.. .+.+.|+.||.+||+.|
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~~~~-------------------~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELEQLL-------------------EEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHh
Confidence 44455556666677777766665444 35556777777777776
No 128
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.69 E-value=52 Score=26.35 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=25.0
Q ss_pred HHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhhhhh
Q 003954 161 LRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICIL 221 (784)
Q Consensus 161 l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~~~~ 221 (784)
+..+++.|+..-..|+. +-..|..||+.|+.|+.++...
T Consensus 3 lE~Dy~~LK~~yd~Lk~----------------------~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 3 LERDYDALKASYDSLKA----------------------EYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred hHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777776666652 3345777777777777666543
No 129
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=39.42 E-value=34 Score=28.34 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhCCCcce
Q 003954 101 HTPHQIQELESFFKEC--PHPDEKQRSELSRRLGLESKQ 137 (784)
Q Consensus 101 fT~~Ql~~LE~~F~~~--~~Ps~~~R~eLA~~LgLs~rQ 137 (784)
+|+.|.+.|...|+.. .+|-...-.+||++||+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHH
Confidence 5889999999999765 334455568999999998753
No 130
>smart00338 BRLZ basic region leucin zipper.
Probab=38.92 E-value=1.1e+02 Score=25.78 Aligned_cols=40 Identities=40% Similarity=0.519 Sum_probs=27.8
Q ss_pred HhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHH
Q 003954 154 ERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDEL 215 (784)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el 215 (784)
+...-..|..+...|..+|..|...+ ..|..|+..|++++
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~----------------------~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEI----------------------ERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHh
Confidence 34455567777888888888877443 35777888887775
No 131
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=37.66 E-value=17 Score=34.83 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=23.5
Q ss_pred EeeecccChHHHHHhhhccccchhhh
Q 003954 599 TTVWLPMTRQRLFDFMRDERMRSEWD 624 (784)
Q Consensus 599 tS~wLpv~p~~vf~FLrd~~~R~eWd 624 (784)
-++.++.||++||+||.|......|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999988884
No 132
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=36.96 E-value=66 Score=37.19 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhcCCCCceEec
Q 003954 293 ALTAMDELIKMAEADSPLWIKS 314 (784)
Q Consensus 293 A~~Am~El~~la~~~~plWi~~ 314 (784)
|..||.|+..+.+..---|.+.
T Consensus 402 ak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 402 AKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888877777778664
No 133
>smart00340 HALZ homeobox associated leucin zipper.
Probab=36.66 E-value=29 Score=27.49 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=0.0
Q ss_pred hhhhHhhHHHHHHHhhhhhh
Q 003954 202 QQLRIENARLKDELGRICIL 221 (784)
Q Consensus 202 q~L~~eNa~Lk~el~r~~~~ 221 (784)
..|..||.||+.|++.+.++
T Consensus 15 e~LteeNrRL~ke~~eLral 34 (44)
T smart00340 15 ESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHhc
No 134
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=35.74 E-value=2.3e+02 Score=26.93 Aligned_cols=136 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred eEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeecCC
Q 003954 352 MVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEG 431 (784)
Q Consensus 352 ~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~~g 431 (784)
.+...+.++-+++.|.+.|-+-.|.+ +.++++ +.+.....+..++. ......|.+.-+..|+...-...
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~-~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~v~~~~p~~ 76 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGV----ERVVEL-EPGDEAGIGARRRY------TWRGLLPYRLRFELRVTRIEPLS 76 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhce----EEEEEc-cCCCCCCcceEEEE------EEEecCCcEEEEEEEEEeecCCc
Q ss_pred eEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeeccc---ccccccccccccccchhHHHHHH
Q 003954 432 VWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDES---IVHHLCRPLLSSGMGFGAPKWVA 508 (784)
Q Consensus 432 ~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~---~v~~l~rpl~~sg~afGA~rwla 508 (784)
.+++. ..-+........ |++.++| |+||+-.+++..-- ..+.++.+++....-=....-+.
T Consensus 77 ~~~~~-~~g~~~~~~~~~--------------~~~~~~g-t~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 140 (146)
T cd07824 77 LLEVR-ASGDLEGVGRWT--------------LAPDGSG-TVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEK 140 (146)
T ss_pred EEEEE-EEEeeeEEEEEE--------------EEEcCCC-EEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHH
Q ss_pred HHHHHH
Q 003954 509 TLQRQC 514 (784)
Q Consensus 509 ~LqR~c 514 (784)
.|.|.+
T Consensus 141 ~L~~~~ 146 (146)
T cd07824 141 GLARRL 146 (146)
T ss_pred HHHhhC
No 135
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.66 E-value=31 Score=31.86 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=26.8
Q ss_pred EEEEeeecccChHHHHHhhhccccchhhhh
Q 003954 596 CAATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (784)
Q Consensus 596 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 625 (784)
....|+.++.||..||++|.|.....+|.-
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p 32 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSP 32 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCc
Confidence 346789999999999999999999999984
No 136
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.62 E-value=2.1e+02 Score=25.04 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=23.7
Q ss_pred ceeEEechhHHHHHhcChhhHhhhccccc
Q 003954 350 TGMVIINSSALIETMMDANRWAEMFPCMI 378 (784)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV 378 (784)
...|...+..+-+.|.|.+.|..-+|.+.
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~~ 32 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGLE 32 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCcccc
Confidence 44566678899999999999999888743
No 137
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=34.52 E-value=33 Score=33.98 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHH
Q 003954 99 HRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (784)
Q Consensus 99 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~K 150 (784)
..+|+.|.+.|+..++ . ....++|+.||++...|+.|-++.+.|.|
T Consensus 5 ~~Lt~rqreVL~lr~~-G-----lTq~EIAe~LGiS~~tVs~ie~ra~kkLr 50 (141)
T PRK03975 5 SFLTERQIEVLRLRER-G-----LTQQEIADILGTSRANVSSIEKRARENIE 50 (141)
T ss_pred cCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5689999999988432 2 34678999999999999988775555444
No 138
>PF15058 Speriolin_N: Speriolin N terminus
Probab=34.28 E-value=52 Score=34.20 Aligned_cols=40 Identities=40% Similarity=0.509 Sum_probs=29.5
Q ss_pred hHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhhhh
Q 003954 158 NIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICI 220 (784)
Q Consensus 158 ~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~~~ 220 (784)
+.-++.++++|-.||++||+.. +|..||.+||.=|...+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlV-----------------------rLirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLV-----------------------RLIRENHELKSALGEACA 46 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHH-----------------------HHHHHHHHHHHHHHHhhc
Confidence 3456777888888888888655 478899999987655544
No 139
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=34.04 E-value=20 Score=28.28 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeec
Q 003954 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWF 142 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWF 142 (784)
.+++.|.+.|...|... ..-.++|+.+|++...|+.+.
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~lg~s~~~V~~~~ 41 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERLGISRSTVRRIL 41 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHHCCcHHHHHHHH
Confidence 47889999999999332 346789999999998877553
No 140
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=33.99 E-value=27 Score=31.97 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=24.8
Q ss_pred EEeeecccChHHHHHhhhccccchhhhh
Q 003954 598 ATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (784)
Q Consensus 598 ~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 625 (784)
..++-++.||..||++|.|-.+..+|..
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~ 29 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDP 29 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhcc
Confidence 3577789999999999999999999973
No 141
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=33.81 E-value=41 Score=30.83 Aligned_cols=29 Identities=14% Similarity=0.371 Sum_probs=24.1
Q ss_pred EEEeeecccChHHHHHhhhccccchhhhh
Q 003954 597 AATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (784)
Q Consensus 597 A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 625 (784)
...++-++.||+.||++|.|.....+|.-
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~~~~w~~ 32 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPENWPRWWP 32 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTGGGGTST
T ss_pred EEEEEEECCCHHHHHHHHhChhhhhhhhh
Confidence 34677889999999999999999999963
No 142
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.05 E-value=94 Score=33.09 Aligned_cols=45 Identities=29% Similarity=0.437 Sum_probs=26.8
Q ss_pred HHhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhhh
Q 003954 153 MERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRIC 219 (784)
Q Consensus 153 ~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~~ 219 (784)
....++..|..+++.+.++-..+++.+ .+|+.||++|.+++.++-
T Consensus 146 E~~~EkeeL~~eleele~e~ee~~erl----------------------k~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 146 ELQKEKEELLKELEELEAEYEEVQERL----------------------KRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHhch
Confidence 344445555555555555555555444 257788888887776543
No 143
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=31.23 E-value=38 Score=31.02 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=24.4
Q ss_pred EEeeecccChHHHHHhhhccccchhhh
Q 003954 598 ATTVWLPMTRQRLFDFMRDERMRSEWD 624 (784)
Q Consensus 598 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 624 (784)
..+.-+++|++.||++|.|..+..+|.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~ 30 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH 30 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc
Confidence 456789999999999999999999997
No 144
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=30.23 E-value=30 Score=32.12 Aligned_cols=28 Identities=7% Similarity=0.162 Sum_probs=25.0
Q ss_pred EEeeecccChHHHHHhhhccccchhhhh
Q 003954 598 ATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (784)
Q Consensus 598 ~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 625 (784)
..++-++.||++||+||.|.....+|..
T Consensus 4 ~~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 4 SGEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eeEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 3567789999999999999999999984
No 145
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=30.22 E-value=16 Score=27.80 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccch
Q 003954 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNR 145 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNR 145 (784)
.+++.+...++..|... ..-.++|+++|++...|+.|.+..
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~ 50 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRA 50 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 46788888888877433 336778999999999998776543
No 146
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=30.13 E-value=39 Score=31.19 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=25.5
Q ss_pred EEeeecccChHHHHHhhhccccchhhhh
Q 003954 598 ATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (784)
Q Consensus 598 ~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 625 (784)
..++-++.|++.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999984
No 147
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.99 E-value=35 Score=32.01 Aligned_cols=28 Identities=14% Similarity=0.225 Sum_probs=25.7
Q ss_pred EEeeecccChHHHHHhhhccccchhhhh
Q 003954 598 ATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (784)
Q Consensus 598 ~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 625 (784)
.+++.++.||.+||+.|.|-.+..+|.-
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p 29 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIP 29 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCc
Confidence 4689999999999999999999999974
No 148
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=29.92 E-value=34 Score=32.47 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=25.6
Q ss_pred EEEeeecccChHHHHHhhhccccchhh
Q 003954 597 AATTVWLPMTRQRLFDFMRDERMRSEW 623 (784)
Q Consensus 597 A~tS~wLpv~p~~vf~FLrd~~~R~eW 623 (784)
|.+++.++.||++||+.|-|+.+-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 149
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=29.28 E-value=3.3e+02 Score=24.73 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=48.2
Q ss_pred hHHHHHHHhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhhhh
Q 003954 147 TQMKTQMERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICI 220 (784)
Q Consensus 147 ak~Kr~~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~~~ 220 (784)
.+.+|..-+++-..|+.+.+.=..-+..|..++....++-+..|. ... ...+.|..|-|.|..|+.++-.
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~---~lp-~~~keLL~EIA~lE~eV~~LE~ 75 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPS---SLP-KKAKELLEEIALLEAEVAKLEQ 75 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccc---cCC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777788888777777777888888776655443333 222 4566788888888888776543
No 150
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=29.12 E-value=46 Score=34.09 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHh
Q 003954 181 NPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (784)
Q Consensus 181 ~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~ 216 (784)
+-.||.||++...-+.+ -..+.|...-.+|++|+.
T Consensus 136 ~F~Cp~Cg~~L~~~dn~-~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 136 GFRCPQCGEMLEEYDNS-ELIKELKEQIKELEEELK 170 (178)
T ss_pred CCcCCCCCCCCeecccH-HHHHHHHHHHHHHHHHhc
Confidence 34599999988876655 444456666666666654
No 151
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.05 E-value=1.2e+02 Score=26.79 Aligned_cols=53 Identities=28% Similarity=0.414 Sum_probs=33.5
Q ss_pred hhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHh----hhhhhhhc
Q 003954 157 ENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG----RICILANK 224 (784)
Q Consensus 157 e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~----r~~~~~~~ 224 (784)
--..|+-+.+.|+++|..|..+..+. . -....|..||..||+|-. |+.+++.|
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~--------------q-~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNA--------------Q-HQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHH--------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456667778888777766554311 1 233468899999999864 55555544
No 152
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=28.94 E-value=43 Score=30.90 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=26.5
Q ss_pred EEEEeeecccChHHHHHhhhccccchhhhh
Q 003954 596 CAATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (784)
Q Consensus 596 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 625 (784)
+...++-++.||..||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 445788899999999999999999999984
No 153
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.65 E-value=2.2e+02 Score=23.84 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=14.8
Q ss_pred HhhhhHHHHHhhHHHHHhHHHHHH
Q 003954 154 ERHENIILRQEHDKLRAENEMLKD 177 (784)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~e 177 (784)
+......|....+.|..+|..|+.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445566677777777666663
No 154
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=28.60 E-value=1.1e+02 Score=33.77 Aligned_cols=29 Identities=38% Similarity=0.369 Sum_probs=20.2
Q ss_pred HHHHhhhhHHHHHhhHHHHHhHHHHHHhc
Q 003954 151 TQMERHENIILRQEHDKLRAENEMLKDAM 179 (784)
Q Consensus 151 r~~~~~e~~~l~~e~~~l~~en~~l~ea~ 179 (784)
|+++|.+...+..|.+-|..+|++|++..
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~qa 271 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKDQA 271 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677778888888888887544
No 155
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=28.37 E-value=1.5e+02 Score=32.47 Aligned_cols=44 Identities=32% Similarity=0.298 Sum_probs=31.7
Q ss_pred HHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhh-hhhhHhhHHHHHHHhhhhhhhh
Q 003954 161 LRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYEL-QQLRIENARLKDELGRICILAN 223 (784)
Q Consensus 161 l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~-q~L~~eNa~Lk~el~r~~~~~~ 223 (784)
.-.....+.+||+.|++++. +. +++....+.|++|.+|+..++.
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~-------------------~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELL-------------------KKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466778999999998873 33 4555566669999999887654
No 156
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=28.12 E-value=1.1e+02 Score=28.96 Aligned_cols=32 Identities=13% Similarity=0.384 Sum_probs=27.3
Q ss_pred EEEeeecccChHHHHHhhhccccchhhhhhcC
Q 003954 597 AATTVWLPMTRQRLFDFMRDERMRSEWDILSN 628 (784)
Q Consensus 597 A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~ 628 (784)
...|.-++.||++||+++.|.....+|.-...
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~ 35 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWEK 35 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchhh
Confidence 45677789999999999999999999986443
No 157
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.53 E-value=5.4e+02 Score=24.40 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=25.0
Q ss_pred cceeEEechhHHHHHhcChhhHhhhccccc
Q 003954 349 ETGMVIINSSALIETMMDANRWAEMFPCMI 378 (784)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV 378 (784)
.+-.|...+..+-+.|.|.+.|.+-+|++-
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~ 32 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGAS 32 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCce
Confidence 345677889999999999999999988743
No 158
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.35 E-value=47 Score=31.20 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.5
Q ss_pred EeeecccChHHHHHhhhccccchhhh
Q 003954 599 TTVWLPMTRQRLFDFMRDERMRSEWD 624 (784)
Q Consensus 599 tS~wLpv~p~~vf~FLrd~~~R~eWd 624 (784)
.+.-+..||++||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 4 VSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEeCCHHHHHHHHhCccccceeC
Confidence 46667899999999999999999997
No 159
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=26.74 E-value=40 Score=31.06 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=24.8
Q ss_pred EEeeecccChHHHHHhhhccccchhhhh
Q 003954 598 ATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (784)
Q Consensus 598 ~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 625 (784)
..|+-++.||+.||++|.|..+-.+|.-
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~ 30 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFG 30 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhC
Confidence 3577889999999999999999999963
No 160
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=26.52 E-value=47 Score=29.29 Aligned_cols=27 Identities=19% Similarity=0.532 Sum_probs=23.8
Q ss_pred EeeecccChHHHHHhhhccccchhhhh
Q 003954 599 TTVWLPMTRQRLFDFMRDERMRSEWDI 625 (784)
Q Consensus 599 tS~wLpv~p~~vf~FLrd~~~R~eWd~ 625 (784)
.++-++.||..||++|.|..+..+|.-
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~ 29 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSP 29 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCc
Confidence 466788999999999999999999963
No 161
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=26.11 E-value=89 Score=29.54 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=13.5
Q ss_pred hhhhhhHhhHHHHHHHhhhhh
Q 003954 200 ELQQLRIENARLKDELGRICI 220 (784)
Q Consensus 200 e~q~L~~eNa~Lk~el~r~~~ 220 (784)
|.++|++||+.|++-|.+...
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445677777777777665543
No 162
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=25.24 E-value=5.2e+02 Score=23.50 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=31.7
Q ss_pred eEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHH
Q 003954 463 VVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (784)
Q Consensus 463 lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 515 (784)
-+++.++ .++|+|..+....... -+.+..+..-|..+.+..|+.+||
T Consensus 92 ~~~~~~~-~T~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 92 TLEETGG-GTRLTLTHSGFPEEDA-----EQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred EEEECCC-CEEEEEEEEccChHhH-----HHHHHhCHhhHHHHHHHHHHHHhh
Confidence 3677775 4999998766543211 234555666678888888888887
No 163
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.96 E-value=1.4e+02 Score=35.03 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=23.1
Q ss_pred HHhhhhHHHHHhhHHHHHhHHHHHHhcCC
Q 003954 153 MERHENIILRQEHDKLRAENEMLKDAMKN 181 (784)
Q Consensus 153 ~~~~e~~~l~~e~~~l~~en~~l~ea~~~ 181 (784)
+.|.+-..+.++|++|++||++|+++..+
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQS 98 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35667788899999999999999876643
No 164
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.87 E-value=3.3e+02 Score=33.79 Aligned_cols=18 Identities=44% Similarity=0.674 Sum_probs=8.1
Q ss_pred HHHhhHHHHHhHHHHHHh
Q 003954 161 LRQEHDKLRAENEMLKDA 178 (784)
Q Consensus 161 l~~e~~~l~~en~~l~ea 178 (784)
++.+...++.+|+.|+..
T Consensus 458 lk~eL~qlr~ene~Lq~K 475 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNK 475 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 165
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=24.76 E-value=1.5e+02 Score=25.83 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=14.3
Q ss_pred hhhhhhhHhhHHHHHHHhhh
Q 003954 199 YELQQLRIENARLKDELGRI 218 (784)
Q Consensus 199 ~e~q~L~~eNa~Lk~el~r~ 218 (784)
.+..+|+.||..|++|++..
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45567888888888887643
No 166
>PF15392 Joubert: Joubert syndrome-associated
Probab=24.29 E-value=3.8e+02 Score=30.03 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCCCCCCCCCC-CCCCCCchhhhhhhHhhHHH
Q 003954 172 NEMLKDAMKNPTCNNCGGPA-VPGSVSNYELQQLRIENARL 211 (784)
Q Consensus 172 n~~l~ea~~~~~C~~Cg~p~-~~~~~~~~e~q~L~~eNa~L 211 (784)
.+++++.=.++.|+.-...- +.-++ ...|+++.|..+|
T Consensus 78 laEkR~qEH~PF~p~~~p~~~TSreI--rl~QK~K~EKdRl 116 (329)
T PF15392_consen 78 LAEKREQEHKPFCPRSNPFYMTSREI--RLRQKMKEEKDRL 116 (329)
T ss_pred HHHHHhhccCCCCCCCCCCcccHHHH--HHHHHHHHHHHHH
Confidence 34566666778887665321 11121 2344555665553
No 167
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=22.36 E-value=1.1e+02 Score=33.24 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=0.0
Q ss_pred chhhHHHHHHHhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhhhhhhh
Q 003954 144 NRRTQMKTQMERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICILAN 223 (784)
Q Consensus 144 NRRak~Kr~~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~~~~~~ 223 (784)
++.....+.++++.|...+...++-+.....++... .++. .|.+.|+.++..|++|+..+..+..
T Consensus 189 ~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~--------------~~le-ken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 189 EKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRV--------------AELE-KENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred hcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHH--------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cc
Q 003954 224 KF 225 (784)
Q Consensus 224 ~~ 225 (784)
.+
T Consensus 254 ~~ 255 (269)
T KOG3119|consen 254 QL 255 (269)
T ss_pred hh
No 168
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=22.18 E-value=72 Score=29.22 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=23.7
Q ss_pred EeeecccChHHHHHhhhccccchhhh
Q 003954 599 TTVWLPMTRQRLFDFMRDERMRSEWD 624 (784)
Q Consensus 599 tS~wLpv~p~~vf~FLrd~~~R~eWd 624 (784)
.+.-++.||+.||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~ 29 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWN 29 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccC
Confidence 46678899999999999999999998
No 169
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=22.05 E-value=78 Score=32.87 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhCCCcc
Q 003954 100 RHTPHQIQELESFFKEC--PHPDEKQRSELSRRLGLESK 136 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~~~--~~Ps~~~R~eLA~~LgLs~r 136 (784)
.+|..|++.|...|+.- -+|-...-.+||+++|+++.
T Consensus 155 ~LTdrQ~~vL~~A~~~GYFd~PR~~~l~dLA~~lGISks 193 (215)
T COG3413 155 DLTDRQLEVLRLAYKMGYFDYPRRVSLKDLAKELGISKS 193 (215)
T ss_pred cCCHHHHHHHHHHHHcCCCCCCccCCHHHHHHHhCCCHH
Confidence 69999999999999864 34444445899999999974
No 170
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.04 E-value=1.3e+02 Score=28.57 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=14.0
Q ss_pred hhhhhhHhhHHHHHHHhhh
Q 003954 200 ELQQLRIENARLKDELGRI 218 (784)
Q Consensus 200 e~q~L~~eNa~Lk~el~r~ 218 (784)
|..+|++||+.||+.|.++
T Consensus 37 EN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 37 ENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4557888888888877765
No 171
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=22.02 E-value=18 Score=43.01 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHH-HHHHhcCCCCCHHHHHHHHHHhC-------CCcceEEeeccchhhHHHHHH
Q 003954 97 KYHRHTPHQIQEL-ESFFKECPHPDEKQRSELSRRLG-------LESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 97 ~RtrfT~~Ql~~L-E~~F~~~~~Ps~~~R~eLA~~Lg-------Ls~rQVkvWFQNRRak~Kr~~ 153 (784)
++-+|-.+|..++ +..|-+++.+......+--+++. .+.+-|++||+|||++.|+.+
T Consensus 694 ~~~k~f~~~~~ev~~~w~~k~~s~s~~~v~eYkee~~~~~~~e~~~~kn~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 694 TIIKFFQNQRYEVKHHWKLKTRSGSWVDVAEYKEEELLMPYEEKFESKNVQFWFKVRREEEKRLK 758 (769)
T ss_pred HHHHhhhcceeecchhheecccCchhHHHHHhhHHhhcchhhhhhhhcchHHHHHHHHHHHhhhh
Confidence 3333444443333 44566777777665555444443 346779999999999988754
No 172
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=21.90 E-value=77 Score=21.26 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEee
Q 003954 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFW 141 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvW 141 (784)
.++.++...+...|... + ...++++++|++...|..|
T Consensus 5 ~~~~~~~~~i~~~~~~~-~----s~~~ia~~~~is~~tv~~~ 41 (42)
T cd00569 5 KLTPEQIEEARRLLAAG-E----SVAEIARRLGVSRSTLYRY 41 (42)
T ss_pred cCCHHHHHHHHHHHHcC-C----CHHHHHHHHCCCHHHHHHh
Confidence 35667776666667533 2 4567899999888766655
No 173
>PRK00118 putative DNA-binding protein; Validated
Probab=21.82 E-value=1.5e+02 Score=27.86 Aligned_cols=47 Identities=9% Similarity=0.124 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
.+++.|.+.+...|... ..-.++|+.+|+++.-|+.|...-|.+.|.
T Consensus 17 ~L~ekqRevl~L~y~eg-----~S~~EIAe~lGIS~~TV~r~L~RArkkLr~ 63 (104)
T PRK00118 17 LLTEKQRNYMELYYLDD-----YSLGEIAEEFNVSRQAVYDNIKRTEKLLED 63 (104)
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 45677777776666543 335679999999999999887755555554
No 174
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=20.77 E-value=2.5e+02 Score=27.96 Aligned_cols=55 Identities=27% Similarity=0.399 Sum_probs=29.0
Q ss_pred EeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeecCCeEEEEEEeccCC
Q 003954 383 TTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTN 443 (784)
Q Consensus 383 t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~ 443 (784)
.++++ +....+..+|.--.+.+++....- .|..=.|-|+. .+|.|-|+||.++++
T Consensus 86 ~v~~~-~~~~~~~~~~~~~~V~t~i~~~~g-~~i~v~y~l~~----~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 86 SVEVL-SEPPNGRKGGNRAIVRTEIISKDG-QPIPVDYRLRK----KDGKWKIYDVIIEGV 140 (170)
T ss_dssp EEEE-------S-TT-SEEEEEEEEEET-T-EEEEEEEEEEE----ETTEEEEEEEEETTE
T ss_pred eEEEE-eccCCCCCCCCEEEEEEEEEcCCC-CcEEEEEEEEE----cCCCeEEEEEEEcce
Confidence 45555 444444323445566666666654 33333344443 789999999999975
No 175
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=20.60 E-value=2.5e+02 Score=25.68 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchh
Q 003954 97 KYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRR 146 (784)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRR 146 (784)
.++.|+.+++..|+.... .+.+|++-.+++-+++...
T Consensus 35 g~R~y~~~di~~l~~i~~-------------lr~~g~~l~~i~~~~~~~~ 71 (103)
T cd01106 35 GYRLYTEEDLERLQQILF-------------LKELGFSLKEIKELLKDPS 71 (103)
T ss_pred CceeeCHHHHHHHHHHHH-------------HHHcCCCHHHHHHHHHcCc
Confidence 345699999999876542 2445666666666665543
No 176
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.56 E-value=1.4e+02 Score=28.03 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=0.0
Q ss_pred eccch--hhHHHHHHHhhhhHHHHHhhHHHHHhHHHHHHhc
Q 003954 141 WFQNR--RTQMKTQMERHENIILRQEHDKLRAENEMLKDAM 179 (784)
Q Consensus 141 WFQNR--Rak~Kr~~~~~e~~~l~~e~~~l~~en~~l~ea~ 179 (784)
||++. +.-.+ .+++...+++++++++++|+.|++++
T Consensus 20 ~~g~~G~~~~~~---l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 20 WFGKNGILDYWR---VNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred hccCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
No 177
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=20.44 E-value=98 Score=26.38 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=35.2
Q ss_pred HHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhhhh
Q 003954 160 ILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICI 220 (784)
Q Consensus 160 ~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~~~ 220 (784)
..+-...+|+.|++.+-.++...+...|. . ++.|+++...-.||+++.++..
T Consensus 8 eirl~~arLrqeH~D~DaaInAmi~~~cD--------~-L~iqRmKkKKLAlKDki~~lED 59 (67)
T COG5481 8 EIRLTLARLRQEHADFDAAINAMIATGCD--------A-LRIQRMKKKKLALKDKITKLED 59 (67)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhCCc--------H-HHHHHHHHHHHhHHHHHHHHHH
Confidence 34555566666666666666555555564 2 7888888888889999987754
No 178
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=20.14 E-value=48 Score=26.44 Aligned_cols=8 Identities=50% Similarity=1.099 Sum_probs=6.3
Q ss_pred hhHHHHHH
Q 003954 501 FGAPKWVA 508 (784)
Q Consensus 501 fGA~rwla 508 (784)
-||+|||+
T Consensus 38 ~garrwl~ 45 (49)
T PF07151_consen 38 SGARRWLA 45 (49)
T ss_pred hhhhHHHh
Confidence 38999986
No 179
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.06 E-value=85 Score=35.23 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=45.2
Q ss_pred eccchhhHHHHHHHhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhhhh
Q 003954 141 WFQNRRTQMKTQMERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICI 220 (784)
Q Consensus 141 WFQNRRak~Kr~~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~~~ 220 (784)
||=--|-+.| +.+-...+.|+....++.+.|+-|++--. ...+.. .|.++|+..|.+|+.||-++..
T Consensus 54 wff~i~~re~-qlk~aa~~llq~kirk~~e~~eglr~i~e-----------s~~e~q-~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 54 WFFAIGRREK-QLKTAAGQLLQTKIRKITEKDEGLRKIRE-----------SVEERQ-QESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHH-----------HHHHHH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 6644333333 33455566777777777777765553211 002223 5677899999999999988877
Q ss_pred hhhcccC
Q 003954 221 LANKFLG 227 (784)
Q Consensus 221 ~~~~~~~ 227 (784)
+..+.-+
T Consensus 121 vf~k~k~ 127 (401)
T PF06785_consen 121 VFMKTKG 127 (401)
T ss_pred HHHHhcc
Confidence 7665433
No 180
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.01 E-value=69 Score=30.23 Aligned_cols=26 Identities=15% Similarity=0.278 Sum_probs=23.2
Q ss_pred EeeecccChHHHHHhhhccccchhhh
Q 003954 599 TTVWLPMTRQRLFDFMRDERMRSEWD 624 (784)
Q Consensus 599 tS~wLpv~p~~vf~FLrd~~~R~eWd 624 (784)
.|+.++.|++.||+|+.|...-.+|.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~ 28 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLT 28 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcC
Confidence 57889999999999999988887776
Done!