Query 003957
Match_columns 784
No_of_seqs 423 out of 3314
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 15:00:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-28 3.4E-33 302.6 20.8 466 180-744 116-584 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.5E-28 1.2E-32 297.8 22.9 398 288-746 161-562 (968)
3 KOG4341 F-box protein containi 99.9 1.6E-25 3.5E-30 228.0 7.7 376 115-685 76-459 (483)
4 KOG4341 F-box protein containi 99.9 3.4E-24 7.5E-29 218.3 6.9 309 386-737 138-458 (483)
5 KOG4194 Membrane glycoprotein 99.8 3.6E-22 7.8E-27 210.4 2.7 153 291-470 78-231 (873)
6 KOG4194 Membrane glycoprotein 99.8 1E-21 2.2E-26 207.0 -1.6 354 344-740 79-448 (873)
7 KOG0444 Cytoskeletal regulator 99.7 5E-19 1.1E-23 187.7 -4.3 201 525-744 173-375 (1255)
8 KOG0444 Cytoskeletal regulator 99.7 4.5E-19 9.8E-24 188.1 -9.7 86 626-718 290-375 (1255)
9 PLN03210 Resistant to P. syrin 99.7 8.5E-16 1.8E-20 190.3 16.7 310 386-745 589-907 (1153)
10 KOG0618 Serine/threonine phosp 99.6 2.7E-17 5.8E-22 183.2 -1.7 290 410-741 217-510 (1081)
11 cd00116 LRR_RI Leucine-rich re 99.6 5.3E-14 1.1E-18 151.0 22.1 61 653-716 250-318 (319)
12 KOG0618 Serine/threonine phosp 99.6 7.7E-17 1.7E-21 179.6 -0.5 106 211-357 23-128 (1081)
13 cd00116 LRR_RI Leucine-rich re 99.6 1.1E-13 2.5E-18 148.4 23.8 87 599-688 220-317 (319)
14 KOG2120 SCF ubiquitin ligase, 99.5 1.3E-14 2.9E-19 142.2 9.6 248 387-708 137-390 (419)
15 PLN03210 Resistant to P. syrin 99.5 1.4E-13 3.1E-18 170.6 14.1 129 501-641 778-907 (1153)
16 KOG0472 Leucine-rich repeat pr 99.5 9.5E-17 2.1E-21 163.0 -12.0 110 623-744 431-541 (565)
17 KOG0472 Leucine-rich repeat pr 99.5 3.5E-16 7.5E-21 159.0 -8.5 464 180-718 66-541 (565)
18 KOG2120 SCF ubiquitin ligase, 99.4 1.4E-13 3E-18 135.2 6.5 138 318-475 186-328 (419)
19 KOG1909 Ran GTPase-activating 99.3 1.5E-11 3.1E-16 124.2 13.6 100 336-470 23-130 (382)
20 KOG1947 Leucine rich repeat pr 99.2 1.4E-11 3.1E-16 140.3 8.5 158 292-465 162-326 (482)
21 KOG1947 Leucine rich repeat pr 99.2 6.1E-11 1.3E-15 135.1 12.1 180 383-638 185-373 (482)
22 KOG1909 Ran GTPase-activating 99.1 5.1E-10 1.1E-14 113.2 12.5 114 599-717 184-310 (382)
23 PRK15387 E3 ubiquitin-protein 99.0 4.5E-10 9.7E-15 130.0 8.2 92 343-470 201-292 (788)
24 PRK15387 E3 ubiquitin-protein 99.0 7.8E-10 1.7E-14 128.1 8.0 256 386-718 201-458 (788)
25 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.6E-15 120.8 1.0 163 549-717 144-313 (505)
26 KOG4237 Extracellular matrix p 98.8 9.3E-10 2E-14 112.7 1.5 270 413-742 68-357 (498)
27 KOG3207 Beta-tubulin folding c 98.8 2.2E-09 4.8E-14 111.5 3.5 136 383-535 143-281 (505)
28 PRK15370 E3 ubiquitin-protein 98.6 3.9E-08 8.4E-13 114.8 6.4 164 526-718 263-428 (754)
29 KOG4237 Extracellular matrix p 98.5 5.3E-09 1.2E-13 107.3 -4.3 274 387-689 68-357 (498)
30 PRK15370 E3 ubiquitin-protein 98.5 3.6E-07 7.8E-12 106.9 10.0 246 343-690 178-427 (754)
31 KOG3665 ZYG-1-like serine/thre 98.5 2.7E-07 5.9E-12 106.8 7.6 157 291-470 122-285 (699)
32 KOG3665 ZYG-1-like serine/thre 98.3 2.5E-06 5.3E-11 99.0 10.1 152 180-368 120-275 (699)
33 PF14580 LRR_9: Leucine-rich r 98.3 1.1E-06 2.4E-11 83.7 5.9 106 341-469 40-149 (175)
34 KOG1259 Nischarin, modulator o 98.3 5.2E-07 1.1E-11 89.5 3.2 207 493-718 174-412 (490)
35 KOG0617 Ras suppressor protein 98.2 4.8E-09 1E-13 95.5 -10.7 154 551-718 33-186 (264)
36 KOG2982 Uncharacterized conser 98.2 5.8E-07 1.3E-11 89.2 2.8 56 414-469 47-106 (418)
37 PF14580 LRR_9: Leucine-rich r 98.2 6.9E-07 1.5E-11 85.2 3.0 108 341-472 17-125 (175)
38 COG5238 RNA1 Ran GTPase-activa 98.1 1.9E-05 4.2E-10 77.6 10.9 91 341-446 28-131 (388)
39 KOG2982 Uncharacterized conser 98.1 6.5E-06 1.4E-10 81.9 6.3 194 543-740 63-288 (418)
40 KOG0617 Ras suppressor protein 98.0 4.7E-08 1E-12 89.1 -9.4 153 575-743 32-185 (264)
41 COG5238 RNA1 Ran GTPase-activa 98.0 9.5E-05 2E-09 72.9 11.9 114 600-718 185-316 (388)
42 KOG1259 Nischarin, modulator o 97.8 4E-06 8.8E-11 83.3 0.3 103 626-742 283-385 (490)
43 KOG4658 Apoptotic ATPase [Sign 97.7 1.9E-05 4.2E-10 94.0 3.7 107 290-421 544-651 (889)
44 KOG1859 Leucine-rich repeat pr 97.5 1.3E-05 2.9E-10 88.6 -1.1 152 285-470 103-264 (1096)
45 PF13855 LRR_8: Leucine rich r 97.5 3.3E-05 7.2E-10 60.1 0.6 58 678-742 1-60 (61)
46 KOG1859 Leucine-rich repeat pr 97.3 2.5E-05 5.5E-10 86.6 -3.0 176 523-718 107-292 (1096)
47 PF13855 LRR_8: Leucine rich r 97.2 0.0002 4.3E-09 55.7 2.3 58 412-470 1-59 (61)
48 PF07707 BACK: BTB And C-termi 97.1 0.00014 3.1E-09 63.4 0.1 67 4-75 32-98 (103)
49 KOG3864 Uncharacterized conser 97.1 0.00037 8E-09 66.2 2.8 84 601-687 102-185 (221)
50 KOG4658 Apoptotic ATPase [Sign 97.0 0.0011 2.5E-08 79.2 6.5 182 549-745 543-731 (889)
51 COG4886 Leucine-rich repeat (L 96.9 0.00062 1.3E-08 75.3 3.9 174 525-718 116-290 (394)
52 KOG4308 LRR-containing protein 96.9 0.00031 6.6E-09 78.3 1.0 217 388-641 89-332 (478)
53 smart00875 BACK BTB And C-term 96.9 0.00032 7E-09 60.8 0.9 67 4-76 32-98 (101)
54 PLN03150 hypothetical protein; 96.8 0.002 4.3E-08 75.3 6.5 61 652-716 441-501 (623)
55 KOG4308 LRR-containing protein 96.7 0.00051 1.1E-08 76.6 1.1 88 383-471 112-215 (478)
56 COG4886 Leucine-rich repeat (L 96.6 0.0027 6E-08 70.2 5.6 147 292-471 141-288 (394)
57 KOG3864 Uncharacterized conser 96.5 0.0031 6.8E-08 60.1 4.3 62 600-663 125-186 (221)
58 KOG2123 Uncharacterized conser 96.4 0.0004 8.8E-09 68.9 -1.9 80 628-718 20-101 (388)
59 PF12799 LRR_4: Leucine Rich r 96.4 0.0026 5.7E-08 45.5 2.7 34 679-716 2-35 (44)
60 PLN03150 hypothetical protein; 96.3 0.0063 1.4E-07 71.1 6.6 105 345-470 420-525 (623)
61 KOG4579 Leucine-rich repeat (L 96.2 0.0011 2.4E-08 58.9 -0.4 106 628-743 28-135 (177)
62 PRK15386 type III secretion pr 95.9 0.012 2.5E-07 63.6 5.9 137 550-716 51-188 (426)
63 KOG1644 U2-associated snRNP A' 95.7 0.0094 2E-07 56.9 3.4 107 627-742 42-151 (233)
64 KOG0532 Leucine-rich repeat (L 95.5 0.00052 1.1E-08 74.6 -6.3 170 551-742 98-271 (722)
65 KOG2739 Leucine-rich acidic nu 95.5 0.0024 5.3E-08 63.3 -1.2 65 522-586 62-126 (260)
66 PF12799 LRR_4: Leucine Rich r 95.2 0.026 5.7E-07 40.3 3.6 37 705-745 1-38 (44)
67 KOG2123 Uncharacterized conser 95.1 0.0062 1.3E-07 60.7 0.1 115 575-702 18-137 (388)
68 PRK15386 type III secretion pr 95.1 0.049 1.1E-06 58.9 6.8 137 523-688 50-187 (426)
69 KOG1644 U2-associated snRNP A' 94.6 0.038 8.2E-07 52.9 4.1 82 385-470 41-123 (233)
70 smart00367 LRR_CC Leucine-rich 94.5 0.04 8.6E-07 34.3 2.8 23 316-338 1-23 (26)
71 KOG4579 Leucine-rich repeat (L 94.4 0.012 2.7E-07 52.5 0.2 83 628-718 54-136 (177)
72 KOG2739 Leucine-rich acidic nu 94.3 0.016 3.6E-07 57.6 1.0 113 625-743 41-155 (260)
73 KOG0531 Protein phosphatase 1, 94.2 0.0046 1E-07 68.7 -3.5 15 728-742 302-316 (414)
74 KOG0532 Leucine-rich repeat (L 94.1 0.0041 8.9E-08 67.9 -4.0 88 379-470 182-270 (722)
75 smart00367 LRR_CC Leucine-rich 93.3 0.09 1.9E-06 32.7 2.6 24 208-231 1-24 (26)
76 KOG0531 Protein phosphatase 1, 92.7 0.02 4.3E-07 63.7 -1.7 173 550-746 71-247 (414)
77 PHA03098 kelch-like protein; P 92.5 0.076 1.6E-06 61.3 2.7 70 3-77 140-209 (534)
78 PF13516 LRR_6: Leucine Rich r 88.2 0.35 7.6E-06 29.3 1.7 22 342-363 1-22 (24)
79 smart00368 LRR_RI Leucine rich 85.8 0.79 1.7E-05 29.0 2.4 25 343-367 2-26 (28)
80 PF13516 LRR_6: Leucine Rich r 82.4 1.3 2.9E-05 26.7 2.3 21 435-455 2-22 (24)
81 PHA02713 hypothetical protein; 78.5 1.1 2.5E-05 51.7 1.9 64 3-72 158-222 (557)
82 smart00368 LRR_RI Leucine rich 73.9 3.5 7.7E-05 26.0 2.4 25 551-575 2-26 (28)
83 PF13306 LRR_5: Leucine rich r 72.9 1 2.2E-05 40.5 -0.3 9 677-685 80-88 (129)
84 KOG4441 Proteins containing BT 71.2 2 4.3E-05 49.7 1.4 71 3-78 169-239 (571)
85 KOG3763 mRNA export factor TAP 69.8 6.2 0.00013 44.0 4.7 39 597-637 215-254 (585)
86 PF13306 LRR_5: Leucine rich r 68.8 2 4.4E-05 38.5 0.7 102 624-740 9-112 (129)
87 KOG3763 mRNA export factor TAP 67.1 7.2 0.00016 43.5 4.5 84 383-466 215-307 (585)
88 PF13504 LRR_7: Leucine rich r 64.3 5.8 0.00013 21.8 1.7 11 628-638 2-12 (17)
89 PF00560 LRR_1: Leucine Rich R 54.5 5.7 0.00012 23.4 0.6 9 707-715 2-10 (22)
90 smart00370 LRR Leucine-rich re 39.8 22 0.00048 21.6 1.7 13 413-425 3-15 (26)
91 smart00369 LRR_TYP Leucine-ric 39.8 22 0.00048 21.6 1.7 13 413-425 3-15 (26)
92 PF07723 LRR_2: Leucine Rich R 29.9 36 0.00077 21.1 1.4 24 319-342 2-25 (26)
93 KOG4242 Predicted myosin-I-bin 23.3 4.7E+02 0.01 29.2 9.1 69 680-748 415-485 (553)
94 KOG4242 Predicted myosin-I-bin 22.9 1.1E+02 0.0023 33.9 4.3 166 291-469 214-389 (553)
95 KOG3735 Tropomodulin and leiom 22.1 91 0.002 32.9 3.5 85 383-467 195-290 (353)
96 smart00365 LRR_SD22 Leucine-ri 21.7 76 0.0016 19.8 1.7 13 678-690 2-14 (26)
97 PF08565 CDC37_M: Cdc37 Hsp90 21.4 38 0.00083 32.3 0.6 38 7-47 52-94 (173)
98 PHA02790 Kelch-like protein; P 20.8 55 0.0012 37.1 1.8 35 7-44 161-195 (480)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.6e-28 Score=302.64 Aligned_cols=466 Identities=19% Similarity=0.105 Sum_probs=292.1
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+.+|++|++++|....... ...+++|++|++++ +.++......+ ..+++|++|+|+.+.....
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p-----~~~l~~L~~L~Ls~-n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~--------- 179 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIP-----RGSIPNLETLDLSN-NMLSGEIPNDI-GSFSSLKVLDLGGNVLVGK--------- 179 (968)
T ss_pred cCCCCCEEECcCCccccccC-----ccccCCCCEEECcC-CcccccCChHH-hcCCCCCEEECccCccccc---------
Confidence 45667777776654321100 12456677777766 34433222333 3667777777764321100
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLI 339 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~ 339 (784)
.+....++++|++|++++|.... .....+ ..+++|++|++++|.... .++..+
T Consensus 180 -----------------------~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l-~~l~~L~~L~L~~n~l~~--~~p~~l 232 (968)
T PLN00113 180 -----------------------IPNSLTNLTSLEFLTLASNQLVG-QIPREL-GQMKSLKWIYLGYNNLSG--EIPYEI 232 (968)
T ss_pred -----------------------CChhhhhCcCCCeeeccCCCCcC-cCChHH-cCcCCccEEECcCCccCC--cCChhH
Confidence 01113456777777777764321 111222 346677777777754321 122334
Q ss_pred HhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEe
Q 003957 340 RRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCL 419 (784)
Q Consensus 340 ~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L 419 (784)
.++++|++|++++|.+... +|..+..+++|+.|++++|.... ..+.....+++|+.|++
T Consensus 233 ~~l~~L~~L~L~~n~l~~~-------------------~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGP-------------------IPSSLGNLKNLQYLFLYQNKLSG--PIPPSIFSLQKLISLDL 291 (968)
T ss_pred hcCCCCCEEECcCceeccc-------------------cChhHhCCCCCCEEECcCCeeec--cCchhHhhccCcCEEEC
Confidence 5677777777777765431 34445677788888888775421 11222356778888888
Q ss_pred cCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhh
Q 003957 420 SGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELG 498 (784)
Q Consensus 420 s~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (784)
++|.+....+..+. .++|++|++++|.+....... +..+++|+.|++++|... +.+...++
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~-----------------~~~p~~l~ 353 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFS-----------------GEIPKNLG 353 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCc-----------------CcCChHHh
Confidence 88877655544444 577888888888766543333 357788888888776431 12334566
Q ss_pred cCCCccEEEecc-ccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCC
Q 003957 499 RTRKLEEIVLGW-GFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRR 577 (784)
Q Consensus 499 ~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~ 577 (784)
.+++|+.|++++ .+... ....+..+.+|+.|+++++. +.......+.. +++|+.|+++.|.++.. ++..+..+++
T Consensus 354 ~~~~L~~L~Ls~n~l~~~-~p~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~-~~~L~~L~L~~n~l~~~-~p~~~~~l~~ 429 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGE-IPEGLCSSGNLFKLILFSNS-LEGEIPKSLGA-CRSLRRVRLQDNSFSGE-LPSEFTKLPL 429 (968)
T ss_pred CCCCCcEEECCCCeeEee-CChhHhCcCCCCEEECcCCE-ecccCCHHHhC-CCCCCEEECcCCEeeeE-CChhHhcCCC
Confidence 778888888843 33322 22234456778888888773 22222223333 78899999987777654 3445778899
Q ss_pred CcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcE
Q 003957 578 LQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLIS 657 (784)
Q Consensus 578 L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~ 657 (784)
|+.|++++|............+++|+.|++++| .+... +.... ..++|+.|++++|....... ....++++|+.
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n--~~~~~-~p~~~-~~~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~ 503 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARN--KFFGG-LPDSF-GSKRLENLDLSRNQFSGAVP--RKLGSLSELMQ 503 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCc--eeeee-cCccc-ccccceEEECcCCccCCccC--hhhhhhhccCE
Confidence 999999988322222222335689999999996 33321 11111 34689999999998765322 22345888999
Q ss_pred EeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEE
Q 003957 658 LHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTV 736 (784)
Q Consensus 658 L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L 736 (784)
|+|++|. ++...+..+.++++|++|++++|.+ . ..++..+..+++|+.|++++|... + .+|. +..+++|+.|
T Consensus 504 L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l--~-~~~p~~~~~l~~L~~L~Ls~N~l~-~--~~p~~l~~l~~L~~l 576 (968)
T PLN00113 504 LKLSENK-LSGEIPDELSSCKKLVSLDLSHNQL--S-GQIPASFSEMPVLSQLDLSQNQLS-G--EIPKNLGNVESLVQV 576 (968)
T ss_pred EECcCCc-ceeeCChHHcCccCCCEEECCCCcc--c-ccCChhHhCcccCCEEECCCCccc-c--cCChhHhcCcccCEE
Confidence 9999986 5545556677899999999999965 5 567778889999999999998876 3 3577 8889999999
Q ss_pred EecCCCCc
Q 003957 737 KITKCKSK 744 (784)
Q Consensus 737 ~is~C~~~ 744 (784)
++++|+..
T Consensus 577 ~ls~N~l~ 584 (968)
T PLN00113 577 NISHNHLH 584 (968)
T ss_pred eccCCcce
Confidence 99999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=5.5e-28 Score=297.75 Aligned_cols=398 Identities=18% Similarity=0.114 Sum_probs=248.0
Q ss_pred CCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 288 PSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 288 ~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
..+++|++|++++|...+ .....+ ..+++|++|++++|..... ++..+.++++|+.|++++|.+..
T Consensus 161 ~~l~~L~~L~L~~n~l~~-~~p~~~-~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~---------- 226 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVG-KIPNSL-TNLTSLEFLTLASNQLVGQ--IPRELGQMKSLKWIYLGYNNLSG---------- 226 (968)
T ss_pred hcCCCCCEEECccCcccc-cCChhh-hhCcCCCeeeccCCCCcCc--CChHHcCcCCccEEECcCCccCC----------
Confidence 344555555555543211 111112 2245555555555432111 12223445555555555554432
Q ss_pred CccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCc
Q 003957 368 PYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTM 446 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~ 446 (784)
.+|..+..+++|++|++++|.... .++..+..+++|+.|++++|.+.+..+..+. .++|++|++++|.
T Consensus 227 ---------~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 227 ---------EIPYEIGGLTSLNHLDLVYNNLTG--PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred ---------cCChhHhcCCCCCEEECcCceecc--ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 134445677778888887765421 1222336677788888877776655444444 4677888888776
Q ss_pred cchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcC
Q 003957 447 ISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIK 525 (784)
Q Consensus 447 i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~ 525 (784)
++..... .+..+++|++|++.++... +.....+..+++|+.|++. +.+.. .....+..+.
T Consensus 296 l~~~~p~-~~~~l~~L~~L~l~~n~~~-----------------~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~~~ 356 (968)
T PLN00113 296 LSGEIPE-LVIQLQNLEILHLFSNNFT-----------------GKIPVALTSLPRLQVLQLWSNKFSG-EIPKNLGKHN 356 (968)
T ss_pred eccCCCh-hHcCCCCCcEEECCCCccC-----------------CcCChhHhcCCCCCEEECcCCCCcC-cCChHHhCCC
Confidence 6544332 2356777888877665321 1223356677888888884 33332 2223455677
Q ss_pred cccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccE
Q 003957 526 LLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRK 604 (784)
Q Consensus 526 ~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~ 604 (784)
+|+.|+++++. +.......+. .+++|+.|+++.|.+.+. ++..+..+++|+.|++++| .....+..+ ..+++|+.
T Consensus 357 ~L~~L~Ls~n~-l~~~~p~~~~-~~~~L~~L~l~~n~l~~~-~p~~~~~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~ 432 (968)
T PLN00113 357 NLTVLDLSTNN-LTGEIPEGLC-SSGNLFKLILFSNSLEGE-IPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYF 432 (968)
T ss_pred CCcEEECCCCe-eEeeCChhHh-CcCCCCEEECcCCEeccc-CCHHHhCCCCCCEEECcCCEeeeECChhH-hcCCCCCE
Confidence 88888888773 2211111222 256788888877776654 3455678889999999888 333333333 35589999
Q ss_pred EEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEE
Q 003957 605 LKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLL 684 (784)
Q Consensus 605 L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~ 684 (784)
|+++++ .++.. +......+++|+.|++++|........ . .+.++|+.|++++|. ++...+..+.++++|+.|+
T Consensus 433 L~Ls~N--~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~--~-~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~ 505 (968)
T PLN00113 433 LDISNN--NLQGR-INSRKWDMPSLQMLSLARNKFFGGLPD--S-FGSKRLENLDLSRNQ-FSGAVPRKLGSLSELMQLK 505 (968)
T ss_pred EECcCC--cccCc-cChhhccCCCCcEEECcCceeeeecCc--c-cccccceEEECcCCc-cCCccChhhhhhhccCEEE
Confidence 999984 45532 222334678999999999987542211 1 235789999999987 5545555667889999999
Q ss_pred cccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCcCc
Q 003957 685 LRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 685 L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~~ 746 (784)
+++|.+ . ..+++.+..+++|+.|+|++|... + .+|. +.++++|+.|++++|+....
T Consensus 506 Ls~N~l--~-~~~p~~~~~l~~L~~L~Ls~N~l~-~--~~p~~~~~l~~L~~L~Ls~N~l~~~ 562 (968)
T PLN00113 506 LSENKL--S-GEIPDELSSCKKLVSLDLSHNQLS-G--QIPASFSEMPVLSQLDLSQNQLSGE 562 (968)
T ss_pred CcCCcc--e-eeCChHHcCccCCCEEECCCCccc-c--cCChhHhCcccCCEEECCCCccccc
Confidence 999975 4 567778889999999999998877 3 3466 88999999999999986543
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.92 E-value=1.6e-25 Score=227.97 Aligned_cols=376 Identities=19% Similarity=0.257 Sum_probs=231.1
Q ss_pred cceeeEEeeeeeceeecCCCcchhHHHHHHhhccCcccCCccccccccccccccccCCCCCcCeEEeCcceEEecCCCCC
Q 003957 115 LKHLRIRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFECLDKDQSRIPLGFLPIFSFEAVQEVNICKCHA 194 (784)
Q Consensus 115 ~~~~~~~~~~~~~~~~ls~C~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~c~~ 194 (784)
+.+.-+|++.|+++..+..|.|.++.+.. -+ .|...+..+..|. -+.
T Consensus 76 PpEl~lkvFS~LDtksl~r~a~~c~~~n~-~A------lD~~~~q~idL~t--------------------------~~r 122 (483)
T KOG4341|consen 76 PPELLLKVFSMLDTKSLCRAAQCCTMWNK-LA------LDGSCWQHIDLFT--------------------------FQR 122 (483)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHhhh-hh------hccccceeeehhc--------------------------chh
Confidence 55566889999999999999999987765 22 2333333333332 111
Q ss_pred CChhhHHHHHH-hhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeecCCcccccccccccc
Q 003957 195 LHLESAVECFS-KSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIA 273 (784)
Q Consensus 195 l~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 273 (784)
-.+..++..+. .....|+.|.+.+|..+.+..+..+..+||++++|++. +|.++++....++
T Consensus 123 Dv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~--gc~~iTd~s~~sl--------------- 185 (483)
T KOG4341|consen 123 DVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALY--GCKKITDSSLLSL--------------- 185 (483)
T ss_pred cCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhh--cceeccHHHHHHH---------------
Confidence 11112222222 33357888888888888888888888788888777555 4544443322111
Q ss_pred CCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCC
Q 003957 274 GDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDT 353 (784)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 353 (784)
..++++|++|++..|..+++..++.++.+|++|++|++++|+.++..+++.+.++|.+
T Consensus 186 -------------a~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~--------- 243 (483)
T KOG4341|consen 186 -------------ARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE--------- 243 (483)
T ss_pred -------------HHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh---------
Confidence 1234555555555555556655665666666666666666655555555555544443
Q ss_pred CCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc
Q 003957 354 SFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS 433 (784)
Q Consensus 354 ~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~ 433 (784)
++.+.+.+|...++..+......++-+..+++..|
T Consensus 244 ----------------------------------l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c----------- 278 (483)
T KOG4341|consen 244 ----------------------------------LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC----------- 278 (483)
T ss_pred ----------------------------------hhhhhhcccccccHHHHHHHhccChHhhccchhhh-----------
Confidence 34444445555555555444333333333322222
Q ss_pred cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccC
Q 003957 434 GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFS 513 (784)
Q Consensus 434 ~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 513 (784)
+.+++.++..+..++..|+.|..++|
T Consensus 279 -----------~~lTD~~~~~i~~~c~~lq~l~~s~~------------------------------------------- 304 (483)
T KOG4341|consen 279 -----------NQLTDEDLWLIACGCHALQVLCYSSC------------------------------------------- 304 (483)
T ss_pred -----------ccccchHHHHHhhhhhHhhhhcccCC-------------------------------------------
Confidence 12333343334344444444444444
Q ss_pred cccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEe-eeeccChHHHHHHHhhCCCCcEEEeccc--CChh
Q 003957 514 FLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVL-YFQVMSDSIIINILESLRRLQVLAICHC--LGDL 590 (784)
Q Consensus 514 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L-~~~~i~~~~l~~~~~~l~~L~~L~Ls~c--~~~~ 590 (784)
..+++..+.+++.+|++|+.+.+ .|..+++.++..+..+++.|+.+++..| ..+.
T Consensus 305 ----------------------t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 305 ----------------------TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred ----------------------CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 33444556667777777777777 4677777777777777888888888877 4566
Q ss_pred HHHHhhcCCCCccEEEccCCCCCCChHHHHHHHh---cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCC
Q 003957 591 SISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQ---NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDIT 667 (784)
Q Consensus 591 ~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~---~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~ 667 (784)
++.++...||.|+++.++.| ..++|+++..+.. +...|+.+.+++|+.+++.....+. .|++|+.+++.+|..++
T Consensus 363 tL~sls~~C~~lr~lslshc-e~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 363 TLASLSRNCPRLRVLSLSHC-ELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVT 440 (483)
T ss_pred hHhhhccCCchhccCChhhh-hhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhh
Confidence 67778888888888888888 6788887765543 4556788888888888877766653 57888888888888888
Q ss_pred HHHHHHhh-CCCCCCEEEc
Q 003957 668 AYGVTSLF-NCIALEDLLL 685 (784)
Q Consensus 668 ~~~~~~l~-~~~~L~~L~L 685 (784)
..++..+. ++|+++..-+
T Consensus 441 k~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 441 KEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhHHHHhhCccceehhh
Confidence 77777775 6777766443
No 4
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.90 E-value=3.4e-24 Score=218.33 Aligned_cols=309 Identities=23% Similarity=0.309 Sum_probs=267.3
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC-cCchhhhhhcc--cCCcCEEEecCC-ccchhhHHHHHhcCCC
Q 003957 386 SNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT-QLADKALYNFS--GSSLEMLDVSDT-MISGAALAYMVHGNSG 461 (784)
Q Consensus 386 ~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~-~l~~~~~~~l~--~~~L~~L~Ls~~-~i~~~~l~~~~~~l~~ 461 (784)
..|+.|.+.+|..+.+..+..+..++|++++|.+.+| .+++.....+. ++.|++|++..| .+++..+..+..+|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4689999999999999999888899999999999887 68888877777 789999999997 7899999989999999
Q ss_pred ccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChH
Q 003957 462 LKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGED 541 (784)
Q Consensus 462 L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 541 (784)
|++|++++|..+...+++ .+..++..++.+.+.||..++.+
T Consensus 218 L~~lNlSwc~qi~~~gv~---------------------------------------~~~rG~~~l~~~~~kGC~e~~le 258 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQ---------------------------------------ALQRGCKELEKLSLKGCLELELE 258 (483)
T ss_pred HHHhhhccCchhhcCcch---------------------------------------HHhccchhhhhhhhcccccccHH
Confidence 999999999988876654 23455556677766789899999
Q ss_pred HHHHhhccCCCCcEEEe-eeeccChHHHHHHHhhCCCCcEEEeccc--CChhHHHHhhcCCCCccEEEccCCCCCCChHH
Q 003957 542 ALRLLPTTCPMLELVVL-YFQVMSDSIIINILESLRRLQVLAICHC--LGDLSISSFKLPLPNLRKLKLERVTPWMTNND 618 (784)
Q Consensus 542 ~l~~l~~~~~~L~~L~L-~~~~i~~~~l~~~~~~l~~L~~L~Ls~c--~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~ 618 (784)
.+..+..+++.+.++++ .|+.++|.++..+..++..||.|+.++| .++..+..+...+++|+.|.+.+| ..+++.+
T Consensus 259 ~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c-~~fsd~~ 337 (483)
T KOG4341|consen 259 ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGC-QQFSDRG 337 (483)
T ss_pred HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecccc-chhhhhh
Confidence 99999999999999998 7999999999999999999999999999 688889999999999999999999 6899999
Q ss_pred HHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhh----CCCCCCEEEcccCCCCCCh
Q 003957 619 LVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLF----NCIALEDLLLRHNGPGIPR 694 (784)
Q Consensus 619 l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~----~~~~L~~L~L~~n~~gl~~ 694 (784)
+..+..+|+.|+.+++.+|....+..+..++.+|+.|+.|.+++|..+++.|+..+. ....|+.+.+++|+. +.
T Consensus 338 ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~-i~- 415 (483)
T KOG4341|consen 338 FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL-IT- 415 (483)
T ss_pred hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC-ch-
Confidence 999999999999999999999998888888889999999999999999999988874 577899999999974 55
Q ss_pred hHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEE
Q 003957 695 DFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVK 737 (784)
Q Consensus 695 ~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~ 737 (784)
+...+.+..+++|+.+++.+|...+.. ++.. ...+++++...
T Consensus 416 d~~Le~l~~c~~Leri~l~~~q~vtk~-~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 416 DATLEHLSICRNLERIELIDCQDVTKE-AISRFATHLPNIKVHA 458 (483)
T ss_pred HHHHHHHhhCcccceeeeechhhhhhh-hhHHHHhhCccceehh
Confidence 777777899999999999999888544 3444 55566665543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=3.6e-22 Score=210.45 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=101.4
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCcc
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYC 370 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~ 370 (784)
+.-++|++++|. +.+..+.++- ++++|+.+++..+ .++ .++.+..-..+|+.|+|.+|.|....-.++
T Consensus 78 ~~t~~LdlsnNk-l~~id~~~f~-nl~nLq~v~l~~N-~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L------- 145 (873)
T KOG4194|consen 78 SQTQTLDLSNNK-LSHIDFEFFY-NLPNLQEVNLNKN-ELT--RIPRFGHESGHLEKLDLRHNLISSVTSEEL------- 145 (873)
T ss_pred cceeeeeccccc-cccCcHHHHh-cCCcceeeeeccc-hhh--hcccccccccceeEEeeeccccccccHHHH-------
Confidence 456789999874 5555555543 4888888888774 222 233444445678888888886655333322
Q ss_pred CcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccch
Q 003957 371 NSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISG 449 (784)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~ 449 (784)
..++.|+.|||+.+.. ++...+.+ ....++++|+|++|++++.+...|. ..+|..|.|+.|.++.
T Consensus 146 ------------~~l~alrslDLSrN~i-s~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 146 ------------SALPALRSLDLSRNLI-SEIPKPSF-PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred ------------HhHhhhhhhhhhhchh-hcccCCCC-CCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 5567788888887643 22222222 4557788888888888887777776 4588888888888877
Q ss_pred hhHHHHHhcCCCccEEeccCC
Q 003957 450 AALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 450 ~~l~~~~~~l~~L~~L~L~~c 470 (784)
.....+ +++|.|+.|++...
T Consensus 212 Lp~r~F-k~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 212 LPQRSF-KRLPKLESLDLNRN 231 (873)
T ss_pred cCHHHh-hhcchhhhhhcccc
Confidence 665544 67888888887654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=1e-21 Score=207.02 Aligned_cols=354 Identities=17% Similarity=0.141 Sum_probs=206.5
Q ss_pred CCCEEEeeCCCCCHHHHHHhhccCCcc-----CcccccccchhhhcCCCccEEEecCCCC--CCHHHHHHHHHhCccccE
Q 003957 344 KLQSIIVCDTSFGVYSIRALCSEVPYC-----NSSALCGKRNFNTLASNLQMLHMACCNG--VDGMYLLELMCQARKLKS 416 (784)
Q Consensus 344 ~L~~L~Ls~~~i~~~~l~~l~~~l~~~-----~~~~~~~~~~~~~~l~~L~~L~L~~c~~--l~~~~l~~l~~~~~~L~~ 416 (784)
.-++|++++|.+....+..|. .+.++ +...+..+|.+.....+|+.|+|.++.. ++.+.+ +..+.|++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~-nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L----~~l~alrs 153 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFY-NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL----SALPALRS 153 (873)
T ss_pred ceeeeeccccccccCcHHHHh-cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHH----HhHhhhhh
Confidence 345677777766554444331 11111 1223455666656666677777776533 222222 45577788
Q ss_pred EEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHH
Q 003957 417 LCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFA 495 (784)
Q Consensus 417 L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 495 (784)
|+|+.|.++......|. +.++++|+|++|.|+......+ .++.+|..|.+++. .++.....
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F-~~lnsL~tlkLsrN-rittLp~r---------------- 215 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF-DSLNSLLTLKLSRN-RITTLPQR---------------- 215 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc-cccchheeeecccC-cccccCHH----------------
Confidence 88888777777766666 4778888888887776665555 45567777777664 33332221
Q ss_pred hhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCC--CCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHH
Q 003957 496 ELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLG--GSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINIL 572 (784)
Q Consensus 496 ~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~--~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~ 572 (784)
.+.++++|+.|+|. +.+... ....+.++.+|+.|.+..+ ..+.+..+ -.|..+++|+|..|.+.... ..++
T Consensus 216 ~Fk~L~~L~~LdLnrN~iriv-e~ltFqgL~Sl~nlklqrN~I~kL~DG~F----y~l~kme~l~L~~N~l~~vn-~g~l 289 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIV-EGLTFQGLPSLQNLKLQRNDISKLDDGAF----YGLEKMEHLNLETNRLQAVN-EGWL 289 (873)
T ss_pred Hhhhcchhhhhhccccceeee-hhhhhcCchhhhhhhhhhcCcccccCcce----eeecccceeecccchhhhhh-cccc
Confidence 45557778888874 333222 1223556667777766655 23444333 23556777888776665542 2344
Q ss_pred hhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhc
Q 003957 573 ESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQG 651 (784)
Q Consensus 573 ~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~ 651 (784)
-+++.|+.|++++| +......+ ...+++|+.|+++. +.++..+-..+ ..++.|++|.|+.|++.. ..+....+
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~-WsftqkL~~LdLs~--N~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~--l~e~af~~ 363 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDS-WSFTQKLKELDLSS--NRITRLDEGSF-RVLSQLEELNLSHNSIDH--LAEGAFVG 363 (873)
T ss_pred cccchhhhhccchhhhheeecch-hhhcccceeEeccc--cccccCChhHH-HHHHHhhhhcccccchHH--HHhhHHHH
Confidence 56777888888877 22222222 23457777777777 55654332221 234477777777776432 22333445
Q ss_pred CCCCcEEeecCCCC---CCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-c
Q 003957 652 WPGLISLHLEECGD---ITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-Y 727 (784)
Q Consensus 652 ~~~L~~L~L~~c~~---i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~ 727 (784)
+.+|+.|+|.+|.. |. ++...+.++++|+.|++.+|.+ . .+...++.+++.|+.|+|.+|..- ++ . |. |
T Consensus 364 lssL~~LdLr~N~ls~~IE-Daa~~f~gl~~LrkL~l~gNql--k-~I~krAfsgl~~LE~LdL~~Naia-SI-q-~nAF 436 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIE-DAAVAFNGLPSLRKLRLTGNQL--K-SIPKRAFSGLEALEHLDLGDNAIA-SI-Q-PNAF 436 (873)
T ss_pred hhhhhhhcCcCCeEEEEEe-cchhhhccchhhhheeecCcee--e-ecchhhhccCcccceecCCCCcce-ee-c-cccc
Confidence 67777777777653 22 2444555677777777777765 3 444556777777777777776555 22 1 22 5
Q ss_pred cCCCCCCEEEecC
Q 003957 728 ADRYSLSTVKITK 740 (784)
Q Consensus 728 ~~~~~L~~L~is~ 740 (784)
..+ .|++|.+..
T Consensus 437 e~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 437 EPM-ELKELVMNS 448 (873)
T ss_pred ccc-hhhhhhhcc
Confidence 555 677776654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=5e-19 Score=187.75 Aligned_cols=201 Identities=17% Similarity=0.160 Sum_probs=118.3
Q ss_pred CcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccE
Q 003957 525 KLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRK 604 (784)
Q Consensus 525 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~ 604 (784)
..|++|.+++++ +.-..+.+++. ..+|+.|.++...-+...++..+.++.+|..++++.|.-...+..+. .+++|+.
T Consensus 173 ~~LqtL~Ls~NP-L~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly-~l~~Lrr 249 (1255)
T KOG0444|consen 173 SMLQTLKLSNNP-LNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY-KLRNLRR 249 (1255)
T ss_pred hhhhhhhcCCCh-hhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHh-hhhhhhe
Confidence 344444554442 11122333333 34444455544433333344445566677777777663222233332 3377777
Q ss_pred EEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHH-HhhCCCCCCEE
Q 003957 605 LKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVT-SLFNCIALEDL 683 (784)
Q Consensus 605 L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~-~l~~~~~L~~L 683 (784)
|++++ +.++...+.. ....+|+.|++|.|.... +......+++|+.|.+.+|+ ++-+|++ .++.+.+|+.+
T Consensus 250 LNLS~--N~iteL~~~~--~~W~~lEtLNlSrNQLt~---LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 250 LNLSG--NKITELNMTE--GEWENLETLNLSRNQLTV---LPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred eccCc--CceeeeeccH--HHHhhhhhhccccchhcc---chHHHhhhHHHHHHHhccCc-ccccCCccchhhhhhhHHH
Confidence 77777 6666543321 123477888888877654 22222346777777777655 4444433 34567777777
Q ss_pred EcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCc
Q 003957 684 LLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 684 ~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~ 744 (784)
...+|.+ +..++.+..|+.|+.|.|+.|..+ ++|. +.-++-|+.||++.++.+
T Consensus 322 ~aanN~L----ElVPEglcRC~kL~kL~L~~NrLi----TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 322 HAANNKL----ELVPEGLCRCVKLQKLKLDHNRLI----TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred Hhhcccc----ccCchhhhhhHHHHHhccccccee----echhhhhhcCCcceeeccCCcCc
Confidence 7777766 777777778888888888877776 6777 777778888888877643
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=4.5e-19 Score=188.10 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=45.3
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 626 CSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 626 ~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
++.|+.|.+.+|....+++...+. .+.+|+.+...+|. +. --+..+..|++|+.|.|++|.+ -.+++++.-++
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIG-KL~~Levf~aanN~-LE-lVPEglcRC~kL~kL~L~~NrL----iTLPeaIHlL~ 362 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIG-KLIQLEVFHAANNK-LE-LVPEGLCRCVKLQKLKLDHNRL----ITLPEAIHLLP 362 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchh-hhhhhHHHHhhccc-cc-cCchhhhhhHHHHHhcccccce----eechhhhhhcC
Confidence 334555555444444333333332 24445555554443 11 1123344566666677766665 55666666667
Q ss_pred CCceecccccccc
Q 003957 706 MLRLVSLDLCDAS 718 (784)
Q Consensus 706 ~L~~L~L~~c~~~ 718 (784)
.|+.|++..|+.+
T Consensus 363 ~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 363 DLKVLDLRENPNL 375 (1255)
T ss_pred CcceeeccCCcCc
Confidence 7777777776666
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.66 E-value=8.5e-16 Score=190.29 Aligned_cols=310 Identities=18% Similarity=0.219 Sum_probs=199.6
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCc-cchhhHHHHHhcCCCccE
Q 003957 386 SNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTM-ISGAALAYMVHGNSGLKY 464 (784)
Q Consensus 386 ~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~-i~~~~l~~~~~~l~~L~~ 464 (784)
++|+.|++.+++. ..++.. -...+|+.|+++++.+.......-..++|+.|+|+++. +.... . +..+++|+.
T Consensus 589 ~~Lr~L~~~~~~l---~~lP~~-f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~-ls~l~~Le~ 661 (1153)
T PLN03210 589 PKLRLLRWDKYPL---RCMPSN-FRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--D-LSMATNLET 661 (1153)
T ss_pred cccEEEEecCCCC---CCCCCc-CCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC--c-cccCCcccE
Confidence 3577777766543 111111 13467777777776654332111124677777777652 32211 1 245677777
Q ss_pred EeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHH
Q 003957 465 LNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALR 544 (784)
Q Consensus 465 L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~ 544 (784)
|++.+|..+.. ++..+..+++|+.|+++++......+... .+++|+.|++++|..+.
T Consensus 662 L~L~~c~~L~~-----------------lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~----- 718 (1153)
T PLN03210 662 LKLSDCSSLVE-----------------LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK----- 718 (1153)
T ss_pred EEecCCCCccc-----------------cchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc-----
Confidence 77777765432 22355667777777775432211111111 46789999999985543
Q ss_pred HhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhH-------HHHhhcCCCCccEEEccCCCCCCChH
Q 003957 545 LLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLS-------ISSFKLPLPNLRKLKLERVTPWMTNN 617 (784)
Q Consensus 545 ~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~-------~~~l~~~~~~L~~L~L~~c~~~l~~~ 617 (784)
.++...++|+.|+++.+.+.. ++..+ .+++|++|.+.++..... ........++|+.|++++| +.+..
T Consensus 719 ~~p~~~~nL~~L~L~~n~i~~--lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n-~~l~~- 793 (1153)
T PLN03210 719 SFPDISTNISWLDLDETAIEE--FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI-PSLVE- 793 (1153)
T ss_pred ccccccCCcCeeecCCCcccc--ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC-CCccc-
Confidence 233445679999998777654 22212 467888888877521111 1111223479999999997 44432
Q ss_pred HHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHH
Q 003957 618 DLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFI 697 (784)
Q Consensus 618 ~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~ 697 (784)
++..+.++++|+.|++++|..+...+.. .++++|+.|++++|..+... + ...++|+.|++++|.+ ..+
T Consensus 794 -lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~--p--~~~~nL~~L~Ls~n~i----~~i 861 (1153)
T PLN03210 794 -LPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTF--P--DISTNISDLNLSRTGI----EEV 861 (1153)
T ss_pred -cChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccc--c--ccccccCEeECCCCCC----ccC
Confidence 3344568999999999999877632211 15889999999999876421 1 1356899999999977 678
Q ss_pred HHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCcC
Q 003957 698 LDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 698 ~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~ 745 (784)
+..+..+++|+.|++.+|+.+++ +|. ...+++|+.+++++|.++.
T Consensus 862 P~si~~l~~L~~L~L~~C~~L~~---l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 862 PWWIEKFSNLSFLDMNGCNNLQR---VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred hHHHhcCCCCCEEECCCCCCcCc---cCcccccccCCCeeecCCCcccc
Confidence 88899999999999999999954 465 7788999999999998765
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=2.7e-17 Score=183.15 Aligned_cols=290 Identities=19% Similarity=0.142 Sum_probs=147.7
Q ss_pred hCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCC
Q 003957 410 QARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYP 489 (784)
Q Consensus 410 ~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~ 489 (784)
.-++|+.|+.++|.++ .....+...+|+++++++++++... ..+..|++|+.++.... .++.
T Consensus 217 ~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp--~wi~~~~nle~l~~n~N-~l~~-------------- 278 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLP--EWIGACANLEALNANHN-RLVA-------------- 278 (1081)
T ss_pred cCcchheeeeccCcce-eeccccccccceeeecchhhhhcch--HHHHhcccceEecccch-hHHh--------------
Confidence 3456666666666555 2222233457888888888766544 55567888888877543 2221
Q ss_pred chhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCC--CCChHHHHHhhccCCCCcEEEeeeeccChH
Q 003957 490 CADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGG--SLGEDALRLLPTTCPMLELVVLYFQVMSDS 566 (784)
Q Consensus 490 ~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~--~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~ 566 (784)
++..+....+|+.+.+. +....++. .....++|++|++..+. .+.+..+.... ..|+.|..+++.+...
T Consensus 279 ---lp~ri~~~~~L~~l~~~~nel~yip~--~le~~~sL~tLdL~~N~L~~lp~~~l~v~~---~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 279 ---LPLRISRITSLVSLSAAYNELEYIPP--FLEGLKSLRTLDLQSNNLPSLPDNFLAVLN---ASLNTLNVSSNKLSTL 350 (1081)
T ss_pred ---hHHHHhhhhhHHHHHhhhhhhhhCCC--cccccceeeeeeehhccccccchHHHhhhh---HHHHHHhhhhcccccc
Confidence 22334444445555442 22222211 23335566666666551 12221111110 1133333333333221
Q ss_pred HHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHH
Q 003957 567 IIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQ 645 (784)
Q Consensus 567 ~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~ 645 (784)
. ..--...+.|+.|++.+| .+|..+..+... .+|+.|++++ +.+..-.- ....++..|++|+||||...+ +
T Consensus 351 p-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLsy--NrL~~fpa-s~~~kle~LeeL~LSGNkL~~---L 422 (1081)
T KOG0618|consen 351 P-SYEENNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLSY--NRLNSFPA-SKLRKLEELEELNLSGNKLTT---L 422 (1081)
T ss_pred c-cccchhhHHHHHHHHhcCcccccchhhhccc-cceeeeeecc--cccccCCH-HHHhchHHhHHHhcccchhhh---h
Confidence 0 000012234666666666 455555444433 6777777776 44432111 122345567777777776655 2
Q ss_pred HHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcc
Q 003957 646 LIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIP 725 (784)
Q Consensus 646 ~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~ 725 (784)
..-...|+.|+.|...+|.... ++.+..++.|+.+|++.|.+ +...+++.+.. ++|++|+++||.... ++..
T Consensus 423 p~tva~~~~L~tL~ahsN~l~~---fPe~~~l~qL~~lDlS~N~L--~~~~l~~~~p~-p~LkyLdlSGN~~l~--~d~~ 494 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHSNQLLS---FPELAQLPQLKVLDLSCNNL--SEVTLPEALPS-PNLKYLDLSGNTRLV--FDHK 494 (1081)
T ss_pred hHHHHhhhhhHHHhhcCCceee---chhhhhcCcceEEecccchh--hhhhhhhhCCC-cccceeeccCCcccc--cchh
Confidence 2233356777777666554322 22455677777888877754 43333444333 678888888776541 1112
Q ss_pred cccCCCCCCEEEecCC
Q 003957 726 DYADRYSLSTVKITKC 741 (784)
Q Consensus 726 ~~~~~~~L~~L~is~C 741 (784)
.++.++.+...++.-.
T Consensus 495 ~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 495 TLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhHHhhhhhheecccC
Confidence 2666666666666655
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=5.3e-14 Score=151.04 Aligned_cols=61 Identities=21% Similarity=0.107 Sum_probs=28.9
Q ss_pred CCCcEEeecCCCCCCHHHHHHh----hCCCCCCEEEcccCCCCCChhH---HHHHHhcC-CCCceecccccc
Q 003957 653 PGLISLHLEECGDITAYGVTSL----FNCIALEDLLLRHNGPGIPRDF---ILDAASKM-PMLRLVSLDLCD 716 (784)
Q Consensus 653 ~~L~~L~L~~c~~i~~~~~~~l----~~~~~L~~L~L~~n~~gl~~~~---~~~~l~~l-~~L~~L~L~~c~ 716 (784)
+.|+.|++++|. +++.+...+ ..+++|+.+++++|.+ ++.. ..+.+... +.|++|++.+++
T Consensus 250 ~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKF--GEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCC--cHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 456666665554 443333222 2345666666666644 3221 12223333 456666665543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=7.7e-17 Score=179.55 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=57.4
Q ss_pred cceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeecCCccccccccccccCCCcccccccccCCCCC
Q 003957 211 LRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSP 290 (784)
Q Consensus 211 L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 290 (784)
+..|++..+..++ .++..+ +++-+|+.||++++....+| ..++.+
T Consensus 23 ~~~ln~~~N~~l~-~pl~~~-~~~v~L~~l~lsnn~~~~fp---------------------------------~~it~l 67 (1081)
T KOG0618|consen 23 LQILNLRRNSLLS-RPLEFV-EKRVKLKSLDLSNNQISSFP---------------------------------IQITLL 67 (1081)
T ss_pred HHhhhcccccccc-CchHHh-hheeeeEEeeccccccccCC---------------------------------chhhhH
Confidence 6666666643333 233333 34445777777765443332 224556
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCH
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGV 357 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~ 357 (784)
++|+.|+++.|.. .. .+.-.....+|++++|.++. +. .+++-+...++|+.|++++|.++.
T Consensus 68 ~~L~~ln~s~n~i-~~--vp~s~~~~~~l~~lnL~~n~-l~--~lP~~~~~lknl~~LdlS~N~f~~ 128 (1081)
T KOG0618|consen 68 SHLRQLNLSRNYI-RS--VPSSCSNMRNLQYLNLKNNR-LQ--SLPASISELKNLQYLDLSFNHFGP 128 (1081)
T ss_pred HHHhhcccchhhH-hh--Cchhhhhhhcchhheeccch-hh--cCchhHHhhhcccccccchhccCC
Confidence 7777777776632 11 11222335677777776532 21 223334456777788888776665
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.60 E-value=1.1e-13 Score=148.45 Aligned_cols=87 Identities=21% Similarity=0.211 Sum_probs=43.2
Q ss_pred CCCccEEEccCCCCCCChHHHHHHHhc----CCCCcEEEecCCCCCChHH--HHHHHhcCCCCcEEeecCCCCCCHHHHH
Q 003957 599 LPNLRKLKLERVTPWMTNNDLVILTQN----CSELVELSLVGCTLLSSDS--QLIISQGWPGLISLHLEECGDITAYGVT 672 (784)
Q Consensus 599 ~~~L~~L~L~~c~~~l~~~~l~~l~~~----~~~L~~L~Ls~c~~~~~~~--~~~~~~~~~~L~~L~L~~c~~i~~~~~~ 672 (784)
+++|++|++++| .+++.++..+... .+.|++|++++|.+..... .......+++|+.+++++|. +++.+..
T Consensus 220 ~~~L~~L~ls~n--~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~ 296 (319)
T cd00116 220 LKSLEVLNLGDN--NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQ 296 (319)
T ss_pred cCCCCEEecCCC--cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHH
Confidence 355555555553 3555444443333 2466666666665443222 11122234566666666655 5544333
Q ss_pred Hh----hCC-CCCCEEEcccC
Q 003957 673 SL----FNC-IALEDLLLRHN 688 (784)
Q Consensus 673 ~l----~~~-~~L~~L~L~~n 688 (784)
.+ ... +.|++|++.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHhhcCCchhhcccCCC
Confidence 32 122 46666666665
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.3e-14 Score=142.20 Aligned_cols=248 Identities=21% Similarity=0.222 Sum_probs=181.8
Q ss_pred CccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc---cCCcCEEEecCCccchhhHHHHHhcCCCcc
Q 003957 387 NLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS---GSSLEMLDVSDTMISGAALAYMVHGNSGLK 463 (784)
Q Consensus 387 ~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~---~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~ 463 (784)
.-+.+|+.+-+ +....+..+. -.....+.+....+.+..+.... -+.|++|||++..++...+..++..|.+|+
T Consensus 137 lW~~lDl~~r~-i~p~~l~~l~--~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk 213 (419)
T KOG2120|consen 137 LWQTLDLTGRN-IHPDVLGRLL--SRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLK 213 (419)
T ss_pred ceeeeccCCCc-cChhHHHHHH--hCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhh
Confidence 34677776643 3444554442 23455666665555444332222 357999999999999888888888888888
Q ss_pred EEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHH
Q 003957 464 YLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDAL 543 (784)
Q Consensus 464 ~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l 543 (784)
.|.+.|. .+.+...
T Consensus 214 ~lSlEg~------------------------------------------------------------------~LdD~I~ 227 (419)
T KOG2120|consen 214 NLSLEGL------------------------------------------------------------------RLDDPIV 227 (419)
T ss_pred hcccccc------------------------------------------------------------------ccCcHHH
Confidence 8887653 2233344
Q ss_pred HHhhccCCCCcEEEee-eeccChHHHHHHHhhCCCCcEEEecccC--ChhHHHHhhcCCCCccEEEccCCCCCCChHHHH
Q 003957 544 RLLPTTCPMLELVVLY-FQVMSDSIIINILESLRRLQVLAICHCL--GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLV 620 (784)
Q Consensus 544 ~~l~~~~~~L~~L~L~-~~~i~~~~l~~~~~~l~~L~~L~Ls~c~--~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~ 620 (784)
..+++ -.+|+.|+++ |++++..++.-++.+|+.|++|++++|+ .+..-..+...-++|+.|+|+||...+.+..+.
T Consensus 228 ~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 228 NTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred HHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 44554 4568888884 7888888899999999999999999993 333333344555899999999985455666778
Q ss_pred HHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHH
Q 003957 621 ILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDA 700 (784)
Q Consensus 621 ~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~ 700 (784)
.+...||+|.+|||++|..+++.....+ ..++.|++|.++.|..|.+..+..+...|+|.+||+-+| ++|....-.
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~---vsdt~mel~ 382 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC---VSDTTMELL 382 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHH-HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc---cCchHHHHH
Confidence 8889999999999999999988665555 469999999999999998887777788999999999887 565555555
Q ss_pred HhcCCCCc
Q 003957 701 ASKMPMLR 708 (784)
Q Consensus 701 l~~l~~L~ 708 (784)
...+++|+
T Consensus 383 ~e~~~~lk 390 (419)
T KOG2120|consen 383 KEMLSHLK 390 (419)
T ss_pred HHhCcccc
Confidence 56667665
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.49 E-value=1.4e-13 Score=170.64 Aligned_cols=129 Identities=12% Similarity=0.042 Sum_probs=55.0
Q ss_pred CCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEee-eeccChHHHHHHHhhCCCCc
Q 003957 501 RKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLY-FQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 501 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~-~~~i~~~~l~~~~~~l~~L~ 579 (784)
++|+.|+++.+......+..+..+++|+.|++++|..+..-. .. ..+++|+.|+++ |+.+.. + ....++|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP--~~-~~L~sL~~L~Ls~c~~L~~--~---p~~~~nL~ 849 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP--TG-INLESLESLDLSGCSRLRT--F---PDISTNIS 849 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC--CC-CCccccCEEECCCCCcccc--c---cccccccC
Confidence 445555553322211122224445555555555554332210 00 024555555553 333321 1 11124555
Q ss_pred EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCC
Q 003957 580 VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLS 641 (784)
Q Consensus 580 ~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~ 641 (784)
.|+++++.....+.++ ..+++|+.|++.+| +.+.. +......+++|+.+++++|..+.
T Consensus 850 ~L~Ls~n~i~~iP~si-~~l~~L~~L~L~~C-~~L~~--l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 850 DLNLSRTGIEEVPWWI-EKFSNLSFLDMNGC-NNLQR--VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred EeECCCCCCccChHHH-hcCCCCCEEECCCC-CCcCc--cCcccccccCCCeeecCCCcccc
Confidence 6666555222222222 23356666666666 44432 22122345566666666665443
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.48 E-value=9.5e-17 Score=163.02 Aligned_cols=110 Identities=18% Similarity=0.121 Sum_probs=70.3
Q ss_pred HhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHh
Q 003957 623 TQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAAS 702 (784)
Q Consensus 623 ~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~ 702 (784)
...+++|+.|++++|..- +.+.+. .++..|+.|+++.+.. . ..+..+.....++.+-.+.|.+ + ...++.+.
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~--~~lv~Lq~LnlS~NrF-r-~lP~~~y~lq~lEtllas~nqi--~-~vd~~~l~ 502 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEM--GSLVRLQTLNLSFNRF-R-MLPECLYELQTLETLLASNNQI--G-SVDPSGLK 502 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhh--hhhhhhheeccccccc-c-cchHHHhhHHHHHHHHhccccc--c-ccChHHhh
Confidence 345667778888776432 222222 2355677888777642 1 1122222344455555555654 3 33344578
Q ss_pred cCCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCc
Q 003957 703 KMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 703 ~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~ 744 (784)
++.+|..|++++|... .+|+ ++++.+|++|++++++..
T Consensus 503 nm~nL~tLDL~nNdlq----~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQ----QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhcceeccCCCchh----hCChhhccccceeEEEecCCccC
Confidence 8899999999988777 6788 999999999999999854
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.47 E-value=3.5e-16 Score=158.99 Aligned_cols=464 Identities=16% Similarity=0.076 Sum_probs=238.4
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.++.+..++++++........+. ....++.|+.++ +++. .-++++. ..+.|..|+.+++.-..+++....
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig----~l~~l~~l~vs~-n~ls-~lp~~i~-s~~~l~~l~~s~n~~~el~~~i~~--- 135 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIG----ELEALKSLNVSH-NKLS-ELPEQIG-SLISLVKLDCSSNELKELPDSIGR--- 135 (565)
T ss_pred cccceeEEEeccchhhhCCHHHH----HHHHHHHhhccc-chHh-hccHHHh-hhhhhhhhhccccceeecCchHHH---
Confidence 56677788888776555544432 334566777777 4443 2233443 666777777776653333322100
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLI 339 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~ 339 (784)
...-.+........++.|+....+.+|..|++.++.. +......+ +.+.|++|+...+ .++ .++.-+
T Consensus 136 -------~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i--~m~~L~~ld~~~N-~L~--tlP~~l 202 (565)
T KOG0472|consen 136 -------LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHI--AMKRLKHLDCNSN-LLE--TLPPEL 202 (565)
T ss_pred -------HhhhhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHH--HHHHHHhcccchh-hhh--cCChhh
Confidence 0000000011111112222233344444444444421 11111111 1334555544331 111 111222
Q ss_pred HhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHH-HHHhCccccEEE
Q 003957 340 RRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLE-LMCQARKLKSLC 418 (784)
Q Consensus 340 ~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~-l~~~~~~L~~L~ 418 (784)
+.+.+|.-|++..|.+.. +| .+..|..|++|+++.++. ..++. ..+.++.+..|+
T Consensus 203 g~l~~L~~LyL~~Nki~~--------------------lP-ef~gcs~L~Elh~g~N~i---~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRF--------------------LP-EFPGCSLLKELHVGENQI---EMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred cchhhhHHHHhhhccccc--------------------CC-CCCccHHHHHHHhcccHH---HhhHHHHhcccccceeee
Confidence 333444445555544433 44 347788888888877654 22332 346889999999
Q ss_pred ecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhh
Q 003957 419 LSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELG 498 (784)
Q Consensus 419 Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (784)
+..|.+.....+.....+|++||+|+|.++.... -..++ .|+.|.+.|.+--+- ....-.-+++++...+.
T Consensus 259 LRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~--sLgnl-hL~~L~leGNPlrTi------Rr~ii~~gT~~vLKyLr 329 (565)
T KOG0472|consen 259 LRDNKLKEVPDEICLLRSLERLDLSNNDISSLPY--SLGNL-HLKFLALEGNPLRTI------RREIISKGTQEVLKYLR 329 (565)
T ss_pred ccccccccCchHHHHhhhhhhhcccCCccccCCc--ccccc-eeeehhhcCCchHHH------HHHHHcccHHHHHHHHH
Confidence 9999988776665556889999999998875432 22344 778888777642110 00000000122211111
Q ss_pred cCCCccEEEecc--c--cCccc-Hhhhh---hhcCcccEEEecCC--CCCChHHHHHhhccCCCCcEEEeeeeccChHHH
Q 003957 499 RTRKLEEIVLGW--G--FSFLS-LEVLK---PAIKLLHSITVGLG--GSLGEDALRLLPTTCPMLELVVLYFQVMSDSII 568 (784)
Q Consensus 499 ~l~~L~~L~L~~--~--~~~~~-~~~~~---~~l~~L~~L~L~~~--~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l 568 (784)
. +.+.=.++. + .+..+ ....+ ....+.+.|++++- +.++++.+.+... .-....+++.|.+.. +
T Consensus 330 s--~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~--~~Vt~VnfskNqL~e--l 403 (565)
T KOG0472|consen 330 S--KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKS--EIVTSVNFSKNQLCE--L 403 (565)
T ss_pred H--hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhh--cceEEEecccchHhh--h
Confidence 1 000000000 0 00000 00011 11234566666543 3355555554432 124455666555443 2
Q ss_pred HHHHhhCC-CCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHH
Q 003957 569 INILESLR-RLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLI 647 (784)
Q Consensus 569 ~~~~~~l~-~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~ 647 (784)
+.-+..++ ....+.++.+..+.... +...+++|..|++++ +.+.+.... ...+..|+.|+++.|+.-. ...
T Consensus 404 Pk~L~~lkelvT~l~lsnn~isfv~~-~l~~l~kLt~L~L~N--N~Ln~LP~e--~~~lv~Lq~LnlS~NrFr~---lP~ 475 (565)
T KOG0472|consen 404 PKRLVELKELVTDLVLSNNKISFVPL-ELSQLQKLTFLDLSN--NLLNDLPEE--MGSLVRLQTLNLSFNRFRM---LPE 475 (565)
T ss_pred hhhhHHHHHHHHHHHhhcCccccchH-HHHhhhcceeeeccc--chhhhcchh--hhhhhhhheeccccccccc---chH
Confidence 22122222 22344555553333222 333458899999988 556543333 2345579999999986433 111
Q ss_pred HHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 648 ISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 648 ~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
.......|+. .+..++++....+..++++.+|..||+..|.+ ..+|..++++.+|+.|.+++|+.-
T Consensus 476 ~~y~lq~lEt-llas~nqi~~vd~~~l~nm~nL~tLDL~nNdl----q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 CLYELQTLET-LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL----QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhHHHHHH-HHhccccccccChHHhhhhhhcceeccCCCch----hhCChhhccccceeEEEecCCccC
Confidence 1111222333 34454557776677778899999999999987 899999999999999999999876
No 18
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.4e-13 Score=135.21 Aligned_cols=138 Identities=19% Similarity=0.246 Sum_probs=106.1
Q ss_pred CCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCC
Q 003957 318 SLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCN 397 (784)
Q Consensus 318 ~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 397 (784)
.|++++|+. ..++...+..++..|.+|+.|.+.++.+.+.-...+ +.-.+|+.|+|+.|.
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-------------------AkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-------------------AKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-------------------hccccceeecccccc
Confidence 588999987 677888888889999999999999999888655443 567789999999999
Q ss_pred CCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc---cCCcCEEEecCC--ccchhhHHHHHhcCCCccEEeccCCCc
Q 003957 398 GVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS---GSSLEMLDVSDT--MISGAALAYMVHGNSGLKYLNARGCKN 472 (784)
Q Consensus 398 ~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~---~~~L~~L~Ls~~--~i~~~~l~~~~~~l~~L~~L~L~~c~~ 472 (784)
+++..++.-++..|+.|..|+|+||.++...+...+ +++|+.|+|+|+ ++...-+..+.++||+|.+|++++|..
T Consensus 246 G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 246 GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 999999999999999999999999976655444433 567777777776 344444555566667777777666655
Q ss_pred ccc
Q 003957 473 LFQ 475 (784)
Q Consensus 473 l~~ 475 (784)
+++
T Consensus 326 l~~ 328 (419)
T KOG2120|consen 326 LKN 328 (419)
T ss_pred cCc
Confidence 543
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=1.5e-11 Score=124.22 Aligned_cols=100 Identities=17% Similarity=0.241 Sum_probs=55.2
Q ss_pred HHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCC--CCCHHHHHH---H---
Q 003957 336 SNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCN--GVDGMYLLE---L--- 407 (784)
Q Consensus 336 ~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~--~l~~~~l~~---l--- 407 (784)
.........++.+++++|.++......++..+ ...++|+..++++.- ...+..... +
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L---------------~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~a 87 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVL---------------ASKKELREVNLSDMFTGRLKDEIPEALKMLSKA 87 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHH---------------hhcccceeeehHhhhcCCcHHHHHHHHHHHHHH
Confidence 33444557788888888888888777765433 445577777776542 111111111 1
Q ss_pred HHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 408 MCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 408 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
...+|+|+.|+||+|.+...++ .++..+++.+.+|++|.+.+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~--------------------~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGI--------------------RGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred HhcCCceeEeeccccccCccch--------------------HHHHHHHHhccCHHHHhhhcC
Confidence 1234444444444444433332 234455566777777777666
No 20
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.23 E-value=1.4e-11 Score=140.26 Aligned_cols=158 Identities=22% Similarity=0.342 Sum_probs=93.2
Q ss_pred CccEEecCCCCC-CChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCC--CCCHHHHHHhhccCC
Q 003957 292 KITKLTLEGRSD-MCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDT--SFGVYSIRALCSEVP 368 (784)
Q Consensus 292 ~L~~L~Ls~~~~-l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~--~i~~~~l~~l~~~l~ 368 (784)
.++.+....+.. +.......+...++.|+.+.+.+|..+++.++..+...|+.|+.|+++++ .+...+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------- 234 (482)
T KOG1947|consen 162 NLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL------- 234 (482)
T ss_pred HHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH-------
Confidence 344444443332 33444555666688888888888888888777788888888888888773 22221111
Q ss_pred ccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCc-Cchhhhhhcc--cCCcCEEEecCC
Q 003957 369 YCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQ-LADKALYNFS--GSSLEMLDVSDT 445 (784)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~-l~~~~~~~l~--~~~L~~L~Ls~~ 445 (784)
.......+++|+.|++++|..++|.++..+...|++|+.|.+.+|. +++.++..+. ++.|++|++++|
T Consensus 235 ---------~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 235 ---------LLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred ---------hhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 0112355677888888887777777777776667777776655554 4544444443 344444444444
Q ss_pred -ccchhhHHHHHhcCCCccEE
Q 003957 446 -MISGAALAYMVHGNSGLKYL 465 (784)
Q Consensus 446 -~i~~~~l~~~~~~l~~L~~L 465 (784)
.+++.++..+...|++|+.|
T Consensus 306 ~~~~d~~l~~~~~~c~~l~~l 326 (482)
T KOG1947|consen 306 HGLTDSGLEALLKNCPNLREL 326 (482)
T ss_pred ccchHHHHHHHHHhCcchhhh
Confidence 23344444444444444443
No 21
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.21 E-value=6.1e-11 Score=135.06 Aligned_cols=180 Identities=23% Similarity=0.349 Sum_probs=98.7
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC--cCchhh--hhhcc--cCCcCEEEecCCc-cchhhHHHH
Q 003957 383 TLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT--QLADKA--LYNFS--GSSLEMLDVSDTM-ISGAALAYM 455 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~--~l~~~~--~~~l~--~~~L~~L~Ls~~~-i~~~~l~~~ 455 (784)
..++.|+.+.+.+|..+++..+..+...+++|+.|+++.+ .....+ ...+. +.+|+.|+++++. +++.++..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 4477888888888888877776666677888888887763 111111 01111 3445555555543 555555555
Q ss_pred HhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCC
Q 003957 456 VHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLG 535 (784)
Q Consensus 456 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 535 (784)
...|++|++|.+.+|.
T Consensus 265 ~~~c~~L~~L~l~~c~---------------------------------------------------------------- 280 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCS---------------------------------------------------------------- 280 (482)
T ss_pred HhhCCCcceEccCCCC----------------------------------------------------------------
Confidence 4445555555544443
Q ss_pred CCCChHHHHHhhccCCCCcEEEee-eeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCC
Q 003957 536 GSLGEDALRLLPTTCPMLELVVLY-FQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWM 614 (784)
Q Consensus 536 ~~l~~~~l~~l~~~~~~L~~L~L~-~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l 614 (784)
.+++.++..+...|++|++|+++ |..+++.++..+..+|++|+.|.+..+.. |+.++.+.+.+| ...
T Consensus 281 -~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~l~~~~l~~~-~~~ 348 (482)
T KOG1947|consen 281 -NLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPSLTDLSLSGL-LTL 348 (482)
T ss_pred -ccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------CccHHHHHHHHh-hcc
Confidence 34445555666666666666663 55556666666666666666655443311 344444555444 222
Q ss_pred C-hHHHHHHHhcCCCCcEEEecCCC
Q 003957 615 T-NNDLVILTQNCSELVELSLVGCT 638 (784)
Q Consensus 615 ~-~~~l~~l~~~~~~L~~L~Ls~c~ 638 (784)
. +........+|+.++.+.+..|.
T Consensus 349 ~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 349 TSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred CchhHhHHHHhcCCCcchhhhhhhh
Confidence 2 23333444555566666655555
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=5.1e-10 Score=113.25 Aligned_cols=114 Identities=24% Similarity=0.311 Sum_probs=53.6
Q ss_pred CCCccEEEccCCCCCCChHHHH---HHHhcCCCCcEEEecCCCCCChHH--HHHHHhcCCCCcEEeecCCCCCCHHHHHH
Q 003957 599 LPNLRKLKLERVTPWMTNNDLV---ILTQNCSELVELSLVGCTLLSSDS--QLIISQGWPGLISLHLEECGDITAYGVTS 673 (784)
Q Consensus 599 ~~~L~~L~L~~c~~~l~~~~l~---~l~~~~~~L~~L~Ls~c~~~~~~~--~~~~~~~~~~L~~L~L~~c~~i~~~~~~~ 673 (784)
.|.|+.+++.. +.|..+++. .-+..|++|+.||+..|-....++ +......|+.|+.|++.+|. +...|...
T Consensus 184 ~~~leevr~~q--N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a 260 (382)
T KOG1909|consen 184 HPTLEEVRLSQ--NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIA 260 (382)
T ss_pred ccccceEEEec--ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHH
Confidence 35555555555 344444332 222345555555555554443322 22223345556666666665 33333333
Q ss_pred h----h-CCCCCCEEEcccCCCCCChhHHH---HHHhcCCCCceeccccccc
Q 003957 674 L----F-NCIALEDLLLRHNGPGIPRDFIL---DAASKMPMLRLVSLDLCDA 717 (784)
Q Consensus 674 l----~-~~~~L~~L~L~~n~~gl~~~~~~---~~l~~l~~L~~L~L~~c~~ 717 (784)
+ . ..|.|+.|++.+|.+ ..+... ..+...|.|+.|+|++|..
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeI--t~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEI--TRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchh--HHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3 1 355666666666643 222211 1133456666666666655
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.02 E-value=4.5e-10 Score=130.04 Aligned_cols=92 Identities=18% Similarity=0.124 Sum_probs=58.9
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
.+-..|+++++.++. +|..+ .++|+.|++.+|... .++ ...++|+.|++++|
T Consensus 201 ~~~~~LdLs~~~Lts--------------------LP~~l--~~~L~~L~L~~N~Lt---~LP---~lp~~Lk~LdLs~N 252 (788)
T PRK15387 201 NGNAVLNVGESGLTT--------------------LPDCL--PAHITTLVIPDNNLT---SLP---ALPPELRTLEVSGN 252 (788)
T ss_pred CCCcEEEcCCCCCCc--------------------CCcch--hcCCCEEEccCCcCC---CCC---CCCCCCcEEEecCC
Confidence 567788888887764 33322 247888888876542 122 23578888888888
Q ss_pred cCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 423 QLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 423 ~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
.++.... + .++|+.|++++|.++... . ...+|+.|++.++
T Consensus 253 ~LtsLP~--l-p~sL~~L~Ls~N~L~~Lp--~---lp~~L~~L~Ls~N 292 (788)
T PRK15387 253 QLTSLPV--L-PPGLLELSIFSNPLTHLP--A---LPSGLCKLWIFGN 292 (788)
T ss_pred ccCcccC--c-ccccceeeccCCchhhhh--h---chhhcCEEECcCC
Confidence 7775431 1 367888888888765322 1 2256777877665
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.98 E-value=7.8e-10 Score=128.08 Aligned_cols=256 Identities=18% Similarity=0.094 Sum_probs=139.1
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEE
Q 003957 386 SNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYL 465 (784)
Q Consensus 386 ~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L 465 (784)
.+-..|+++++.. + .++.- -.++|+.|++.+|.++.... ..++|++|++++|+++... ...++|+.|
T Consensus 201 ~~~~~LdLs~~~L-t--sLP~~--l~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP-----~lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGL-T--TLPDC--LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP-----VLPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCC-C--cCCcc--hhcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCccc-----Cccccccee
Confidence 3466788887744 2 22221 12478889998887775431 1478999999988776432 123678888
Q ss_pred eccCCCccccccccccccccCCCCchhhHHhhhc-CCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHH
Q 003957 466 NARGCKNLFQQESNGRGIEFSSYPCADLFAELGR-TRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDAL 543 (784)
Q Consensus 466 ~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l 543 (784)
++.++. ++. +.. ...|+.|++ ++.+...+. ..++|+.|+++++ .+.
T Consensus 268 ~Ls~N~-L~~---------------------Lp~lp~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N-~L~---- 315 (788)
T PRK15387 268 SIFSNP-LTH---------------------LPALPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDN-QLA---- 315 (788)
T ss_pred eccCCc-hhh---------------------hhhchhhcCEEECcCCccccccc-----cccccceeECCCC-ccc----
Confidence 887652 221 111 134666777 333332211 2346777777765 222
Q ss_pred HHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHH
Q 003957 544 RLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILT 623 (784)
Q Consensus 544 ~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~ 623 (784)
.++...++|+.|+++.|.++. ++. ...+|+.|++++|.-.. +....++|+.|++.+ +.++. ++.
T Consensus 316 -~Lp~lp~~L~~L~Ls~N~L~~--LP~---lp~~Lq~LdLS~N~Ls~----LP~lp~~L~~L~Ls~--N~L~~--LP~-- 379 (788)
T PRK15387 316 -SLPALPSELCKLWAYNNQLTS--LPT---LPSGLQELSVSDNQLAS----LPTLPSELYKLWAYN--NRLTS--LPA-- 379 (788)
T ss_pred -cCCCCcccccccccccCcccc--ccc---cccccceEecCCCccCC----CCCCCcccceehhhc--ccccc--Ccc--
Confidence 122223456667776666553 221 11367777777762111 111124666676666 44542 221
Q ss_pred hcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhc
Q 003957 624 QNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASK 703 (784)
Q Consensus 624 ~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~ 703 (784)
...+|+.|++++|.+.. .. ...++|+.|++++|. ++.. +. ...+|+.|++++|.+ ..+++.+..
T Consensus 380 -l~~~L~~LdLs~N~Lt~---LP---~l~s~L~~LdLS~N~-LssI--P~--l~~~L~~L~Ls~NqL----t~LP~sl~~ 443 (788)
T PRK15387 380 -LPSGLKELIVSGNRLTS---LP---VLPSELKELMVSGNR-LTSL--PM--LPSGLLSLSVYRNQL----TRLPESLIH 443 (788)
T ss_pred -cccccceEEecCCcccC---CC---CcccCCCEEEccCCc-CCCC--Cc--chhhhhhhhhccCcc----cccChHHhh
Confidence 12367777777765442 00 113457777777765 3321 11 123566677777765 456666666
Q ss_pred CCCCceecccccccc
Q 003957 704 MPMLRLVSLDLCDAS 718 (784)
Q Consensus 704 l~~L~~L~L~~c~~~ 718 (784)
+++|+.|++++|+..
T Consensus 444 L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 444 LSSETTVNLEGNPLS 458 (788)
T ss_pred ccCCCeEECCCCCCC
Confidence 777777777776654
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.2e-10 Score=120.79 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=75.4
Q ss_pred cCCCCcEEEeeeeccCh-HHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcC
Q 003957 549 TCPMLELVVLYFQVMSD-SIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNC 626 (784)
Q Consensus 549 ~~~~L~~L~L~~~~i~~-~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~ 626 (784)
.||+++.|+++.|-+.. ..+..+++.+|+|+.|+++.|. ....-......+++|+.|.++.| .++...+......|
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C--Gls~k~V~~~~~~f 221 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC--GLSWKDVQWILLTF 221 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccC--CCCHHHHHHHHHhC
Confidence 35555555555443332 2244455555566666555551 10000111113355666666665 35555555555556
Q ss_pred CCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHH-----H
Q 003957 627 SELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDA-----A 701 (784)
Q Consensus 627 ~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~-----l 701 (784)
|+|+.|.+.+|..+.... .-..-+..|+.|+|++++.++-......+.+|.|+.|+++.|++ ++-..+++ .
T Consensus 222 Psl~~L~L~~N~~~~~~~--~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi--~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKA--TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI--ASIAEPDVESLDKT 297 (505)
T ss_pred CcHHHhhhhcccccceec--chhhhhhHHhhccccCCcccccccccccccccchhhhhccccCc--chhcCCCccchhhh
Confidence 666666666553221110 00111334556666665555444333444555666666655532 21112222 3
Q ss_pred hcCCCCceeccccccc
Q 003957 702 SKMPMLRLVSLDLCDA 717 (784)
Q Consensus 702 ~~l~~L~~L~L~~c~~ 717 (784)
..+++|+.|.+..|+.
T Consensus 298 ~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNI 313 (505)
T ss_pred cccccceeeecccCcc
Confidence 4455566666655544
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.83 E-value=9.3e-10 Score=112.72 Aligned_cols=270 Identities=20% Similarity=0.182 Sum_probs=146.6
Q ss_pred cccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCch
Q 003957 413 KLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCA 491 (784)
Q Consensus 413 ~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~ 491 (784)
.-..++|..|.|+..+..+|. .++|++|||++|+|+..+..++ +++++|..|-+.+...|++..-.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF-~GL~~l~~Lvlyg~NkI~~l~k~------------ 134 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF-KGLASLLSLVLYGNNKITDLPKG------------ 134 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhh-hhhHhhhHHHhhcCCchhhhhhh------------
Confidence 345566666777766666666 5677777777777776666555 57777777776665566653311
Q ss_pred hhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecC--CCCCChHHHHHhhccCCCCcEEEeeeeccChHHHH
Q 003957 492 DLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGL--GGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIII 569 (784)
Q Consensus 492 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~--~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~ 569 (784)
. +.++.+|+.|.+.. +.-+..+.+.. +++|..|.+..|.+... -.
T Consensus 135 -~---------------------------F~gL~slqrLllNan~i~Cir~~al~d----L~~l~lLslyDn~~q~i-~~ 181 (498)
T KOG4237|consen 135 -A---------------------------FGGLSSLQRLLLNANHINCIRQDALRD----LPSLSLLSLYDNKIQSI-CK 181 (498)
T ss_pred -H---------------------------hhhHHHHHHHhcChhhhcchhHHHHHH----hhhcchhcccchhhhhh-cc
Confidence 1 22222333332222 22233333433 44566666654443321 11
Q ss_pred HHHhhCCCCcEEEecccC--ChhHHHHhhc----------CCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEE--Ee-
Q 003957 570 NILESLRRLQVLAICHCL--GDLSISSFKL----------PLPNLRKLKLERVTPWMTNNDLVILTQNCSELVEL--SL- 634 (784)
Q Consensus 570 ~~~~~l~~L~~L~Ls~c~--~~~~~~~l~~----------~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L--~L- 634 (784)
..++++..++.+++..+. .+-.+...+. .........+.+ ..+....-..+. | +++.+ .+
T Consensus 182 ~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~--~Ri~q~~a~kf~--c-~~esl~s~~~ 256 (498)
T KOG4237|consen 182 GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY--KRINQEDARKFL--C-SLESLPSRLS 256 (498)
T ss_pred ccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH--HHhcccchhhhh--h-hHHhHHHhhc
Confidence 134556677777776551 1111111110 000011111111 001100000111 1 12222 12
Q ss_pred cCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHH-HHhcCCCCceeccc
Q 003957 635 VGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILD-AASKMPMLRLVSLD 713 (784)
Q Consensus 635 s~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~-~l~~l~~L~~L~L~ 713 (784)
+.|... .........++++|+.|+|++|. ++.....+|.+...+++|.|..|.+ +.+.+ ++.++..|+.|+|.
T Consensus 257 ~~d~~d-~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N~l----~~v~~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 257 SEDFPD-SICPAKCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRNKL----EFVSSGMFQGLSGLKTLSLY 330 (498)
T ss_pred cccCcC-CcChHHHHhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcchH----HHHHHHhhhccccceeeeec
Confidence 223222 22333345678999999998866 8877777888888899999999876 55544 47888999999999
Q ss_pred cccccCCCCCccc-ccCCCCCCEEEecCCC
Q 003957 714 LCDASDGNFEIPD-YADRYSLSTVKITKCK 742 (784)
Q Consensus 714 ~c~~~~~~~~l~~-~~~~~~L~~L~is~C~ 742 (784)
+|+..+- .|. |..+.+|.+|.+-.++
T Consensus 331 ~N~it~~---~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 331 DNQITTV---APGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred CCeeEEE---ecccccccceeeeeehccCc
Confidence 8887731 233 8888888888887654
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.2e-09 Score=111.53 Aligned_cols=136 Identities=14% Similarity=0.095 Sum_probs=78.9
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhh--hcccCCcCEEEecCCccchhhHHHHHhcCC
Q 003957 383 TLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALY--NFSGSSLEMLDVSDTMISGAALAYMVHGNS 460 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~--~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~ 460 (784)
..|++++.|+|+++-.-....+..++.++|+|+.|+++.|.+....-. ....++|+.|.|+.|+++......+...+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 445566666666554433344555567777777777777654322111 112578888889989888888888888889
Q ss_pred CccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCC
Q 003957 461 GLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLG 535 (784)
Q Consensus 461 ~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~ 535 (784)
+|+.|.+.....+.-... .-..++.|++|+| ++.+-+.........++.|..|+++.+
T Consensus 223 sl~~L~L~~N~~~~~~~~-----------------~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKAT-----------------STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred cHHHhhhhcccccceecc-----------------hhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 999998877643322111 1111345666666 333333333333444555555555554
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.62 E-value=3.9e-08 Score=114.83 Aligned_cols=164 Identities=16% Similarity=0.106 Sum_probs=80.8
Q ss_pred cccEEEecCCCCCChHHHHHhhc-cCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccE
Q 003957 526 LLHSITVGLGGSLGEDALRLLPT-TCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRK 604 (784)
Q Consensus 526 ~L~~L~L~~~~~l~~~~l~~l~~-~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~ 604 (784)
+|+.|+++++ .+.. ++. .+++|+.|+++.|.++.. +..+ .++|+.|++++|.-...... ..++|+.
T Consensus 263 ~L~~L~Ls~N-~L~~-----LP~~l~~sL~~L~Ls~N~Lt~L--P~~l--p~sL~~L~Ls~N~Lt~LP~~---l~~sL~~ 329 (754)
T PRK15370 263 ALQSLDLFHN-KISC-----LPENLPEELRYLSVYDNSIRTL--PAHL--PSGITHLNVQSNSLTALPET---LPPGLKT 329 (754)
T ss_pred CCCEEECcCC-ccCc-----cccccCCCCcEEECCCCccccC--cccc--hhhHHHHHhcCCccccCCcc---cccccee
Confidence 5677777655 3321 111 134677777776666542 1111 12566777776621111111 1256777
Q ss_pred EEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEE
Q 003957 605 LKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLL 684 (784)
Q Consensus 605 L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~ 684 (784)
|++++| .++. +... -+++|+.|++++|.+.. ....+ .++|+.|+|++|. ++... ..+ ...|+.|+
T Consensus 330 L~Ls~N--~Lt~--LP~~--l~~sL~~L~Ls~N~L~~--LP~~l---p~~L~~LdLs~N~-Lt~LP-~~l--~~sL~~Ld 394 (754)
T PRK15370 330 LEAGEN--ALTS--LPAS--LPPELQVLDVSKNQITV--LPETL---PPTITTLDVSRNA-LTNLP-ENL--PAALQIMQ 394 (754)
T ss_pred ccccCC--cccc--CChh--hcCcccEEECCCCCCCc--CChhh---cCCcCEEECCCCc-CCCCC-HhH--HHHHHHHh
Confidence 777774 3432 1111 12567777777776442 11111 2567777777765 33211 111 12466677
Q ss_pred cccCCC-CCChhHHHHHHhcCCCCceecccccccc
Q 003957 685 LRHNGP-GIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 685 L~~n~~-gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+++|.+ +++ ..++.....++++..|++.+|+..
T Consensus 395 Ls~N~L~~LP-~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 395 ASRNNLVRLP-ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hccCCcccCc-hhHHHHhhcCCCccEEEeeCCCcc
Confidence 777654 011 123333444566677777766654
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.50 E-value=5.3e-09 Score=107.27 Aligned_cols=274 Identities=19% Similarity=0.129 Sum_probs=142.1
Q ss_pred CccEEEecCCCC--CCHHHHHHHHHhCccccEEEecCCcCchhhhhhccc-CCcCEEEecC-CccchhhHHHHHhcCCCc
Q 003957 387 NLQMLHMACCNG--VDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSG-SSLEMLDVSD-TMISGAALAYMVHGNSGL 462 (784)
Q Consensus 387 ~L~~L~L~~c~~--l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~-~~L~~L~Ls~-~~i~~~~l~~~~~~l~~L 462 (784)
.-..++|..+.. +.+. .++.+++|+.|+|++|.|+.++..+|.+ .+|..|-+.+ |+|++.....+ .++..|
T Consensus 68 ~tveirLdqN~I~~iP~~----aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPG----AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF-GGLSSL 142 (498)
T ss_pred cceEEEeccCCcccCChh----hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-hhHHHH
Confidence 567788877654 2222 2378899999999999999999999884 6666665555 78877655444 577777
Q ss_pred cEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChH
Q 003957 463 KYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGED 541 (784)
Q Consensus 463 ~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 541 (784)
+.|.+.-+ ++.-. -+ ..+..++.|..|.+ .+.+..+.. ..+..+.+++++.+..++.+.+-
T Consensus 143 qrLllNan-~i~Ci-------------r~---~al~dL~~l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 143 QRLLLNAN-HINCI-------------RQ---DALRDLPSLSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred HHHhcChh-hhcch-------------hH---HHHHHhhhcchhcccchhhhhhcc-ccccchhccchHhhhcCcccccc
Confidence 77765332 11100 01 23444555666666 222222211 12344556666666555433322
Q ss_pred HHHHhhcc----------CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCC
Q 003957 542 ALRLLPTT----------CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERV 610 (784)
Q Consensus 542 ~l~~l~~~----------~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c 610 (784)
.+..++.. ........+....+.+..-..+......+..=..+.| .....+..-+..+|+|++|++++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn- 283 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN- 283 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-
Confidence 22221110 0001111111112222111222111112211112233 22222333344557777777777
Q ss_pred CCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCC
Q 003957 611 TPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNG 689 (784)
Q Consensus 611 ~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~ 689 (784)
++++...- ..+.....+++|.|..|.+-. +...+..++..|+.|+|++|+ |+-..+..|.....|..|++-.|.
T Consensus 284 -N~i~~i~~-~aFe~~a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 284 -NKITRIED-GAFEGAAELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred -Cccchhhh-hhhcchhhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCe-eEEEecccccccceeeeeehccCc
Confidence 56654322 233345567777777776543 334455667777777777765 665556666666677777766553
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.50 E-value=3.6e-07 Score=106.86 Aligned_cols=246 Identities=12% Similarity=0.043 Sum_probs=134.5
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
.+...|+++++.++. +|.. ..+.|+.|+|++|.. + .++. ...++|+.|++++|
T Consensus 178 ~~~~~L~L~~~~Lts--------------------LP~~--Ip~~L~~L~Ls~N~L-t--sLP~--~l~~nL~~L~Ls~N 230 (754)
T PRK15370 178 NNKTELRLKILGLTT--------------------IPAC--IPEQITTLILDNNEL-K--SLPE--NLQGNIKTLYANSN 230 (754)
T ss_pred cCceEEEeCCCCcCc--------------------CCcc--cccCCcEEEecCCCC-C--cCCh--hhccCCCEEECCCC
Confidence 467788888876664 3321 134788888888754 2 2222 12357888888888
Q ss_pred cCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCC
Q 003957 423 QLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRK 502 (784)
Q Consensus 423 ~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 502 (784)
.++.... .+ ..+|+.|+|++|.+..... .+ ..+|+.|+++++ .++... ..+
T Consensus 231 ~LtsLP~-~l-~~~L~~L~Ls~N~L~~LP~-~l---~s~L~~L~Ls~N-~L~~LP-----------------~~l----- 281 (754)
T PRK15370 231 QLTSIPA-TL-PDTIQEMELSINRITELPE-RL---PSALQSLDLFHN-KISCLP-----------------ENL----- 281 (754)
T ss_pred ccccCCh-hh-hccccEEECcCCccCcCCh-hH---hCCCCEEECcCC-ccCccc-----------------ccc-----
Confidence 7664321 11 3578888888887653221 11 146778877543 333211 000
Q ss_pred ccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhcc-CCCCcEEEeeeeccChHHHHHHHhhCCCCcEE
Q 003957 503 LEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTT-CPMLELVVLYFQVMSDSIIINILESLRRLQVL 581 (784)
Q Consensus 503 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~-~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L 581 (784)
..+|+.|++++| .++. ++.. .++|+.|+++.|.++.. +.. ..++|+.|
T Consensus 282 ---------------------~~sL~~L~Ls~N-~Lt~-----LP~~lp~sL~~L~Ls~N~Lt~L--P~~--l~~sL~~L 330 (754)
T PRK15370 282 ---------------------PEELRYLSVYDN-SIRT-----LPAHLPSGITHLNVQSNSLTAL--PET--LPPGLKTL 330 (754)
T ss_pred ---------------------CCCCcEEECCCC-cccc-----CcccchhhHHHHHhcCCccccC--Ccc--ccccceec
Confidence 124555555554 2211 1111 13466666666655531 111 12467777
Q ss_pred EecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeec
Q 003957 582 AICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLE 661 (784)
Q Consensus 582 ~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~ 661 (784)
++++|.-......+ .++|+.|+++++ .++.. +... .++|+.|++++|.+.. ....+. +.|+.|+++
T Consensus 331 ~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N--~L~~L--P~~l--p~~L~~LdLs~N~Lt~--LP~~l~---~sL~~LdLs 396 (754)
T PRK15370 331 EAGENALTSLPASL---PPELQVLDVSKN--QITVL--PETL--PPTITTLDVSRNALTN--LPENLP---AALQIMQAS 396 (754)
T ss_pred cccCCccccCChhh---cCcccEEECCCC--CCCcC--Chhh--cCCcCEEECCCCcCCC--CCHhHH---HHHHHHhhc
Confidence 77777211111112 267888888884 45421 1111 2578888888887653 111221 258888888
Q ss_pred CCCCCCH--HHHHHh-hCCCCCCEEEcccCCC
Q 003957 662 ECGDITA--YGVTSL-FNCIALEDLLLRHNGP 690 (784)
Q Consensus 662 ~c~~i~~--~~~~~l-~~~~~L~~L~L~~n~~ 690 (784)
+|+ ++. ..+..+ ..++.+..|++.+|.+
T Consensus 397 ~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 397 RNN-LVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cCC-cccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 876 332 122333 3568889999999865
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.46 E-value=2.7e-07 Score=106.81 Aligned_cols=157 Identities=22% Similarity=0.234 Sum_probs=125.9
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCcc
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYC 370 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~ 370 (784)
.+|++|+++|...+.......++..+|+|++|.+.|-.. ....+..+..++|+|.+||+++++++.. ..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~G-------- 190 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-DNDDFSQLCASFPNLRSLDISGTNISNL--SG-------- 190 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-cchhHHHHhhccCccceeecCCCCccCc--HH--------
Confidence 689999999998888888999999999999999998443 3444778888899999999999998872 11
Q ss_pred CcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhh--hhhcc-----cCCcCEEEec
Q 003957 371 NSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKA--LYNFS-----GSSLEMLDVS 443 (784)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~--~~~l~-----~~~L~~L~Ls 443 (784)
++.+++|+.|.+.+-...+...+..+ -++++|+.||+|...-.+.. ..... .|.|+.||.|
T Consensus 191 -----------IS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 191 -----------ISRLKNLQVLSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred -----------HhccccHHHHhccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 27789999999988776555556555 68999999999986433222 22222 5899999999
Q ss_pred CCccchhhHHHHHhcCCCccEEeccCC
Q 003957 444 DTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 444 ~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
++.++...+..+....|+|+.+.+-+|
T Consensus 259 gTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 259 GTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred CcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 999999999999888899998886554
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.29 E-value=2.5e-06 Score=98.97 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=113.7
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
+-.+|++|||++...... .+.......+|+|++|.+++ ..+....+..+..++|+|..||+|..+-..+
T Consensus 120 sr~nL~~LdI~G~~~~s~-~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--------- 188 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSN-GWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNL--------- 188 (699)
T ss_pred HHHhhhhcCccccchhhc-cHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCc---------
Confidence 678999999999665544 66667778999999999999 7787788999999999999999995322212
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLI 339 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~ 339 (784)
....+|.+|+.|.+.+-...+...+..+.. +++|++||++.-....+..+....
T Consensus 189 -------------------------~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qY 242 (699)
T KOG3665|consen 189 -------------------------SGISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQY 242 (699)
T ss_pred -------------------------HHHhccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHH
Confidence 114678999999988755444466777776 899999999985444333222211
Q ss_pred ----HhCCCCCEEEeeCCCCCHHHHHHhhccCC
Q 003957 340 ----RRCVKLQSIIVCDTSFGVYSIRALCSEVP 368 (784)
Q Consensus 340 ----~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~ 368 (784)
..+|+|+.||.+++.+....+..+....+
T Consensus 243 lec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 243 LECGMVLPELRFLDCSGTDINEEILEELLNSHP 275 (699)
T ss_pred HHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence 22699999999999999888887755443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.28 E-value=1.1e-06 Score=83.75 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=47.0
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEec
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLS 420 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls 420 (784)
.+.+|+.|++++|.|.. + +. +..++.|++|+++++...+-. ..+...+|+|+.|+++
T Consensus 40 ~l~~L~~L~Ls~N~I~~--l------------------~~-l~~L~~L~~L~L~~N~I~~i~--~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITK--L------------------EG-LPGLPRLKTLDLSNNRISSIS--EGLDKNLPNLQELYLS 96 (175)
T ss_dssp T-TT--EEE-TTS--S----------------------TT-----TT--EEE--SS---S-C--HHHHHH-TT--EEE-T
T ss_pred hhcCCCEEECCCCCCcc--c------------------cC-ccChhhhhhcccCCCCCCccc--cchHHhCCcCCEEECc
Confidence 34567777777776665 1 11 145778888888877653211 1233467888899988
Q ss_pred CCcCchhh-hhhcc-cCCcCEEEecCCccchhh--HHHHHhcCCCccEEeccC
Q 003957 421 GTQLADKA-LYNFS-GSSLEMLDVSDTMISGAA--LAYMVHGNSGLKYLNARG 469 (784)
Q Consensus 421 ~~~l~~~~-~~~l~-~~~L~~L~Ls~~~i~~~~--l~~~~~~l~~L~~L~L~~ 469 (784)
+|.+.+.. +..+. .++|+.|+|.+|.++... -..++..+|+|+.|+-..
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 88877643 34444 689999999998776433 334668899999998644
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=5.2e-07 Score=89.48 Aligned_cols=207 Identities=16% Similarity=0.103 Sum_probs=130.9
Q ss_pred hHHhhhcCCCccEEEeccc-----cCcccH---hhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccC
Q 003957 493 LFAELGRTRKLEEIVLGWG-----FSFLSL---EVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMS 564 (784)
Q Consensus 493 ~~~~l~~l~~L~~L~L~~~-----~~~~~~---~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~ 564 (784)
+-..+.-+++|..|.+... .+++.. ..-+..+.+|+.+.++.|.. ..+..+...-|.|.++.+.+..+.
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~---~~i~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST---ENIVDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch---hheeceeecCchhheeeeeccccc
Confidence 4445555788999988431 122211 12233466899999998842 222233333477888877655443
Q ss_pred hHHH--H--------------------HHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHH
Q 003957 565 DSII--I--------------------NILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVIL 622 (784)
Q Consensus 565 ~~~l--~--------------------~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l 622 (784)
+... + ..+.....|+++|+++|.....-.++ ...|.++.|+++. +.+...+-
T Consensus 251 ~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~--N~i~~v~n--- 324 (490)
T KOG1259|consen 251 DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESV-KLAPKLRRLILSQ--NRIRTVQN--- 324 (490)
T ss_pred ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhh-hhccceeEEeccc--cceeeehh---
Confidence 3210 0 00111236888999998432222233 3459999999999 66654322
Q ss_pred HhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHH--
Q 003957 623 TQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDA-- 700 (784)
Q Consensus 623 ~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~-- 700 (784)
...+++|++||+|+|....- ......+-+.+.|.|.+|. |. .+..+..+-+|..||+++|++ +.+.+.
T Consensus 325 La~L~~L~~LDLS~N~Ls~~---~Gwh~KLGNIKtL~La~N~-iE--~LSGL~KLYSLvnLDl~~N~I----e~ldeV~~ 394 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLAEC---VGWHLKLGNIKTLKLAQNK-IE--TLSGLRKLYSLVNLDLSSNQI----EELDEVNH 394 (490)
T ss_pred hhhcccceEeecccchhHhh---hhhHhhhcCEeeeehhhhh-Hh--hhhhhHhhhhheeccccccch----hhHHHhcc
Confidence 23467999999999876542 2233347789999999875 32 233445678899999999987 555444
Q ss_pred HhcCCCCceecccccccc
Q 003957 701 ASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 701 l~~l~~L~~L~L~~c~~~ 718 (784)
++++|.|+.+.+.+||..
T Consensus 395 IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cccccHHHHHhhcCCCcc
Confidence 899999999999999877
No 35
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.23 E-value=4.8e-09 Score=95.47 Aligned_cols=154 Identities=17% Similarity=0.044 Sum_probs=89.4
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCc
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELV 630 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~ 630 (784)
..++.|.++.|.++.. +.-+..+.+|+.|++++|.....+.++. .+|+|+.|+++. +.+. .++.-+..+|.|+
T Consensus 33 s~ITrLtLSHNKl~~v--ppnia~l~nlevln~~nnqie~lp~~is-sl~klr~lnvgm--nrl~--~lprgfgs~p~le 105 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV--PPNIAELKNLEVLNLSNNQIEELPTSIS-SLPKLRILNVGM--NRLN--ILPRGFGSFPALE 105 (264)
T ss_pred hhhhhhhcccCceeec--CCcHHHhhhhhhhhcccchhhhcChhhh-hchhhhheecch--hhhh--cCccccCCCchhh
Confidence 4466677777776652 2234557788888888774333333333 347777777775 3332 1223344567788
Q ss_pred EEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCcee
Q 003957 631 ELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLV 710 (784)
Q Consensus 631 ~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L 710 (784)
.||+.+|+..... ...-..++..|+.|.|.++.. . .-+..++.+++|+.|.++.|.+ -.++..++.+.+|++|
T Consensus 106 vldltynnl~e~~-lpgnff~m~tlralyl~dndf-e-~lp~dvg~lt~lqil~lrdndl----l~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 106 VLDLTYNNLNENS-LPGNFFYMTTLRALYLGDNDF-E-ILPPDVGKLTNLQILSLRDNDL----LSLPKEIGDLTRLREL 178 (264)
T ss_pred hhhcccccccccc-CCcchhHHHHHHHHHhcCCCc-c-cCChhhhhhcceeEEeeccCch----hhCcHHHHHHHHHHHH
Confidence 8888776644321 111112244566667766552 1 1123345677777777777755 5566667777777777
Q ss_pred cccccccc
Q 003957 711 SLDLCDAS 718 (784)
Q Consensus 711 ~L~~c~~~ 718 (784)
.+++|...
T Consensus 179 hiqgnrl~ 186 (264)
T KOG0617|consen 179 HIQGNRLT 186 (264)
T ss_pred hcccceee
Confidence 77776655
No 36
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=5.8e-07 Score=89.21 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=36.1
Q ss_pred ccEEEecCCcCchhh-hhhcc--cCCcCEEEecCCccchh-hHHHHHhcCCCccEEeccC
Q 003957 414 LKSLCLSGTQLADKA-LYNFS--GSSLEMLDVSDTMISGA-ALAYMVHGNSGLKYLNARG 469 (784)
Q Consensus 414 L~~L~Ls~~~l~~~~-~~~l~--~~~L~~L~Ls~~~i~~~-~l~~~~~~l~~L~~L~L~~ 469 (784)
+..|.+.++.+..++ ...|. ++.++.+||.+|.+++- .+..+..++|.|+.|+++.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~ 106 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC 106 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC
Confidence 344555555555544 23333 46778888888877663 3566778888888888843
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.22 E-value=6.9e-07 Score=85.17 Aligned_cols=108 Identities=20% Similarity=0.162 Sum_probs=38.8
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEec
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLS 420 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls 420 (784)
++.+++.|+|.++.|.. ++ .+...+.+|+.|++++|.... +..+ ..+++|+.|+++
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie------------------~L~~~l~~L~~L~Ls~N~I~~---l~~l-~~L~~L~~L~L~ 72 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IE------------------NLGATLDKLEVLDLSNNQITK---LEGL-PGLPRLKTLDLS 72 (175)
T ss_dssp ---------------------------------------S--TT-TT--EEE-TTS--S-----TT-----TT--EEE--
T ss_pred ccccccccccccccccc--cc------------------chhhhhcCCCEEECCCCCCcc---ccCc-cChhhhhhcccC
Confidence 45678889999988876 22 222357899999999987633 3333 568999999999
Q ss_pred CCcCchhhhhhc-ccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCc
Q 003957 421 GTQLADKALYNF-SGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKN 472 (784)
Q Consensus 421 ~~~l~~~~~~~l-~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~ 472 (784)
+|.+++.+..-. ..++|++|++++|+|.+..--..+..+|+|+.|++.+++-
T Consensus 73 ~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 73 NNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 999987643211 2689999999999876643323346889999999988743
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.13 E-value=1.9e-05 Score=77.64 Aligned_cols=91 Identities=13% Similarity=0.220 Sum_probs=49.4
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCC--CCCHHH---HHH---HHHhCc
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCN--GVDGMY---LLE---LMCQAR 412 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~--~l~~~~---l~~---l~~~~~ 412 (784)
....+..++|++|.|+..+..++|.-+ ..-.+|+..+++.-. ...+.. +.. ....||
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~i---------------a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp 92 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVI---------------ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCP 92 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHH---------------hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCC
Confidence 367788888888888888888877544 444566666665421 111111 111 124566
Q ss_pred cccEEEecCCcCchhhhhhcc-----cCCcCEEEecCCc
Q 003957 413 KLKSLCLSGTQLADKALYNFS-----GSSLEMLDVSDTM 446 (784)
Q Consensus 413 ~L~~L~Ls~~~l~~~~~~~l~-----~~~L~~L~Ls~~~ 446 (784)
+|+..+||.|.+....+..+. .+.|++|.+++|.
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 666666666654433322211 2445555555553
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=6.5e-06 Score=81.94 Aligned_cols=194 Identities=22% Similarity=0.132 Sum_probs=121.6
Q ss_pred HHHhhccCCCCcEEEeeeeccChH-HHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHH
Q 003957 543 LRLLPTTCPMLELVVLYFQVMSDS-IIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVI 621 (784)
Q Consensus 543 l~~l~~~~~~L~~L~L~~~~i~~~-~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~ 621 (784)
+..++..++.++++++..|.|++. .+..+++++|.|+.|+++.|.-...+........+|++|.+.| ..+.-.....
T Consensus 63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg--T~L~w~~~~s 140 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG--TGLSWTQSTS 140 (418)
T ss_pred HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC--CCCChhhhhh
Confidence 445566677788888877777763 4666777788888888877732222222222335788888877 5666666666
Q ss_pred HHhcCCCCcEEEecCCCC----CChH-----------------------HHHHHHhcCCCCcEEeecCCCCCCHHHHHHh
Q 003957 622 LTQNCSELVELSLVGCTL----LSSD-----------------------SQLIISQGWPGLISLHLEECGDITAYGVTSL 674 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~----~~~~-----------------------~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l 674 (784)
....+|.+++|.+|.|+. +++. ....+..-+|++..+.+..|+.-+...-...
T Consensus 141 ~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s 220 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS 220 (418)
T ss_pred hhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccC
Confidence 666777777777776621 1110 0111334478888888888874343333344
Q ss_pred hCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCC-ccc---ccCCCCCCEEEecC
Q 003957 675 FNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFE-IPD---YADRYSLSTVKITK 740 (784)
Q Consensus 675 ~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~-l~~---~~~~~~L~~L~is~ 740 (784)
..+|.+-.|+|+.+++ +.=...+.+.++++|..|.+..+|.....-. .+. ++.++.++.|+=++
T Consensus 221 e~~p~~~~LnL~~~~i--dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGsk 288 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNI--DSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSK 288 (418)
T ss_pred CCCCcchhhhhccccc--ccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcc
Confidence 4677888888888876 5455667788899999999998887742211 111 45566666665443
No 40
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.99 E-value=4.7e-08 Score=89.08 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=102.4
Q ss_pred CCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 575 LRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 575 l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
+.+++.|.+++|.-......++.. .+|+.|++.+ +.+.+ ++.-+++++.|+.|++.-|+... ..--...+|.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l-~nlevln~~n--nqie~--lp~~issl~klr~lnvgmnrl~~---lprgfgs~p~ 103 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAEL-KNLEVLNLSN--NQIEE--LPTSISSLPKLRILNVGMNRLNI---LPRGFGSFPA 103 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHh-hhhhhhhccc--chhhh--cChhhhhchhhhheecchhhhhc---CccccCCCch
Confidence 345667777777433333334332 6788888887 56643 33334457788888887665433 2222345788
Q ss_pred CcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCC
Q 003957 655 LISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSL 733 (784)
Q Consensus 655 L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L 733 (784)
|+.|+|..++.-...-+..|..++.|+-|.+++|.+ +.++...+.+++|+.|.++.|+.+ ++|. ++.+..|
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndf----e~lp~dvg~lt~lqil~lrdndll----~lpkeig~lt~l 175 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF----EILPPDVGKLTNLQILSLRDNDLL----SLPKEIGDLTRL 175 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCc----ccCChhhhhhcceeEEeeccCchh----hCcHHHHHHHHH
Confidence 888888887633322233444667778888888866 778888888888888888888877 6787 8888888
Q ss_pred CEEEecCCCC
Q 003957 734 STVKITKCKS 743 (784)
Q Consensus 734 ~~L~is~C~~ 743 (784)
++|+|+++.-
T Consensus 176 relhiqgnrl 185 (264)
T KOG0617|consen 176 RELHIQGNRL 185 (264)
T ss_pred HHHhccccee
Confidence 8888888764
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.95 E-value=9.5e-05 Score=72.95 Aligned_cols=114 Identities=19% Similarity=0.167 Sum_probs=69.9
Q ss_pred CCccEEEccCCCCCCChHHHHHHH----hcCCCCcEEEecCCCCCChH--HHHHHHhcCCCCcEEeecCCCCCCHHHHHH
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILT----QNCSELVELSLVGCTLLSSD--SQLIISQGWPGLISLHLEECGDITAYGVTS 673 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~----~~~~~L~~L~Ls~c~~~~~~--~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~ 673 (784)
.+|+.+++.. +.|..+++..+. .-|++|+.||+..|-..-.+ .+......|+.|+.|.+.+|- ++..|...
T Consensus 185 ~~lk~vki~q--NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~ 261 (388)
T COG5238 185 ENLKEVKIQQ--NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKS 261 (388)
T ss_pred cCceeEEeee--cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHH
Confidence 5777777777 567766655332 24678888888887654333 233344568888889888886 44444443
Q ss_pred h------hCCCCCCEEEcccCCCCCChhHH-----HHH-HhcCCCCceecccccccc
Q 003957 674 L------FNCIALEDLLLRHNGPGIPRDFI-----LDA-ASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 674 l------~~~~~L~~L~L~~n~~gl~~~~~-----~~~-l~~l~~L~~L~L~~c~~~ 718 (784)
+ ...|+|+.|-..+|.+ ..+.+ +.. =..+|-|..|.+.+|...
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~--~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNER--RGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHHHhhhhcCCCccccccchhhh--cCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 3 1478888888888753 11111 111 134566777777766655
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.84 E-value=4e-06 Score=83.31 Aligned_cols=103 Identities=21% Similarity=0.150 Sum_probs=56.0
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 626 CSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 626 ~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
.+.|+++|+|+|.+.. ...-.+-.|+++.|++++|. |+. +..++.+++|+.||+++|.+ ..+..+-..+.
T Consensus 283 Wq~LtelDLS~N~I~~---iDESvKL~Pkir~L~lS~N~-i~~--v~nLa~L~~L~~LDLS~N~L----s~~~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ---IDESVKLAPKLRRLILSQNR-IRT--VQNLAELPQLQLLDLSGNLL----AECVGWHLKLG 352 (490)
T ss_pred Hhhhhhccccccchhh---hhhhhhhccceeEEeccccc-eee--ehhhhhcccceEeecccchh----HhhhhhHhhhc
Confidence 3467777777776543 11111225777777777766 332 22345677777777777754 44444444455
Q ss_pred CCceeccccccccCCCCCcccccCCCCCCEEEecCCC
Q 003957 706 MLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCK 742 (784)
Q Consensus 706 ~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~ 742 (784)
+.++|.+.+|..- +++.+..+.+|..||++.+.
T Consensus 353 NIKtL~La~N~iE----~LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 353 NIKTLKLAQNKIE----TLSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred CEeeeehhhhhHh----hhhhhHhhhhheeccccccc
Confidence 5555555554322 22334444555555555554
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.72 E-value=1.9e-05 Score=94.04 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=52.1
Q ss_pred CCCccEEecCCCCC-CChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCC
Q 003957 290 PSKITKLTLEGRSD-MCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVP 368 (784)
Q Consensus 290 l~~L~~L~Ls~~~~-l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~ 368 (784)
.++|++|-+.++.. +... ...+...+|.|++|++++|..++. ++..++.+-+|+.|+++++.+..
T Consensus 544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~t~I~~----------- 609 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSDTGISH----------- 609 (889)
T ss_pred CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccCCCccc-----------
Confidence 34566666665532 1111 112223466666666666544332 33444555566666666665553
Q ss_pred ccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecC
Q 003957 369 YCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSG 421 (784)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~ 421 (784)
+|.-+.++..|.+|++..+.... ..+.....+++|++|.+..
T Consensus 610 ---------LP~~l~~Lk~L~~Lnl~~~~~l~--~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 610 ---------LPSGLGNLKKLIYLNLEVTGRLE--SIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ---------cchHHHHHHhhheeccccccccc--cccchhhhcccccEEEeec
Confidence 34444555566666665544321 1122333455555555544
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.54 E-value=1.3e-05 Score=88.65 Aligned_cols=152 Identities=17% Similarity=0.119 Sum_probs=98.2
Q ss_pred cCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhC----------CCCCEEEeeCCC
Q 003957 285 HSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRC----------VKLQSIIVCDTS 354 (784)
Q Consensus 285 ~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~----------~~L~~L~Ls~~~ 354 (784)
.++..+..|+.|.|.+|..-+..++..+-. .|++|.- .+ +-..+.+++..| .+|.+.+.+.|.
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC---~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLIC---HN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred ceeccccceeeEEecCcchhhhhhhHHHHH---hhhhhhh---hc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence 345677899999999997766666666655 4666643 22 234566666665 245555666654
Q ss_pred CCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhccc
Q 003957 355 FGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSG 434 (784)
Q Consensus 355 i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~ 434 (784)
+.. +-.....++.|+.|+|++|+.. ....+ ..+++|++|+|+.|.+....-....+
T Consensus 176 L~~--------------------mD~SLqll~ale~LnLshNk~~---~v~~L-r~l~~LkhLDlsyN~L~~vp~l~~~g 231 (1096)
T KOG1859|consen 176 LVL--------------------MDESLQLLPALESLNLSHNKFT---KVDNL-RRLPKLKHLDLSYNCLRHVPQLSMVG 231 (1096)
T ss_pred HHh--------------------HHHHHHHHHHhhhhccchhhhh---hhHHH-Hhcccccccccccchhccccccchhh
Confidence 432 1122255778899999988763 33333 78899999999998777655444345
Q ss_pred CCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 435 SSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 435 ~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
..|+.|.|+||.++. +.-+ .++.+|+.|++++.
T Consensus 232 c~L~~L~lrnN~l~t--L~gi-e~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 232 CKLQLLNLRNNALTT--LRGI-ENLKSLYGLDLSYN 264 (1096)
T ss_pred hhheeeeecccHHHh--hhhH-HhhhhhhccchhHh
Confidence 568899998886542 2222 35577888887654
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.47 E-value=3.3e-05 Score=60.12 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=36.8
Q ss_pred CCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCC
Q 003957 678 IALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCK 742 (784)
Q Consensus 678 ~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~ 742 (784)
|+|++|++++|.+ . ....+.+.++++|++|++++|... .+++ |..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l--~-~i~~~~f~~l~~L~~L~l~~N~l~----~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL--T-EIPPDSFSNLPNLETLDLSNNNLT----SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE--S-EECTTTTTTGTTESEEEETSSSES----EEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC--C-ccCHHHHcCCCCCCEeEccCCccC----ccCHHHHcCCCCCCEEeCcCCc
Confidence 4566777777654 3 333345666777777777765554 3343 7777777777777775
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.27 E-value=2.5e-05 Score=86.56 Aligned_cols=176 Identities=18% Similarity=0.097 Sum_probs=105.2
Q ss_pred hcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhC----------CCCcEEEecccCChhHH
Q 003957 523 AIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESL----------RRLQVLAICHCLGDLSI 592 (784)
Q Consensus 523 ~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l----------~~L~~L~Ls~c~~~~~~ 592 (784)
.+.+|+.|.+.+|+--...++..+.. +|++|.-.. .. +.+..++..| ..|...+.++|.- ..+
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~-Sl--~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L-~~m 179 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHN-SL--DALRHVFASCGGDISNSPVWNKLATASFSYNRL-VLM 179 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhc-cH--HHHHHHHHHhccccccchhhhhHhhhhcchhhH-HhH
Confidence 35678888888885433444444433 344443211 11 1122222222 1455666666621 111
Q ss_pred HHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHH
Q 003957 593 SSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVT 672 (784)
Q Consensus 593 ~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~ 672 (784)
..-...+|.|+.|+|++ |++++.+ ....|+.|++|||++|..-.- ...-..+|. |+.|.|.+|..-+-.|
T Consensus 180 D~SLqll~ale~LnLsh--Nk~~~v~---~Lr~l~~LkhLDlsyN~L~~v--p~l~~~gc~-L~~L~lrnN~l~tL~g-- 249 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSH--NKFTKVD---NLRRLPKLKHLDLSYNCLRHV--PQLSMVGCK-LQLLNLRNNALTTLRG-- 249 (1096)
T ss_pred HHHHHHHHHhhhhccch--hhhhhhH---HHHhcccccccccccchhccc--cccchhhhh-heeeeecccHHHhhhh--
Confidence 11223448899999999 7787654 345688999999999876441 111223466 9999999887433333
Q ss_pred HhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 673 SLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 673 ~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+.++.+|+-||+++|-+ .+-.-..-+..+..|+.|+|.|||.-
T Consensus 250 -ie~LksL~~LDlsyNll--~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 -IENLKSLYGLDLSYNLL--SEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -HHhhhhhhccchhHhhh--hcchhhhHHHHHHHHHHHhhcCCccc
Confidence 34678899999999854 22222233666788999999999875
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.21 E-value=0.0002 Score=55.71 Aligned_cols=58 Identities=28% Similarity=0.344 Sum_probs=37.3
Q ss_pred ccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 412 RKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 412 ~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
|+|+.|++++|.++......|. .++|++|++++|.++...... +.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA-FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT-TTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH-HcCCCCCCEEeCcCC
Confidence 4567777777766666555555 577777777777665443332 357777777777665
No 48
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.06 E-value=0.00014 Score=63.42 Aligned_cols=67 Identities=27% Similarity=0.402 Sum_probs=52.9
Q ss_pred cccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhheeeeeeheec
Q 003957 4 MSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRISILPLWFA 75 (784)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (784)
..+..|.++|++.+...+.++++.|.+|+++-+|++.|+..+.+.-+ +.-..+++.||+..+|..+.
T Consensus 32 ~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~-----~~~~~Ll~~iR~~~l~~~~L 98 (103)
T PF07707_consen 32 SKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENRE-----EHLKELLSCIRFPLLSPEEL 98 (103)
T ss_dssp TTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHT-----TTHHHHHCCCHHHCT-HHHH
T ss_pred ccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHH-----HHHHHHHHhCCcccCCHHHH
Confidence 45678999999999999999999999999999999999999876422 22567889999998886543
No 49
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.00037 Score=66.23 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=65.7
Q ss_pred CccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCC
Q 003957 601 NLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIAL 680 (784)
Q Consensus 601 ~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L 680 (784)
.++.++-+++ .|..+|+..+ .+++.++.|.+.+|....|..+..+....++|+.|+|++|..||+.|+..+..+++|
T Consensus 102 ~IeaVDAsds--~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDS--SIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCc--hHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 3455555553 4666777654 367888888888888888888888877788899999999998998888888888888
Q ss_pred CEEEccc
Q 003957 681 EDLLLRH 687 (784)
Q Consensus 681 ~~L~L~~ 687 (784)
+.|.|.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 8887765
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.96 E-value=0.0011 Score=79.23 Aligned_cols=182 Identities=22% Similarity=0.155 Sum_probs=115.2
Q ss_pred cCCCCcEEEeeeecc-ChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCC
Q 003957 549 TCPMLELVVLYFQVM-SDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCS 627 (784)
Q Consensus 549 ~~~~L~~L~L~~~~i-~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~ 627 (784)
.||.|++|-+..+.- -......++..++.|+.||+++|.....++.....+-+|++|++++ ..+. .++.-+.+++
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~--t~I~--~LP~~l~~Lk 618 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD--TGIS--HLPSGLGNLK 618 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC--CCcc--ccchHHHHHH
Confidence 467888888865531 1222345688899999999999854444444444557999999999 4565 3444455677
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCC-CCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECG-DITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~-~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~ 706 (784)
.|.+|++..+...... ..+...+++|++|.+..-. ..+...+..+.++.+|+.+...... ..+.+-+...++
T Consensus 619 ~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s-----~~~~e~l~~~~~ 691 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS-----VLLLEDLLGMTR 691 (889)
T ss_pred hhheeccccccccccc--cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch-----hHhHhhhhhhHH
Confidence 8999999987765422 4455568899999997754 2333334444567777777775542 222233344444
Q ss_pred Ccee----ccccccccCCCCCccc-ccCCCCCCEEEecCCCCcC
Q 003957 707 LRLV----SLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 707 L~~L----~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~ 745 (784)
|.++ .+.+|... ..+. ...+.+|+.|.|.+|+...
T Consensus 692 L~~~~~~l~~~~~~~~----~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCSKR----TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred HHHHhHhhhhcccccc----eeecccccccCcceEEEEcCCCch
Confidence 4433 33332322 2333 7778889999999888643
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.94 E-value=0.00062 Score=75.34 Aligned_cols=174 Identities=20% Similarity=0.105 Sum_probs=94.6
Q ss_pred CcccEEEecCCCCCChHHHHHhhccC-CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCcc
Q 003957 525 KLLHSITVGLGGSLGEDALRLLPTTC-PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLR 603 (784)
Q Consensus 525 ~~L~~L~L~~~~~l~~~~l~~l~~~~-~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~ 603 (784)
+.+..|++..+.- .+ +....... ++|+.|+++.+.+.+. +.....+++|+.|++++|.......... ..++|+
T Consensus 116 ~~l~~L~l~~n~i-~~--i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDNNNI-TD--IPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLLS-NLSNLN 189 (394)
T ss_pred cceeEEecCCccc-cc--Cccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhhh-hhhhhh
Confidence 4567777766521 11 11111212 2677888877777653 2335667788888887773222222111 346777
Q ss_pred EEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEE
Q 003957 604 KLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDL 683 (784)
Q Consensus 604 ~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L 683 (784)
.|.+++ +.+.+.... ......|++|.+++|..... ......+.++..+.+.++. +... +..+..++.++.|
T Consensus 190 ~L~ls~--N~i~~l~~~--~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~-~~~~-~~~~~~l~~l~~L 260 (394)
T COG4886 190 NLDLSG--NKISDLPPE--IELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNK-LEDL-PESIGNLSNLETL 260 (394)
T ss_pred heeccC--CccccCchh--hhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCce-eeec-cchhcccccccee
Confidence 788877 555543221 12233577777777753331 1122335556666655544 2211 2233466677777
Q ss_pred EcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 684 LLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 684 ~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
++++|.+ ..+.. ++.+.+|+.|+++++...
T Consensus 261 ~~s~n~i----~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 261 DLSNNQI----SSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccccc----ccccc-ccccCccCEEeccCcccc
Confidence 7777755 33333 666777777777776655
No 52
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.90 E-value=0.00031 Score=78.33 Aligned_cols=217 Identities=18% Similarity=0.162 Sum_probs=109.2
Q ss_pred ccEEEecCCCCCCHHHHHH---HHHhCccccEEEecCCcCchhhhhhcc-----c-CCcCEEEecCCccchhhHHHHHh-
Q 003957 388 LQMLHMACCNGVDGMYLLE---LMCQARKLKSLCLSGTQLADKALYNFS-----G-SSLEMLDVSDTMISGAALAYMVH- 457 (784)
Q Consensus 388 L~~L~L~~c~~l~~~~l~~---l~~~~~~L~~L~Ls~~~l~~~~~~~l~-----~-~~L~~L~Ls~~~i~~~~l~~~~~- 457 (784)
+.+|.|.+|..- +..... .....+.|+.|++++|.+.+.+...+. . ..+++|++..|.++..+...+..
T Consensus 89 l~~L~L~~~~l~-~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLG-DRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccc-cchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 677777776542 222222 234566777777777777766554443 1 35666666666655554433322
Q ss_pred --cCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCC
Q 003957 458 --GNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLG 535 (784)
Q Consensus 458 --~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 535 (784)
.+..++.++++.|..+ ..+.. .....+.. .+....++++|++..|
T Consensus 168 L~~~~~l~~l~l~~n~l~-~~g~~------------~l~~~l~~--------------------~~~~~~~le~L~L~~~ 214 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLI-ELGLL------------VLSQALES--------------------AASPLSSLETLKLSRC 214 (478)
T ss_pred HhcccchhHHHHHhcccc-hhhhH------------HHhhhhhh--------------------hhcccccHHHHhhhhc
Confidence 2445555555544332 11110 00011110 0112334666666666
Q ss_pred CCCChHHHHHhh---ccCCC-CcEEEeeeeccChHHHHHHHhhCC----CCcEEEeccc-CChh---HHHHhhcCCCCcc
Q 003957 536 GSLGEDALRLLP---TTCPM-LELVVLYFQVMSDSIIINILESLR----RLQVLAICHC-LGDL---SISSFKLPLPNLR 603 (784)
Q Consensus 536 ~~l~~~~l~~l~---~~~~~-L~~L~L~~~~i~~~~l~~~~~~l~----~L~~L~Ls~c-~~~~---~~~~l~~~~~~L~ 603 (784)
. ++......+. ...+. +.++++.+|.+.|.++....+.+. .++++++++| +++. .+......+++++
T Consensus 215 ~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~ 293 (478)
T KOG4308|consen 215 G-VTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLE 293 (478)
T ss_pred C-cChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHH
Confidence 2 2232222222 12333 555777778888777666555444 4477777777 3322 2333344556777
Q ss_pred EEEccCCCCCCChHHHHHHHh---cCCCCcEEEecCCCCCC
Q 003957 604 KLKLERVTPWMTNNDLVILTQ---NCSELVELSLVGCTLLS 641 (784)
Q Consensus 604 ~L~L~~c~~~l~~~~l~~l~~---~~~~L~~L~Ls~c~~~~ 641 (784)
.+.+.. +.+++.+.....+ ....+.++-+.++....
T Consensus 294 ~l~l~~--n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 332 (478)
T KOG4308|consen 294 ELSLSN--NPLTDYGVELLLEALERKTPLLHLVLGGTGKGT 332 (478)
T ss_pred Hhhccc--CccccHHHHHHHHHhhhcccchhhhccccCccc
Confidence 777777 5666655543332 22345555555544443
No 53
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.90 E-value=0.00032 Score=60.76 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=56.6
Q ss_pred cccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhheeeeeeheecc
Q 003957 4 MSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRISILPLWFAA 76 (784)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (784)
.++..|.++|++.+...+++++|+|.+|+.+-+|++.|+..++.. . ..-..+++.||+.++|..+.+
T Consensus 32 ~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~--~----~~~~~ll~~ir~~~~~~~~l~ 98 (101)
T smart00875 32 AQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPER--R----RHLPELLSHVRFPLLSPEYLL 98 (101)
T ss_pred hcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHH--H----HHHHHHHHhCCCCCCCHHHHH
Confidence 455789999999999999999999999999999999999998721 1 134578999999999877654
No 54
>PLN03150 hypothetical protein; Provisional
Probab=96.79 E-value=0.002 Score=75.29 Aligned_cols=61 Identities=25% Similarity=0.170 Sum_probs=28.3
Q ss_pred CCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccc
Q 003957 652 WPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~ 716 (784)
+++|+.|+|++|. ++...+..+..+++|+.|+|++|.+ . ..+++.++.+++|+.|+|++|.
T Consensus 441 L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N~l--s-g~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 441 LRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNSF--N-GSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCCCC--C-CCCchHHhcCCCCCEEECcCCc
Confidence 4455555555443 3322233344455555555555533 2 3344445555555555555544
No 55
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.74 E-value=0.00051 Score=76.61 Aligned_cols=88 Identities=19% Similarity=0.096 Sum_probs=42.2
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHHhC----ccccEEEecCCcCchhhhhhcc-----cCCcCEEEecCCccchhhHH
Q 003957 383 TLASNLQMLHMACCNGVDGMYLLELMCQA----RKLKSLCLSGTQLADKALYNFS-----GSSLEMLDVSDTMISGAALA 453 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~l~~~~l~~l~~~~----~~L~~L~Ls~~~l~~~~~~~l~-----~~~L~~L~Ls~~~i~~~~l~ 453 (784)
...+.|+.|+++++..- +.+...+.... ..++.|++..|.+++.+...+. ...++.++++.|.+...+..
T Consensus 112 ~t~~~L~~L~l~~n~l~-~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGNNLG-DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred cccccHhHhhcccCCCc-cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 33445555666555442 33333332211 3344555555655554433322 35666666666654333322
Q ss_pred HHH---h----cCCCccEEeccCCC
Q 003957 454 YMV---H----GNSGLKYLNARGCK 471 (784)
Q Consensus 454 ~~~---~----~l~~L~~L~L~~c~ 471 (784)
.+. . ...++++|++.+|.
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~ 215 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCG 215 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcC
Confidence 221 1 24456777776663
No 56
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.58 E-value=0.0027 Score=70.18 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=97.4
Q ss_pred CccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccC
Q 003957 292 KITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCN 371 (784)
Q Consensus 292 ~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~ 371 (784)
+|+.|+++++.. .. +..-...+++|+.|++++|. +++ ++......+.|+.|++++|.+..
T Consensus 141 nL~~L~l~~N~i-~~--l~~~~~~l~~L~~L~l~~N~-l~~--l~~~~~~~~~L~~L~ls~N~i~~-------------- 200 (394)
T COG4886 141 NLKELDLSDNKI-ES--LPSPLRNLPNLKNLDLSFND-LSD--LPKLLSNLSNLNNLDLSGNKISD-------------- 200 (394)
T ss_pred hcccccccccch-hh--hhhhhhccccccccccCCch-hhh--hhhhhhhhhhhhheeccCCcccc--------------
Confidence 899999998843 22 21223468999999999853 333 23333377899999999998877
Q ss_pred cccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchh
Q 003957 372 SSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGA 450 (784)
Q Consensus 372 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~ 450 (784)
+|........|++|.++++..+.. +. ....+.++..+.+.++.+.+. ...+. .++++.|++++|.++..
T Consensus 201 ------l~~~~~~~~~L~~l~~~~N~~~~~--~~-~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 201 ------LPPEIELLSALEELDLSNNSIIEL--LS-SLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ------CchhhhhhhhhhhhhhcCCcceec--ch-hhhhcccccccccCCceeeec-cchhccccccceecccccccccc
Confidence 333334556689999988853221 11 236677777777777765542 11111 35699999999987765
Q ss_pred hHHHHHhcCCCccEEeccCCC
Q 003957 451 ALAYMVHGNSGLKYLNARGCK 471 (784)
Q Consensus 451 ~l~~~~~~l~~L~~L~L~~c~ 471 (784)
.. +....++++|++++..
T Consensus 271 ~~---~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 271 SS---LGSLTNLRELDLSGNS 288 (394)
T ss_pred cc---ccccCccCEEeccCcc
Confidence 44 3567889999887653
No 57
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.0031 Score=60.07 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=31.0
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEEC 663 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c 663 (784)
+.++.|.+..| ..+.|.++..+....++|+.|++++|+.+++..+..+. .+++|+.|.|++-
T Consensus 125 ~~i~~l~l~~c-k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l 186 (221)
T KOG3864|consen 125 RSIKSLSLANC-KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDL 186 (221)
T ss_pred chhhhheeccc-cchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCc
Confidence 44444444444 34455555544444455555555555555555544442 3555555555543
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.0004 Score=68.87 Aligned_cols=80 Identities=28% Similarity=0.352 Sum_probs=42.0
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHH--HHhcCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILD--AASKMP 705 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~--~l~~l~ 705 (784)
+.+.|+..||.+.+ . .+...++.|+.|.|+-|. |+ .+..+..|++|++|.|+.|.| ..+-+ .+.++|
T Consensus 20 ~vkKLNcwg~~L~D-I---sic~kMp~lEVLsLSvNk-Is--sL~pl~rCtrLkElYLRkN~I----~sldEL~YLknlp 88 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-I---SICEKMPLLEVLSLSVNK-IS--SLAPLQRCTRLKELYLRKNCI----ESLDELEYLKNLP 88 (388)
T ss_pred HhhhhcccCCCccH-H---HHHHhcccceeEEeeccc-cc--cchhHHHHHHHHHHHHHhccc----ccHHHHHHHhcCc
Confidence 44555555555433 1 122345556666666544 33 133344566666666666654 33322 256666
Q ss_pred CCceecccccccc
Q 003957 706 MLRLVSLDLCDAS 718 (784)
Q Consensus 706 ~L~~L~L~~c~~~ 718 (784)
+|+.|+|..|+-.
T Consensus 89 sLr~LWL~ENPCc 101 (388)
T KOG2123|consen 89 SLRTLWLDENPCC 101 (388)
T ss_pred hhhhHhhccCCcc
Confidence 6666666666655
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.42 E-value=0.0026 Score=45.49 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=13.7
Q ss_pred CCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccc
Q 003957 679 ALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 679 ~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~ 716 (784)
+|++|++++|++ ..++..++++++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i----~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQI----TDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-----SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCC----cccCchHhCCCCCCEEEecCCC
Confidence 344444444433 2333334444444444444443
No 60
>PLN03150 hypothetical protein; Provisional
Probab=96.31 E-value=0.0063 Score=71.10 Aligned_cols=105 Identities=13% Similarity=0.015 Sum_probs=70.1
Q ss_pred CCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcC
Q 003957 345 LQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQL 424 (784)
Q Consensus 345 L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l 424 (784)
++.|+|+++.+.. .+|..+..+++|+.|+|++|... ..++.....+++|+.|+|++|.+
T Consensus 420 v~~L~L~~n~L~g-------------------~ip~~i~~L~~L~~L~Ls~N~l~--g~iP~~~~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 420 IDGLGLDNQGLRG-------------------FIPNDISKLRHLQSINLSGNSIR--GNIPPSLGSITSLEVLDLSYNSF 478 (623)
T ss_pred EEEEECCCCCccc-------------------cCCHHHhCCCCCCEEECCCCccc--CcCChHHhCCCCCCEEECCCCCC
Confidence 5667777776643 14455577888899999887642 12333347888889999988888
Q ss_pred chhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 425 ADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 425 ~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
+...+..+. .++|+.|+|++|.++......+.....++..+++.++
T Consensus 479 sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 766655555 5788899998887766554444333345666766654
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.18 E-value=0.0011 Score=58.94 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=61.5
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHh-hCCCCCCEEEcccCCCCCChhHHHHHHhcCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSL-FNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l-~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~ 706 (784)
-+..++|+.|.+.--.-......+...|+..+|++|. +.+. +..+ ..++.++.|++++|.+ ..+++.+..++.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~f-p~kft~kf~t~t~lNl~~nei----sdvPeE~Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKF-PKKFTIKFPTATTLNLANNEI----SDVPEELAAMPA 101 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhC-CHHHhhccchhhhhhcchhhh----hhchHHHhhhHH
Confidence 3556677777654211122222344556666777655 3322 2233 2566777777777766 555555777777
Q ss_pred CceeccccccccCCCCCccc-ccCCCCCCEEEecCCCC
Q 003957 707 LRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 707 L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
|+.|+++.|+.. ..|. +..+.+|..||..++..
T Consensus 102 Lr~lNl~~N~l~----~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 102 LRSLNLRFNPLN----AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hhhcccccCccc----cchHHHHHHHhHHHhcCCCCcc
Confidence 777777777766 4455 44466666666666553
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.95 E-value=0.012 Score=63.55 Aligned_cols=137 Identities=16% Similarity=0.131 Sum_probs=69.0
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCC-CCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLR-RLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~-~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
|++++.|+++.+.++.. + .+| +|++|.+++|..-..+... ..++|++|++++| ..+. . + .++
T Consensus 51 ~~~l~~L~Is~c~L~sL--P----~LP~sLtsL~Lsnc~nLtsLP~~--LP~nLe~L~Ls~C-s~L~--s---L---P~s 113 (426)
T PRK15386 51 ARASGRLYIKDCDIESL--P----VLPNELTEITIENCNNLTTLPGS--IPEGLEKLTVCHC-PEIS--G---L---PES 113 (426)
T ss_pred hcCCCEEEeCCCCCccc--C----CCCCCCcEEEccCCCCcccCCch--hhhhhhheEccCc-cccc--c---c---ccc
Confidence 57788888864454432 1 233 6777887776332221111 1247777777777 3342 1 1 236
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
|+.|+++++.... +..--++|+.|.+.+++.....+... .-.++|+.|++++|.. ...++.+. .+|+
T Consensus 114 Le~L~L~~n~~~~------L~~LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~----i~LP~~LP--~SLk 180 (426)
T PRK15386 114 VRSLEIKGSATDS------IKNVPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSN----IILPEKLP--ESLQ 180 (426)
T ss_pred cceEEeCCCCCcc------cccCcchHhheecccccccccccccc-ccCCcccEEEecCCCc----ccCccccc--ccCc
Confidence 7777776543221 11112456667665433111111110 0135788888888753 22222222 4788
Q ss_pred eecccccc
Q 003957 709 LVSLDLCD 716 (784)
Q Consensus 709 ~L~L~~c~ 716 (784)
.|.++.+.
T Consensus 181 ~L~ls~n~ 188 (426)
T PRK15386 181 SITLHIEQ 188 (426)
T ss_pred EEEecccc
Confidence 88877643
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.67 E-value=0.0094 Score=56.86 Aligned_cols=107 Identities=20% Similarity=0.082 Sum_probs=67.7
Q ss_pred CCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHH--HhcC
Q 003957 627 SELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDA--ASKM 704 (784)
Q Consensus 627 ~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~--l~~l 704 (784)
.+...+||++|.+.... ...++++|.+|.+..|. |+...+.--.-+++|+.|.+.+|++ ..+.+. +..|
T Consensus 42 d~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi----~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSI----QELGDLDPLASC 112 (233)
T ss_pred cccceecccccchhhcc----cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcch----hhhhhcchhccC
Confidence 35677777777654421 22456777888776654 6654443323577788888888866 455444 6778
Q ss_pred CCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCC
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCK 742 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~ 742 (784)
|+|++|.+-+|+........-. +-.+++|+.||.++-.
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8888888888776632101111 4567888888888765
No 64
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.51 E-value=0.00052 Score=74.63 Aligned_cols=170 Identities=15% Similarity=0.096 Sum_probs=108.0
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCc
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELV 630 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~ 630 (784)
-.|+.+.++.|.+.- ++..+.++..|..|+++.|.....+..+. . --|+.|.+++ ++++..... ....+.|.
T Consensus 98 ~~Le~liLy~n~~r~--ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-~-lpLkvli~sN--Nkl~~lp~~--ig~~~tl~ 169 (722)
T KOG0532|consen 98 VSLESLILYHNCIRT--IPEAICNLEALTFLDLSSNQLSHLPDGLC-D-LPLKVLIVSN--NKLTSLPEE--IGLLPTLA 169 (722)
T ss_pred HHHHHHHHHhcccee--cchhhhhhhHHHHhhhccchhhcCChhhh-c-CcceeEEEec--CccccCCcc--cccchhHH
Confidence 346666664443332 23335566778888888773222222221 1 2578888888 666532221 12456889
Q ss_pred EEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCcee
Q 003957 631 ELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLV 710 (784)
Q Consensus 631 ~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L 710 (784)
+||++.|.+.+- ...+ .++.+|+.|.+..++... .+..+. .-.|..||+++|++ ..++-.+.++..|++|
T Consensus 170 ~ld~s~nei~sl--psql-~~l~slr~l~vrRn~l~~--lp~El~-~LpLi~lDfScNki----s~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 170 HLDVSKNEIQSL--PSQL-GYLTSLRDLNVRRNHLED--LPEELC-SLPLIRLDFSCNKI----SYLPVDFRKMRHLQVL 239 (722)
T ss_pred Hhhhhhhhhhhc--hHHh-hhHHHHHHHHHhhhhhhh--CCHHHh-CCceeeeecccCce----eecchhhhhhhhheee
Confidence 999999887662 2222 346778888888776332 122333 44589999999988 8889999999999999
Q ss_pred ccccccccCCCCCccc----ccCCCCCCEEEecCCC
Q 003957 711 SLDLCDASDGNFEIPD----YADRYSLSTVKITKCK 742 (784)
Q Consensus 711 ~L~~c~~~~~~~~l~~----~~~~~~L~~L~is~C~ 742 (784)
-|.+|+.. +-|+ .+..-=.++|+++-|.
T Consensus 240 ~LenNPLq----SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 240 QLENNPLQ----SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeccCCCC----CChHHHHhccceeeeeeecchhcc
Confidence 99999887 2233 2223346789999995
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.51 E-value=0.0024 Score=63.35 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=33.8
Q ss_pred hhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc
Q 003957 522 PAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC 586 (784)
Q Consensus 522 ~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c 586 (784)
|.+++|++|.++.+..-....+..+...+|+|++++++.|.|.+.....-++.+.+|..|++..|
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 34445555555554222223344445556677777776666665322233445556666666665
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.21 E-value=0.026 Score=40.33 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=31.0
Q ss_pred CCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCcC
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~ 745 (784)
++|++|++++|... .+|+ +.++++|+.|++++|+..+
T Consensus 1 ~~L~~L~l~~N~i~----~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT----DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S----SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc----ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999998777 6788 9999999999999998654
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.0062 Score=60.73 Aligned_cols=115 Identities=25% Similarity=0.244 Sum_probs=69.3
Q ss_pred CCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCC
Q 003957 575 LRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWP 653 (784)
Q Consensus 575 l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~ 653 (784)
+.+.++|+.++| ..|..+ ...+|.|+.|.|+- |+|+.. ..+..|++|++|.|..|.+.+-.-+.++ .++|
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSv--NkIssL---~pl~rCtrLkElYLRkN~I~sldEL~YL-knlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSV--NKISSL---APLQRCTRLKELYLRKNCIESLDELEYL-KNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeec--cccccc---hhHHHHHHHHHHHHHhcccccHHHHHHH-hcCc
Confidence 446777887777 344433 34557888888877 566532 2334677888888887776553333333 5788
Q ss_pred CCcEEeecCCCCCCHHHH----HHhhCCCCCCEEEcccCCCCCChhHHHHHHh
Q 003957 654 GLISLHLEECGDITAYGV----TSLFNCIALEDLLLRHNGPGIPRDFILDAAS 702 (784)
Q Consensus 654 ~L~~L~L~~c~~i~~~~~----~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~ 702 (784)
+|+.|.|..|+-....|. ..+.-+|+|+.||=.. ++.+...+++.
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~----VteeEle~ALr 137 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP----VTEEELEEALR 137 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhccCcc----ccHHHHHHHHh
Confidence 888888887664333222 1233577888776221 24466666654
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.07 E-value=0.049 Score=58.91 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=78.0
Q ss_pred hcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEee-eeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCC
Q 003957 523 AIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLY-FQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPN 601 (784)
Q Consensus 523 ~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~-~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~ 601 (784)
.+.+++.|++++| .+ ..++...++|++|.++ |+.++. ++..+ .++|+.|++++|.... ...++
T Consensus 50 ~~~~l~~L~Is~c-~L-----~sLP~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~------sLP~s 113 (426)
T PRK15386 50 EARASGRLYIKDC-DI-----ESLPVLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS------GLPES 113 (426)
T ss_pred HhcCCCEEEeCCC-CC-----cccCCCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc------ccccc
Confidence 4678999999988 33 3334434479999994 565533 12111 2478999999883211 12257
Q ss_pred ccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCC
Q 003957 602 LRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALE 681 (784)
Q Consensus 602 L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~ 681 (784)
|+.|++.. +.... +..+ .++|++|.+.+++-......... -.++|+.|.+.+|..+.. +.. -..+|+
T Consensus 114 Le~L~L~~--n~~~~--L~~L---PssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~L--P~~--LP~SLk 180 (426)
T PRK15386 114 VRSLEIKG--SATDS--IKNV---PNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIIL--PEK--LPESLQ 180 (426)
T ss_pred cceEEeCC--CCCcc--cccC---cchHhheeccccccccccccccc--cCCcccEEEecCCCcccC--ccc--ccccCc
Confidence 88888875 33321 2222 23688888865332111000100 125799999999885531 111 135788
Q ss_pred EEEcccC
Q 003957 682 DLLLRHN 688 (784)
Q Consensus 682 ~L~L~~n 688 (784)
.|+++.+
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 8888765
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.63 E-value=0.038 Score=52.86 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=51.3
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCcc
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLK 463 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~ 463 (784)
..+...++|+++.......+ ..++.|..|.+.+|+++.+...--. .++|..|.+.+|.+...+--.-...||.|+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~l----p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNL----PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccceecccccchhhcccC----CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 44567777777765332222 5667888888888887766533222 467888888887654433222235778888
Q ss_pred EEeccCC
Q 003957 464 YLNARGC 470 (784)
Q Consensus 464 ~L~L~~c 470 (784)
+|.+-+.
T Consensus 117 ~Ltll~N 123 (233)
T KOG1644|consen 117 YLTLLGN 123 (233)
T ss_pred eeeecCC
Confidence 8877665
No 70
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.55 E-value=0.04 Score=34.33 Aligned_cols=23 Identities=30% Similarity=0.738 Sum_probs=12.1
Q ss_pred CCCCCeEecCCCCccCHHHHHHH
Q 003957 316 CVSLGYINIKGCVSVTDVCISNL 338 (784)
Q Consensus 316 ~~~L~~L~L~~c~~l~~~~l~~l 338 (784)
|++|++|+|++|..++|.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 34555555555555555555444
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.38 E-value=0.012 Score=52.51 Aligned_cols=83 Identities=19% Similarity=0.137 Sum_probs=42.7
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
.|+..++++|..-. ....+...++.++.|+++++. +.+...+ +..+++|+.|+++.|.+ ...++.+..+.+|
T Consensus 54 el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aLr~lNl~~N~l----~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 54 ELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPALRSLNLRFNPL----NAEPRVIAPLIKL 125 (177)
T ss_pred eEEEEecccchhhh--CCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHhhhcccccCcc----ccchHHHHHHHhH
Confidence 45555555554322 122233345556666666644 5444333 55666666666666655 4444554445555
Q ss_pred ceecccccccc
Q 003957 708 RLVSLDLCDAS 718 (784)
Q Consensus 708 ~~L~L~~c~~~ 718 (784)
-.|+..++...
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 55555544433
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.34 E-value=0.016 Score=57.61 Aligned_cols=113 Identities=19% Similarity=0.111 Sum_probs=74.6
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhh-CCCCCCEEEcccCCCCCChhHHHHHHhc
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLF-NCIALEDLLLRHNGPGIPRDFILDAASK 703 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~-~~~~L~~L~L~~n~~gl~~~~~~~~l~~ 703 (784)
.+..|+.|++.++...+-.. + -.+|+|+.|.++.+..-...++..+. .+|+|+.|+++.|++ .+-.-..-+..
T Consensus 41 ~~~~le~ls~~n~gltt~~~---~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki--~~lstl~pl~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN---F-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI--KDLSTLRPLKE 114 (260)
T ss_pred cccchhhhhhhccceeeccc---C-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc--ccccccchhhh
Confidence 34577888888887765211 1 23788999999988543334444443 689999999999976 32122233677
Q ss_pred CCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCC
Q 003957 704 MPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 704 l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
+.+|..|++.+|....-.-.-.. |.-+++|++||-..+..
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 88899999999987631100111 66778888888766553
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.23 E-value=0.0046 Score=68.74 Aligned_cols=15 Identities=13% Similarity=0.096 Sum_probs=8.2
Q ss_pred cCCCCCCEEEecCCC
Q 003957 728 ADRYSLSTVKITKCK 742 (784)
Q Consensus 728 ~~~~~L~~L~is~C~ 742 (784)
...+.++.+.+..++
T Consensus 302 ~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 302 SAAPTLVTLTLELNP 316 (414)
T ss_pred cccccccccccccCc
Confidence 344555666665554
No 74
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.09 E-value=0.0041 Score=67.92 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=40.1
Q ss_pred chhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhc
Q 003957 379 RNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHG 458 (784)
Q Consensus 379 ~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~ 458 (784)
|.....+.+|+.|.+..+... .....+ . .-.|..|+++.|+++...+.---...|++|.|.+|.+.........++
T Consensus 182 psql~~l~slr~l~vrRn~l~--~lp~El-~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kG 257 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRRNHLE--DLPEEL-C-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKG 257 (722)
T ss_pred hHHhhhHHHHHHHHHhhhhhh--hCCHHH-h-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhcc
Confidence 333455555666666555432 111112 1 334556666666555444322224566666666665544333222222
Q ss_pred C-CCccEEeccCC
Q 003957 459 N-SGLKYLNARGC 470 (784)
Q Consensus 459 l-~~L~~L~L~~c 470 (784)
. .=.++|+..-|
T Consensus 258 kVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 258 KVHIFKYLSTQAC 270 (722)
T ss_pred ceeeeeeecchhc
Confidence 2 22455555544
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.27 E-value=0.09 Score=32.71 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=17.8
Q ss_pred CCccceEecccccccChHHHHHHH
Q 003957 208 FPSLRTIKAAYHLDFKTLNLHKLV 231 (784)
Q Consensus 208 ~~~L~~L~L~~~~~l~~~~l~~l~ 231 (784)
|++|++|++++|.+++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 567777777777777777777665
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.68 E-value=0.02 Score=63.70 Aligned_cols=173 Identities=23% Similarity=0.204 Sum_probs=97.3
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChH-HHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNN-DLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~-~l~~l~~~~~~ 628 (784)
+..++.+.+..+.+.. ...-+..+++|+.|++.++... .+......+++|++|++++ +.|++. ++.. ++.
T Consensus 71 l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~--N~I~~i~~l~~----l~~ 141 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSF--NKITKLEGLST----LTL 141 (414)
T ss_pred hHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheeccc--cccccccchhh----ccc
Confidence 4456666666666554 2223456678888888777211 1111123457888888888 667642 3322 345
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHH-HHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGV-TSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~-~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
|+.|++++|.+..-.. . ..++.|+.+++.+|. ++.... . ...+.+++.+++..|.+ ..+ +.+..+..+
T Consensus 142 L~~L~l~~N~i~~~~~---~-~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i----~~i-~~~~~~~~l 210 (414)
T KOG0531|consen 142 LKELNLSGNLISDISG---L-ESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSI----REI-EGLDLLKKL 210 (414)
T ss_pred hhhheeccCcchhccC---C-ccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCch----hcc-cchHHHHHH
Confidence 8888888887655211 1 226778888888776 443322 2 35677888888888754 211 122223334
Q ss_pred ceeccccccccCCCCCcccccCCCC--CCEEEecCCCCcCc
Q 003957 708 RLVSLDLCDASDGNFEIPDYADRYS--LSTVKITKCKSKNR 746 (784)
Q Consensus 708 ~~L~L~~c~~~~~~~~l~~~~~~~~--L~~L~is~C~~~~~ 746 (784)
..+++..+.... +.......+ |+.++++++...+.
T Consensus 211 ~~~~l~~n~i~~----~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 211 VLLSLLDNKISK----LEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred HHhhccccccee----ccCcccchhHHHHHHhcccCccccc
Confidence 444555444331 111233333 89999999987664
No 77
>PHA03098 kelch-like protein; Provisional
Probab=92.54 E-value=0.076 Score=61.34 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=57.0
Q ss_pred ccccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhheeeeeeheeccc
Q 003957 3 AMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRISILPLWFAAG 77 (784)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (784)
+..+..|..+|++.|...+++++|.|.+|.++.+|++.|++.+.+.-. ..=..+++.||+.+++-.+...
T Consensus 140 v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~-----~~~~~ll~~vR~~~~~~~~l~~ 209 (534)
T PHA03098 140 IYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKY-----KDICLILKVLRITFLSEEGIKK 209 (534)
T ss_pred HhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhH-----hHHHHHHhhccccccCHHHHHH
Confidence 345678999999999999999999999999999999999998764331 1224689999999887765543
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.23 E-value=0.35 Score=29.30 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=12.3
Q ss_pred CCCCCEEEeeCCCCCHHHHHHh
Q 003957 342 CVKLQSIIVCDTSFGVYSIRAL 363 (784)
Q Consensus 342 ~~~L~~L~Ls~~~i~~~~l~~l 363 (784)
|++|++|++++|.|++.++.++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3566666666666666666554
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.75 E-value=0.79 Score=29.04 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=19.6
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
++|+.|+|++|.+++.|...+|..+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 4688888888888888888776543
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.36 E-value=1.3 Score=26.70 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=10.3
Q ss_pred CCcCEEEecCCccchhhHHHH
Q 003957 435 SSLEMLDVSDTMISGAALAYM 455 (784)
Q Consensus 435 ~~L~~L~Ls~~~i~~~~l~~~ 455 (784)
++|++|+|++|.+++.+...+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 345556666666555555443
No 81
>PHA02713 hypothetical protein; Provisional
Probab=78.51 E-value=1.1 Score=51.67 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=52.6
Q ss_pred ccccccccccchhhhhccccCCc-ccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhheeeeeeh
Q 003957 3 AMSHKSFVNIPYSLLLECVKHPS-LTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRISILPL 72 (784)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (784)
+..+..|-.+|++-|...+.+.. |.|.+|..+.+|++.|++.+.+.-+ .-..+|+.||+.+++-
T Consensus 158 v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~------~~~~ll~~VR~~~l~~ 222 (557)
T PHA02713 158 LITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEE------QLLCILSCIDIQNLDK 222 (557)
T ss_pred HhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHH------HHhhhHhhhhHhhcch
Confidence 34567899999999999999977 8999999999999999999865422 1237899999977654
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.91 E-value=3.5 Score=26.04 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=16.9
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESL 575 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l 575 (784)
++|++|+|+.|.+++.|...+.+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 4577777777777777776655443
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=72.89 E-value=1 Score=40.53 Aligned_cols=9 Identities=22% Similarity=0.726 Sum_probs=3.4
Q ss_pred CCCCCEEEc
Q 003957 677 CIALEDLLL 685 (784)
Q Consensus 677 ~~~L~~L~L 685 (784)
+++|+.+++
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 444444444
No 84
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=71.22 E-value=2 Score=49.69 Aligned_cols=71 Identities=23% Similarity=0.409 Sum_probs=61.1
Q ss_pred ccccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhheeeeeeheecccc
Q 003957 3 AMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRISILPLWFAAGK 78 (784)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (784)
+....-|-.+|-+-|...|..-+|.|++|.++.+|++.|+..+.+. ....-..+++.||+.++|..|..+.
T Consensus 169 v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~-----R~~~~~~ll~~vr~~ll~~~~l~~~ 239 (571)
T KOG4441|consen 169 VSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEE-----REEHLPALLEAVRLPLLPPQFLVEI 239 (571)
T ss_pred HhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhh-----HHHHHHHHHHhcCccCCCHHHHHHH
Confidence 3455667789999999999999999999999999999999998766 3345678999999999999998864
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.83 E-value=6.2 Score=43.97 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=20.3
Q ss_pred cCCCCccEEEccCCCCCCCh-HHHHHHHhcCCCCcEEEecCC
Q 003957 597 LPLPNLRKLKLERVTPWMTN-NDLVILTQNCSELVELSLVGC 637 (784)
Q Consensus 597 ~~~~~L~~L~L~~c~~~l~~-~~l~~l~~~~~~L~~L~Ls~c 637 (784)
...|.+..+.++. |.+-+ .++..+.+..|.|..|+|++|
T Consensus 215 ~n~p~i~sl~lsn--NrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSN--NRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeeccc--chhhchhhhhHHHHhcchhheeecccc
Confidence 3445555555555 33333 344455555556666666665
No 86
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=68.81 E-value=2 Score=38.50 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=46.7
Q ss_pred hcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhc
Q 003957 624 QNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASK 703 (784)
Q Consensus 624 ~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~ 703 (784)
.+|++|+.+.+... ... .......++++|+.+.+.+. +...+-..+.++++|+.+.+..+. . .....++..
T Consensus 9 ~~~~~l~~i~~~~~-~~~--I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~~---~-~i~~~~F~~ 79 (129)
T PF13306_consen 9 YNCSNLESITFPNT-IKK--IGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNNL---K-SIGDNAFSN 79 (129)
T ss_dssp TT-TT--EEEETST---E--E-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETSTT-----EE-TTTTTT
T ss_pred hCCCCCCEEEECCC-eeE--eChhhccccccccccccccc--ccccceeeeecccccccccccccc---c-ccccccccc
Confidence 34566777776632 111 11222345667777777652 444444455677778888886531 1 233344666
Q ss_pred CCCCceeccccccccCCCCCccc--ccCCCCCCEEEecC
Q 003957 704 MPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITK 740 (784)
Q Consensus 704 l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~ 740 (784)
+++|+.+.+... +. .++. +.++ .|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~---~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--IT---EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---B---EEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--cc---EEchhhhcCC-CceEEEECC
Confidence 788888887543 21 1233 6666 777777764
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.13 E-value=7.2 Score=43.47 Aligned_cols=84 Identities=20% Similarity=0.110 Sum_probs=64.4
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC--cCch-hhhhhcccCCcCEEEecCCccchh------hHH
Q 003957 383 TLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT--QLAD-KALYNFSGSSLEMLDVSDTMISGA------ALA 453 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~--~l~~-~~~~~l~~~~L~~L~Ls~~~i~~~------~l~ 453 (784)
.+.+.+..++|++|....-..+..+...-|+|+.|+|++| .+.. ..+..+.+..|++|-+.||.+... -..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 4677889999999988777788888889999999999998 4433 335666678999999999965332 233
Q ss_pred HHHhcCCCccEEe
Q 003957 454 YMVHGNSGLKYLN 466 (784)
Q Consensus 454 ~~~~~l~~L~~L~ 466 (784)
++....|+|..|+
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 4555779998886
No 88
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=64.29 E-value=5.8 Score=21.79 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=4.9
Q ss_pred CCcEEEecCCC
Q 003957 628 ELVELSLVGCT 638 (784)
Q Consensus 628 ~L~~L~Ls~c~ 638 (784)
+|+.|++++|+
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555554
No 89
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=54.48 E-value=5.7 Score=23.39 Aligned_cols=9 Identities=22% Similarity=0.187 Sum_probs=3.6
Q ss_pred Cceeccccc
Q 003957 707 LRLVSLDLC 715 (784)
Q Consensus 707 L~~L~L~~c 715 (784)
|++|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 334444444
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=39.85 E-value=22 Score=21.64 Aligned_cols=13 Identities=46% Similarity=0.600 Sum_probs=5.9
Q ss_pred cccEEEecCCcCc
Q 003957 413 KLKSLCLSGTQLA 425 (784)
Q Consensus 413 ~L~~L~Ls~~~l~ 425 (784)
+|+.|+|++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444433
No 91
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=39.85 E-value=22 Score=21.64 Aligned_cols=13 Identities=46% Similarity=0.600 Sum_probs=5.9
Q ss_pred cccEEEecCCcCc
Q 003957 413 KLKSLCLSGTQLA 425 (784)
Q Consensus 413 ~L~~L~Ls~~~l~ 425 (784)
+|+.|+|++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444433
No 92
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=29.94 E-value=36 Score=21.12 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=10.1
Q ss_pred CCeEecCCCCccCHHHHHHHHHhC
Q 003957 319 LGYINIKGCVSVTDVCISNLIRRC 342 (784)
Q Consensus 319 L~~L~L~~c~~l~~~~l~~l~~~~ 342 (784)
|++|.|.....-.+..+..++.+|
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~C 25 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGC 25 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccC
Confidence 444444443332333444444444
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=23.33 E-value=4.7e+02 Score=29.24 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=30.6
Q ss_pred CCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCC-CCCccc-ccCCCCCCEEEecCCCCcCccc
Q 003957 680 LEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDG-NFEIPD-YADRYSLSTVKITKCKSKNRNL 748 (784)
Q Consensus 680 L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~-~~~l~~-~~~~~~L~~L~is~C~~~~~~~ 748 (784)
+..+.++.|..+-.-+.....+..-+.+.+|+++++..-.+ .-.+|. ...-..++.+.++.+.....++
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~gl 485 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPGL 485 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcccccc
Confidence 55555555543111112222234445566666666543321 112233 3334455666666555444443
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.87 E-value=1.1e+02 Score=33.93 Aligned_cols=166 Identities=14% Similarity=-0.043 Sum_probs=83.1
Q ss_pred CCccEEecCCCCCCChHH-HHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhC-CCCCEEEeeCCCCCHHHHHHhhccCC
Q 003957 291 SKITKLTLEGRSDMCDAD-LEFISKYCVSLGYINIKGCVSVTDVCISNLIRRC-VKLQSIIVCDTSFGVYSIRALCSEVP 368 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~-l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~-~~L~~L~Ls~~~i~~~~l~~l~~~l~ 368 (784)
..+.+++|+.+..-++.. ...+...-..+++++.++-..-.+..+..++.+| +++...+++.+........+..
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg---- 289 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGG---- 289 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccc----
Confidence 357889998876544321 1122222335788888774334455555555555 6788888887755432222111
Q ss_pred ccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHH----h-CccccEEEecCCcCchhh--hhhcccCCcCEEE
Q 003957 369 YCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMC----Q-ARKLKSLCLSGTQLADKA--LYNFSGSSLEMLD 441 (784)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~----~-~~~L~~L~Ls~~~l~~~~--~~~l~~~~L~~L~ 441 (784)
......+..-+++ +|++..|..- +..+..++- + -+.=-.++++.|...+.. .....+..+++|+
T Consensus 290 -------~~~k~~fS~~~sg-hln~~~~~~p-sE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~ 360 (553)
T KOG4242|consen 290 -------GAEKDTFSPDPSG-HLNSRPRYTP-SEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLL 360 (553)
T ss_pred -------cccccccCcCccc-ccccccccCc-hhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEee
Confidence 1123334555667 7888776542 233333211 1 111123444444333222 1122245788888
Q ss_pred ecCCccchhhHHH-HHhcCCCccEEeccC
Q 003957 442 VSDTMISGAALAY-MVHGNSGLKYLNARG 469 (784)
Q Consensus 442 Ls~~~i~~~~l~~-~~~~l~~L~~L~L~~ 469 (784)
+..|+...++-.. -....+..+.+.+.+
T Consensus 361 ~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 361 QRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred ccccccccccccccceeeccccccccccc
Confidence 8887654433211 113345666666644
No 95
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=22.12 E-value=91 Score=32.85 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=59.8
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHH---HhCccccEEEecCCcCchhhhhhcc-----cCCcCEEEecCCccchhhHHH
Q 003957 383 TLASNLQMLHMACCNGVDGMYLLELM---CQARKLKSLCLSGTQLADKALYNFS-----GSSLEMLDVSDTMISGAALAY 454 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~l~~~~l~~l~---~~~~~L~~L~Ls~~~l~~~~~~~l~-----~~~L~~L~Ls~~~i~~~~l~~ 454 (784)
.+=+.++..++.+...++...+..+. ......+...+.+++..+....++. +.+|+.|++++|.|++.++.+
T Consensus 195 ~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a 274 (353)
T KOG3735|consen 195 ENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMA 274 (353)
T ss_pred cCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHH
Confidence 45678999999998888876666553 3455666677777766665544443 689999999999999988877
Q ss_pred HHhcC---CCccEEec
Q 003957 455 MVHGN---SGLKYLNA 467 (784)
Q Consensus 455 ~~~~l---~~L~~L~L 467 (784)
+...+ .+|..+.+
T Consensus 275 ~~~al~~n~tl~el~~ 290 (353)
T KOG3735|consen 275 LLRALQSNKSLTELKN 290 (353)
T ss_pred HHHHHhccchhhHhhh
Confidence 65444 34544444
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=21.67 E-value=76 Score=19.76 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=9.2
Q ss_pred CCCCEEEcccCCC
Q 003957 678 IALEDLLLRHNGP 690 (784)
Q Consensus 678 ~~L~~L~L~~n~~ 690 (784)
++|+.|++++|.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 5677777777754
No 97
>PF08565 CDC37_M: Cdc37 Hsp90 binding domain; InterPro: IPR013874 Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the Hsp90 chaperone (heat shock protein 90) binding domain of Cdc37 []. It is found between the N-terminal Cdc37 domain IPR013855 from INTERPRO, which is predominantly involved in kinase binding, and the C-terminal domain of Cdc37 IPR013873 from INTERPRO whose function is unclear. ; PDB: 1US7_B 2W0G_A 2K5B_B.
Probab=21.36 E-value=38 Score=32.33 Aligned_cols=38 Identities=34% Similarity=0.564 Sum_probs=24.7
Q ss_pred ccccccc----hhhhhccccCCcccccccchhhHHHHHH-HHhhHh
Q 003957 7 KSFVNIP----YSLLLECVKHPSLTVDSEMHLSDALLIW-IDANIA 47 (784)
Q Consensus 7 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 47 (784)
+-||.|| -+-.--..+||||- +| |-+|||++| +++.++
T Consensus 52 ~~F~~i~~~dy~~S~~fL~~hp~l~--~E-~~~d~Ll~~af~~eme 94 (173)
T PF08565_consen 52 EKFGMIPSGDYEDSEQFLLEHPELL--CE-QTADALLMWAFDLEME 94 (173)
T ss_dssp HHHHC----SHHHHHHHHHHCGGG---SH-HHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCHHHHHHHHHhCcccc--Ch-hhccHHHHHHHHHHHc
Confidence 4688888 33344467999995 45 569999999 466554
No 98
>PHA02790 Kelch-like protein; Provisional
Probab=20.80 E-value=55 Score=37.13 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=31.1
Q ss_pred ccccccchhhhhccccCCcccccccchhhHHHHHHHHh
Q 003957 7 KSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDA 44 (784)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (784)
..|-.+|. ...+.+.+|.|.+|.++-+|++.|++.
T Consensus 161 ~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~ 195 (480)
T PHA02790 161 DNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMK 195 (480)
T ss_pred hhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHh
Confidence 46777774 678999999999999999999999995
Done!