Query 003954
Match_columns 784
No_of_seqs 382 out of 1827
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 1.7E-19 5.8E-24 184.7 17.4 202 285-517 20-229 (231)
2 2dmt_A Homeobox protein BARH-l 99.7 6E-18 2E-22 147.3 4.5 64 90-153 13-76 (80)
3 2da3_A Alpha-fetoprotein enhan 99.7 5E-18 1.7E-22 147.3 3.4 63 91-153 14-76 (80)
4 2kt0_A Nanog, homeobox protein 99.7 4.9E-18 1.7E-22 148.9 3.0 64 90-153 18-81 (84)
5 3a01_A Homeodomain-containing 99.7 8.6E-18 3E-22 150.5 4.5 75 91-165 14-88 (93)
6 1nk2_P Homeobox protein VND; h 99.7 1.8E-17 6.2E-22 143.2 5.1 66 91-156 6-71 (77)
7 2cue_A Paired box protein PAX6 99.7 2.3E-17 7.8E-22 143.6 5.5 65 92-156 5-69 (80)
8 2dmq_A LIM/homeobox protein LH 99.7 1.6E-17 5.4E-22 144.3 4.2 65 92-156 5-69 (80)
9 1wh5_A ZF-HD homeobox family p 99.7 1E-17 3.5E-22 146.1 3.0 61 91-151 14-78 (80)
10 1fjl_A Paired protein; DNA-bin 99.7 2.3E-17 7.8E-22 143.8 4.2 64 91-154 15-78 (81)
11 2dms_A Homeobox protein OTX2; 99.7 1.4E-17 4.8E-22 144.9 2.7 65 91-155 4-68 (80)
12 1wh7_A ZF-HD homeobox family p 99.7 1.7E-17 5.7E-22 144.9 2.7 60 91-151 14-78 (80)
13 2cra_A Homeobox protein HOX-B1 99.7 1.8E-17 6E-22 140.7 2.7 63 91-153 4-66 (70)
14 2dmu_A Homeobox protein goosec 99.7 3.3E-17 1.1E-21 138.9 4.2 62 92-153 5-66 (70)
15 2h1k_A IPF-1, pancreatic and d 99.7 2.3E-17 7.9E-22 137.1 3.1 61 93-153 2-62 (63)
16 1puf_A HOX-1.7, homeobox prote 99.7 6.3E-17 2.2E-21 139.8 5.9 65 91-155 10-74 (77)
17 2vi6_A Homeobox protein nanog; 99.7 1.2E-17 4E-22 138.4 1.0 60 93-152 2-61 (62)
18 2e1o_A Homeobox protein PRH; D 99.7 4.7E-17 1.6E-21 138.1 4.6 62 92-153 5-66 (70)
19 1zq3_P PRD-4, homeotic bicoid 99.6 4.4E-17 1.5E-21 137.5 3.6 63 94-156 2-64 (68)
20 2da2_A Alpha-fetoprotein enhan 99.6 3.5E-17 1.2E-21 138.6 3.0 63 91-153 4-66 (70)
21 2hdd_A Protein (engrailed home 99.6 3E-17 1E-21 135.5 2.5 58 94-151 3-60 (61)
22 2djn_A Homeobox protein DLX-5; 99.6 3.1E-17 1E-21 139.2 2.4 62 91-152 4-65 (70)
23 2da1_A Alpha-fetoprotein enhan 99.6 4.1E-17 1.4E-21 138.2 2.9 63 91-153 4-66 (70)
24 1ig7_A Homeotic protein MSX-1; 99.6 5.9E-17 2E-21 132.2 3.5 57 95-151 1-57 (58)
25 1ahd_P Antennapedia protein mu 99.6 4E-17 1.4E-21 137.9 2.5 61 94-154 2-62 (68)
26 1yz8_P Pituitary homeobox 2; D 99.6 3.6E-17 1.2E-21 138.0 1.5 63 93-155 2-64 (68)
27 1ftt_A TTF-1 HD, thyroid trans 99.6 5.9E-17 2E-21 136.7 2.4 62 94-155 2-63 (68)
28 2l7z_A Homeobox protein HOX-A1 99.6 1E-16 3.5E-21 137.2 3.7 62 92-153 5-66 (73)
29 2da4_A Hypothetical protein DK 99.6 7E-17 2.4E-21 140.4 2.6 63 91-153 5-71 (80)
30 1jgg_A Segmentation protein EV 99.6 8.3E-17 2.8E-21 132.4 2.7 58 95-152 2-59 (60)
31 1b8i_A Ultrabithorax, protein 99.6 6E-17 2E-21 141.4 1.8 62 92-153 18-79 (81)
32 1bw5_A ISL-1HD, insulin gene e 99.6 6.9E-17 2.3E-21 135.4 2.0 60 93-152 2-61 (66)
33 2r5y_A Homeotic protein sex co 99.6 7E-17 2.4E-21 143.0 1.9 62 92-153 26-87 (88)
34 3nar_A ZHX1, zinc fingers and 99.6 1.1E-16 3.7E-21 144.1 2.7 65 91-155 22-86 (96)
35 3rkq_A Homeobox protein NKX-2. 99.6 1.7E-16 5.8E-21 129.1 3.2 57 94-150 2-58 (58)
36 2m0c_A Homeobox protein arista 99.6 2.1E-16 7.1E-21 135.3 3.6 64 91-154 6-69 (75)
37 1akh_A Protein (mating-type pr 99.6 1.2E-16 4E-21 131.8 1.8 59 92-150 3-61 (61)
38 2hi3_A Homeodomain-only protei 99.6 2.6E-16 8.9E-21 134.6 4.0 59 95-153 3-62 (73)
39 1uhs_A HOP, homeodomain only p 99.6 2.6E-16 9E-21 134.1 4.0 59 95-153 2-61 (72)
40 2da5_A Zinc fingers and homeob 99.6 1.5E-16 5.1E-21 136.9 2.3 60 96-155 9-68 (75)
41 2k40_A Homeobox expressed in E 99.6 1E-16 3.6E-21 134.7 1.3 60 95-154 2-61 (67)
42 3a02_A Homeobox protein arista 99.6 1.5E-16 5.1E-21 130.9 2.1 57 97-153 2-58 (60)
43 3a03_A T-cell leukemia homeobo 99.6 2.5E-16 8.6E-21 128.0 2.9 54 99-152 2-55 (56)
44 1b72_A Protein (homeobox prote 99.6 2.6E-16 8.9E-21 141.8 3.2 63 93-155 33-95 (97)
45 2cuf_A FLJ21616 protein; homeo 99.6 4.1E-16 1.4E-20 140.0 3.9 65 91-155 4-83 (95)
46 2ecc_A Homeobox and leucine zi 99.6 3.9E-16 1.3E-20 134.7 3.4 58 97-154 6-63 (76)
47 1x2n_A Homeobox protein pknox1 99.6 4.7E-16 1.6E-20 132.8 3.2 64 91-154 4-70 (73)
48 2ly9_A Zinc fingers and homeob 99.6 4.6E-16 1.6E-20 133.2 2.2 61 94-154 6-66 (74)
49 2ecb_A Zinc fingers and homeob 99.6 3.4E-16 1.2E-20 139.2 0.8 56 99-154 16-71 (89)
50 2dn0_A Zinc fingers and homeob 99.6 6.8E-16 2.3E-20 133.0 2.3 59 95-153 9-67 (76)
51 2dmn_A Homeobox protein TGIF2L 99.5 1.5E-15 5E-20 133.3 3.6 65 91-155 4-71 (83)
52 1puf_B PRE-B-cell leukemia tra 99.5 1.2E-15 4.2E-20 130.3 2.9 61 95-155 2-65 (73)
53 2da6_A Hepatocyte nuclear fact 99.5 2.7E-15 9.4E-20 136.1 5.1 65 91-155 3-88 (102)
54 1e3o_C Octamer-binding transcr 99.5 8.6E-16 2.9E-20 150.5 1.6 62 91-152 98-159 (160)
55 1au7_A Protein PIT-1, GHF-1; c 99.5 8.7E-16 3E-20 148.4 1.5 62 91-152 84-145 (146)
56 2cqx_A LAG1 longevity assuranc 99.5 6.5E-16 2.2E-20 132.2 0.3 58 95-152 9-67 (72)
57 1b72_B Protein (PBX1); homeodo 99.5 2.2E-15 7.6E-20 132.8 3.6 61 95-155 2-65 (87)
58 2dmp_A Zinc fingers and homeob 99.5 2E-15 6.7E-20 134.2 3.2 58 97-154 16-73 (89)
59 1du6_A PBX1, homeobox protein 99.5 1.2E-15 4E-20 127.1 1.4 58 94-151 3-63 (64)
60 1k61_A Mating-type protein alp 99.5 2E-15 6.9E-20 124.1 2.5 55 97-151 1-58 (60)
61 1wi3_A DNA-binding protein SAT 99.5 2.8E-15 9.4E-20 125.7 3.3 60 91-150 4-64 (71)
62 2xsd_C POU domain, class 3, tr 99.5 9.6E-16 3.3E-20 150.8 0.6 64 91-154 96-159 (164)
63 1mnm_C Protein (MAT alpha-2 tr 99.5 3.7E-15 1.3E-19 131.6 3.2 58 93-150 26-86 (87)
64 3d1n_I POU domain, class 6, tr 99.5 4.4E-15 1.5E-19 144.0 3.3 61 91-151 90-150 (151)
65 1lfb_A Liver transcription fac 99.5 1.7E-15 5.8E-20 137.3 0.0 64 91-154 6-90 (99)
66 1le8_B Mating-type protein alp 99.5 4.1E-15 1.4E-19 130.4 2.4 60 94-153 2-64 (83)
67 2l9r_A Homeobox protein NKX-3. 99.5 1.4E-15 4.9E-20 129.1 -0.7 57 99-155 9-65 (69)
68 3nau_A Zinc fingers and homeob 99.5 5.1E-15 1.8E-19 124.0 2.5 53 101-153 11-63 (66)
69 1x2m_A LAG1 longevity assuranc 99.5 5.4E-15 1.9E-19 123.6 0.4 49 103-151 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.5 1.3E-14 4.6E-19 141.3 2.4 61 92-152 94-154 (155)
71 2e19_A Transcription factor 8; 99.4 1.4E-14 4.7E-19 121.2 1.2 53 99-151 8-60 (64)
72 2d5v_A Hepatocyte nuclear fact 99.4 1.9E-14 6.6E-19 141.1 1.2 63 91-153 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.3 1.3E-13 4.3E-18 116.3 1.1 57 100-156 4-63 (67)
74 1ic8_A Hepatocyte nuclear fact 99.3 2.5E-13 8.5E-18 136.9 -0.4 61 91-151 112-193 (194)
75 1em2_A MLN64 protein; beta bar 99.3 1.3E-10 4.4E-15 118.7 17.4 200 286-517 20-226 (229)
76 3p0l_A Steroidogenic acute reg 99.2 5.3E-11 1.8E-15 121.1 14.1 194 288-515 11-213 (221)
77 2pso_A STAR-related lipid tran 99.2 2.9E-11 9.9E-16 125.1 11.3 173 290-491 31-206 (237)
78 2h8r_A Hepatocyte nuclear fact 99.1 7.3E-12 2.5E-16 127.8 1.9 60 90-149 138-218 (221)
79 2lk2_A Homeobox protein TGIF1; 99.1 2.1E-11 7.2E-16 108.1 3.0 59 98-156 9-70 (89)
80 2da7_A Zinc finger homeobox pr 99.1 3.4E-11 1.2E-15 101.6 1.7 46 103-148 14-59 (71)
81 1mh3_A Maltose binding-A1 home 99.0 2.9E-11 1E-15 132.2 -1.2 56 95-150 366-421 (421)
82 1ln1_A PC-TP, phosphatidylchol 99.0 4.7E-09 1.6E-13 105.3 13.4 152 345-517 52-210 (214)
83 1jss_A Stard4, cholesterol-reg 99.0 3.6E-09 1.2E-13 107.9 12.5 191 288-515 25-222 (224)
84 3fo5_A Thioesterase, adipose a 98.8 1.6E-08 5.4E-13 106.2 11.5 122 348-482 91-216 (258)
85 3qsz_A STAR-related lipid tran 98.5 7.6E-07 2.6E-11 87.7 13.4 152 346-516 28-179 (189)
86 2e3n_A Lipid-transfer protein 98.4 1.9E-06 6.3E-11 89.3 13.1 199 289-517 24-247 (255)
87 2nzz_A Penetratin conjugated G 98.3 2.5E-08 8.5E-13 74.4 -2.2 21 136-156 1-21 (37)
88 2r55_A STAR-related lipid tran 97.5 0.0063 2.1E-07 61.6 20.0 199 535-783 18-228 (231)
89 3qsz_A STAR-related lipid tran 97.2 0.014 4.7E-07 57.1 17.5 171 562-782 3-178 (189)
90 1jss_A Stard4, cholesterol-reg 96.9 0.021 7.3E-07 57.7 15.9 176 561-783 42-223 (224)
91 1ln1_A PC-TP, phosphatidylchol 96.8 0.039 1.3E-06 54.8 16.6 173 560-783 26-209 (214)
92 3p0l_A Steroidogenic acute reg 96.6 0.11 3.6E-06 52.3 18.8 193 539-782 10-213 (221)
93 2pso_A STAR-related lipid tran 96.5 0.071 2.4E-06 54.7 16.5 175 560-783 48-227 (237)
94 1em2_A MLN64 protein; beta bar 96.2 0.18 6.3E-06 50.7 17.3 196 539-783 21-225 (229)
95 3fo5_A Thioesterase, adipose a 94.7 0.83 2.8E-05 47.6 16.4 181 502-712 9-201 (258)
96 2d4r_A Hypothetical protein TT 94.3 0.26 9E-06 44.1 10.3 140 349-517 6-145 (147)
97 2e3n_A Lipid-transfer protein 93.0 1.3 4.5E-05 45.2 14.2 198 541-781 28-244 (255)
98 3tfz_A Cyclase; helix-GRIP, BE 86.3 8.6 0.00029 36.6 12.8 122 348-495 8-129 (172)
99 3tl1_A WHIE ORF VI, polyketide 85.3 8.3 0.00028 36.8 12.0 110 348-485 6-117 (159)
100 2jn6_A Protein CGL2762, transp 83.7 0.17 5.8E-06 44.2 -0.7 43 99-144 4-46 (97)
101 2ys9_A Homeobox and leucine zi 81.3 0.41 1.4E-05 40.4 0.8 38 106-143 18-55 (70)
102 3tvq_A Multifunctional cyclase 81.2 18 0.00061 34.8 12.6 145 348-520 6-150 (169)
103 3p9v_A Uncharacterized protein 79.7 15 0.00051 34.6 11.4 110 348-483 10-119 (161)
104 1t17_A Conserved hypothetical 77.2 5.3 0.00018 36.7 7.2 141 348-517 5-145 (148)
105 2wt7_B Transcription factor MA 69.9 5.6 0.00019 35.1 5.0 69 132-222 17-85 (90)
106 2j5u_A MREC protein; bacterial 68.5 2.3 7.9E-05 44.2 2.7 38 160-216 23-60 (255)
107 1ci6_A Transcription factor AT 55.8 30 0.001 28.3 6.6 41 154-216 21-61 (63)
108 1t2k_D Cyclic-AMP-dependent tr 55.6 29 0.001 27.9 6.5 40 154-215 20-59 (61)
109 2jee_A YIIU; FTSZ, septum, coi 55.0 19 0.00065 31.2 5.5 24 201-224 50-77 (81)
110 1hjb_A Ccaat/enhancer binding 52.9 25 0.00087 30.7 6.0 18 159-176 39-56 (87)
111 1gd2_E Transcription factor PA 48.2 35 0.0012 28.6 5.9 17 200-216 51-67 (70)
112 2pcs_A Conserved protein; stru 47.3 1.7E+02 0.0057 26.6 14.0 118 350-495 8-127 (162)
113 3a5t_A Transcription factor MA 45.9 3.6 0.00012 37.5 -0.6 23 199-221 72-94 (107)
114 2elh_A CG11849-PA, LD40883P; s 45.4 13 0.00044 31.6 3.0 45 93-142 15-59 (87)
115 3ra3_B P2F; coiled coil domain 44.3 12 0.0004 25.3 1.9 17 202-218 3-19 (28)
116 2glo_A Brinker CG9653-PA; prot 43.6 7.8 0.00027 30.5 1.2 45 98-143 3-47 (59)
117 2qpv_A Uncharacterized protein 43.5 16 0.00054 34.9 3.6 30 596-625 28-57 (156)
118 1hlv_A CENP-B, major centromer 38.6 15 0.00052 33.0 2.5 48 97-147 4-51 (131)
119 1jnm_A Proto-oncogene C-JUN; B 38.6 35 0.0012 27.6 4.4 23 154-176 20-42 (62)
120 2d4r_A Hypothetical protein TT 36.7 17 0.00057 31.9 2.4 29 597-625 4-32 (147)
121 3he5_B Synzip2; heterodimeric 36.6 73 0.0025 24.3 5.4 22 199-220 24-45 (52)
122 1gu4_A CAAT/enhancer binding p 36.3 52 0.0018 28.2 5.3 16 161-176 41-56 (78)
123 2rgt_A Fusion of LIM/homeobox 35.7 1.4 4.7E-05 42.5 -5.3 31 92-122 134-164 (169)
124 3s9g_A Protein hexim1; cyclin 34.2 63 0.0022 28.9 5.5 56 153-216 34-89 (104)
125 1jko_C HIN recombinase, DNA-in 32.0 12 0.00041 27.5 0.5 43 100-147 5-47 (52)
126 2pcs_A Conserved protein; stru 31.8 18 0.00061 33.4 1.8 28 597-624 5-32 (162)
127 2ns9_A Hypothetical protein AP 31.0 27 0.00093 31.7 2.9 29 596-624 14-42 (157)
128 3hug_A RNA polymerase sigma fa 30.6 19 0.00064 30.7 1.6 47 100-151 37-83 (92)
129 2wt7_A Proto-oncogene protein 30.3 1.3E+02 0.0043 24.4 6.5 26 154-179 21-46 (63)
130 3ggn_A Uncharacterized protein 29.5 30 0.001 32.1 2.9 30 596-625 5-34 (155)
131 1l8d_A DNA double-strand break 29.2 30 0.001 30.8 2.8 12 181-192 47-58 (112)
132 1t17_A Conserved hypothetical 28.4 28 0.00097 31.7 2.5 31 597-627 4-34 (148)
133 2leq_A Uncharacterized protein 27.0 38 0.0013 30.0 3.1 28 596-623 6-33 (146)
134 3m91_A Proteasome-associated A 26.6 1E+02 0.0035 24.4 5.0 38 160-219 13-50 (51)
135 3q6a_A Uncharacterized protein 25.6 41 0.0014 30.1 3.1 27 598-624 4-30 (135)
136 1x53_A Activator of 90 kDa hea 25.0 42 0.0014 30.5 3.0 28 597-624 13-40 (145)
137 2ns9_A Hypothetical protein AP 24.2 3.8E+02 0.013 23.8 10.2 28 350-377 18-45 (157)
138 1s7o_A Hypothetical UPF0122 pr 23.9 53 0.0018 29.5 3.4 49 100-153 22-70 (113)
139 3tfz_A Cyclase; helix-GRIP, BE 23.9 46 0.0016 31.4 3.2 29 596-624 6-34 (172)
140 1tc3_C Protein (TC3 transposas 22.9 29 0.00099 24.8 1.2 40 100-144 5-44 (51)
141 3i5g_B Myosin regulatory light 22.8 1E+02 0.0034 28.3 5.2 40 97-136 6-50 (153)
142 3p51_A Uncharacterized protein 22.7 1.8E+02 0.0063 27.3 7.2 123 349-500 6-134 (160)
143 1xsv_A Hypothetical UPF0122 pr 22.1 60 0.0021 29.0 3.4 49 100-153 25-73 (113)
144 3mzy_A RNA polymerase sigma-H 22.0 41 0.0014 30.3 2.4 46 100-151 109-154 (164)
145 2yy0_A C-MYC-binding protein; 21.6 1E+02 0.0035 24.4 4.2 12 204-215 24-35 (53)
146 1je8_A Nitrate/nitrite respons 20.9 30 0.001 28.9 1.1 45 96-146 17-61 (82)
147 2o8x_A Probable RNA polymerase 20.1 23 0.0008 27.9 0.2 44 100-148 15-58 (70)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=184.68 Aligned_cols=202 Identities=12% Similarity=0.138 Sum_probs=157.4
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCceEecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHh
Q 003954 285 DRNMLIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETM 364 (784)
Q Consensus 285 ~~~~~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~l 364 (784)
+++.++++|++||+||+++++. +..|....+. ++.+.|.+.. .+..+.+-|..++|.+.+.+|+++|
T Consensus 20 ~~~~y~~~a~~~~~~~l~~~~~-~~~W~~~~~~--------~gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 20 FQSMAAQMSEAVAEKMLQYRRD-TAGWKICREG--------NGVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC-CSSCEEEECC--------SSEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcC-CCCCEEEEeC--------CCEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHH
Confidence 4788999999999999999975 4789876432 1223332211 1223578899999999999999999
Q ss_pred cC-----hhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeee-eeecccccccceeeEEEEeeeeecCCeEEEEEE
Q 003954 365 MD-----ANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVA-EFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDV 438 (784)
Q Consensus 365 mD-----~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~a-el~~~SpLvp~Re~~fLRyckq~~~g~w~VvDv 438 (784)
|+ +.+|-+.| ..++.++.| . +.-.++|. ....++++|++|||.++||+++.++|.|+|+.+
T Consensus 87 ~~~d~~~r~~Wd~~~----~~~~vle~i-~--------~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~ 153 (231)
T 2r55_A 87 KPAVGGLRVKWDENV----TGFEIIQSI-T--------DTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNAT 153 (231)
T ss_dssp CC--CCSHHHHCTTC----SEEEEEEEC-S--------SSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEE
T ss_pred HhhCcchhhhhcccc----ceeEEEEEc-C--------CCEEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEE
Confidence 77 88997763 468888887 3 12234442 223456799999999999999999999999999
Q ss_pred eccCCCCCCCCCCccceeecCCcceEeeCC--CCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHHH
Q 003954 439 SIDTNREGLSADPFQTYRRLPSGFVVQDVP--NNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCEC 516 (784)
Q Consensus 439 S~d~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~cer 516 (784)
|++... .+....++|++.++|||+||+++ +|.|+|||+.|++..-+ +| +.++++.+..++.+|++.|+++|+.
T Consensus 154 Sv~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~ 228 (231)
T 2r55_A 154 HVEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQ 228 (231)
T ss_dssp ECCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred eccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 998532 22234789999999999999998 78999999999998876 44 5788899999999999999999985
Q ss_pred H
Q 003954 517 L 517 (784)
Q Consensus 517 l 517 (784)
+
T Consensus 229 ~ 229 (231)
T 2r55_A 229 F 229 (231)
T ss_dssp G
T ss_pred h
Confidence 3
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6e-18 Score=147.26 Aligned_cols=64 Identities=28% Similarity=0.401 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 90 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
..+++||.|+.||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+..
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3556788999999999999999999999999999999999999999999999999999999743
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=5e-18 Score=147.28 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.+++||.|++||.+|+..||..|..++||+..+|++||.+|||+++||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 456788999999999999999999999999999999999999999999999999999999754
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=4.9e-18 Score=148.88 Aligned_cols=64 Identities=30% Similarity=0.315 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 90 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
..+++||.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+.+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3557788999999999999999999999999999999999999999999999999999999754
No 5
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=8.6e-18 Score=150.53 Aligned_cols=75 Identities=32% Similarity=0.445 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhhhhHHHHHhh
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHENIILRQEH 165 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~ 165 (784)
++++||+|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|++..+.+.....+.+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~ 88 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAAN 88 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC---------
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999988776555544443
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.68 E-value=1.8e-17 Score=143.21 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhh
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (784)
++++||.|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+.+...
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 456788899999999999999999999999999999999999999999999999999999876543
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=2.3e-17 Score=143.57 Aligned_cols=65 Identities=26% Similarity=0.474 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhh
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (784)
.++||+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|++.+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 35688899999999999999999999999999999999999999999999999999999876543
No 8
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-17 Score=144.32 Aligned_cols=65 Identities=26% Similarity=0.575 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhh
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (784)
.++||.|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|++..+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999876553
No 9
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.67 E-value=1e-17 Score=146.13 Aligned_cols=61 Identities=16% Similarity=0.355 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKE----CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~----~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
.+++||+|+.||.+|+..||+.|+. ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3467889999999999999999999 999999999999999999999999999999999874
No 10
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.67 E-value=2.3e-17 Score=143.84 Aligned_cols=64 Identities=31% Similarity=0.562 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
.+++||.|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999999998653
No 11
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.4e-17 Score=144.86 Aligned_cols=65 Identities=26% Similarity=0.544 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
+++.||+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 34678899999999999999999999999999999999999999999999999999999986543
No 12
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.66 E-value=1.7e-17 Score=144.87 Aligned_cols=60 Identities=18% Similarity=0.359 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKE-----CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~-----~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
.+++||+|+.||.+|+..|| .|.. ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678899999999999999 7999 999999999999999999999999999999999874
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=1.8e-17 Score=140.66 Aligned_cols=63 Identities=30% Similarity=0.450 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.++.||+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 345688899999999999999999999999999999999999999999999999999999753
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-17 Score=138.87 Aligned_cols=62 Identities=27% Similarity=0.574 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.+.||+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 35678899999999999999999999999999999999999999999999999999999754
No 15
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.66 E-value=2.3e-17 Score=137.13 Aligned_cols=61 Identities=34% Similarity=0.432 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
++||.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3578899999999999999999999999999999999999999999999999999999753
No 16
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.66 E-value=6.3e-17 Score=139.80 Aligned_cols=65 Identities=37% Similarity=0.455 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
.++.+|+|++||.+|+..||..|..++||+..+|++||.+|||+++||++||||||+|+|+..+.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 34568889999999999999999999999999999999999999999999999999999987654
No 17
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.65 E-value=1.2e-17 Score=138.40 Aligned_cols=60 Identities=32% Similarity=0.383 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHH
Q 003954 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (784)
++||.|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999999999975
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=4.7e-17 Score=138.05 Aligned_cols=62 Identities=31% Similarity=0.422 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.+.+|+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 35577889999999999999999999999999999999999999999999999999999864
No 19
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.65 E-value=4.4e-17 Score=137.54 Aligned_cols=63 Identities=33% Similarity=0.538 Sum_probs=59.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhh
Q 003954 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (784)
Q Consensus 94 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (784)
.||.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 478899999999999999999999999999999999999999999999999999999876554
No 20
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.65 E-value=3.5e-17 Score=138.64 Aligned_cols=63 Identities=29% Similarity=0.501 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
..++||+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 346688999999999999999999999999999999999999999999999999999999753
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.64 E-value=3e-17 Score=135.47 Aligned_cols=58 Identities=34% Similarity=0.604 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 94 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
+||.|+.||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999986
No 22
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-17 Score=139.18 Aligned_cols=62 Identities=31% Similarity=0.536 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (784)
..+.||+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 34668889999999999999999999999999999999999999999999999999999874
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-17 Score=138.20 Aligned_cols=63 Identities=30% Similarity=0.488 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
..+.||+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 346688999999999999999999999999999999999999999999999999999999754
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=5.9e-17 Score=132.23 Aligned_cols=57 Identities=35% Similarity=0.517 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
||+|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578899999999999999999999999999999999999999999999999999986
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.64 E-value=4e-17 Score=137.87 Aligned_cols=61 Identities=36% Similarity=0.484 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 94 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
+||.|++||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4788999999999999999999999999999999999999999999999999999998654
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.63 E-value=3.6e-17 Score=138.00 Aligned_cols=63 Identities=27% Similarity=0.534 Sum_probs=59.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
++||.|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|+.++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 468889999999999999999999999999999999999999999999999999999987643
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.63 E-value=5.9e-17 Score=136.75 Aligned_cols=62 Identities=34% Similarity=0.499 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 94 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
+||.|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 57889999999999999999999999999999999999999999999999999999986543
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.62 E-value=1e-16 Score=137.17 Aligned_cols=62 Identities=29% Similarity=0.422 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.+.||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 45688899999999999999999999999999999999999999999999999999999754
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7e-17 Score=140.44 Aligned_cols=63 Identities=10% Similarity=0.269 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKEC----PHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~----~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.+++||+|+.||.+|+..||..|+.+ +||+..+|++||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 34678889999999999999999999 9999999999999999999999999999999999743
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=8.3e-17 Score=132.43 Aligned_cols=58 Identities=34% Similarity=0.471 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHH
Q 003954 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (784)
||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6789999999999999999999999999999999999999999999999999999974
No 31
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.62 E-value=6e-17 Score=141.40 Aligned_cols=62 Identities=34% Similarity=0.511 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.++||.|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+||+.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 35678899999999999999999999999999999999999999999999999999999753
No 32
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.62 E-value=6.9e-17 Score=135.41 Aligned_cols=60 Identities=25% Similarity=0.495 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHH
Q 003954 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (784)
++||.|++||.+|+..||..|+.++||+..++++||.++||+++||++||||||+|+|++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 468899999999999999999999999999999999999999999999999999999864
No 33
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.62 E-value=7e-17 Score=142.97 Aligned_cols=62 Identities=34% Similarity=0.443 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
++.||+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|++.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 35688899999999999999999999999999999999999999999999999999999753
No 34
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.1e-16 Score=144.10 Aligned_cols=65 Identities=25% Similarity=0.397 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
....+|+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+.+.+
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 34567889999999999999999999999999999999999999999999999999999986543
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.61 E-value=1.7e-16 Score=129.06 Aligned_cols=57 Identities=39% Similarity=0.524 Sum_probs=54.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHH
Q 003954 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (784)
Q Consensus 94 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~K 150 (784)
+||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999986
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=2.1e-16 Score=135.31 Aligned_cols=64 Identities=28% Similarity=0.526 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
.++++|.|++||.+|+..||..|..++||+..+|++||.+|||+++||++||||||+|+|++..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4467888999999999999999999999999999999999999999999999999999997543
No 37
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.60 E-value=1.2e-16 Score=131.78 Aligned_cols=59 Identities=24% Similarity=0.462 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHH
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~K 150 (784)
.+++|+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 46688899999999999999999999999999999999999999999999999999976
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=2.6e-16 Score=134.60 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=56.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 95 KKKYHRHTPHQIQELESFFKE-CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
+++|++||.+|+..||..|+. ++||+..+|++||.++||+++||++||||||+|+|++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999995 99999999999999999999999999999999999865
No 39
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=2.6e-16 Score=134.14 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 95 KKKYHRHTPHQIQELESFFKE-CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.++|++||.+|+..||..|+. ++||+..+|++||.+|||+++||++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999999865
No 40
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-16 Score=136.93 Aligned_cols=60 Identities=27% Similarity=0.579 Sum_probs=55.6
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 96 KKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 96 R~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
++|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++.+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 456679999999999999999999999999999999999999999999999999986543
No 41
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.60 E-value=1e-16 Score=134.68 Aligned_cols=60 Identities=32% Similarity=0.543 Sum_probs=57.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
||+|++||.+|+..||..|..++||+..++++||.++||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 678999999999999999999999999999999999999999999999999999997654
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.60 E-value=1.5e-16 Score=130.91 Aligned_cols=57 Identities=37% Similarity=0.600 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 97 KYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.|++||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 468999999999999999999999999999999999999999999999999999864
No 43
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.59 E-value=2.5e-16 Score=127.95 Aligned_cols=54 Identities=33% Similarity=0.505 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHH
Q 003954 99 HRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (784)
Q Consensus 99 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (784)
+.||.+|+..||+.|+.++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=2.6e-16 Score=141.78 Aligned_cols=63 Identities=30% Similarity=0.418 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
+.+|+|+.||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|++...
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 567889999999999999999999999999999999999999999999999999999987543
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=4.1e-16 Score=139.99 Aligned_cols=65 Identities=26% Similarity=0.483 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------CCcceEEeeccchhhHHHHHHHh
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLG---------------LESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~Lg---------------Ls~rQVkvWFQNRRak~Kr~~~~ 155 (784)
.+++||.|+.||.+|+..||..|+.++||+..+|++||.+|| |+++||++||||||+|+|+++..
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999999999999999999999999 99999999999999999987654
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=3.9e-16 Score=134.73 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=54.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 97 KYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
+|.+||.+|+.+||+.|..++||+..+|++||+++||+++||++||||||+|+|+.+.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 4456999999999999999999999999999999999999999999999999997543
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=4.7e-16 Score=132.81 Aligned_cols=64 Identities=22% Similarity=0.385 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
.++.||+|++|+.+|+..||..|.. ++||+..+|++||.++||+++||++||||||+|+|+...
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 3456788999999999999999987 999999999999999999999999999999999997543
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.57 E-value=4.6e-16 Score=133.16 Aligned_cols=61 Identities=21% Similarity=0.341 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 94 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
.++.|+.||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|+.+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 4678899999999999999999999999999999999999999999999999999997543
No 49
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=3.4e-16 Score=139.16 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 99 HRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 99 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
.+||.+|+.+||+.|..++||+..+|++||.+|||+++||+|||||||+|||++.+
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999997543
No 50
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.8e-16 Score=133.00 Aligned_cols=59 Identities=19% Similarity=0.428 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
++.|++||.+|+..||..|+.++||+..+|++||+++||+++||++||||||+|+|++.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 44588999999999999999999999999999999999999999999999999999754
No 51
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-15 Score=133.30 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
+.++||+|++|+.+|+..||..|.+ ++||+..+|++||.++||+++||++||||||+|+|+...+
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 3467888999999999999999987 5999999999999999999999999999999999876543
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.55 E-value=1.2e-15 Score=130.26 Aligned_cols=61 Identities=25% Similarity=0.578 Sum_probs=57.5
Q ss_pred CCCCCCCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 95 KKKYHRHTPHQIQELESFF---KECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
||+|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6788999999999999999 999999999999999999999999999999999999976544
No 53
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.7e-15 Score=136.10 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---------------------CCCcceEEeeccchhhHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRL---------------------GLESKQIKFWFQNRRTQM 149 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L---------------------gLs~rQVkvWFQNRRak~ 149 (784)
.+++||.|+.||+.|+.+||+.|+.++||+..+|++||.+| +|++.+|++||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678899999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHh
Q 003954 150 KTQMER 155 (784)
Q Consensus 150 Kr~~~~ 155 (784)
|++++.
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 986543
No 54
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.54 E-value=8.6e-16 Score=150.46 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (784)
.+++||+|++||.+|+..||+.|..++||+..+|++||+++||+++||++||||||+|+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34678899999999999999999999999999999999999999999999999999999973
No 55
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.54 E-value=8.7e-16 Score=148.37 Aligned_cols=62 Identities=24% Similarity=0.445 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (784)
.+++||+|++||.+|+..||+.|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45678889999999999999999999999999999999999999999999999999999974
No 56
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=6.5e-16 Score=132.16 Aligned_cols=58 Identities=31% Similarity=0.464 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHH
Q 003954 95 KKKYHRHTPHQIQELESFF-KECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F-~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (784)
.++|++++.+|+..||+.| +.++||+..+|++||.+|||+++||++||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4566778999999999999 999999999999999999999999999999999999953
No 57
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.53 E-value=2.2e-15 Score=132.79 Aligned_cols=61 Identities=25% Similarity=0.578 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 95 KKKYHRHTPHQIQELESFF---KECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
||+|++||.+|+..||..| ..++||+..+|++||.++||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6788999999999999999 899999999999999999999999999999999999986544
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2e-15 Score=134.23 Aligned_cols=58 Identities=24% Similarity=0.436 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 97 KYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
++.+||.+|+..||..|..++||+..+|++||.++||+++||++||||||+|+|++.+
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 3445999999999999999999999999999999999999999999999999987543
No 59
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=1.2e-15 Score=127.06 Aligned_cols=58 Identities=24% Similarity=0.504 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 94 RKKKYHRHTPHQIQELESFF---KECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 94 krR~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
.+++|++||.+|+..||..| ..++||+..++++||.++||+++||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 47788999999999999999 99999999999999999999999999999999999885
No 60
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.53 E-value=2e-15 Score=124.05 Aligned_cols=55 Identities=38% Similarity=0.537 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 97 KYHRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
+|++||.+|+..||..|.. ++||+..+|++||.++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4688999999999999999 999999999999999999999999999999999986
No 61
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=2.8e-15 Score=125.66 Aligned_cols=60 Identities=27% Similarity=0.401 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKE-CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~K 150 (784)
.+++||.||.|+.+|+..|+.+|+. ++||+...|++||.+|||++++|++||||||.-.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 4467899999999999999999999 99999999999999999999999999999997543
No 62
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.52 E-value=9.6e-16 Score=150.81 Aligned_cols=64 Identities=30% Similarity=0.487 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (784)
.+++||+|++||.+|+..||+.|..++||+..+|++||+++||+++||++||||||+|+||+.+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4577889999999999999999999999999999999999999999999999999999998654
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.51 E-value=3.7e-15 Score=131.57 Aligned_cols=58 Identities=34% Similarity=0.496 Sum_probs=55.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHH
Q 003954 93 PRKKKYHRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~K 150 (784)
+++|+|++||.+|+..||..|.. ++||+..+|++||.++||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45667899999999999999999 99999999999999999999999999999999987
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.50 E-value=4.4e-15 Score=144.03 Aligned_cols=61 Identities=26% Similarity=0.665 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
.+++||+|++||.+|+..||+.|+.++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4567889999999999999999999999999999999999999999999999999999985
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.50 E-value=1.7e-15 Score=137.30 Aligned_cols=64 Identities=20% Similarity=0.385 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH------------------hC---CCcceEEeeccchhhHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRR------------------LG---LESKQIKFWFQNRRTQM 149 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~------------------Lg---Ls~rQVkvWFQNRRak~ 149 (784)
.+++||.|+.||.+|+..||..|+.++||+..+|++||.+ || |+++||++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4577889999999999999999999999999999999999 88 99999999999999998
Q ss_pred HHHHH
Q 003954 150 KTQME 154 (784)
Q Consensus 150 Kr~~~ 154 (784)
|+++.
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 86554
No 66
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.50 E-value=4.1e-15 Score=130.36 Aligned_cols=60 Identities=33% Similarity=0.458 Sum_probs=54.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 94 RKKKYHRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 94 krR~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
++++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 3456677999999999999999 99999999999999999999999999999999999753
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-15 Score=129.06 Aligned_cols=57 Identities=32% Similarity=0.471 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHh
Q 003954 99 HRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (784)
Q Consensus 99 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (784)
.-+|..|+..||+.|+.++||+..+|.+||++|||+++||++||||||+|+|+++..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 357999999999999999999999999999999999999999999999999976543
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.49 E-value=5.1e-15 Score=123.99 Aligned_cols=53 Identities=28% Similarity=0.493 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 101 HTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 101 fT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
-|.+|+.+||+.|..++||+..+|++||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 37899999999999999999999999999999999999999999999999754
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.46 E-value=5.4e-15 Score=123.61 Aligned_cols=49 Identities=37% Similarity=0.599 Sum_probs=46.3
Q ss_pred HHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 103 PHQIQELESFF-KECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 103 ~~Ql~~LE~~F-~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
..|+.+||+.| ..++||+..+|.+||++|||+++|||+||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 46899999999 67999999999999999999999999999999999985
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.45 E-value=1.3e-14 Score=141.34 Aligned_cols=61 Identities=31% Similarity=0.555 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHH
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (784)
+++||+|++||.+|+..||+.|+.++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567789999999999999999999999999999999999999999999999999999963
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-14 Score=121.24 Aligned_cols=53 Identities=13% Similarity=0.333 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 99 HRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 99 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
..++.+|+..||+.|..++||+..+|++||++|||+++||++||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34578999999999999999999999999999999999999999999998774
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.42 E-value=1.9e-14 Score=141.12 Aligned_cols=63 Identities=29% Similarity=0.390 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.+++||+|+.||.+|+..||+.|+.++||+..+|++||.+|||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 456788999999999999999999999999999999999999999999999999999998654
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=1.3e-13 Score=116.28 Aligned_cols=57 Identities=23% Similarity=0.408 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhh
Q 003954 100 RHTPHQIQELESFFK---ECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~---~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (784)
+||.+|+..||..|. .++||+..+|++||.++||+++||++||||||+|+|+...++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 699999999999999 999999999999999999999999999999999999765544
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.29 E-value=2.5e-13 Score=136.89 Aligned_cols=61 Identities=18% Similarity=0.332 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCcceEEeeccchhhHH
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLG---------------------LESKQIKFWFQNRRTQM 149 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~Lg---------------------Ls~rQVkvWFQNRRak~ 149 (784)
.+++||.|+.||+.|+..||+.|+.++||+...|++||.+|+ |++.||++||||||+|+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 457788999999999999999999999999999999999999 99999999999999998
Q ss_pred HH
Q 003954 150 KT 151 (784)
Q Consensus 150 Kr 151 (784)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 75
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.25 E-value=1.3e-10 Score=118.69 Aligned_cols=200 Identities=11% Similarity=0.123 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceEecCC--CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHH-H
Q 003954 286 RNMLIDLALTAMDELIKMAEADSPLWIKSLD--GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALI-E 362 (784)
Q Consensus 286 ~~~~~~lA~~Am~El~~la~~~~plWi~~~~--~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LV-e 362 (784)
....++++++|+++++++... .--|..... .|..+ |.+..+.. |. .-|..++|...+..+. +
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~v-----y~~~~~~~------g~---~~k~~~~v~~~~~~v~~~ 84 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDTV-----YTIEVPFH------GK---TFILKTFLPCPAELVYQE 84 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCEE-----EEEEETTT------EE---EEEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCEE-----EEEecCCC------Cc---eEEEEEEecCCHHHHHHH
Confidence 466789999999999999863 347966532 22111 44433311 11 3488899999999998 7
Q ss_pred HhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecc--cccccceeeEEEEeeeeecCCeEEEEEEec
Q 003954 363 TMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVL--SPLVPVRQAKFLRFCKQHIEGVWAVVDVSI 440 (784)
Q Consensus 363 ~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~--SpLvp~Re~~fLRyckq~~~g~w~VvDvS~ 440 (784)
+|+|.+...+-.+. +..++.++.+ . +++ .+ +-++..+ .+++++|||.++|+++.. ++.++|+-.|+
T Consensus 85 ~~~d~~~r~~Wd~~-~~~~~vle~~-~-------~~t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv 152 (229)
T 1em2_A 85 VILQPERMVLWNKT-VTACQILQRV-E-------DNT-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIAT 152 (229)
T ss_dssp TTTCHHHHTTTCTT-EEEEEEEEEE-T-------TTE-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEEC
T ss_pred HHhCccchhhcccc-cceEEEEEec-C-------CCe-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecc
Confidence 77776533333333 3456777766 2 123 23 4456655 678999999999999997 56799999999
Q ss_pred cCCCCCCCCCCccceeecCCcceEeeCC--CCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHHHH
Q 003954 441 DTNREGLSADPFQTYRRLPSGFVVQDVP--NNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCECL 517 (784)
Q Consensus 441 d~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~cerl 517 (784)
+... .+....++|+..+++|++|++++ +|.|+|||+-|++..-+ +| +.+++..+.-+.-.+++.|+.+|+.+
T Consensus 153 ~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 153 SHSA-KPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp CCTT-SCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCC-CCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7542 22234789999999999999987 67899999999987765 44 56677777766777888898888754
No 76
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.24 E-value=5.3e-11 Score=121.06 Aligned_cols=194 Identities=13% Similarity=0.187 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEecC--CCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHh-
Q 003954 288 MLIDLALTAMDELIKMAEADSPLWIKSL--DGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETM- 364 (784)
Q Consensus 288 ~~~~lA~~Am~El~~la~~~~plWi~~~--~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~l- 364 (784)
-...+|++||+|++++.. ++.-|.... +.|.. -|.+.+|.. | -.=|..++|...+..+.+.|
T Consensus 11 ~y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~gv~-----vy~~~~~~~------g---~~~k~~~~v~~~~~~v~~~l~ 75 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILS-NQEGWKKESQQDNGDK-----VMSKVVPDV------G---KVFRLEVVVDQPMERLYEELV 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTCEEEEECTTSCE-----EEEEECSSS------C---EEEEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCeEeeecCCCcE-----EEEEEcCCC------c---eEEEEEEEEcCCHHHHHHHHH
Confidence 357899999999999976 455797762 23322 233433322 1 34488999999999999998
Q ss_pred cC---hhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeee-ecccccccceeeEEEEeeeeecCCeEEEEEEec
Q 003954 365 MD---ANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEF-QVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSI 440 (784)
Q Consensus 365 mD---~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael-~~~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~ 440 (784)
+| +.+|-.. +..++.++.+ . +. -.+.|... ..+.+++++|||.++||.++. +|.++|+-.|+
T Consensus 76 ~d~~~r~~Wd~~----~~~~~vle~~-~-------~~-t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv 141 (221)
T 3p0l_A 76 ERMEAMGEWNPN----VKEIKVLQKI-G-------KD-TFITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMAT 141 (221)
T ss_dssp TTGGGTTTSCTT----CSEEEEEEEC-S-------SS-EEEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEEC
T ss_pred hccchhhhcCcc----hheEEEEEec-C-------CC-eEEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEec
Confidence 46 4567665 3445666665 2 12 34666443 223568999999999999986 68899999998
Q ss_pred cCCCCCCCCCCccceeecCCcceEeeCCCC--ccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHH
Q 003954 441 DTNREGLSADPFQTYRRLPSGFVVQDVPNN--YSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (784)
Q Consensus 441 d~~~~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 515 (784)
+... .+....++|...+++|++|+++++| .|+|||+-|++..-+ +| +-+++..+.-+.-.++..|+++|+
T Consensus 142 ~~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 142 DFGN-MPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CCTT-SCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCC-CCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7432 1222478999999999999999988 999999999998766 33 345666666667778999988887
No 77
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.23 E-value=2.9e-11 Score=125.09 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEecCCC-CccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHH-HHhcCh
Q 003954 290 IDLALTAMDELIKMAEADSPLWIKSLDG-GRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALI-ETMMDA 367 (784)
Q Consensus 290 ~~lA~~Am~El~~la~~~~plWi~~~~~-~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LV-e~lmD~ 367 (784)
-.+++.++.|+++.+.....-|....+. |..+ |.+..+ .|...-.=|..++|...+.+++ ++|.|+
T Consensus 31 ~~~l~~~~~~ll~~~~~~~~gW~~~~~~~gi~V-----~~k~~~-------~~~~~~~~K~~~~v~~~~~~v~~~ll~dr 98 (237)
T 2pso_A 31 HTYLNHLIQGLQKEAKEKFKGWVTCSSTDNTDL-----AFKKVG-------DGNPLKLWKASVEVEAPPSVVLNRVLRER 98 (237)
T ss_dssp -CCCCCHHHHHHHHHHHHCCSCEEECCSSSCEE-----EEECCC-------SSCCCCEEEEEEEESSCHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHhhcCCCCCEEEecCCCeEE-----EEEEcC-------CCCCcEEEEEEEEEcCChHHHHHHHHhhh
Confidence 3345677888887766555579776432 2111 222211 2333345577888877777764 789999
Q ss_pred hhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeee-ecCCeEEEEEEeccCCCCC
Q 003954 368 NRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ-HIEGVWAVVDVSIDTNREG 446 (784)
Q Consensus 368 ~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq-~~~g~w~VvDvS~d~~~~~ 446 (784)
.+|-.. +..++.++.| . +.-.++|..+..+.| +++|||.++||.++ +++|.++||-.|++... .
T Consensus 99 ~~Wd~~----~~~~~vle~i-d--------~~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~-~ 163 (237)
T 2pso_A 99 HLWDED----FVQWKVVETL-D--------RQTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-A 163 (237)
T ss_dssp GGTCTT----BCCCEEEEEE-E--------TTEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTT-C
T ss_pred hhHHhh----hceEEEEEEc-C--------CCcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCC-C
Confidence 999887 4456666666 2 233677887776665 79999999999985 78999999999998543 2
Q ss_pred CCCCCccceeecCCcceEeeCCCCccEEEEEEeeeeccccccccc
Q 003954 447 LSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLC 491 (784)
Q Consensus 447 ~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~ 491 (784)
+.. .++|+..+++|++|+++.+|.|+|||+-|++.. ..+|.-+
T Consensus 164 P~~-g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~l 206 (237)
T 2pso_A 164 QLL-GGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWY 206 (237)
T ss_dssp CCC-SSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTT
T ss_pred CCC-CcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHH
Confidence 333 789999999999999999999999999999987 4566654
No 78
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.14 E-value=7.3e-12 Score=127.80 Aligned_cols=60 Identities=18% Similarity=0.360 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCcceEEeeccchhhH
Q 003954 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLG---------------------LESKQIKFWFQNRRTQ 148 (784)
Q Consensus 90 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~Lg---------------------Ls~rQVkvWFQNRRak 148 (784)
..+++||.|+.|++.|+.+||+.|..++||+..+|++||+++| |++.||++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4567788999999999999999999999999999999999998 8999999999999986
Q ss_pred H
Q 003954 149 M 149 (784)
Q Consensus 149 ~ 149 (784)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 79
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.11 E-value=2.1e-11 Score=108.12 Aligned_cols=59 Identities=27% Similarity=0.424 Sum_probs=53.8
Q ss_pred CCCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhh
Q 003954 98 YHRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (784)
Q Consensus 98 RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (784)
-..|+.+++..|+..|.+ ++||+..+|++||+++||+++||++||||||.|+|+...+.
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 357899999999999987 99999999999999999999999999999999999765443
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=3.4e-11 Score=101.61 Aligned_cols=46 Identities=20% Similarity=0.476 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhH
Q 003954 103 PHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ 148 (784)
Q Consensus 103 ~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak 148 (784)
.+|+..||..|..+++|+..++.+||..+||+.++||+||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4799999999999999999999999999999999999999999974
No 81
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.99 E-value=2.9e-11 Score=132.18 Aligned_cols=56 Identities=23% Similarity=0.475 Sum_probs=53.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHH
Q 003954 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (784)
Q Consensus 95 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~K 150 (784)
++.|+.++.+|+..||+.|+.++||+..+|++||+++||+++|||+||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45677899999999999999999999999999999999999999999999999876
No 82
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.96 E-value=4.7e-09 Score=105.35 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=119.2
Q ss_pred eeeecceeEE-echhHHHHHhcC---hhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeE
Q 003954 345 EASRETGMVI-INSSALIETMMD---ANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAK 420 (784)
Q Consensus 345 eAsR~~~~V~-~~~~~LVe~lmD---~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~ 420 (784)
-.-|..++|. ..+..+.+.|+| +.+|... +...+|| .. +|. .++|.++..|.|+ ..|||.
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~-------~~~~~vl-e~------~~~-~i~~~~~~~p~p~-~~RD~v 115 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY-------VKELYEQ-EC------NGE-TVVYWEVKYPFPM-SNRDYV 115 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT-------EEEEEEE-EE------TTE-EEEEEEECCCTTS-CCEEEE
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH-------HhhEEEe-cc------CCC-EEEEEEEEcCCCC-CCceEE
Confidence 3568999995 999999999999 6788777 6677777 43 232 4789999998886 999999
Q ss_pred EEEeeeeec-CC--eEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeeccccccccccccccc
Q 003954 421 FLRFCKQHI-EG--VWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSS 497 (784)
Q Consensus 421 fLRyckq~~-~g--~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~s 497 (784)
++|+++.++ +| .|+|+-.|++... .+....++|...+++|++|++..+|.|+||++-|++.. ..+|.- |++.
T Consensus 116 ~~~~~~~~~~~g~~~~~i~~~Sv~~p~-~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~ 190 (214)
T 1ln1_A 116 YLRQRRDLDMEGRKIHVILARSTSMPQ-LGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINW 190 (214)
T ss_dssp EEEEEEEECSTTCCEEEEEEEECCBTT-BCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHH
T ss_pred EEEEEEecccCCCeEEEEEEecccCCC-CCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHH
Confidence 999999875 66 5999999997543 22234789999999999999999999999999999987 445543 3444
Q ss_pred ccchhHHHHHHHHHHHHHHH
Q 003954 498 GMGFGAPKWVATLQRQCECL 517 (784)
Q Consensus 498 g~afGA~rwla~LqR~cerl 517 (784)
.+.-++..++..|+++|+.+
T Consensus 191 ~~~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 191 AAKNGVPNFLKDMARACQNY 210 (214)
T ss_dssp HHHTHHHHHHHHHHHHHHTC
T ss_pred HHHHHhHHHHHHHHHHHHhc
Confidence 45556777888888888743
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.95 E-value=3.6e-09 Score=107.92 Aligned_cols=191 Identities=10% Similarity=0.115 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEecCC-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcC
Q 003954 288 MLIDLALTAMDELIKMAEADSPLWIKSLD-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMD 366 (784)
Q Consensus 288 ~~~~lA~~Am~El~~la~~~~plWi~~~~-~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~lmD 366 (784)
-+.+.+.++|.++..+. +.-|-...+ .|.. =|.+..+ +...-.-|..++|...+..|.+.|+|
T Consensus 25 ~~~~~~~e~l~~~~~~~---~~~W~~~~~~~gv~-----vy~~~~~--------~~~~~~~k~~~~v~~~~~~v~~~l~d 88 (224)
T 1jss_A 25 SISTKLQNTLIQYHSIE---EDEWRVAKKAKDVT-----VWRKPSE--------EFNGYLYKAQGVMDDVVNNVIDHIRP 88 (224)
T ss_dssp THHHHHHHHHHHHTTSC---GGGCEEEEEETTEE-----EEEEECS--------SSSSEEEEEEEEESSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhhC---CCCCEEEEECCCEE-----EEEEecc--------CCCceEEEEEEEEeCCHHHHHHHHhC
Confidence 46676777777666543 456966532 2211 1222111 11223458889999999999999999
Q ss_pred hh---hHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecc-cccccceeeEEEEeeeeecCCeEEEEEEeccC
Q 003954 367 AN---RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVL-SPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDT 442 (784)
Q Consensus 367 ~~---~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~-SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~ 442 (784)
.. +|-.. +..++.++.| ++.-.+.|.-+..+ -|++.+|||.++|+.++.++| ++|+-+|++.
T Consensus 89 ~~~r~~Wd~~----~~~~~vle~i---------d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~h 154 (224)
T 1jss_A 89 GPWRLDWDRL----MTSLDVLEHF---------EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEW 154 (224)
T ss_dssp STTHHHHCSS----EEEEEEEEEC---------STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCC
T ss_pred cccccccccc----eeeEEEEEEc---------CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeec
Confidence 65 77666 3445666665 22235666666543 457999999999999998777 8889999984
Q ss_pred CCCCCCCCCccceeecCCcceEeeCCCC--ccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHH
Q 003954 443 NREGLSADPFQTYRRLPSGFVVQDVPNN--YSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (784)
Q Consensus 443 ~~~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 515 (784)
... ...++|...+++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+...++..|+.+|+
T Consensus 155 p~~---~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 155 SET---RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CCC---CTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC---CCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 432 2378999999999999999875 899999999998754 33 345666666667778888877764
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.81 E-value=1.6e-08 Score=106.19 Aligned_cols=122 Identities=11% Similarity=0.076 Sum_probs=94.8
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccc--cccceeeEEEEee
Q 003954 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSP--LVPVRQAKFLRFC 425 (784)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~Sp--Lvp~Re~~fLRyc 425 (784)
|..++|...+..|.+.|+|.+...+=.+. +..++.++-| + +. .++| ++..++| ++++|||..|||.
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~-~~~~~vle~i-d--------~~-~ivY-~~~~p~~~~~v~~RDFV~lr~~ 158 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKH-YRSVELVQQV-D--------ED-DAIY-HVTSPALGGHTKPQDFVILASR 158 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTT-CCEEEEEEEE-E--------TT-EEEE-EEEECCCTTCSSCEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhh-ccEEEEEEEc-C--------CC-eEEE-EEecCCccCCCCCCEEEEEEEE
Confidence 78889999999999999988644333333 3446777777 2 11 4677 6777876 7999999999999
Q ss_pred ee-ecCCe-EEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeee
Q 003954 426 KQ-HIEGV-WAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEY 482 (784)
Q Consensus 426 kq-~~~g~-w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~ 482 (784)
+. ..+|. ++|+-+|++... .+....++|...+|+||+|+++++|.|+||++-|++-
T Consensus 159 r~~~~~G~~yvi~~~SV~hp~-~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp 216 (258)
T 3fo5_A 159 RKPCDNGDPYVIALRSVTLPT-HRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP 216 (258)
T ss_dssp ECCSSTTCCEEEEEEEEECTT-SCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG
T ss_pred EeccCCCCEEEEEEEeccCCC-CCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC
Confidence 87 44775 999999988432 2223368999999999999999999999999988873
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.53 E-value=7.6e-07 Score=87.71 Aligned_cols=152 Identities=14% Similarity=0.053 Sum_probs=108.8
Q ss_pred eeecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEee
Q 003954 346 ASRETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFC 425 (784)
Q Consensus 346 AsR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyc 425 (784)
.=|..++|...+.++.+.|+|.+...+--|. +...+|| .. .+ + -.++|.++..|-| +..|||.++|+.
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~----~~~~~vl-e~--~~---~-~~i~y~~~~~p~p-~~~RD~v~~~~~ 95 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPD----VAASELL-KA--TD---T-EQYHYLDNSAPWP-VSNRDGVYHFTY 95 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTT----EEEEEEE-EE--CS---S-EEEEEEEECCSSS-CCCEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHh----cCEEEEE-ee--cC---C-ceEEEEEeecCCC-cCCcceEEEEEE
Confidence 4688899999999999999997654444333 6667778 54 11 2 3567888877765 789999999999
Q ss_pred eeecCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHH
Q 003954 426 KQHIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPK 505 (784)
Q Consensus 426 kq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~r 505 (784)
+...+|...|+=.+ +. ...+....++|.+.+++|++|++ .+|.|+||++-|++..-+ +|. -|++..+.-+.-.
T Consensus 96 ~~~~~g~~~i~~~~-~~-~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G~-iP~---~lvn~~~~~~~~~ 168 (189)
T 3qsz_A 96 EKAGDGAITVRVEA-VP-DYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGS-IPS---WLANQTVVETPFG 168 (189)
T ss_dssp EECTTSCEEEEEEE-CT-TSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCSS-SCH---HHHHHTTTHHHHH
T ss_pred EECCCCeEEEEEEc-CC-CccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCCC-CCH---HHHHHHHHHHHHH
Confidence 99888876554333 21 11122236899999999999999 999999999999987643 333 2344455556667
Q ss_pred HHHHHHHHHHH
Q 003954 506 WVATLQRQCEC 516 (784)
Q Consensus 506 wla~LqR~cer 516 (784)
.+..|+++|+.
T Consensus 169 ~l~~L~k~~~~ 179 (189)
T 3qsz_A 169 TLKALRSHLRQ 179 (189)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhh
Confidence 78888877763
No 86
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.40 E-value=1.9e-06 Score=89.32 Aligned_cols=199 Identities=14% Similarity=0.233 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHhhcC---CCCceEecCC-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEE-echhHHHHH
Q 003954 289 LIDLALTAMDELIKMAEA---DSPLWIKSLD-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVI-INSSALIET 363 (784)
Q Consensus 289 ~~~lA~~Am~El~~la~~---~~plWi~~~~-~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~-~~~~~LVe~ 363 (784)
+.++++..+.|.+..+.. +..-|....+ +| ..-|.+..+. .|...-.=|..+.|. ..+..+.+.
T Consensus 24 ~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~~~g-----v~vy~~~~~~------~g~~~~~~K~~~~~~~~~~~~v~~~ 92 (255)
T 2e3n_A 24 FVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEGE-----MKVYRREVEE------NGIVLDPLKATHAVKGVTGHEVCNY 92 (255)
T ss_dssp THHHHHHHHHHHHHHTTSCCTTCTTEEEEEEETT-----EEEEEECCEE------TTEECCCEEEEEEEETCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeCCC-----EEEEEEEcCC------CCceeeeEEEEEEEcCCCHHHHHHH
Confidence 455555666666655543 3357976542 22 1123332221 121111235556665 778999999
Q ss_pred hcCh---hhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeec----C--CeEE
Q 003954 364 MMDA---NRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHI----E--GVWA 434 (784)
Q Consensus 364 lmD~---~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~----~--g~w~ 434 (784)
|+|. .+|-.. +..++.++.| . .++ .+.|..+..|.|+ ..|||.++|++++.. + +.|+
T Consensus 93 l~d~~~r~~Wd~~----~~~~~vle~i-~-------~~~-~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~ 158 (255)
T 2e3n_A 93 FWNVDVRNDWETT----IENFHVVETL-A-------DNA-IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWI 158 (255)
T ss_dssp HHCGGGHHHHCCS----EEEEEEEEEE-E-------TTE-EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEE
T ss_pred HhCcchHhhhhhh----cceeEEEEEc-C-------CCC-EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEE
Confidence 9994 566655 4456666666 2 122 7889999888885 889999999999873 3 5999
Q ss_pred EEEEeccCCCCCCCCCCccceee---cCCcceEeeCCC--------CccEEEEEEeeeecccccccccccccccccchhH
Q 003954 435 VVDVSIDTNREGLSADPFQTYRR---LPSGFVVQDVPN--------NYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGA 503 (784)
Q Consensus 435 VvDvS~d~~~~~~~~~~~~~~~r---~PSGclIq~~~n--------G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA 503 (784)
|+..|++.-. .+....++|... +.+|++|++..+ +.|+|||+-|++..- .+|.- +++.....+.
T Consensus 159 i~~~Sv~~~~-~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~ 233 (255)
T 2e3n_A 159 VCNFSVDHDS-APLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPAS---VLRAVAKREY 233 (255)
T ss_dssp EEEEECCCTT-SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHH
T ss_pred EEEeccCCCC-CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCHH---HHHHHHhccc
Confidence 9999998542 222236789884 678999998733 579999999998764 34432 2444455666
Q ss_pred HHHHHHHHHHHHHH
Q 003954 504 PKWVATLQRQCECL 517 (784)
Q Consensus 504 ~rwla~LqR~cerl 517 (784)
...+..|+++++..
T Consensus 234 ~~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 234 PKFLKRFTSYVQEK 247 (255)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh
Confidence 77788888887744
No 87
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.33 E-value=2.5e-08 Score=74.38 Aligned_cols=21 Identities=48% Similarity=0.854 Sum_probs=18.3
Q ss_pred ceEEeeccchhhHHHHHHHhh
Q 003954 136 KQIKFWFQNRRTQMKTQMERH 156 (784)
Q Consensus 136 rQVkvWFQNRRak~Kr~~~~~ 156 (784)
+||+|||||||+||||++.+.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 699999999999999876653
No 88
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=97.53 E-value=0.0063 Score=61.62 Aligned_cols=199 Identities=15% Similarity=0.129 Sum_probs=117.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhhccCCCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhh
Q 003954 535 PIGRKSMLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFM 614 (784)
Q Consensus 535 ~~Gr~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FL 614 (784)
...+..++++|+..+..|-.-+.. ..+|.... ..++|+|..+...+. + |.++ ++..-++++|..||++|
T Consensus 18 ~~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~---~~~gv~v~~~~~~~~---~-~~~~--k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 18 LYFQSMAAQMSEAVAEKMLQYRRD--TAGWKICR---EGNGVSVSWRPSVEF---P-GNLY--RGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHC--CSSCEEEE---CCSSEEEEEEECSSS---S-SEEE--EEEEEESSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhcC--CCCCEEEE---eCCCEEEEEEccCCC---C-CcEE--EEEEEECCCHHHHHHHH
Confidence 334557999999999888876643 47899776 357899998876322 2 3344 45555599999999999
Q ss_pred --hccccchhhhhhcCCCccceeeecccCCCCCCeEEEEE-cccC---C-CCCCceEEEEeeccCCCccEE-EEeecCcc
Q 003954 615 --RDERMRSEWDILSNGGPLQEMVHIAKGQAPGNCASLLR-AGAM---N-VNDSGMLILQETWNDSSGSLV-VYAPVDVP 686 (784)
Q Consensus 615 --rd~~~R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsll~-~~~~---~-~~~~~~liLQes~td~sgs~v-VyAPvD~~ 686 (784)
.|...|.+||...- ..+.+..|. .... |++ +... . ...++..+|.-...+.-|+++ +.-.||-+
T Consensus 87 ~~~d~~~r~~Wd~~~~--~~~vle~i~----~~~~--i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~ 158 (231)
T 2r55_A 87 KPAVGGLRVKWDENVT--GFEIIQSIT----DTLC--VSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHP 158 (231)
T ss_dssp CC--CCSHHHHCTTCS--EEEEEEECS----SSEE--EEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCT
T ss_pred HhhCcchhhhhccccc--eeEEEEEcC----CCEE--EEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCC
Confidence 99999999997442 223333332 1222 333 2211 1 233566666654445557775 57778755
Q ss_pred cccccccCCCCCC--ccccCCccEEcCCCCCCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHH
Q 003954 687 SMSMVMNGGDSTC--VALLPSGFAILPDGYFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVE 764 (784)
Q Consensus 687 ~m~~vm~G~D~~~--v~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~ 764 (784)
.+-. -+.+ +.++++||.|-|... ..++|.+|.-+|+=.... +. ..+.
T Consensus 159 ~~P~-----~~~~VR~~~~~~g~~i~p~~~---------------------~~~~t~vt~~~~~Dp~G~----iP-~~lv 207 (231)
T 2r55_A 159 LCPP-----KPGFVRGFNHPCGCFCEPLPG---------------------EPTKTNLVTFFHTDLSGY----LP-QNVV 207 (231)
T ss_dssp TSCC-----CTTCEEEEECSEEEEEEECC-----------------------CCCEEEEEEECEECCSS----CC-HHHH
T ss_pred CCCC-----CCCCEEEEEEeeEEEEEEeCC---------------------CCCcEEEEEEEEeCCCCC----cc-HHHH
Confidence 4221 1233 358899999998411 014788888777655432 22 2222
Q ss_pred -H-HhhHhHHHHHHHHHHhhc
Q 003954 765 -T-VNNLISCTIQKIKAAVLE 783 (784)
Q Consensus 765 -t-v~~li~~tv~~Ik~Al~~ 783 (784)
. +..-+-.++++++.++.+
T Consensus 208 n~~~~~~~~~~~~~Lr~~~~~ 228 (231)
T 2r55_A 208 DSFFPRSMTRFYANLQKAVKQ 228 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHhHhHHHHHHHHHHHHHH
Confidence 1 222333477777777653
No 89
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=97.20 E-value=0.014 Score=57.09 Aligned_cols=171 Identities=12% Similarity=0.087 Sum_probs=97.3
Q ss_pred CCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhcCCCccceeeecccC
Q 003954 562 RKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHIAKG 641 (784)
Q Consensus 562 ~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~ia~g 641 (784)
++|.... ..++|+|..++.. |. .+..-++...++.||+.||++|.|...|.+||-. +.+.--|.+
T Consensus 3 ~~W~~~~---~~~gv~v~~~~~~---~~---~~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~-----~~~~~vle~- 67 (189)
T 3qsz_A 3 DGWSLAK---DAEGIKVYVRNVE---GS---PLREFRGEVRLKAAADDVVKVLRDANAFRQWMPD-----VAASELLKA- 67 (189)
T ss_dssp CCCEEEE---EETTEEEEEECCT---TC---SSCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTT-----EEEEEEEEE-
T ss_pred CCCEEEE---cCCCEEEEEEeCC---CC---CeEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHh-----cCEEEEEee-
Confidence 5898775 2578999998862 22 1335666777899999999999999999999964 344444444
Q ss_pred CCCCCeEEEEEcccC-CCCCCceEEEEeeccCCCccEEEEeecCcccccccccCCCCCC--ccccCCccEEcCCCCCCCC
Q 003954 642 QAPGNCASLLRAGAM-NVNDSGMLILQETWNDSSGSLVVYAPVDVPSMSMVMNGGDSTC--VALLPSGFAILPDGYFGHG 718 (784)
Q Consensus 642 ~~~gn~vsll~~~~~-~~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~D~~~--v~lLPSGF~I~Pdg~~~~~ 718 (784)
+.++.|.-...... .-...+..++.....|..|.++|..-.+-+.+ ...+.+ +..+++||.|-| +.
T Consensus 68 -~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~~-----P~~~~~VR~~~~~~~~~i~p-~~---- 136 (189)
T 3qsz_A 68 -TDTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDYL-----PLRKGKVRIPRAKGQWTLVP-DA---- 136 (189)
T ss_dssp -CSSEEEEEEEECCSSSCCCEEEEEEEEEEECTTSCEEEEEEECTTSS-----CCCTTSEECCCEEEEEEEEE-CS----
T ss_pred -cCCceEEEEEeecCCCcCCcceEEEEEEEECCCCeEEEEEEcCCCcc-----CCCCCeEEeeEeeEEEEEEE-CC----
Confidence 33344433333322 12234555554433344465544332211100 011222 456778888877 21
Q ss_pred CccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHHH--HhhHhHHHHHHHHHHhh
Q 003954 719 GLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVET--VNNLISCTIQKIKAAVL 782 (784)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~t--v~~li~~tv~~Ik~Al~ 782 (784)
++|.+|.-+|+=.... .+..+.. +...+-.++++++.++.
T Consensus 137 -------------------~~t~vt~~~~~dp~G~-----iP~~lvn~~~~~~~~~~l~~L~k~~~ 178 (189)
T 3qsz_A 137 -------------------DGVDVTYQMHASPGGS-----IPSWLANQTVVETPFGTLKALRSHLR 178 (189)
T ss_dssp -------------------SSEEEEEEEEECSCSS-----SCHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred -------------------CeEEEEEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3688887777655433 2333333 33344457777777764
No 90
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=96.88 E-value=0.021 Score=57.68 Aligned_cols=176 Identities=16% Similarity=0.210 Sum_probs=101.8
Q ss_pred CCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhcCCCccceeeeccc
Q 003954 561 VRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHIAK 640 (784)
Q Consensus 561 ~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~ia~ 640 (784)
..+|.... . .++|+|..+...+. .|-+. ++..-+++||+.||++|.|...|.+||..... .+.+-+|
T Consensus 42 ~~~W~~~~-~--~~gv~vy~~~~~~~----~~~~~--k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~~--~~vle~i-- 108 (224)
T 1jss_A 42 EDEWRVAK-K--AKDVTVWRKPSEEF----NGYLY--KAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTS--LDVLEHF-- 108 (224)
T ss_dssp GGGCEEEE-E--ETTEEEEEEECSSS----SSEEE--EEEEEESSCHHHHHHHHSSSTTHHHHCSSEEE--EEEEEEC--
T ss_pred CCCCEEEE-E--CCCEEEEEEeccCC----CceEE--EEEEEEeCCHHHHHHHHhCcccccccccceee--EEEEEEc--
Confidence 56898765 2 47899999865322 23343 45555699999999999999999999964321 2333333
Q ss_pred CCCCCCeEEEEEcccCC---CCCCceEEEEeeccCCCccEEEEeecCcccccccccCCCCCCc--cccCCccEEcCCCCC
Q 003954 641 GQAPGNCASLLRAGAMN---VNDSGMLILQETWNDSSGSLVVYAPVDVPSMSMVMNGGDSTCV--ALLPSGFAILPDGYF 715 (784)
Q Consensus 641 g~~~gn~vsll~~~~~~---~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~D~~~v--~lLPSGF~I~Pdg~~ 715 (784)
+..+.|--......- ...++.+++.....+..+.+++.-.||-+.+ .+.+| .++++||.|-|...
T Consensus 109 --d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~-------~~g~VR~~~~~~g~~i~p~~~- 178 (224)
T 1jss_A 109 --EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSET-------RPEFVRGYNHPCGWFCVPLKD- 178 (224)
T ss_dssp --STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCC-------CTTSEECEECSEEEEEEEETT-
T ss_pred --CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCC-------CCCCEEEEecccEEEEEEcCC-
Confidence 233344333332221 2345666666533345556666677776653 13443 58899999998311
Q ss_pred CCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHHH-HhhHhHHHHHHHHHHhhc
Q 003954 716 GHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVET-VNNLISCTIQKIKAAVLE 783 (784)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~t-v~~li~~tv~~Ik~Al~~ 783 (784)
...+|.+|.-+|+=.... +....+.. +-..+-.+++.++.++.+
T Consensus 179 --------------------~~~~t~vt~~~~~Dp~G~----iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 223 (224)
T 1jss_A 179 --------------------SPSQSLLTGYIQTDLRGM----IPQSAVDTAMASTLANFYSDLRKGLRK 223 (224)
T ss_dssp --------------------EEEEEEEEEEECEECCSC----CCHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred --------------------CCCceEEEEEEEeCCCCC----ccHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 013678886665544432 22222222 122233477777777654
No 91
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=96.78 E-value=0.039 Score=54.77 Aligned_cols=173 Identities=14% Similarity=0.160 Sum_probs=100.7
Q ss_pred CCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecc-cChHHHHHhhhccccchhhhhhcCCCccceeeec
Q 003954 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLP-MTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHI 638 (784)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~i 638 (784)
...+|.... . .++|+|..+... + ..+..-++..-++ +||+.||++|.|...|.+||... .+.--|
T Consensus 26 ~~~~W~~~~-~--~~~v~v~~~~~~---~---~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~-----~~~~vl 91 (214)
T 1ln1_A 26 AGADWQLLV-E--TSGISIYRLLDK---K---TGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV-----KELYEQ 91 (214)
T ss_dssp TTTTCEEEE-E--ETTEEEEEEEET---T---TTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTE-----EEEEEE
T ss_pred CCCCcEEEE-E--CCCeEEEEeccC---C---CCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHH-----hhEEEe
Confidence 456899876 2 468999988652 2 2355677888898 99999999999999999999643 222222
Q ss_pred ccCCCCCCeEEEEEcccCC-CCCCceEEEEeecc--CCCc--cE-EEEeecCcccccccccCCCCCC--ccccCCccEEc
Q 003954 639 AKGQAPGNCASLLRAGAMN-VNDSGMLILQETWN--DSSG--SL-VVYAPVDVPSMSMVMNGGDSTC--VALLPSGFAIL 710 (784)
Q Consensus 639 a~g~~~gn~vsll~~~~~~-~~~~~~liLQes~t--d~sg--s~-vVyAPvD~~~m~~vm~G~D~~~--v~lLPSGF~I~ 710 (784)
-. .|+.|.-......- ...++..++. ++. |..| .+ ++.-.|+-+.+ ...+.+ +..+++||.|-
T Consensus 92 e~---~~~~i~~~~~~~p~p~~~RD~v~~~-~~~~~~~~g~~~~~i~~~Sv~~p~~-----P~~~~~VR~~~~~~~~~i~ 162 (214)
T 1ln1_A 92 EC---NGETVVYWEVKYPFPMSNRDYVYLR-QRRDLDMEGRKIHVILARSTSMPQL-----GERSGVIRVKQYKQSLAIE 162 (214)
T ss_dssp EE---TTEEEEEEEECCCTTSCCEEEEEEE-EEEEECSTTCCEEEEEEEECCBTTB-----CCCTTSEEECCEEEEEEEE
T ss_pred cc---CCCEEEEEEEEcCCCCCCceEEEEE-EEEecccCCCeEEEEEEecccCCCC-----CCCCCcEEEEEEEEEEEEe
Confidence 22 12333333333211 2223455544 343 3334 23 44556664431 112344 45788999988
Q ss_pred CCCCCCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHHH--HhhHhHHHHHHHHHHhhc
Q 003954 711 PDGYFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVET--VNNLISCTIQKIKAAVLE 783 (784)
Q Consensus 711 Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~t--v~~li~~tv~~Ik~Al~~ 783 (784)
|.+ .++|.+|.-.|+=.... -+..+.. +...+-.++++++.++.+
T Consensus 163 p~~-----------------------~~~t~v~~~~~~Dp~G~-----iP~~l~n~~~~~~~~~~l~~l~k~~~~ 209 (214)
T 1ln1_A 163 SDG-----------------------KKGSKVFMYYFDNPGGQ-----IPSWLINWAAKNGVPNFLKDMARACQN 209 (214)
T ss_dssp ECS-----------------------SSSEEEEEEEEECCSSC-----CCHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred cCC-----------------------CCceEEEEEEEECCCCc-----ccHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 841 14788887777655533 2233322 334444577777777643
No 92
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=96.64 E-value=0.11 Score=52.29 Aligned_cols=193 Identities=12% Similarity=0.150 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHHHhh-hcc
Q 003954 539 KSMLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFM-RDE 617 (784)
Q Consensus 539 ~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FL-rd~ 617 (784)
..-.++++.-+..+..-+. ...+|.... ...++|.|..++. ++. |.++ ++..-+++||+.||++| .|.
T Consensus 10 ~~y~~~~~~~~~~~l~~~~--~~~gW~~~~--~~~~gv~vy~~~~---~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~ 78 (221)
T 3p0l_A 10 LAYLQQGEEAMQKALGILS--NQEGWKKES--QQDNGDKVMSKVV---PDV--GKVF--RLEVVVDQPMERLYEELVERM 78 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHH--SCTTCEEEE--ECTTSCEEEEEEC---SSS--CEEE--EEEEEESSCHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCCCeEee--ecCCCcEEEEEEc---CCC--ceEE--EEEEEEcCCHHHHHHHHHhcc
Confidence 3445556555555554443 356899773 1247788999884 332 4444 55555699999999999 588
Q ss_pred ccchhhhhhcCCCccceeeecccCCCCCCeEEEEEc--cc--CC-CCCCceEEEEeeccCCCccEEEE-eecCccccccc
Q 003954 618 RMRSEWDILSNGGPLQEMVHIAKGQAPGNCASLLRA--GA--MN-VNDSGMLILQETWNDSSGSLVVY-APVDVPSMSMV 691 (784)
Q Consensus 618 ~~R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsll~~--~~--~~-~~~~~~liLQes~td~sgs~vVy-APvD~~~m~~v 691 (784)
..|.+||...- ..+.+-+| +.+.. |++. .. .. ....+..+|.-...+. +.+++. -.|+-+.+-
T Consensus 79 ~~r~~Wd~~~~--~~~vle~~----~~~t~--I~y~~~~~~~~~~v~~RDfv~~r~~~~~~-~~~vi~~~Sv~~~~~P-- 147 (221)
T 3p0l_A 79 EAMGEWNPNVK--EIKVLQKI----GKDTF--ITHELAAEAAGNLVGPRDFVSVRCAKRRG-STCVLAGMATDFGNMP-- 147 (221)
T ss_dssp GGTTTSCTTCS--EEEEEEEC----SSSEE--EEEEEECC---CCSCCEEEEEEEEEEECS-SCEEECCEECCCTTSC--
T ss_pred chhhhcCcchh--eEEEEEec----CCCeE--EEEEeeccccCCccCCceEEEEEEEEEcC-CeEEEEEEeccCCCCC--
Confidence 89999996432 22334444 22223 3332 11 11 2345666666644443 555554 345533321
Q ss_pred ccCCCCCCc--cccCCccEEcCCCCCCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhHH-H-Hh
Q 003954 692 MNGGDSTCV--ALLPSGFAILPDGYFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVE-T-VN 767 (784)
Q Consensus 692 m~G~D~~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv~-t-v~ 767 (784)
..+.+| .++++||.|-|.+.. ..+|.+|.-+|+=.... -+.++. . +.
T Consensus 148 ---~~~g~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G~-----iP~~lvn~~~~ 198 (221)
T 3p0l_A 148 ---EQKGVIRAEHGPTCMVLHPLAGS---------------------PSKTKLTWLLSIDLKGW-----LPKSIINQVLS 198 (221)
T ss_dssp ---CCTTSEECEECSCEEEEEEETTE---------------------EEEEEEEEEECEECCSS-----CCHHHHHHHHH
T ss_pred ---CCCCeEEEeccceEEEEEECCCC---------------------CCcEEEEEEEEecCCCC-----CCHHHHHHHHH
Confidence 113333 578999999984210 13788888887755533 223332 2 22
Q ss_pred hHhHHHHHHHHHHhh
Q 003954 768 NLISCTIQKIKAAVL 782 (784)
Q Consensus 768 ~li~~tv~~Ik~Al~ 782 (784)
..+-.+++.++.++.
T Consensus 199 ~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 199 QTQVDFANHLRKRLE 213 (221)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 223347778777765
No 93
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=96.46 E-value=0.071 Score=54.65 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=101.3
Q ss_pred CCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHH-HHhhhccccchhhhhhcCCCccceeeec
Q 003954 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRL-FDFMRDERMRSEWDILSNGGPLQEMVHI 638 (784)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~v-f~FLrd~~~R~eWd~ls~g~~~qe~~~i 638 (784)
...+|.... ..++|+|..++.. .|.+ +..-++..-++.+|..+ +++|.| |.+||...-. ++.+-.|
T Consensus 48 ~~~gW~~~~---~~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~~--~~vle~i 114 (237)
T 2pso_A 48 KFKGWVTCS---STDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFVQ--WKVVETL 114 (237)
T ss_dssp HCCSCEEEC---CSSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBCC--CEEEEEE
T ss_pred CCCCCEEEe---cCCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhce--EEEEEEc
Confidence 455798775 3578999999852 2322 33456677788777665 567777 9999975532 3444444
Q ss_pred ccCCCCCCeEEEEEcccCC-CCCCceEEEEeeccC-CCccEEE-EeecCcccccccccCCCCCCccccCCccEEcCCCCC
Q 003954 639 AKGQAPGNCASLLRAGAMN-VNDSGMLILQETWND-SSGSLVV-YAPVDVPSMSMVMNGGDSTCVALLPSGFAILPDGYF 715 (784)
Q Consensus 639 a~g~~~gn~vsll~~~~~~-~~~~~~liLQes~td-~sgs~vV-yAPvD~~~m~~vm~G~D~~~v~lLPSGF~I~Pdg~~ 715 (784)
. ..+.|--....... ...++.++|.-...| ..|++|| ...|+-+.+-.. | ==-+..+++||.|-|.+
T Consensus 115 d----~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~--g--~VR~~~~~~g~~i~P~~-- 184 (237)
T 2pso_A 115 D----RQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLL--G--GVRAVVMDSQYLIEPCG-- 184 (237)
T ss_dssp E----TTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCCC--S--SEECCEEEEEEEEEECS--
T ss_pred C----CCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCCC--C--cEEEEEeccEEEEEECC--
Confidence 2 23334333333222 233566666653345 3466665 335655432111 1 12356889999999952
Q ss_pred CCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhH-HHHhhHhHHHHHHHHHHhhc
Q 003954 716 GHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESV-ETVNNLISCTIQKIKAAVLE 783 (784)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv-~tv~~li~~tv~~Ik~Al~~ 783 (784)
.++|.+|.-+|+=.... -+..+ ..+...+..++.+++.++.+
T Consensus 185 ---------------------~~~t~vt~~~~~Dp~G~-----iP~~ln~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 185 ---------------------SGKSRLTHICRIDLKGH-----SPEWYSKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp ---------------------TTCEEEEEEEEECCSSS-----CTTTTTTHHHHHHHHHHHHHHHTTSC
T ss_pred ---------------------CCCEEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 14788888877765543 22333 11334444588889888764
No 94
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=96.15 E-value=0.18 Score=50.72 Aligned_cols=196 Identities=9% Similarity=0.066 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEEEEEEeeecccChHHHH-Hhhhcc
Q 003954 539 KSMLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLF-DFMRDE 617 (784)
Q Consensus 539 ~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf-~FLrd~ 617 (784)
+.-++.++.....|-.-+. ...+|.... . ..++++|..+...+ .|.+. +...-+++||..|| ++|.|.
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~~-~-~~~g~~vy~~~~~~-----~g~~~--k~~~~v~~~~~~v~~~~~~d~ 89 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFEK-N-NEYGDTVYTIEVPF-----HGKTF--ILKTFLPCPAELVYQEVILQP 89 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEEE-E-CTTCCEEEEEEETT-----TEEEE--EEEEEESSCHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEEE-e-cCCCCEEEEEecCC-----CCceE--EEEEEecCCHHHHHHHHHhCc
Confidence 3444445544444443333 245898775 2 23578888876521 23344 44445699999999 999999
Q ss_pred ccchhhhhhcCCCccceeeecccCCCCCCeEEEEEcccC---C-CCCCceEEEEeeccCCCccEEEEeecCccccccccc
Q 003954 618 RMRSEWDILSNGGPLQEMVHIAKGQAPGNCASLLRAGAM---N-VNDSGMLILQETWNDSSGSLVVYAPVDVPSMSMVMN 693 (784)
Q Consensus 618 ~~R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsll~~~~~---~-~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~ 693 (784)
..|.+||...- .++.+-+| +.++.| +..+... . ...++.+++.-...+..+-++++..|+-+.+-
T Consensus 90 ~~r~~Wd~~~~--~~~vle~~----~~~t~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P---- 158 (229)
T 1em2_A 90 ERMVLWNKTVT--ACQILQRV----EDNTLI-SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP---- 158 (229)
T ss_dssp HHHTTTCTTEE--EEEEEEEE----TTTEEE-EEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEEECCCTTSC----
T ss_pred cchhhcccccc--eEEEEEec----CCCeEE-EEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEecccCCCCC----
Confidence 99999996442 22333344 222333 2222211 1 23356666665444444445556677655422
Q ss_pred CCCCC--CccccCCccEEcCCCCCCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchh-HHH-HhhH
Q 003954 694 GGDST--CVALLPSGFAILPDGYFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVES-VET-VNNL 769 (784)
Q Consensus 694 G~D~~--~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~s-v~t-v~~l 769 (784)
..+. -+.++++||.|-|... ..++|.+|.-+|+=.... + +.. +.. +...
T Consensus 159 -~~~~~VR~~~~~~g~~i~p~~~---------------------~~~~t~vt~~~~~Dp~G~----i-P~~l~n~~~~~~ 211 (229)
T 1em2_A 159 -PTHKYVRGENGPGGMIVLKSAS---------------------NPRVCTFVWILNTDLKGR----L-PRYLIHQSLAAT 211 (229)
T ss_dssp -CCTTSEECEECSEEEEEEECSS---------------------CTTCEEEEEEECEECCSS----S-CHHHHHHHHHHH
T ss_pred -CCCCCEeeeecccEEEEEecCC---------------------CCCcEEEEEEEEECCCCC----C-CHHHHHHHHHHH
Confidence 1122 2457899999998311 014788888777655442 2 223 222 2334
Q ss_pred hHHHHHHHHHHhhc
Q 003954 770 ISCTIQKIKAAVLE 783 (784)
Q Consensus 770 i~~tv~~Ik~Al~~ 783 (784)
+-.+++.++.++.+
T Consensus 212 ~~~~~~~Lr~~~~~ 225 (229)
T 1em2_A 212 MFEFAFHLRQRISE 225 (229)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44577788777653
No 95
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=94.66 E-value=0.83 Score=47.62 Aligned_cols=181 Identities=17% Similarity=0.208 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccccCCC-CC-C-ChhhhHHHHHHHHHHHHHHhhhccCCCCCCceeeecCCCCcceEE
Q 003954 502 GAPKWVATLQRQCECLAVLMSSTITVQDQ-SG-I-SPIGRKSMLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRV 578 (784)
Q Consensus 502 GA~rwla~LqR~cerla~~~~~~~~~~d~-~~-i-~~~Gr~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv 578 (784)
|-||.-.++.|-==||.-- .|-+... .+ . .++-+.+=+.|+.-.+.+...-. ...+|.... ..++|+|
T Consensus 9 ~~~r~~~a~ar~~~r~~r~---~~~~~~~~~~p~~~~w~~~~~~~l~~~n~~al~~l~---~~~gW~~~~---~~~gv~V 79 (258)
T 3fo5_A 9 GERRYREASARKKIRLDRK---YIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKMLV---AKDNWVLSS---EISQVRL 79 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHH---TCSCCCTTTSCSEEECCGGGHHHHHHHHHHHHHHHH---TCSCCEEEE---EETTEEE
T ss_pred chhhhhhhhhhhhhcccce---EEEEcccCCCCcccccCcccceecccCCHHHHHhhh---ccCCCEEEe---cCCCeEE
Confidence 3466666666654444332 3322222 21 2 34666677777766665554322 467899776 2578999
Q ss_pred EEccCCCCCCCCCccEEEEEEeeecccChHHHHHhhhccccchhhhhhcCCCccceeeecccCCCCCCeEEEEEcccC--
Q 003954 579 LTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHIAKGQAPGNCASLLRAGAM-- 656 (784)
Q Consensus 579 ~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsll~~~~~-- 656 (784)
..+.. +| .++-+...-+++||+.||++|.|...|.+||... ...+.+.+|. ..+.|- +....
T Consensus 80 y~~~~---~~-----~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~--~~~~vle~id----~~~ivY--~~~~p~~ 143 (258)
T 3fo5_A 80 YTLED---DK-----FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHY--RSVELVQQVD----EDDAIY--HVTSPAL 143 (258)
T ss_dssp EEEEC---SS-----CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTC--CEEEEEEEEE----TTEEEE--EEEECCC
T ss_pred EEEEC---CC-----ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhc--cEEEEEEEcC----CCeEEE--EEecCCc
Confidence 98642 22 4566777789999999999999999999999643 2234444442 123332 33211
Q ss_pred -CC-CCCceEEEEeeccC-CCcc-EEEE-eecCcccccccccCCCCCCc--cccCCccEEcCC
Q 003954 657 -NV-NDSGMLILQETWND-SSGS-LVVY-APVDVPSMSMVMNGGDSTCV--ALLPSGFAILPD 712 (784)
Q Consensus 657 -~~-~~~~~liLQes~td-~sgs-~vVy-APvD~~~m~~vm~G~D~~~v--~lLPSGF~I~Pd 712 (784)
+. ...+..+|.-..++ ..|. +||. -.|+-+.+- .-+.+| ..+|+||.|-|.
T Consensus 144 ~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~P-----p~~g~VR~~~~~sg~~I~P~ 201 (258)
T 3fo5_A 144 GGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHR-----ETPEYRRGETLCSGFCLWRE 201 (258)
T ss_dssp TTCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSC-----CCTTSEECCCSSEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCC-----CCCCCEEEEEcCcEEEEEEC
Confidence 11 22455555543232 3443 5443 344433321 113334 689999999995
No 96
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=94.28 E-value=0.26 Score=44.05 Aligned_cols=140 Identities=9% Similarity=-0.060 Sum_probs=77.8
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeee
Q 003954 349 ETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQH 428 (784)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~ 428 (784)
.+..|...+.++-+.|.|.+.|.+-+|.+. .++++ ..+. +|.. ..-.+.. + +.+.-+..|+....
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~----~~~~~-~~~~----~g~~--~~~~~~~--~--g~~~~~~~~~~~~~ 70 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEVE----SLEVV-AREG----ARTR--SRWVAVA--M--GKKVRWLEEEEWDD 70 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTEE----EEEEE-EEET----TEEE--EEEEEEE--T--TEEEEEEEEEEEET
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhccccc----EEEEE-EeCC----CccE--EEEEEEe--C--CceEEEEEEEEEcC
Confidence 345667788899999999999999988753 35555 3221 2321 1111222 1 22333445554432
Q ss_pred cCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHH
Q 003954 429 IEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVA 508 (784)
Q Consensus 429 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla 508 (784)
++...+. . .+++... .+.. -.-+++.++| |+|+|..+.+.....+..++.+++..-+.=+.++.+.
T Consensus 71 ~~~~i~~-~-~~~g~~~-----~~~~------~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 136 (147)
T 2d4r_A 71 ENLRNRF-F-SPEGDFD-----RYEG------TWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLK 136 (147)
T ss_dssp TTTEEEE-E-EEEESCS-----EEEE------EEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEE-E-eccCChh-----heEE------EEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 1 1221100 1111 1235677888 9999998888764334455555554444456788888
Q ss_pred HHHHHHHHH
Q 003954 509 TLQRQCECL 517 (784)
Q Consensus 509 ~LqR~cerl 517 (784)
.|.+.+|..
T Consensus 137 ~lk~~~e~~ 145 (147)
T 2d4r_A 137 GLEERVLAA 145 (147)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 888888864
No 97
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=93.04 E-value=1.3 Score=45.16 Aligned_cols=198 Identities=14% Similarity=0.164 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCceeeecCCCCcceEEEEccCCCCCCCCCccEE-EEEEeeecc-cChHHHHHhhhccc
Q 003954 541 MLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVL-CAATTVWLP-MTRQRLFDFMRDER 618 (784)
Q Consensus 541 ll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl-~A~tS~wLp-v~p~~vf~FLrd~~ 618 (784)
+-++.+..++.+-..+ ....+|.... ..++|+|..++..+ . |.++ .-++..-++ ++|+.||++|.|..
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~~---~~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~ 97 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLVV---EEGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVD 97 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEEE---EETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEEE---eCCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcc
Confidence 3344444444444333 2346899776 25789999988632 2 2221 123344456 99999999999999
Q ss_pred cchhhhhhcCCCccceeeecccCCCCCCeEEEEEcccC-CCCCCceEEEEeeccC----CC---ccEEEEeecCcccccc
Q 003954 619 MRSEWDILSNGGPLQEMVHIAKGQAPGNCASLLRAGAM-NVNDSGMLILQETWND----SS---GSLVVYAPVDVPSMSM 690 (784)
Q Consensus 619 ~R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsll~~~~~-~~~~~~~liLQes~td----~s---gs~vVyAPvD~~~m~~ 690 (784)
.|.+||...- ..+.+-.| +.++.|--...... ....++.+++.....+ .. .-+++.-.++-+.+-
T Consensus 98 ~r~~Wd~~~~--~~~vle~i----~~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P- 170 (255)
T 2e3n_A 98 VRNDWETTIE--NFHVVETL----ADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAP- 170 (255)
T ss_dssp GHHHHCCSEE--EEEEEEEE----ETTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSC-
T ss_pred hHhhhhhhcc--eeEEEEEc----CCCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCC-
Confidence 9999996421 12222222 11222332322221 1234566666643332 22 233444455544311
Q ss_pred cccCCCCCCcc-----ccCCccEEcCC-CC-CCCCCccCCCCCccccCCCCCCCCCeeeeEeeeeeecCCCcccccchhH
Q 003954 691 VMNGGDSTCVA-----LLPSGFAILPD-GY-FGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESV 763 (784)
Q Consensus 691 vm~G~D~~~v~-----lLPSGF~I~Pd-g~-~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~~~l~~~sv 763 (784)
..+.+|- .|.+||.|.|- |. .-. . ..++|.+|.-.|+=.... -+..+
T Consensus 171 ----~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~-------------~----~~~~t~vt~~~~~Dp~G~-----iP~~l 224 (255)
T 2e3n_A 171 ----LNNRCVRAKINVAMICQTLVSPPEGNQEIS-------------R----DNILCKITYVANVNPGGW-----APASV 224 (255)
T ss_dssp ----CCSSSEECEEEEEEEEEEEEC---CCCCCC-------------G----GGEEEEEEEEEEEECSSC-----CCHHH
T ss_pred ----CCCCCEEEEEEeeeeeeeEeccCCCCcccc-------------c----CCCcEEEEEEEEeCCCCc-----cCHHH
Confidence 1122222 36788888883 21 100 0 124788888877765533 22222
Q ss_pred HH--HhhHhHHHHHHHHHHh
Q 003954 764 ET--VNNLISCTIQKIKAAV 781 (784)
Q Consensus 764 ~t--v~~li~~tv~~Ik~Al 781 (784)
.. +...+-.++++++..+
T Consensus 225 vn~~~~~~~~~~l~~L~k~v 244 (255)
T 2e3n_A 225 LRAVAKREYPKFLKRFTSYV 244 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHH
Confidence 21 2333444666666654
No 98
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=86.27 E-value=8.6 Score=36.62 Aligned_cols=122 Identities=14% Similarity=0.084 Sum_probs=68.1
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeee
Q 003954 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ 427 (784)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq 427 (784)
..+.+|...+..+-+.+-|.+.|-+.+|.+ ..++++ ..+. +. +.+++.+.-. ..++-+.-|+..+
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~----~~~~v~-~~~~-----~~---~~~~~~~~~~--G~~~~~~s~~~~~ 72 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPT----EKVEIL-EEGQ-----GY---QVVRLHVDVA--GEINTWTSRRDLD 72 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSE----EEEEEE-EEET-----TE---EEEEEEEEET--TEEEEEEEEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCccc----ceEEEE-ecCC-----CE---EEEEEEEecC--CEEEEEEEEEEEe
Confidence 455677788999999999999999998884 445556 3211 11 3344443222 2233344444333
Q ss_pred ecCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeeccccccccccccc
Q 003954 428 HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLL 495 (784)
Q Consensus 428 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~ 495 (784)
-++.. +.. ..++. +++.. .+...|+ +++.++|.|+|+|.-++++....+..++.++.
T Consensus 73 ~~~~~-i~~-~~~~~--~gpf~-~~~g~w~------f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~ 129 (172)
T 3tfz_A 73 PARRV-IAY-RQLET--APIVG-HMSGEWR------AFTLDAERTQLVLTHDFVTRAAGDDGLVAGKL 129 (172)
T ss_dssp TTTTE-EEE-EEEEC--CTTEE-EEEEEEE------EEEEETTEEEEEEEEEEEECCCCTTSSBTTTB
T ss_pred CCCCE-EEE-EEeeC--CCChh-hcEEEEE------EEECCCCcEEEEEEEEEEEcChhHHHhhcccc
Confidence 22222 111 11211 11100 0111222 56666788999999999988777777766654
No 99
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=85.27 E-value=8.3 Score=36.80 Aligned_cols=110 Identities=7% Similarity=0.050 Sum_probs=64.6
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeee--cccccccceeeEEEEee
Q 003954 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQ--VLSPLVPVRQAKFLRFC 425 (784)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~--~~SpLvp~Re~~fLRyc 425 (784)
..+.+|.-.+.++-+++-|.++|-+.||.++ ..+|+ +.+ |. .+.+.|. +--- - .++-+..|+.
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~----~~~vl-~~~------~~--~~~~rl~~~~~~~-G-~~~~~ts~~~ 70 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEYA----SVEVL-GRD------DD--KVTFRLTMHPDAD-G-KVWSWVSERV 70 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSEE----EEEEE-EEC------SS--EEEEEEEECCCTT-S-CCCEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCce----EEEEE-ecC------CC--EEEEEEEEEeccC-c-eEEEEEEEEE
Confidence 4566778889999999999999999988754 46667 432 21 1334433 3221 1 2444456664
Q ss_pred eeecCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeeccc
Q 003954 426 KQHIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDES 485 (784)
Q Consensus 426 kq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~ 485 (784)
.. .++..+ +..+ ..+++ | +.+=...-+.+.++ +|+|+|.-+.++++.
T Consensus 71 ~d-~~~~~I--~~~~--~~~gP----f---~~l~g~W~f~p~~~-gt~V~~~~df~~~~~ 117 (159)
T 3tl1_A 71 AD-PVTRTV--RAQR--VETGP----F---QYMNIVWEYAETAE-GTVMRWTQDFAMKPD 117 (159)
T ss_dssp EE-TTTTEE--EEEE--SSCTT----E---EEEEEEEEEEEETT-EEEEEEEEEEEECTT
T ss_pred Ec-CCCCEE--EEEE--ccCCC----h---hhccCEEEEEECCC-CEEEEEEEEEEecCC
Confidence 33 233222 2221 11222 1 23333444677777 499999999998765
No 100
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=83.66 E-value=0.17 Score=44.16 Aligned_cols=43 Identities=9% Similarity=0.294 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccc
Q 003954 99 HRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQN 144 (784)
Q Consensus 99 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQN 144 (784)
.+||.++....-..+.... .....++|+++|+++..|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHH
Confidence 4688887765555553220 123678999999999999999743
No 101
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.25 E-value=0.41 Score=40.38 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecc
Q 003954 106 IQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQ 143 (784)
Q Consensus 106 l~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQ 143 (784)
.+.|+..|...+.+.......|+.+.+|+..||+-||-
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999994
No 102
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=81.17 E-value=18 Score=34.85 Aligned_cols=145 Identities=10% Similarity=0.089 Sum_probs=76.0
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeee
Q 003954 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ 427 (784)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq 427 (784)
..+.+|.-.+.++-+.+-|.++|-+.||.++. .+++ +.+ + +. ..+...|++..--. .++|..-|.+
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~----~~~~-~~~--~---~~-~~~~l~~~~~~~G~-~~~~ts~~~~-- 71 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEYAE----AEIL-RQD--G---DG-FDFRLKTRPDANGR-VWEWVSHRVP-- 71 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTEEE----EEEE-EEE--T---TE-EEEEEEECCCTTSC-CCEEEEEEEE--
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhheeE----EEEE-ecC--C---CE-EEEEEEEEecCCCe-EEEEEEEEEE--
Confidence 34566777888999999999999999988654 4455 321 1 11 11222222332221 2333333322
Q ss_pred ecCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHH
Q 003954 428 HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWV 507 (784)
Q Consensus 428 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwl 507 (784)
-.++..+.... ..+++ | +.+=...-+.+.++| |+|+|.-+.++++...-. .+.+...+.=..+..|
T Consensus 72 d~~~~~I~~~~----l~~gP----f---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~--~~~~~~av~~~~~~~L 137 (169)
T 3tvq_A 72 DKGSRTVRAHR----VETGP----F---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPFD--NAHMTAHLNTTTRANM 137 (169)
T ss_dssp EGGGTEEEEEE----SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSC--HHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEE----cCCCC----h---hheeeEEEEEECCCC-EEEEEEEEEEecCCCccc--HHHHHHHHHhhHHHHH
Confidence 12232222211 11111 1 222234556788888 999999999987542111 1111111111124458
Q ss_pred HHHHHHHHHHHHh
Q 003954 508 ATLQRQCECLAVL 520 (784)
Q Consensus 508 a~LqR~cerla~~ 520 (784)
+.|.+.+|+.+..
T Consensus 138 ~~LK~~aE~~~~~ 150 (169)
T 3tvq_A 138 ERIKKIIEDRHRE 150 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhh
Confidence 8888888887763
No 103
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=79.74 E-value=15 Score=34.59 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=68.4
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeee
Q 003954 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ 427 (784)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq 427 (784)
..+.+|.-.+..+-+.+.|.++|...||..+.- +-. . +|..+.+.+++.+-. ...|+-|..||...
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~----~~~-~-------~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~ 75 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKL----VDL-G-------NNAYRWEMEKVGVDK--HAIQSVYACTYHAD 75 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE----EEE-E-------TTEEEEEECCBSSGG--GCBCCEEEEEEEEE
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE----EEc-C-------CCceEEEEEEEeeee--EEEEEEEEEEEEEc
Confidence 345678888999999999999999999987764 222 1 234444445665433 23488888998765
Q ss_pred ecCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeec
Q 003954 428 HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYD 483 (784)
Q Consensus 428 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d 483 (784)
-++. .+ +..+. +++ +. +.+-.-.-+++.++|.|+|+|.-+.|..
T Consensus 76 ~~~~-~I--~~~~~---~g~----~~--~~l~g~w~f~p~~~g~t~V~~~~~~e~~ 119 (161)
T 3p9v_A 76 KEAG-KI--TWSPI---KGE----GN--GVVSGSWTLSAKGDNATAVKFQTSAELT 119 (161)
T ss_dssp TTTT-EE--EEEEC---TTS----TT--EEEEEEEEEEESSSSCEEEEEEEEEEEE
T ss_pred CCCC-EE--EEEEe---cCc----cc--eeEEEEEEEEECCCCeEEEEEEEEEEEc
Confidence 4333 22 22221 111 10 0111123357778888999999988886
No 104
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=77.20 E-value=5.3 Score=36.74 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=80.2
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeee
Q 003954 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ 427 (784)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq 427 (784)
+.+..|...+..+-+.+.|.+.|-+.+|.+.. ++|+ ..+..| +|. -+.+++.+-- -+.++-+..|++.+
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~----~~v~-~~~~~~--g~~--~~~~~~~~~~--~~~~~~~~~~v~~~ 73 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITG----MRTW-NGRVDG--AVS--TVDAEAQVGF--SFLREKFATRVRRD 73 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCC----CCEE-EEEEET--TEE--EEEEEEECST--TSSCCEEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcCe----eEEE-EecCCC--CCc--eEEEEEEEEe--cceeEEEEEEEEEc
Confidence 34567777889999999999999999888755 3555 322211 112 2455555522 34566677788753
Q ss_pred ecCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHH
Q 003954 428 HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWV 507 (784)
Q Consensus 428 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwl 507 (784)
-.+ ..|.-..+++... .+...|+ +++.++| |+|++.-++|+... ++..+...-+.-.+++.+
T Consensus 74 ~~~--~~i~~~~~~G~f~-----~~~g~w~------f~~~~~g-t~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~ 135 (148)
T 1t17_A 74 KDA--RSIDVSLLYGPFK-----RLNNGWR------FMPEGDA-TRVEFVIEFAFKSA----LLDAMLAANVDRAAGKLI 135 (148)
T ss_dssp TTT--CEEEEEESSTTSS-----CEEEEEE------EEEETTE-EEEEEEEEECCSCH----HHHHHHHHHHHHHHHHHH
T ss_pred CCC--cEEEEEECCCChh-----ccEEEEE------EEECCCC-eEEEEEEEEEECcH----HHHHHHHHHHHHHHHHHH
Confidence 333 2233333443110 1122333 3567778 99999988887522 223333222233456667
Q ss_pred HHHHHHHHHH
Q 003954 508 ATLQRQCECL 517 (784)
Q Consensus 508 a~LqR~cerl 517 (784)
.++.+.|+.+
T Consensus 136 ~~f~~r~~~~ 145 (148)
T 1t17_A 136 ACFEARAQQL 145 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666643
No 105
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=69.92 E-value=5.6 Score=35.15 Aligned_cols=69 Identities=22% Similarity=0.216 Sum_probs=45.1
Q ss_pred CCCcceEEeeccchhhHHHHHHHhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHH
Q 003954 132 GLESKQIKFWFQNRRTQMKTQMERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARL 211 (784)
Q Consensus 132 gLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~L 211 (784)
||+..+|.-|=|-||+-.-|.........--++...|..++..|. .+.++|+.||+++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~----------------------~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLI----------------------QQVEQLKQEVSRL 74 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
Confidence 677777777666666554444444444444455666767766665 4566788999999
Q ss_pred HHHHhhhhhhh
Q 003954 212 KDELGRICILA 222 (784)
Q Consensus 212 k~el~r~~~~~ 222 (784)
+.|++.+....
T Consensus 75 ~~e~d~~k~k~ 85 (90)
T 2wt7_B 75 ARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99887665443
No 106
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=68.52 E-value=2.3 Score=44.16 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=24.9
Q ss_pred HHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHh
Q 003954 160 ILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (784)
Q Consensus 160 ~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~ 216 (784)
.+++||++|+.||..|++.+ .+.++|+.||++||+.|.
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~-------------------~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLE-------------------SEVADLKKENKDLKESLD 60 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhc
Confidence 35566666677766666555 455678889999998764
No 107
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=55.80 E-value=30 Score=28.29 Aligned_cols=41 Identities=34% Similarity=0.371 Sum_probs=31.0
Q ss_pred HhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHh
Q 003954 154 ERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (784)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~ 216 (784)
+......+..+.+.|..+|..|...+ ..|..|+..||+-+.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i----------------------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERA----------------------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHh
Confidence 45566778888999999998888544 468888888887653
No 108
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.64 E-value=29 Score=27.94 Aligned_cols=40 Identities=28% Similarity=0.262 Sum_probs=29.4
Q ss_pred HhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHH
Q 003954 154 ERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDEL 215 (784)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el 215 (784)
+......+..+.+.|..+|..|... .+.|+.|++.|+..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~----------------------i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSE----------------------VTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHh
Confidence 4455667888888888888888743 446888888888765
No 109
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.02 E-value=19 Score=31.16 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=16.9
Q ss_pred hhhhhHhhHHHHHHHh----hhhhhhhc
Q 003954 201 LQQLRIENARLKDELG----RICILANK 224 (784)
Q Consensus 201 ~q~L~~eNa~Lk~el~----r~~~~~~~ 224 (784)
...|..||.+|++|.. |+.++..+
T Consensus 50 ~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3458899999999985 44444443
No 110
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=52.85 E-value=25 Score=30.74 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=10.0
Q ss_pred HHHHHhhHHHHHhHHHHH
Q 003954 159 IILRQEHDKLRAENEMLK 176 (784)
Q Consensus 159 ~~l~~e~~~l~~en~~l~ 176 (784)
..+....+.|..||..|+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr 56 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQ 56 (87)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555566666665555
No 111
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=48.17 E-value=35 Score=28.63 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=9.3
Q ss_pred hhhhhhHhhHHHHHHHh
Q 003954 200 ELQQLRIENARLKDELG 216 (784)
Q Consensus 200 e~q~L~~eNa~Lk~el~ 216 (784)
+.+.|+.++..|..|+.
T Consensus 51 en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 51 ENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555666665554
No 112
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=47.25 E-value=1.7e+02 Score=26.64 Aligned_cols=118 Identities=9% Similarity=0.083 Sum_probs=61.9
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEE--EEeeee
Q 003954 350 TGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKF--LRFCKQ 427 (784)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~f--LRyckq 427 (784)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++ . +|.. ...+.+. .-+.+.-+. .+|...
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~-~-------~~~~---~~~~~~~--~g~~~~~~~~~~~~~~~ 70 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELI-G-------EDKY---KADLQIG--IAAVKGKYDAIIEVTDI 70 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEE-E-------TTEE---EEEEEEC--CGGGCEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEe-C-------CCeE---EEEEEEE--eeeEEEEEEEEEEEEec
Confidence 4467778889999999999999988874 456666 2 1221 1222221 112222222 244433
Q ss_pred ecCCeEEEEEEeccCCCCCCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeeccccccccccccc
Q 003954 428 HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLL 495 (784)
Q Consensus 428 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~ 495 (784)
-....|++.-..-+. . ++... ---+-+.+..+|.|+|+|.-.+++... +..+..+++
T Consensus 71 ~~~~~~~~~~~~~~~---~----~~~~~---~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~ 127 (162)
T 2pcs_A 71 KPPYHYKLLVNGEGG---P----GFVNA---EGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRML 127 (162)
T ss_dssp ETTTEEEEEEEEEET---T----EEEEE---EEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHH
T ss_pred CCCcEEEEEEEecCC---C----ccEEE---EEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHH
Confidence 444555544333221 0 11111 111335666778899999877776432 234444444
No 113
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=45.90 E-value=3.6 Score=37.52 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=18.2
Q ss_pred hhhhhhhHhhHHHHHHHhhhhhh
Q 003954 199 YELQQLRIENARLKDELGRICIL 221 (784)
Q Consensus 199 ~e~q~L~~eNa~Lk~el~r~~~~ 221 (784)
.+.++|..||+.|+.|++++...
T Consensus 72 ~e~e~L~~En~~l~~E~~~lk~k 94 (107)
T 3a5t_A 72 QEVEKLASENASMKLELDALRSK 94 (107)
T ss_dssp STTTTTTSTTSHHHHTTTSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999876543
No 114
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=45.38 E-value=13 Score=31.64 Aligned_cols=45 Identities=13% Similarity=0.314 Sum_probs=31.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeec
Q 003954 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWF 142 (784)
Q Consensus 93 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWF 142 (784)
++|+.+..|+.++....-+.+... . ...++|+++|+++..|..|.
T Consensus 15 ~~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 15 KGKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp CCSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 344566789998865555555432 1 25688999999999998885
No 115
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=44.33 E-value=12 Score=25.30 Aligned_cols=17 Identities=41% Similarity=0.728 Sum_probs=13.7
Q ss_pred hhhhHhhHHHHHHHhhh
Q 003954 202 QQLRIENARLKDELGRI 218 (784)
Q Consensus 202 q~L~~eNa~Lk~el~r~ 218 (784)
++|+..|+|||+|+.-+
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 46889999999998543
No 116
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=43.64 E-value=7.8 Score=30.53 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecc
Q 003954 98 YHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQ 143 (784)
Q Consensus 98 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQ 143 (784)
|..||.++.......++.. ........++|+++|+++..|..|.+
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 3468898877775555433 22122256899999999999999964
No 117
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=43.46 E-value=16 Score=34.89 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=27.7
Q ss_pred EEEEeeecccChHHHHHhhhccccchhhhh
Q 003954 596 CAATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (784)
Q Consensus 596 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 625 (784)
+...|+-+..||+.||+|++|...-.+|..
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 568899999999999999999999999984
No 118
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=38.60 E-value=15 Score=32.99 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhh
Q 003954 97 KYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRT 147 (784)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRa 147 (784)
+|.+||.++...+-..+..+.... ..++|+++|+++..|.-|.++++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 467899999887777775554433 346899999999999988765443
No 119
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=38.56 E-value=35 Score=27.57 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=14.7
Q ss_pred HhhhhHHHHHhhHHHHHhHHHHH
Q 003954 154 ERHENIILRQEHDKLRAENEMLK 176 (784)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ 176 (784)
+......|..+.+.|..+|..|.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~ 42 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELA 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777777776666
No 120
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=36.68 E-value=17 Score=31.92 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=25.4
Q ss_pred EEEeeecccChHHHHHhhhccccchhhhh
Q 003954 597 AATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (784)
Q Consensus 597 A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 625 (784)
...+..++.||+.||++|.|..+..+|.-
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEEeCCCHHHHHHHHhChhhhhhhcc
Confidence 35678899999999999999999999963
No 121
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.55 E-value=73 Score=24.28 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=13.9
Q ss_pred hhhhhhhHhhHHHHHHHhhhhh
Q 003954 199 YELQQLRIENARLKDELGRICI 220 (784)
Q Consensus 199 ~e~q~L~~eNa~Lk~el~r~~~ 220 (784)
.++|.|..--+.|++|+.|+..
T Consensus 24 rdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 24 RDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHHH
Confidence 3455566566677777777654
No 122
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=36.26 E-value=52 Score=28.16 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=7.6
Q ss_pred HHHhhHHHHHhHHHHH
Q 003954 161 LRQEHDKLRAENEMLK 176 (784)
Q Consensus 161 l~~e~~~l~~en~~l~ 176 (784)
+....+.|..||..|+
T Consensus 41 ~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 41 TQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555554444
No 123
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=35.74 E-value=1.4 Score=42.49 Aligned_cols=31 Identities=3% Similarity=-0.104 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHH
Q 003954 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEK 122 (784)
Q Consensus 92 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~ 122 (784)
.+.||.|+.|+.+|++.|+..|+.++||...
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 3557888999999999999999999999753
No 124
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=34.15 E-value=63 Score=28.89 Aligned_cols=56 Identities=27% Similarity=0.234 Sum_probs=31.1
Q ss_pred HHhhhhHHHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHh
Q 003954 153 MERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (784)
Q Consensus 153 ~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~ 216 (784)
..-+++-.|...++++..||..++..-... | .-..+.. .+..+|+.||.+|++|-+
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~----~---~~v~eLe-~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRL----D---ARVRELE-LELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc----h---hhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344566666666777777776666542110 0 0000111 355588888888888754
No 125
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=31.96 E-value=12 Score=27.46 Aligned_cols=43 Identities=12% Similarity=0.293 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhh
Q 003954 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRT 147 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRa 147 (784)
.++.++...+...+... ....++|+.+|++..-|..|++....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 35666666665556543 23568999999999999999875443
No 126
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=31.84 E-value=18 Score=33.41 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=25.4
Q ss_pred EEEeeecccChHHHHHhhhccccchhhh
Q 003954 597 AATTVWLPMTRQRLFDFMRDERMRSEWD 624 (784)
Q Consensus 597 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 624 (784)
...++.++.||++||++|.|..+..+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3567889999999999999999999996
No 127
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=31.05 E-value=27 Score=31.67 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=26.4
Q ss_pred EEEEeeecccChHHHHHhhhccccchhhh
Q 003954 596 CAATTVWLPMTRQRLFDFMRDERMRSEWD 624 (784)
Q Consensus 596 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd 624 (784)
....+..++.||++||++|.|..+..+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 56678899999999999999999999996
No 128
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=30.59 E-value=19 Score=30.68 Aligned_cols=47 Identities=6% Similarity=0.155 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
.++..|.+.|...|-.. ..-.++|+.||+++..|+.+...-|.|.|+
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47778888887755333 236789999999999999876655555444
No 129
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.31 E-value=1.3e+02 Score=24.37 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=17.8
Q ss_pred HhhhhHHHHHhhHHHHHhHHHHHHhc
Q 003954 154 ERHENIILRQEHDKLRAENEMLKDAM 179 (784)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ea~ 179 (784)
+......|..+.+.|..+|..|...+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667778888888887777443
No 130
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=29.48 E-value=30 Score=32.12 Aligned_cols=30 Identities=13% Similarity=0.044 Sum_probs=26.7
Q ss_pred EEEEeeecccChHHHHHhhhccccchhhhh
Q 003954 596 CAATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (784)
Q Consensus 596 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 625 (784)
....|+.++.|++.||+|+.|..+-.+|--
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p 34 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLMT 34 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHST
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHhh
Confidence 346788999999999999999999999963
No 131
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.21 E-value=30 Score=30.78 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q 003954 181 NPTCNNCGGPAV 192 (784)
Q Consensus 181 ~~~C~~Cg~p~~ 192 (784)
+..||.||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 556999998764
No 132
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=28.36 E-value=28 Score=31.67 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=26.6
Q ss_pred EEEeeecccChHHHHHhhhccccchhhhhhc
Q 003954 597 AATTVWLPMTRQRLFDFMRDERMRSEWDILS 627 (784)
Q Consensus 597 A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls 627 (784)
...|..++.||+.||+++.|-.+..+|---+
T Consensus 4 ~~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~ 34 (148)
T 1t17_A 4 HVVTKVLPYTPDQLFELVGDVDAYPKFVPWI 34 (148)
T ss_dssp EEEEEEESSCTHHHHHHHTTTTCCSSCCSSC
T ss_pred EEEEEEecCCHHHHHHHHHHHhhHHhhCCCc
Confidence 3568899999999999999999999997443
No 133
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=27.00 E-value=38 Score=30.00 Aligned_cols=28 Identities=7% Similarity=0.222 Sum_probs=25.2
Q ss_pred EEEEeeecccChHHHHHhhhccccchhh
Q 003954 596 CAATTVWLPMTRQRLFDFMRDERMRSEW 623 (784)
Q Consensus 596 ~A~tS~wLpv~p~~vf~FLrd~~~R~eW 623 (784)
....+..++.||++||++|.|..+..+|
T Consensus 6 ~i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 6 IAQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 3457788999999999999999999999
No 134
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.59 E-value=1e+02 Score=24.37 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=27.5
Q ss_pred HHHHhhHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCchhhhhhhHhhHHHHHHHhhhh
Q 003954 160 ILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRIC 219 (784)
Q Consensus 160 ~l~~e~~~l~~en~~l~ea~~~~~C~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~el~r~~ 219 (784)
.++.++..|.+.|..|.+.+. +-+.|-..|++|++++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~----------------------~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK----------------------EARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHhh
Confidence 366677777788877776663 35677788888888764
No 135
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=25.64 E-value=41 Score=30.11 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=24.4
Q ss_pred EEeeecccChHHHHHhhhccccchhhh
Q 003954 598 ATTVWLPMTRQRLFDFMRDERMRSEWD 624 (784)
Q Consensus 598 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 624 (784)
..+..++.||++||+.|-|..+..+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 467788999999999999999999994
No 136
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=25.04 E-value=42 Score=30.54 Aligned_cols=28 Identities=4% Similarity=0.145 Sum_probs=24.6
Q ss_pred EEEeeecccChHHHHHhhhccccchhhh
Q 003954 597 AATTVWLPMTRQRLFDFMRDERMRSEWD 624 (784)
Q Consensus 597 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 624 (784)
-..+.-++.||++||+.|-|+.+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456788999999999999999999993
No 137
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=24.18 E-value=3.8e+02 Score=23.76 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=23.1
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccc
Q 003954 350 TGMVIINSSALIETMMDANRWAEMFPCM 377 (784)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~i 377 (784)
+..|...+.++-+.|.|.+.|.+-+|.+
T Consensus 18 ~~~i~ap~e~Vw~~l~D~~~~~~w~p~~ 45 (157)
T 2ns9_A 18 SFEVSKTPEEVFEFLTDPKRFSRAFPGF 45 (157)
T ss_dssp EEEESSCHHHHHHHHTCHHHHGGGSTTE
T ss_pred EEEEcCCHHHHHHHHcCHHHHHhhCCCc
Confidence 3455667889999999999999999975
No 138
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.93 E-value=53 Score=29.50 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.+++.|...+...|... ..-.++|..+|+++.-|+.|.+.-|.+.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 57888888888875433 23578999999999999998876666665543
No 139
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=23.92 E-value=46 Score=31.43 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=26.6
Q ss_pred EEEEeeecccChHHHHHhhhccccchhhh
Q 003954 596 CAATTVWLPMTRQRLFDFMRDERMRSEWD 624 (784)
Q Consensus 596 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd 624 (784)
....|+.++.||+.||+++.|-....+|-
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~ 34 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIF 34 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHC
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhC
Confidence 56788999999999999999999999996
No 140
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.94 E-value=29 Score=24.77 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccc
Q 003954 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQN 144 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQN 144 (784)
.++.++...+...+... + ...++|+.+|++..-|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777775555555433 2 2568999999999998888643
No 141
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=22.78 E-value=1e+02 Score=28.35 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHhCCCcc
Q 003954 97 KYHRHTPHQIQELESFFKE-----CPHPDEKQRSELSRRLGLESK 136 (784)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~-----~~~Ps~~~R~eLA~~LgLs~r 136 (784)
+|..+|.+|++.|+..|.. +-+.+..+-..+.+.||..+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3467999999999999954 568888888888888887664
No 142
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=22.70 E-value=1.8e+02 Score=27.31 Aligned_cols=123 Identities=10% Similarity=0.124 Sum_probs=0.0
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeee
Q 003954 349 ETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQH 428 (784)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~ 428 (784)
.+..|...+.++-++|.|-..| +-+|.++..+.. ..|.+++.-|++..+ - -..+| .++.|-...
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~-----~eg~~~~~vGsvR~~-------g--g~v~E-rl~~~D~~~ 69 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCKK-----VGGGGGYSVGARRLL-------N--GEFLD-TLIAYSEIE 69 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEEE-----ESSCCTTCTTCEEEE-------T--TTEEE-EEEEEETTT
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceEEEEE-----EecCCCCCCCCEEEE-------C--CEEEE-EEEEEcCCC
Q ss_pred cCCeEEEEEEeccCCCCCCCCCCccc-----eeecCCcceEeeCC-CCccEEEEEEeeeecccccccccccccccccc
Q 003954 429 IEGVWAVVDVSIDTNREGLSADPFQT-----YRRLPSGFVVQDVP-NNYSKVTWIEHAEYDESIVHHLCRPLLSSGMG 500 (784)
Q Consensus 429 ~~g~w~VvDvS~d~~~~~~~~~~~~~-----~~r~PSGclIq~~~-nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~a 500 (784)
--=+|-|++ +. .. .+..=+=.-+.+.+ +|.|.|+|--.++..+..+....+.+|..|+.
T Consensus 70 ~~~sY~ii~--------g~-----l~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~~~~~~~~~~~~~~~L~ 134 (160)
T 3p51_A 70 RRIMYSMDE--------GP-----SPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESASTEAVEYMNTVYRSLLA 134 (160)
T ss_dssp TEEEEEEEE--------CS-----TTSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESCSHHHHHHHHHHHHHHH
T ss_pred cEEEEEEec--------CC-----CcccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCHHHHHHHHHHHHHHHHH
No 143
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=22.11 E-value=60 Score=29.00 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHH
Q 003954 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (784)
.+++.|...+...|-.. ..-.++|..+|+++.-|+.+...-|.+-|+..
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47788888887775433 23578999999999999988776666655443
No 144
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.97 E-value=41 Score=30.34 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHH
Q 003954 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr 151 (784)
.+++.|...+. .|- ....-.++|+.||+++..|+.+.+.-|.+.|+
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46777777776 332 22346789999999999998776544444443
No 145
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.59 E-value=1e+02 Score=24.40 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=4.8
Q ss_pred hhHhhHHHHHHH
Q 003954 204 LRIENARLKDEL 215 (784)
Q Consensus 204 L~~eNa~Lk~el 215 (784)
|+.||+.||.++
T Consensus 24 Lk~E~~eLk~k~ 35 (53)
T 2yy0_A 24 LRLELAEMKEKY 35 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 146
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.92 E-value=30 Score=28.92 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=32.9
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchh
Q 003954 96 KKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRR 146 (784)
Q Consensus 96 R~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRR 146 (784)
+.-..+|+.|.+.|...++. ..-.++|+.+|+++.-|+.+.++-+
T Consensus 17 ~~~~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 17 RDVNQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp CCGGGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33456999999999885432 2367899999999999886654333
No 147
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=20.13 E-value=23 Score=27.88 Aligned_cols=44 Identities=14% Similarity=-0.035 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhH
Q 003954 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ 148 (784)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak 148 (784)
.+++.|...|...|-.. ..-.++|..+|+++..|+.+...-|.+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDA 58 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 47888999998876433 235789999999999888766543333
Done!