Query 003956
Match_columns 784
No_of_seqs 249 out of 1112
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 09:30:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cpi_A CCR4-NOT transcription 99.8 6.3E-21 2.1E-25 168.0 10.4 103 98-202 4-106 (111)
2 4fxv_A ELAV-like protein 1; RN 99.7 1.6E-16 5.4E-21 138.7 10.3 80 108-195 18-97 (99)
3 3bs9_A Nucleolysin TIA-1 isofo 99.6 9E-16 3.1E-20 127.4 9.8 81 109-197 6-86 (87)
4 2lxi_A RNA-binding protein 10; 99.6 1.6E-16 5.6E-21 136.2 5.4 82 109-198 1-84 (91)
5 3s8s_A Histone-lysine N-methyl 99.6 1.1E-15 3.9E-20 136.0 10.7 81 108-196 5-85 (110)
6 3md1_A Nuclear and cytoplasmic 99.6 1.3E-15 4.6E-20 125.4 10.4 79 111-197 3-81 (83)
7 4f25_A Polyadenylate-binding p 99.6 1.1E-15 3.8E-20 135.6 10.0 81 109-199 5-85 (115)
8 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.3E-15 4.5E-20 125.9 9.5 79 108-194 6-84 (85)
9 2do4_A Squamous cell carcinoma 99.6 3.1E-15 1.1E-19 128.0 12.0 84 105-197 13-96 (100)
10 2dnz_A Probable RNA-binding pr 99.6 2.5E-15 8.6E-20 126.9 11.2 83 109-199 5-87 (95)
11 1p27_B RNA-binding protein 8A; 99.6 1.6E-15 5.3E-20 130.9 10.0 85 105-197 19-103 (106)
12 1whw_A Hypothetical protein ri 99.6 2E-15 6.7E-20 128.8 10.4 84 108-199 7-90 (99)
13 2cqc_A Arginine/serine-rich sp 99.6 2E-15 7E-20 127.1 10.0 81 108-196 14-94 (95)
14 2e5h_A Zinc finger CCHC-type a 99.6 3.2E-15 1.1E-19 126.1 11.0 82 105-194 12-93 (94)
15 2x1f_A MRNA 3'-END-processing 99.6 2.3E-15 7.7E-20 128.3 10.2 82 109-198 2-83 (96)
16 4a8x_A RNA-binding protein wit 99.6 1.7E-15 5.8E-20 125.7 8.5 83 108-197 3-85 (88)
17 3ns6_A Eukaryotic translation 99.6 6.6E-16 2.3E-20 134.0 6.1 81 109-197 6-93 (100)
18 2dgs_A DAZ-associated protein 99.6 4.8E-15 1.6E-19 126.7 11.2 83 108-199 9-91 (99)
19 2cq0_A Eukaryotic translation 99.6 3E-15 1E-19 128.8 9.9 83 108-198 14-96 (103)
20 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2E-15 6.7E-20 129.4 8.7 84 108-199 11-94 (102)
21 1x5u_A Splicing factor 3B subu 99.6 3.5E-15 1.2E-19 128.5 10.3 86 108-201 14-99 (105)
22 2lkz_A RNA-binding protein 5; 99.6 1.4E-15 4.7E-20 133.2 7.8 80 109-196 9-94 (95)
23 3p5t_L Cleavage and polyadenyl 99.6 8.8E-16 3E-20 130.0 6.2 81 109-197 1-83 (90)
24 2ywk_A Putative RNA-binding pr 99.6 3.2E-15 1.1E-19 126.2 9.7 80 108-196 15-94 (95)
25 2la6_A RNA-binding protein FUS 99.6 3.6E-15 1.2E-19 127.7 10.1 80 108-195 12-99 (99)
26 2dgo_A Cytotoxic granule-assoc 99.6 3.7E-15 1.3E-19 130.5 10.2 83 108-198 14-96 (115)
27 2dnh_A Bruno-like 5, RNA bindi 99.6 5.4E-15 1.8E-19 127.3 11.0 82 108-198 14-98 (105)
28 2d9p_A Polyadenylate-binding p 99.6 5E-15 1.7E-19 127.4 10.7 81 108-198 14-94 (103)
29 2cqi_A Nucleolysin TIAR; RNA r 99.6 4.5E-15 1.5E-19 127.7 10.3 81 108-198 14-94 (103)
30 2cq3_A RNA-binding protein 9; 99.6 6.3E-15 2.1E-19 126.8 11.2 82 108-199 14-95 (103)
31 1x5s_A Cold-inducible RNA-bind 99.6 3.1E-15 1.1E-19 128.2 9.1 83 108-198 11-93 (102)
32 2cph_A RNA binding motif prote 99.6 5.1E-15 1.8E-19 127.5 10.3 82 108-197 14-97 (107)
33 1x5t_A Splicing factor 3B subu 99.6 2.7E-15 9.3E-20 126.9 8.2 82 109-198 5-87 (96)
34 1oo0_B CG8781-PA, drosophila Y 99.6 4.4E-15 1.5E-19 129.1 9.6 84 106-197 23-106 (110)
35 2a3j_A U1 small nuclear ribonu 99.6 3.9E-15 1.3E-19 136.9 9.7 83 108-198 28-111 (127)
36 1x4h_A RNA-binding protein 28; 99.6 5.8E-15 2E-19 128.0 10.1 85 107-199 13-103 (111)
37 3ulh_A THO complex subunit 4; 99.6 6E-15 2E-19 127.4 10.1 79 108-195 28-106 (107)
38 2dnm_A SRP46 splicing factor; 99.6 3.7E-15 1.3E-19 128.2 8.8 83 108-198 12-94 (103)
39 1fxl_A Paraneoplastic encephal 99.6 1.3E-14 4.4E-19 130.4 12.6 105 109-237 2-111 (167)
40 2cpf_A RNA binding motif prote 99.6 4.5E-15 1.5E-19 126.3 9.0 86 108-198 4-89 (98)
41 3ucg_A Polyadenylate-binding p 99.6 5.8E-15 2E-19 123.0 9.2 82 108-198 5-86 (89)
42 2cpz_A CUG triplet repeat RNA- 99.6 5.1E-15 1.7E-19 129.9 9.2 83 108-198 24-106 (115)
43 1p1t_A Cleavage stimulation fa 99.6 4.9E-15 1.7E-19 127.1 8.8 84 109-200 8-91 (104)
44 2dgx_A KIAA0430 protein; RRM d 99.6 5.4E-15 1.9E-19 126.8 9.1 81 109-197 9-90 (96)
45 2err_A Ataxin-2-binding protei 99.6 4.8E-15 1.7E-19 130.3 8.8 81 108-198 28-108 (109)
46 2cpe_A RNA-binding protein EWS 99.6 7.1E-15 2.4E-19 128.4 9.5 86 105-198 11-104 (113)
47 2jrs_A RNA-binding protein 39; 99.6 7.8E-15 2.7E-19 129.3 9.8 81 109-197 26-106 (108)
48 2fy1_A RNA-binding motif prote 99.6 8.6E-15 3E-19 130.5 10.1 81 108-197 6-86 (116)
49 2kt5_A RNA and export factor-b 99.6 1.1E-14 3.6E-19 129.7 10.5 85 107-200 33-117 (124)
50 2dgp_A Bruno-like 4, RNA bindi 99.6 7.3E-15 2.5E-19 126.7 8.9 84 108-199 12-98 (106)
51 2do0_A HnRNP M, heterogeneous 99.6 1.4E-14 4.8E-19 126.4 10.7 79 109-196 15-93 (114)
52 1b7f_A Protein (SXL-lethal pro 99.6 1.8E-14 6.2E-19 130.2 11.6 110 109-237 3-112 (168)
53 2kxn_B Transformer-2 protein h 99.6 8.7E-15 3E-19 133.4 9.5 83 108-198 45-127 (129)
54 1u6f_A Tcubp1, RNA-binding pro 99.6 1.6E-14 5.5E-19 130.3 11.1 84 108-199 41-124 (139)
55 1x4a_A Splicing factor, argini 99.6 1.8E-14 6.3E-19 125.3 11.0 81 107-198 20-100 (109)
56 3ex7_B RNA-binding protein 8A; 99.6 8.7E-15 3E-19 130.1 9.2 85 106-198 19-103 (126)
57 1s79_A Lupus LA protein; RRM, 99.6 9.8E-15 3.4E-19 128.9 9.3 80 107-196 9-88 (103)
58 2ek1_A RNA-binding protein 12; 99.6 4.3E-15 1.5E-19 125.5 6.7 79 109-195 15-93 (95)
59 1why_A Hypothetical protein ri 99.6 1.9E-14 6.5E-19 122.8 10.8 82 102-197 10-93 (97)
60 2khc_A Testis-specific RNP-typ 99.6 7.4E-15 2.5E-19 129.1 8.5 79 108-194 39-117 (118)
61 1x4e_A RNA binding motif, sing 99.5 4.1E-15 1.4E-19 123.6 6.3 79 109-195 5-83 (85)
62 2div_A TRNA selenocysteine ass 99.5 6.9E-15 2.4E-19 125.4 7.6 82 108-197 8-94 (99)
63 2dgv_A HnRNP M, heterogeneous 99.5 1.5E-14 5E-19 121.6 9.3 80 109-198 8-87 (92)
64 2cq4_A RNA binding motif prote 99.5 1.2E-14 4.2E-19 127.3 9.0 84 105-197 21-104 (114)
65 2ki2_A SS-DNA binding protein 99.5 2.7E-15 9.2E-20 125.9 4.6 83 110-201 2-84 (90)
66 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.3E-14 4.4E-19 129.9 9.3 79 108-194 62-140 (140)
67 3md3_A Nuclear and cytoplasmic 99.5 2.3E-14 7.7E-19 128.7 10.9 102 111-237 2-110 (166)
68 2cpj_A Non-POU domain-containi 99.5 1.6E-14 5.6E-19 123.6 9.6 80 106-199 12-91 (99)
69 2mss_A Protein (musashi1); RNA 99.5 7.6E-15 2.6E-19 119.3 7.0 75 111-194 1-75 (75)
70 2dhg_A TRNA selenocysteine ass 99.5 1.2E-14 4.2E-19 124.9 8.4 82 108-198 8-91 (104)
71 2cqp_A RNA-binding protein 12; 99.5 6.9E-15 2.4E-19 125.2 6.8 81 109-197 15-95 (98)
72 2krb_A Eukaryotic translation 99.5 6.7E-15 2.3E-19 122.1 6.2 73 110-192 2-81 (81)
73 1x5o_A RNA binding motif, sing 99.5 5.8E-14 2E-18 122.7 12.5 82 106-196 22-111 (114)
74 3n9u_C Cleavage and polyadenyl 99.5 9.9E-15 3.4E-19 137.6 7.8 84 108-199 54-139 (156)
75 1h2v_Z 20 kDa nuclear CAP bind 99.5 3E-14 1E-18 131.4 10.8 82 108-197 38-119 (156)
76 2dis_A Unnamed protein product 99.5 1.7E-14 5.7E-19 125.0 8.4 82 108-197 7-92 (109)
77 1wi8_A EIF-4B, eukaryotic tran 99.5 2.5E-14 8.4E-19 123.5 9.3 82 108-198 14-95 (104)
78 2la4_A Nuclear and cytoplasmic 99.5 1.5E-14 5.1E-19 124.0 7.8 75 109-197 27-101 (101)
79 2cqd_A RNA-binding region cont 99.5 3E-14 1E-18 125.2 9.8 83 106-197 14-96 (116)
80 3s7r_A Heterogeneous nuclear r 99.5 3.5E-14 1.2E-18 118.4 9.7 78 108-194 10-87 (87)
81 3lqv_A PRE-mRNA branch site pr 99.5 2.9E-14 1E-18 124.8 9.6 79 109-198 8-86 (115)
82 2qfj_A FBP-interacting repress 99.5 5.7E-14 2E-18 132.2 12.3 118 109-237 28-148 (216)
83 4f02_A Polyadenylate-binding p 99.5 5.9E-14 2E-18 135.3 12.6 106 108-237 14-126 (213)
84 2nlw_A Eukaryotic translation 99.5 1.7E-14 5.8E-19 125.8 8.1 78 109-196 15-99 (105)
85 1sjq_A Polypyrimidine tract-bi 99.5 1.3E-14 4.5E-19 130.8 7.6 78 109-200 16-95 (105)
86 2diu_A KIAA0430 protein; struc 99.5 1.7E-14 5.9E-19 129.6 8.2 76 110-200 10-87 (96)
87 2dng_A Eukaryotic translation 99.5 3.1E-14 1E-18 122.7 9.4 81 108-198 14-94 (103)
88 1x4g_A Nucleolysin TIAR; struc 99.5 2.6E-14 9E-19 124.6 9.0 76 109-198 25-100 (109)
89 2kn4_A Immunoglobulin G-bindin 99.5 2.7E-14 9.1E-19 131.2 9.5 83 107-197 68-150 (158)
90 1x4d_A Matrin 3; structural ge 99.5 1.7E-14 6E-19 128.6 8.0 76 108-197 14-92 (102)
91 2wbr_A GW182, gawky, LD47780P; 99.5 2E-14 6.9E-19 127.4 8.3 74 109-196 7-80 (89)
92 2xnq_A Nuclear polyadenylated 99.5 4.3E-14 1.5E-18 122.2 10.2 74 108-197 21-95 (97)
93 1x4b_A Heterogeneous nuclear r 99.5 2.7E-14 9.3E-19 125.5 9.0 82 108-198 26-107 (116)
94 2e44_A Insulin-like growth fac 99.5 2.6E-14 8.8E-19 121.2 8.6 78 108-197 14-92 (96)
95 3r27_A HnRNP L, heterogeneous 99.5 3.6E-14 1.2E-18 127.2 9.8 77 108-198 20-98 (100)
96 2cq1_A PTB-like protein L; RRM 99.5 4.7E-14 1.6E-18 124.9 10.5 78 108-199 14-93 (101)
97 2dgt_A RNA-binding protein 30; 99.5 4.5E-14 1.5E-18 119.4 9.9 77 107-199 8-84 (92)
98 2jwn_A Embryonic polyadenylate 99.5 3.2E-14 1.1E-18 126.1 9.4 82 109-199 36-117 (124)
99 2dh8_A DAZ-associated protein 99.5 2E-14 6.7E-19 124.1 7.8 85 106-199 13-97 (105)
100 1whx_A Hypothetical protein ri 99.5 2.2E-14 7.4E-19 127.0 8.3 74 109-196 10-83 (111)
101 2ytc_A PRE-mRNA-splicing facto 99.5 3E-14 1E-18 118.1 8.6 74 108-195 11-85 (85)
102 1wex_A Hypothetical protein (r 99.5 3.2E-14 1.1E-18 126.4 9.3 78 108-199 14-93 (104)
103 1nu4_A U1A RNA binding domain; 99.5 1.9E-14 6.5E-19 122.0 7.3 83 108-198 7-90 (97)
104 2dnq_A RNA-binding protein 4B; 99.5 5.2E-14 1.8E-18 118.6 9.9 74 109-198 8-81 (90)
105 2hvz_A Splicing factor, argini 99.5 1.9E-14 6.4E-19 123.4 7.3 76 110-198 1-76 (101)
106 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.9E-14 6.6E-19 116.9 6.9 75 111-194 2-76 (77)
107 1wg5_A Heterogeneous nuclear r 99.5 4.6E-14 1.6E-18 122.9 9.6 86 108-203 14-100 (104)
108 1rk8_A CG8781-PA, CG8781-PA pr 99.5 3.9E-14 1.3E-18 132.6 9.8 87 103-197 66-152 (165)
109 2dgw_A Probable RNA-binding pr 99.5 5.9E-14 2E-18 118.2 9.7 79 108-197 9-87 (91)
110 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.5E-14 8.5E-19 123.5 7.4 80 108-197 18-98 (100)
111 1l3k_A Heterogeneous nuclear r 99.5 8.7E-14 3E-18 129.1 11.5 116 108-237 12-127 (196)
112 1x4c_A Splicing factor, argini 99.5 5.8E-14 2E-18 122.8 9.8 76 108-198 14-94 (108)
113 2e5j_A Methenyltetrahydrofolat 99.5 4E-14 1.4E-18 121.1 8.5 77 108-197 18-94 (97)
114 2ad9_A Polypyrimidine tract-bi 99.5 4.8E-14 1.6E-18 129.5 9.4 77 109-199 31-109 (119)
115 2dgu_A Heterogeneous nuclear r 99.5 5.3E-14 1.8E-18 121.5 8.9 75 108-198 10-84 (103)
116 2rs2_A Musashi-1, RNA-binding 99.5 6.9E-14 2.4E-18 123.2 9.6 80 109-197 25-104 (109)
117 2fc9_A NCL protein; structure 99.5 7.8E-14 2.7E-18 119.6 9.6 79 108-198 14-92 (101)
118 2cpy_A RNA-binding protein 12; 99.5 2.4E-14 8.1E-19 126.6 6.6 82 108-199 14-96 (114)
119 1e4u_A Transcriptional repress 99.5 9.7E-15 3.3E-19 125.1 3.8 68 3-75 8-75 (78)
120 2dnp_A RNA-binding protein 14; 99.5 6.1E-14 2.1E-18 118.2 8.6 74 108-197 8-81 (90)
121 2kvi_A Nuclear polyadenylated 99.5 5.6E-14 1.9E-18 120.3 8.4 76 108-199 9-85 (96)
122 2cqg_A TDP-43, TAR DNA-binding 99.5 1E-13 3.5E-18 119.2 10.1 80 108-197 14-93 (103)
123 2jvo_A Nucleolar protein 3; nu 99.5 7.5E-14 2.6E-18 123.3 9.4 74 108-197 30-103 (108)
124 3pgw_S U1-70K; protein-RNA com 99.5 1.5E-13 5E-18 148.9 13.5 90 102-199 95-184 (437)
125 2m2b_A RNA-binding protein 10; 99.5 3E-14 1E-18 128.7 6.6 83 108-199 22-110 (131)
126 2cpd_A Apobec-1 stimulating pr 99.5 1.3E-13 4.6E-18 118.0 10.1 76 108-199 14-91 (99)
127 2i2y_A Fusion protein consists 99.5 8.1E-14 2.8E-18 127.8 9.1 79 106-197 70-148 (150)
128 2jvr_A Nucleolar protein 3; RN 99.5 5.2E-14 1.8E-18 126.9 7.6 77 109-197 28-105 (111)
129 2lea_A Serine/arginine-rich sp 99.5 4.5E-14 1.5E-18 129.4 6.8 86 105-198 43-128 (135)
130 2cqh_A IGF-II mRNA-binding pro 99.5 4.6E-14 1.6E-18 119.3 6.3 76 108-198 7-84 (93)
131 1iqt_A AUF1, heterogeneous nuc 99.5 2.4E-14 8.2E-19 116.1 4.4 75 111-194 1-75 (75)
132 2db1_A Heterogeneous nuclear r 99.5 6.6E-14 2.2E-18 125.2 7.4 78 108-195 16-96 (118)
133 2cpx_A Hypothetical protein FL 99.5 1E-13 3.6E-18 121.0 8.5 79 108-198 24-106 (115)
134 3zzy_A Polypyrimidine tract-bi 99.5 2.2E-13 7.4E-18 127.3 11.0 76 111-198 30-107 (130)
135 1x4f_A Matrin 3; structural ge 99.5 7.9E-14 2.7E-18 126.8 7.6 78 108-199 24-104 (112)
136 2e5i_A Heterogeneous nuclear r 99.5 2.6E-13 8.9E-18 125.3 11.1 75 111-198 27-103 (124)
137 3md3_A Nuclear and cytoplasmic 99.5 2.2E-13 7.5E-18 122.2 10.1 80 108-195 86-165 (166)
138 3pgw_A U1-A; protein-RNA compl 99.5 4.6E-13 1.6E-17 132.5 13.4 85 106-198 6-91 (282)
139 2qfj_A FBP-interacting repress 99.5 2.5E-13 8.5E-18 127.8 10.8 81 109-197 125-205 (216)
140 1wg1_A KIAA1579 protein, homol 99.4 1.5E-13 5.2E-18 115.8 8.4 74 109-197 5-78 (88)
141 3nmr_A Cugbp ELAV-like family 99.4 4.2E-13 1.4E-17 121.7 11.8 107 109-237 3-118 (175)
142 1wez_A HnRNP H', FTP-3, hetero 99.4 1.6E-13 5.4E-18 120.3 8.6 81 106-197 12-92 (102)
143 2fc8_A NCL protein; structure 99.4 3E-13 1E-17 115.8 10.1 83 105-198 11-93 (102)
144 1fjc_A Nucleolin RBD2, protein 99.4 1E-13 3.5E-18 117.5 7.1 78 108-198 15-92 (96)
145 1wel_A RNA-binding protein 12; 99.4 1.3E-13 4.4E-18 123.3 7.7 80 108-197 24-104 (124)
146 1x5p_A Negative elongation fac 99.4 3.4E-13 1.2E-17 115.3 10.0 75 108-198 14-88 (97)
147 1qm9_A Polypyrimidine tract-bi 99.4 1.8E-13 6.3E-18 128.4 9.1 76 109-197 3-79 (198)
148 2f3j_A RNA and export factor b 99.4 1.9E-13 6.4E-18 131.1 9.3 85 108-201 87-171 (177)
149 2lmi_A GRSF-1, G-rich sequence 99.4 6.6E-14 2.2E-18 122.5 5.4 80 108-197 10-92 (107)
150 3q2s_C Cleavage and polyadenyl 99.4 9.9E-14 3.4E-18 137.9 7.4 84 108-199 67-152 (229)
151 1sjr_A Polypyrimidine tract-bi 99.4 2.5E-13 8.6E-18 131.5 9.9 76 110-197 47-124 (164)
152 2hgl_A HNRPF protein, heteroge 99.4 1.1E-13 3.7E-18 128.8 7.1 80 108-197 43-125 (136)
153 1wf1_A RNA-binding protein RAL 99.4 1.5E-13 5.1E-18 120.0 7.5 72 109-196 27-99 (110)
154 2adc_A Polypyrimidine tract-bi 99.4 3.9E-13 1.3E-17 130.9 11.3 79 106-197 31-110 (229)
155 2g4b_A Splicing factor U2AF 65 99.4 2.2E-13 7.6E-18 123.9 8.9 79 109-195 94-172 (172)
156 1fj7_A Nucleolin RBD1, protein 99.4 3.5E-14 1.2E-18 121.7 3.2 80 109-198 17-96 (101)
157 4f02_A Polyadenylate-binding p 99.4 2.6E-13 8.8E-18 130.8 9.5 79 109-197 103-181 (213)
158 2e5g_A U6 snRNA-specific termi 99.4 2.5E-13 8.6E-18 115.5 8.3 75 109-197 8-82 (94)
159 3tyt_A Heterogeneous nuclear r 99.4 3.4E-13 1.2E-17 131.4 10.0 77 108-197 3-80 (205)
160 2xs2_A Deleted in azoospermia- 99.4 1.1E-13 3.9E-18 118.7 5.9 80 108-198 8-87 (102)
161 2lcw_A RNA-binding protein FUS 99.1 1.4E-14 4.6E-19 127.7 0.0 83 108-198 6-96 (116)
162 3egn_A RNA-binding protein 40; 99.4 2.7E-13 9.1E-18 123.5 7.9 79 108-197 44-130 (143)
163 3sde_A Paraspeckle component 1 99.4 1E-12 3.6E-17 130.5 12.8 103 104-237 17-119 (261)
164 2cjk_A Nuclear polyadenylated 99.4 3E-13 1E-17 122.5 7.9 80 109-197 87-166 (167)
165 2dnn_A RNA-binding protein 12; 99.4 4.7E-13 1.6E-17 120.0 9.1 78 109-197 16-93 (109)
166 3nmr_A Cugbp ELAV-like family 99.4 7.9E-13 2.7E-17 119.9 10.6 79 107-194 93-174 (175)
167 1b7f_A Protein (SXL-lethal pro 99.4 9.2E-13 3.2E-17 119.1 10.5 80 107-194 87-168 (168)
168 2yh0_A Splicing factor U2AF 65 99.4 5E-13 1.7E-17 124.1 9.0 83 107-197 112-194 (198)
169 3beg_B Splicing factor, argini 99.4 5.8E-13 2E-17 118.4 8.4 71 108-193 15-85 (115)
170 2cjk_A Nuclear polyadenylated 99.4 6.2E-13 2.1E-17 120.4 8.4 103 109-237 3-110 (167)
171 1fxl_A Paraneoplastic encephal 99.4 1.4E-12 4.8E-17 117.1 10.3 80 107-194 86-167 (167)
172 2ghp_A U4/U6 snRNA-associated 99.4 1.4E-12 4.9E-17 129.6 11.0 103 106-237 38-140 (292)
173 3smz_A Protein raver-1, ribonu 99.4 2.4E-12 8.3E-17 127.4 12.1 113 109-237 95-208 (284)
174 2hzc_A Splicing factor U2AF 65 99.4 1E-12 3.5E-17 109.0 7.6 71 108-193 5-86 (87)
175 1l3k_A Heterogeneous nuclear r 99.4 1.6E-12 5.6E-17 120.5 9.5 81 109-198 104-184 (196)
176 2pe8_A Splicing factor 45; RRM 99.3 4.1E-12 1.4E-16 113.0 11.2 82 108-196 7-93 (105)
177 3d2w_A TAR DNA-binding protein 99.3 2.1E-12 7.3E-17 110.4 9.0 75 106-197 8-84 (89)
178 1fje_B Nucleolin RBD12, protei 99.3 2.3E-12 7.9E-17 118.1 9.7 77 108-197 98-174 (175)
179 2cq2_A Hypothetical protein LO 99.3 6.1E-13 2.1E-17 121.7 5.8 74 109-196 25-105 (114)
180 2dha_A FLJ20171 protein; RRM d 99.3 4.6E-13 1.6E-17 122.7 4.9 76 109-194 23-102 (123)
181 2g4b_A Splicing factor U2AF 65 99.3 3E-12 1E-16 116.4 10.1 99 108-237 3-117 (172)
182 2hgn_A Heterogeneous nuclear r 99.3 4.8E-13 1.6E-17 125.0 4.5 78 109-197 46-123 (139)
183 2bz2_A Negative elongation fac 99.3 2.4E-12 8.2E-17 116.4 8.8 75 108-198 38-112 (121)
184 2hgm_A HNRPF protein, heteroge 99.3 9.7E-13 3.3E-17 121.5 6.2 79 108-197 41-121 (126)
185 1fje_B Nucleolin RBD12, protei 99.3 6.8E-13 2.3E-17 121.6 4.9 104 108-237 12-122 (175)
186 3smz_A Protein raver-1, ribonu 99.3 3.5E-12 1.2E-16 126.3 10.1 83 107-198 182-265 (284)
187 2dnl_A Cytoplasmic polyadenyla 99.3 3.9E-12 1.3E-16 112.4 9.1 80 109-196 8-87 (114)
188 2voo_A Lupus LA protein; RNA-b 99.3 4.8E-12 1.6E-16 122.7 9.7 81 106-196 106-186 (193)
189 2ghp_A U4/U6 snRNA-associated 99.3 3.6E-12 1.2E-16 126.6 8.5 81 107-197 208-291 (292)
190 2yh0_A Splicing factor U2AF 65 99.3 6.4E-12 2.2E-16 116.7 9.6 112 108-237 3-137 (198)
191 3pgw_A U1-A; protein-RNA compl 99.3 6.4E-12 2.2E-16 124.3 10.0 75 108-195 206-281 (282)
192 1wf0_A TDP-43, TAR DNA-binding 99.3 1.9E-12 6.5E-17 108.6 5.0 75 108-199 4-80 (88)
193 1qm9_A Polypyrimidine tract-bi 99.3 5.4E-12 1.8E-16 118.4 7.7 77 108-197 119-197 (198)
194 3u1l_A PRE-mRNA-splicing facto 99.3 4.9E-12 1.7E-16 128.6 8.0 76 108-197 133-229 (240)
195 2dit_A HIV TAT specific factor 99.3 1.5E-11 5E-16 108.7 9.7 79 107-197 13-102 (112)
196 3s6e_A RNA-binding protein 39; 99.3 1.1E-11 3.9E-16 112.4 9.1 73 130-211 35-108 (114)
197 1jmt_A Splicing factor U2AF 35 99.2 1.6E-12 5.6E-17 115.0 2.9 76 113-194 19-103 (104)
198 2adc_A Polypyrimidine tract-bi 99.2 1.7E-11 5.8E-16 119.3 10.1 76 109-197 151-228 (229)
199 3v4m_A Splicing factor U2AF 65 99.2 1.4E-11 4.9E-16 109.3 8.7 63 131-196 34-96 (105)
200 2j8a_A Histone-lysine N-methyl 99.2 1.4E-11 4.6E-16 116.8 6.5 79 110-196 3-95 (136)
201 3ue2_A Poly(U)-binding-splicin 99.2 3.3E-11 1.1E-15 109.8 7.6 83 109-195 20-107 (118)
202 3tyt_A Heterogeneous nuclear r 99.1 5.8E-11 2E-15 115.7 7.5 69 109-187 123-193 (205)
203 3sde_A Paraspeckle component 1 99.1 1.4E-10 4.7E-15 115.3 9.6 81 108-197 95-179 (261)
204 3tht_A Alkylated DNA repair pr 99.0 8E-10 2.7E-14 117.6 8.4 75 108-196 17-98 (345)
205 2d9o_A DNAJ (HSP40) homolog, s 99.0 9.9E-10 3.4E-14 97.7 7.6 65 119-198 27-91 (100)
206 3dxb_A Thioredoxin N-terminall 98.8 6.8E-09 2.3E-13 100.6 8.1 64 131-195 148-211 (222)
207 2dnr_A Synaptojanin-1; RRM dom 98.7 3.7E-08 1.3E-12 87.9 8.1 54 131-198 34-87 (91)
208 1owx_A Lupus LA protein, SS-B, 98.6 1.6E-07 5.4E-12 87.2 10.2 80 100-193 9-92 (121)
209 1ufw_A Synaptojanin 2; RNP dom 98.4 5E-07 1.7E-11 81.3 6.4 72 110-195 16-93 (95)
210 2ct2_A Tripartite motif protei 98.2 1.4E-06 5E-11 72.9 4.8 60 4-66 13-72 (88)
211 2l9w_A U4/U6 snRNA-associated- 97.9 2.2E-05 7.6E-10 72.9 7.4 69 110-192 22-95 (117)
212 2ecm_A Ring finger and CHY zin 97.8 1.1E-05 3.7E-10 62.4 3.6 53 3-61 2-54 (55)
213 3ztg_A E3 ubiquitin-protein li 97.7 1.4E-05 4.9E-10 68.0 3.2 49 5-60 12-60 (92)
214 2ect_A Ring finger protein 126 97.7 1.9E-05 6.4E-10 65.4 3.8 56 4-66 13-68 (78)
215 3ng2_A RNF4, snurf, ring finge 97.7 1.1E-05 3.6E-10 65.3 2.0 58 3-66 7-67 (71)
216 1g25_A CDK-activating kinase a 97.7 1.9E-05 6.5E-10 63.5 3.2 57 5-66 2-59 (65)
217 2ysl_A Tripartite motif-contai 97.7 1.8E-05 6.2E-10 64.4 3.0 54 5-65 19-72 (73)
218 2xeu_A Ring finger protein 4; 97.7 1.2E-05 4.2E-10 63.4 1.8 56 5-66 2-60 (64)
219 2ecv_A Tripartite motif-contai 97.7 4.2E-05 1.4E-09 63.2 5.0 57 5-65 18-74 (85)
220 2ecw_A Tripartite motif-contai 97.7 3.4E-05 1.2E-09 63.7 4.3 57 5-65 18-74 (85)
221 2ea6_A Ring finger protein 4; 97.6 1.9E-05 6.6E-10 63.1 2.2 53 4-62 13-68 (69)
222 1iym_A EL5; ring-H2 finger, ub 97.6 4.1E-05 1.4E-09 59.2 3.5 51 4-60 3-53 (55)
223 1x4j_A Ring finger protein 38; 97.6 2E-05 6.7E-10 65.1 1.7 53 4-63 21-73 (75)
224 2kiz_A E3 ubiquitin-protein li 97.5 4.9E-05 1.7E-09 61.5 3.7 53 4-63 12-64 (69)
225 2ep4_A Ring finger protein 24; 97.5 5.9E-05 2E-09 61.8 3.4 52 4-62 13-64 (74)
226 2d8t_A Dactylidin, ring finger 97.5 3.3E-05 1.1E-09 63.2 1.9 52 4-65 13-64 (71)
227 2ecn_A Ring finger protein 141 97.5 3.2E-05 1.1E-09 62.7 1.5 54 4-68 13-66 (70)
228 2vje_A E3 ubiquitin-protein li 97.4 6.2E-05 2.1E-09 61.5 2.3 53 2-62 4-57 (64)
229 1v87_A Deltex protein 2; ring- 97.4 8.2E-05 2.8E-09 65.7 3.2 59 4-63 23-95 (114)
230 3l11_A E3 ubiquitin-protein li 97.3 8.2E-05 2.8E-09 66.0 2.8 49 5-62 14-62 (115)
231 2y43_A E3 ubiquitin-protein li 97.3 0.00014 4.6E-09 63.0 3.9 52 5-65 21-72 (99)
232 2ckl_B Ubiquitin ligase protei 97.3 9.5E-05 3.2E-09 69.6 2.8 49 6-62 54-102 (165)
233 2l0b_A E3 ubiquitin-protein li 97.3 8.2E-05 2.8E-09 64.1 2.1 52 4-62 38-89 (91)
234 2ecy_A TNF receptor-associated 97.2 0.00017 5.8E-09 58.1 3.3 52 5-65 14-65 (66)
235 1wey_A Calcipressin 1; structu 97.2 0.00036 1.2E-08 63.8 5.3 75 110-195 6-82 (104)
236 2djb_A Polycomb group ring fin 97.1 0.00024 8.1E-09 58.3 3.4 53 5-66 14-66 (72)
237 4ayc_A E3 ubiquitin-protein li 97.1 0.00013 4.5E-09 67.2 2.0 50 5-64 52-101 (138)
238 1chc_A Equine herpes virus-1 r 97.1 0.00024 8.2E-09 57.1 3.2 50 4-62 3-52 (68)
239 2ecl_A Ring-box protein 2; RNF 97.1 0.00025 8.6E-09 60.1 3.2 57 3-65 12-79 (81)
240 1jm7_A BRCA1, breast cancer ty 97.1 0.00078 2.7E-08 58.8 6.4 55 5-66 20-74 (112)
241 3fl2_A E3 ubiquitin-protein li 97.1 0.00033 1.1E-08 63.0 4.0 49 5-62 51-99 (124)
242 3lrq_A E3 ubiquitin-protein li 97.0 0.0003 1E-08 61.6 3.2 55 5-67 21-75 (100)
243 2egp_A Tripartite motif-contai 97.0 0.0002 7E-09 58.8 2.0 58 4-65 10-68 (79)
244 1wwh_A Nucleoporin 35, nucleop 97.0 0.0011 3.7E-08 61.9 6.9 67 106-188 21-87 (119)
245 1t1h_A Gspef-atpub14, armadill 97.0 0.00071 2.4E-08 55.9 4.9 52 5-65 7-58 (78)
246 2csy_A Zinc finger protein 183 97.0 0.00039 1.3E-08 58.1 3.3 46 6-61 15-60 (81)
247 1wim_A KIAA0161 protein; ring 96.9 0.00058 2E-08 58.9 3.9 60 5-66 4-70 (94)
248 2kr4_A Ubiquitin conjugation f 96.9 0.0011 3.8E-08 56.9 5.5 51 5-65 13-63 (85)
249 2yur_A Retinoblastoma-binding 96.9 0.00049 1.7E-08 56.9 3.1 50 5-62 14-64 (74)
250 4ap4_A E3 ubiquitin ligase RNF 96.9 0.00029 1E-08 62.4 1.8 58 4-67 5-65 (133)
251 2vje_B MDM4 protein; proto-onc 96.9 0.00035 1.2E-08 56.9 2.1 51 4-62 5-56 (63)
252 2ecg_A Baculoviral IAP repeat- 96.9 0.00035 1.2E-08 58.2 2.0 44 6-63 25-69 (75)
253 2d8s_A Cellular modulator of i 96.8 0.00061 2.1E-08 58.7 3.3 57 3-63 12-71 (80)
254 2ea5_A Cell growth regulator w 96.8 0.00083 2.8E-08 55.8 3.7 48 2-63 11-59 (68)
255 2kre_A Ubiquitin conjugation f 96.7 0.0012 4E-08 58.7 4.3 50 6-65 29-78 (100)
256 1z6u_A NP95-like ring finger p 96.7 0.00091 3.1E-08 63.1 3.7 50 5-63 77-126 (150)
257 2ckl_A Polycomb group ring fin 96.7 0.00094 3.2E-08 58.7 3.3 51 4-63 13-63 (108)
258 1rmd_A RAG1; V(D)J recombinati 96.7 0.0011 3.7E-08 58.9 3.6 53 5-66 22-74 (116)
259 1bor_A Transcription factor PM 96.6 0.00085 2.9E-08 53.1 2.6 47 3-62 3-49 (56)
260 4ap4_A E3 ubiquitin ligase RNF 96.6 0.00057 2E-08 60.5 1.7 58 3-66 69-129 (133)
261 3dpl_R Ring-box protein 1; ubi 96.6 0.0015 5.1E-08 59.0 4.1 53 3-61 34-100 (106)
262 3hct_A TNF receptor-associated 96.5 0.0016 5.3E-08 58.4 3.6 52 5-65 17-68 (118)
263 1jm7_B BARD1, BRCA1-associated 96.5 0.0014 4.7E-08 58.7 3.3 49 5-64 21-69 (117)
264 4ic3_A E3 ubiquitin-protein li 96.5 0.00072 2.5E-08 56.4 1.2 45 5-63 23-68 (74)
265 1wgm_A Ubiquitin conjugation f 96.4 0.0031 1.1E-07 55.8 5.1 51 5-65 21-72 (98)
266 2ysj_A Tripartite motif-contai 96.4 0.0023 7.9E-08 50.8 3.7 45 5-56 19-63 (63)
267 3hcs_A TNF receptor-associated 96.2 0.0027 9.2E-08 59.9 3.6 52 5-65 17-68 (170)
268 2yho_A E3 ubiquitin-protein li 96.1 0.0015 5.1E-08 55.6 1.3 51 5-69 17-68 (79)
269 1vyx_A ORF K3, K3RING; zinc-bi 96.1 0.0044 1.5E-07 50.7 3.9 52 1-61 1-58 (60)
270 2ecj_A Tripartite motif-contai 95.8 0.0068 2.3E-07 46.9 3.8 45 5-56 14-58 (58)
271 2c2l_A CHIP, carboxy terminus 95.7 0.0038 1.3E-07 61.6 2.6 52 5-65 207-258 (281)
272 2yu4_A E3 SUMO-protein ligase 95.7 0.016 5.3E-07 50.4 6.1 59 4-65 5-66 (94)
273 4a0k_B E3 ubiquitin-protein li 95.7 0.002 6.9E-08 59.4 0.3 53 3-61 45-111 (117)
274 1weo_A Cellulose synthase, cat 95.7 0.013 4.5E-07 52.6 5.4 53 5-62 15-70 (93)
275 3p3d_A Nucleoporin 53; structu 95.5 0.0068 2.3E-07 57.5 3.2 79 109-192 7-94 (132)
276 3knv_A TNF receptor-associated 95.5 0.0031 1E-07 59.0 0.7 47 5-60 30-76 (141)
277 2y1n_A E3 ubiquitin-protein li 95.4 0.0068 2.3E-07 66.0 3.3 52 6-66 332-383 (389)
278 2i2y_A Fusion protein consists 95.4 0.0081 2.8E-07 54.8 3.3 75 159-237 13-96 (150)
279 1uw4_A UPF3X; nonsense mediate 95.2 0.063 2.1E-06 47.8 8.1 68 111-184 3-70 (91)
280 2dhx_A Poly (ADP-ribose) polym 94.9 0.15 5E-06 46.8 9.8 68 109-193 8-80 (104)
281 3htk_C E3 SUMO-protein ligase 94.8 0.026 9.1E-07 58.9 5.3 52 6-65 181-235 (267)
282 2kn4_A Immunoglobulin G-bindin 94.4 0.063 2.1E-06 48.9 6.3 26 158-183 12-37 (158)
283 2f42_A STIP1 homology and U-bo 94.3 0.017 6E-07 56.8 2.4 52 5-65 105-156 (179)
284 1whv_A Poly(A)-specific ribonu 94.1 0.097 3.3E-06 47.7 6.6 56 109-180 15-70 (100)
285 3ctr_A Poly(A)-specific ribonu 93.7 0.062 2.1E-06 49.1 4.8 57 108-180 4-60 (101)
286 3pq1_A Poly(A) RNA polymerase; 90.8 0.12 4E-06 57.5 3.3 54 110-177 54-107 (464)
287 2bay_A PRE-mRNA splicing facto 90.0 0.13 4.4E-06 42.0 2.1 52 7-67 4-55 (61)
288 2l08_A Regulator of nonsense t 89.9 0.56 1.9E-05 42.4 6.3 68 111-184 11-78 (97)
289 2ct0_A Non-SMC element 1 homol 89.6 0.29 1E-05 41.9 4.1 52 4-63 13-65 (74)
290 3k1l_B Fancl; UBC, ring, RWD, 86.1 0.52 1.8E-05 51.3 4.3 60 4-63 306-374 (381)
291 3nw0_A Non-structural maintena 79.2 1.5 5.2E-05 44.5 4.3 52 5-64 179-231 (238)
292 3d2q_A Muscleblind-like protei 70.4 1.3 4.4E-05 37.0 1.0 26 194-220 40-65 (70)
293 2jne_A Hypothetical protein YF 67.0 0.5 1.7E-05 43.1 -2.3 41 7-62 33-73 (101)
294 3d45_A Poly(A)-specific ribonu 63.7 11 0.00037 42.1 6.9 58 107-180 437-494 (507)
295 2d9n_A Cleavage and polyadenyl 63.7 2.8 9.6E-05 35.5 1.8 25 197-221 39-63 (77)
296 2rhk_C Cleavage and polyadenyl 58.7 2.7 9.3E-05 35.5 0.8 24 197-220 45-68 (72)
297 3vk6_A E3 ubiquitin-protein li 58.6 5.9 0.0002 36.3 3.0 47 8-62 3-49 (101)
298 3d2n_A Muscleblind-like protei 58.6 4.3 0.00015 35.4 2.0 23 198-221 11-35 (83)
299 2jrp_A Putative cytoplasmic pr 57.6 1.4 4.6E-05 38.9 -1.3 41 7-62 3-43 (81)
300 3d2n_A Muscleblind-like protei 56.2 3.4 0.00012 36.1 1.0 26 194-220 41-66 (83)
301 3vth_A Hydrogenase maturation 54.9 1.8 6.1E-05 50.8 -1.3 31 159-191 224-254 (761)
302 2zet_C Melanophilin; complex, 53.9 2.6 8.7E-05 40.6 -0.2 49 5-58 67-116 (153)
303 3u1l_A PRE-mRNA-splicing facto 49.8 3.1 0.00011 42.4 -0.3 29 195-223 69-97 (240)
304 2e5s_A Otthump00000018578; ZF- 49.2 4.6 0.00016 36.1 0.7 25 195-220 55-79 (98)
305 2rpp_A Muscleblind-like protei 48.7 4.3 0.00015 35.9 0.5 24 196-220 51-74 (89)
306 2e5s_A Otthump00000018578; ZF- 45.5 3.8 0.00013 36.7 -0.4 24 198-222 22-47 (98)
307 2cs3_A Protein C14ORF4, MY039 45.5 24 0.00081 31.6 4.6 61 2-65 11-74 (93)
308 1zbd_B Rabphilin-3A; G protein 43.7 9.1 0.00031 36.0 1.8 37 4-40 53-90 (134)
309 3d2q_A Muscleblind-like protei 42.2 7.5 0.00025 32.4 0.9 23 198-221 8-32 (70)
310 1m9o_A Tristetraproline; Cys3H 41.4 17 0.00058 30.0 2.9 27 195-221 11-38 (77)
311 2rpp_A Muscleblind-like protei 38.9 8.4 0.00029 34.1 0.7 24 198-222 19-44 (89)
312 2gmg_A Hypothetical protein PF 38.4 9.5 0.00033 35.1 1.0 28 25-63 69-97 (105)
313 2d9n_A Cleavage and polyadenyl 31.4 19 0.00066 30.4 1.7 27 195-222 9-36 (77)
314 2rhk_C Cleavage and polyadenyl 29.9 18 0.00061 30.5 1.3 26 195-221 15-41 (72)
315 2lea_A Serine/arginine-rich sp 29.8 18 0.00062 32.6 1.4 62 159-237 4-70 (135)
316 2csz_A Synaptotagmin-like prot 28.5 23 0.00077 31.0 1.7 34 4-37 23-57 (76)
317 2jr7_A DPH3 homolog; DESR1, CS 26.3 11 0.00036 33.8 -0.8 33 21-58 21-53 (89)
318 1wge_A Hypothetical protein 26 25.1 13 0.00046 32.7 -0.3 33 21-58 28-60 (83)
319 2j9u_B VPS36, vacuolar protein 24.7 32 0.0011 30.1 1.9 25 7-31 18-49 (76)
320 2yko_A LINE-1 ORF1P; RNA-bindi 24.3 2.5E+02 0.0087 28.9 8.7 135 108-244 51-214 (233)
321 2hf1_A Tetraacyldisaccharide-1 24.1 14 0.00049 31.2 -0.3 30 7-62 9-38 (68)
322 1twf_L ABC10-alpha, DNA-direct 22.8 32 0.0011 29.3 1.6 9 50-58 45-53 (70)
323 1m9o_A Tristetraproline; Cys3H 22.3 19 0.00063 29.7 0.0 26 196-221 50-76 (77)
324 2jr6_A UPF0434 protein NMA0874 22.3 19 0.00065 30.5 0.1 31 6-62 8-38 (68)
325 4f25_A Polyadenylate-binding p 21.7 24 0.00081 30.7 0.6 24 101-124 89-112 (115)
326 1z2q_A LM5-1; membrane protein 21.4 52 0.0018 28.1 2.6 40 1-40 16-55 (84)
327 2js4_A UPF0434 protein BB2007; 21.3 15 0.00052 31.2 -0.7 31 6-62 8-38 (70)
328 1v33_A DNA primase small subun 20.6 33 0.0011 37.2 1.5 29 14-42 114-143 (366)
329 2jny_A Uncharacterized BCR; st 20.3 22 0.00074 30.1 -0.0 30 6-61 10-39 (67)
330 2yw8_A RUN and FYVE domain-con 20.2 49 0.0017 28.2 2.2 40 1-40 14-53 (82)
No 1
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=6.3e-21 Score=167.99 Aligned_cols=103 Identities=45% Similarity=0.769 Sum_probs=90.1
Q ss_pred ccCCCCccccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHH
Q 003956 98 RMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQ 177 (784)
Q Consensus 98 RK~La~VRVIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~ 177 (784)
-.+++++|+++++.|||+|||+.+++++|++..++|++||+|.+|.|.+++.+.. ...++++|||+|.+.++|.+||+
T Consensus 4 ~s~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~--~~~~~G~afV~f~~~~~A~~Ai~ 81 (111)
T 2cpi_A 4 GSSGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAG--SQGPSASAYVTYIRSEDALRAIQ 81 (111)
T ss_dssp CSSCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCS--SSCCCEEEEEEESSHHHHHHHHH
T ss_pred CCCCccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCc--cCCCCeEEEEEECcHHHHHHHHH
Confidence 4588999999999999999999999999872236999999999999987765321 11356899999999999999999
Q ss_pred HhCCCccCCceEEEeecCCcccccc
Q 003956 178 SVHSYILDGRPLRACFGTTKYCHAW 202 (784)
Q Consensus 178 aLDG~~LdGRvLRASfGTTKYCs~F 202 (784)
.|||..|+||+|+|.|+++|+|+.|
T Consensus 82 ~lng~~~~gr~l~V~~a~~k~~~~~ 106 (111)
T 2cpi_A 82 CVNNVVVDGRTLKASLGTTKYCSYS 106 (111)
T ss_dssp HHTTEEETTEEEEEESCCCCSCSST
T ss_pred HhCCCEECCEEEEEEeccccccccc
Confidence 9999999999999999999999765
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=138.67 Aligned_cols=80 Identities=19% Similarity=0.373 Sum_probs=71.9
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
|...|||+|||+.+++++|. ++|++||+|..|.|.+++..+ .++++|||+|.+.++|.+||+.|||..++||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr 89 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELR---SLFSSIGEVESAKLIRDKVAG-----HSLGYGFVNYVTAKDAERAINTLNGLRLQSK 89 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECSSSC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEeEeeecCCCC-----cccccEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 55679999999999998876 699999999999999876533 2478999999999999999999999999999
Q ss_pred eEEEeecC
Q 003956 188 PLRACFGT 195 (784)
Q Consensus 188 vLRASfGT 195 (784)
+|+|.|+.
T Consensus 90 ~l~V~~Ak 97 (99)
T 4fxv_A 90 TIKVSYAR 97 (99)
T ss_dssp ECEEEECC
T ss_pred EEEEEEee
Confidence 99999974
No 3
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=9e-16 Score=127.40 Aligned_cols=81 Identities=17% Similarity=0.328 Sum_probs=71.3
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+.|||..++|+.
T Consensus 6 ~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIA---AAFAPFGRISDARVVKDMATG-----KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp CEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ceEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4689999999999998876 699999999999998875432 24789999999999999999999999999999
Q ss_pred EEEeecCCc
Q 003956 189 LRACFGTTK 197 (784)
Q Consensus 189 LRASfGTTK 197 (784)
|+|.|+..|
T Consensus 78 l~v~~a~~k 86 (87)
T 3bs9_A 78 IRTNWATRK 86 (87)
T ss_dssp CEEEEEC--
T ss_pred EEEEecCCC
Confidence 999998765
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-16 Score=136.16 Aligned_cols=82 Identities=18% Similarity=0.324 Sum_probs=71.8
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCC-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC-CCccCC
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH-SYILDG 186 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYG-KI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLD-G~~LdG 186 (784)
.|.|||+|||+.+++++|. ++|++|| +|..|.|.+++.++ .++|+|||+|.+.++|.+||+.++ |..++|
T Consensus 1 S~~i~v~nLp~~~te~~l~---~~F~~~G~~v~~v~i~~d~~t~-----~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIR---GQLQSHGVQAREVRLMRNKSSG-----QSRGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHHH---HHHHHHTCCCSBCCSSSCSSSC-----CCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHhCCEeEEEEEEecCCCC-----CcCceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence 3789999999999999986 6999999 89999998876543 257899999999999999999885 567999
Q ss_pred ceEEEeecCCcc
Q 003956 187 RPLRACFGTTKY 198 (784)
Q Consensus 187 RvLRASfGTTKY 198 (784)
|+|+|.|+..|-
T Consensus 73 r~i~V~~a~~~~ 84 (91)
T 2lxi_A 73 QKVSMHYSDPKP 84 (91)
T ss_dssp EEEEEECCCSCC
T ss_pred EEEEEEEcCCCC
Confidence 999999998763
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=136.03 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=72.3
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
..+.|||+|||+.+++++|. ++|++||+|.+|.|.+++.+. .++++|||+|.+.++|.+||+.|||..++||
T Consensus 5 p~~~lfV~nL~~~~te~~L~---~~F~~~G~i~~v~i~~d~~tg-----~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr 76 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLK---DMCRKYGEVEEVEILLHPRTR-----KHLGLARVLFTSTRGAKETVKNLHLTSVMGN 76 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCCCCCHHHHH---HHHHhcCCeeEEEEEECCCCC-----ceeeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 35689999999999988876 799999999999999887643 2578999999999999999999999999999
Q ss_pred eEEEeecCC
Q 003956 188 PLRACFGTT 196 (784)
Q Consensus 188 vLRASfGTT 196 (784)
.|+|.++..
T Consensus 77 ~i~V~~a~~ 85 (110)
T 3s8s_A 77 IIHAQLDIK 85 (110)
T ss_dssp ECEEEECST
T ss_pred EEEEEECCC
Confidence 999999754
No 6
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=1.3e-15 Score=125.36 Aligned_cols=79 Identities=22% Similarity=0.392 Sum_probs=71.2
Q ss_pred eEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 003956 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (784)
Q Consensus 111 LVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvLR 190 (784)
.|||+|||+.+++++|. ++|++||+|..|.|.+++..+ .++++|||+|.+.++|.+||+.|||..++||.|+
T Consensus 3 ~l~V~nlp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~-----~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 74 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLR---NAFKDFPSYLSGHVMWDMQTG-----SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 74 (83)
T ss_dssp EEEEECCCTTCCHHHHH---HHHTTSTTEEEEEEEECTTTC-----CEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred EEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEEcCCCC-----CccceEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 69999999999998886 699999999999998875432 2478999999999999999999999999999999
Q ss_pred EeecCCc
Q 003956 191 ACFGTTK 197 (784)
Q Consensus 191 ASfGTTK 197 (784)
|.|+..|
T Consensus 75 v~~a~~~ 81 (83)
T 3md1_A 75 INWAAKL 81 (83)
T ss_dssp EEECCCC
T ss_pred EEecCcC
Confidence 9998765
No 7
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.62 E-value=1.1e-15 Score=135.59 Aligned_cols=81 Identities=15% Similarity=0.334 Sum_probs=71.8
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.+ .+++|||+|.+.++|.+||+.|||..++||.
T Consensus 5 ~~~lfV~nLp~~~te~~L~---~~F~~~G~v~~v~i~~d~~~-------~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALY---DTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETTE-------EEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEECCCCCCCCHHHHH---HHHhccCCEEEEEEeecCCC-------CCceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3569999999999988876 79999999999999887532 3678999999999999999999999999999
Q ss_pred EEEeecCCccc
Q 003956 189 LRACFGTTKYC 199 (784)
Q Consensus 189 LRASfGTTKYC 199 (784)
|+|.++..+..
T Consensus 75 i~V~~a~~~~~ 85 (115)
T 4f25_A 75 VFVGRFKSRKE 85 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCccc
Confidence 99999876543
No 8
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=1.3e-15 Score=125.93 Aligned_cols=79 Identities=19% Similarity=0.384 Sum_probs=70.6
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++... ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLH---AAFIPFGDITDIQIPLDYETE-----KHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHH---HHHGGGSCEEEEECCEETTTT-----EECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHhccCCEEEEEEEECCCCC-----ccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46789999999999998876 699999999999998775432 2477899999999999999999999999999
Q ss_pred eEEEeec
Q 003956 188 PLRACFG 194 (784)
Q Consensus 188 vLRASfG 194 (784)
.|+|.|+
T Consensus 78 ~l~v~~a 84 (85)
T 3mdf_A 78 TIRVNLA 84 (85)
T ss_dssp ECEEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 9
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.1e-15 Score=128.02 Aligned_cols=84 Identities=17% Similarity=0.375 Sum_probs=74.8
Q ss_pred cccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 105 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 105 RVIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
.-...+.|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .+++|||+|.+.++|.+||+.|||..+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g~------~~g~afV~f~~~~~a~~A~~~l~g~~~ 83 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELE---EICKAHGTVKDLRLVTNRAGK------PKGLAYVEYENESQASQAVMKMDGMTI 83 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTSC------EEEEEEEEESSHHHHHHHHHHHTTEES
T ss_pred cCCCCCEEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEEECCCCC------EEeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34557889999999999999976 699999999999999877432 478999999999999999999999999
Q ss_pred CCceEEEeecCCc
Q 003956 185 DGRPLRACFGTTK 197 (784)
Q Consensus 185 dGRvLRASfGTTK 197 (784)
+|+.|+|.|+..+
T Consensus 84 ~g~~l~v~~a~~~ 96 (100)
T 2do4_A 84 KENIIKVAISNSG 96 (100)
T ss_dssp SSCEEEEEECCCC
T ss_pred CCEEEEEEECCCC
Confidence 9999999998765
No 10
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=126.90 Aligned_cols=83 Identities=22% Similarity=0.411 Sum_probs=74.1
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++.+. ..+++|||+|.+.++|.+||+.|||..++|+.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLR---GIFEPFGKIDNIVLMKDSDTG-----RSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEECCSSSC-----CCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEeecCCCC-----ceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 4689999999999999876 699999999999999876532 25778999999999999999999999999999
Q ss_pred EEEeecCCccc
Q 003956 189 LRACFGTTKYC 199 (784)
Q Consensus 189 LRASfGTTKYC 199 (784)
|+|.|+..+..
T Consensus 77 l~V~~a~~~~~ 87 (95)
T 2dnz_A 77 MRVGHVTERLD 87 (95)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEcccccC
Confidence 99999987754
No 11
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=130.85 Aligned_cols=85 Identities=14% Similarity=0.348 Sum_probs=74.9
Q ss_pred cccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 105 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 105 RVIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
+.+....|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||+.|||..+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~ 90 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIH---DKFAEYGEIKNIHLNLDRRTG-----YLKGYTLVEYETYKEAQAAMEGLNGQDL 90 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTS-----SEEEEEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHhccCCeEEEEEEecCCCC-----ceeeEEEEEECCHHHHHHHHHHhcCCEE
Confidence 34456789999999999999876 699999999999998876532 2478999999999999999999999999
Q ss_pred CCceEEEeecCCc
Q 003956 185 DGRPLRACFGTTK 197 (784)
Q Consensus 185 dGRvLRASfGTTK 197 (784)
+|+.|+|.|+..|
T Consensus 91 ~g~~l~V~~a~~~ 103 (106)
T 1p27_B 91 MGQPISVDWCFVR 103 (106)
T ss_dssp SSSBCEEEESEES
T ss_pred CCcEEEEEeecCC
Confidence 9999999998765
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=128.76 Aligned_cols=84 Identities=18% Similarity=0.311 Sum_probs=74.3
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
..+.|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLE---KLFSAYGPLSELHYPIDSLTK-----KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCCCTTTC-----CCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEEecCCCC-----CcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 45789999999999999876 699999999999998876432 2577899999999999999999999999999
Q ss_pred eEEEeecCCccc
Q 003956 188 PLRACFGTTKYC 199 (784)
Q Consensus 188 vLRASfGTTKYC 199 (784)
.|+|.|+..+.-
T Consensus 79 ~l~V~~a~~~~~ 90 (99)
T 1whw_A 79 MLHVLPSTIKKE 90 (99)
T ss_dssp EEEEEECCCCST
T ss_pred EEEEEEcCCCcc
Confidence 999999887643
No 13
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=127.15 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=72.3
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. ..+++|||+|.+.++|.+||+.|||..++||
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLR---EVFSKYGPIADVSIVYDQQSR-----RSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHH---HHHHTTSCEEEEEEEECSSSS-----SEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHhcCCeeEEEEEEcCCCC-----CcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45789999999999999876 699999999999998876532 2478899999999999999999999999999
Q ss_pred eEEEeecCC
Q 003956 188 PLRACFGTT 196 (784)
Q Consensus 188 vLRASfGTT 196 (784)
.|+|.|+.+
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999764
No 14
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=126.07 Aligned_cols=82 Identities=28% Similarity=0.547 Sum_probs=72.6
Q ss_pred cccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 105 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 105 RVIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
.......|||+|||+.+++++|. ++|++||+|..|.|.+++.+. ..+++|||+|.+.++|.+||+.|||..+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~ 83 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLY---RIFSKYGKVVKVTIMKDKDTR-----KSKGVAFILFLDKDSAQNCTRAINNKQL 83 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHH---HHTTTTSCEEEEEECCCSSSC-----CCTTCEEEEESCHHHHHHHHHHTTTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCC-----CcccEEEEEECCHHHHHHHHHHcCCCee
Confidence 33456889999999999999976 699999999999998876533 2477899999999999999999999999
Q ss_pred CCceEEEeec
Q 003956 185 DGRPLRACFG 194 (784)
Q Consensus 185 dGRvLRASfG 194 (784)
+||.|+|.|+
T Consensus 84 ~g~~l~v~~a 93 (94)
T 2e5h_A 84 FGRVIKASIA 93 (94)
T ss_dssp TTEEEEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999987
No 15
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=2.3e-15 Score=128.33 Aligned_cols=82 Identities=15% Similarity=0.385 Sum_probs=73.1
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||..+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||+.|||..++||.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 73 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQIL---DLCSNVGPVINLKMMFDPQTG-----RSKGYAFIEFRDLESSASAVRNLNGYQLGSRF 73 (96)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCBCTTTC-----CBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEEeCCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4679999999999998876 699999999999998876532 24778999999999999999999999999999
Q ss_pred EEEeecCCcc
Q 003956 189 LRACFGTTKY 198 (784)
Q Consensus 189 LRASfGTTKY 198 (784)
|+|.|+..+-
T Consensus 74 l~V~~a~~~~ 83 (96)
T 2x1f_A 74 LKCGYSSNSD 83 (96)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 16
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=125.68 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=72.4
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
+...|||+|||+.+++++|. ++|++||+|..|.|.++..... ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIM---EIFSTYGKIKMIDMPVERMHPH----LSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 75 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCEETTEEE----EECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEeCCCCCC----CCCcEEEEEEecHHHHHHHHHHcCCCeECCe
Confidence 45789999999999999886 6999999999999987764321 1367899999999999999999999999999
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|+|.++...
T Consensus 76 ~l~v~~a~~~ 85 (88)
T 4a8x_A 76 EITATAVLAP 85 (88)
T ss_dssp ECEEEEECCC
T ss_pred EEEEEECCCC
Confidence 9999998653
No 17
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.60 E-value=6.6e-16 Score=133.95 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=71.8
Q ss_pred cCeEEEeCCCC------CCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 003956 109 RNLVYIIGLPI------NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 182 (784)
Q Consensus 109 RNLVYV~GLP~------~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~ 182 (784)
.++|||+|||. .+++++|. ++|++||+|.+|.|.+++.++ .++|+|||+|.+.++|.+||+.|||.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~---~~F~~~G~i~~v~i~~d~~tg-----~~kG~afV~f~~~~~A~~Ai~~lng~ 77 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALT---SLFSKAGKVVNMEFPIDEATG-----KTKGFLFVECGSMNDAKKIIKSFHGK 77 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHH---HHHHTTSCEEEEECCEETTTT-----EECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHH---HHHHhcCCEeEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHHhCCc
Confidence 57899999999 88877775 799999999999999887633 24788999999999999999999999
Q ss_pred ccCC-ceEEEeecCCc
Q 003956 183 ILDG-RPLRACFGTTK 197 (784)
Q Consensus 183 ~LdG-RvLRASfGTTK 197 (784)
.++| |.|+|.++..+
T Consensus 78 ~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 78 RLDLKHRLFLYTMKDV 93 (100)
T ss_dssp BSSSSCBCEEEESHHH
T ss_pred ccCCCeEEEEEECchh
Confidence 9999 99999998653
No 18
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.8e-15 Score=126.67 Aligned_cols=83 Identities=20% Similarity=0.366 Sum_probs=73.3
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
..+.|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+ +||..++|+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELR---EYFKKFGVVTEVVMIYDAEKQ-----RPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHH---HHHSSSSCEEEEEECCCTTTC-----SCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCC-----CCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 45789999999999999876 699999999999998876532 247889999999999999999 999999999
Q ss_pred eEEEeecCCccc
Q 003956 188 PLRACFGTTKYC 199 (784)
Q Consensus 188 vLRASfGTTKYC 199 (784)
.|+|.|+..+.-
T Consensus 80 ~l~V~~a~~~~~ 91 (99)
T 2dgs_A 80 KVEVKRAEPRDS 91 (99)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987643
No 19
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3e-15 Score=128.77 Aligned_cols=83 Identities=19% Similarity=0.378 Sum_probs=73.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQ---ELFRPFGSISRIYLAKDKTTG-----QSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHH---TTSTTTCCEEEEEEEECSSSC-----SEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEeecCCCC-----ceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 45789999999999998876 799999999999998876432 2478999999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+-
T Consensus 86 ~l~v~~a~~~~ 96 (103)
T 2cq0_A 86 ILNVEWAKPST 96 (103)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999987764
No 20
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=129.40 Aligned_cols=84 Identities=18% Similarity=0.345 Sum_probs=74.6
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++... ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLH---AAFIPFGDITDIQIPLDYETE-----KHRGFAFVEFELAEDAAAAIDNMNESELFGR 82 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHH---HHHTTTSCCCCEECCCCSSSC-----CCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHhhccCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46789999999999998876 699999999999998775432 2578899999999999999999999999999
Q ss_pred eEEEeecCCccc
Q 003956 188 PLRACFGTTKYC 199 (784)
Q Consensus 188 vLRASfGTTKYC 199 (784)
.|+|.|+..+.-
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 2cqb_A 83 TIRVNLAKPMRI 94 (102)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999987654
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=128.46 Aligned_cols=86 Identities=22% Similarity=0.320 Sum_probs=75.5
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLW---ELFLQAGPVVNTHMPKDRVTG-----QHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCBCSSSC-----SBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----cCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 45789999999999998876 799999999999998876432 2477899999999999999999999999999
Q ss_pred eEEEeecCCccccc
Q 003956 188 PLRACFGTTKYCHA 201 (784)
Q Consensus 188 vLRASfGTTKYCs~ 201 (784)
.|+|.|+..+....
T Consensus 86 ~l~v~~a~~~~~~~ 99 (105)
T 1x5u_A 86 PIRVNKASAHNKNL 99 (105)
T ss_dssp BCEEEETTTTSCCC
T ss_pred EEEEEECCCCCcCC
Confidence 99999998876543
No 22
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=133.22 Aligned_cols=80 Identities=14% Similarity=0.293 Sum_probs=70.2
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCc--eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC----
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGK--VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY---- 182 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGK--I~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~---- 182 (784)
-|+|||+|||+.+++|+|. ++|++||+ |.+|.|.+++.++ .++|+|||+|.+.++|.+||+.|||.
T Consensus 9 m~tlfV~nL~~~~tee~L~---~~F~~~G~i~v~~v~i~~d~~tg-----~srG~aFV~f~~~~~A~~Ai~~lng~~~~~ 80 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIM---TALSPYASLAVNNIRLIKDKQTQ-----QNRGFAFVQLSSAMDASQLLQILQSLHPPL 80 (95)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHSTTTCCCCGGGEECCCCSSSS-----SCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred cCEEEEeCCCCcCCHHHHH---HHHHhhCCccEEEEEEEecCCCC-----CCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence 4889999999999999987 69999996 6689998887543 25889999999999999999999997
Q ss_pred ccCCceEEEeecCC
Q 003956 183 ILDGRPLRACFGTT 196 (784)
Q Consensus 183 ~LdGRvLRASfGTT 196 (784)
.++||+|+|.|+..
T Consensus 81 ~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 81 KIDGKTIGVDFAKS 94 (95)
T ss_dssp EETTEEEEEEECCC
T ss_pred eECCEEEEEEEccC
Confidence 48999999999853
No 23
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.59 E-value=8.8e-16 Score=130.03 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=67.5
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCC--ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYG--KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYG--KI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
|-.|||+|||+.+++++|. ++|++|| +|..|.|.+++..+ ..+|+|||+|.+.++|.+||+.|||..++|
T Consensus 1 r~~l~V~nL~~~~t~~~l~---~~F~~~G~~~v~~v~i~~~~~~g-----~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 1 RIALYIGNLTWWTTDEDLT---EAVHSLGVNDILEIKFFENRANG-----QSKGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp ---CEEESCCTTCCHHHHH---HHHHTTTCCCCCCEEEEECTTTC-----CEEEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred CeEEEEeCCCCCCCHHHHH---HHHHHhCCCceEEEEEEecCCCC-----ccCcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 3468999999999998876 7999999 99999998876433 247899999999999999999999999999
Q ss_pred ceEEEeecCCc
Q 003956 187 RPLRACFGTTK 197 (784)
Q Consensus 187 RvLRASfGTTK 197 (784)
|.|+|.++..+
T Consensus 73 r~i~V~~~~~~ 83 (90)
T 3p5t_L 73 QNPVVTPSNKL 83 (90)
T ss_dssp CCCEECCC---
T ss_pred EEEEEEECCCC
Confidence 99999988654
No 24
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=126.23 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=72.0
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. ++++|||+|.+.++|.+||+.|||..++||
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~---~~F~~~G~i~~v~i~~~~~g~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILY---ELFLQAGPLTKVTICKDREGK------PKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTSC------EEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCCC------CceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 45789999999999998876 699999999999999876532 478999999999999999999999999999
Q ss_pred eEEEeecCC
Q 003956 188 PLRACFGTT 196 (784)
Q Consensus 188 vLRASfGTT 196 (784)
.|+|.|+..
T Consensus 86 ~l~V~~a~~ 94 (95)
T 2ywk_A 86 PINVSGPSS 94 (95)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEcCC
Confidence 999999764
No 25
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=127.71 Aligned_cols=80 Identities=19% Similarity=0.353 Sum_probs=71.1
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEE--------EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK--------VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV 179 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~K--------IvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aL 179 (784)
....|||+|||+.+++++|. ++|++||.|.. |.|.+++.++ ..+++|||+|.+.++|.+||+.|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVA---DYFKQIGIIKTNKKTGQPMINLYTDRETG-----KLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHH---HHHTTTSCBCEETTTTEESEEEEECTTTC-----SEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCEeeccccccccEEEEecCCCC-----CeeeEEEEEECCHHHHHHHHHHh
Confidence 45789999999999998876 69999999999 9998876532 24789999999999999999999
Q ss_pred CCCccCCceEEEeecC
Q 003956 180 HSYILDGRPLRACFGT 195 (784)
Q Consensus 180 DG~~LdGRvLRASfGT 195 (784)
||..++||.|+|.|++
T Consensus 84 ~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 84 DGKEFSGNPIKVSFAT 99 (99)
T ss_dssp TTCBSSSSBCEEEECC
T ss_pred CCCEeCCcEEEEEecC
Confidence 9999999999999874
No 26
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=3.7e-15 Score=130.50 Aligned_cols=83 Identities=19% Similarity=0.342 Sum_probs=73.7
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIK---AAFAPFGRISDARVVKDMATG-----KSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45689999999999999876 699999999999999876432 2478999999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+-
T Consensus 86 ~l~V~~a~~~~ 96 (115)
T 2dgo_A 86 QIRTNWATRKP 96 (115)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEEccCCC
Confidence 99999987764
No 27
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=5.4e-15 Score=127.27 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=73.4
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC-
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG- 186 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG- 186 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .+++|||+|.+.++|.+||+.|||..+.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVL---RLFQPFGVIDECTVLRGPDGS------SKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECSSSC------EEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCCC------cCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 36789999999999998876 699999999999999876432 47799999999999999999999999998
Q ss_pred --ceEEEeecCCcc
Q 003956 187 --RPLRACFGTTKY 198 (784)
Q Consensus 187 --RvLRASfGTTKY 198 (784)
+.|+|.|+..+.
T Consensus 85 ~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 85 ASSSLVVKFADTDK 98 (105)
T ss_dssp CSSCCEEEESCSSC
T ss_pred CCccEEEEECccCc
Confidence 999999998764
No 28
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=127.39 Aligned_cols=81 Identities=19% Similarity=0.366 Sum_probs=73.0
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
+...|||+|||+.+++++|. ++|++||+|..|.|.++ .+. .+++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~-~g~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLR---KAFSPFGTITSAKVMME-GGR------SKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHH---HTTTTTSCEEEEEEEEC-SSS------EEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEcC-CCC------cCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 56789999999999999876 69999999999999887 332 477899999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+-
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2d9p_A 84 PLYVALAQRKE 94 (103)
T ss_dssp BCEEEECSSCC
T ss_pred EEEEEEecccc
Confidence 99999988764
No 29
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.5e-15 Score=127.66 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=72.5
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+ .+++|||+|.+.++|.+||+.|||..++||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLIL---QLFSQIGPCKSCKMITEHTS-------NDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHHHHSCEEEEEEECCCCS-------SCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCccCCHHHHH---HHHHhcCCEeEEEEEecCCC-------CCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 45789999999999998876 69999999999999987542 367899999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+.
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2cqi_A 84 EVKVNWATTPS 94 (103)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 99999987753
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.3e-15 Score=126.77 Aligned_cols=82 Identities=26% Similarity=0.484 Sum_probs=73.5
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.++..+ .+++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLR---QMFGQFGKILDVEIIFNERG-------SKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHGGGTSCEEEEEEECCTTT-------TCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCC-------CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45789999999999999876 79999999999999877542 367899999999999999999999999999
Q ss_pred eEEEeecCCccc
Q 003956 188 PLRACFGTTKYC 199 (784)
Q Consensus 188 vLRASfGTTKYC 199 (784)
.|+|.|+..+.-
T Consensus 84 ~l~v~~a~~~~~ 95 (103)
T 2cq3_A 84 KIEVNNATARVM 95 (103)
T ss_dssp ECEEEECCSSCC
T ss_pred EEEEEEcccCCC
Confidence 999999987754
No 31
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.1e-15 Score=128.18 Aligned_cols=83 Identities=18% Similarity=0.383 Sum_probs=73.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++... ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLE---QVFSKYGQISEVVVVKDRETQ-----RSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHHHHHSCCCEEEECCCSSSC-----SCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCC-----CcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 45789999999999999876 699999999999998876432 2477899999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+.
T Consensus 83 ~l~v~~a~~~~ 93 (102)
T 1x5s_A 83 QIRVDQAGKSS 93 (102)
T ss_dssp CCEEEEEECCC
T ss_pred EEEEEECCCCC
Confidence 99999987654
No 32
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.1e-15 Score=127.50 Aligned_cols=82 Identities=16% Similarity=0.369 Sum_probs=72.7
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeec-CCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh-CCCccC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRT-ATGDIQHSANNSCCVYITYSREDDAIRCIQSV-HSYILD 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrd-k~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aL-DG~~Ld 185 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.++ +... ..+++|||+|.+.++|.+||+.| ||..++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIR---ELFSTFGELKTVRLPKKMTGTG-----AHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCCCCSSSC-----SSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCEEEEeCCCCcCCHHHHH---HHHHccCCeEEEEEecCCCCCC-----CcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 46789999999999998876 69999999999999877 3322 24778999999999999999999 999999
Q ss_pred CceEEEeecCCc
Q 003956 186 GRPLRACFGTTK 197 (784)
Q Consensus 186 GRvLRASfGTTK 197 (784)
|+.|+|.|+..+
T Consensus 86 g~~l~v~~a~~~ 97 (107)
T 2cph_A 86 GRRLVLEWADSE 97 (107)
T ss_dssp SCBCEEEECCCC
T ss_pred CCEEEEEeCCCC
Confidence 999999998775
No 33
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=126.93 Aligned_cols=82 Identities=20% Similarity=0.364 Sum_probs=72.7
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEE-EEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKV-SISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KI-vInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
...|||+|||+.+++++|. ++|++||+|..| .|.+++... ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLY---DTFSAFGVILQTPKIMRDPDTG-----NSKGYAFINFASFDASDAAIEAMNGQYLCNR 76 (96)
T ss_dssp CCEEEEECCCTTCCHHHHH---HHHHTTSCBSSCCEECCCTTTC-----SCCSEEEEEBSSHHHHHHHHHTTTTCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEEEcCCCC-----CcCeEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4689999999999998876 699999999999 888775432 2477899999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+-
T Consensus 77 ~l~v~~a~~~~ 87 (96)
T 1x5t_A 77 PITVSYAFKKD 87 (96)
T ss_dssp ECEEEESCCCC
T ss_pred EEEEEEecccC
Confidence 99999987764
No 34
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=4.4e-15 Score=129.13 Aligned_cols=84 Identities=10% Similarity=0.284 Sum_probs=73.9
Q ss_pred ccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
......|||+|||+.+++++|. ++|++||+|..|.|.+++..+ ..+++|||+|.+.++|.+||..|||..++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQ---EKFCDYGEIKNIHLNLDRRTG-----FSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEECCBCTTTS-----SBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3456789999999999998876 699999999999998776432 24778999999999999999999999999
Q ss_pred CceEEEeecCCc
Q 003956 186 GRPLRACFGTTK 197 (784)
Q Consensus 186 GRvLRASfGTTK 197 (784)
|+.|+|.|+..+
T Consensus 95 g~~l~V~~a~~~ 106 (110)
T 1oo0_B 95 GQTIQVDWCFVK 106 (110)
T ss_dssp TEECEEEESEES
T ss_pred CcEEEEEEcccC
Confidence 999999998765
No 35
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=136.86 Aligned_cols=83 Identities=22% Similarity=0.390 Sum_probs=71.3
Q ss_pred ccCeEEEeCCCCCCChHHHHH-HHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 108 QRNLVYIIGLPINLADEDLLQ-RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR-~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
..+.|||+|||+.+++++|.+ -.++|++||+|.+|.|.++ +. .+|+|||+|.+.++|.+||..|||..++|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~--~~------~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS--DD------NSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC--CS------SCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC--CC------cCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 467899999999999887632 1479999999999988653 21 36789999999999999999999999999
Q ss_pred ceEEEeecCCcc
Q 003956 187 RPLRACFGTTKY 198 (784)
Q Consensus 187 RvLRASfGTTKY 198 (784)
|+|+|.|+..+-
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999998764
No 36
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.8e-15 Score=127.96 Aligned_cols=85 Identities=21% Similarity=0.423 Sum_probs=75.0
Q ss_pred cccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC------
Q 003956 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH------ 180 (784)
Q Consensus 107 IQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLD------ 180 (784)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALG---EVLQQFGDLKYVRVVLHPDTE-----HSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCBCSSSC-----CBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----CCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 356789999999999998876 699999999999998876532 247789999999999999999999
Q ss_pred CCccCCceEEEeecCCccc
Q 003956 181 SYILDGRPLRACFGTTKYC 199 (784)
Q Consensus 181 G~~LdGRvLRASfGTTKYC 199 (784)
|..++|+.|+|.|+..+--
T Consensus 85 ~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp CEESSSCEEEEECCCCCCC
T ss_pred CcEEcCEEEEEEECCCCcc
Confidence 9999999999999987643
No 37
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=6e-15 Score=127.40 Aligned_cols=79 Identities=22% Similarity=0.449 Sum_probs=71.6
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.++..+. .+++|||+|.+.++|.+||+.|||..++|+
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQ---ELFAEFGTLKKAAVHYDRSGR------SLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECTTSC------EEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCCC------cceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 35789999999999999876 799999999999999887432 477899999999999999999999999999
Q ss_pred eEEEeecC
Q 003956 188 PLRACFGT 195 (784)
Q Consensus 188 vLRASfGT 195 (784)
.|+|.|++
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 99999986
No 38
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.7e-15 Score=128.18 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=73.6
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLR---RVFEKYGRVGDVYIPREPHTK-----APRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEECCBCSSSC-----SBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCeEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEeCCCCC-----CCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 46789999999999999886 699999999999998776532 2467899999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+.
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 99999987653
No 39
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.58 E-value=1.3e-14 Score=130.37 Aligned_cols=105 Identities=16% Similarity=0.402 Sum_probs=87.6
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
++.|||+|||+.+++++|. ++|++||+|..|.|.+++..+ .++++|||+|.+.++|.+|++.+||..++|+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~~~~~~~~~-----~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFR---SLFGSIGEIESCKLVRDKITG-----QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cceEEEcCCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCC-----cceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 5789999999999998876 699999999999998876432 24788999999999999999999999999999
Q ss_pred EEEeecCCcc-----ccccccCcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 189 LRACFGTTKY-----CHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 189 LRASfGTTKY-----Cs~FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
|++.|+..+. +..|++|.+ ...|.+||.....+
T Consensus 74 l~v~~~~~~~~~~~~~~l~v~nl~----------------~~~t~~~l~~~f~~ 111 (167)
T 1fxl_A 74 IKVSYARPSSASIRDANLYVSGLP----------------KTMTQKELEQLFSQ 111 (167)
T ss_dssp CEEEECCCCCGGGTTCEEEEESCC----------------TTCCHHHHHHHHGG
T ss_pred EEEEecCCCcccCCCCcEEECCCC----------------CcCCHHHHHHHHHh
Confidence 9999987543 334555554 46789998877665
No 40
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.5e-15 Score=126.32 Aligned_cols=86 Identities=15% Similarity=0.265 Sum_probs=72.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
..+.|||+|||+.+++++|. ++|++||+|..|.|.+++.... ....+++|||+|.+.++|.+||+.|||..++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~g--t~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLK---GVFSKVGAIKSCTISKKKNKAG--VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEEEECTTC--CEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCCC--CcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 35789999999999998876 7999999999999987654100 001467899999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+.
T Consensus 79 ~l~V~~a~~~~ 89 (98)
T 2cpf_A 79 KLEVRISERAT 89 (98)
T ss_dssp ECEEECSSCSS
T ss_pred EEEEEEccCCC
Confidence 99999987754
No 41
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.57 E-value=5.8e-15 Score=123.02 Aligned_cols=82 Identities=17% Similarity=0.283 Sum_probs=72.4
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++... .++++|||+|.+.++|.+|| .+||..++|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~ 75 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELE---AHFHGCGSVNRVTILCDKFSG-----HPKGFAYIEFSDKESVRTSL-ALDESLFRGR 75 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHH---HHHGGGCCEEEEEEEESCSSS-----SCCEEEEEEESSTHHHHHHG-GGTTCEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHH-hcCCCEECCc
Confidence 45789999999999998876 699999999999998876432 24788999999999999999 9999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.++.++.
T Consensus 76 ~l~V~~a~~~~ 86 (89)
T 3ucg_A 76 QIKVIPKRTNR 86 (89)
T ss_dssp ECEEEETTTTS
T ss_pred EEEEEEccCCC
Confidence 99999987653
No 42
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.57 E-value=5.1e-15 Score=129.94 Aligned_cols=83 Identities=22% Similarity=0.426 Sum_probs=73.7
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+.|||..++||
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLL---QMFMPFGNVVSAKVFIDKQTN-----LSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHH---HHHGGGSCCSEEEEEECSSSC-----SEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCCC-----CcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 45789999999999998876 699999999999998876432 2478999999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+-
T Consensus 96 ~l~V~~a~~~~ 106 (115)
T 2cpz_A 96 RLKVQLKRSKN 106 (115)
T ss_dssp ECEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 99999987764
No 43
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.9e-15 Score=127.06 Aligned_cols=84 Identities=15% Similarity=0.314 Sum_probs=74.1
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.+++..+ ..+++|||+|.+.++|.+||+.|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLK---DIFSEVGPVVSFRLVYDRETG-----KPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp HSCEEEESCCTTSCHHHHH---HHHHTTSCCSEEEEEEETTTT-----EEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred ccEEEEeCCCCcCCHHHHH---HHHHhcCCeeEEEEEeCCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 4679999999999999876 699999999999998876432 24789999999999999999999999999999
Q ss_pred EEEeecCCcccc
Q 003956 189 LRACFGTTKYCH 200 (784)
Q Consensus 189 LRASfGTTKYCs 200 (784)
|+|.|+..+.-.
T Consensus 80 l~v~~a~~~~~~ 91 (104)
T 1p1t_A 80 LRVDNAASEKNK 91 (104)
T ss_dssp BEEEETTCTTHH
T ss_pred EEEEeCCCccch
Confidence 999998876543
No 44
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.4e-15 Score=126.80 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=70.6
Q ss_pred cCeEEEeCCCCCCChHHHHH-HHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 109 RNLVYIIGLPINLADEDLLQ-RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR-~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
...|||+|||+.+++++|.+ -.++|++||+|.+|.|.+++.+ +++|||+|.+.++|.+||+.|||..++||
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--------rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--------QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--------TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--------CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 46799999999999998751 1269999999999999877643 44799999999999999999999999999
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|+|.|+..+
T Consensus 81 ~l~V~~a~~~ 90 (96)
T 2dgx_A 81 KILVSLATGA 90 (96)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEcCCC
Confidence 9999998654
No 45
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.8e-15 Score=130.34 Aligned_cols=81 Identities=27% Similarity=0.505 Sum_probs=72.6
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||..+++++|. ++|++||+|..|.|.+++.+ .+++|||+|.+.++|.+||+.|||..++||
T Consensus 28 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~-------~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLR---QMFGQFGKILDVEIIFNERG-------SKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHGGGTCCCSCEEECCBTTB-------CTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCcCCHHHHH---HHHHhcCCEEEEEEEECCCC-------CceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 35779999999999999876 69999999999999877532 377899999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..|.
T Consensus 98 ~l~V~~a~~~~ 108 (109)
T 2err_A 98 KIEVNNATARV 108 (109)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCc
Confidence 99999998763
No 46
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.1e-15 Score=128.35 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=74.6
Q ss_pred cccccCeEEEeCCCCCCChHHHHHHHHhhccCCceE--------EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 003956 105 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL--------KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 176 (784)
Q Consensus 105 RVIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~--------KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI 176 (784)
...+...|||+|||+.+++++|. ++|++||.|. +|.|.+++... ..+++|||+|.+.++|.+||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~Ai 82 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLA---DFFKQCGVVKMNKRTGQPMIHIYLDKETG-----KPKGDATVSYEDPPTAKAAV 82 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHH---HHHTTTSCBCBCSSSCCBSEECCBCTTTC-----SBCSEEEEEBSSHHHHHHHH
T ss_pred cCCCCCEEEEcCCCCCCCHHHHH---HHHHhcCCEeEccccCccCEEEEEeCCCC-----CeeeEEEEEECCHHHHHHHH
Confidence 34457889999999999998876 7999999999 68888775432 24778999999999999999
Q ss_pred HHhCCCccCCceEEEeecCCcc
Q 003956 177 QSVHSYILDGRPLRACFGTTKY 198 (784)
Q Consensus 177 ~aLDG~~LdGRvLRASfGTTKY 198 (784)
+.|||..++||.|+|.|+..+-
T Consensus 83 ~~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 83 EWFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp HHHTTCEETTEECEEECSSCCC
T ss_pred HHcCCCccCCCEEEEEECCCCC
Confidence 9999999999999999987764
No 47
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.56 E-value=7.8e-15 Score=129.33 Aligned_cols=81 Identities=19% Similarity=0.399 Sum_probs=72.5
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++++|||+|.+.++|.+||+.+||..++||.
T Consensus 26 ~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLR---GIFEPFGRIESIQLMMDSETG-----RSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp CEEEEEECCCSSCCHHHHH---HHHTTTSCEEEEEEEEETTTT-----EEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4679999999999999876 699999999999998876533 24789999999999999999999999999999
Q ss_pred EEEeecCCc
Q 003956 189 LRACFGTTK 197 (784)
Q Consensus 189 LRASfGTTK 197 (784)
|+|.|+..|
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999998765
No 48
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.56 E-value=8.6e-15 Score=130.53 Aligned_cols=81 Identities=19% Similarity=0.318 Sum_probs=72.6
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|.+|.|.++..+. .+++|||+|.+.++|.+||+.|||..++|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g~------~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLK---AVFGKHGPISEVLLIKDRTSK------SRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHH---HHHHTSSCCSEEEEECSTTTT------CCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCCC------cccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 35789999999999999876 699999999999999876432 477899999999999999999999999999
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|+|.|+..+
T Consensus 77 ~l~V~~a~~~ 86 (116)
T 2fy1_A 77 AIKVEQAKKP 86 (116)
T ss_dssp BCEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998754
No 49
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.56 E-value=1.1e-14 Score=129.73 Aligned_cols=85 Identities=19% Similarity=0.380 Sum_probs=75.7
Q ss_pred cccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 107 IQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .+++|||+|.+.++|.+||+.|||..++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~g~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQ---ELFAEFGTLKKAAVDYDRSGR------SLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHH---HHHHTTSCCSEEEEECCSSSS------CCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEECCCCC------EeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 456789999999999999876 699999999999998877432 47789999999999999999999999999
Q ss_pred ceEEEeecCCcccc
Q 003956 187 RPLRACFGTTKYCH 200 (784)
Q Consensus 187 RvLRASfGTTKYCs 200 (784)
|.|+|.|++.+...
T Consensus 104 ~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 104 RPMDIQLVASQIDL 117 (124)
T ss_dssp CEEEEEEECCTTCC
T ss_pred cEEEEEEeCCCCCC
Confidence 99999999887653
No 50
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.56 E-value=7.3e-15 Score=126.67 Aligned_cols=84 Identities=19% Similarity=0.417 Sum_probs=73.6
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc---
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL--- 184 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L--- 184 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. ..+++|||+|.+.++|.+||+.|||..+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLK---PLFEEFGKIYELTVLKDRFTG-----MHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHH---HHHHHHSCCCEEECCCCSSSC-----SCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 35679999999999998876 699999999999998876532 2478899999999999999999999998
Q ss_pred CCceEEEeecCCccc
Q 003956 185 DGRPLRACFGTTKYC 199 (784)
Q Consensus 185 dGRvLRASfGTTKYC 199 (784)
+|+.|+|.|+..+.-
T Consensus 84 ~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 84 MNRPIQVKPADSESR 98 (106)
T ss_dssp CSSCCEEEECCCCSC
T ss_pred CCceEEEEECCcccc
Confidence 899999999987643
No 51
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=126.36 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=71.5
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .+++|||+|.+.++|.+||+.|||..++|+.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~i~~~~~g~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLK---EVFSMAGVVVRADILEDKDGK------SRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CSCEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTCS------EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCCC------eeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 5689999999999998876 699999999999998876532 4778999999999999999999999999999
Q ss_pred EEEeecCC
Q 003956 189 LRACFGTT 196 (784)
Q Consensus 189 LRASfGTT 196 (784)
|+|.|+..
T Consensus 86 l~v~~a~~ 93 (114)
T 2do0_A 86 MHVKMDER 93 (114)
T ss_dssp CEEEECSC
T ss_pred EEEEEccc
Confidence 99999765
No 52
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.55 E-value=1.8e-14 Score=130.24 Aligned_cols=110 Identities=16% Similarity=0.312 Sum_probs=86.5
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
.+.|||+|||+.+++++|. ++|++||+|.+|.|.+++..+ ..+++|||+|.+.++|.+||+.+||..++|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 74 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELY---ALFRAIGPINTCRIMRDYKTG-----YSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR 74 (168)
T ss_dssp CSEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCEETTTT-----EECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ccEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEEeCCCC-----ccceEEEEEECCHHHHHHHHHhcCCCEeCCcE
Confidence 4689999999999998876 699999999999998876432 14678999999999999999999999999999
Q ss_pred EEEeecCCccccccccCcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 189 LRASfGTTKYCs~FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
|++.|+..+-- -....++|+.-+. ...|++||.....+
T Consensus 75 l~v~~~~~~~~--------~~~~~~l~v~nl~---~~~t~~~l~~~f~~ 112 (168)
T 1b7f_A 75 LKVSYARPGGE--------SIKDTNLYVTNLP---RTITDDQLDTIFGK 112 (168)
T ss_dssp CEEEECCCCSS--------TTTTCEEEEESCC---TTCCHHHHHHHHTS
T ss_pred EEEEecCCCcc--------cCCCCCEEEeCCC---CCCCHHHHHHhhhc
Confidence 99999875321 0112233333333 45889999877655
No 53
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.55 E-value=8.7e-15 Score=133.42 Aligned_cols=83 Identities=27% Similarity=0.425 Sum_probs=73.9
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. ..+++|||+|.+.++|.+||+.|||..|+|+
T Consensus 45 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLR---EVFSKYGPIADVSIVYDQQSR-----RSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHH---HHHTTTSCEEEEEEECCSSSS-----CCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45789999999999999876 799999999999998876533 2578899999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
+|+|.|+..|.
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999998763
No 54
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=130.33 Aligned_cols=84 Identities=12% Similarity=0.245 Sum_probs=74.5
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.+. ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLR---QLFERYGPIESVKIVCDRETR-----QSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHH---HHHHHHSCEEEEEEEEETTTT-----EEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 45789999999999998876 699999999999998876532 2478999999999999999999999999999
Q ss_pred eEEEeecCCccc
Q 003956 188 PLRACFGTTKYC 199 (784)
Q Consensus 188 vLRASfGTTKYC 199 (784)
.|+|.|+..+.-
T Consensus 113 ~l~v~~a~~~~~ 124 (139)
T 1u6f_A 113 RLKVALAASGHQ 124 (139)
T ss_dssp EEEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999987643
No 55
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=125.30 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=71.5
Q ss_pred cccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 107 IQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
.....|||+|||+.+++++|. ++|++||+|..|.|.++.. .+++|||+|.+.++|.+||+.|||..++|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~~~i~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIE---DVFYKYGAIRDIDLKNRRG--------GPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEECCSSS--------SSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCC--------CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 356789999999999998876 7999999999999965432 36789999999999999999999999999
Q ss_pred ceEEEeecCCcc
Q 003956 187 RPLRACFGTTKY 198 (784)
Q Consensus 187 RvLRASfGTTKY 198 (784)
+.|+|.|+..+.
T Consensus 89 ~~l~V~~a~~~~ 100 (109)
T 1x4a_A 89 YRLRVEFPRSGR 100 (109)
T ss_dssp EECEEECCCCCC
T ss_pred eEEEEEEcccCC
Confidence 999999987754
No 56
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.55 E-value=8.7e-15 Score=130.05 Aligned_cols=85 Identities=13% Similarity=0.314 Sum_probs=73.9
Q ss_pred ccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
......|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+.|||..|+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIH---DKFAEYGEIKNIHLNLDRRTG-----YLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCBCTTTS-----SBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3446789999999999998876 699999999999998776432 24678999999999999999999999999
Q ss_pred CceEEEeecCCcc
Q 003956 186 GRPLRACFGTTKY 198 (784)
Q Consensus 186 GRvLRASfGTTKY 198 (784)
|+.|+|.|+..+-
T Consensus 91 g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 91 GQPISVDWCFVRG 103 (126)
T ss_dssp SSBCEEEESEESS
T ss_pred CeEEEEEEecCCC
Confidence 9999999987653
No 57
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=9.8e-15 Score=128.86 Aligned_cols=80 Identities=19% Similarity=0.378 Sum_probs=70.9
Q ss_pred cccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 107 IQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
+....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .+|+|||+|.+.++|.+||. +||..++|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~---~~F~~~G~v~~v~i~~d~~g~------~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIK---EWLEDKGQVLNIQMRRTLHKA------FKGSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHH---HHHHTSSCEEEEEEECCCTTS------CCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred CCCCEEEEECCCCCCCHHHHH---HHHhhcCCEEEEEEEECCCCC------CccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 456789999999999998876 799999999999999876532 57899999999999999999 89999999
Q ss_pred ceEEEeecCC
Q 003956 187 RPLRACFGTT 196 (784)
Q Consensus 187 RvLRASfGTT 196 (784)
|.|+|.+...
T Consensus 79 r~l~V~~~~~ 88 (103)
T 1s79_A 79 TDLLILFKDD 88 (103)
T ss_dssp TTCEEEEHHH
T ss_pred EEEEEEEchH
Confidence 9999997543
No 58
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.55 E-value=4.3e-15 Score=125.47 Aligned_cols=79 Identities=9% Similarity=0.229 Sum_probs=69.5
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|.+||+|..+.+.+++... .++++|||+|.+.++|.+||+.|||..++||.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~~g-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEIL---DFFYGYQVIPGSVCLKYNEKG-----MPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp CEEEEEECCCTTCCHHHHH---HHTTTSCBCTTCCEEEECTTS-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCccceEEEEeCCCC-----CEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 4689999999999999986 699999999988777655432 24789999999999999999999999999999
Q ss_pred EEEeecC
Q 003956 189 LRACFGT 195 (784)
Q Consensus 189 LRASfGT 195 (784)
|+|.+++
T Consensus 87 l~v~~a~ 93 (95)
T 2ek1_A 87 VKLSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEecc
Confidence 9999875
No 59
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=122.83 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCccccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 003956 102 TNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS 181 (784)
Q Consensus 102 a~VRVIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG 181 (784)
..-+....+.|||+|||+.+++++|. ++|++||+|..|.|.+. +++|||+|.+.++|.+||+.|||
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g 75 (97)
T 1why_A 10 GYGKANPTTRLWVGGLGPNTSLAALA---REFDRFGSIRTIDHVKG-----------DSFAYIQYESLDAAQAACAKMRG 75 (97)
T ss_dssp CCCCCCCCSCEEEECCCSSCCHHHHH---HHHHTTSCEEEEEECSS-----------SCCEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEeCC-----------CCEEEEEECCHHHHHHHHHHHCC
Confidence 33344556889999999999998876 69999999999988743 34799999999999999999999
Q ss_pred CccC--CceEEEeecCCc
Q 003956 182 YILD--GRPLRACFGTTK 197 (784)
Q Consensus 182 ~~Ld--GRvLRASfGTTK 197 (784)
..++ |+.|+|.|+..+
T Consensus 76 ~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 76 FPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CBCSSSSCBCEEEECCCC
T ss_pred CEeCCCCcEEEEEECCCC
Confidence 9999 999999999876
No 60
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.55 E-value=7.4e-15 Score=129.15 Aligned_cols=79 Identities=18% Similarity=0.390 Sum_probs=70.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+.|||..++||
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLA---STFLPFGNVISAKVFIDKQTS-----LSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHH---HHTTTSCEEEEEEECCCSSSS-----CCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEeCCCCC-----CcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 45789999999999998876 699999999999998776432 2578899999999999999999999999999
Q ss_pred eEEEeec
Q 003956 188 PLRACFG 194 (784)
Q Consensus 188 vLRASfG 194 (784)
+|+|.|+
T Consensus 111 ~l~V~~a 117 (118)
T 2khc_A 111 RLKVQLK 117 (118)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 9999986
No 61
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.1e-15 Score=123.56 Aligned_cols=79 Identities=15% Similarity=0.264 Sum_probs=70.1
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+.|||..++||.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLV---KLCQPYGKIVSTKAILDKTTN-----KCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCEEEEESCCTTCCHHHHH---TTSTTTSCEEEEEEECCSSSC-----SCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----CcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 4689999999999998876 799999999999998876432 24778999999999999999999999999999
Q ss_pred EEEeecC
Q 003956 189 LRACFGT 195 (784)
Q Consensus 189 LRASfGT 195 (784)
||+++..
T Consensus 77 ~~~~~~~ 83 (85)
T 1x4e_A 77 AKQSGPS 83 (85)
T ss_dssp CCSSCCC
T ss_pred EeecCCC
Confidence 9988754
No 62
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=6.9e-15 Score=125.39 Aligned_cols=82 Identities=13% Similarity=0.271 Sum_probs=72.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceE-EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL-KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~-KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
....|||+|||+.+++++|. ++|++||+|. .|.|.+++... .++++|||+|.+.++|.+||+.|||..++|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFIS---RAFATMGETVMSVKIIRNRLTG-----IPAGYCFVEFADLATAEKCLHKINGKPLPG 79 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHH---HHHHHTTCCCCEEEEEECSSSC-----CEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHHhCCcceEEEEeecCCCC-----CcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 46789999999999998876 6999999999 99998876432 247789999999999999999999999999
Q ss_pred ce----EEEeecCCc
Q 003956 187 RP----LRACFGTTK 197 (784)
Q Consensus 187 Rv----LRASfGTTK 197 (784)
+. |++.|++..
T Consensus 80 ~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 80 ATPAKRFKLNYATYS 94 (99)
T ss_dssp CSSCEECCEEETTCC
T ss_pred CCcceeEEEeecCCC
Confidence 99 999998754
No 63
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.54 E-value=1.5e-14 Score=121.56 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=71.0
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.++ .+ ..+++|||+|.+.++|.+||+.|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~---~~f~~~G~v~~~~i~~~-~g------~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLK---DKFNECGHVLYADIKME-NG------KSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp CCEEEECSCCTTCCHHHHH---HHHHTTSCEEEEEEEES-SS------CEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEcc-CC------CcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 5689999999999998876 69999999999999874 22 24778999999999999999999999999999
Q ss_pred EEEeecCCcc
Q 003956 189 LRACFGTTKY 198 (784)
Q Consensus 189 LRASfGTTKY 198 (784)
|+|.|+..+.
T Consensus 78 l~v~~a~~~~ 87 (92)
T 2dgv_A 78 IDVRIDRNAS 87 (92)
T ss_dssp CCCEECSCCS
T ss_pred EEEEEcCCCC
Confidence 9999987653
No 64
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=127.35 Aligned_cols=84 Identities=18% Similarity=0.272 Sum_probs=73.3
Q ss_pred cccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 105 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 105 RVIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
.......|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+|| .|||..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~-~l~g~~~ 91 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLE---DFFSAVGKVRDVRIISDRNSR-----RSKGIAYVEFCEIQSVPLAI-GLTGQRL 91 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEECCSCCSS-----SCCCCEEEEESCGGGHHHHH-HHTTEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHH---HHHHhCCCEeEEEEEecCCCC-----ccCcEEEEEeCcHHHHHHHH-HcCCCEe
Confidence 34456899999999999998876 699999999999998776532 24778999999999999999 9999999
Q ss_pred CCceEEEeecCCc
Q 003956 185 DGRPLRACFGTTK 197 (784)
Q Consensus 185 dGRvLRASfGTTK 197 (784)
+|+.|+|.|+..+
T Consensus 92 ~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 92 LGVPIIVQASQAE 104 (114)
T ss_dssp TTEEEEEEEHHHH
T ss_pred CCeEEEEEecCCC
Confidence 9999999997654
No 65
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.54 E-value=2.7e-15 Score=125.89 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=68.9
Q ss_pred CeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 003956 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (784)
Q Consensus 110 NLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvL 189 (784)
..|||+|||+.+++++|. ++|++||+|..|.|.+++..+ .++++|||+|.+.+ |.+||+.|||..++||.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVK---ELFSQFGKVFNVKLIYDRETK-----KPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHT---TTHHHHTCCSEEEECCCSSSC-----CCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHH---HHHHhcCCEEEEEEEEcCCCC-----CcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 369999999999998876 799999999999998876532 25789999999999 999999999999999999
Q ss_pred EEeecCCccccc
Q 003956 190 RACFGTTKYCHA 201 (784)
Q Consensus 190 RASfGTTKYCs~ 201 (784)
+|.+++.+....
T Consensus 73 ~V~~a~~~~~~~ 84 (90)
T 2ki2_A 73 RVTEANPKKSLE 84 (90)
T ss_dssp SEEEC-------
T ss_pred EEEEcCCCCCCC
Confidence 999998876643
No 66
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=129.88 Aligned_cols=79 Identities=19% Similarity=0.384 Sum_probs=70.2
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++... ..+++|||+|.+.++|.+||+.|||..++||
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLH---AAFIPFGDITDIQIPLDYETE-----KHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHH---HHHGGGSCEEEEECCCCTTTC-----CCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCcEEEEEeCCCCCCHHHHH---HHHHhcCCEEEEEEeecCCCC-----CcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 46789999999999998876 699999999999998875432 2578899999999999999999999999999
Q ss_pred eEEEeec
Q 003956 188 PLRACFG 194 (784)
Q Consensus 188 vLRASfG 194 (784)
.|+|.|+
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999885
No 67
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.3e-14 Score=128.66 Aligned_cols=102 Identities=14% Similarity=0.313 Sum_probs=85.0
Q ss_pred eEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 003956 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (784)
Q Consensus 111 LVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvLR 190 (784)
.|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .+++|||+|.+.++|.+|++.+||..+.|+.|+
T Consensus 2 ~l~V~nlp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~------~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 72 (166)
T 3md3_A 2 VLYVGNLDKAITEDILK---QYFQVGGPIANIKIMIDKNNK------NVNYAFVEYHQSHDANIALQTLNGKQIENNIVK 72 (166)
T ss_dssp EEEEEEEETTCCHHHHH---HHHGGGSCEEEEEEECCCC-C------CEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred EEEECCCCCcCCHHHHH---HHHHhcCCeEEEEEEECCCCC------CCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeE
Confidence 58999999999998876 699999999999998876543 477899999999999999999999999999999
Q ss_pred EeecCCcc-------ccccccCcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 191 ACFGTTKY-------CHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 191 ASfGTTKY-------Cs~FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
+.++..+- +..|++|.+ ...|++||.....+
T Consensus 73 v~~~~~~~~~~~~~~~~l~v~nl~----------------~~~t~~~l~~~f~~ 110 (166)
T 3md3_A 73 INWAFQSQQSSSDDTFNLFVGDLN----------------VNVDDETLRNAFKD 110 (166)
T ss_dssp EEECCCCCCCCCTTCEEEEEESCC----------------TTCCHHHHHHHHTT
T ss_pred EEEcCCCCCCCCCCCceEEECCCC----------------CCCCHHHHHHHHhc
Confidence 99985542 334555544 46789999877655
No 68
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=123.62 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=71.5
Q ss_pred ccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
..+...|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||+.|||..++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~~~~~-----------kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMR---KLFEKYGKAGEVFIHKD-----------KGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHH---HHTSTTCCCSEEEEETT-----------TTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHhhcCCeEEEEEecC-----------CCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3456789999999999998876 69999999999998743 457999999999999999999999999
Q ss_pred CceEEEeecCCccc
Q 003956 186 GRPLRACFGTTKYC 199 (784)
Q Consensus 186 GRvLRASfGTTKYC 199 (784)
|+.|+|.|+..+-.
T Consensus 78 g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 78 GKQLRVRFACHSAS 91 (99)
T ss_dssp TBCCEEEESSCCSC
T ss_pred CceEEEEEcCCCCC
Confidence 99999999987654
No 69
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.54 E-value=7.6e-15 Score=119.33 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=66.7
Q ss_pred eEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 003956 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (784)
Q Consensus 111 LVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvLR 190 (784)
.|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++++|||+|.+.++|.+|++ +||..++||.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVK---HYFEQFGKVDDAMLMFDKTTN-----RHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHH---HHHHTTSCCSEECCCBCSSST-----TSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----CcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 48999999999999876 699999999999998776432 257899999999999999998 999999999999
Q ss_pred Eeec
Q 003956 191 ACFG 194 (784)
Q Consensus 191 ASfG 194 (784)
+.++
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9875
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=124.85 Aligned_cols=82 Identities=17% Similarity=0.302 Sum_probs=73.0
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhcc-CCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc-cC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQ-YGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI-LD 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQ-YGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~-Ld 185 (784)
+...|||+|||+.+++++|. ++|++ ||+|..|.|.+++.+. .+++|||+|.+.++|.+||+.|||.. ++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~---~~F~~~~G~v~~v~i~~~~~g~------~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 78 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLY---EFFVKVYPSCRGGKVVLDQTGV------SKGYGFVKFTDELEQKRALTECQGAVGLG 78 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHH---HHHHHHCTTEEEEEEEECTTCC------EEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHhCCCeEEEEEEECCCCC------ccceEEEEECCHHHHHHHHHHccCCcccC
Confidence 35689999999999998876 69999 9999999999887432 47899999999999999999999999 99
Q ss_pred CceEEEeecCCcc
Q 003956 186 GRPLRACFGTTKY 198 (784)
Q Consensus 186 GRvLRASfGTTKY 198 (784)
|+.|+|.|+..+.
T Consensus 79 g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 79 SKPVRLSVAIPKA 91 (104)
T ss_dssp SSCCCCCBCCCCC
T ss_pred CEeEEEEEccCCC
Confidence 9999999987653
No 71
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=6.9e-15 Score=125.17 Aligned_cols=81 Identities=10% Similarity=0.283 Sum_probs=70.2
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||.|..+.+.+++... .++++|||+|.+.++|.+||+.|||..++||.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~---~~F~~~G~v~~~~~~~~~~~g-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEIL---DFFYGYQVIPGSVCLKYNEKG-----MPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp SEEEEEESCCTTCCHHHHH---HHTTTSCCCTTTCEEEECSSS-----CEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHcCCccceEEEEECCCC-----CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4679999999999999876 699999999987776654332 24789999999999999999999999999999
Q ss_pred EEEeecCCc
Q 003956 189 LRACFGTTK 197 (784)
Q Consensus 189 LRASfGTTK 197 (784)
|+|.|+..+
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999998653
No 72
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.53 E-value=6.7e-15 Score=122.13 Aligned_cols=73 Identities=15% Similarity=0.373 Sum_probs=62.6
Q ss_pred CeEEEeCCCCCC------ChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 003956 110 NLVYIIGLPINL------ADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (784)
Q Consensus 110 NLVYV~GLP~~I------AeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~ 183 (784)
+.|||+|||+.+ ++++|. ++|++||+|.+|.|.+. .+ .++++|||+|.+.++|.+||+.|||..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~---~~F~~~G~i~~v~i~~~-~g------~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIH---KIFSKFGKITNDFYPEE-DG------KTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHH---HHHHTTCCEEEEECCCB-TT------BCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHH---HHHhhcCCeEEEEecCC-CC------cEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 679999999998 446655 79999999999998842 22 247889999999999999999999999
Q ss_pred cCCc-eEEEe
Q 003956 184 LDGR-PLRAC 192 (784)
Q Consensus 184 LdGR-vLRAS 192 (784)
++|| +|+|+
T Consensus 72 ~~g~~~l~V~ 81 (81)
T 2krb_A 72 LDKQHTFRVN 81 (81)
T ss_dssp CSSSSCCCCC
T ss_pred cCCceeEEeC
Confidence 9999 99874
No 73
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.8e-14 Score=122.74 Aligned_cols=82 Identities=17% Similarity=0.353 Sum_probs=71.1
Q ss_pred ccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc-
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL- 184 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L- 184 (784)
-.....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .+++|||+|.+.++|.+||+.|||..+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~g~------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELE---NMLKPFGQVISTRILRDSSGT------SRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHH---HTTTTTSCEEEEEEEECSSSC------EEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCCC------cceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 3456789999999999998876 699999999999999876432 478899999999999999999999999
Q ss_pred -------CCceEEEeecCC
Q 003956 185 -------DGRPLRACFGTT 196 (784)
Q Consensus 185 -------dGRvLRASfGTT 196 (784)
.|++|+|.|+..
T Consensus 93 ~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 93 TPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp CCTTSCCCSSCBEEEECCC
T ss_pred CCccccCCCCceeEEccCC
Confidence 577788888764
No 74
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.53 E-value=9.9e-15 Score=137.61 Aligned_cols=84 Identities=13% Similarity=0.253 Sum_probs=73.5
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCC--ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYG--KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYG--KI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
.+..|||+|||+.+++++|. ++|++|| +|..|.|.+++..+ ..+|+|||+|.+.++|.+||+.|||..|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~---~~F~~~G~i~v~~v~i~~d~~tg-----~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLI---QVIRSIGVYDVVELKFAENRANG-----QSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHH---HHHHHTTCCCEEEEEEEECTTTC-----CEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHHCCccEEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35789999999999998876 7999999 99999999886543 24789999999999999999999999999
Q ss_pred CceEEEeecCCccc
Q 003956 186 GRPLRACFGTTKYC 199 (784)
Q Consensus 186 GRvLRASfGTTKYC 199 (784)
||.|+|.+++.+..
T Consensus 126 Gr~l~V~~a~~~~~ 139 (156)
T 3n9u_C 126 GEKVDVRPATRQNL 139 (156)
T ss_dssp TEECEEEECCHHHH
T ss_pred CeEeEEEEcCCCcc
Confidence 99999999876654
No 75
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.53 E-value=3e-14 Score=131.45 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=73.2
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|.+||+|..|.|.+++.+. ..+++|||+|.+.++|.+||+.|||..|+|+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIY---ELFSKSGDIKKIIMGLDKMKK-----TACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 35789999999999998876 699999999999998876532 2477999999999999999999999999999
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|+|.|++.+
T Consensus 110 ~l~V~~a~~~ 119 (156)
T 1h2v_Z 110 IIRTDWDAGF 119 (156)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEECCCC
Confidence 9999998764
No 76
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=124.99 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=71.2
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCc-eEEEEEe-ecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC--CCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGK-VLKVSIS-RTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH--SYI 183 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGK-I~KIvIn-rdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLD--G~~ 183 (784)
..+.|||+|||+.+++++|. ++|++||. |..|.|. +++... ..+++|||+|.+.++|.+||+.|| +..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~---~~f~~~G~~v~~v~i~~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~~g~~~ 78 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEIL---EEIAKVTEGVLDVIVYASAADKM-----KNRGFAFVEYESHRAAAMARRKLMPGRIQ 78 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHH---HHHHHHSTTEEEEECCSSSCTTT-----TTCCEEEEEESSHHHHHHHHTTTTTCCSC
T ss_pred CCCEEEEeCCCCcCCHHHHH---HHHHHhcCCceEEEEEccCCCCC-----CcCcEEEEEecCHHHHHHHHHHhhCCCce
Confidence 46789999999999999886 69999999 9999987 554322 257899999999999999999996 589
Q ss_pred cCCceEEEeecCCc
Q 003956 184 LDGRPLRACFGTTK 197 (784)
Q Consensus 184 LdGRvLRASfGTTK 197 (784)
++||.|+|.|+..+
T Consensus 79 ~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 79 LWGHQIAVDWAEPE 92 (109)
T ss_dssp BTTBCCEEEESCSS
T ss_pred ecCCeEEEEEcCCC
Confidence 99999999998765
No 77
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.5e-14 Score=123.53 Aligned_cols=82 Identities=15% Similarity=0.278 Sum_probs=71.4
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++|| |..|.|.+++.... ..+++|||+|.+.++|.+|| .|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G-i~~v~i~~~~~~~g----~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIK---EFFRGLN-ISAVRLPREPSNPE----RLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHH---HHTTTSC-EEEEECCBCSSCTT----SBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCEEEEeCCCCcCCHHHHH---HHHHHCC-ceEEEEecCCCCCC----CcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 45789999999999999876 6999999 99999987765311 24678999999999999999 9999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+-
T Consensus 85 ~l~V~~a~~~~ 95 (104)
T 1wi8_A 85 RIRVDVADQAQ 95 (104)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEccCCC
Confidence 99999987763
No 78
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.5e-14 Score=124.03 Aligned_cols=75 Identities=25% Similarity=0.558 Sum_probs=67.9
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.+ .+++|||+|.+.++|.+||..|||..++|+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~~~~-----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLI---PLFQNFGFILDFKHYP-----------EKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHHTTSCCSEEEEET-----------TTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCcccCHHHHH---HHHHhCCCEEEEEEec-----------CCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4689999999999998876 6999999999999872 2568999999999999999999999999999
Q ss_pred EEEeecCCc
Q 003956 189 LRACFGTTK 197 (784)
Q Consensus 189 LRASfGTTK 197 (784)
|+|.|+..|
T Consensus 93 l~V~~a~~~ 101 (101)
T 2la4_A 93 LRTGWGKER 101 (101)
T ss_dssp CCCCBCCCC
T ss_pred EEEEeccCC
Confidence 999998764
No 79
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3e-14 Score=125.21 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=72.8
Q ss_pred ccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
-.....|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+.+++ .++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLR---KYFEGFGDIEEAVVITDRQTG-----KSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHH---HHHHTTSCEEEEEESCCSSSC-----CCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhCCCeeEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 3456789999999999999876 699999999999998876532 2577899999999999999999999 899
Q ss_pred CceEEEeecCCc
Q 003956 186 GRPLRACFGTTK 197 (784)
Q Consensus 186 GRvLRASfGTTK 197 (784)
|+.|+|.|+..+
T Consensus 85 g~~l~V~~a~~~ 96 (116)
T 2cqd_A 85 GRKANVNLAYLG 96 (116)
T ss_dssp TEECEEEESTTT
T ss_pred CEEEEEEEcccC
Confidence 999999998654
No 80
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.52 E-value=3.5e-14 Score=118.41 Aligned_cols=78 Identities=18% Similarity=0.373 Sum_probs=68.1
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||+. +|..++||
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLK---DYFTKFGEVVDCTIKMDPNTG-----RSRGFGFILFKDAASVEKVLDQ-KEHRLDGR 80 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTTC-----CEEEEEEEEESSTHHHHHHHHS-SCEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEeecCCCC-----ccccEEEEEECCHHHHHHHHHh-CCCEECCE
Confidence 45789999999999998876 699999999999998876532 2478899999999999999965 88999999
Q ss_pred eEEEeec
Q 003956 188 PLRACFG 194 (784)
Q Consensus 188 vLRASfG 194 (784)
.|+|.++
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999875
No 81
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=2.9e-14 Score=124.83 Aligned_cols=79 Identities=20% Similarity=0.469 Sum_probs=70.7
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
.+.|||+|||+.+++++|. ++|++||.|..|.|.++.. .+++|||+|.+.++|.+||+.|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMY---DIFGKYGPIRQIRVGNTPE--------TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEECSTT--------TTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeeCCC--------CCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 5789999999999998876 7999999999999986532 2668999999999999999999999999999
Q ss_pred EEEeecCCcc
Q 003956 189 LRACFGTTKY 198 (784)
Q Consensus 189 LRASfGTTKY 198 (784)
|+|.|+..+.
T Consensus 77 l~v~~a~~~~ 86 (115)
T 3lqv_A 77 LVVLYYNANR 86 (115)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEecCCh
Confidence 9999987653
No 82
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.52 E-value=5.7e-14 Score=132.16 Aligned_cols=118 Identities=15% Similarity=0.289 Sum_probs=85.0
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|.+||+|..|.|.++.... ..+++|||+|.+.++|.+||+.+||..++|+.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIR---QAFAPFGPIKSIDMSWDSVTM-----KHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp HTEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEECCC-CC------CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred CCEEEEECCCCCCCHHHHH---HHHHhCCCEEEEEEeecCCCC-----ccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 3579999999999998876 799999999999998776432 24778999999999999999999999999999
Q ss_pred EEEeecCCccccc-ccc--CcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 189 LRACFGTTKYCHA-WIR--NMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 189 LRASfGTTKYCs~-FLR--n~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
|++.+...+.-.. ... ...-....++|+.-+. ..+|++||......
T Consensus 100 l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp---~~~t~~~l~~~f~~ 148 (216)
T 2qfj_A 100 IKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVH---QDLSDDDIKSVFEA 148 (216)
T ss_dssp CEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCC---TTCCHHHHHHHHTT
T ss_pred EEEecCCCccccchhhhhhhcccCCCcEEEEeCCC---CcCCHHHHHHHHhc
Confidence 9999876653100 000 0001112334443333 45789998876655
No 83
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.52 E-value=5.9e-14 Score=135.26 Aligned_cols=106 Identities=18% Similarity=0.398 Sum_probs=86.9
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
...+|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||+.+||..+.||
T Consensus 14 p~~tlfVgnLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~ 85 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLY---EKFSPAGPILSIRVCRDMITR-----RSLGYAYVNFQQPADAERALDTMNFDVIKGK 85 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhhCCEEEEEEecccCCC-----CccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence 34679999999999998876 799999999999999876543 2478999999999999999999999999999
Q ss_pred eEEEeecCCcc-------ccccccCcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 188 PLRACFGTTKY-------CHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 188 vLRASfGTTKY-------Cs~FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
.|++.++..+. ...|++|.+ ...|.+||......
T Consensus 86 ~i~~~~~~~~~~~~~~~~~~l~v~nl~----------------~~~t~~~l~~~F~~ 126 (213)
T 4f02_A 86 PVRIMWSQRDPSLRKSGVGNIFIKNLD----------------KSIDNKALYDTFSA 126 (213)
T ss_dssp ECEEEECCCCTHHHHHCTTEEEEESCC----------------TTCCHHHHHHHHGG
T ss_pred ccccccccccccccccccccceECCcc----------------cccHHHHHHHHHhh
Confidence 99999976543 234665555 45788888776554
No 84
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=125.83 Aligned_cols=78 Identities=15% Similarity=0.344 Sum_probs=67.4
Q ss_pred cCeEEEeCCCCCC------ChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 003956 109 RNLVYIIGLPINL------ADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 182 (784)
Q Consensus 109 RNLVYV~GLP~~I------AeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~ 182 (784)
.+.|||+|||+.+ ++++|. ++|++||+|..|.|.+ ..+. ++|+|||+|.+.++|.+||..|||.
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~---~~F~~~G~v~~v~i~~-~~g~------~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIH---KIFSKFGKITNDFYPE-EDGK------TKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHH---HHHGGGSCEEEEECCC-BTTB------SCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHH---HHHhcCCCEEEEEeeC-CCCC------eeeEEEEEECCHHHHHHHHHHhCCc
Confidence 4789999999998 456654 7999999999999883 2222 4788999999999999999999999
Q ss_pred ccCCc-eEEEeecCC
Q 003956 183 ILDGR-PLRACFGTT 196 (784)
Q Consensus 183 ~LdGR-vLRASfGTT 196 (784)
.++|| +|+|.+++.
T Consensus 85 ~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTD 99 (105)
T ss_dssp ECSTTCEEEEECSCC
T ss_pred ccCCCceEEEEEcch
Confidence 99999 999999864
No 85
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=130.84 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=69.0
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC--CccCC
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS--YILDG 186 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG--~~LdG 186 (784)
...|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||+.++| ..++|
T Consensus 16 ~~~LfV~nLp~~vte~dL~---~lF~~fG~V~~v~i~~~-----------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVI---SLGLPFGKVTNLLMLKG-----------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCEEEECSCCTTSCHHHHH---HHHHHHCCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 5789999999999998876 79999999999999864 35799999999999999999874 78999
Q ss_pred ceEEEeecCCcccc
Q 003956 187 RPLRACFGTTKYCH 200 (784)
Q Consensus 187 RvLRASfGTTKYCs 200 (784)
|+|+|.|+..|.-.
T Consensus 82 r~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 82 QPIYIQFSNHKELK 95 (105)
T ss_dssp EECCBCCCSSSSCC
T ss_pred EEEEEEEcCCCCCC
Confidence 99999999876543
No 86
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=129.55 Aligned_cols=76 Identities=21% Similarity=0.386 Sum_probs=66.3
Q ss_pred CeEEEeCCCCCCChHHHHHH-HHhhccC-CceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 110 NLVYIIGLPINLADEDLLQR-KEYFGQY-GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 110 NLVYV~GLP~~IAeEDLLR~-~EyFGQY-GKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
.+|||+|||+++.+++|.++ +++|++| |+|++|. +|+|||+|.+.|+|.+||+.|||+.++||
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------gG~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------GCSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------TTCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------cCEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 35999999999998776432 6899999 5999992 14699999999999999999999999999
Q ss_pred eEEEeecCCcccc
Q 003956 188 PLRACFGTTKYCH 200 (784)
Q Consensus 188 vLRASfGTTKYCs 200 (784)
+||++|++++.-.
T Consensus 75 ~i~v~~A~~~sd~ 87 (96)
T 2diu_A 75 RIIVSFTPKNREL 87 (96)
T ss_dssp CCEEESSCCSCCC
T ss_pred eEEEEecCCCcce
Confidence 9999999987653
No 87
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=3.1e-14 Score=122.74 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=71.5
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++|| |..|.|.+++.+. ..+++|||+|.+.++|.+|| .|||..++||
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g-i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDID---AIFKDLS-IRSVRLVRDKDTD-----KFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHH---HHTTTSC-EEEEEEEECSSSC-----SEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCeEEEEeCCCCCCCHHHHH---HHHHhCC-ceEEEEeecCCCC-----ccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 35789999999999998876 7999998 9999999876532 24789999999999999999 8999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+.
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dng_A 84 SLRVDIAEGRK 94 (103)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999987653
No 88
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.6e-14 Score=124.58 Aligned_cols=76 Identities=18% Similarity=0.422 Sum_probs=69.4
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.++ +++|||+|.+.++|.+||+.|||..++|+.
T Consensus 25 ~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~-----------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMR---QTFSPFGQIMEIRVFPE-----------KGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp CCEEEEECCSSCCCHHHHH---HHHHHHSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 5689999999999998876 69999999999999864 347999999999999999999999999999
Q ss_pred EEEeecCCcc
Q 003956 189 LRACFGTTKY 198 (784)
Q Consensus 189 LRASfGTTKY 198 (784)
|+|.|+..+.
T Consensus 91 l~v~~a~~~~ 100 (109)
T 1x4g_A 91 VKCYWGKESP 100 (109)
T ss_dssp CEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999988764
No 89
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.52 E-value=2.7e-14 Score=131.18 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=73.9
Q ss_pred cccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 107 IQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++..+ ..+++|||+|.+.++|.+||+.|||..++|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~---~~F~~~G~v~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLR---RVFEKYGRVGDVYIPRDRYTK-----ESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHH---HHHHHHSCEEEEECCCCSSCT-----TSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456789999999999998876 799999999999998876432 257889999999999999999999999999
Q ss_pred ceEEEeecCCc
Q 003956 187 RPLRACFGTTK 197 (784)
Q Consensus 187 RvLRASfGTTK 197 (784)
|.|+|.|+..+
T Consensus 140 ~~l~v~~a~~~ 150 (158)
T 2kn4_A 140 RELRVQMARYG 150 (158)
T ss_dssp SEEEEEEECCS
T ss_pred eEEEEEECCCC
Confidence 99999998765
No 90
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=128.59 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=67.3
Q ss_pred ccCeEEEeCCCC-CCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc--c
Q 003956 108 QRNLVYIIGLPI-NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI--L 184 (784)
Q Consensus 108 QRNLVYV~GLP~-~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~--L 184 (784)
....|||+|||+ .++++||. ++|.+||+|.+|.|.+++ ++|||+|.+.++|.+||+.|||.. |
T Consensus 14 p~~~l~V~nLp~~~~te~dL~---~lF~~fG~V~~v~i~~~k-----------g~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLL---QLVEPFGVISNHLILNKI-----------NEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHH---TTTGGGSCEEEEEECSSS-----------SCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCEEEEeCCCCCcCCHHHHH---HHHHhcCCEEEEEEEcCC-----------CEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 467899999999 99988876 799999999999998542 369999999999999999999754 9
Q ss_pred CCceEEEeecCCc
Q 003956 185 DGRPLRACFGTTK 197 (784)
Q Consensus 185 dGRvLRASfGTTK 197 (784)
+||+|+|.|+..+
T Consensus 80 ~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 80 FGKPVRVHLSQKY 92 (102)
T ss_dssp TTEECEEEEECCC
T ss_pred CCcEEEEEECCCC
Confidence 9999999999864
No 91
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=2e-14 Score=127.41 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=66.7
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
..-|||+||++++++++|+ ++|.|||+|.++.|.. ++|+|||+|.+++||.+||++|||..++||+
T Consensus 7 ~~wL~VgNL~~~~te~~L~---~lF~q~G~V~~~~l~~-----------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~ 72 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLR---TLCMQHGPLVSFHPYL-----------NQGIALCKYTTREEANKAQMALNNCVLANTT 72 (89)
T ss_dssp CCEEEEECCCTTCCCHHHH---HHHHHHSCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cceEEEeCCCccCCHHHHH---HHHHhhCCEEEEEEcC-----------CCcEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 3568999999999987765 7999999999999864 2678999999999999999999999999999
Q ss_pred EEEeecCC
Q 003956 189 LRACFGTT 196 (784)
Q Consensus 189 LRASfGTT 196 (784)
|+|.+++.
T Consensus 73 I~V~~A~e 80 (89)
T 2wbr_A 73 IFAESPSE 80 (89)
T ss_dssp EEEECCCH
T ss_pred EEEEECCH
Confidence 99999853
No 92
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=4.3e-14 Score=122.17 Aligned_cols=74 Identities=20% Similarity=0.446 Sum_probs=67.3
Q ss_pred ccCeEEEeCCCC-CCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 108 QRNLVYIIGLPI-NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 108 QRNLVYV~GLP~-~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
..+.|||+|||+ .+++++|. ++|++||+|..|.|. +++|||+|.+.++|.+||+.|||..++|
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~---~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLF---RIFSPYGHIMQINIK-------------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHH---HHHGGGSCEEEEEEC-------------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCEEEEeCCCcccCCHHHHH---HHHHhcCCEEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 467899999998 99998876 699999999999983 3479999999999999999999999999
Q ss_pred ceEEEeecCCc
Q 003956 187 RPLRACFGTTK 197 (784)
Q Consensus 187 RvLRASfGTTK 197 (784)
+.|+|.|+..+
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999998764
No 93
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.7e-14 Score=125.48 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=72.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
+...|||+|||+.+++++|. ++|.+||+|..|.|.+++.+. ..+++|||+|.+.++|.+||+. +|..|+||
T Consensus 26 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 96 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLR---NYYEQWGKLTDCVVMRDPASK-----RSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR 96 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHH---HHHTSSCCCSEEEEECCTTTS-----SCCSEEEEECSSHHHHHHHHTS-CSEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCCC-----CcCceEEEEeCCHHHHHHHHHh-CCcEECCE
Confidence 45789999999999998876 799999999999999876533 2477899999999999999999 99999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..|.
T Consensus 97 ~l~V~~a~~~~ 107 (116)
T 1x4b_A 97 VVEPKRAVARE 107 (116)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCc
Confidence 99999998764
No 94
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=121.23 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=68.9
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEE-EEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKV-SISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KI-vInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
+...|||+|||+.+++++|. ++|++||+|..| .|.+++.. +.|||+|.+.++|.+||..|||..++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~~~~i~~~~~~---------~~afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLD---SLLVQYGVVESCEQVNTDSET---------AVVNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHH---HHHHHHSCEEEEEEECCSSSS---------EEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCCCCCHHHHH---HHHHhcCCeEEEEEeecCCCC---------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999999998876 699999999999 57766432 239999999999999999999999999
Q ss_pred ceEEEeecCCc
Q 003956 187 RPLRACFGTTK 197 (784)
Q Consensus 187 RvLRASfGTTK 197 (784)
|.|+|.|+..+
T Consensus 82 ~~l~V~~a~~~ 92 (96)
T 2e44_A 82 FTLKVAYIPDE 92 (96)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEcCcc
Confidence 99999998876
No 95
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=127.16 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=68.7
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc--cC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI--LD 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~--Ld 185 (784)
....|||+|||+.+++++|. ++|++||+|.+|.|.+. +++|||+|.+.++|.+||+.++|.. +.
T Consensus 20 ps~~l~V~NLp~~~te~~L~---~lF~~fG~V~~v~i~~~-----------kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLV---EALQEFGPISYVVVMPK-----------KRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHhccCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 45689999999999999886 79999999999998742 4579999999999999999999986 78
Q ss_pred CceEEEeecCCcc
Q 003956 186 GRPLRACFGTTKY 198 (784)
Q Consensus 186 GRvLRASfGTTKY 198 (784)
||+|+|.|++.|-
T Consensus 86 Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 86 GHPAFVNYSTSQK 98 (100)
T ss_dssp TEEEEEEECSCSC
T ss_pred CcEEEEEeccccc
Confidence 9999999998763
No 96
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.7e-14 Score=124.89 Aligned_cols=78 Identities=15% Similarity=0.257 Sum_probs=68.0
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh--CCCccC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV--HSYILD 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aL--DG~~Ld 185 (784)
....|||+|||+.+++++|. ++|.+||+|.+|.|.++ +++|||+|.+.++|.+||+.+ +|..++
T Consensus 14 p~~~l~V~nLp~~~te~~L~---~~F~~fG~v~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVI---ALGLPFGKVTNILMLKG-----------KNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HTTTTTSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEECC-----------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 35689999999999998876 79999999999988753 457999999999999999987 467899
Q ss_pred CceEEEeecCCccc
Q 003956 186 GRPLRACFGTTKYC 199 (784)
Q Consensus 186 GRvLRASfGTTKYC 199 (784)
||+|+|.|+..+.-
T Consensus 80 Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 80 NQPIYIQYSNHKEL 93 (101)
T ss_dssp TEECEEEECSCSSC
T ss_pred CcEEEEEEcCcccC
Confidence 99999999976543
No 97
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.5e-14 Score=119.43 Aligned_cols=77 Identities=16% Similarity=0.374 Sum_probs=69.3
Q ss_pred cccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 107 IQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
.....|||+|||+.+++++|. ++|++||+|..|.|.++ +|||+|.+.++|.+||+.|||..++|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~v~~~~~-------------~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELR---AKFEEYGPVIECDIVKD-------------YAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHH---HHHHTTSCCCEEEECSS-------------EEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEECC-------------EEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 356789999999999998876 69999999999998732 69999999999999999999999999
Q ss_pred ceEEEeecCCccc
Q 003956 187 RPLRACFGTTKYC 199 (784)
Q Consensus 187 RvLRASfGTTKYC 199 (784)
+.|+|.|+..+.-
T Consensus 72 ~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 72 KRMHVQLSTSRLR 84 (92)
T ss_dssp EEEEEEESSCCCS
T ss_pred cEEEEEEccCCCC
Confidence 9999999987643
No 98
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.51 E-value=3.2e-14 Score=126.05 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=72.1
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+|| .|||..++|+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLE---AHFSSCGSINRITILCDKFSG-----HPKGYAYIEFAERNSVDAAV-AMDETVFRGRT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHH---HHHHTTSCEEEEEEEEECTTS-----SCEEEEEEEESSHHHHHHHH-TTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----CcccEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 4689999999999998876 699999999999998875432 25789999999999999999 89999999999
Q ss_pred EEEeecCCccc
Q 003956 189 LRACFGTTKYC 199 (784)
Q Consensus 189 LRASfGTTKYC 199 (784)
|+|.|+.+..-
T Consensus 107 l~V~~a~~~~~ 117 (124)
T 2jwn_A 107 IKVLPKRTNMP 117 (124)
T ss_dssp CEEEESSCCCS
T ss_pred EEEEECCCCCC
Confidence 99999876543
No 99
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2e-14 Score=124.05 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=74.2
Q ss_pred ccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
-.....|||+|||+.+++++|. ++|.+||+|..|.|.+++... ..+++|||+|.+.++|.+||+. ||..|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLR---SYFSQYGEVVDCVIMKDKTTN-----QSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHH---HHHHTTSCEEEEEEEECSSSC-----CEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeeCCCCC-----CcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 3456789999999999999876 699999999999999876432 2478999999999999999999 999999
Q ss_pred CceEEEeecCCccc
Q 003956 186 GRPLRACFGTTKYC 199 (784)
Q Consensus 186 GRvLRASfGTTKYC 199 (784)
|+.|+|.|+..|--
T Consensus 84 g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 84 GRNIDPKPCTPRGM 97 (105)
T ss_dssp TEEEBCCCSCCSSC
T ss_pred CEEEEEEEccCCCC
Confidence 99999999887643
No 100
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=127.05 Aligned_cols=74 Identities=12% Similarity=0.253 Sum_probs=67.1
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
.+.|||+|||+.+++++|. ++|++||+|.+|.|.+. +++|||+|.+.++|.+||+.|||..++||.
T Consensus 10 ~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQ---ETFSRFGSLGRVLLPEG-----------GITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCSS-----------SSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEeCC-----------CCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 5689999999999998876 69999999999988742 446999999999999999999999999999
Q ss_pred EEEeecCC
Q 003956 189 LRACFGTT 196 (784)
Q Consensus 189 LRASfGTT 196 (784)
|+|.|+..
T Consensus 76 l~V~~a~~ 83 (111)
T 1whx_A 76 LYLEWAPI 83 (111)
T ss_dssp CEEEEEET
T ss_pred EEEEECCC
Confidence 99999865
No 101
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3e-14 Score=118.08 Aligned_cols=74 Identities=22% Similarity=0.472 Sum_probs=66.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh-CCCccCC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV-HSYILDG 186 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aL-DG~~LdG 186 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.++ +++|||+|.+.++|.+||+.| +|..++|
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~---~~f~~~G~i~~~~~~~~-----------kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLR---NHFYQFGEIRTITVVQR-----------QQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHH---HHHHTTSCEEEEEEEGG-----------GTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CccEEEEcCCCCCCCHHHHH---HHHHhCCCEeEEEEECC-----------CCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 34689999999999998876 69999999999999863 357999999999999999999 9999999
Q ss_pred ceEEEeecC
Q 003956 187 RPLRACFGT 195 (784)
Q Consensus 187 RvLRASfGT 195 (784)
++|+|.|+.
T Consensus 77 ~~l~v~~ak 85 (85)
T 2ytc_A 77 RRLNVKWGR 85 (85)
T ss_dssp EECCEEECC
T ss_pred CEEEEEecC
Confidence 999999973
No 102
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.2e-14 Score=126.37 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=68.2
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC--ccC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY--ILD 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~--~Ld 185 (784)
....|||+|||+.+++++|. ++|++||+|.+|.|.+. +++|||+|.+.++|.+||+.|+|. .++
T Consensus 14 p~~~l~V~nLp~~~te~~L~---~~F~~fG~V~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLV---EALEKFGTICYVMMMPF-----------KRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHH---HHHTTTSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEECC-----------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 35689999999999988876 79999999999998753 357999999999999999999775 499
Q ss_pred CceEEEeecCCccc
Q 003956 186 GRPLRACFGTTKYC 199 (784)
Q Consensus 186 GRvLRASfGTTKYC 199 (784)
||+|+|.|+..|.-
T Consensus 80 Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 80 GQQAFFNYSTSKRI 93 (104)
T ss_dssp SSBCEEEECSSSSC
T ss_pred CEEEEEEEccCccc
Confidence 99999999987654
No 103
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.51 E-value=1.9e-14 Score=121.96 Aligned_cols=83 Identities=17% Similarity=0.413 Sum_probs=71.0
Q ss_pred ccCeEEEeCCCCCCChHHHHH-HHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 108 QRNLVYIIGLPINLADEDLLQ-RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR-~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
..+.|||+|||+.+++++|.+ -.++|++||+|..|.|.++ +. .+++|||+|.+.++|.+||+.|||..++|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~--~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS--LK------MRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH--HH------HTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC--CC------cCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 457899999999999998751 1369999999999998743 11 35689999999999999999999999999
Q ss_pred ceEEEeecCCcc
Q 003956 187 RPLRACFGTTKY 198 (784)
Q Consensus 187 RvLRASfGTTKY 198 (784)
+.|+|.|+..+.
T Consensus 79 ~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 KPMRIQYAKTDS 90 (97)
T ss_dssp EECEEEECSSCC
T ss_pred cEEEEEEccCCC
Confidence 999999988753
No 104
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.2e-14 Score=118.62 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=67.6
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|. +++|||+|.+.++|.+||+.|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~~~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIR---SLFEQYGKVLECDII-------------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp CEEEEEESCCSSCCHHHHH---HHHHTSSCEEEEEEE-------------TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CeEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEE-------------CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 4689999999999998876 699999999999987 137999999999999999999999999999
Q ss_pred EEEeecCCcc
Q 003956 189 LRACFGTTKY 198 (784)
Q Consensus 189 LRASfGTTKY 198 (784)
|+|.|+..+-
T Consensus 72 l~v~~a~~~~ 81 (90)
T 2dnq_A 72 INVEASKNKS 81 (90)
T ss_dssp CEEECSSCCC
T ss_pred EEEEECCCCC
Confidence 9999987764
No 105
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=123.40 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=69.0
Q ss_pred CeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 003956 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (784)
Q Consensus 110 NLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvL 189 (784)
+.|||+|||+.+++++|. ++|++||+|.+|.|.++ ++++|||+|.+.++|.+||+.|||..++|+.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELE---RAFSYYGPLRTVWIARN----------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHH---HHHHHHCCCSEEEEESS----------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeeC----------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 469999999999998876 69999999999999876 15589999999999999999999999999999
Q ss_pred EEeecCCcc
Q 003956 190 RACFGTTKY 198 (784)
Q Consensus 190 RASfGTTKY 198 (784)
+|.|+..+-
T Consensus 68 ~V~~a~~~~ 76 (101)
T 2hvz_A 68 RVELSTGMP 76 (101)
T ss_dssp EEEESSSCC
T ss_pred EEEEccCCC
Confidence 999987754
No 106
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.9e-14 Score=116.89 Aligned_cols=75 Identities=21% Similarity=0.379 Sum_probs=67.5
Q ss_pred eEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 003956 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (784)
Q Consensus 111 LVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvLR 190 (784)
.|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++++|||+|.+.++|.+||+.++ ..++||.|+
T Consensus 2 ~l~v~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~ 72 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLR---EYFGQFGEVKECLVMRDPLTK-----RSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTID 72 (77)
T ss_dssp CEEEESCCSSCCSHHHH---HHHTTTSCCCCEEEECCCCSS-----SCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCE
T ss_pred EEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEecCCCCC-----CcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEE
Confidence 58999999999999976 699999999999998876432 257899999999999999999999 999999999
Q ss_pred Eeec
Q 003956 191 ACFG 194 (784)
Q Consensus 191 ASfG 194 (784)
+.++
T Consensus 73 v~~a 76 (77)
T 1uaw_A 73 PKVA 76 (77)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9886
No 107
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.6e-14 Score=122.89 Aligned_cols=86 Identities=13% Similarity=0.272 Sum_probs=73.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEE-EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK-VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~K-IvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
....|||+|||+.+++++|. ++|.+||.|.+ |.|.++..+. ++++|||+|.+.++|.+||+. ||..++|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~v~~~v~i~~~~~g~------~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIV---QFFSGLEIVPNGMTLPVDFQGR------STGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHTTTCCEEEEEEECCBCSSSC------BCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCcceeEEEEECCCCC------cceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 46789999999999999886 79999999998 8887774432 478999999999999999998 9999999
Q ss_pred ceEEEeecCCccccccc
Q 003956 187 RPLRACFGTTKYCHAWI 203 (784)
Q Consensus 187 RvLRASfGTTKYCs~FL 203 (784)
|.|+|.+++.+.-..+.
T Consensus 84 r~i~v~~~~~~~~~~~~ 100 (104)
T 1wg5_A 84 RYIEIFKSSRAEVRTSG 100 (104)
T ss_dssp SCCEEEEECTTTSCCSS
T ss_pred cEEEEEECCHHHHHHhc
Confidence 99999998876544433
No 108
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.51 E-value=3.9e-14 Score=132.59 Aligned_cols=87 Identities=10% Similarity=0.283 Sum_probs=75.2
Q ss_pred CccccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 003956 103 NVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 182 (784)
Q Consensus 103 ~VRVIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~ 182 (784)
..+....+.|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||..|||.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~Ai~~l~g~ 137 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQ---EKFCDYGEIKNIHLNLDRRTG-----FSKGYALVEYETHKQALAAKEALNGA 137 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTS-----SEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHH---HHhhcCCCEEEEEEEecCCCC-----cEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3445667789999999999998876 699999999999999875432 24789999999999999999999999
Q ss_pred ccCCceEEEeecCCc
Q 003956 183 ILDGRPLRACFGTTK 197 (784)
Q Consensus 183 ~LdGRvLRASfGTTK 197 (784)
.|+|++|+|.|+..+
T Consensus 138 ~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 138 EIMGQTIQVDWCFVK 152 (165)
T ss_dssp EETTEECEEEESEEC
T ss_pred EECCEEEEEEEecCC
Confidence 999999999998765
No 109
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.9e-14 Score=118.19 Aligned_cols=79 Identities=18% Similarity=0.447 Sum_probs=71.0
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++| +|..|.|.++..+. ++++|||+|.+.++|.+||+ +||..++||
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~---~~F~~~-~i~~v~i~~~~~g~------~~g~afV~f~~~~~a~~A~~-~~g~~~~gr 77 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVM---EFLAPL-KPVAIRIVRNAHGN------KTGYIFVDFSNEEEVKQALK-CNREYMGGR 77 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHH---HHHTTS-CCSEEEEEECTTSC------EEEEEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred CccEEEEECCCCCCCHHHHH---HHHhhC-CceEEEEEECCCCC------CceEEEEEECCHHHHHHHHH-hCCceeCCc
Confidence 46789999999999999976 699999 99999999874432 47899999999999999999 999999999
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|+|.+++.+
T Consensus 78 ~i~v~~a~~~ 87 (91)
T 2dgw_A 78 YIEVFREKSG 87 (91)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEECCcC
Confidence 9999998765
No 110
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.50 E-value=2.5e-14 Score=123.52 Aligned_cols=80 Identities=16% Similarity=0.317 Sum_probs=69.3
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCC-CCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTAT-GDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~-g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
....|||+|||+.+++++|. ++|++|| |..|.|.+++. .+ ..+++|||+|.+.++|.+|| .|||..++|
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G-i~~v~i~~~~~~~g-----~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIK---EFFRGLN-ISAVRLPREPSNPE-----RLKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp --CEEEESCCSSCCSSSHHH---HHSCSSC-EEEEECSCCTTTTC-----CCCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcC-CeEEEEEecCCcCC-----ccCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 45789999999999999986 6999999 99999987762 22 24778999999999999999 999999999
Q ss_pred ceEEEeecCCc
Q 003956 187 RPLRACFGTTK 197 (784)
Q Consensus 187 RvLRASfGTTK 197 (784)
|.|+|.|+..+
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999998764
No 111
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.50 E-value=8.7e-14 Score=129.08 Aligned_cols=116 Identities=16% Similarity=0.260 Sum_probs=86.0
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||+. +|..++|+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLR---SHFEQWGTLTDCVVMRDPNTK-----RSRGFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEEcCCCC-----CccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 45689999999999998876 799999999999999876532 2478999999999999999987 99999999
Q ss_pred eEEEeecCCccccccccCcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 188 PLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 188 vLRASfGTTKYCs~FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
.|++.++..+--.. +........++|+.-+. ...|.+||......
T Consensus 83 ~l~v~~~~~~~~~~--~~~~~~~~~~l~V~nLp---~~~t~~~l~~~F~~ 127 (196)
T 1l3k_A 83 VVEPKRAVSREDSQ--RPGAHLTVKKIFVGGIK---EDTEEHHLRDYFEQ 127 (196)
T ss_dssp ECEEEECCC-------------CCSEEEEECCT---TTCCHHHHHHHHTT
T ss_pred EeeeecccCccccc--ccccCCCcceEEEeCCC---CCCCHHHHHHHHhc
Confidence 99999986643211 11111122345554443 45899999877655
No 112
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.8e-14 Score=122.75 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=69.0
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC-
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG- 186 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG- 186 (784)
....|||+|||+.+++++|. ++|.+||+|..|.|.++ ++|||+|.+.++|.+||+.|||..|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~i~~~------------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLK---DHMREAGDVCYADVYRD------------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHH---HHHGGGSCEEEEEEETT------------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEecC------------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 35789999999999998876 79999999999999754 379999999999999999999999999
Q ss_pred ----ceEEEeecCCcc
Q 003956 187 ----RPLRACFGTTKY 198 (784)
Q Consensus 187 ----RvLRASfGTTKY 198 (784)
+.|+|.++..+-
T Consensus 79 ~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 79 EGETAYIRVKVDGPRS 94 (108)
T ss_dssp TSCEEEEEEEESSCCS
T ss_pred cCcceEEEEEeCCCCC
Confidence 999999988753
No 113
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4e-14 Score=121.07 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=67.1
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||.|. +.|.... .+++|||+|.+.++|.+||+.|||..++|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~---~~F~~~G~v~-~~~~~~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLK---RALRELGSVP-LRLTWQG---------PRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHH---HHHHHTTCCC-SEEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCCcCcHHHHH---HHHHhcCCEE-EEEEcCC---------CCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 35789999999999998876 6999999996 5555431 366899999999999999999999999999
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|+|.|+..+
T Consensus 85 ~l~V~~a~~~ 94 (97)
T 2e5j_A 85 TLRVALARQQ 94 (97)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999998765
No 114
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.8e-14 Score=129.48 Aligned_cols=77 Identities=21% Similarity=0.344 Sum_probs=68.4
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC--CccCC
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS--YILDG 186 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG--~~LdG 186 (784)
...|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||+.++| ..++|
T Consensus 31 s~~LfVgNLp~~vte~dL~---~lF~~fG~V~~v~i~~~-----------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVI---SLGLPFGKVTNLLMLKG-----------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHTTTSCCCEEEEEGG-----------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 4679999999999998876 79999999999999864 34799999999999999999984 68999
Q ss_pred ceEEEeecCCccc
Q 003956 187 RPLRACFGTTKYC 199 (784)
Q Consensus 187 RvLRASfGTTKYC 199 (784)
|+|+|.|+..|--
T Consensus 97 r~l~V~~a~~k~~ 109 (119)
T 2ad9_A 97 QPIYIQFSNHKEL 109 (119)
T ss_dssp BCCEEEECSSSSC
T ss_pred eEEEEEEccCCCC
Confidence 9999999977644
No 115
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=5.3e-14 Score=121.52 Aligned_cols=75 Identities=19% Similarity=0.411 Sum_probs=67.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
+...|||+|||+.+++++|. ++|++||+|..|.|.+ ++|||+|.+.++|.+||+.|||..++|+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~v~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILE---KAFSQFGKLERVKKLK-------------DYAFIHFDERDGAVKAMEEMNGKDLEGE 73 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHH---HHHHHHSCEEEEEECS-------------SCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEC-------------CEEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence 45789999999999998876 6999999999998872 2699999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+-
T Consensus 74 ~l~v~~a~~~~ 84 (103)
T 2dgu_A 74 NIEIVFAKPPD 84 (103)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEcCCCc
Confidence 99999987754
No 116
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.49 E-value=6.9e-14 Score=123.21 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=70.1
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||+.+ |..++||.
T Consensus 25 ~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~tg-----~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~ 95 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLR---EYFGQFGEVKECLVMRDPLTK-----RSRGFGFVTFMDQAGVDKVLAQS-RHELDSKT 95 (109)
T ss_dssp -CCEEEESCCTTCCHHHHH---HHHTTTSCEEEEEECCCTTTC-----CCTTCEEEEESSHHHHHHHHHSS-CEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHccCCeEEEEEEECCCCC-----CcCcEEEEEECCHHHHHHHHHHC-CCcCCCEE
Confidence 4679999999999999876 699999999999998876532 24778999999999999999986 59999999
Q ss_pred EEEeecCCc
Q 003956 189 LRACFGTTK 197 (784)
Q Consensus 189 LRASfGTTK 197 (784)
|+|.++..+
T Consensus 96 l~V~~a~~~ 104 (109)
T 2rs2_A 96 IDPKVAFPR 104 (109)
T ss_dssp EEEEECCCC
T ss_pred EEEEEccCC
Confidence 999998765
No 117
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=7.8e-14 Score=119.55 Aligned_cols=79 Identities=16% Similarity=0.320 Sum_probs=67.5
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+| .|.++..+. .+++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~v---~~~~~~~g~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQ---EVFEKATFI---KVPQNQNGK------SKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHCSSCSEE---ECCBCSSSC------BCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCEE---EEEECCCCC------EeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 46789999999999998876 699999988 344443322 467899999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+.
T Consensus 82 ~l~v~~a~~~~ 92 (101)
T 2fc9_A 82 AIRLELQGPRG 92 (101)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEEcCCCC
Confidence 99999988763
No 118
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.4e-14 Score=126.58 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=72.2
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCce-EEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKV-LKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI-~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
+...|||+|||+.+++++|. ++|++||.| ..|.|.+++.+. .+++|||+|.+.++|.+||+. ||..|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~v~~~v~i~~d~~g~------~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVL---QFLEGIPVDENAVHVLVDNNGQ------GLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHH---HHTTTSCCCSTTEEECCCTTSS------CSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CccEEEEeCcCCcCCHHHHH---HHHHhCCCcCCeEEEEECCCCC------cceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 46789999999999999976 799999999 889888777432 477899999999999999998 9999999
Q ss_pred ceEEEeecCCccc
Q 003956 187 RPLRACFGTTKYC 199 (784)
Q Consensus 187 RvLRASfGTTKYC 199 (784)
|.|+|.+++.+--
T Consensus 84 r~i~v~~a~~~~~ 96 (114)
T 2cpy_A 84 REAFVHVVTLEDM 96 (114)
T ss_dssp EEEEEEEECHHHH
T ss_pred eEEEEEECCHHHH
Confidence 9999999876644
No 119
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.49 E-value=9.7e-15 Score=125.06 Aligned_cols=68 Identities=37% Similarity=0.940 Sum_probs=60.3
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchhccccChHHH
Q 003956 3 DKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGMAANCERA 75 (784)
Q Consensus 3 De~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~~~~~~~eel 75 (784)
.+++..||+|+|+|+++|..|+||+||+++|++||+++.+ ..+++||.||++|....+.|+.++.|++
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~-----~~~~~CP~CR~~~~~~~~~~~~~~~~~~ 75 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT-----DENGLCPACRKPYPEDPAVYKPLSQEEL 75 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT-----SSCSBCTTTCCBCSSCSSCCCSCCCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh-----cCCCCCCCCCCccCCCchhhccCCHHHH
Confidence 3567899999999999999999999999999999999963 3578999999999999999888877654
No 120
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.1e-14 Score=118.16 Aligned_cols=74 Identities=14% Similarity=0.329 Sum_probs=67.3
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.++ +|||+|.+.++|.+||+.|||..++|+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~~~~~~~-------------~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELR---SLFERRGRVIECDVVKD-------------YAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHH---HHHHHHSCEEEEEECSS-------------CEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHcCCCEEEEEEECC-------------EEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 35679999999999998876 69999999999998732 599999999999999999999999999
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|+|.|+..+
T Consensus 72 ~l~v~~a~~~ 81 (90)
T 2dnp_A 72 RINVELSTKG 81 (90)
T ss_dssp ECEEEESCCC
T ss_pred EEEEEECCCC
Confidence 9999998765
No 121
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.6e-14 Score=120.25 Aligned_cols=76 Identities=20% Similarity=0.416 Sum_probs=68.3
Q ss_pred ccCeEEEeCCCC-CCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 108 QRNLVYIIGLPI-NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 108 QRNLVYV~GLP~-~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
....|||+|||+ .+++++|. ++|++||+|..|.|. +++|||+|.+.++|.+||+.|||..++|
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~---~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLF---RIFSPYGHIMQINIK-------------NAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHH---HHHTTTCCCCEEEEE-------------TTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCEEEEeCCCcccCCHHHHH---HHHHhcCCEEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 457899999999 99998876 699999999999984 3479999999999999999999999999
Q ss_pred ceEEEeecCCccc
Q 003956 187 RPLRACFGTTKYC 199 (784)
Q Consensus 187 RvLRASfGTTKYC 199 (784)
+.|+|.|+..+.-
T Consensus 73 ~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 73 KKLILEVSSSNAR 85 (96)
T ss_dssp TTBCEEEEECCCC
T ss_pred cEEEEEEcCcCCC
Confidence 9999999877644
No 122
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1e-13 Score=119.19 Aligned_cols=80 Identities=20% Similarity=0.475 Sum_probs=70.1
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+ +|..++|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~--~~~~~~g~ 83 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLK---EYFSTFGEVLMVQVKKDLKTG-----HSKGFGFVRFTEYETQVKVMS--QRHMIDGR 83 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHH---HHHGGGSCEEEEEEEECSSSC-----SEEEEEEEEESSHHHHHHHHH--SCEEETTE
T ss_pred CCCEEEEEcCCCcCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----CccceEEEEECCHHHHHHHHH--cCCeeCCe
Confidence 35679999999999999876 699999999999998876532 247899999999999999999 57899999
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|+|.|+..|
T Consensus 84 ~l~v~~a~~~ 93 (103)
T 2cqg_A 84 WCDCKLPNSK 93 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEEecCCC
Confidence 9999998876
No 123
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=7.5e-14 Score=123.30 Aligned_cols=74 Identities=19% Similarity=0.507 Sum_probs=67.6
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
..+.|||+|||+.+++++|. ++|++||+|.+|.|. +++|||+|.+.++|.+||+.|||..++|+
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~-------------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELN---EIFGPFGPMKEVKIL-------------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHH---HHHTTTSCCCEEEEE-------------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEE-------------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 35789999999999998876 699999999999987 23799999999999999999999999999
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|+|.|+..+
T Consensus 94 ~l~V~~a~~~ 103 (108)
T 2jvo_A 94 PLEVVYSKLP 103 (108)
T ss_dssp ECEEESCSCC
T ss_pred EEEEEEecCC
Confidence 9999998765
No 124
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.48 E-value=1.5e-13 Score=148.95 Aligned_cols=90 Identities=13% Similarity=0.240 Sum_probs=76.9
Q ss_pred CCccccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 003956 102 TNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS 181 (784)
Q Consensus 102 a~VRVIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG 181 (784)
..+...+.+.|||+|||+.+++++|. ++|++||+|..|.|..+..+. ...++|||+|.+.++|.+||+.|||
T Consensus 95 ~~~~~~~~~~lfV~nL~~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~kG~aFV~F~~~e~A~~Ai~~lng 166 (437)
T 3pgw_S 95 PNAQGDAFKTLFVARVNYDTTESKLR---REFEVYGPIKRIHMVYSKRSG-----KPRGYAFIEYEHERDMHSAYKHADG 166 (437)
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHH---HHHHHcCCeeEEEeeccCCCC-----CccceEEEeeccHHHHHHHHHHcCC
Confidence 33444556799999999999988876 799999999999998775432 2477899999999999999999999
Q ss_pred CccCCceEEEeecCCccc
Q 003956 182 YILDGRPLRACFGTTKYC 199 (784)
Q Consensus 182 ~~LdGRvLRASfGTTKYC 199 (784)
..|+|+.|+|.|+..+-.
T Consensus 167 ~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 167 KKIDGRRVLVDVERGRTV 184 (437)
T ss_pred CEECCEEEEEEEeCCCCC
Confidence 999999999999887644
No 125
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.48 E-value=3e-14 Score=128.71 Aligned_cols=83 Identities=14% Similarity=0.246 Sum_probs=72.4
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEE--EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC---
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK--VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY--- 182 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~K--IvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~--- 182 (784)
..+.|||+|||+.+++++|. ++|++||+|.. |.|.+++..+ ..+|+|||+|.+. +|.+||+.|||.
T Consensus 22 ~~~~lfV~nL~~~~te~~L~---~~F~~~G~v~~~~v~i~~d~~tg-----~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSIL---GALAPYAVLSSSNVRVIKDKQTQ-----LNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHH---HHHGGGCCCCTTTEECCBCSSSS-----SBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCcceeeEEEEEcCCCC-----CcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 45789999999999998876 79999999966 8888877432 2478899999999 999999999999
Q ss_pred -ccCCceEEEeecCCccc
Q 003956 183 -ILDGRPLRACFGTTKYC 199 (784)
Q Consensus 183 -~LdGRvLRASfGTTKYC 199 (784)
.++||.|+|.|+..+.-
T Consensus 93 ~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CCGGGCCCCCEECCCSCC
T ss_pred ccCCCEEEEEEECCCCCC
Confidence 99999999999987644
No 126
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-13 Score=117.95 Aligned_cols=76 Identities=18% Similarity=0.405 Sum_probs=67.9
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccC--CceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQY--GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQY--GKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
....|||+|||+.+++++|. ++|++| |+|..|.+. +++|||+|.+.++|.+||+.|||..++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~g~v~~~~~~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIE---KEFNNIKPGAVERVKKI-------------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHHTTSTTCEEEEEEC-------------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CcCEEEEeCCCCCCCHHHHH---HHHHhcCCcceEEEEEe-------------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 45789999999999998876 699999 999998764 337999999999999999999999999
Q ss_pred CceEEEeecCCccc
Q 003956 186 GRPLRACFGTTKYC 199 (784)
Q Consensus 186 GRvLRASfGTTKYC 199 (784)
|+.|+|.|+..+.-
T Consensus 78 g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 78 GSPIEVTLAKPVDK 91 (99)
T ss_dssp TEEEEEECCCCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999987643
No 127
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.47 E-value=8.1e-14 Score=127.77 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=71.0
Q ss_pred ccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
......|||+|||+.+++++|. ++|++||+|..|.|.++ ++++|||+|.+.++|.+||+.|||..++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELE---RAFGYYGPLRSVWVARN----------PPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHH---HHHHHHSCEEEEEECSS----------SCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhhCCEEEEEEeeC----------CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3456789999999999998876 79999999999999865 2568999999999999999999999999
Q ss_pred CceEEEeecCCc
Q 003956 186 GRPLRACFGTTK 197 (784)
Q Consensus 186 GRvLRASfGTTK 197 (784)
||.|+|.|+..+
T Consensus 137 g~~l~v~~a~~~ 148 (150)
T 2i2y_A 137 GCRVRVELSNGE 148 (150)
T ss_dssp SSCCEEEECCCC
T ss_pred CeEEEEEEcCCC
Confidence 999999998765
No 128
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=5.2e-14 Score=126.89 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=67.7
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCC-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYG-KI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
...|||+|||+.+++++|. ++|++|| +|..|.|.... ++++|||+|.+.++|.+||+.|||..++||
T Consensus 28 ~~~l~VgnLp~~~te~dL~---~~F~~~G~~v~~v~i~~~~---------~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLK---DLARENSLETTFSSVNTRD---------FDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp CEEEEEECSSCCCCHHHHH---HHHHHHTCCCSEEECSSCS---------SSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCEEEEECCCCCCCHHHHH---HHHHHhCCeeEEEEEEcCC---------CCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 5689999999999998875 7999999 99999886321 356899999999999999999999999999
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|+|.+++.+
T Consensus 96 ~i~V~~a~~~ 105 (111)
T 2jvr_A 96 VITVERDDNP 105 (111)
T ss_dssp EEEEEESCC-
T ss_pred EEEEEECCCC
Confidence 9999998653
No 129
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.47 E-value=4.5e-14 Score=129.42 Aligned_cols=86 Identities=21% Similarity=0.318 Sum_probs=74.8
Q ss_pred cccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 105 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 105 RVIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
.......|||+|||+.+++++|. ++|++||+|..|.|.+++... ..+++|||+|.+.++|.+||+.|||..+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~~g-----~~~G~afV~F~~~~~A~~Ai~~l~g~~i 114 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLR---RVFEKYGRVGDVYIPRDRYTK-----ESRGFAFVRFHDKRDAEDAMDAMDGAVL 114 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHH---HHHGGGSCCSEEECCCCSSSS-----SCCSCCEEECSCHHHHHHHHTTTTTCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34556789999999999988876 699999999999998776432 2477899999999999999999999999
Q ss_pred CCceEEEeecCCcc
Q 003956 185 DGRPLRACFGTTKY 198 (784)
Q Consensus 185 dGRvLRASfGTTKY 198 (784)
+|+.|+|.|+..+.
T Consensus 115 ~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 115 DGRELRVQMARYGR 128 (135)
T ss_dssp SSSCCEEEECCCCC
T ss_pred CCEEEEEEECCCCC
Confidence 99999999987653
No 130
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.6e-14 Score=119.30 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=65.3
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCc-eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC-CccC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGK-VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS-YILD 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGK-I~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG-~~Ld 185 (784)
....|||+|||+.+++++|. ++|++||. |..+.|. .+++|||+|.+.++|.+||+.||| ..++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~vv~~~~~~------------~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLR---QLFGDRKLPLAGQVLL------------KSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHH---HHHHHTTCCCSSCEEE------------ETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHcCCceEEEEEc------------CCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 34689999999999998876 69999999 4444442 145799999999999999999999 9999
Q ss_pred CceEEEeecCCcc
Q 003956 186 GRPLRACFGTTKY 198 (784)
Q Consensus 186 GRvLRASfGTTKY 198 (784)
|+.|+|.|+..+-
T Consensus 72 g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 72 GKIMEVDYSVSKK 84 (93)
T ss_dssp TEECEEEECCCCC
T ss_pred CEEEEEEEccCcc
Confidence 9999999987763
No 131
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=2.4e-14 Score=116.09 Aligned_cols=75 Identities=16% Similarity=0.340 Sum_probs=66.1
Q ss_pred eEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 003956 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (784)
Q Consensus 111 LVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvLR 190 (784)
+|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++++|||+|.+.++|.+||+. +|..++|+.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIR---EYFGGFGEVESIELPMDNKTN-----KRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHH---HHHHHHSCCSEECCCCSCCCS-----SSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----CcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 48999999999998876 699999999999998776532 2477899999999999999996 99999999999
Q ss_pred Eeec
Q 003956 191 ACFG 194 (784)
Q Consensus 191 ASfG 194 (784)
+.++
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9875
No 132
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=6.6e-14 Score=125.18 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=69.9
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCc---eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGK---VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGK---I~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
....|||+|||+.+++++|. ++|++||. |..|.|.+++.+. .+++|||+|.+.++|.+||+ +||..|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~~~~v~~v~i~~~~~g~------~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQ---NFLSDCTIHDGVAGVHFIYTREGR------QSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHTTTSCBTTGGGGEEEEECSSSC------EEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHcCCccCceeEEEEECCCCC------CCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 45679999999999999976 69999999 8999998877643 47899999999999999999 999999
Q ss_pred CCceEEEeecC
Q 003956 185 DGRPLRACFGT 195 (784)
Q Consensus 185 dGRvLRASfGT 195 (784)
+||.|+|.+++
T Consensus 86 ~gr~i~V~~a~ 96 (118)
T 2db1_A 86 GHRYIEVFKSH 96 (118)
T ss_dssp TTEEEEEEEEC
T ss_pred CCeEEEEEECC
Confidence 99999998764
No 133
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1e-13 Score=121.04 Aligned_cols=79 Identities=23% Similarity=0.429 Sum_probs=67.6
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceE----EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL----KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~----KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~ 183 (784)
..+.|||+|||+.+++++|. ++|++||.|. .+.+. .+ ..+++|||+|.+.++|.+||+.|||..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~---~~f~~~G~v~~~~~~~~~~---~g------~~~g~afV~f~~~~~a~~Ai~~l~g~~ 91 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLV---SLFARFQEKKGPPIQFRMM---TG------RMRGQAFITFPNKEIAWQALHLVNGYK 91 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHH---HHTHHHHHSSSSCCEEEEE---CS------SSCSEEEEECSSHHHHHHHHHHSTTCB
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCccceEEEEEcC---CC------ccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 35789999999999999886 6999999994 44443 22 146789999999999999999999999
Q ss_pred cCCceEEEeecCCcc
Q 003956 184 LDGRPLRACFGTTKY 198 (784)
Q Consensus 184 LdGRvLRASfGTTKY 198 (784)
++|+.|+|.|+..+-
T Consensus 92 ~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 92 LYGKILVIEFGKNKK 106 (115)
T ss_dssp CSSCBCEEEECCCCS
T ss_pred eCCcEEEEEEccCCC
Confidence 999999999998764
No 134
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=2.2e-13 Score=127.28 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=67.0
Q ss_pred eEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC--ce
Q 003956 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG--RP 188 (784)
Q Consensus 111 LVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG--Rv 188 (784)
+|||+||++.+++++|. ++|++||+|.+|+|.++. +++.|||+|.+.++|.+||++|||..++| +.
T Consensus 30 ~I~V~NL~~~vte~~L~---~lFs~yG~V~~V~i~~~~---------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLH---QIFSKFGTVLKIITFTKN---------NQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp EEEEESCCSCCCHHHHH---HHHTTSSCEEEEEEEEET---------TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred EEEECCCCCCCCHHHHH---HHHhCcCCEEEEEEEcCC---------CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 58999999999988765 799999999999987532 23459999999999999999999999998 99
Q ss_pred EEEeecCCcc
Q 003956 189 LRACFGTTKY 198 (784)
Q Consensus 189 LRASfGTTKY 198 (784)
||+.|+..+.
T Consensus 98 LrI~~ak~~~ 107 (130)
T 3zzy_A 98 LRIDFSKLTS 107 (130)
T ss_dssp EEEEECSCSS
T ss_pred EEEEecCCCc
Confidence 9999998764
No 135
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=7.9e-14 Score=126.82 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=68.0
Q ss_pred ccCeEEEeCCCCC-CChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC--Ccc
Q 003956 108 QRNLVYIIGLPIN-LADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS--YIL 184 (784)
Q Consensus 108 QRNLVYV~GLP~~-IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG--~~L 184 (784)
....|||+|||+. +++++|. ++|.+||+|.+|.|.+. +++|||+|.+.++|.+||+.|+| ..+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~---~lF~~fG~V~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVL---KLAEPYGKIKNYILMRM-----------KSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHH---TTTTTTSCCSEEEEETT-----------TTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCEEEEeCCCCccCCHHHHH---HHHHhcCCEEEEEEecC-----------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3568999999998 9998876 79999999999999742 45899999999999999999865 569
Q ss_pred CCceEEEeecCCccc
Q 003956 185 DGRPLRACFGTTKYC 199 (784)
Q Consensus 185 dGRvLRASfGTTKYC 199 (784)
+||+|+|.|+..|..
T Consensus 90 ~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 90 QGRCVKVDLSEKYKK 104 (112)
T ss_dssp SSSCCEEEEECSCSS
T ss_pred CCEEEEEEECccccc
Confidence 999999999977654
No 136
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=2.6e-13 Score=125.26 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=65.4
Q ss_pred eEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC--ce
Q 003956 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG--RP 188 (784)
Q Consensus 111 LVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG--Rv 188 (784)
.|||+||++.+++++|. ++|++||+|.+|+|.+. . ++.|||+|.+.++|.+||++|||..|+| +.
T Consensus 27 ~l~V~NL~~~vt~~~L~---~~Fs~yG~V~~v~i~~~-~---------Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLY---TVCNPVGKVQRIVIFKR-N---------GIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp EEEEESCCSCCCHHHHH---HHHTTTSCEEEEEEEES-S---------SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred EEEEcCcCCCCCHHHHH---HHHHhcCCEEEEEEEeC-C---------CCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 47999999999987765 79999999999999642 1 2259999999999999999999999988 69
Q ss_pred EEEeecCCcc
Q 003956 189 LRACFGTTKY 198 (784)
Q Consensus 189 LRASfGTTKY 198 (784)
|+|.|+..+.
T Consensus 94 l~V~~Ak~~~ 103 (124)
T 2e5i_A 94 LKIEYARPTR 103 (124)
T ss_dssp EEEECCSCSC
T ss_pred EEEEEecCCc
Confidence 9999997764
No 137
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2.2e-13 Score=122.25 Aligned_cols=80 Identities=21% Similarity=0.386 Sum_probs=71.4
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||.|..|.|.++...+ .++++|||+|.+.++|.+||+.|||..++||
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLR---NAFKDFPSYLSGHVMWDMQTG-----SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHH---HHHTTSTTEEEEEEEECTTTC-----CEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCceEEECCCCCCCCHHHHH---HHHhccCCeeEEEEEecCCCC-----CcceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 45689999999999998886 699999999999998875432 2478899999999999999999999999999
Q ss_pred eEEEeecC
Q 003956 188 PLRACFGT 195 (784)
Q Consensus 188 vLRASfGT 195 (784)
.|+|.|++
T Consensus 158 ~i~v~~a~ 165 (166)
T 3md3_A 158 PLRINWAA 165 (166)
T ss_dssp ECEEEESC
T ss_pred EEEEEecC
Confidence 99999975
No 138
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=4.6e-13 Score=132.46 Aligned_cols=85 Identities=18% Similarity=0.400 Sum_probs=72.5
Q ss_pred ccccCeEEEeCCCCCCChHHHHH-HHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQ-RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR-~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
.-..+.|||+|||+.+++++|.+ -.++|++||+|.+|.|.++. . .+++|||+|.+.++|.+||+.|||..+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~--~------~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL--K------MRGQAFVIFKEVSSATNALRSMQGFPF 77 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC--C------cceEEEEEECCHHHHHHHHHHhcCCee
Confidence 34578999999999999988632 24899999999999998632 1 467899999999999999999999999
Q ss_pred CCceEEEeecCCcc
Q 003956 185 DGRPLRACFGTTKY 198 (784)
Q Consensus 185 dGRvLRASfGTTKY 198 (784)
+||.|+|.|+..+.
T Consensus 78 ~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 78 YDKPMRIQYAKTDS 91 (282)
T ss_pred CCcEEEEEEeccCc
Confidence 99999999986543
No 139
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.45 E-value=2.5e-13 Score=127.84 Aligned_cols=81 Identities=22% Similarity=0.426 Sum_probs=73.0
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
.+.|||+|||..+++++|. ++|++||+|..|.|.++.... .++++|||+|.+.++|.+||+.|||..++||.
T Consensus 125 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g-----~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIK---SVFEAFGKIKSATLARDPTTG-----KHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp SCEEEEECCCTTCCHHHHH---HHHTTSSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred CcEEEEeCCCCcCCHHHHH---HHHhccCCeeEEEEEecCCCC-----CcCceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 4789999999999998876 799999999999999875432 24778999999999999999999999999999
Q ss_pred EEEeecCCc
Q 003956 189 LRACFGTTK 197 (784)
Q Consensus 189 LRASfGTTK 197 (784)
|+|.|+..+
T Consensus 197 i~V~~a~~~ 205 (216)
T 2qfj_A 197 LRVGKAVTP 205 (216)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 999999876
No 140
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.45 E-value=1.5e-13 Score=115.85 Aligned_cols=74 Identities=18% Similarity=0.311 Sum_probs=67.0
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
+..|||+|||+.+++++|. ++|++| +|..|.|. . .+++|||+|.+.++|.+||+.|||..++||+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~---~~F~~~-~v~~~~i~-----~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 69 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVH---DLLKDY-DLKYCYVD-----R------NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD 69 (88)
T ss_dssp CCCEEEESCCSSCCHHHHH---HHTCSS-CCCCEEEE-----G------GGTEEEECCSCHHHHHHHHHHHTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHhhC-CeEEEEEe-----C------CCcEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 4679999999999998876 799999 99999885 1 2568999999999999999999999999999
Q ss_pred EEEeecCCc
Q 003956 189 LRACFGTTK 197 (784)
Q Consensus 189 LRASfGTTK 197 (784)
|+|.|+.++
T Consensus 70 l~V~~a~~~ 78 (88)
T 1wg1_A 70 LIVQLQPTD 78 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999999876
No 141
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=4.2e-13 Score=121.72 Aligned_cols=107 Identities=18% Similarity=0.374 Sum_probs=86.1
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC---
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD--- 185 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld--- 185 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++. +..+++|||+|.+.++|.+||+.|||..+.
T Consensus 3 ~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 76 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLR---ELFEQYGAVYEINVLRDRSQNP---PQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM 76 (175)
T ss_dssp CEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEEECSSSS---CEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred ceEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEecCCCCC---CCcceEEEEEECCHHHHHHHHHHhcCcEEccCC
Confidence 3579999999999998876 6999999999999988776420 124788999999999999999999998876
Q ss_pred CceEEEeecCCcc------ccccccCcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 186 GRPLRACFGTTKY------CHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 186 GRvLRASfGTTKY------Cs~FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
++.+++.+...+. +..|++|.+ ...|++||.....+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~----------------~~~t~~~l~~~F~~ 118 (175)
T 3nmr_A 77 HHPIQMKPADSEKNNAVEDRKLFIGMIS----------------KKCTENDIRVMFSS 118 (175)
T ss_dssp SSCCEEEECGGGCCSCGGGSEEEEESCC----------------TTCCHHHHHHHHGG
T ss_pred ccceEEccccccccccCCCCeEEEcCCC----------------CcCCHHHHHHHHHh
Confidence 6889998875432 334666655 56899999887655
No 142
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.6e-13 Score=120.33 Aligned_cols=81 Identities=16% Similarity=0.308 Sum_probs=70.1
Q ss_pred ccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
-.....|||+|||+.++++||. ++|.+|| |++|.|.+++.+. ++++|||+|.+.++|.+||+ +||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~---~~F~~~G-~~~v~i~~d~~g~------~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIY---NFFSPLN-PMRVHIEIGPDGR------VTGEADVEFATHEDAVAAMA-KDKANMQ 80 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHH---HSSCSCC-CSEEEEEESSSSC------EEEEEEEECSSSHHHHHHHT-TSSCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHHcC-ceEEEEEECCCCC------EeeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 3456789999999999999876 7999999 5599998887442 47899999999999999995 7999999
Q ss_pred CceEEEeecCCc
Q 003956 186 GRPLRACFGTTK 197 (784)
Q Consensus 186 GRvLRASfGTTK 197 (784)
||.|+|..+++.
T Consensus 81 gr~i~V~~~~~~ 92 (102)
T 1wez_A 81 HRYVELFLNSTA 92 (102)
T ss_dssp SSCCEEEEECCC
T ss_pred CcEEEEEECCCC
Confidence 999999987654
No 143
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3e-13 Score=115.83 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=68.7
Q ss_pred cccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 105 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 105 RVIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
+......|||+|||+.+++++|. ++|++|+ +|.|.+++... ..+++|||+|.+.++|.+||+.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~---~~F~~~~---~~~~~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLK---ESFDGSV---RARIVTDRETG-----SSKGFGFVDFNSEEDAKAAKEAMEDGEI 79 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHH---HTSTTCS---EEEEEECSSSC-----SEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHH---HHhcCCe---EEEEEecCCCC-----CcCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 34467889999999999999876 7999986 45555554322 2477999999999999999999999999
Q ss_pred CCceEEEeecCCcc
Q 003956 185 DGRPLRACFGTTKY 198 (784)
Q Consensus 185 dGRvLRASfGTTKY 198 (784)
+|+.|+|.|+..+-
T Consensus 80 ~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 80 DGNKVTLDWAKPKG 93 (102)
T ss_dssp TTEECEEEECCCCC
T ss_pred CCeEEEEEEecCCC
Confidence 99999999998764
No 144
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=1e-13 Score=117.51 Aligned_cols=78 Identities=22% Similarity=0.343 Sum_probs=67.4
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||.|..| . ..+ ..+++|||+|.+.++|.+||+.|||..++||
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~---~~F~~~g~v~~~--~--~~~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 81 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELK---EVFEDALEIRLV--S--QDG------KSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHH---HHHCSEEEECCE--E--ETT------EEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHhhCCcEEEe--C--CCC------CcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 46789999999999999876 699999999776 2 222 1477899999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+.
T Consensus 82 ~l~v~~a~~~~ 92 (96)
T 1fjc_A 82 SVSLYYTGEKG 92 (96)
T ss_dssp EEEEEECSSSC
T ss_pred EEEEEEcCCCC
Confidence 99999987653
No 145
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.3e-13 Score=123.28 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=67.7
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEe-ecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSIS-RTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvIn-rdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
....|||+|||+.+++++|. ++|.+||.|..+++. ....+. .+++|||+|.+.++|.+||+ +||..|+|
T Consensus 24 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~v~~~~~~~~~~~g~------~~G~afV~F~~~~~a~~Al~-~~g~~~~g 93 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVI---DFFKKLDIVEDSIYIAYGPNGK------ATGEGFVEFRNEADYKAALC-RHKQYMGN 93 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHH---HHSCSSCBCTTTCEEEECTTSS------EEEEEEEEBSSSHHHHHHHT-SCSBCSTT
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCccceEEEEECCCCC------CCeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 45789999999999999886 699999999984443 333332 47899999999999999999 99999999
Q ss_pred ceEEEeecCCc
Q 003956 187 RPLRACFGTTK 197 (784)
Q Consensus 187 RvLRASfGTTK 197 (784)
|.|+|.+++.+
T Consensus 94 r~i~V~~a~~~ 104 (124)
T 1wel_A 94 RFIQVHPITKK 104 (124)
T ss_dssp SCBEEEEECHH
T ss_pred cEEEEEECCHH
Confidence 99999987653
No 146
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.4e-13 Score=115.30 Aligned_cols=75 Identities=16% Similarity=0.413 Sum_probs=66.0
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
..+.|||+|| .+++++|. ++|.+||+|..|.|.+ .+++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~---~~F~~~G~i~~v~i~~-----------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLR---GAFSPFGNIIDLSMDP-----------PRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCSEEEEECS--SCCHHHHH---HHHTTTSCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCEEEEcCC--CCCHHHHH---HHHhhCCCEEEEEecC-----------CCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4578999996 78888876 7999999999999841 256899999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+-
T Consensus 78 ~l~v~~a~~~~ 88 (97)
T 1x5p_A 78 QLKVNIARKQP 88 (97)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCC
Confidence 99999987753
No 147
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=128.39 Aligned_cols=76 Identities=18% Similarity=0.358 Sum_probs=68.6
Q ss_pred cCeEEEeCCCC-CCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 109 RNLVYIIGLPI-NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 109 RNLVYV~GLP~-~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
.+.|||+|||+ .+++++|. ++|++||+|.+|.|.+++ +++|||+|.+.++|.+||+.|||..++|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~---~~F~~~G~i~~v~i~~~~----------~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLF---ILFGVYGDVQRVKILFNK----------KENALVQMADGNQAQLAMSHLNGHKLHGK 69 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHH---HHHHTTCCCSEEECSTTC----------SSCCEEECTTTHHHHHHHHHHTTCCCSSC
T ss_pred CcEEEEeCCCcccCCHHHHH---HHHHhcCCEEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCeecCe
Confidence 57899999999 99988876 799999999999998654 34699999999999999999999999999
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|++.|+..+
T Consensus 70 ~l~v~~a~~~ 79 (198)
T 1qm9_A 70 PIRITLSKHQ 79 (198)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEecCC
Confidence 9999998754
No 148
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.44 E-value=1.9e-13 Score=131.12 Aligned_cols=85 Identities=19% Similarity=0.391 Sum_probs=75.4
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||+|..|.|.++..+. .+++|||+|.+.++|.+||+.|||..|+|+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~g~------~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr 157 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQ---ELFAEFGTLKKAAVDYDRSGR------SLGTADVHFERRADALKAMKQYKGVPLDGR 157 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHH---HHHHHTSCCSEEEECCCTTSS------CSCCEEEEESCHHHHHHHHHHSTTCBCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCCC------EeeEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 45799999999999999876 799999999999998876432 467899999999999999999999999999
Q ss_pred eEEEeecCCccccc
Q 003956 188 PLRACFGTTKYCHA 201 (784)
Q Consensus 188 vLRASfGTTKYCs~ 201 (784)
+|+|.|++.+....
T Consensus 158 ~l~V~~a~~~~~~~ 171 (177)
T 2f3j_A 158 PMDIQLVASQIDLE 171 (177)
T ss_dssp BCEEEEESSGGGGC
T ss_pred EEEEEEecCCCCCC
Confidence 99999998876544
No 149
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.44 E-value=6.6e-14 Score=122.50 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=71.0
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCc---eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGK---VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGK---I~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
....|||+|||+.+++++|. ++|++||. |..|.|.+++.+. .+|+|||+|.+.++|.+||+ +||..+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~---~~F~~~g~~~~v~~v~i~~~~~g~------~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVL---NFFSDCRIRNGENGIHFLLNRDGK------RRGDALIEMESEQDVQKALE-KHRMYM 79 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHH---HHTTTSCBTTTTTTEECCCCTTST------TCSEEEEEBSSHHHHHHHHT-TTTCCS
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHhcCCcCCcceEEEEECCCCC------EeeEEEEEECCHHHHHHHHH-hCccee
Confidence 45789999999999999986 69999988 8999998877643 47899999999999999999 999999
Q ss_pred CCceEEEeecCCc
Q 003956 185 DGRPLRACFGTTK 197 (784)
Q Consensus 185 dGRvLRASfGTTK 197 (784)
+||.|+|.+++.+
T Consensus 80 ~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 80 GQRYVEVYEINNE 92 (107)
T ss_dssp SSSCCCCEECCHH
T ss_pred CCeEEEEEECCHH
Confidence 9999999987654
No 150
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.44 E-value=9.9e-14 Score=137.91 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=73.2
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCC--ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYG--KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYG--KI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
.+..|||+||++.+++++|. ++|.+|| +|.+|.|.+++... ..+++|||+|.+.++|.+||+.|||..|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~---~~F~~~G~~~v~~v~i~~d~~tg-----~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLT---EAVHSLGVNDILEIKFFENRANG-----QSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHH---HHHHTTTCCCEEEEEEEECTTTC-----CEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHHHCCcceEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 46789999999999998876 7999999 99999999886433 24789999999999999999999999999
Q ss_pred CceEEEeecCCccc
Q 003956 186 GRPLRACFGTTKYC 199 (784)
Q Consensus 186 GRvLRASfGTTKYC 199 (784)
||.|+|.|+..+..
T Consensus 139 Gr~l~V~~a~~~~~ 152 (229)
T 3q2s_C 139 GQNPVVTPVNKQFL 152 (229)
T ss_dssp TBCCEEEECCHHHH
T ss_pred CEEeEEEECCCCcc
Confidence 99999999876543
No 151
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.44 E-value=2.5e-13 Score=131.50 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=67.3
Q ss_pred CeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC--c
Q 003956 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG--R 187 (784)
Q Consensus 110 NLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG--R 187 (784)
.+|||+||++.+++++|. ++|++||+|.+|+|.... ++++|||+|.+.++|.+||+.|||..|.| +
T Consensus 47 l~l~VgNL~~~vted~L~---~~Fs~fG~V~~V~i~~k~---------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~ 114 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLH---QIFSKFGTVLKIITFTKN---------NQFQALLQYADPVSAQHAKLSLDGQNIYNACC 114 (164)
T ss_dssp EEEEECSCCSCCCHHHHH---HHHHHHSCEEEEEEEESS---------SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred EEEEEeCcCCCCCHHHHH---HHHHhcCCEEEEEEEeCC---------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence 358999999999988865 799999999999996432 36789999999999999999999999965 9
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|||.|+..+
T Consensus 115 ~L~V~~Ak~~ 124 (164)
T 1sjr_A 115 TLRIDFSKLT 124 (164)
T ss_dssp CEEEEECSSS
T ss_pred EEEEEEecCC
Confidence 9999998776
No 152
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.44 E-value=1.1e-13 Score=128.78 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=71.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCc---eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGK---VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGK---I~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
+...|||+|||+.+++++|. ++|++||. |..|.|.+++.+. ++++|||+|.+.++|.+||+ +||..|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~---~~F~~~G~v~~v~~v~i~~d~~g~------srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQ---NFLSDCTIHDGAAGVHFIYTREGR------QSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHH---HHTTTCCCSSSSTTEEEEECSSSC------EEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCcCceeEEEEEECCCCC------CCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 45789999999999999986 79999999 8899998887643 47899999999999999999 999999
Q ss_pred CCceEEEeecCCc
Q 003956 185 DGRPLRACFGTTK 197 (784)
Q Consensus 185 dGRvLRASfGTTK 197 (784)
+||.|+|.+++.+
T Consensus 113 ~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 113 GHRYIEVFKSHRT 125 (136)
T ss_dssp SSSEEEEEECCHH
T ss_pred CCEEEEEEECChH
Confidence 9999999988654
No 153
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.43 E-value=1.5e-13 Score=120.02 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=65.6
Q ss_pred cCeEEEeCCCCC-CChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 109 RNLVYIIGLPIN-LADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 109 RNLVYV~GLP~~-IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
...|||+|||+. +++++|. ++|++||+|..|.|. +++|||+|.+.++|.+||+.|||..++|+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~---~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVE---TIFSKYGRVAGCSVH-------------KGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHH---HHHGGGSCCSEEEEE-------------TTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred CcEEEEeCCCcccCCHHHHH---HHHHhCCCeEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 368999999999 9988876 699999999999982 34799999999999999999999999999
Q ss_pred eEEEeecCC
Q 003956 188 PLRACFGTT 196 (784)
Q Consensus 188 vLRASfGTT 196 (784)
.|+|.|+..
T Consensus 91 ~l~V~~a~~ 99 (110)
T 1wf1_A 91 TLDINMAGE 99 (110)
T ss_dssp ECCEEESCC
T ss_pred EEEEEECCC
Confidence 999999864
No 154
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=3.9e-13 Score=130.86 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=70.4
Q ss_pred ccccCeEEEeCCCC-CCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 106 VIQRNLVYIIGLPI-NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 106 VIQRNLVYV~GLP~-~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
--..+.|||+|||+ .+++++|. ++|++||+|.+|.|.+++ +++|||+|.+.++|.+||+.|||..+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~---~~F~~~G~i~~v~i~~~~----------~g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLF---ILFGVYGDVQRVKILFNK----------KENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHH---HHHHHHTCEEEEEECCTT----------SCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHH---HHHHhCCCeEEEEEEECC----------CCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 34567899999999 89988876 799999999999998764 34699999999999999999999999
Q ss_pred CCceEEEeecCCc
Q 003956 185 DGRPLRACFGTTK 197 (784)
Q Consensus 185 dGRvLRASfGTTK 197 (784)
+|+.|+|.|+..+
T Consensus 98 ~g~~l~v~~a~~~ 110 (229)
T 2adc_A 98 HGKPIRITLSKHQ 110 (229)
T ss_dssp SSSBCEEECCSCC
T ss_pred CCeEEEEEEecCc
Confidence 9999999998754
No 155
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.43 E-value=2.2e-13 Score=123.87 Aligned_cols=79 Identities=15% Similarity=0.269 Sum_probs=70.8
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
.+.|||+|||+.+++++|. ++|++||+|..|.|.+++..+ .++++|||+|.+.++|.+||+.|||..++||.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVK---ELLTSFGPLKAFNLVKDSATG-----LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp TTCEEEECCCTTCCHHHHH---HHHHTTSCEEEEEEEECTTTC-----SEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEEcCCCcCCHHHHH---HHHHhcCCceEEEEEecCCCC-----CcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 5789999999999998876 799999999999998875322 24788999999999999999999999999999
Q ss_pred EEEeecC
Q 003956 189 LRACFGT 195 (784)
Q Consensus 189 LRASfGT 195 (784)
|+|.|++
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999974
No 156
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=3.5e-14 Score=121.73 Aligned_cols=80 Identities=10% Similarity=0.045 Sum_probs=67.2
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||.|.. .+.++.... .++++|||+|.+.++|.+||+ |||..++||.
T Consensus 17 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~-~~~~~~~~g-----~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~ 86 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELK---VAISELFAKND-LAVVDVRTG-----TNRKFGYVDFESAEDLEKALE-LTGLKVFGNE 86 (101)
T ss_dssp SEEEEEECCCTTSCHHHHH---HHHHHHHHHHT-CCCCEEEEE-----TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHhCCcce-EEEecCCCC-----CcCcEEEEEECCHHHHHHHHh-cCCcEECCcE
Confidence 4689999999999998876 69999999988 333332211 247789999999999999999 9999999999
Q ss_pred EEEeecCCcc
Q 003956 189 LRACFGTTKY 198 (784)
Q Consensus 189 LRASfGTTKY 198 (784)
|+|.|+..+.
T Consensus 87 l~V~~a~~~~ 96 (101)
T 1fj7_A 87 IKLEKPKGRD 96 (101)
T ss_dssp CEEECCSCCC
T ss_pred EEEEEcCCCC
Confidence 9999987754
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.43 E-value=2.6e-13 Score=130.79 Aligned_cols=79 Identities=15% Similarity=0.357 Sum_probs=70.6
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||.|..|.|.++..+ .+++|||+|.+.++|.+||+.|||..|+||+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~~~i~~d~~~-------~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALY---DTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp TTEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETTE-------EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cccceECCcccccHHHHHH---HHHhhcCCeEEEEeeccCCC-------CceEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 3579999999999998876 79999999999999887542 3778999999999999999999999999999
Q ss_pred EEEeecCCc
Q 003956 189 LRACFGTTK 197 (784)
Q Consensus 189 LRASfGTTK 197 (784)
|+|.|+..|
T Consensus 173 i~V~~a~~~ 181 (213)
T 4f02_A 173 VFVGRFKSR 181 (213)
T ss_dssp CEEEECCCH
T ss_pred EEEEEcCCC
Confidence 999997653
No 158
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=115.51 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=64.0
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.+. +.. .+ +|||+|.+.++|.+||+ |||..++||.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~---~~F~~~G~v~~v~~~--~~~-------g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~ 73 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLS---EYFLAFGPVASVVMD--KDK-------GV-FAIVEMGDVGAREAVLS-QSQHSLGGHR 73 (94)
T ss_dssp CCEEEEECCCTTCCHHHHH---HHGGGTSCEEEEEEC--SSS-------CC-EEEEEESSHHHHHHHHT-CSCCEETTEE
T ss_pred CCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEc--CCC-------Cc-EEEEEECCHHHHHHHHh-cCCeEECCEE
Confidence 3589999999999998876 699999999998332 221 12 89999999999999999 9999999999
Q ss_pred EEEeecCCc
Q 003956 189 LRACFGTTK 197 (784)
Q Consensus 189 LRASfGTTK 197 (784)
|+|.++..+
T Consensus 74 l~V~~a~~~ 82 (94)
T 2e5g_A 74 LRVRPREQK 82 (94)
T ss_dssp CCCBCSCCS
T ss_pred EEEEECCcC
Confidence 999987654
No 159
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.42 E-value=3.4e-13 Score=131.43 Aligned_cols=77 Identities=16% Similarity=0.334 Sum_probs=68.4
Q ss_pred ccCeEEEeCCC-CCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 108 QRNLVYIIGLP-INLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 108 QRNLVYV~GLP-~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
+...|||+||| +.+++++|. ++|++||+|.+|.|.+++ +++|||+|.+.++|.+||+.|||..++|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~---~~F~~~G~v~~v~i~~~~----------~g~afV~f~~~~~A~~Ai~~lng~~~~g 69 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVF---NVFCLYGNVEKVKFMKSK----------PGAAMVEMADGYAVDRAITHLNNNFMFG 69 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHH---HHHTTTSCEEEEEECTTS----------TTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCcccCCHHHHH---HHHHhcCCeEEEEEecCC----------CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999 799887765 799999999999998642 4579999999999999999999999999
Q ss_pred ceEEEeecCCc
Q 003956 187 RPLRACFGTTK 197 (784)
Q Consensus 187 RvLRASfGTTK 197 (784)
|.|+|.|+..+
T Consensus 70 ~~l~v~~s~~~ 80 (205)
T 3tyt_A 70 QKMNVCVSKQP 80 (205)
T ss_dssp EECEEEECSCS
T ss_pred ceEEEEEccCC
Confidence 99999998654
No 160
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.42 E-value=1.1e-13 Score=118.69 Aligned_cols=80 Identities=19% Similarity=0.404 Sum_probs=70.9
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||.|..|.|.+++.+. .+++|||+|.+.++|.+||+ +|..++|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g~------~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIR---SFFARYGSVKEVKIITDRTGV------SKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTSC------EEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEEECCCCC------ccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 35689999999999998876 699999999999999886432 47899999999999999999 99999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|++.++..|-
T Consensus 77 ~l~v~~a~~~~ 87 (102)
T 2xs2_A 77 KLKLGPAIRKQ 87 (102)
T ss_dssp ECEEEEEEECC
T ss_pred EEEEEECCcCc
Confidence 99999987664
No 161
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=1.4e-14 Score=127.69 Aligned_cols=83 Identities=18% Similarity=0.342 Sum_probs=72.1
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEE--------EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK--------VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV 179 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~K--------IvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aL 179 (784)
..+.|||+|||+.+++++|. ++|++||+|.. |.|.+++... ..+++|||+|.+.++|.+||+.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~Ai~~l 77 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVA---DYFKQIGIIKTNKKTGQPMINLYTDRETG-----KLKGEATVSFDDPPSAKAAIDWF 77 (116)
Confidence 35689999999999998876 69999999998 8787765432 24778999999999999999999
Q ss_pred CCCccCCceEEEeecCCcc
Q 003956 180 HSYILDGRPLRACFGTTKY 198 (784)
Q Consensus 180 DG~~LdGRvLRASfGTTKY 198 (784)
||..++||.|+|.|+..+-
T Consensus 78 ~g~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 78 DGKEFSGNPIKVSFATRRA 96 (116)
Confidence 9999999999999987764
No 162
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=2.7e-13 Score=123.45 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=67.3
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEE--------EEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKV--------SISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV 179 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KI--------vInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aL 179 (784)
..+.|||+|||+.+++++|. ++|++||.|..+ .+..+ + ..+++|||+|.+.++|.+||..|
T Consensus 44 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~~~~~~~~di~~~~~--g------~~~g~afV~f~~~~~A~~Ai~~l 112 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLK---YIFGRYVDFSSETQRIMFDIRLMKE--G------RMKGQAFIGLPNEKAAAKALKEA 112 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHH---HHHGGGCCTTCHHHHHHCEEEEEEE--T------TTEEEEEEECSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCcccccccceeeEEeccC--C------CcccEEEEEeCCHHHHHHHHHHh
Confidence 35789999999999998876 699999999763 33332 2 24789999999999999999999
Q ss_pred CCCccCCceEEEeecCCc
Q 003956 180 HSYILDGRPLRACFGTTK 197 (784)
Q Consensus 180 DG~~LdGRvLRASfGTTK 197 (784)
||..++||.|+|.|+..+
T Consensus 113 ng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 113 NGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp TTBEETTEECEEEECCCS
T ss_pred CCCEeCCcEEEEEECCCC
Confidence 999999999999998664
No 163
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=1e-12 Score=130.46 Aligned_cols=103 Identities=24% Similarity=0.376 Sum_probs=87.4
Q ss_pred ccccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 003956 104 VRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (784)
Q Consensus 104 VRVIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~ 183 (784)
-...+++.|||+|||+.+++++|. ++|++||+|..|.|.++ +++|||+|.+.++|.+||..+||..
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~-----------kg~afV~f~~~~~A~~A~~~l~g~~ 82 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFK---RLFERYGEPSEVFINRD-----------RGFGFIRLESRTLAEIAKAELDGTI 82 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHH---HHTGGGCCCSEEEEETT-----------TTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEeCC-----------CcEEEEEECCHHHHHHHHHHcCCcE
Confidence 345567899999999999998886 69999999999999643 4589999999999999999999999
Q ss_pred cCCceEEEeecCCccccccccCcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 184 LDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 184 LdGRvLRASfGTTKYCs~FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
++|+.|+|.|+....+ .|++|.+ ...|.++|......
T Consensus 83 i~g~~l~v~~a~~~~~-l~v~nl~----------------~~~t~~~l~~~F~~ 119 (261)
T 3sde_A 83 LKSRPLRIRFATHGAA-LTVKNLS----------------PVVSNELLEQAFSQ 119 (261)
T ss_dssp ETTEECEEEECCCSSE-EEEESCC----------------TTCCHHHHHHHHGG
T ss_pred ECCceeEeeecccCCc-ccccCCC----------------CCCCHHHHHHHHHh
Confidence 9999999999876443 6777766 46788888877655
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.41 E-value=3e-13 Score=122.50 Aligned_cols=80 Identities=14% Similarity=0.287 Sum_probs=71.4
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||.|..|.|.+++..+ .++|+|||+|.+.++|.+|++ ++|..++||.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFE---EFFSQWGTIIDAQLMLDKDTG-----QSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp CEEEEEEEECTTCCHHHHH---HHHHTTSCCSEEECCCSSSSS-----TTSEEEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred CCeEEECCCCCCCCHHHHH---HHHHhCccEEEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 4589999999999999876 799999999999998775432 257899999999999999998 8999999999
Q ss_pred EEEeecCCc
Q 003956 189 LRACFGTTK 197 (784)
Q Consensus 189 LRASfGTTK 197 (784)
|+|.|+..|
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999876
No 165
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.7e-13 Score=119.95 Aligned_cols=78 Identities=15% Similarity=0.299 Sum_probs=69.2
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++| +|..|.|.+++.+. ++|+|||+|.+.++|.+|| .+||..|+||.
T Consensus 16 ~~~v~V~nLp~~~te~dl~---~~F~~~-~v~~v~i~~d~~g~------~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVR---DFFHGL-RVDAVHLLKDHVGR------NNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHH---HHTTTS-CCCEEEECCCTTCC------CCSEEEEECSSHHHHHHHH-HTTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHhccC-CeeEEEEEECCCCC------CCeEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 3589999999999999986 799999 99999999876543 4789999999999999999 79999999999
Q ss_pred EEEeecCCc
Q 003956 189 LRACFGTTK 197 (784)
Q Consensus 189 LRASfGTTK 197 (784)
|+|..++.+
T Consensus 85 i~V~~a~~~ 93 (109)
T 2dnn_A 85 VEVSPATER 93 (109)
T ss_dssp EEEEECCHH
T ss_pred EEEEECCcc
Confidence 999887543
No 166
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.41 E-value=7.9e-13 Score=119.90 Aligned_cols=79 Identities=18% Similarity=0.375 Sum_probs=69.8
Q ss_pred cccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC-
Q 003956 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD- 185 (784)
Q Consensus 107 IQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld- 185 (784)
.....|||+|||+.+++++|. ++|++||.|..|.|.++..+. ++++|||+|.+.++|.+||+.|||..+.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~v~~~~~~~g~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIR---VMFSSFGQIEECRILRGPDGL------SRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTSC------EEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred CCCCeEEEcCCCCcCCHHHHH---HHHHhCCCEEEEEEEECCCCC------EEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 356789999999999998876 799999999999999886542 4788999999999999999999998776
Q ss_pred --CceEEEeec
Q 003956 186 --GRPLRACFG 194 (784)
Q Consensus 186 --GRvLRASfG 194 (784)
||+|+|.|+
T Consensus 164 g~~~~l~V~~a 174 (175)
T 3nmr_A 164 GCSSPMVVKFA 174 (175)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCCCeEEEec
Confidence 499999986
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.40 E-value=9.2e-13 Score=119.05 Aligned_cols=80 Identities=24% Similarity=0.547 Sum_probs=70.6
Q ss_pred cccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 107 IQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
.....|||+|||..+++++|. ++|++||+|..|.|.++.... .++++|||+|.+.++|.+|++.|||..++|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLD---TIFGKYGSIVQKNILRDKLTG-----RPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHH---HHHTSSSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCEEEeCCCCCCCHHHHH---HhhhcCCcEEEEEEEEcCCCC-----CcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 346789999999999998876 699999999999998876332 247889999999999999999999999988
Q ss_pred --ceEEEeec
Q 003956 187 --RPLRACFG 194 (784)
Q Consensus 187 --RvLRASfG 194 (784)
++|+|.|+
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999985
No 168
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.40 E-value=5e-13 Score=124.15 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=73.8
Q ss_pred cccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 107 IQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
.....|||+|||+.+++++|. ++|++||.|..|.|.+++..+ .++++|||+|.+.++|.+||+.|||..++|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~~~~~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVK---ELLTSFGPLKAFNLVKDSATG-----LSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHH---HHHHTBSCEEEEEEEECTTTC-----SEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHHcCCccEEEEeecCCCC-----CcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 456899999999999998876 699999999999998876332 247889999999999999999999999999
Q ss_pred ceEEEeecCCc
Q 003956 187 RPLRACFGTTK 197 (784)
Q Consensus 187 RvLRASfGTTK 197 (784)
|.|+|.|+..+
T Consensus 184 ~~l~v~~a~~~ 194 (198)
T 2yh0_A 184 KKLLVQRASVG 194 (198)
T ss_dssp EECEEEESCCC
T ss_pred EEEEEEECCCC
Confidence 99999998765
No 169
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.39 E-value=5.8e-13 Score=118.36 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=61.7
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
..+.|||+|||+.+++++|. ++|.+||+|..|.|.++ ++|||+|.+.++|.+||+.|||..|+|+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~~~i~~~------------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLK---DHMREAGDVCYADVYRD------------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCSSCCTTHHH---HHHGGGSCEEEEEECTT------------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEecC------------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 35789999999999999876 79999999999998754 4799999999999999999999999999
Q ss_pred eEEEee
Q 003956 188 PLRACF 193 (784)
Q Consensus 188 vLRASf 193 (784)
.|++.|
T Consensus 80 ~~~~~~ 85 (115)
T 3beg_B 80 EGETAY 85 (115)
T ss_dssp TSCCCB
T ss_pred EeeeEE
Confidence 944433
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.38 E-value=6.2e-13 Score=120.38 Aligned_cols=103 Identities=17% Similarity=0.383 Sum_probs=84.6
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|..|.|.+++..+ .++++|||+|.+.++|.+||+. +..++|+.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~ 72 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLR---EYFGKYGTVTDLKIMKDPATG-----RSRGFGFLSFEKPSSVDEVVKT--QHILDGKV 72 (167)
T ss_dssp GGEEEECSCCTTCCHHHHH---HHHTTTCCEEEEECCCCTTTS-----SCCSCEEEEESSTHHHHHHHHS--CCEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEECCCCC-----CccceEEEEEccHHHHHHHHhc--ccccCCeE
Confidence 4689999999999998876 799999999999998876432 2477899999999999999994 67899999
Q ss_pred EEEeecCCc-----cccccccCcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 189 LRACFGTTK-----YCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 189 LRASfGTTK-----YCs~FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
|++.++..+ .+..|++|.+ ...|++||.....+
T Consensus 73 i~v~~~~~~~~~~~~~~l~V~nlp----------------~~~t~~~l~~~F~~ 110 (167)
T 2cjk_A 73 IDPKRAIPRDEQDKTGKIFVGGIG----------------PDVRPKEFEEFFSQ 110 (167)
T ss_dssp CCCEECCCHHHHHHCEEEEEEEEC----------------TTCCHHHHHHHHHT
T ss_pred cccccccchhhccCCCeEEECCCC----------------CCCCHHHHHHHHHh
Confidence 999987653 3345666665 56899999877655
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.38 E-value=1.4e-12 Score=117.09 Aligned_cols=80 Identities=20% Similarity=0.412 Sum_probs=69.5
Q ss_pred cccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 107 IQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
.....|||+|||+.+++++|. ++|++||.|.+|.|.++...+ .++++|||+|.+.++|.+|++.|||..++|
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELE---QLFSQYGRIITSRILVDQVTG-----VSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCcEEECCCCCcCCHHHHH---HHHHhcCCEeEEEEEecCCCC-----CccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 345779999999999998876 699999999999998776332 247889999999999999999999999999
Q ss_pred ce--EEEeec
Q 003956 187 RP--LRACFG 194 (784)
Q Consensus 187 Rv--LRASfG 194 (784)
|. |++.|+
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 75 888885
No 172
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.37 E-value=1.4e-12 Score=129.57 Aligned_cols=103 Identities=19% Similarity=0.381 Sum_probs=85.3
Q ss_pred ccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
......|||+|||+.+++++|. ++|++||+|..|.|.++..+ .+++|||+|.+.++|.+||+ +||..+.
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~-------~~g~afV~f~~~~~A~~A~~-~~~~~~~ 106 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVY---KYFKHCGPIIHVDVADSLKK-------NFRFARIEFARYDGALAAIT-KTHKVVG 106 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHH---HHHGGGSCEEEEEEEECTTS-------SSEEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCC-------CcEEEEEEECCHHHHHHHHH-hCCcEeC
Confidence 3356789999999999998876 69999999999999987643 26789999999999999995 9999999
Q ss_pred CceEEEeecCCccccccccCcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 186 GRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 186 GRvLRASfGTTKYCs~FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
|+.|++.++ +.+..|++|.+ ...|+++|......
T Consensus 107 g~~i~v~~~--~~~~l~v~nlp----------------~~~t~~~l~~~f~~ 140 (292)
T 2ghp_A 107 QNEIIVSHL--TECTLWMTNFP----------------PSYTQRNIRDLLQD 140 (292)
T ss_dssp TEECEEEEC--CSCEEEEECCC----------------TTCCHHHHHHHHHH
T ss_pred CcEEEEEEC--CCCEEEEECCC----------------CCCCHHHHHHHHHH
Confidence 999999986 45556777776 56789998876655
No 173
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.37 E-value=2.4e-12 Score=127.44 Aligned_cols=113 Identities=16% Similarity=0.264 Sum_probs=87.1
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||.|..|.|.++...+ .++++|||+|.+.++|.+||..|||..++||.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 166 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFE---ELVRPFGSLERCFLVYSERTG-----QSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT 166 (284)
T ss_dssp SCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCCcCCHHHHH---HHHHhcCCeeEEEEEeeCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4689999999999998876 799999999999998776432 24788999999999999999999999999999
Q ss_pred EEEeecCCccccccccCcCCCCCCcccccCCCCCCCCC-cHHHHHHhhhc
Q 003956 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSF-TKDEIVSAFTR 237 (784)
Q Consensus 189 LRASfGTTKYCs~FLRn~~C~N~dCmYLHE~g~~~Dsf-TKeEm~~~~tr 237 (784)
|++.|+..+.-. ..-....++|+.-+. ..+ |++||......
T Consensus 167 i~v~~a~~~~~~-----~~~~~~~~l~v~nlp---~~~~~~~~l~~~f~~ 208 (284)
T 3smz_A 167 LYVHWTDAGQLT-----PALLHSRCLCVDRLP---PGFNDVDALCRALSA 208 (284)
T ss_dssp CEEEECCGGGCC-----TTTTSCSEEEEECCC---TTCCCHHHHHHHTCS
T ss_pred EEEEECCCCCCC-----cccCCccEEEEecCC---cccCCHHHHHHHhhC
Confidence 999998765311 011122344444333 444 78888877655
No 174
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.36 E-value=1e-12 Score=108.95 Aligned_cols=71 Identities=18% Similarity=0.502 Sum_probs=63.6
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccC----C-------ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQY----G-------KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 176 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQY----G-------KI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI 176 (784)
+...|||+|||+.+++++|. ++|++| | +|.+|.+.++ +++|||+|.+.++|.+||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~---~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----------kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMM---DFFNAQMRLGGLTQAPGNPVLAVQINQD-----------KNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHH---HHHHHHHHHTTCCSSSSCSEEEEEECSS-----------SSEEEEEESSHHHHHHHG
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHHhhhcccccCCCCcceEEEecCC-----------CcEEEEEcCCHHHHHHHH
Confidence 45789999999999998876 699999 8 9999988743 457999999999999999
Q ss_pred HHhCCCccCCceEEEee
Q 003956 177 QSVHSYILDGRPLRACF 193 (784)
Q Consensus 177 ~aLDG~~LdGRvLRASf 193 (784)
.|||..++||.|+|..
T Consensus 71 -~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 71 -AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp -GGTTCEETTEECEEEC
T ss_pred -hcCCCEECCeEEEEeC
Confidence 9999999999999873
No 175
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.36 E-value=1.6e-12 Score=120.51 Aligned_cols=81 Identities=16% Similarity=0.320 Sum_probs=69.7
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||.|..|.|.++...+ .++++|||+|.+.++|.+||.. +|..++|+.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~ 174 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLR---DYFEQYGKIEVIEIMTDRGSG-----KKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHN 174 (196)
T ss_dssp CSEEEEECCTTTCCHHHHH---HHHTTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHC-SCCEETTEE
T ss_pred cceEEEeCCCCCCCHHHHH---HHHhcCCCeEEEEEeecCCCC-----CccceEEEEECCHHHHHHHHHh-CCcEECCEE
Confidence 3689999999999998876 799999999999998876432 2478999999999999999987 899999999
Q ss_pred EEEeecCCcc
Q 003956 189 LRACFGTTKY 198 (784)
Q Consensus 189 LRASfGTTKY 198 (784)
|+|.|+..|-
T Consensus 175 i~v~~a~~k~ 184 (196)
T 1l3k_A 175 CEVRKALSKQ 184 (196)
T ss_dssp CEEEECC---
T ss_pred EEEEecCChh
Confidence 9999988764
No 176
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.35 E-value=4.1e-12 Score=113.02 Aligned_cols=82 Identities=20% Similarity=0.378 Sum_probs=66.9
Q ss_pred ccCeEEEeCCCC--CC---ChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 003956 108 QRNLVYIIGLPI--NL---ADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 182 (784)
Q Consensus 108 QRNLVYV~GLP~--~I---AeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~ 182 (784)
....|||.||.. .+ .+++|. +.|++||+|.+|.|.+++... ...+|+|||+|.+.++|.+||++|||.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~---~~f~~~G~V~~v~i~~~~~~~----~~~~G~~FV~f~~~~~A~~Ai~~lnG~ 79 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETK---EECEKYGKVGKCVIFEIPGAP----DDEAVRIFLEFERVESAIKAVVDLNGR 79 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHH---HHGGGGSCEEEEEEEECSSCC----TTTSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHH---HHHHhcCCEEEEEEecCCCCC----CCCcEEEEEEECCHHHHHHHHHHHCCC
Confidence 346789999963 22 355654 799999999999998875321 125789999999999999999999999
Q ss_pred ccCCceEEEeecCC
Q 003956 183 ILDGRPLRACFGTT 196 (784)
Q Consensus 183 ~LdGRvLRASfGTT 196 (784)
.++||+|+|.|+..
T Consensus 80 ~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 80 YFGGRVVKACFYNL 93 (105)
T ss_dssp EETTEECEEEECCH
T ss_pred EECCcEEEEEEcCH
Confidence 99999999999865
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.35 E-value=2.1e-12 Score=110.40 Aligned_cols=75 Identities=20% Similarity=0.330 Sum_probs=61.0
Q ss_pred ccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc-
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL- 184 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L- 184 (784)
...-+.|||+|||+.+++++|. ++|++||+|.+|.|.++ ++|+|||+|.+.++|.+ ++|..+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~---~~F~~~G~i~~v~i~~~----------srGfaFV~F~~~~~A~~----~~~~~~~ 70 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQ---QFFCQYGEVVDVFIPKP----------FRAFAFVTFADDKVAQS----LCGEDLI 70 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEECCSS----------CCSEEEEEESCHHHHHH----HTTCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHhccCCEEEEEEeeC----------CCCEEEEEECCHHHHHH----HcCCCcc
Confidence 3456899999999999998876 79999999999999863 26689999999999983 677655
Q ss_pred -CCceEEEeecCCc
Q 003956 185 -DGRPLRACFGTTK 197 (784)
Q Consensus 185 -dGRvLRASfGTTK 197 (784)
.|+.|++.++..|
T Consensus 71 ~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 71 IKGISVHISNAEPK 84 (89)
T ss_dssp ETTEEEEEEECC--
T ss_pred cCCEEEEEEEcCCC
Confidence 5999999998776
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.35 E-value=2.3e-12 Score=118.12 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=67.3
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|++||.|..| ...+ .++++|||+|.+.++|.+||+.|||..++||
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~---~~F~~~g~v~~~----~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELK---EVFEDALEIRLV----SQDG------KSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHH---HHCTTCSEEEEE----CSSS------SCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHH---HHHHhcCeEEEe----cCCC------CCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 46789999999999998876 699999999876 2222 2477899999999999999999999999999
Q ss_pred eEEEeecCCc
Q 003956 188 PLRACFGTTK 197 (784)
Q Consensus 188 vLRASfGTTK 197 (784)
.|+|.|+..|
T Consensus 165 ~i~v~~a~~k 174 (175)
T 1fje_B 165 SVSLYYTGEK 174 (175)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEecCCC
Confidence 9999999765
No 179
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.1e-13 Score=121.72 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=64.5
Q ss_pred cCeEEE--eCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc--
Q 003956 109 RNLVYI--IGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL-- 184 (784)
Q Consensus 109 RNLVYV--~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L-- 184 (784)
.+.||| +||++.+++++|. ++|++||+|..|+|... +++|||+|.+.++|.+||++|||..+
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~---~~F~~fG~v~~v~i~~~-----------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLL---PVLEKCGLVDALLMPPN-----------KPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHH---HHHHHHSCEEEEECCTT-----------CSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCEEEEECCCCCCCCCHHHHH---HHHHhcCCeEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 456999 8899999988876 79999999999987631 45799999999999999999999988
Q ss_pred ---CCceEEEeecCC
Q 003956 185 ---DGRPLRACFGTT 196 (784)
Q Consensus 185 ---dGRvLRASfGTT 196 (784)
.|++|.+.|+..
T Consensus 91 ~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 91 DLGQKITLYLNFVEK 105 (114)
T ss_dssp TTSCEEECEEEEESC
T ss_pred ccCCCcEEEEEeccc
Confidence 789999998653
No 180
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=4.6e-13 Score=122.66 Aligned_cols=76 Identities=18% Similarity=0.346 Sum_probs=66.4
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCce----EEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKV----LKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI----~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
...|||+|||+.++++||. ++|.+||+| ..|.|.++..+. ++++|||+|.+.++|.+||+. ||..|
T Consensus 23 ~~~v~V~nLp~~~te~dl~---~~F~~~g~v~g~v~~v~i~~d~~gr------~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVV---AFFGQHCPITGGKEGILFVTYPDGR------PTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CCEEEECSCCTTCCHHHHH---HHHHTTSCCTTGGGGEEEEECTTSC------EEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhhCCccCCcceEEEEECCCCC------EeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 4689999999999999986 799999986 688888775443 478999999999999999997 99999
Q ss_pred CCceEEEeec
Q 003956 185 DGRPLRACFG 194 (784)
Q Consensus 185 dGRvLRASfG 194 (784)
+||.|+|..+
T Consensus 93 ~gR~i~V~~a 102 (123)
T 2dha_A 93 GKRYIELFRS 102 (123)
T ss_dssp SSCEECCEEE
T ss_pred CCeEEEEEEC
Confidence 9999988764
No 181
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.34 E-value=3e-12 Score=116.42 Aligned_cols=99 Identities=17% Similarity=0.440 Sum_probs=79.4
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccC----C-------ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQY----G-------KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 176 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQY----G-------KI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI 176 (784)
+...|||+|||+.+++++|. ++|++| | .|.++.+.+. +++|||+|.+.++|.+||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----------~g~afV~f~~~~~A~~A~ 68 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMM---DFFNAQMRLGGLTQAPGNPVLAVQINQD-----------KNFAFLEFRSVDETTQAM 68 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHH---HHHHHHHHHTTCCSSSSCSEEEEEEETT-----------TTEEEEEESSHHHHHHHG
T ss_pred cccEEEEcCCCcccCHHHHH---HHHHHHhhhcccccCCCCceeeeEecCC-----------CCEEEEEeCCHHHHHHHH
Confidence 46789999999999998876 699999 6 6666666532 568999999999999999
Q ss_pred HHhCCCccCCceEEEeecCCc-----cccccccCcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 177 QSVHSYILDGRPLRACFGTTK-----YCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 177 ~aLDG~~LdGRvLRASfGTTK-----YCs~FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
.+||..++|+.|++.++..+ .+..|++|.+ ...|.+||.....+
T Consensus 69 -~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp----------------~~~t~~~l~~~f~~ 117 (172)
T 2g4b_A 69 -AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLP----------------NYLNDDQVKELLTS 117 (172)
T ss_dssp -GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCC----------------TTCCHHHHHHHHHT
T ss_pred -HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCC----------------CcCCHHHHHHHHHh
Confidence 89999999999999987654 2334555554 46789999877655
No 182
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.33 E-value=4.8e-13 Score=125.03 Aligned_cols=78 Identities=17% Similarity=0.331 Sum_probs=69.2
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|.+|| |++|.|.+++.+. ++++|||+|.+.++|.+|| .+||..|+||.
T Consensus 46 ~~~lfV~nLp~~~te~dL~---~~F~~~G-i~~v~i~~d~~g~------srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~ 114 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIY---NFFSPLN-PVRVHIEIGPDGR------VTGEADVEFATHEEAVAAM-SKDRANMQHRY 114 (139)
T ss_dssp CCCEECCSCCTTCCHHHHH---HHHCSCC-CSEEECCCSSSSC------SSCCCEEECSHHHHHHHHT-TCCSCSSSSCC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcC-CeEEEEEECCCCC------CceEEEEEeCCHHHHHHHH-hhCCCEECCEE
Confidence 4679999999999999976 7999999 7799998876532 4788999999999999999 88999999999
Q ss_pred EEEeecCCc
Q 003956 189 LRACFGTTK 197 (784)
Q Consensus 189 LRASfGTTK 197 (784)
|+|.+++.+
T Consensus 115 i~V~~a~~~ 123 (139)
T 2hgn_A 115 IELFLNSTT 123 (139)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999987664
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=2.4e-12 Score=116.36 Aligned_cols=75 Identities=16% Similarity=0.413 Sum_probs=65.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|| .+++++|. ++|++||+|..|.|.+ .+++|||+|.+.++|.+||+.|||..++|+
T Consensus 38 ~~~~lfVgnl--~~te~~L~---~~F~~~G~I~~v~i~~-----------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLR---GAFSPFGNIIDLSMDP-----------PRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp CCCEEEEECS--SCCHHHHH---HHHSTTCCCSCEEEET-----------TTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCEEEEcCC--CCCHHHHH---HHHHccCCEEEEEEeC-----------CCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3578999996 68888876 7999999999999861 256899999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 003956 188 PLRACFGTTKY 198 (784)
Q Consensus 188 vLRASfGTTKY 198 (784)
.|+|.|+..+-
T Consensus 102 ~l~V~~a~~~~ 112 (121)
T 2bz2_A 102 QLKVNIARKQP 112 (121)
T ss_dssp BCEEEECCSSC
T ss_pred EEEEEEeCCCC
Confidence 99999988763
No 184
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.33 E-value=9.7e-13 Score=121.47 Aligned_cols=79 Identities=13% Similarity=0.363 Sum_probs=68.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceE--EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL--KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~--KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
+...|||+|||+.+++++|. ++|++| .|+ .|.|.+++.+. ++|+|||+|.+.++|.+||+. +|..|+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~---~~F~~~-~i~~~~v~i~~d~~Gr------srGfaFV~F~~~e~A~~Al~~-~~~~l~ 109 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIV---QFFSGL-EIVPNGITLPVDPEGK------ITGEAFVQFASQELAEKALGK-HKERIG 109 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHH---HHTTTS-CEEEEEEECCCCSSSS------SCSEEEEEESSTTHHHHHHTT-TTCCBT
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHhcC-CceeeEEEEEECCCCC------CceEEEEEECCHHHHHHHHHH-CCCEEC
Confidence 46789999999999999986 799999 677 89998877643 478999999999999999985 889999
Q ss_pred CceEEEeecCCc
Q 003956 186 GRPLRACFGTTK 197 (784)
Q Consensus 186 GRvLRASfGTTK 197 (784)
||.|+|.+++.+
T Consensus 110 gR~I~V~~a~~~ 121 (126)
T 2hgm_A 110 HRYIEVFKSSQE 121 (126)
T ss_dssp TBCCCCEEECHH
T ss_pred CEEEEEEECCHH
Confidence 999999887653
No 185
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.32 E-value=6.8e-13 Score=121.63 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=80.9
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
....|||+|||+.+++++|. ++|.+||.|..+.|.....+ ..+++|||+|.+.++|.+|| .|||..+.||
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~---~~f~~~g~~~~~~~~~~~~~------~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 81 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELK---VAISELFAKNDLAVVDVRTG------TNRKFGYVDFESAEDLEKAL-ELTGLKVFGN 81 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHH---HHHHHHHHHHTCCCCEEEEE------TTTTEEEEEESSHHHHHHHH-HGGGEEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHhCCcceEEEEECCCC------ccccEEEEEECCHHHHHHHH-hcCCCEeCCe
Confidence 45789999999999999886 69999998877333222222 24778999999999999999 5999999999
Q ss_pred eEEEeecCCcc-------ccccccCcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 188 PLRACFGTTKY-------CHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 188 vLRASfGTTKY-------Cs~FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
.|++.++..+- +..|++|.+ ...|.+||.....+
T Consensus 82 ~l~v~~~~~~~~~~~~~~~~l~v~nlp----------------~~~t~~~l~~~F~~ 122 (175)
T 1fje_B 82 EIKLEKPKGRDSKKVRAARTLLAKNLS----------------FNITEDELKEVFED 122 (175)
T ss_dssp EEEEECCCCSSCSTTGGGGEEEEESCC----------------SSCCHHHHHHHCTT
T ss_pred EEEEecCCCccccccccCCEEEEeCCC----------------CCCCHHHHHHHHHh
Confidence 99999987542 334555554 46788998876655
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.32 E-value=3.5e-12 Score=126.25 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=73.1
Q ss_pred cccCeEEEeCCCCCC-ChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 107 IQRNLVYIIGLPINL-ADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 107 IQRNLVYV~GLP~~I-AeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
...+.|||+|||+.+ ++++|. ++|++||.|..|.|.++..+. ++++|||+|.+.++|.+||..|||..++
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~---~~f~~~G~i~~v~i~~~~~g~------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALC---RALSAVHSPTFCQLACGQDGQ------LKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHH---HHTCSSSCCSEEEEEECSSCC------EEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCccEEEEecCCcccCCHHHHH---HHhhCCCCeEEEEEEECCCCC------cccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 456789999999997 666665 799999999999998876543 4789999999999999999999999999
Q ss_pred CceEEEeecCCcc
Q 003956 186 GRPLRACFGTTKY 198 (784)
Q Consensus 186 GRvLRASfGTTKY 198 (784)
||.|+|.|+..+-
T Consensus 253 g~~l~v~~a~~~~ 265 (284)
T 3smz_A 253 GSHLRVSFCAPGP 265 (284)
T ss_dssp TEECEEEECCSSS
T ss_pred CeEEEEEEecCCC
Confidence 9999999987764
No 187
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3.9e-12 Score=112.39 Aligned_cols=80 Identities=16% Similarity=0.319 Sum_probs=63.4
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRv 188 (784)
...|||+|||+.+++++|. ++|++||+|. +.+..+..... ....+++|||+|.+.++|.+||++|++ ++|+.
T Consensus 8 ~~~lfVgnLp~~~te~~L~---~~F~~~G~i~-~~~~~~~~~~~--~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~ 79 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEIT---ASFRRFGPLV-VDWPHKAESKS--YFPPKGYAFLLFQEESSVQALIDACLE--EDGKL 79 (114)
T ss_dssp CCCEEEECCCTTCCHHHHH---HHTTTTCCCC-EECTTSSSSCC--CSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEE
T ss_pred CCEEEEcCCCCCCCHHHHH---HHHHhcCCEE-EEEeecCCCCC--CCCcccEEEEEECCHHHHHHHHHhhhh--cCCcE
Confidence 4679999999999998876 7999999999 77766554310 012578999999999999999999953 78888
Q ss_pred EEEeecCC
Q 003956 189 LRACFGTT 196 (784)
Q Consensus 189 LRASfGTT 196 (784)
|.+....+
T Consensus 80 ~~~~~~~~ 87 (114)
T 2dnl_A 80 YLCVSSPT 87 (114)
T ss_dssp EEEECCSS
T ss_pred EEeccCCC
Confidence 87765543
No 188
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.30 E-value=4.8e-12 Score=122.68 Aligned_cols=81 Identities=19% Similarity=0.357 Sum_probs=69.7
Q ss_pred ccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
.++...|||+|||+.+++++|. ++|++||+|..|.|.++..+. .+|+|||+|.+.++|.+||..++ ..++
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~v~~v~i~~~~~~~------~kG~aFVeF~~~e~A~~A~~~~~-~~~~ 175 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIK---EWLEDKGQVLNIQMRRTLHKA------FKGSIFVVFDSIESAKKFVETPG-QKYK 175 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHH---HHHTTSCCEEEEEEEECTTCC------EEEEEEEEESSHHHHHHHHHCTT-CEET
T ss_pred ccccCEEEecCCCCcCCHHHHH---HHHhcCCCEEEEEEEECCCCC------cccEEEEEECCHHHHHHHHHhCC-CeEC
Confidence 4456889999999999988876 799999999999999876532 47899999999999999998765 5999
Q ss_pred CceEEEeecCC
Q 003956 186 GRPLRACFGTT 196 (784)
Q Consensus 186 GRvLRASfGTT 196 (784)
||.|+|.+...
T Consensus 176 Gr~l~V~~~~~ 186 (193)
T 2voo_A 176 ETDLLILFKDD 186 (193)
T ss_dssp TEECEEEETTT
T ss_pred CEEEEEEEhHH
Confidence 99999997543
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.29 E-value=3.6e-12 Score=126.65 Aligned_cols=81 Identities=22% Similarity=0.486 Sum_probs=72.1
Q ss_pred cccCeEEEeCCCCC-CChHHHHHHHHhhccCCceEEEEEeecCC--CCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 003956 107 IQRNLVYIIGLPIN-LADEDLLQRKEYFGQYGKVLKVSISRTAT--GDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (784)
Q Consensus 107 IQRNLVYV~GLP~~-IAeEDLLR~~EyFGQYGKI~KIvInrdk~--g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~ 183 (784)
.....|||+|||+. +++++|. ++|++||.|..|.|.++.. + .++++|||+|.+.++|.+|| .|||..
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~tg------~~~g~afV~F~~~~~A~~A~-~l~g~~ 277 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLR---ESFEGFGSIEKINIPAGQKEHS------FNNCCAFMVFENKDSAERAL-QMNRSL 277 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHH---HHHGGGSCEEEEECCSCCC---------CCCEEEEEEESSHHHHHHHG-GGTTEE
T ss_pred CCCceEEEECCCcccCCHHHHH---HHHhccCCeeEEEEEecCCcCC------CCceEEEEEeCCHHHHHHHH-HhcCCE
Confidence 34578999999999 9988876 7999999999999987654 3 25789999999999999999 999999
Q ss_pred cCCceEEEeecCCc
Q 003956 184 LDGRPLRACFGTTK 197 (784)
Q Consensus 184 LdGRvLRASfGTTK 197 (784)
++||.|+|.|+..|
T Consensus 278 ~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 278 LGNREISVSLADKK 291 (292)
T ss_dssp ETTEEEEEEECCCC
T ss_pred ECCcEEEEEEecCC
Confidence 99999999999876
No 190
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.29 E-value=6.4e-12 Score=116.74 Aligned_cols=112 Identities=13% Similarity=0.321 Sum_probs=80.2
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCC-----------ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYG-----------KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 176 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYG-----------KI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI 176 (784)
+...|||+|||+.+++++|. ++|++|| .|.++.+.+ .+++|||+|.+.++|.+||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~---~~F~~~g~i~g~~~~~~~~v~~~~~~~-----------~~g~afV~F~~~~~A~~Al 68 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMM---DFFNAQMRLGGLTQAPGNPVLAVQINQ-----------DKNFAFLEFRSVDETTQAM 68 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHH---HHHHHHHHHHTCCSSSSCSEEEEEEET-----------TTTEEEEEESCSHHHHHHG
T ss_pred ceeEEEEcCCCCCCCHHHHH---HHHHHHHhhcccccCCCCceEEeEecC-----------CCCEEEEEeCCHHHHHHHH
Confidence 35689999999999998876 7999995 455555432 2568999999999999999
Q ss_pred HHhCCCccCCceEEEeecCCccccc------------cccCcCCCCCCcccccCCCCCCCCCcHHHHHHhhhc
Q 003956 177 QSVHSYILDGRPLRACFGTTKYCHA------------WIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (784)
Q Consensus 177 ~aLDG~~LdGRvLRASfGTTKYCs~------------FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~~~tr 237 (784)
.|||..++|+.|++.++..+.... ...........++|+.-+. ...|.+||......
T Consensus 69 -~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~---~~~~~~~l~~~f~~ 137 (198)
T 2yh0_A 69 -AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLP---NYLNDDQVKELLTS 137 (198)
T ss_dssp -GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCC---TTCCHHHHHHHHHT
T ss_pred -HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCC---CCCCHHHHHHHHHH
Confidence 899999999999999976542111 0111111233455555444 36789998877655
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.29 E-value=6.4e-12 Score=124.29 Aligned_cols=75 Identities=12% Similarity=0.286 Sum_probs=67.7
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC-C
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-G 186 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld-G 186 (784)
..+.|||+|||..+++++|. ++|++||.|.+|.|.+++ +++|||+|.+.++|.+||+.|||..++ |
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~---~~F~~~G~i~~v~~~~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLS---MLFNQFPGFKEVRLVPGR----------HDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHH---HHHHhcCCeEEEEEecCC----------CcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 45789999999999988876 799999999999998543 357999999999999999999999999 9
Q ss_pred ceEEEeecC
Q 003956 187 RPLRACFGT 195 (784)
Q Consensus 187 RvLRASfGT 195 (784)
|.|+|+|+.
T Consensus 273 ~~l~v~~ak 281 (282)
T 3pgw_A 273 NAMKISFAK 281 (282)
T ss_pred CEEEEEEec
Confidence 999999974
No 192
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.9e-12 Score=108.63 Aligned_cols=75 Identities=20% Similarity=0.346 Sum_probs=62.7
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC--ccC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY--ILD 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~--~Ld 185 (784)
+.+.|||+|||+.+++++|. ++|++||+|..|.|.++ .+++|||+|.+.++|.+| +|. .+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~~----~~~~~~~~ 66 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELR---EFFSQYGDVMDVFIPKP----------FRAFAFVTFADDQIAQSL----CGEDLIIK 66 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHH---HHSTTTSCCCEEECCSS----------CCSCCEEECSCHHHHHHT----TTCEEEET
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHcCCeeEEEEecC----------CCCEEEEEECCHHHHHHH----hcCCceeC
Confidence 45789999999999998876 69999999999998754 255799999999999754 554 459
Q ss_pred CceEEEeecCCccc
Q 003956 186 GRPLRACFGTTKYC 199 (784)
Q Consensus 186 GRvLRASfGTTKYC 199 (784)
|+.|++.++..|.-
T Consensus 67 g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 67 GISVHISNAEPKHN 80 (88)
T ss_dssp TEEEEEECCCCCCC
T ss_pred CEEEEEEecCCCCC
Confidence 99999999887643
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.27 E-value=5.4e-12 Score=118.44 Aligned_cols=77 Identities=18% Similarity=0.304 Sum_probs=68.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCC-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC-
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD- 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYG-KI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld- 185 (784)
..+.|||+|||..+++++|. ++|++|| +|..|.|.++. +++|||+|.+.++|.+||+.|||..++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~---~~f~~~G~~v~~v~i~~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~~~ 185 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLK---VLFSSNGGVVKGFKFFQKD----------RKMALIQMGSVEEAVQALIDLHNHDLGE 185 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHH---HHHHHTTSCCCEEEESSTT----------SSCEEEECSSHHHHHHHHHHHTSSCCSS
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHHcCCCceEEEEEeCC----------CcEEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 36789999999999988876 7999999 99999986532 447999999999999999999999999
Q ss_pred CceEEEeecCCc
Q 003956 186 GRPLRACFGTTK 197 (784)
Q Consensus 186 GRvLRASfGTTK 197 (784)
||.|++.|+..+
T Consensus 186 g~~l~v~~a~~~ 197 (198)
T 1qm9_A 186 NHHLRVSFSKST 197 (198)
T ss_dssp CCSCCEEEECCC
T ss_pred CCeEEEEeeccc
Confidence 999999998764
No 194
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.27 E-value=4.9e-12 Score=128.63 Aligned_cols=76 Identities=13% Similarity=0.312 Sum_probs=65.6
Q ss_pred ccCeEEEeCCCCCC---------ChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHH
Q 003956 108 QRNLVYIIGLPINL---------ADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQS 178 (784)
Q Consensus 108 QRNLVYV~GLP~~I---------AeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~a 178 (784)
+..+|||+||+..+ ++++|. ++|++||+|..|.|.+. +++|||+|.+.++|..||++
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~---~~F~~fG~I~~v~v~~~-----------kG~AFV~F~~~~~Ae~A~~a 198 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIR---FVFSRLGDIDRIRYVES-----------KNCGFVKFKYQANAEFAKEA 198 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHH---HHHHTTSCEEEEEEEGG-----------GTEEEEEESSHHHHHHHHHH
T ss_pred CCceeecCCCChhhhcccccccCcHHHHH---HHHHccCCEEEEEEECC-----------CCEEEEEeCCHHHHHHHHHH
Confidence 45789999999998 455554 79999999999999843 45899999999999999999
Q ss_pred hCCCcc------------CCceEEEeecCCc
Q 003956 179 VHSYIL------------DGRPLRACFGTTK 197 (784)
Q Consensus 179 LDG~~L------------dGRvLRASfGTTK 197 (784)
|+|..| +|+.|+|.|++.+
T Consensus 199 m~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 199 MSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred hCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 999999 8999999999765
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.5e-11 Score=108.66 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=63.7
Q ss_pred cccCeEEEeCCCCCCC-----------hHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHH
Q 003956 107 IQRNLVYIIGLPINLA-----------DEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRC 175 (784)
Q Consensus 107 IQRNLVYV~GLP~~IA-----------eEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kA 175 (784)
.....|+|.||..... +++| + ++|++||+|.+|.| .++. ++|+|||+|.+.++|.+|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l-~--~~f~~~G~v~~v~i-~~~~--------~~G~afV~f~~~~~A~~A 80 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDL-R--VECSKFGQIRKLLL-FDRH--------PDGVASVSFRDPEEADYC 80 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHH-H--HHGGGTSCCSEEEE-ETTC--------TTCEEEEECSCHHHHHHH
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHH-H--HHHHccCCEeEEEE-ecCC--------CCEEEEEEECCHHHHHHH
Confidence 3567899999944321 2344 3 79999999999977 3331 367899999999999999
Q ss_pred HHHhCCCccCCceEEEeecCCc
Q 003956 176 IQSVHSYILDGRPLRACFGTTK 197 (784)
Q Consensus 176 I~aLDG~~LdGRvLRASfGTTK 197 (784)
|+.|||..++||+|+|.|+..+
T Consensus 81 i~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 81 IQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HHHSTTCEETTEECEEEECCSC
T ss_pred HHHcCCCEECCcEEEEEEeCCC
Confidence 9999999999999999997553
No 196
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.26 E-value=1.1e-11 Score=112.43 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=64.2
Q ss_pred HHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCceEEEeecC-CccccccccCcCC
Q 003956 130 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT-TKYCHAWIRNMPC 208 (784)
Q Consensus 130 ~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvLRASfGT-TKYCs~FLRn~~C 208 (784)
.+.|++||+|.+|.|.++. ++|+|||+|.+.++|.+||++|||..++||+|+|.|.. ++|+..|.....|
T Consensus 35 ~~~f~kfG~V~~v~i~~~~---------~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~fp~a~~~ 105 (114)
T 3s6e_A 35 IEECNKHGGVIHIYVDKNS---------AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTA 105 (114)
T ss_dssp HHHHTTTTCCSEEEECTTC---------TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHHCGGGSSC
T ss_pred HHHHhccCCEEEEEEecCC---------CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHhCcccccc
Confidence 4899999999999997653 25679999999999999999999999999999999974 5799999988877
Q ss_pred CCC
Q 003956 209 SVP 211 (784)
Q Consensus 209 ~N~ 211 (784)
+-+
T Consensus 106 ~~~ 108 (114)
T 3s6e_A 106 TQL 108 (114)
T ss_dssp CSC
T ss_pred Ccc
Confidence 643
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.25 E-value=1.6e-12 Score=115.02 Aligned_cols=76 Identities=20% Similarity=0.390 Sum_probs=62.2
Q ss_pred EEeCCCCCCChHHHHHH--------HHhh-ccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 003956 113 YIIGLPINLADEDLLQR--------KEYF-GQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (784)
Q Consensus 113 YV~GLP~~IAeEDLLR~--------~EyF-GQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~ 183 (784)
++.||++.+++++|.+. .+.| ++||+|.+|.|.++..+ .++|+|||+|.+.++|.+||++|||..
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~------~~~G~~fV~f~~~~~A~~A~~~lng~~ 92 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGD------HLVGNVYVKFRREEDAEKAVIDLNNRW 92 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSS------SSEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCC------CccEEEEEEECCHHHHHHHHHHHCCCE
Confidence 36788888877766321 2455 99999999999877643 258899999999999999999999999
Q ss_pred cCCceEEEeec
Q 003956 184 LDGRPLRACFG 194 (784)
Q Consensus 184 LdGRvLRASfG 194 (784)
++||+|+|.|.
T Consensus 93 ~~Gr~i~v~~s 103 (104)
T 1jmt_A 93 FNGQPIHAELS 103 (104)
T ss_dssp ETTEECCEEEC
T ss_pred ECCEEEEEEEc
Confidence 99999999985
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.25 E-value=1.7e-11 Score=119.34 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=68.1
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCC-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC-C
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-G 186 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYG-KI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld-G 186 (784)
.+.|||+|||+.+++++|. ++|++|| +|..|.|..+. +++|||+|.+.++|.+||+.|||..++ |
T Consensus 151 ~~~l~V~nlp~~~t~~~l~---~~f~~~G~~i~~v~i~~~~----------~g~afV~f~~~~~A~~Ai~~l~g~~~~~g 217 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLK---VLFSSNGGVVKGFKFFQKD----------RKMALIQMGSVEEAVQALIDLHNHDLGEN 217 (229)
T ss_dssp CSEEEEECCCTTCCHHHHH---HHHHTTSCCEEEEEECSSS----------TTCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCEEEEeCCCccCCHHHHH---HHHHHcCCCeeEEEEEECC----------CcEEEEEECCHHHHHHHHHHHCCCccCCC
Confidence 5789999999999988876 7999999 99999986431 347999999999999999999999999 9
Q ss_pred ceEEEeecCCc
Q 003956 187 RPLRACFGTTK 197 (784)
Q Consensus 187 RvLRASfGTTK 197 (784)
|.|+|+|+..+
T Consensus 218 ~~l~v~~a~~~ 228 (229)
T 2adc_A 218 HHLRVSFSKST 228 (229)
T ss_dssp CBCEEEECSSC
T ss_pred CeEEEEEecCC
Confidence 99999998764
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.24 E-value=1.4e-11 Score=109.33 Aligned_cols=63 Identities=14% Similarity=0.268 Sum_probs=55.0
Q ss_pred HhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCceEEEeecCC
Q 003956 131 EYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTT 196 (784)
Q Consensus 131 EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvLRASfGTT 196 (784)
+.|++||+|.+|.|.+++.+.. ...+|+|||+|.+.++|.+||++|||..++||+|+|.|...
T Consensus 34 ~~f~k~G~V~~v~i~~~~~~~~---~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 34 DECSKYGLVKSIEIPRPVDGVE---VPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHTTSCEEEEECCCCBTTBC---CTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHccCCEEEEEEeccCCCCC---cCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 8999999999999988765421 12478999999999999999999999999999999999644
No 200
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.4e-11 Score=116.78 Aligned_cols=79 Identities=14% Similarity=0.256 Sum_probs=67.8
Q ss_pred CeEEEeCC----CCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCC----HHH----HHHHHH
Q 003956 110 NLVYIIGL----PINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR----EDD----AIRCIQ 177 (784)
Q Consensus 110 NLVYV~GL----P~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~----kED----A~kAI~ 177 (784)
..|||+|| |+.+++++|. +||++||+|..+.+..++.++ .++|++||+|.+ .++ |.+||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk---~~Fs~fGeV~~~~li~Dp~Tg-----~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIK---NYFKKYGEISHFEAFNDPNSA-----LPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHH---HHHHTTSCCSEEEEEECTTTC-----CEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----ceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 57999999 9999988775 899999999999999988765 368999999996 444 899999
Q ss_pred --HhCCCccCCceEEEeecCC
Q 003956 178 --SVHSYILDGRPLRACFGTT 196 (784)
Q Consensus 178 --aLDG~~LdGRvLRASfGTT 196 (784)
.+||..++||.|||.+-..
T Consensus 75 ~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 75 KHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp HTTTTCEEETTEEEEEEECCT
T ss_pred HhhhcCCeecCcEEEEEECcc
Confidence 8999999999999997543
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.17 E-value=3.3e-11 Score=109.81 Aligned_cols=83 Identities=17% Similarity=0.319 Sum_probs=63.2
Q ss_pred cCeEEEeCCC--CCCC---hHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 003956 109 RNLVYIIGLP--INLA---DEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (784)
Q Consensus 109 RNLVYV~GLP--~~IA---eEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~ 183 (784)
...|++.||- ..+. ++||. +.|++||+|.+|.|.+++.+.. ..+..+|+|||+|.+.++|.+||++|||..
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~---eef~k~G~V~~v~I~~~~~~~~-~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVT---EECGKFGAVNRVIIYQEKQGEE-EDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHH---HHHTTTSCEEEEEEEEEEESSS-TTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHH---HHHhccCCEeEEEEeecCCCcc-cCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 4567777773 2222 34544 8999999999999988754210 011135889999999999999999999999
Q ss_pred cCCceEEEeecC
Q 003956 184 LDGRPLRACFGT 195 (784)
Q Consensus 184 LdGRvLRASfGT 195 (784)
++||+|+|.|..
T Consensus 96 f~GR~i~v~~~~ 107 (118)
T 3ue2_A 96 FAGRKVVAEVYD 107 (118)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCcEEEEEEcC
Confidence 999999999864
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.13 E-value=5.8e-11 Score=115.73 Aligned_cols=69 Identities=14% Similarity=0.349 Sum_probs=60.8
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCce--EEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKV--LKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI--~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdG 186 (784)
...|||+|||+.+++++|. ++|++||.| .+|.|..++ +. ++++|||+|.+.++|.+||..|||..|+|
T Consensus 123 ~~~l~v~NLp~~~t~~~L~---~~F~~~G~v~~~~v~~~~~~-~~------~~g~gfV~f~~~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFF---EICDELGVKRPTSVKVFSGK-SE------RSSSGLLEWDSKSDALETLGFLNHYQMKN 192 (205)
T ss_dssp CSEEEEEEECTTCCHHHHH---HHHHHHTCCCCSEEEECSCC-SS------SSEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred cceEEEeCCCCCCCHHHHH---HHHHhcCCcceEEEEEEcCC-CC------CceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence 4579999999999988875 799999999 899988665 21 35789999999999999999999999999
Q ss_pred c
Q 003956 187 R 187 (784)
Q Consensus 187 R 187 (784)
+
T Consensus 193 ~ 193 (205)
T 3tyt_A 193 P 193 (205)
T ss_dssp S
T ss_pred C
Confidence 8
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.12 E-value=1.4e-10 Score=115.30 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=69.2
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC-CccC-
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS-YILD- 185 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG-~~Ld- 185 (784)
....|||+|||+.+++++|. ++|++||+|.+|.|.++..+. ++++|||+|.+.++|.+||..||| ..+.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g~------~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLE---QAFSQFGPVEKAVVVVDDRGR------ATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETTSC------EEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred cCCcccccCCCCCCCHHHHH---HHHHhcCCeEEEEeeeCCCCC------cCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 35789999999999988876 799999999999998886443 478999999999999999999955 4444
Q ss_pred --CceEEEeecCCc
Q 003956 186 --GRPLRACFGTTK 197 (784)
Q Consensus 186 --GRvLRASfGTTK 197 (784)
||+|+|.++..+
T Consensus 166 ~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 166 TTPRPVIVEPMEQF 179 (261)
T ss_dssp SSCCBCEEEECCCE
T ss_pred CCCceEEEeecccc
Confidence 999999998754
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.96 E-value=8e-10 Score=117.59 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=63.0
Q ss_pred ccCeEEEeC--CCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc-
Q 003956 108 QRNLVYIIG--LPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL- 184 (784)
Q Consensus 108 QRNLVYV~G--LP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L- 184 (784)
..+.|||+| |+..+++++|. ++|++||+|.+|.|.+ .+++|||+|.+.+||.+||++|||..+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~---~~F~~~G~V~~v~~~~-----------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLL---PVLEKCGLVDALLMPP-----------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHH---HHHHTTSCEEEEECCT-----------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHH---HHHHhcCCeEEEEEeC-----------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 346899987 68899988876 7999999999988753 145899999999999999999999988
Q ss_pred --CCc--eEEEeecCC
Q 003956 185 --DGR--PLRACFGTT 196 (784)
Q Consensus 185 --dGR--vLRASfGTT 196 (784)
.|+ +|.++|...
T Consensus 83 ~~~g~~~~ly~~~~~~ 98 (345)
T 3tht_A 83 DDLGQKITLYLNFVEK 98 (345)
T ss_dssp CTTSCEEECEEEECSS
T ss_pred cccCCceEEEEEEeec
Confidence 355 688898754
No 205
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=9.9e-10 Score=97.66 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=54.3
Q ss_pred CCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCceEEEeecCCcc
Q 003956 119 INLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 198 (784)
Q Consensus 119 ~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvLRASfGTTKY 198 (784)
..+++++|. ++|++||+|..|.|.+. ++++|||+|.+.++|.+||+.++| +.||+|+|.|+..+.
T Consensus 27 ~~~te~~L~---~~F~~~G~V~~v~i~~~----------~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLL---RLLQKYGEVLNLVLSSK----------KPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHH---HHHHTTSCEEEEEEESS----------SSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHH---HHHHhcCCEEEEEEccC----------CCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 456777765 79999999999999831 367899999999999999999655 689999999987653
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.81 E-value=6.8e-09 Score=100.60 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=54.6
Q ss_pred HhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCceEEEeecC
Q 003956 131 EYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT 195 (784)
Q Consensus 131 EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvLRASfGT 195 (784)
+.|++||+|.+|.|.++..+... ....+|++||+|.+.++|.+||++|||..++||+|+|.|..
T Consensus 148 ~e~~~~G~v~~~~v~~~~~~~~~-~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 148 EECGKFGAVNRVIIYQEKQGEEE-DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHTTTSCEEEEEEEEEECCSST-TCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHccCCeEEEEEecCCCCccc-CcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 79999999999999876544321 12357899999999999999999999999999999999964
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=3.7e-08 Score=87.92 Aligned_cols=54 Identities=13% Similarity=0.345 Sum_probs=49.6
Q ss_pred HhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCceEEEeecCCcc
Q 003956 131 EYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 198 (784)
Q Consensus 131 EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvLRASfGTTKY 198 (784)
+.|.+||+|+.|+|..++ +||||.+.++|.+||. |||+.+.||.|||.+.++..
T Consensus 34 ~~F~~~G~Vi~vr~~~d~-------------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 34 QQFASFGEVILIRFVEDK-------------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPSG 87 (91)
T ss_dssp HHHHTTCCEEEEEECSSS-------------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCSS
T ss_pred HHHHhCCCeEEEEEecCC-------------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCCc
Confidence 799999999999988642 8999999999999999 99999999999999988753
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1.6e-07 Score=87.17 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=66.3
Q ss_pred CCCCccccccCeEEEeCCCCC-CChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCC-HHHHHHHHH
Q 003956 100 HLTNVRVIQRNLVYIIGLPIN-LADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR-EDDAIRCIQ 177 (784)
Q Consensus 100 ~La~VRVIQRNLVYV~GLP~~-IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~-kEDA~kAI~ 177 (784)
|...+-...--+|||+||++. ++.++|. ++|.+||+|.-|.+.++.. .|||.|.+ .++|..||.
T Consensus 9 ~~~~~~~~~G~il~v~~l~~~~~sredLk---e~F~~~G~V~~Vd~~~g~~-----------tgfVrf~~~~~~A~~av~ 74 (121)
T 1owx_A 9 HHGSLEEKIGCLLKFSGDLDDQTCREDLH---ILFSNHGEIKWIDFVRGAK-----------EGIILFKEKAKEALGKAK 74 (121)
T ss_dssp CCCCCSCCCCCEEEEEESCCSSCCHHHHH---HHTCSSCCEEEEECCTTCS-----------EEEEEESSCHHHHHHHHH
T ss_pred ccCcccccCCeEEEEecCCCCcCCHHHHH---HHHHhcCCEEEEEEecCCC-----------EEEEEECCChHHHHHHHH
Confidence 334445556678999999999 8888875 7999999999999986542 49999999 899999999
Q ss_pred Hh--CCCccCCceEEEee
Q 003956 178 SV--HSYILDGRPLRACF 193 (784)
Q Consensus 178 aL--DG~~LdGRvLRASf 193 (784)
++ +|.+|.|..+++..
T Consensus 75 ~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 75 DANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp HTTTSCBCTTSSSEEEEE
T ss_pred HhhcCCcEEeCcEEEEEE
Confidence 99 47889998888764
No 209
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=5e-07 Score=81.27 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=55.9
Q ss_pred CeEEEeCCCCC-----CChHHHHH-HHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 003956 110 NLVYIIGLPIN-----LADEDLLQ-RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (784)
Q Consensus 110 NLVYV~GLP~~-----IAeEDLLR-~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~ 183 (784)
-+|.|.-+++. .-+++|.- -.+.|.+||+|+.|+|..++ +||||.+.++|.+||. |||..
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------------EEEECSCSHHHHHHHH-GGGSE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------------EEEEEcChHHHHHHHh-cCCee
Confidence 46777766532 33333211 13799999999999988552 8999999999999998 99999
Q ss_pred cCCceEEEeecC
Q 003956 184 LDGRPLRACFGT 195 (784)
Q Consensus 184 LdGRvLRASfGT 195 (784)
+.||.||+.+-+
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998743
No 210
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.4e-06 Score=72.95 Aligned_cols=60 Identities=23% Similarity=0.551 Sum_probs=47.4
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~ 66 (784)
+++..||+|++.|+..+....-.+||+.+|..|+.++++. ......||-||+++....+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS---SINGVRCPFCSKITRITSLT 72 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHH---CSSCBCCTTTCCCBCCSSTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHc---CCCCcCCCCCCCcccchhHH
Confidence 3457899999999877665666689999999999998752 22357999999998876554
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=2.2e-05 Score=72.86 Aligned_cols=69 Identities=10% Similarity=0.210 Sum_probs=61.3
Q ss_pred CeEEEeCCCCCCChHHHHHHHHhhccC-----CceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 110 NLVYIIGLPINLADEDLLQRKEYFGQY-----GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 110 NLVYV~GLP~~IAeEDLLR~~EyFGQY-----GKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
.+|-+-|||..+.+..+. .+...| |.|.||++..+.. +|.|.|.+...|.+|..+|||.++
T Consensus 22 rtiaL~~ipDtvndarIr---~lve~~~~i~~g~i~KI~L~pDH~-----------GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLIC---QFLQEEIHINEKDIRKILLVSDFN-----------GAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp SCEEEECCCTTCCHHHHH---HHHHHHTCCCTTTCSEEEEETTTT-----------EEEEECSCHHHHHHHHHHHSSEEE
T ss_pred cEEEEecCCCCCCHHHHH---HHHhhhhccCccceeEEEEecCCC-----------ceEEEEccchhhHHHHhhcCCeee
Confidence 457889999999998876 688888 9999999886542 499999999999999999999999
Q ss_pred CCceEEEe
Q 003956 185 DGRPLRAC 192 (784)
Q Consensus 185 dGRvLRAS 192 (784)
+||+||+.
T Consensus 88 ~gr~Lr~g 95 (117)
T 2l9w_A 88 QGKVIRSG 95 (117)
T ss_dssp TTEEEEEE
T ss_pred cCeEEEec
Confidence 99999975
No 212
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.82 E-value=1.1e-05 Score=62.36 Aligned_cols=53 Identities=21% Similarity=0.574 Sum_probs=43.0
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCcccccccc
Q 003956 3 DKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (784)
Q Consensus 3 De~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yd 61 (784)
++++..||+|+++|...+.....-+||+.+|..|+...+.. ...||-||+++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE------GYRCPLCSGPSS 54 (55)
T ss_dssp CSCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH------TCCCTTSCCSSC
T ss_pred CCCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc------CCcCCCCCCcCC
Confidence 45678999999999766666677789999999999888652 378999999763
No 213
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.73 E-value=1.4e-05 Score=68.02 Aligned_cols=49 Identities=31% Similarity=0.764 Sum_probs=37.2
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Y 60 (784)
++..||+|.+.|. |....|| ||+-+|..|+..... ......||-||+++
T Consensus 12 ~~~~C~IC~~~~~--~p~~~~~-CgH~fC~~Ci~~~~~----~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMT--DAVVIPC-CGNSYCDECIRTALL----ESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECS--SCEECTT-TCCEECHHHHHHHHH----HCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhc--CceECCC-CCCHHHHHHHHHHHH----hcCCCcCcCCCCcC
Confidence 4578999999984 4444432 999999999988764 12346999999997
No 214
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.73 E-value=1.9e-05 Score=65.38 Aligned_cols=56 Identities=21% Similarity=0.546 Sum_probs=43.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~ 66 (784)
+++..||+|++.|+..+ .....+||+.+|..|..+.+. ....||-||+++....+.
T Consensus 13 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLE------QHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTS-CEEECTTSCEEETTTTHHHHT------TTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCC-CEEEeCCCCeecHHHHHHHHH------cCCcCcCcCCccCCcccC
Confidence 34679999999997544 333446999999999988763 347899999999877654
No 215
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.71 E-value=1.1e-05 Score=65.30 Aligned_cols=58 Identities=19% Similarity=0.627 Sum_probs=45.1
Q ss_pred cccCCCCCCcccCCCcc---CCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 003956 3 DKAEKTCPLCAEEMDLT---DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (784)
Q Consensus 3 De~d~~CPLC~EelD~t---D~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~ 66 (784)
.+++..||+|++.|+.. +....-.+||+.+|..|+.+.+. ....||-||+++..+.+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRYH 67 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH------HCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH------cCCCCCCCCCccChhhee
Confidence 45678999999998643 33445668999999999988864 246999999999877653
No 216
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.69 E-value=1.9e-05 Score=63.48 Aligned_cols=57 Identities=25% Similarity=0.599 Sum_probs=43.3
Q ss_pred cCCCCCCccc-CCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 003956 5 AEKTCPLCAE-EMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (784)
Q Consensus 5 ~d~~CPLC~E-elD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~ 66 (784)
++..||+|.+ .+.-....+..-+||+.+|..|+.+... .....||-||+++....+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-----RGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH-----TTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH-----cCCCcCCCCCCccccccce
Confidence 4678999999 6644333334458999999999998853 2357899999999877664
No 217
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=1.8e-05 Score=64.39 Aligned_cols=54 Identities=30% Similarity=0.685 Sum_probs=40.6
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
++..||+|.+.|. |.... +||+.+|..|+...++ .......||-||+++..+.+
T Consensus 19 ~~~~C~IC~~~~~--~~~~~--~CgH~fC~~Ci~~~~~---~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 19 EEVICPICLDILQ--KPVTI--DCGHNFCLKCITQIGE---TSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCBCTTTCSBCS--SEEEC--TTCCEEEHHHHHHHCS---SSCSCCCCSSSCCCCCCCCC
T ss_pred cCCEeccCCcccC--CeEEc--CCCChhhHHHHHHHHH---cCCCCCCCCCCCCcCCcccC
Confidence 4579999999985 33333 8999999999998853 12346689999999876543
No 218
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.67 E-value=1.2e-05 Score=63.37 Aligned_cols=56 Identities=21% Similarity=0.637 Sum_probs=44.3
Q ss_pred cCCCCCCcccCCCcc---CCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 003956 5 AEKTCPLCAEEMDLT---DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (784)
Q Consensus 5 ~d~~CPLC~EelD~t---D~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~ 66 (784)
++..||+|++.+... +......+||+.+|.-|+.+.++. ...||-||+++..+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH------CSBCTTTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc------CCCCCCCCccCCcccee
Confidence 457899999999642 344566799999999999988742 57999999999877653
No 219
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=4.2e-05 Score=63.16 Aligned_cols=57 Identities=33% Similarity=0.721 Sum_probs=43.1
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
++..||+|.+.+. |... .+||+.+|.-|+...+...........||-||+++..+.+
T Consensus 18 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 18 EEVTCPICLELLT--QPLS--LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCTTTCSCCS--SCBC--CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred CCCCCCCCCcccC--Ccee--CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 4579999999984 3322 3799999999999887643223457899999999886544
No 220
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.65 E-value=3.4e-05 Score=63.73 Aligned_cols=57 Identities=28% Similarity=0.698 Sum_probs=41.9
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
++..||+|.+.+. |.. ..+||+.+|..|+........+......||.||+++..+.+
T Consensus 18 ~~~~C~IC~~~~~--~p~--~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 18 EEVTCPICLELLK--EPV--SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp TTTSCTTTCSCCS--SCE--ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred cCCCCcCCChhhC--cce--eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 4579999999984 333 34699999999999887532112346799999999876544
No 221
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=1.9e-05 Score=63.09 Aligned_cols=53 Identities=21% Similarity=0.666 Sum_probs=41.4
Q ss_pred ccCCCCCCcccCCCcc---CCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 4 KAEKTCPLCAEEMDLT---DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 4 e~d~~CPLC~EelD~t---D~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
+++..||+|++.|... +..+...+||+.+|.-|+...+.. ...||-||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc------CCCCCCCCCccCc
Confidence 4567999999998643 334456689999999999988642 5789999998753
No 222
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.57 E-value=4.1e-05 Score=59.23 Aligned_cols=51 Identities=20% Similarity=0.485 Sum_probs=38.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccc
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Y 60 (784)
+++..||+|+++|+..+.....-.||+.+|.-|....+. ....||-||+++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~------~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG------SHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT------TCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH------cCCcCcCCCCEe
Confidence 456899999999976554433325999999888877642 367899999975
No 223
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.57 E-value=2e-05 Score=65.08 Aligned_cols=53 Identities=19% Similarity=0.522 Sum_probs=40.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee 63 (784)
+++..||+|+++|+..+ .....+||+.+|.-|..+.+. .+..||-||+++...
T Consensus 21 ~~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~------~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLK------ANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHH------HCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHH------cCCcCcCcCCcCCCC
Confidence 45678999999997544 444556999999999888764 246899999988653
No 224
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.54 E-value=4.9e-05 Score=61.49 Aligned_cols=53 Identities=17% Similarity=0.524 Sum_probs=39.8
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee 63 (784)
+++..||+|++.|+..+ .....+||+.+|..|....+.. ...||-||+++...
T Consensus 12 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGE-DVRRLPCMHLFHQVCVDQWLIT------NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSS-CEEECTTSCEEEHHHHHHHHHH------CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCC-cEEEeCCCCHHHHHHHHHHHHc------CCCCcCcCccccCc
Confidence 34578999999996433 3444579999999999887642 46799999987643
No 225
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=5.9e-05 Score=61.76 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=39.6
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
+++..||+|+++|...+ ...-.+||+.+|.-|+...+.. ...||-||+++.+
T Consensus 13 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~f~~~Ci~~~~~~------~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRD-ELGICPCKHAFHRKCLIKWLEV------RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSS-CEEEETTTEEEEHHHHHHHHHH------CSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCC-cEEEcCCCCEecHHHHHHHHHc------CCcCCCcCccccc
Confidence 34679999999996443 3444579999999998887642 4589999998754
No 226
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=3.3e-05 Score=63.20 Aligned_cols=52 Identities=17% Similarity=0.394 Sum_probs=39.6
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
+++..||+|++.|. |.... +||+.+|..|+.+.+. ....||-||+++....+
T Consensus 13 ~~~~~C~IC~~~~~--~~~~~--~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCV--HPVSL--PCKHVFCYLCVKGASW------LGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCS--SEEEE--TTTEEEEHHHHHHCTT------CSSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccC--CCEEc--cCCCHHHHHHHHHHHH------CCCcCcCcCchhCHhhc
Confidence 45678999999983 33333 6999999999987642 34799999999876654
No 227
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=3.2e-05 Score=62.70 Aligned_cols=54 Identities=19% Similarity=0.433 Sum_probs=41.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchhcc
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~~~ 68 (784)
+++..||+|++.+.. ..-+||+.+|..|+.+.+. ....||-||+++......+.
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD------RHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC------CCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH------CcCcCCCcCCcccCCCcccc
Confidence 345799999999853 4456899999999988742 47899999999887655444
No 228
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.37 E-value=6.2e-05 Score=61.52 Aligned_cols=53 Identities=19% Similarity=0.444 Sum_probs=42.0
Q ss_pred CcccCCCCCCcccCCCccCCCccccCCCCh-hhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 2 SDKAEKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 2 sDe~d~~CPLC~EelD~tD~~f~PC~CGYQ-IC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
+.+++..|++|++.. .|..|..-+||+. +|..|..++.. .+..||-||+++..
T Consensus 4 ~~~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 4 PLNAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKK------RNKPCPVCRQPIQM 57 (64)
T ss_dssp -CGGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHH------TTCCCTTTCCCCCE
T ss_pred CCCCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHH------cCCcCCCcCcchhc
Confidence 456788999999986 4556665568999 79999999864 36789999998864
No 229
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.37 E-value=8.2e-05 Score=65.66 Aligned_cols=59 Identities=19% Similarity=0.509 Sum_probs=41.3
Q ss_pred ccCCCCCCcccCCCccC--------------CCccccCCCChhhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 003956 4 KAEKTCPLCAEEMDLTD--------------QQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD--------------~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee 63 (784)
..+..||||+++|...+ ....--+||+.+|.-|....+.... ......||-||+.|.+.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-CCCCCcCCCCCCccCCC
Confidence 34578999999995432 1112457999999999988763211 12467899999999764
No 230
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.34 E-value=8.2e-05 Score=66.02 Aligned_cols=49 Identities=24% Similarity=0.579 Sum_probs=37.7
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
++..||+|.+.|. |.... +||+.+|..|+.+..+ .....||-||+++..
T Consensus 14 ~~~~C~iC~~~~~--~p~~~--~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILV--EPVTL--PCNHTLCKPCFQSTVE-----KASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCS--SCEEC--TTSCEECHHHHCCCCC-----TTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccC--ceeEc--CCCCHHhHHHHHHHHh-----HCcCCCCCCCcccCc
Confidence 4578999999984 33333 7999999999988752 235789999999864
No 231
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.32 E-value=0.00014 Score=63.04 Aligned_cols=52 Identities=17% Similarity=0.562 Sum_probs=39.5
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
++..||+|.+.|.. .... -+||+.+|.-|+.+.+. ....||-||+++....+
T Consensus 21 ~~~~C~IC~~~~~~--p~~~-~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~~l 72 (99)
T 2y43_A 21 DLLRCGICFEYFNI--AMII-PQCSHNYCSLCIRKFLS------YKTQCPTCCVTVTEPDL 72 (99)
T ss_dssp HHTBCTTTCSBCSS--EEEC-TTTCCEEEHHHHHHHHT------TCCBCTTTCCBCCGGGC
T ss_pred CCCCcccCChhhCC--cCEE-CCCCCHhhHHHHHHHHH------CCCCCCCCCCcCChhhC
Confidence 35789999999852 2111 37999999999988863 35799999999886543
No 232
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.29 E-value=9.5e-05 Score=69.62 Aligned_cols=49 Identities=22% Similarity=0.607 Sum_probs=37.9
Q ss_pred CCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
+..||+|.+.|.. .....+||+.+|..|+...+. .....||-||+++..
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALR-----SGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHH-----TTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHH-----hCcCCCCCCCCcCCC
Confidence 3589999999852 222249999999999998864 236789999999854
No 233
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.28 E-value=8.2e-05 Score=64.14 Aligned_cols=52 Identities=25% Similarity=0.540 Sum_probs=39.8
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
+++..||+|+++|...+ .....+||+.+|.-|....+. ....||-||+++..
T Consensus 38 ~~~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~------~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGD-VATELPCHHYFHKPCVSIWLQ------KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTC-EEEEETTTEEEEHHHHHHHHT------TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCC-cEEecCCCChHHHHHHHHHHH------cCCcCcCcCccCCC
Confidence 35678999999997544 344467999999999887753 35799999998754
No 234
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.00017 Score=58.06 Aligned_cols=52 Identities=21% Similarity=0.594 Sum_probs=40.0
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
++..||+|.+.+. |... .+||+.+|..|+.+.++ .....||-||+++..+.+
T Consensus 14 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLC--SPKQ--TECGHRFCESCMAALLS-----SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEES--SCCC--CSSSCCCCHHHHHHHHT-----TSSCCCTTTCCCCCTTTC
T ss_pred cCCCCCCCChHhc--CeeE--CCCCCHHHHHHHHHHHH-----hCcCCCCCCCcCCChhhc
Confidence 4568999999984 3322 48999999999998863 346789999999877643
No 235
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.18 E-value=0.00036 Score=63.79 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=63.5
Q ss_pred CeEEEeCCCCCC-ChHHHHHH-HHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003956 110 NLVYIIGLPINL-ADEDLLQR-KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (784)
Q Consensus 110 NLVYV~GLP~~I-AeEDLLR~-~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~LdGR 187 (784)
|.++|.+|+.++ ..+++..+ .++|.+|+++......+.-. .+-|.|.+.++|.+|-..|||+.+.|+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-----------Rirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-----------RVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-----------EEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-----------EEEEEeCChHHHHHHHHHhccceecCc
Confidence 778999998876 44444222 58999999999988876542 378999999999999999999999999
Q ss_pred eEEEeecC
Q 003956 188 PLRACFGT 195 (784)
Q Consensus 188 vLRASfGT 195 (784)
.||+-||.
T Consensus 75 ~~r~YFgq 82 (104)
T 1wey_A 75 EMKLYFAQ 82 (104)
T ss_dssp ECEEECCC
T ss_pred eeEEEecC
Confidence 99999997
No 236
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.00024 Score=58.29 Aligned_cols=53 Identities=17% Similarity=0.388 Sum_probs=40.2
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~ 66 (784)
++..||+|++.|.. ....-+||+.+|..|....++. ...||-||+++....+.
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY------SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH------CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc------CCcCCCcCcccCccccc
Confidence 45789999999853 2222379999999999887642 57999999999876543
No 237
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.14 E-value=0.00013 Score=67.18 Aligned_cols=50 Identities=28% Similarity=0.688 Sum_probs=38.2
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEK 64 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~ 64 (784)
++..||+|++.|. |.. -.+||+.+|..|....++ ....||-||+++....
T Consensus 52 ~~~~C~iC~~~~~--~~~--~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFI--EAV--TLNCAHSFCSYCINEWMK------RKIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCS--SEE--EETTSCEEEHHHHHHHTT------TCSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccC--Cce--ECCCCCCccHHHHHHHHH------cCCcCCCCCCcCCCCC
Confidence 4568999999983 333 347999999999887753 3578999999986543
No 238
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.13 E-value=0.00024 Score=57.12 Aligned_cols=50 Identities=20% Similarity=0.610 Sum_probs=37.8
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
+++..||+|.+.+. |. ...-+||+.+|..|..+.+. ....||-||+++..
T Consensus 3 ~~~~~C~IC~~~~~--~~-~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS--NY-SMALPCLHAFCYVCITRWIR------QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC--SC-EEETTTTEEESTTHHHHHHH------HSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--CC-cEecCCCCeeHHHHHHHHHh------CcCcCcCCChhhHh
Confidence 34679999999985 22 13346899999999988764 24789999998864
No 239
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.10 E-value=0.00025 Score=60.10 Aligned_cols=57 Identities=21% Similarity=0.463 Sum_probs=42.1
Q ss_pred cccCCCCCCcccCCCc-----------cCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 3 DKAEKTCPLCAEEMDL-----------TDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 3 De~d~~CPLC~EelD~-----------tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
|.++..|++|+++|+. .|......+||+.+|.-|..+-+. .+..||-||+++....+
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK------QNNRCPLCQQDWVVQRI 79 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT------TCCBCTTTCCBCCEEEE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH------hCCCCCCcCCCcchhhc
Confidence 4567789999999964 233444447999999999887753 35689999999876543
No 240
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.09 E-value=0.00078 Score=58.80 Aligned_cols=55 Identities=20% Similarity=0.612 Sum_probs=41.1
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~ 66 (784)
++..||+|.+.+. |... .+||+.+|.-|..+.+.. ......||-||+++....+.
T Consensus 20 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 20 KILECPICLELIK--EPVS--TKCDHIFCKFCMLKLLNQ---KKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HHTSCSSSCCCCS--SCCB--CTTSCCCCSHHHHHHHHS---SSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCCcccChhhc--CeEE--CCCCCHHHHHHHHHHHHh---CCCCCCCcCCCCcCCHhhcC
Confidence 3568999999884 3333 479999999999988641 22335899999999877654
No 241
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.08 E-value=0.00033 Score=63.00 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=38.1
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
++..||+|++.|. |... .+||+.+|..|+.+.+. .....||-||+++..
T Consensus 51 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF--RPIT--TVCQHNVCKDCLDRSFR-----AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS--SEEE--CTTSCEEEHHHHHHHHH-----TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc--CcEE--eeCCCcccHHHHHHHHh-----HCcCCCCCCCccCCC
Confidence 4578999999985 3222 37999999999988764 234589999999976
No 242
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.04 E-value=0.0003 Score=61.63 Aligned_cols=55 Identities=22% Similarity=0.550 Sum_probs=41.2
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchhc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVG 67 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~~ 67 (784)
++..||+|.+.|. |.. .--+||+.+|..|+...+.. ....||-||+++..+.+..
T Consensus 21 ~~~~C~IC~~~~~--~p~-~~~~CgH~FC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 21 EVFRCFICMEKLR--DAR-LCPHCSKLCCFSCIRRWLTE-----QRAQCPHCRAPLQLRELVN 75 (100)
T ss_dssp HHTBCTTTCSBCS--SEE-ECTTTCCEEEHHHHHHHHHH-----TCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCccCCcccc--Ccc-ccCCCCChhhHHHHHHHHHH-----CcCCCCCCCCcCCHHHhHh
Confidence 4578999999995 222 21479999999999888642 1268999999998776543
No 243
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.03 E-value=0.0002 Score=58.83 Aligned_cols=58 Identities=29% Similarity=0.668 Sum_probs=40.6
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhh-ccCCCCCCccccccccccch
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAE-KDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~-k~~~~grCPACRr~Ydee~i 65 (784)
+++..||+|.+.|. |... .+||+.+|.-|+.+.++... .......||-||+++....+
T Consensus 10 ~~~~~C~IC~~~~~--~p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 10 QEEVTCPICLELLT--EPLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCEETTTTEECS--SCCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred ccCCCCcCCCcccC--CeeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 34678999999984 3222 47999999999987753100 00236799999999876544
No 244
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.03 E-value=0.0011 Score=61.90 Aligned_cols=67 Identities=24% Similarity=0.374 Sum_probs=54.9
Q ss_pred ccccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 003956 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (784)
Q Consensus 106 VIQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~Ld 185 (784)
.....-|.|-|.|+..+ ..+|+ +|.+||.|++.... . .+...+|+|.++.+|.+|+.. ||..++
T Consensus 21 ~~~~~wVtVFGFp~~~~-~~VL~---~F~~~G~Iv~~~~~---~--------~~NWihI~Y~s~~~A~rAL~k-NG~ii~ 84 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQASA-SYILL---QFAQYGNILKHVMS---N--------TGNWMHIRYQSKLQARKALSK-DGRIFG 84 (119)
T ss_dssp CGGGGEEEEECCCGGGH-HHHHH---HHHTTSCEEEEEEC---S--------SSSEEEEEESSHHHHHHHHTT-TTCEET
T ss_pred CCCCCEEEEECCCHHHH-HHHHH---HHHhhCcEEEeccC---C--------CCCeEEEEeCCHHHHHHHHHh-CCeEec
Confidence 44578899999999975 56784 99999999999862 1 133799999999999999987 999998
Q ss_pred Cce
Q 003956 186 GRP 188 (784)
Q Consensus 186 GRv 188 (784)
|..
T Consensus 85 g~~ 87 (119)
T 1wwh_A 85 ESI 87 (119)
T ss_dssp TTE
T ss_pred CCE
Confidence 644
No 245
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.99 E-value=0.00071 Score=55.85 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=40.2
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
++..||+|.+.|. |-.. .+||+-+|.-|..+.++ .....||-||+++....+
T Consensus 7 ~~~~C~IC~~~~~--~Pv~--~~CgH~fc~~Ci~~~~~-----~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 7 EYFRCPISLELMK--DPVI--VSTGQTYERSSIQKWLD-----AGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp SSSSCTTTSCCCS--SEEE--ETTTEEEEHHHHHHHHT-----TTCCBCTTTCCBCSSCCC
T ss_pred ccCCCCCcccccc--CCEE--cCCCCeecHHHHHHHHH-----HCcCCCCCCcCCCChhhC
Confidence 4679999999984 3222 47999999999988763 236789999999986654
No 246
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.00039 Score=58.05 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=36.7
Q ss_pred CCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCcccccccc
Q 003956 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (784)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yd 61 (784)
+..||+|.+.|. |.. -.+||+.+|..|+...+. ....||-||+++.
T Consensus 15 ~~~C~IC~~~~~--~p~--~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQ--NPV--VTKCRHYFCESCALEHFR------ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCC--SEE--ECTTSCEEEHHHHHHHHH------HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhc--Cee--EccCCCHhHHHHHHHHHH------CCCcCCCcCcccc
Confidence 458999999983 333 257999999999988864 2578999999986
No 247
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.92 E-value=0.00058 Score=58.89 Aligned_cols=60 Identities=27% Similarity=0.649 Sum_probs=42.6
Q ss_pred cCCCCCCcccCCCccCCCcccc-CCCChhhhhhHHHHHHhhhccC--CCCCCcc--cccc--ccccchh
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPC-NCGYEICVWCWNHIMEMAEKDG--TEGRCPA--CRTA--YDKEKIV 66 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC-~CGYQIC~fC~~~I~~~~~k~~--~~grCPA--CRr~--Ydee~i~ 66 (784)
+...||+|++++.. ..+... +||+..|.-||...++..-++. ..-+||. ||.. ...+.+.
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 4 GSSGCKLCLGEYPV--EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp SBCCCSSSCCCCBG--GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCcCCcccCccccc--ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 46789999999853 333333 6999999999987765332222 3458999 9998 7766654
No 248
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.90 E-value=0.0011 Score=56.91 Aligned_cols=51 Identities=20% Similarity=0.085 Sum_probs=40.0
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
++..||||.+.| +|-...| ||+-+|+-|..+.++ .++.||.||.++..+.+
T Consensus 13 ~~~~CpI~~~~m--~dPV~~~--cGhtf~r~~I~~~l~------~~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 13 DEFRDPLMDTLM--TDPVRLP--SGTVMDRSIILRHLL------NSPTDPFNRQMLTESML 63 (85)
T ss_dssp TTTBCTTTCSBC--SSEEECT--TSCEEEHHHHHHHHH------HCSBCTTTCCBCCGGGC
T ss_pred hheECcccCchh--cCCeECC--CCCEECHHHHHHHHh------cCCCCCCCcCCCChHhc
Confidence 356899999999 4555555 899999999877764 25899999999987654
No 249
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.89 E-value=0.00049 Score=56.93 Aligned_cols=50 Identities=26% Similarity=0.573 Sum_probs=37.4
Q ss_pred cCCCCCCcccCCCccCCCccccC-CCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCN-CGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~-CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
++..||+|.+.|. |... .+ ||+.+|..|+...+.. .....||-||+++..
T Consensus 14 ~~~~C~IC~~~~~--~p~~--~~~CgH~fC~~Ci~~~~~~----~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMT--DAVV--IPCCGNSYCDECIRTALLE----SDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCT--TCEE--CSSSCCEECTTHHHHHHHH----SSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHh--CCeE--cCCCCCHHHHHHHHHHHHh----cCCCcCCCCCCcCCC
Confidence 4579999999985 3322 56 9999999999888742 224689999997543
No 250
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.88 E-value=0.00029 Score=62.37 Aligned_cols=58 Identities=19% Similarity=0.622 Sum_probs=44.7
Q ss_pred ccCCCCCCcccCCCcc---CCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchhc
Q 003956 4 KAEKTCPLCAEEMDLT---DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVG 67 (784)
Q Consensus 4 e~d~~CPLC~EelD~t---D~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~~ 67 (784)
.++..||+|.+.|+.. +....-.+||+.+|..|+.+.++ ....||.||+++....+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT------TCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH------hCCCCCCCCCcCccccccc
Confidence 3468999999999543 23336679999999999988863 3469999999998776643
No 251
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.88 E-value=0.00035 Score=56.89 Aligned_cols=51 Identities=22% Similarity=0.539 Sum_probs=39.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCh-hhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQ-IC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
+.+..|++|++.. .|..+.--+||+. +|..|..++.+ .++.||-||+++..
T Consensus 5 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKK------AGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHH------TTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHH------hCCcCCCcCchhhc
Confidence 4567999999976 4445554578998 89999999864 35899999998864
No 252
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.86 E-value=0.00035 Score=58.16 Aligned_cols=44 Identities=27% Similarity=0.662 Sum_probs=34.8
Q ss_pred CCCCCCcccCCCccCCCccccCCCCh-hhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 003956 6 EKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (784)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQ-IC~fC~~~I~~~~~k~~~~grCPACRr~Ydee 63 (784)
+..||+|++.+ .|..+. +||+. +|..|..++ ..||-||+++...
T Consensus 25 ~~~C~IC~~~~--~~~~~~--pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRN--IAIVFV--PCGHLVTCKQCAEAV----------DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSC--CCBCCS--SSCCCCBCHHHHHHC----------SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCC--CCEEEe--cCCCHHHHHHHhhCC----------CCCccCCceecCc
Confidence 46899999987 455565 57999 899998653 5899999998764
No 253
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.83 E-value=0.00061 Score=58.67 Aligned_cols=57 Identities=19% Similarity=0.485 Sum_probs=44.2
Q ss_pred cccCCCCCCcccCCCccCCCccccCCC---ChhhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 003956 3 DKAEKTCPLCAEEMDLTDQQLKPCNCG---YEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (784)
Q Consensus 3 De~d~~CPLC~EelD~tD~~f~PC~CG---YQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee 63 (784)
++++..|+||.++++..+....||.|. +.+..-|..+=+.. ..+..||-||.+|.-+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~----~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS----SDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH----HCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh----CCCCCCCCCCCeeecC
Confidence 345689999999998878888999993 77778888776542 1246899999999654
No 254
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.78 E-value=0.00083 Score=55.75 Aligned_cols=48 Identities=27% Similarity=0.674 Sum_probs=37.1
Q ss_pred CcccCCCCCCcccCCCccCCCccccCCCCh-hhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 003956 2 SDKAEKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (784)
Q Consensus 2 sDe~d~~CPLC~EelD~tD~~f~PC~CGYQ-IC~fC~~~I~~~~~k~~~~grCPACRr~Ydee 63 (784)
.++++..|++|++.. .|..|.| ||+. +|..|..++ ..||-||+++...
T Consensus 11 ~~~~~~~C~IC~~~~--~~~v~~p--CgH~~~C~~C~~~~----------~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGT--VNWVLLP--CRHTCLCDGCVKYF----------QQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSC--CCCEETT--TTBCCSCTTHHHHC----------SSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCC--CCEEEEC--CCChhhhHHHHhcC----------CCCCCCCcchhce
Confidence 345678999999976 4556655 6888 999998853 5899999988764
No 255
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.71 E-value=0.0012 Score=58.74 Aligned_cols=50 Identities=20% Similarity=0.091 Sum_probs=39.6
Q ss_pred CCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
+..||||.+.| +|-...| ||+-+|+-|..+.++ .++.||-||.++..+.+
T Consensus 29 ~~~CpI~~~~m--~dPV~~~--cGhtf~r~~I~~~l~------~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 29 EFRDPLMDTLM--TDPVRLP--SGTIMDRSIILRHLL------NSPTDPFNRQTLTESML 78 (100)
T ss_dssp TTBCTTTCSBC--SSEEEET--TTEEEEHHHHHHHTT------SCSBCSSSCCBCCTTSS
T ss_pred hhCCcCccCcc--cCCeECC--CCCEEchHHHHHHHH------cCCCCCCCCCCCChhhc
Confidence 46899999999 4555555 899988888877753 36899999999987654
No 256
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.69 E-value=0.00091 Score=63.11 Aligned_cols=50 Identities=22% Similarity=0.482 Sum_probs=38.8
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee 63 (784)
++..||+|.+.|. |... .+||+.+|..|....+. .....||-||.++...
T Consensus 77 ~~~~C~IC~~~~~--~pv~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY--QPVT--TECFHNVCKDCLQRSFK-----AQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS--SEEE--CTTSCEEEHHHHHHHHH-----TTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc--CCEE--cCCCCchhHHHHHHHHH-----hCCCcCCCCCccCCCC
Confidence 3578999999884 3222 58999999999988864 1345899999999876
No 257
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.66 E-value=0.00094 Score=58.72 Aligned_cols=51 Identities=25% Similarity=0.504 Sum_probs=39.1
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee 63 (784)
+++..||+|.+.|. | .....+||+.+|..|+...+. ....||-||+++...
T Consensus 13 ~~~~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--D-ATTIIECLHSFCKTCIVRYLE------TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCS--S-EEEETTTCCEEEHHHHHHHHT------SCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHh--C-cCEeCCCCChhhHHHHHHHHH------hCCcCcCCCcccccc
Confidence 35689999999984 2 222238999999999988763 348999999998764
No 258
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.65 E-value=0.0011 Score=58.93 Aligned_cols=53 Identities=19% Similarity=0.499 Sum_probs=40.8
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~ 66 (784)
++..||+|.+.|. |... .+||+.+|..|+.+.+.. ....||-||+++....+.
T Consensus 22 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 22 KSISCQICEHILA--DPVE--TSCKHLFCRICILRCLKV-----MGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHTBCTTTCSBCS--SEEE--CTTSCEEEHHHHHHHHHH-----TCSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCCcHhc--CcEE--cCCCCcccHHHHHHHHhH-----CcCcCCCCCCCCCHhhcc
Confidence 3578999999984 3222 589999999999988752 256899999999876553
No 259
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.63 E-value=0.00085 Score=53.13 Aligned_cols=47 Identities=21% Similarity=0.523 Sum_probs=35.4
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 3 DKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 3 De~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
++++..||+|.+.+. |.... +||+-+|..|... ....||-||+++.-
T Consensus 3 e~~~~~C~IC~~~~~--~p~~l--~CgH~fC~~Ci~~---------~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAK--CPKLL--PCLHTLCSGCLEA---------SGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCB--CCSCS--TTSCCSBTTTCSS---------SSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccC--CeEEc--CCCCcccHHHHcc---------CCCCCCcCCcEeec
Confidence 456679999999985 33344 5899988888765 25689999998753
No 260
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.63 E-value=0.00057 Score=60.48 Aligned_cols=58 Identities=19% Similarity=0.632 Sum_probs=44.3
Q ss_pred cccCCCCCCcccCCCcc---CCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 003956 3 DKAEKTCPLCAEEMDLT---DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (784)
Q Consensus 3 De~d~~CPLC~EelD~t---D~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~ 66 (784)
++++..||+|.+.|+.. ......++||+.+|..|..+.++ ....||-||+++.++.+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH------HCSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH------cCCCCCCCCCcCChhcce
Confidence 35568899999988642 23335679999999999988764 246899999999887653
No 261
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.57 E-value=0.0015 Score=58.96 Aligned_cols=53 Identities=15% Similarity=0.372 Sum_probs=40.2
Q ss_pred cccCCCCCCcccCCCcc--------------CCCccccCCCChhhhhhHHHHHHhhhccCCCCCCcccccccc
Q 003956 3 DKAEKTCPLCAEEMDLT--------------DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (784)
Q Consensus 3 De~d~~CPLC~EelD~t--------------D~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yd 61 (784)
|-+++.|+||++.|+.. |-.....+||+.++.-|...-+. .+..||-||++|.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~------~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK------TRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT------TCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH------cCCcCcCCCCcce
Confidence 34578999999999754 22344568999988888877653 3678999999875
No 262
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.49 E-value=0.0016 Score=58.39 Aligned_cols=52 Identities=17% Similarity=0.478 Sum_probs=39.6
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
++..||+|.+.|.. . .-.+||+.+|..|+...+.. ....||-||+++....+
T Consensus 17 ~~~~C~IC~~~~~~--p--~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 17 SKYECPICLMALRE--A--VQTPCGHRFCKACIIKSIRD-----AGHKCPVDNEILLENQL 68 (118)
T ss_dssp GGGBCTTTCSBCSS--E--EECTTSCEEEHHHHHHHHHH-----HCSBCTTTCCBCCGGGC
T ss_pred CCCCCCcCChhhcC--e--EECCcCChhhHHHHHHHHhh-----CCCCCCCCCCCcCHHhc
Confidence 45689999999852 2 22479999999999888652 12489999999877544
No 263
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.48 E-value=0.0014 Score=58.65 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=37.5
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEK 64 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~ 64 (784)
++..||+|.+.|. |. ....+||+.+|.-|..+.. ...||-||+++....
T Consensus 21 ~~~~C~IC~~~~~--~p-v~~~~CgH~fC~~Ci~~~~--------~~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 21 KLLRCSRCTNILR--EP-VCLGGCEHIFCSNCVSDCI--------GTGCPVCYTPAWIQD 69 (117)
T ss_dssp HTTSCSSSCSCCS--SC-BCCCSSSCCBCTTTGGGGT--------TTBCSSSCCBCSCSS
T ss_pred hCCCCCCCChHhh--Cc-cEeCCCCCHHHHHHHHHHh--------cCCCcCCCCcCcccc
Confidence 4679999999984 22 3333799999999998874 278999999986543
No 264
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.46 E-value=0.00072 Score=56.37 Aligned_cols=45 Identities=27% Similarity=0.648 Sum_probs=35.8
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCh-hhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQ-IC~fC~~~I~~~~~k~~~~grCPACRr~Ydee 63 (784)
++..|++|++.+ .|..+. +||+. +|..|+.++ ..||-||+++...
T Consensus 23 ~~~~C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRN--IAIVFV--PCGHLVTCKQCAEAV----------DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSB--CCEEEE--TTCCBCCCHHHHTTC----------SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCC--CCEEEc--CCCChhHHHHhhhcC----------ccCCCcCcCccCc
Confidence 457899999987 445555 58999 999997765 6899999988764
No 265
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.43 E-value=0.0031 Score=55.83 Aligned_cols=51 Identities=14% Similarity=0.101 Sum_probs=39.3
Q ss_pred cCCCCCCcccCCCccCCCccccCCC-ChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCG-YEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CG-YQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
++..||||.+.| +|-... +|| +-+|+-|..+.++ .++.||-||.++..+.+
T Consensus 21 ~~~~CpI~~~~m--~dPV~~--~cG~htf~r~cI~~~l~------~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 21 DEFLDPIMSTLM--CDPVVL--PSSRVTVDRSTIARHLL------SDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp TTTBCTTTCSBC--SSEEEC--TTTCCEEEHHHHHHHTT------TSCBCTTTCSBCCTTTS
T ss_pred HhcCCcCccccc--cCCeEC--CCCCeEECHHHHHHHHH------hCCCCCCCCCCCChhhc
Confidence 356899999999 344443 588 9999999887753 26799999999987644
No 266
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.38 E-value=0.0023 Score=50.83 Aligned_cols=45 Identities=29% Similarity=0.731 Sum_probs=33.7
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPAC 56 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPAC 56 (784)
++..||+|.+.|. |... .+||+.+|..|+.+.++. .....+||-|
T Consensus 19 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~---~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ--KPVT--IDCGHNFCLKCITQIGET---SCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS--SCEE--CTTSSEECHHHHHHHHHH---CSSCCCCSCC
T ss_pred cCCCCCcCCchhC--CeEE--eCCCCcchHHHHHHHHHc---CCCCCcCcCC
Confidence 4579999999985 3322 389999999999988742 2245689987
No 267
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.19 E-value=0.0027 Score=59.87 Aligned_cols=52 Identities=19% Similarity=0.490 Sum_probs=40.5
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
++..||+|.+.|.. . .-++||..+|..|+.+.+... ...||.||+++....+
T Consensus 17 ~~~~C~IC~~~~~~--p--v~~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 17 SKYECPICLMALRE--A--VQTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLENQL 68 (170)
T ss_dssp GGGBCTTTCSBCSS--E--EECTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCChhhcC--c--EECCCCCHHHHHHHHHHHHhC-----CCCCCCCccCcchhhh
Confidence 45799999999853 2 337999999999999987521 3499999999877643
No 268
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.11 E-value=0.0015 Score=55.56 Aligned_cols=51 Identities=25% Similarity=0.623 Sum_probs=38.7
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCh-hhhhhHHHHHHhhhccCCCCCCccccccccccchhccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGMA 69 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQ-IC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~~~~ 69 (784)
++..|++|++.+ .|..|. +||+. +|..|..++ ..||-||+++....-.|.+
T Consensus 17 ~~~~C~IC~~~~--~~~v~~--pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 17 EAMLCMVCCEEE--INSTFC--PCGHTVCCESCAAQL----------QSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHTBCTTTSSSB--CCEEEE--TTCBCCBCHHHHTTC----------SBCTTTCCBCCEEEECBCT
T ss_pred CCCEeEEeCccc--CcEEEE--CCCCHHHHHHHHHhc----------CcCCCCCchhhCeEEEEeC
Confidence 357899999976 455565 58998 899998876 2899999998875444443
No 269
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.07 E-value=0.0044 Score=50.70 Aligned_cols=52 Identities=29% Similarity=0.821 Sum_probs=38.2
Q ss_pred CCcccCCCCCCcccCCCccCCCccccCC-C-----ChhhhhhHHHHHHhhhccCCCCCCcccccccc
Q 003956 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNC-G-----YEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (784)
Q Consensus 1 msDe~d~~CPLC~EelD~tD~~f~PC~C-G-----YQIC~fC~~~I~~~~~k~~~~grCPACRr~Yd 61 (784)
|.|+++..|.+|.++.+ +..+.||.| | ++-|+.=|=... .+..||-||.+|.
T Consensus 1 ~e~~~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~-------~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 1 MEDEDVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTIS-------RNTACQICGVVYN 58 (60)
T ss_dssp CTTCSCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHH-------TCSBCTTTCCBCC
T ss_pred CCCCCCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhC-------CCCccCCCCCeee
Confidence 78899999999999854 456899999 3 244554444331 3578999999985
No 270
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.84 E-value=0.0068 Score=46.88 Aligned_cols=45 Identities=27% Similarity=0.637 Sum_probs=33.4
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPAC 56 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPAC 56 (784)
++..||+|.+.+.. ... .+||+.+|..|+.+.+.. ......||-|
T Consensus 14 ~~~~C~IC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~~---~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE--PVI--IECGHNFCKACITRWWED---LERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS--CCC--CSSCCCCCHHHHHHHTTS---SCCSCCCSCC
T ss_pred cCCCCccCCcccCc--cEe--CCCCCccCHHHHHHHHHh---cCCCCCCCCC
Confidence 45799999999953 333 479999999999887531 1356789987
No 271
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.75 E-value=0.0038 Score=61.61 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=38.8
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
++-.||||.+.| +|-...| ||+-+|+-|..+.++. ....||-||.++....+
T Consensus 207 ~~~~c~i~~~~~--~dPv~~~--~gh~f~~~~i~~~~~~-----~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 207 DYLCGKISFELM--REPCITP--SGITYDRKDIEEHLQR-----VGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp STTBCTTTCSBC--SSEEECS--SCCEEETTHHHHHHHH-----TCSSCTTTCCCCCGGGC
T ss_pred cccCCcCcCCHh--cCCeECC--CCCEECHHHHHHHHHH-----CCCCCcCCCCCCchhcC
Confidence 356899999999 4555544 8999999998877642 12339999999976654
No 272
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.73 E-value=0.016 Score=50.43 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=39.3
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCcc--cccc-ccccch
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPA--CRTA-YDKEKI 65 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPA--CRr~-Ydee~i 65 (784)
.++..||||.+.|. |-...| .||+-+|+-|....++...+......||- |++. +..+.+
T Consensus 5 ~~~~~CPI~~~~~~--dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSCCBCTTTCSBCS--SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGE
T ss_pred CcEeECcCcCchhc--CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhC
Confidence 35679999999994 322221 49999999998777653211123468999 9987 555443
No 273
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.69 E-value=0.002 Score=59.41 Aligned_cols=53 Identities=15% Similarity=0.372 Sum_probs=2.0
Q ss_pred cccCCCCCCcccCCCcc--------------CCCccccCCCChhhhhhHHHHHHhhhccCCCCCCcccccccc
Q 003956 3 DKAEKTCPLCAEEMDLT--------------DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (784)
Q Consensus 3 De~d~~CPLC~EelD~t--------------D~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yd 61 (784)
|-+++.|+||+++|+.. |......+||+.+|.-|...-+. ....||-||++|.
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~------~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK------TRQVCPLDNREWE 111 (117)
T ss_dssp CCCC---------------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH------cCCcCCCCCCeee
Confidence 34568999999999642 22334458999988888766542 2578999999874
No 274
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=95.67 E-value=0.013 Score=52.56 Aligned_cols=53 Identities=26% Similarity=0.793 Sum_probs=44.0
Q ss_pred cCCCCCCcccCCCccC--CCcccc-CCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 5 AEKTCPLCAEEMDLTD--QQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD--~~f~PC-~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
....|.+|-+.+-+|. ..|..| .|+|-+|+-||..=+ .+.+-.||.|..+|+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr-----keG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER-----REGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH-----HTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH-----hccCccccccCCcccc
Confidence 3479999999975544 479999 899999999998765 3688999999999974
No 275
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.51 E-value=0.0068 Score=57.53 Aligned_cols=79 Identities=20% Similarity=0.426 Sum_probs=53.9
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEE-EEEeecCC------CCcccCCC--CCcEEEEEeCCHHHHHHHHHHh
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK-VSISRTAT------GDIQHSAN--NSCCVYITYSREDDAIRCIQSV 179 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~K-IvInrdk~------g~~q~~~~--~rgsAYVTFs~kEDA~kAI~aL 179 (784)
..-|-|-|.|+..+ ..+| ++|.+||.|++ +.+.+... ...+..|. .+.-.+|||.++.+|.+|++.
T Consensus 7 e~~VtVFGFp~~~~-~~VI---~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~- 81 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVI---AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE- 81 (132)
T ss_dssp -CEEEEECCCGGGH-HHHH---HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-
T ss_pred ceEEEEEecCHHHH-HHHH---HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-
Confidence 45689999999885 4677 59999999998 32221100 00001111 245689999999999999887
Q ss_pred CCCccCCceEEEe
Q 003956 180 HSYILDGRPLRAC 192 (784)
Q Consensus 180 DG~~LdGRvLRAS 192 (784)
||.+++|..|=|-
T Consensus 82 NG~ii~G~mIGV~ 94 (132)
T 3p3d_A 82 NGAVFNGVLLGVI 94 (132)
T ss_dssp TTCEETTEECEEE
T ss_pred CCeEeCcEEEEEE
Confidence 9999999755543
No 276
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.48 E-value=0.0031 Score=59.03 Aligned_cols=47 Identities=23% Similarity=0.590 Sum_probs=36.5
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Y 60 (784)
++..||+|.+.|.. - .-.+||+.+|..|+.+.+. .....||.||++.
T Consensus 30 ~~~~C~IC~~~~~~--p--v~~~CgH~FC~~Ci~~~~~-----~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRR--P--FQAQCGHRYCSFCLASILS-----SGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSS--E--EECTTSCEEEHHHHHHHGG-----GSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcC--c--EECCCCCccCHHHHHHHHh-----cCCCCCCCCCCcc
Confidence 45699999999842 2 3369999999999998863 1345899999975
No 277
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.43 E-value=0.0068 Score=66.02 Aligned_cols=52 Identities=29% Similarity=0.577 Sum_probs=39.1
Q ss_pred CCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 003956 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (784)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~ 66 (784)
+..||+|++.+. |. .--+||+..|.-|.....+. ....||-||+++....+.
T Consensus 332 ~~~C~ICle~~~--~p--v~lpCGH~FC~~Ci~~wl~~-----~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDK--DV--KIEPCGHLMCTSCLTSWQES-----EGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBC--CE--EEETTCCEECHHHHHHHHHH-----TCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCC--Ce--EEeCCCChhhHHHHHHHHhc-----CCCCCCCCCCccCCceeE
Confidence 368999999983 33 33578999999999877531 367899999998876543
No 278
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.41 E-value=0.0081 Score=54.77 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=51.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHh-CCCccCCceEEEeecCCccccc--------cccCcCCCCCCcccccCCCCCCCCCcHH
Q 003956 159 SCCVYITYSREDDAIRCIQSV-HSYILDGRPLRACFGTTKYCHA--------WIRNMPCSVPDCLYLHDFGSQEDSFTKD 229 (784)
Q Consensus 159 rgsAYVTFs~kEDA~kAI~aL-DG~~LdGRvLRASfGTTKYCs~--------FLRn~~C~N~dCmYLHE~g~~~DsfTKe 229 (784)
.|.++|.|.+.++|.+||+.+ ||..++| .|++.+++.+.-.. -...........+|+--+. ...|.+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~---~~~t~~ 88 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLG---NNGNKT 88 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCC---SCCSCH
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCC---CCCCHH
Confidence 567899999999999999999 9999999 99999876532110 0111122223344444443 456889
Q ss_pred HHHHhhhc
Q 003956 230 EIVSAFTR 237 (784)
Q Consensus 230 Em~~~~tr 237 (784)
||.....+
T Consensus 89 ~l~~~F~~ 96 (150)
T 2i2y_A 89 ELERAFGY 96 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98876655
No 279
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.19 E-value=0.063 Score=47.76 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=51.8
Q ss_pred eEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 111 LVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
.|-|..||+.+++|+++ +.++.++++.-..-...+.... +..-..|||.|.+.|++..-++.+||..+
T Consensus 3 KvVIRrLPP~LteeeF~---~~l~~~~~~d~~~fv~G~~s~~---~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQ---EHLQPMPEHDYFEFFSNDTSLY---PHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp EEEEEEECTTCCHHHHH---HHHCSCCCEEEEEEEESCCSST---TCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHH---HHhcCcccceEEEEeCCccCCC---CCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 57889999999999987 6899988765444333332211 22344799999999999999999999977
No 280
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.89 E-value=0.15 Score=46.82 Aligned_cols=68 Identities=31% Similarity=0.368 Sum_probs=51.7
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhcc-C----CceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQ-Y----GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQ-Y----GKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~ 183 (784)
+..|.|.|||+.+.+| +|. -||.. - |.|..|.... ..|+|||.+.+.|.+-++. .-..
T Consensus 8 ~~~I~V~~lPp~~~~e-~L~--LYFEn~rrsGGG~V~~v~~~~-------------~~AvItF~d~~va~rVL~k-~~H~ 70 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDE-LLT--LYFENRRRSGGGPVLSWQRLG-------------CGGVLTFREPADAERVLAQ-ADHE 70 (104)
T ss_dssp CCEEEEESCCTTSCHH-HHH--HHHHCTTTTCCCCEEEEEEET-------------TEEEEEESSHHHHHHHHTC-SCCB
T ss_pred ccEEEEECCCCCCChh-Hhe--EEEeCCCcCCCceeeEEEEcC-------------CcEEEEEcChHHHHHHhcC-Ccce
Confidence 5789999999999754 554 59977 2 7888887542 2599999999999887665 3467
Q ss_pred cCCceEEEee
Q 003956 184 LDGRPLRACF 193 (784)
Q Consensus 184 LdGRvLRASf 193 (784)
|.|-.|.+.-
T Consensus 71 L~~~~LsV~P 80 (104)
T 2dhx_A 71 LHGAQLSLRP 80 (104)
T ss_dssp SSSSBCEEEE
T ss_pred ecCeEEEEEc
Confidence 7887777753
No 281
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.026 Score=58.86 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=37.9
Q ss_pred CCCCCCcccCCCccCCCcccc-CCCChhhhhhHHHHHHhhhccCCCCCCcc--ccccccccch
Q 003956 6 EKTCPLCAEEMDLTDQQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPA--CRTAYDKEKI 65 (784)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC-~CGYQIC~fC~~~I~~~~~k~~~~grCPA--CRr~Ydee~i 65 (784)
+..||||.+.|. |-- -. .||+-+|+-|.....+ ......||- ||+++....+
T Consensus 181 el~CPIcl~~f~--DPV--ts~~CGHsFcR~cI~~~~~----~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 181 ELTCPITCKPYE--APL--ISRKCNHVFDRDGIQNYLQ----GYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CSBCTTTSSBCS--SEE--EESSSCCEEEHHHHHHHST----TCSCEECSGGGCSCEECGGGE
T ss_pred eeECcCccCccc--CCe--eeCCCCCcccHHHHHHHHH----hCCCCCCCcccccCcCchhhC
Confidence 368999999993 222 12 7999999999887753 224568998 9998876554
No 282
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.41 E-value=0.063 Score=48.93 Aligned_cols=26 Identities=4% Similarity=-0.199 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhCCCc
Q 003956 158 NSCCVYITYSREDDAIRCIQSVHSYI 183 (784)
Q Consensus 158 ~rgsAYVTFs~kEDA~kAI~aLDG~~ 183 (784)
.+|++||+|.+.++|.+|++.+++..
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccC
Confidence 37789999999999999999988643
No 283
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=94.26 E-value=0.017 Score=56.77 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=38.3
Q ss_pred cCCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i 65 (784)
++..||||.+.|. |.... +||+-+|+-|..+.++. . ...||-||.++....+
T Consensus 105 ~~f~CPI~~elm~--DPV~~--~~Ghtfer~~I~~~l~~----~-~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 105 DYLCGKISFELMR--EPCIT--PSGITYDRKDIEEHLQR----V-GHFDPVTRSPLTQDQL 156 (179)
T ss_dssp GGGBCTTTCSBCS--SEEEC--TTSCEEEHHHHHHHHHH----T-CSBCTTTCCBCCGGGC
T ss_pred HhhcccCccccCC--CCeEC--CCCCEECHHHHHHHHHh----C-CCCCCCCcCCCChhhC
Confidence 3568999999994 44444 68999999998777641 1 1259999999977654
No 284
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.08 E-value=0.097 Score=47.75 Aligned_cols=56 Identities=16% Similarity=0.382 Sum_probs=43.3
Q ss_pred cCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 003956 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180 (784)
Q Consensus 109 RNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLD 180 (784)
|.-||+.+.|+++...||+ ++|..||-|.==.|+ +. +|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l~FP~ewKt~DI~---~lFs~fggv~I~Wid-DT------------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHVTFPKEWKTSDLY---QLFSAFGNIQISWID-DT------------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEEECCTTCCHHHHH---HHHTTTCSCCCEEEE-TT------------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhhhHHHH---HHhhccCCEEEEEEc-CC------------eEEEEecCHHHHHHHHHhcc
Confidence 4557777999999999998 599999943322222 21 59999999999999998764
No 285
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.73 E-value=0.062 Score=49.06 Aligned_cols=57 Identities=16% Similarity=0.376 Sum_probs=44.8
Q ss_pred ccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 003956 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180 (784)
Q Consensus 108 QRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLD 180 (784)
.|.-||+.+.|+++...||+ ++|..|| -|.|.=-.+ -+|||.|.+++.|..|+..+.
T Consensus 4 ~R~HV~~l~FP~ewKt~Di~---~lFs~fg---gv~I~WidD----------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 4 GSDHVLHVTFPKEWKTSDLY---QLFSAFG---NIQISWIDD----------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEEEECCTTCCHHHHH---HHTTTSE---EEEEEEEET----------TEEEEEEEEECHHHHHHHHHT
T ss_pred CCCeEEEEeCChhhhhHHHH---HHHhccC---CEEEEEEcC----------CeEEEEecCHHHHHHHHHhcc
Confidence 35667888999999999998 5999999 444432111 159999999999999999864
No 286
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=90.83 E-value=0.12 Score=57.54 Aligned_cols=54 Identities=13% Similarity=0.284 Sum_probs=39.4
Q ss_pred CeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHH
Q 003956 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQ 177 (784)
Q Consensus 110 NLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~ 177 (784)
..|||. .|.++.+.+|+ +||.|||.|.++.+.+++ +.+|-|.|.++++|..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~---~y~~~~g~i~~~~~~~~~----------g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFL---KYLSQFGPINNHFFYESF----------GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHH---HHHGGGSCCCCEEEECSS----------SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHH---HHHHhcCCcceEEEEccC----------CeEEEEEeCCHHHHHHHHh
Confidence 468998 48889999998 699999999999998653 4589999999998885533
No 287
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=89.96 E-value=0.13 Score=41.98 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=39.2
Q ss_pred CCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccccchhc
Q 003956 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVG 67 (784)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~i~~ 67 (784)
..||||.+.|. |-...| +||+-+|+-|..+.++ .++.||-+|.+...+.++.
T Consensus 4 ~~CpIs~~~m~--dPV~~~-~sG~~yer~~I~~~l~------~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPR--RPVLSP-KSRTIFEKSLLEQYVK------DTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCS--SEEEET-TTTEEEEHHHHHHHHH------HHSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCC--CCEEeC-CCCcEEcHHHHHHHHH------hCCCCcCCcCCCChhhcEE
Confidence 57999999995 443322 7899988888877654 2467999999998876653
No 288
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=89.87 E-value=0.56 Score=42.41 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=44.7
Q ss_pred eEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 003956 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (784)
Q Consensus 111 LVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLDG~~L 184 (784)
.|-|..|||.+++|+++ +.++.+=+ +.-..=..|+....+..-..|||.|.+.|+...=.+.+||..+
T Consensus 11 KvVIRrLPP~Ltee~F~---~~l~~~~~---~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLE---EQLRPLPA---HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CEEEECCCSCSCHHHHT---TTTSCCSS---EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eEEEeCCCCCCCHHHHH---HHhCCcCc---cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 46788899999998865 45555433 3221111122111122223699999999999999999999877
No 289
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.61 E-value=0.29 Score=41.86 Aligned_cols=52 Identities=27% Similarity=0.682 Sum_probs=37.7
Q ss_pred ccCCCCCCcccCCCccCCCcccc-CCCChhhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC-~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee 63 (784)
+....|++|.+.+... .-| .|++++=.-|..+-+ +...+..||.||+++.-+
T Consensus 13 ~~i~~C~IC~~~i~~g----~~C~~C~h~fH~~Ci~kWl----~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG----QSCETCGIRMHLPCVAKYF----QSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSS----EECSSSCCEECHHHHHHHS----TTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccC----CccCCCCchhhHHHHHHHH----HhcCCCCCCCCcCcCCCC
Confidence 4568999999999642 235 788877777877765 333457899999987643
No 290
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=86.14 E-value=0.52 Score=51.32 Aligned_cols=60 Identities=18% Similarity=0.423 Sum_probs=38.7
Q ss_pred ccCCCCCCcccCCCccC-CCcccc---CCCChhhhhhHHHHHHhhhc-----cCCCCCCcccccccccc
Q 003956 4 KAEKTCPLCAEEMDLTD-QQLKPC---NCGYEICVWCWNHIMEMAEK-----DGTEGRCPACRTAYDKE 63 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD-~~f~PC---~CGYQIC~fC~~~I~~~~~k-----~~~~grCPACRr~Ydee 63 (784)
|+..+|+||++.+...+ ..-+.| +||..+-.-|...=.+...+ +-.-|.||-||++..-+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 35579999999986423 233568 59988777777654432111 11238899999977643
No 291
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=79.25 E-value=1.5 Score=44.54 Aligned_cols=52 Identities=27% Similarity=0.647 Sum_probs=40.1
Q ss_pred cCCCCCCcccCCCccCCCccccC-CCChhhhhhHHHHHHhhhccCCCCCCccccccccccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPCN-CGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEK 64 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC~-CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee~ 64 (784)
.-..|.+|.+-+-. -+-|+ |+.++=..|..+.. +...+.+||.|+.++..+.
T Consensus 179 ~i~~C~iC~~iv~~----g~~C~~C~~~~H~~C~~~~~----~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 179 AVKICNICHSLLIQ----GQSCETCGIRMHLPCVAKYF----QSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TCCBCTTTCSBCSS----CEECSSSCCEECHHHHHHHT----TTCSSCBCTTTCCBCCSCC
T ss_pred CCCcCcchhhHHhC----CcccCccChHHHHHHHHHHH----HhCCCCCCCCCCCCCCCCC
Confidence 45789999999853 36675 88888888998875 3445679999999886653
No 292
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=70.40 E-value=1.3 Score=37.05 Aligned_cols=26 Identities=31% Similarity=0.705 Sum_probs=21.0
Q ss_pred cCCccccccccCcCCCCCCcccccCCC
Q 003956 194 GTTKYCHAWIRNMPCSVPDCLYLHDFG 220 (784)
Q Consensus 194 GTTKYCs~FLRn~~C~N~dCmYLHE~g 220 (784)
+.+.-|..||+| .|.+++|.|+|.+.
T Consensus 40 ~~~~vC~~flkG-~C~r~~C~y~H~~~ 65 (70)
T 3d2q_A 40 NTVTVCMDYIKG-RCSREKCKYFHPPA 65 (70)
T ss_dssp TEEEBCHHHHTT-CCCCTTCCSBCCCH
T ss_pred CcceeccccCcC-CCCCCCcCeeCCHH
Confidence 344569899996 79999999999753
No 293
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=66.99 E-value=0.5 Score=43.14 Aligned_cols=41 Identities=27% Similarity=0.657 Sum_probs=33.1
Q ss_pred CCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
..||.|--+|+.++ ||..|..|-..+. ..++||-|..+...
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~f~-------~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEFIE-------MKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCEEE-------EEEECTTTCSBCEE
T ss_pred ccCccCCCcceecC--------CEEECccccchhh-------ccccCcchhhHHHH
Confidence 68999999998754 5666888887774 47899999998864
No 294
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=63.73 E-value=11 Score=42.09 Aligned_cols=58 Identities=17% Similarity=0.401 Sum_probs=44.2
Q ss_pred cccCeEEEeCCCCCCChHHHHHHHHhhccCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 003956 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180 (784)
Q Consensus 107 IQRNLVYV~GLP~~IAeEDLLR~~EyFGQYGKI~KIvInrdk~g~~q~~~~~rgsAYVTFs~kEDA~kAI~aLD 180 (784)
..|..||+.++|..+...+|. +.|..||.| .|..-. .-+|||.|.+.+.|..+++++.
T Consensus 437 ~~R~~vl~v~f~~~~~~~~i~---~~fs~fg~v---~V~wid----------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 437 PKRDHVLHVTFPKEWKTSDLY---QLFSAFGNI---QISWID----------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CCGGGEEEEECCTTCCHHHHH---HHGGGGCCC---EEEECS----------SSEEEEECSCHHHHHHHHHHHT
T ss_pred CCcCcEEEEeCCCCCCHHHHH---HHHHhcCCE---EEEEEc----------CCeEEEEECCHHHHHHHHHHHH
Confidence 345668888899999988887 599999943 332211 1259999999999999999885
No 295
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.72 E-value=2.8 Score=35.54 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=16.3
Q ss_pred ccccccccCcCCCCCCcccccCCCC
Q 003956 197 KYCHAWIRNMPCSVPDCLYLHDFGS 221 (784)
Q Consensus 197 KYCs~FLRn~~C~N~dCmYLHE~g~ 221 (784)
.-|.+||+.-.|.+++|+|+|....
T Consensus 39 ~~C~~f~~~G~C~~~~C~f~H~~~~ 63 (77)
T 2d9n_A 39 PECYFYSKFGECSNKECPFLHIDPE 63 (77)
T ss_dssp CBCHHHHHTCCCCCSSCSSBCCCTT
T ss_pred CCCcccCCCCccCCCCeeccCCCcc
Confidence 4576777755667777777776643
No 296
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=58.71 E-value=2.7 Score=35.51 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=13.3
Q ss_pred ccccccccCcCCCCCCcccccCCC
Q 003956 197 KYCHAWIRNMPCSVPDCLYLHDFG 220 (784)
Q Consensus 197 KYCs~FLRn~~C~N~dCmYLHE~g 220 (784)
.-|.+|+++-.|.+++|.|+|...
T Consensus 45 ~~C~~f~~~G~C~~~~C~y~H~~p 68 (72)
T 2rhk_C 45 SECYFYSKFGECSNKECPFLHIDP 68 (72)
T ss_dssp CBCHHHHHHSCCSBTTCCSBCCCC
T ss_pred CcccccCCCCCCCCCCeeccCCCc
Confidence 345556654455556666666544
No 297
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=58.63 E-value=5.9 Score=36.27 Aligned_cols=47 Identities=17% Similarity=0.400 Sum_probs=34.7
Q ss_pred CCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 8 TCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 8 ~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
.|+.|--++-+ --+--||..-+|.-|...+.. ..+..||.||.+...
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~-----~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEK-----KGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHH-----TTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHh-----ccCCCCcCcCCeeee
Confidence 58889888866 344558889877777766532 357899999998854
No 298
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=58.56 E-value=4.3 Score=35.44 Aligned_cols=23 Identities=35% Similarity=0.813 Sum_probs=19.9
Q ss_pred cccccccCcCCCCC--CcccccCCCC
Q 003956 198 YCHAWIRNMPCSVP--DCLYLHDFGS 221 (784)
Q Consensus 198 YCs~FLRn~~C~N~--dCmYLHE~g~ 221 (784)
.|..||||. |.++ +|.|.|....
T Consensus 11 VCr~FlrG~-C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 11 VCREFQRGT-CSRPDTECKFAHPSKS 35 (83)
T ss_dssp BCTTGGGTC-CCSCTTTCSSBCCCTT
T ss_pred hcHHHhcCC-CCCCCCCCCCcCCCcc
Confidence 599999955 9998 8999999864
No 299
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=57.61 E-value=1.4 Score=38.95 Aligned_cols=41 Identities=24% Similarity=0.660 Sum_probs=32.7
Q ss_pred CCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
..||.|--+|+.+.. |..|..|-..+. .+++||-|.++...
T Consensus 3 ~~CP~C~~~l~~~~~--------~~~C~~C~~~~~-------~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--------TAHCETCAKDFS-------LQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS--------EEECTTTCCEEE-------EEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC--------ceECccccccCC-------CcccCcchhhHHHH
Confidence 689999999987554 666888888773 46799999998865
No 300
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=56.16 E-value=3.4 Score=36.06 Aligned_cols=26 Identities=31% Similarity=0.623 Sum_probs=21.6
Q ss_pred cCCccccccccCcCCCCCCcccccCCC
Q 003956 194 GTTKYCHAWIRNMPCSVPDCLYLHDFG 220 (784)
Q Consensus 194 GTTKYCs~FLRn~~C~N~dCmYLHE~g 220 (784)
+..--|..||||. |.+.+|.|+|-+.
T Consensus 41 ~~~~vC~dflkG~-C~r~~C~y~H~~~ 66 (83)
T 3d2n_A 41 GRVIACFDSLKGR-CSRENCKYLHPPP 66 (83)
T ss_dssp TEEECCHHHHTTC-CCCSSCSSCCCCH
T ss_pred CceeehhHhhhcc-ccCCCcceeCChH
Confidence 3445788999985 9999999999876
No 301
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=54.93 E-value=1.8 Score=50.84 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=21.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCCccCCceEEE
Q 003956 159 SCCVYITYSREDDAIRCIQSVHSYILDGRPLRA 191 (784)
Q Consensus 159 rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvLRA 191 (784)
++++..-=...++|.+-|..+-+.. .+++-+
T Consensus 224 t~YgL~cda~n~~AV~rL~~~K~Rp--~KPl~v 254 (761)
T 3vth_A 224 GGFHLAVNALDDEAVATLRRRKKRY--GKPFAV 254 (761)
T ss_dssp SSEEEECBTTCHHHHHHHHHHHTCC--SSCCCE
T ss_pred cEEEEEecCCCHHHHHHHHHHhCCC--CCCeEE
Confidence 4567777777788988888887765 455443
No 302
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=53.93 E-value=2.6 Score=40.64 Aligned_cols=49 Identities=20% Similarity=0.519 Sum_probs=39.9
Q ss_pred cCCCCCCcccCCCccCCCcccc-CCCChhhhhhHHHHHHhhhccCCCCCCccccc
Q 003956 5 AEKTCPLCAEEMDLTDQQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (784)
Q Consensus 5 ~d~~CPLC~EelD~tD~~f~PC-~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr 58 (784)
++..|.+|..+|.+-+..-..| .|.+.||.-|=... +.+..-+|-.|++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~-----~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH-----PEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC-----SSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccccc-----CCCCcEeeHHHHH
Confidence 5789999999999998888999 89999999997543 2345677877776
No 303
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=49.76 E-value=3.1 Score=42.40 Aligned_cols=29 Identities=31% Similarity=0.703 Sum_probs=22.4
Q ss_pred CCccccccccCcCCCCCCcccccCCCCCC
Q 003956 195 TTKYCHAWIRNMPCSVPDCLYLHDFGSQE 223 (784)
Q Consensus 195 TTKYCs~FLRn~~C~N~dCmYLHE~g~~~ 223 (784)
....|.+|.||.-+.-.+|.|+|++..+.
T Consensus 69 ~~~~C~ffakG~C~~G~~C~y~H~lPt~~ 97 (240)
T 3u1l_A 69 QLFFCLFFAKGMCCLGPKCEYLHHIPDEE 97 (240)
T ss_dssp CCSBCHHHHTTCCSCGGGCSSBBSCCCHH
T ss_pred CCeEcCccccCCCCCCCCCCccCCCCCcc
Confidence 45689999997555557899999987543
No 304
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.24 E-value=4.6 Score=36.15 Aligned_cols=25 Identities=28% Similarity=0.680 Sum_probs=20.3
Q ss_pred CCccccccccCcCCCCCCcccccCCC
Q 003956 195 TTKYCHAWIRNMPCSVPDCLYLHDFG 220 (784)
Q Consensus 195 TTKYCs~FLRn~~C~N~dCmYLHE~g 220 (784)
.+.-|..||+| .|.+.+|.|+|-..
T Consensus 55 ~~~vC~~flkG-~C~r~~C~y~H~~~ 79 (98)
T 2e5s_A 55 TVTVCMDYIKG-RCMREKCKYFHPPA 79 (98)
T ss_dssp EEEBCHHHHHT-CCCCTTCCSBCCCH
T ss_pred ccccchhhccC-CCCCCCcCccCChH
Confidence 34468899996 89999999999654
No 305
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=48.71 E-value=4.3 Score=35.94 Aligned_cols=24 Identities=29% Similarity=0.604 Sum_probs=20.1
Q ss_pred CccccccccCcCCCCCCcccccCCC
Q 003956 196 TKYCHAWIRNMPCSVPDCLYLHDFG 220 (784)
Q Consensus 196 TKYCs~FLRn~~C~N~dCmYLHE~g 220 (784)
.--|..|||+ .|.+++|.|+|-+.
T Consensus 51 ~~vC~dflkG-~C~r~~Cky~H~~~ 74 (89)
T 2rpp_A 51 VIACFDSLKG-RCSRENCKYLHPPT 74 (89)
T ss_dssp EEBCHHHHHT-CCCCTTCCSBCCCH
T ss_pred eeeehhhhhC-cCCCCCcceecCHH
Confidence 3468899987 59999999999865
No 306
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.52 E-value=3.8 Score=36.69 Aligned_cols=24 Identities=29% Similarity=0.664 Sum_probs=20.0
Q ss_pred cccccccCcCCCCC--CcccccCCCCC
Q 003956 198 YCHAWIRNMPCSVP--DCLYLHDFGSQ 222 (784)
Q Consensus 198 YCs~FLRn~~C~N~--dCmYLHE~g~~ 222 (784)
.|..||||. |.+. +|.|+|++...
T Consensus 22 VCr~FlrG~-C~rgd~~C~FsH~~~~~ 47 (98)
T 2e5s_A 22 VCREFQRGN-CARGETDCRFAHPADST 47 (98)
T ss_dssp BCSHHHHTC-CSSHHHHCSSBCCSSCC
T ss_pred hhHHHhcCc-CCCCCCCCCCcCCchhc
Confidence 599999965 9997 59999998653
No 307
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=45.47 E-value=24 Score=31.58 Aligned_cols=61 Identities=16% Similarity=0.459 Sum_probs=39.9
Q ss_pred CcccCCCCCCcccCCCccCCCccccCC--CChhhhhhHHHHHHhhhccCCCCCCccc-cccccccch
Q 003956 2 SDKAEKTCPLCAEEMDLTDQQLKPCNC--GYEICVWCWNHIMEMAEKDGTEGRCPAC-RTAYDKEKI 65 (784)
Q Consensus 2 sDe~d~~CPLC~EelD~tD~~f~PC~C--GYQIC~fC~~~I~~~~~k~~~~grCPAC-Rr~Ydee~i 65 (784)
.+-.-..|-||-|.| .|.+|.-||- ++..|.-|-...++. +....+-.||.= |-|..-..+
T Consensus 11 ~~~a~l~CtlC~erL--EdtHFVQCPsv~~HkFCFpCsr~sIk~-q~~~~EvyCPSG~kCpL~gS~~ 74 (93)
T 2cs3_A 11 ANSGPLCCTICHERL--EDTHFVQCPSVPSHKFCFPCSRESIKA-QGATGEVYCPSGEKCPLVGSNV 74 (93)
T ss_dssp CSCCSCCCSSSCSCC--SSTTSEECSSCSSCEECHHHHHHHHHH-HHSSSCCCCTTSSCCBCSSSSS
T ss_pred CCCCeeEeecchhhh--ccCceeeCCCccCCeeeccccHHHHHh-cCCCCcEECCCCCccccCCCcC
Confidence 344557899999998 5789999987 777777776544331 124567788833 334444444
No 308
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.73 E-value=9.1 Score=36.04 Aligned_cols=37 Identities=22% Similarity=0.612 Sum_probs=29.3
Q ss_pred ccCCCCCCcccCCCccCCCcccc-CCCChhhhhhHHHH
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPC-NCGYEICVWCWNHI 40 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC-~CGYQIC~fC~~~I 40 (784)
+++..|.+|..+|.+.+..-..| .|.+.||.-|=..+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 35689999999998776666777 78888888887654
No 309
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=42.25 E-value=7.5 Score=32.41 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=19.2
Q ss_pred cccccccCcCCCCC--CcccccCCCC
Q 003956 198 YCHAWIRNMPCSVP--DCLYLHDFGS 221 (784)
Q Consensus 198 YCs~FLRn~~C~N~--dCmYLHE~g~ 221 (784)
-|..|++|. |.+. +|.|+|....
T Consensus 8 vC~~f~~G~-C~rg~~~C~f~H~~~~ 32 (70)
T 3d2q_A 8 VCREYQRGN-CNRGENDCRFAHPADS 32 (70)
T ss_dssp BCHHHHTTC-CSSCTTTCSSBCCCTT
T ss_pred hCHHHhcCC-CCCCCCCCCCccCccc
Confidence 599999877 9987 5999998753
No 310
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=41.40 E-value=17 Score=29.99 Aligned_cols=27 Identities=22% Similarity=0.684 Sum_probs=23.3
Q ss_pred CCccccccccCcCCCC-CCcccccCCCC
Q 003956 195 TTKYCHAWIRNMPCSV-PDCLYLHDFGS 221 (784)
Q Consensus 195 TTKYCs~FLRn~~C~N-~dCmYLHE~g~ 221 (784)
.|+-|..|++.-.|.. ..|.|+|...+
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 5678999998889996 79999998864
No 311
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=38.93 E-value=8.4 Score=34.12 Aligned_cols=24 Identities=29% Similarity=0.630 Sum_probs=20.7
Q ss_pred cccccccCcCCCCC--CcccccCCCCC
Q 003956 198 YCHAWIRNMPCSVP--DCLYLHDFGSQ 222 (784)
Q Consensus 198 YCs~FLRn~~C~N~--dCmYLHE~g~~ 222 (784)
.|..||||. |.+. +|.|.|.....
T Consensus 19 VCrdFlrG~-C~r~d~~CrfsH~~~~~ 44 (89)
T 2rpp_A 19 VCRQFQRGT-CSRSDEECKFAHPPKSC 44 (89)
T ss_dssp BCHHHHHTC-CCCCTTTSSSBCCCSSS
T ss_pred hchHHhcCC-CCCCCCCCCCcCCCccc
Confidence 699999965 9998 89999998763
No 312
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.43 E-value=9.5 Score=35.11 Aligned_cols=28 Identities=32% Similarity=0.947 Sum_probs=19.0
Q ss_pred cc-CCCChhhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 003956 25 PC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (784)
Q Consensus 25 PC-~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Ydee 63 (784)
-| .|||.+ + .++ ....+||.|+...-+.
T Consensus 69 ~C~~CG~~F---~-~~~-------~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 69 QCRKCGFVF---K-AEI-------NIPSRCPKCKSEWIEE 97 (105)
T ss_dssp BBTTTCCBC---C-CCS-------SCCSSCSSSCCCCBCC
T ss_pred ChhhCcCee---c-ccC-------CCCCCCcCCCCCccCC
Confidence 35 789994 1 222 4579999999966544
No 313
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.43 E-value=19 Score=30.37 Aligned_cols=27 Identities=30% Similarity=0.943 Sum_probs=21.6
Q ss_pred CCccccccccCcCCCC-CCcccccCCCCC
Q 003956 195 TTKYCHAWIRNMPCSV-PDCLYLHDFGSQ 222 (784)
Q Consensus 195 TTKYCs~FLRn~~C~N-~dCmYLHE~g~~ 222 (784)
.+.-|.+||+|. |.+ .+|.|+|++...
T Consensus 9 k~~~C~~fl~G~-C~~G~~C~fsH~~~~~ 36 (77)
T 2d9n_A 9 KTVVCKHWLRGL-CKKGDQCEFLHEYDMT 36 (77)
T ss_dssp TTSBCHHHHTTC-CSCTTSSSSBCSCCTT
T ss_pred cceeCHhHccCc-CCCCCCCCCccccccC
Confidence 456799999955 888 679999998753
No 314
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=29.92 E-value=18 Score=30.47 Aligned_cols=26 Identities=31% Similarity=0.914 Sum_probs=21.2
Q ss_pred CCccccccccCcCCCC-CCcccccCCCC
Q 003956 195 TTKYCHAWIRNMPCSV-PDCLYLHDFGS 221 (784)
Q Consensus 195 TTKYCs~FLRn~~C~N-~dCmYLHE~g~ 221 (784)
.+.-|.+||+| .|.+ .+|.|+|++..
T Consensus 15 k~~vCk~fl~G-~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 15 KTVVCKHWLRG-LCKKGDQCEFLHEYDM 41 (72)
T ss_dssp CCSBCHHHHTT-CCCCGGGSSSBCSCCT
T ss_pred cCeeCHHHhcC-CCCCCCCCCCcccccc
Confidence 34679999995 5898 78999999764
No 315
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=29.82 E-value=18 Score=32.62 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=19.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCCccCCceEEEeecCC-----ccccccccCcCCCCCCcccccCCCCCCCCCcHHHHHH
Q 003956 159 SCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTT-----KYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVS 233 (784)
Q Consensus 159 rgsAYVTFs~kEDA~kAI~aLDG~~LdGRvLRASfGTT-----KYCs~FLRn~~C~N~dCmYLHE~g~~~DsfTKeEm~~ 233 (784)
...+|+.|.+..-|.+|++.++|....|+.- .+++.. ..+..|++|.+ ...|.+||..
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~~~~~~~~~~l~V~nLp----------------~~~te~~L~~ 66 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRPPPDVEGMTSLKVDNLT----------------YRTSPDTLRR 66 (135)
T ss_dssp --------------------------------CCSCCSCSSGGGCCCEEEECCC----------------SSCHHHHHHH
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCCCCCCCCCCEEEEeCCC----------------CCCCHHHHHH
Confidence 3468999999999999999999998888653 344432 23456777766 5689999987
Q ss_pred hhhc
Q 003956 234 AFTR 237 (784)
Q Consensus 234 ~~tr 237 (784)
...+
T Consensus 67 ~F~~ 70 (135)
T 2lea_A 67 VFEK 70 (135)
T ss_dssp HHGG
T ss_pred HHHh
Confidence 7665
No 316
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.53 E-value=23 Score=30.98 Aligned_cols=34 Identities=24% Similarity=0.672 Sum_probs=24.5
Q ss_pred ccCCCCCCcccCCCccCCCcccc-CCCChhhhhhH
Q 003956 4 KAEKTCPLCAEEMDLTDQQLKPC-NCGYEICVWCW 37 (784)
Q Consensus 4 e~d~~CPLC~EelD~tD~~f~PC-~CGYQIC~fC~ 37 (784)
+.+..|.+|-+.|-+-=..-.+| .|.+.||..|-
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 56789999999997654455666 56777666663
No 317
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=26.29 E-value=11 Score=33.81 Aligned_cols=33 Identities=27% Similarity=0.680 Sum_probs=19.7
Q ss_pred CCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccc
Q 003956 21 QQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (784)
Q Consensus 21 ~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr 58 (784)
..++||+||-+ |-... +..+..+.-..||.|--
T Consensus 21 ~y~ypCrCGd~---F~Ite--edLe~ge~iv~C~sCSL 53 (89)
T 2jr7_A 21 TYFYPCPCGDN---FSITK--EDLENGEDVATCPSCSL 53 (89)
T ss_dssp EEEEECTTSSE---EEEEH--HHHHHTCCEEECTTTCC
T ss_pred EEEEcCCCCCE---EEECH--HHHhCCCEEEECCCCcc
Confidence 45799999987 32211 11122234578999975
No 318
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=25.06 E-value=13 Score=32.69 Aligned_cols=33 Identities=27% Similarity=0.684 Sum_probs=19.5
Q ss_pred CCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccc
Q 003956 21 QQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (784)
Q Consensus 21 ~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr 58 (784)
..++||+||-+ |-... +..+..+.-..||.|--
T Consensus 28 ~y~y~CrCGd~---F~it~--edL~~ge~iv~C~sCSL 60 (83)
T 1wge_A 28 TYFYPCPCGDN---FAITK--EDLENGEDVATCPSCSL 60 (83)
T ss_dssp EEEECCSSSSC---EEEEH--HHHHTTCCEEECTTTCC
T ss_pred EEEEeCCCCCE---EEECH--HHHhCCCEEEECCCCce
Confidence 35799999987 22211 12222234478999976
No 319
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=24.70 E-value=32 Score=30.14 Aligned_cols=25 Identities=32% Similarity=0.745 Sum_probs=15.2
Q ss_pred CCCCCccc------CCCccCCCcccc-CCCCh
Q 003956 7 KTCPLCAE------EMDLTDQQLKPC-NCGYE 31 (784)
Q Consensus 7 ~~CPLC~E------elD~tD~~f~PC-~CGYQ 31 (784)
-+||+|++ ++|+.-..+-|| .||..
T Consensus 18 WVCpICsfsN~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 18 WVCPICMVSNETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EECTTTCCEEEESSCCCTTCSSCCBCTTTCCB
T ss_pred eECccccccCcCccccCCCCCCCCcccccCcc
Confidence 58999993 344433556666 56654
No 320
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.26 E-value=2.5e+02 Score=28.94 Aligned_cols=135 Identities=19% Similarity=0.294 Sum_probs=70.4
Q ss_pred ccCeEEEeCCCCCCC-----hHHHHHH--HHhhccCCceEEEEEe---ecCCCCcccCCCCCcEEEEEeCCHHHH---HH
Q 003956 108 QRNLVYIIGLPINLA-----DEDLLQR--KEYFGQYGKVLKVSIS---RTATGDIQHSANNSCCVYITYSREDDA---IR 174 (784)
Q Consensus 108 QRNLVYV~GLP~~IA-----eEDLLR~--~EyFGQYGKI~KIvIn---rdk~g~~q~~~~~rgsAYVTFs~kEDA---~k 174 (784)
+++-|-|+|+|.... -|.|+.. .|-|-.-|+-.+|.|- |.....+...+.++. .-|-|....+- .+
T Consensus 51 Rr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~-IIvK~~~~~~KErILk 129 (233)
T 2yko_A 51 KRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRH-IIVRFTKVEMKEKMLR 129 (233)
T ss_dssp TTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCC-EEEEESSHHHHHHHHH
T ss_pred cccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCe-EEEEecccccHHHHHH
Confidence 578889999999875 1234431 3567766655555443 322211222334565 77777776554 44
Q ss_pred HHHHhCCCccCCceEEEe--ec--CCccccc------cccCcCCCCCCcccccC-----CCCCCCCCcHHHHHHhhh-ch
Q 003956 175 CIQSVHSYILDGRPLRAC--FG--TTKYCHA------WIRNMPCSVPDCLYLHD-----FGSQEDSFTKDEIVSAFT-RS 238 (784)
Q Consensus 175 AI~aLDG~~LdGRvLRAS--fG--TTKYCs~------FLRn~~C~N~dCmYLHE-----~g~~~DsfTKeEm~~~~t-r~ 238 (784)
|........+.|.+||.+ |. |-+-+.. .||+... .|-.+|-=- -|.-.---+|+++..+.+ +.
T Consensus 130 aaR~k~~vtykG~pIrlsaDfSaeTLq~RRew~~Ifk~Lk~knl-qpRilyPakLsf~~eGeiksF~dkqkl~efi~~~p 208 (233)
T 2yko_A 130 AAREKGRVTLKGKPIRLTVDLSAETLQARREWGPIFNILKEKNF-QPRISYPAKLSFISEGEIKYFIDKQMLRDFVTTRP 208 (233)
T ss_dssp HHHTTSCEEETTEEEEEEECCCHHHHHHHHHTHHHHHHHHHTTC-CCEEETTTEEEEESSSSEEEESSHHHHHHHHTTCH
T ss_pred HHHHhcccccCCCceEEeCCCCHHHHHHHHHHhHHHHHHHHcCC-CcccccccceEEEEcCeEeecCCHHHHHHHHhcCh
Confidence 444445678899999865 43 2233222 2455432 344444321 232233346777777654 44
Q ss_pred hhhhhh
Q 003956 239 RVQQII 244 (784)
Q Consensus 239 ~~~~~~ 244 (784)
.+|+++
T Consensus 209 ~l~e~l 214 (233)
T 2yko_A 209 ALKELL 214 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566665
No 321
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=24.13 E-value=14 Score=31.24 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=21.8
Q ss_pred CCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 7 ~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
..||.|..+|.+... +..-.||+|++.|.=
T Consensus 9 L~CP~ck~~L~~~~~--------------------------~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKS--------------------------KDELICKGDRLAFPI 38 (68)
T ss_dssp CBCTTTCCBCEEETT--------------------------TTEEEETTTTEEEEE
T ss_pred eECCCCCCcCeEeCC--------------------------CCEEEcCCCCcEecC
Confidence 589999988865321 234579999999953
No 322
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.83 E-value=32 Score=29.31 Aligned_cols=9 Identities=33% Similarity=0.822 Sum_probs=5.2
Q ss_pred CCCCccccc
Q 003956 50 EGRCPACRT 58 (784)
Q Consensus 50 ~grCPACRr 58 (784)
.-+||.|..
T Consensus 45 ~irCp~CG~ 53 (70)
T 1twf_L 45 AVRCKDCGH 53 (70)
T ss_dssp TTCCSSSCC
T ss_pred CccCCCCCc
Confidence 446666654
No 323
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=22.31 E-value=19 Score=29.75 Aligned_cols=26 Identities=23% Similarity=0.620 Sum_probs=0.0
Q ss_pred CccccccccCcCCCC-CCcccccCCCC
Q 003956 196 TKYCHAWIRNMPCSV-PDCLYLHDFGS 221 (784)
Q Consensus 196 TKYCs~FLRn~~C~N-~dCmYLHE~g~ 221 (784)
|+-|..|+..-.|.. ..|.|+|...+
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp ---------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 567988887778988 79999998754
No 324
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=22.26 E-value=19 Score=30.47 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=22.1
Q ss_pred CCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
-..||.|..+|.+... ...-.||+|++.|.=
T Consensus 8 iL~CP~ck~~L~~~~~--------------------------~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQD--------------------------KQELWSRQAKLAYPI 38 (68)
T ss_dssp CCBCSSSCCBCEEETT--------------------------TTEEEETTTTEEEEE
T ss_pred heECCCCCCcCeEeCC--------------------------CCEEEcCCCCcEecC
Confidence 3589999998865321 134579999999953
No 325
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=21.72 E-value=24 Score=30.67 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=0.0
Q ss_pred CCCccccccCeEEEeCCCCCCChH
Q 003956 101 LTNVRVIQRNLVYIIGLPINLADE 124 (784)
Q Consensus 101 La~VRVIQRNLVYV~GLP~~IAeE 124 (784)
...-+..+.+.|||.|||+.++++
T Consensus 89 ~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 89 ELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp ------------------------
T ss_pred ccccccCCCCceEeCCCCCCcccc
Confidence 334444556679999999999875
No 326
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=21.40 E-value=52 Score=28.12 Aligned_cols=40 Identities=28% Similarity=0.502 Sum_probs=31.2
Q ss_pred CCcccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHH
Q 003956 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHI 40 (784)
Q Consensus 1 msDe~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I 40 (784)
+.|++...|.+|-..|.+..+..-==.||.-+|..|-.+-
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3567778999999999987655544489999999997653
No 327
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.32 E-value=15 Score=31.23 Aligned_cols=31 Identities=26% Similarity=0.525 Sum_probs=22.2
Q ss_pred CCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCccccccccc
Q 003956 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (784)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yde 62 (784)
-..||.|..+|.+.. .+..-.||+|++.|.=
T Consensus 8 iL~CP~ck~~L~~~~--------------------------~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 8 ILVCPVCKGRLEFQR--------------------------AQAELVCNADRLAFPV 38 (70)
T ss_dssp CCBCTTTCCBEEEET--------------------------TTTEEEETTTTEEEEE
T ss_pred heECCCCCCcCEEeC--------------------------CCCEEEcCCCCceecC
Confidence 358999999886532 1234579999999953
No 328
>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*
Probab=20.60 E-value=33 Score=37.19 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=22.6
Q ss_pred cCCCccCCCccccCC-CChhhhhhHHHHHH
Q 003956 14 EEMDLTDQQLKPCNC-GYEICVWCWNHIME 42 (784)
Q Consensus 14 EelD~tD~~f~PC~C-GYQIC~fC~~~I~~ 42 (784)
.++|.+|...+-|.| |-.||.-||..+..
T Consensus 114 FDID~~d~diRtC~C~~~~iC~kC~~~~~~ 143 (366)
T 1v33_A 114 FDIDAKDLPLRRCEHEPGTVCPICLNDAKE 143 (366)
T ss_dssp EEEEGGGCSSCSSCSCTTCCCHHHHHHHHH
T ss_pred EEecCCcCCcCccCCCCcchHHHHHHHHHH
Confidence 356888887888988 67899999965543
No 329
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.30 E-value=22 Score=30.14 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=21.6
Q ss_pred CCCCCCcccCCCccCCCccccCCCChhhhhhHHHHHHhhhccCCCCCCcccccccc
Q 003956 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (784)
Q Consensus 6 d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I~~~~~k~~~~grCPACRr~Yd 61 (784)
-..||.|..+|.... .+..-.||+|++.|.
T Consensus 10 iL~CP~ck~~L~~~~--------------------------~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 10 VLACPKDKGPLRYLE--------------------------SEQLLVNERLNLAYR 39 (67)
T ss_dssp CCBCTTTCCBCEEET--------------------------TTTEEEETTTTEEEE
T ss_pred HhCCCCCCCcCeEeC--------------------------CCCEEEcCCCCcccc
Confidence 358999999886532 123457999999995
No 330
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=20.25 E-value=49 Score=28.20 Aligned_cols=40 Identities=23% Similarity=0.560 Sum_probs=30.2
Q ss_pred CCcccCCCCCCcccCCCccCCCccccCCCChhhhhhHHHH
Q 003956 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHI 40 (784)
Q Consensus 1 msDe~d~~CPLC~EelD~tD~~f~PC~CGYQIC~fC~~~I 40 (784)
+.|++...|.+|..+|.+.-+..-==.||.-+|.-|-.+-
T Consensus 14 ~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 14 LKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp -CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3566678999999999876555444489999999998653
Done!