BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003957
         (784 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
           Resolution
 pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
           Resolution
          Length = 297

 Score = 30.4 bits (67), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 7   KSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLE 50
           + F  +P+ L+ + +    +TVDSE  L + +L W+  N  + E
Sbjct: 196 EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERE 239


>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
 pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
          Length = 279

 Score = 30.4 bits (67), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 7   KSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLE 50
           + F  +P+ L+ + +    +TVDSE  L + +L W+  N  + E
Sbjct: 178 EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERE 221


>pdb|2L3F|A Chain A, Solution Nmr Structure Of A Putative Uracil Dna
           Glycosylase From Methanosarcina Acetivorans, Northeast
           Structural Genomics Consortium Target Mvr76
          Length = 166

 Score = 29.3 bits (64), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 56  EDDLTILKEIRISILPLW--FAAGKRRSSYFSKLSDESVNSILRLVKVHP 103
           E  L  LK  RI    LW  F AG R  S  SK+ DE +N    L ++ P
Sbjct: 59  EKKLKTLKHNRIG---LWDVFKAGSREGSQDSKIGDEEINDFSGLKEMVP 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,851,674
Number of Sequences: 62578
Number of extensions: 728467
Number of successful extensions: 1420
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1418
Number of HSP's gapped (non-prelim): 6
length of query: 784
length of database: 14,973,337
effective HSP length: 107
effective length of query: 677
effective length of database: 8,277,491
effective search space: 5603861407
effective search space used: 5603861407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)