Query 003957
Match_columns 784
No_of_seqs 423 out of 3314
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 100.0 4.9E-30 1.7E-34 298.2 36.2 387 289-716 110-524 (592)
2 2p1m_B Transport inhibitor res 100.0 1.8E-29 6.1E-34 293.6 39.8 407 289-739 103-539 (594)
3 2p1m_B Transport inhibitor res 100.0 5.2E-30 1.8E-34 298.1 34.8 435 180-716 64-542 (594)
4 3ogk_B Coronatine-insensitive 100.0 9.1E-30 3.1E-34 295.9 34.0 416 289-748 71-530 (592)
5 3rgz_A Protein brassinosteroid 100.0 1.2E-31 4.2E-36 320.3 6.2 488 180-743 149-716 (768)
6 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-30 7.9E-35 306.0 9.0 490 180-743 71-596 (680)
7 3rgz_A Protein brassinosteroid 100.0 7E-31 2.4E-35 313.9 2.6 466 182-743 77-550 (768)
8 3t6q_A CD180 antigen; protein- 100.0 3.9E-30 1.3E-34 300.0 7.0 471 180-745 55-561 (606)
9 3t6q_A CD180 antigen; protein- 100.0 3.5E-30 1.2E-34 300.3 3.3 470 181-746 32-538 (606)
10 1z7x_W Ribonuclease inhibitor; 100.0 2.5E-26 8.5E-31 258.4 31.3 164 290-470 55-237 (461)
11 1z7x_W Ribonuclease inhibitor; 100.0 3.5E-26 1.2E-30 257.1 31.4 365 291-690 3-410 (461)
12 1ziw_A TOLL-like receptor 3; i 99.9 3.3E-28 1.1E-32 287.6 10.0 486 180-744 47-573 (680)
13 3vq2_A TLR4, TOLL-like recepto 99.9 4.1E-28 1.4E-32 282.8 10.5 463 180-744 54-558 (606)
14 2z81_A CD282 antigen, TOLL-lik 99.9 3.1E-27 1.1E-31 272.0 16.2 476 176-746 20-512 (549)
15 3vq2_A TLR4, TOLL-like recepto 99.9 6.2E-28 2.1E-32 281.3 8.4 228 497-744 303-534 (606)
16 2z63_A TOLL-like receptor 4, v 99.9 2.8E-27 9.5E-32 273.6 5.2 224 502-746 305-533 (570)
17 3j0a_A TOLL-like receptor 5; m 99.9 1.8E-27 6.2E-32 287.3 -1.9 265 435-743 266-538 (844)
18 2z81_A CD282 antigen, TOLL-lik 99.9 2.8E-24 9.5E-29 247.3 20.8 413 287-746 46-488 (549)
19 2z7x_B TOLL-like receptor 1, v 99.9 3.4E-25 1.2E-29 253.2 13.0 206 522-746 273-483 (520)
20 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-25 4.3E-30 271.2 7.4 469 176-745 19-518 (844)
21 2z63_A TOLL-like receptor 4, v 99.9 1.9E-26 6.5E-31 266.7 -4.6 457 182-718 28-531 (570)
22 4eco_A Uncharacterized protein 99.9 4.1E-25 1.4E-29 258.0 0.9 328 341-747 247-603 (636)
23 2z7x_B TOLL-like receptor 1, v 99.9 4.3E-23 1.5E-27 235.7 16.4 397 291-745 21-458 (520)
24 1o6v_A Internalin A; bacterial 99.9 3.2E-22 1.1E-26 225.0 21.7 142 290-470 45-187 (466)
25 4ecn_A Leucine-rich repeat pro 99.9 1.3E-23 4.5E-28 249.8 10.1 323 341-747 489-843 (876)
26 4fmz_A Internalin; leucine ric 99.9 1E-21 3.5E-26 212.0 23.2 302 341-743 42-345 (347)
27 4eco_A Uncharacterized protein 99.9 1E-24 3.5E-29 254.7 -1.1 347 335-743 198-578 (636)
28 4ecn_A Leucine-rich repeat pro 99.9 4.3E-24 1.5E-28 254.0 3.7 153 289-470 489-654 (876)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.5E-23 1.2E-27 238.7 9.3 459 181-745 30-511 (562)
30 3v47_A TOLL-like receptor 5B a 99.9 6.2E-22 2.1E-26 222.1 15.6 353 343-746 30-410 (455)
31 1o6v_A Internalin A; bacterial 99.9 3.9E-21 1.3E-25 216.2 21.1 339 316-745 45-389 (466)
32 4g8a_A TOLL-like receptor 4; l 99.9 1.4E-22 4.7E-27 237.2 8.4 467 180-744 74-580 (635)
33 4g8a_A TOLL-like receptor 4; l 99.9 1.9E-22 6.6E-27 235.9 7.8 422 288-746 97-557 (635)
34 4fmz_A Internalin; leucine ric 99.8 2.2E-20 7.4E-25 201.6 21.1 147 550-717 198-345 (347)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.1E-21 7.2E-26 223.8 10.1 392 287-745 72-487 (562)
36 2id5_A Lingo-1, leucine rich r 99.8 2.7E-20 9.1E-25 210.1 10.4 300 385-718 31-333 (477)
37 3bz5_A Internalin-J, INLJ; leu 99.8 8.4E-20 2.9E-24 204.0 12.2 103 598-743 284-386 (457)
38 1jl5_A Outer protein YOPM; leu 99.8 1.8E-20 6.1E-25 209.3 5.9 33 705-743 396-428 (454)
39 3v47_A TOLL-like receptor 5B a 99.8 2E-19 6.7E-24 201.7 12.9 304 411-745 29-385 (455)
40 3o6n_A APL1; leucine-rich repe 99.8 1E-19 3.6E-24 199.6 8.8 310 384-746 43-354 (390)
41 3bz5_A Internalin-J, INLJ; leu 99.8 5.3E-19 1.8E-23 197.5 14.4 141 288-470 39-180 (457)
42 2ast_B S-phase kinase-associat 99.8 7.4E-18 2.5E-22 180.8 22.7 254 387-718 48-306 (336)
43 2id5_A Lingo-1, leucine rich r 99.8 1.3E-19 4.5E-24 204.4 6.8 296 412-742 32-331 (477)
44 2ast_B S-phase kinase-associat 99.8 8.2E-18 2.8E-22 180.4 18.2 213 524-746 92-308 (336)
45 3oja_B Anopheles plasmodium-re 99.8 4.2E-19 1.4E-23 205.8 7.7 307 384-743 49-357 (597)
46 3o6n_A APL1; leucine-rich repe 99.8 1.1E-18 3.9E-23 191.3 10.6 289 410-748 43-335 (390)
47 1jl5_A Outer protein YOPM; leu 99.7 7.4E-19 2.5E-23 196.2 6.7 321 291-718 91-429 (454)
48 2ca6_A RAN GTPase-activating p 99.7 7.9E-17 2.7E-21 176.4 21.3 159 551-714 159-339 (386)
49 3oja_B Anopheles plasmodium-re 99.7 7.1E-18 2.4E-22 195.5 10.8 289 410-748 49-341 (597)
50 2ca6_A RAN GTPase-activating p 99.7 3.2E-16 1.1E-20 171.4 22.4 165 549-718 120-316 (386)
51 1xku_A Decorin; proteoglycan, 99.7 4.1E-17 1.4E-21 174.6 6.7 201 525-741 121-329 (330)
52 2ft3_A Biglycan; proteoglycan, 99.6 4.9E-17 1.7E-21 174.1 0.8 178 550-742 146-331 (332)
53 3o53_A Protein LRIM1, AGAP0063 99.6 5.7E-17 2E-21 172.3 1.2 290 388-748 12-303 (317)
54 2z80_A TOLL-like receptor 2, v 99.6 9.2E-16 3.1E-20 165.7 10.4 136 599-746 173-316 (353)
55 3goz_A Leucine-rich repeat-con 99.6 1.9E-14 6.5E-19 155.8 18.9 79 391-471 3-91 (362)
56 2z80_A TOLL-like receptor 2, v 99.6 1.2E-15 4.1E-20 164.7 9.4 83 385-470 51-134 (353)
57 3goz_A Leucine-rich repeat-con 99.6 2.8E-14 9.4E-19 154.6 18.7 146 309-470 14-177 (362)
58 1xku_A Decorin; proteoglycan, 99.6 1.2E-15 4E-20 163.2 7.6 270 343-688 52-329 (330)
59 3g06_A SSPH2 (leucine-rich rep 99.6 5.8E-15 2E-19 169.9 12.9 257 343-718 40-297 (622)
60 2ft3_A Biglycan; proteoglycan, 99.6 1.9E-16 6.4E-21 169.6 -1.7 269 385-716 53-331 (332)
61 1wwl_A Monocyte differentiatio 99.6 2.2E-16 7.6E-21 167.4 -1.5 156 576-745 149-310 (312)
62 1ogq_A PGIP-2, polygalacturona 99.5 1.1E-16 3.7E-21 169.8 -4.2 105 629-743 199-303 (313)
63 3o53_A Protein LRIM1, AGAP0063 99.5 9.9E-17 3.4E-21 170.5 -5.3 196 521-742 76-273 (317)
64 1ogq_A PGIP-2, polygalacturona 99.5 6.7E-16 2.3E-20 163.7 -1.2 252 343-666 50-304 (313)
65 4fcg_A Uncharacterized protein 99.5 2.4E-15 8.2E-20 160.4 2.8 222 500-742 80-312 (328)
66 3zyi_A Leucine-rich repeat-con 99.5 6.6E-15 2.2E-19 164.6 4.7 224 501-742 75-301 (452)
67 3g06_A SSPH2 (leucine-rich rep 99.5 2E-14 6.9E-19 165.4 8.6 248 343-705 61-308 (622)
68 2z66_A Variable lymphocyte rec 99.5 1.1E-15 3.6E-20 161.7 -2.5 85 652-743 174-260 (306)
69 3zyj_A Leucine-rich repeat-con 99.5 7.4E-15 2.5E-19 163.6 4.1 224 501-742 64-290 (440)
70 3oja_A Leucine-rich immune mol 99.5 8.4E-15 2.9E-19 164.9 3.9 242 410-718 32-275 (487)
71 3zyj_A Leucine-rich repeat-con 99.5 4.4E-15 1.5E-19 165.4 1.5 130 550-689 159-290 (440)
72 3zyi_A Leucine-rich repeat-con 99.5 5.3E-15 1.8E-19 165.3 1.7 130 550-689 170-301 (452)
73 4fcg_A Uncharacterized protein 99.4 1.3E-14 4.3E-19 154.8 2.2 128 341-509 181-309 (328)
74 2z66_A Variable lymphocyte rec 99.4 9.1E-15 3.1E-19 154.4 0.4 231 343-642 28-263 (306)
75 4glp_A Monocyte differentiatio 99.4 8.3E-14 2.8E-18 147.4 5.3 231 501-745 64-308 (310)
76 1h6u_A Internalin H; cell adhe 99.4 4E-13 1.4E-17 141.8 10.3 189 524-743 40-229 (308)
77 1wwl_A Monocyte differentiatio 99.4 1.4E-14 4.7E-19 153.5 -1.1 158 288-470 40-211 (312)
78 1ozn_A Reticulon 4 receptor; N 99.4 3.1E-14 1.1E-18 148.6 1.6 181 550-744 55-238 (285)
79 3oja_A Leucine-rich immune mol 99.4 1E-13 3.4E-18 156.1 3.0 170 382-586 54-224 (487)
80 1ozn_A Reticulon 4 receptor; N 99.4 7.7E-13 2.6E-17 138.1 8.1 61 599-664 176-236 (285)
81 4glp_A Monocyte differentiatio 99.3 2.3E-12 8E-17 136.2 7.8 160 385-586 63-234 (310)
82 1h6u_A Internalin H; cell adhe 99.3 1.4E-11 4.7E-16 130.0 13.5 57 180-245 39-95 (308)
83 2z62_A TOLL-like receptor 4, v 99.3 3.9E-13 1.3E-17 139.6 -1.1 182 550-746 51-239 (276)
84 2o6q_A Variable lymphocyte rec 99.2 1.3E-12 4.4E-17 135.2 2.6 178 552-743 38-217 (270)
85 1p9a_G Platelet glycoprotein I 99.2 9.7E-13 3.3E-17 137.5 1.2 175 551-743 31-207 (290)
86 2z62_A TOLL-like receptor 4, v 99.2 7.1E-12 2.4E-16 130.0 6.7 112 340-471 121-235 (276)
87 3rfs_A Internalin B, repeat mo 99.2 7.6E-12 2.6E-16 129.5 5.5 179 523-717 39-217 (272)
88 3rfs_A Internalin B, repeat mo 99.2 1.3E-12 4.4E-17 135.3 -0.8 198 497-718 37-235 (272)
89 1h6t_A Internalin B; cell adhe 99.2 1.8E-11 6.3E-16 127.9 7.8 170 522-718 43-213 (291)
90 3un9_A NLR family member X1; l 99.2 2E-10 7E-15 124.0 15.8 163 524-690 71-251 (372)
91 4ezg_A Putative uncharacterize 99.2 4.1E-11 1.4E-15 117.5 7.6 108 625-744 86-194 (197)
92 2xwt_C Thyrotropin receptor; s 99.1 1.9E-11 6.4E-16 123.9 5.3 150 344-535 32-189 (239)
93 3un9_A NLR family member X1; l 99.1 3.8E-10 1.3E-14 121.9 15.4 59 412-470 72-136 (372)
94 4ezg_A Putative uncharacterize 99.1 4.9E-10 1.7E-14 109.7 14.5 109 341-475 42-151 (197)
95 1p9a_G Platelet glycoprotein I 99.1 7.1E-12 2.4E-16 131.0 -0.5 202 497-718 6-208 (290)
96 2xwt_C Thyrotropin receptor; s 99.1 1.9E-11 6.6E-16 123.8 2.7 85 572-664 151-237 (239)
97 1m9s_A Internalin B; cell inva 99.1 6E-11 2E-15 136.3 6.7 170 522-718 40-210 (605)
98 1h6t_A Internalin B; cell adhe 99.1 1.1E-10 3.8E-15 121.9 8.0 170 550-746 45-215 (291)
99 2o6q_A Variable lymphocyte rec 99.1 4.8E-11 1.6E-15 123.3 4.4 177 552-745 17-195 (270)
100 3e4g_A ATP synthase subunit S, 99.1 3.5E-10 1.2E-14 106.6 9.1 105 291-416 61-171 (176)
101 3sb4_A Hypothetical leucine ri 99.0 4E-10 1.4E-14 120.0 8.4 289 385-738 24-328 (329)
102 3m19_A Variable lymphocyte rec 99.0 1.1E-10 3.7E-15 119.2 3.8 111 625-745 81-193 (251)
103 3e4g_A ATP synthase subunit S, 99.0 7.4E-10 2.5E-14 104.4 9.1 86 601-689 62-150 (176)
104 1m9s_A Internalin B; cell inva 99.0 2.9E-10 9.9E-15 130.6 6.4 169 497-690 39-209 (605)
105 4ay9_X Follicle-stimulating ho 99.0 4.3E-11 1.5E-15 128.7 -0.9 224 501-740 30-255 (350)
106 3m19_A Variable lymphocyte rec 98.9 1E-10 3.5E-15 119.4 -0.3 157 552-718 36-192 (251)
107 3sb4_A Hypothetical leucine ri 98.9 2.3E-10 7.8E-15 121.9 2.2 80 624-711 247-327 (329)
108 1xeu_A Internalin C; cellular 98.9 1.2E-09 4.2E-14 112.1 6.8 144 550-717 40-184 (263)
109 2je0_A Acidic leucine-rich nuc 98.9 8.5E-10 2.9E-14 102.6 3.8 106 576-689 17-124 (149)
110 2o6s_A Variable lymphocyte rec 98.8 4.2E-10 1.5E-14 111.2 1.1 169 551-743 28-197 (208)
111 2ell_A Acidic leucine-rich nuc 98.8 1.2E-09 4E-14 103.9 3.5 87 625-718 69-160 (168)
112 2je0_A Acidic leucine-rich nuc 98.8 2.9E-09 1E-13 98.9 6.1 131 599-739 16-148 (149)
113 2ell_A Acidic leucine-rich nuc 98.8 6.4E-10 2.2E-14 105.8 1.5 137 599-745 23-161 (168)
114 2v70_A SLIT-2, SLIT homolog 2 98.8 6.2E-10 2.1E-14 111.0 1.1 132 601-744 33-166 (220)
115 3cvr_A Invasion plasmid antige 98.8 1.9E-09 6.5E-14 122.5 4.8 155 551-744 80-243 (571)
116 2ra8_A Uncharacterized protein 98.8 9.2E-08 3.1E-12 102.4 16.1 85 383-469 136-228 (362)
117 4ay9_X Follicle-stimulating ho 98.7 1.3E-09 4.3E-14 117.2 0.8 79 600-687 177-255 (350)
118 3e6j_A Variable lymphocyte rec 98.7 3.4E-09 1.2E-13 106.3 3.5 132 600-745 40-173 (229)
119 1io0_A Tropomodulin; LRR prote 98.7 1.2E-07 4.1E-12 91.5 13.9 125 309-449 28-165 (185)
120 1xeu_A Internalin C; cellular 98.7 4.9E-08 1.7E-12 100.0 11.7 101 340-470 38-138 (263)
121 1io0_A Tropomodulin; LRR prote 98.7 1.3E-07 4.4E-12 91.3 13.6 122 333-470 26-161 (185)
122 3cvr_A Invasion plasmid antige 98.7 2.1E-08 7.2E-13 113.9 9.1 191 182-455 59-250 (571)
123 2o6s_A Variable lymphocyte rec 98.7 5.8E-09 2E-13 102.9 3.6 149 576-742 28-176 (208)
124 2v9t_B SLIT homolog 2 protein 98.7 4.7E-09 1.6E-13 104.6 2.4 109 625-743 54-164 (220)
125 1dce_A Protein (RAB geranylger 98.7 5.8E-10 2E-14 127.3 -5.3 103 628-743 442-545 (567)
126 1a9n_A U2A', U2A'; complex (nu 98.6 4.3E-09 1.5E-13 100.9 0.6 82 652-742 63-151 (176)
127 2xot_A Amphoterin-induced prot 98.6 2.8E-09 9.6E-14 114.9 -0.8 157 551-718 39-202 (361)
128 2ra8_A Uncharacterized protein 98.6 3.5E-07 1.2E-11 97.8 15.5 84 496-584 134-227 (362)
129 1dce_A Protein (RAB geranylger 98.6 1.4E-09 4.7E-14 124.1 -4.9 83 521-607 482-567 (567)
130 1a9n_A U2A', U2A'; complex (nu 98.6 1.9E-08 6.6E-13 96.3 3.2 86 625-717 62-152 (176)
131 2v9t_B SLIT homolog 2 protein 98.6 8.3E-09 2.9E-13 102.8 0.6 133 551-718 32-165 (220)
132 2v70_A SLIT-2, SLIT homolog 2 98.6 9.1E-09 3.1E-13 102.5 0.3 86 551-639 32-117 (220)
133 2xot_A Amphoterin-induced prot 98.5 2.7E-08 9.2E-13 107.2 2.0 155 576-744 39-202 (361)
134 3e6j_A Variable lymphocyte rec 98.5 6.9E-08 2.4E-12 96.7 4.0 109 627-745 40-149 (229)
135 2wfh_A SLIT homolog 2 protein 98.4 1.4E-07 4.8E-12 91.7 4.3 105 628-743 32-138 (193)
136 4fdw_A Leucine rich hypothetic 98.3 3.8E-07 1.3E-11 99.3 6.6 132 572-716 222-356 (401)
137 2o6r_A Variable lymphocyte rec 98.3 2.1E-07 7.1E-12 89.1 3.7 109 627-745 28-138 (177)
138 1ds9_A Outer arm dynein; leuci 98.3 1.7E-07 5.6E-12 91.6 2.2 146 291-466 23-180 (198)
139 4b8c_D Glucose-repressible alc 98.3 1.7E-07 5.7E-12 110.4 2.6 108 624-744 221-329 (727)
140 1w8a_A SLIT protein; signaling 98.3 5.5E-08 1.9E-12 94.5 -1.9 84 652-742 53-137 (192)
141 1ds9_A Outer arm dynein; leuci 98.2 1.5E-07 5E-12 92.0 0.2 126 571-711 43-180 (198)
142 4fs7_A Uncharacterized protein 98.2 1.8E-07 6.3E-12 101.9 0.9 79 651-740 295-375 (394)
143 1w8a_A SLIT protein; signaling 98.2 2.8E-07 9.7E-12 89.4 1.9 129 579-718 11-139 (192)
144 4b8c_D Glucose-repressible alc 98.2 1.2E-07 4.2E-12 111.5 -1.1 152 569-741 217-369 (727)
145 2wfh_A SLIT homolog 2 protein 98.1 5.6E-07 1.9E-11 87.4 2.2 109 600-718 31-139 (193)
146 1pgv_A TMD-1, tropomodulin TMD 98.1 4.7E-05 1.6E-09 73.0 13.5 121 308-469 32-166 (197)
147 4fs7_A Uncharacterized protein 98.1 2.3E-06 7.9E-11 93.2 5.0 143 572-736 249-393 (394)
148 3g39_A Variable lymphocyte rec 98.0 2.6E-06 8.7E-11 80.8 4.6 104 628-744 10-115 (170)
149 1pgv_A TMD-1, tropomodulin TMD 98.0 6.5E-05 2.2E-09 72.0 13.0 118 290-423 40-168 (197)
150 4fdw_A Leucine rich hypothetic 97.9 2.6E-06 8.8E-11 92.7 2.2 215 502-743 136-357 (401)
151 2r9u_A Variable lymphocyte rec 97.8 8.5E-06 2.9E-10 77.5 4.1 102 630-744 15-118 (174)
152 2o6r_A Variable lymphocyte rec 97.8 1.3E-05 4.6E-10 76.3 5.2 104 628-744 8-113 (177)
153 2ifg_A High affinity nerve gro 97.6 3.4E-05 1.1E-09 82.2 4.0 63 652-717 30-92 (347)
154 3g39_A Variable lymphocyte rec 97.6 1.5E-05 5.1E-10 75.4 1.0 83 600-688 30-112 (170)
155 4gt6_A Cell surface protein; l 97.5 0.00011 3.7E-09 79.8 7.7 302 387-740 65-387 (394)
156 2r9u_A Variable lymphocyte rec 97.5 1.7E-05 5.9E-10 75.3 1.0 64 651-718 55-118 (174)
157 4gt6_A Cell surface protein; l 97.5 0.0001 3.4E-09 80.1 6.2 286 409-743 60-369 (394)
158 3rw6_A Nuclear RNA export fact 97.0 0.001 3.5E-08 67.3 7.4 87 622-712 165-258 (267)
159 3rw6_A Nuclear RNA export fact 97.0 0.00099 3.4E-08 67.4 7.2 85 383-467 167-258 (267)
160 2ifg_A High affinity nerve gro 96.9 0.00039 1.3E-08 73.9 3.6 90 378-471 24-114 (347)
161 4h09_A Hypothetical leucine ri 96.4 0.0088 3E-07 64.1 10.0 57 651-712 284-340 (379)
162 4h09_A Hypothetical leucine ri 95.7 0.0059 2E-07 65.5 4.2 126 598-741 215-343 (379)
163 3i3n_A Kelch-like protein 11; 94.1 0.016 5.5E-07 59.2 1.9 70 3-77 174-243 (279)
164 3hve_A Gigaxonin; ubiquitin, c 93.4 0.0074 2.5E-07 60.9 -2.2 69 4-77 167-235 (256)
165 2eqx_A Kelch repeat and BTB do 83.3 0.39 1.3E-05 40.6 1.5 56 4-67 44-99 (105)
166 3rfe_A Platelet glycoprotein I 66.6 1.9 6.7E-05 37.8 1.4 35 654-689 32-66 (130)
167 3rfe_A Platelet glycoprotein I 63.6 5.2 0.00018 34.9 3.7 37 679-718 32-68 (130)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.98 E-value=4.9e-30 Score=298.19 Aligned_cols=387 Identities=16% Similarity=0.167 Sum_probs=218.7
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHHcCCC-CCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 289 SPSKITKLTLEGRSDMCDADLEFISKYCVS-LGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 289 ~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~-L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
.+++|++|+|++| .+++..+..++..+++ |++|++++|..+++.++..+..+|++|++|++++|.+++.+...
T Consensus 110 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~----- 183 (592)
T 3ogk_B 110 NLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW----- 183 (592)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH-----
T ss_pred hCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH-----
Confidence 4688888888887 5777777777776666 89999988887778888888888888888888888765432111
Q ss_pred CccCcccccccchhhhcCCCccEEEecCCCC--CCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecC
Q 003957 368 PYCNSSALCGKRNFNTLASNLQMLHMACCNG--VDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSD 444 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~ 444 (784)
++.....+++|++|+++++.. ++...+..+...+++|+.|++++|.+.+.. ..+. .++|++|++++
T Consensus 184 ----------l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 184 ----------LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGS 252 (592)
T ss_dssp ----------HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECB
T ss_pred ----------HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccc
Confidence 112335677888888877654 345666666677788888877776655422 1222 45666666654
Q ss_pred Ccc--chhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEecc-ccCcccHhhhh
Q 003957 445 TMI--SGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGW-GFSFLSLEVLK 521 (784)
Q Consensus 445 ~~i--~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~ 521 (784)
+.. ........+..+++|+.|.+.++.. ..+...+..+++|++|++++ .++.......+
T Consensus 253 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------------------~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGP------------------NEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp CCCCTTCTTSSSCCCCCTTCCEEEETTCCT------------------TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred cccccchHHHHHHhhccccccccCccccch------------------hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 311 1011111123445555555543210 11122333455566666632 22322333334
Q ss_pred hhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEee-----------eeccChHHHHHHHhhCCCCcEEEeccc-CCh
Q 003957 522 PAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLY-----------FQVMSDSIIINILESLRRLQVLAICHC-LGD 589 (784)
Q Consensus 522 ~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~-----------~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~ 589 (784)
..+++|+.|+++ ..+.+..+..+...|++|++|+++ |+.+++.++..+..++++|++|+++.+ .++
T Consensus 315 ~~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 315 QKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp TTCTTCCEEEEE--GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HhCcCCCEEecc--CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 455556666655 234445555555555666666664 455555555555555666666666433 344
Q ss_pred hHHHHhhcCCCCccEEEccC---CCCCCCh----HHHHHHHhcCCCCcEEEecCCCC-CChHHHHHHHhcCCCCcEEeec
Q 003957 590 LSISSFKLPLPNLRKLKLER---VTPWMTN----NDLVILTQNCSELVELSLVGCTL-LSSDSQLIISQGWPGLISLHLE 661 (784)
Q Consensus 590 ~~~~~l~~~~~~L~~L~L~~---c~~~l~~----~~l~~l~~~~~~L~~L~Ls~c~~-~~~~~~~~~~~~~~~L~~L~L~ 661 (784)
..+..+...+++|++|++.+ | +.+++ .++..+..+|++|+.|++++|.. +++.....+...+++|+.|+|+
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~-n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDRE-ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCC-SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred HHHHHHHhhCCCCcEEEEeecCCC-ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence 45555544455666666652 2 34443 24555555566666666655442 4444445555556666666666
Q ss_pred CCCCCCHHHHHHh-hCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccc
Q 003957 662 ECGDITAYGVTSL-FNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 662 ~c~~i~~~~~~~l-~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~ 716 (784)
+|+ +++.++..+ .++++|+.|++++|.+ ++..+...+..+++|+.|+|++|+
T Consensus 472 ~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 472 YVG-ESDEGLMEFSRGCPNLQKLEMRGCCF--SERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCC-SSHHHHHHHHTCCTTCCEEEEESCCC--BHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCC-CCHHHHHHHHhcCcccCeeeccCCCC--cHHHHHHHHHhcCccCeeECcCCc
Confidence 554 555444443 3556666666666643 434444445556666666666665
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=1.8e-29 Score=293.59 Aligned_cols=407 Identities=18% Similarity=0.215 Sum_probs=265.2
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCC
Q 003957 289 SPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVP 368 (784)
Q Consensus 289 ~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~ 368 (784)
.+++|++|+|++|. +++..+..++..+++|++|++++|..+++.++..+..+|++|++|++++|.++..+...
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~------ 175 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW------ 175 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG------
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH------
Confidence 34677788887774 78888888887799999999999988888888899989999999999998766533322
Q ss_pred ccCcccccccchhhhcCCCccEEEecCCC-CCCHHHHHHHHHhCccccEEEecCCc-Cchhhhhhcc-cCCcCEEEecCC
Q 003957 369 YCNSSALCGKRNFNTLASNLQMLHMACCN-GVDGMYLLELMCQARKLKSLCLSGTQ-LADKALYNFS-GSSLEMLDVSDT 445 (784)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~-~l~~~~l~~l~~~~~~L~~L~Ls~~~-l~~~~~~~l~-~~~L~~L~Ls~~ 445 (784)
++.+...+++|++|++++|. .+++..+..+...+++|+.|++++|. +.+ ....+. .++|++|+++++
T Consensus 176 ---------l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 176 ---------LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp ---------GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBC
T ss_pred ---------HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccc
Confidence 23334578899999999886 56777888777788999999998873 322 111122 578888887665
Q ss_pred c--cchh---hHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEecc-ccCcccHhh
Q 003957 446 M--ISGA---ALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGW-GFSFLSLEV 519 (784)
Q Consensus 446 ~--i~~~---~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~ 519 (784)
. +... .+...+.++++|+.|. +...+... .+...+..+++|++|++++ .++......
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~L~~Ls--~~~~~~~~---------------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~ 308 (594)
T 2p1m_B 246 TAEVRPDVYSGLSVALSGCKELRCLS--GFWDAVPA---------------YLPAVYSVCSRLTTLNLSYATVQSYDLVK 308 (594)
T ss_dssp CCCCCHHHHHHHHHHHHTCTTCCEEE--CCBTCCGG---------------GGGGGHHHHTTCCEEECTTCCCCHHHHHH
T ss_pred cCccchhhHHHHHHHHhcCCCccccc--CCcccchh---------------hHHHHHHhhCCCCEEEccCCCCCHHHHHH
Confidence 2 2221 1223446778888773 11112211 1222233466777777743 344333444
Q ss_pred hhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEe---------eeeccChHHHHHHHhhCCCCcEEEeccc-CCh
Q 003957 520 LKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVL---------YFQVMSDSIIINILESLRRLQVLAICHC-LGD 589 (784)
Q Consensus 520 ~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L---------~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~ 589 (784)
+...+++|++|++++| +++..+..+...|++|++|++ .++.+++.++..+..++++|++|.++.+ .++
T Consensus 309 ~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 309 LLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp HHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred HHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence 4556677777777766 555666666666777777777 3466777777766666777777766544 455
Q ss_pred hHHHHhhcCCCCccEEEcc-----CCCCCCC----hHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEee
Q 003957 590 LSISSFKLPLPNLRKLKLE-----RVTPWMT----NNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHL 660 (784)
Q Consensus 590 ~~~~~l~~~~~~L~~L~L~-----~c~~~l~----~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L 660 (784)
..+..+...+++|++|++. +| +.++ +.++..++.+|++|+.|++++ .+++.....+...+++|+.|+|
T Consensus 387 ~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L 463 (594)
T 2p1m_B 387 AALITIARNRPNMTRFRLCIIEPKAP-DYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSV 463 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSTTCC-CTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHhhCCCcceeEeecccCCCc-ccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeec
Confidence 5566665556777777777 55 5666 566666666777777777765 4555555556555777777777
Q ss_pred cCCCCCCHHHHHHh-hCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEEe
Q 003957 661 EECGDITAYGVTSL-FNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKI 738 (784)
Q Consensus 661 ~~c~~i~~~~~~~l-~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~i 738 (784)
++|. +++.++..+ .++++|+.|++++|.+ ++..+...+..+++|+.|++++|+.. .. ++.. ...++.|+...+
T Consensus 464 ~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~l~~~~~~-~~-~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 464 AFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF--GDKALLANASKLETMRSLWMSSCSVS-FG-ACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp ESCC-SSHHHHHHHHHHCTTCCEEEEESCSC--CHHHHHHTGGGGGGSSEEEEESSCCB-HH-HHHHHHHHCTTEEEEEE
T ss_pred cCCC-CcHHHHHHHHhcCCCcCEEECcCCCC--cHHHHHHHHHhCCCCCEEeeeCCCCC-HH-HHHHHHHhCCCCEEEEe
Confidence 7766 666666665 3677777777777754 54444445566777777777777653 11 1222 234455554444
Q ss_pred c
Q 003957 739 T 739 (784)
Q Consensus 739 s 739 (784)
.
T Consensus 539 ~ 539 (594)
T 2p1m_B 539 D 539 (594)
T ss_dssp C
T ss_pred c
Confidence 4
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=5.2e-30 Score=298.08 Aligned_cols=435 Identities=17% Similarity=0.178 Sum_probs=288.0
Q ss_pred EeCcceEEecCCCCCCChh------------hHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCC
Q 003957 180 SFEAVQEVNICKCHALHLE------------SAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPS 247 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~------------~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~ 247 (784)
++++|++|++++|+...+. .++..+...+++|++|++++| .+++..+..+...+++|++|+|+. |
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~--~ 140 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSS--C 140 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEES--C
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCC--c
Confidence 5667777777776543321 123344456777777777773 467666666666677777777773 3
Q ss_pred CCcCCceeeeecCCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChH---HHHHHHHcCCCCCeEec
Q 003957 248 PVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDA---DLEFISKYCVSLGYINI 324 (784)
Q Consensus 248 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~---~l~~l~~~~~~L~~L~L 324 (784)
..+.+.+...+ ...+++|++|+|++|. +++. .+..+...+++|++|++
T Consensus 141 ~~~~~~~l~~~----------------------------~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l 191 (594)
T 2p1m_B 141 EGFSTDGLAAI----------------------------AATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNI 191 (594)
T ss_dssp EEEEHHHHHHH----------------------------HHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEEC
T ss_pred CCCCHHHHHHH----------------------------HHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEe
Confidence 22322111100 1234677777777664 3322 23333445667777777
Q ss_pred CCCC-ccCHHHHHHHHHhCCCCCEEEeeCC-CCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCC-CCH
Q 003957 325 KGCV-SVTDVCISNLIRRCVKLQSIIVCDT-SFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNG-VDG 401 (784)
Q Consensus 325 ~~c~-~l~~~~l~~l~~~~~~L~~L~Ls~~-~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-l~~ 401 (784)
++|. .+++..+..+..++++|++|++++| .++. + +..+..+++|++|+++.+.. +..
T Consensus 192 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l------------------~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 192 SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--L------------------ATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp TTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--H------------------HHHHHHCTTCSEEECSBCCCCCCH
T ss_pred cccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--H------------------HHHHhcCCcceEcccccccCccch
Confidence 7764 4566666666667777777777766 2222 2 23335667777777766543 222
Q ss_pred HHHH---HHHHhCccccEEE-ecCCcCchhhhhhcc--cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCcccc
Q 003957 402 MYLL---ELMCQARKLKSLC-LSGTQLADKALYNFS--GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQ 475 (784)
Q Consensus 402 ~~l~---~l~~~~~~L~~L~-Ls~~~l~~~~~~~l~--~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~ 475 (784)
..+. ..+.++++|+.|. +.+ .....+..+. +++|++|++++|.+++..+..++..+++|++|++.+| +++
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~ 327 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWD--AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IED 327 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBT--CCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHH
T ss_pred hhHHHHHHHHhcCCCcccccCCcc--cchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCH
Confidence 2222 2236777777772 222 2222333332 5778888888877777777777777888888888776 333
Q ss_pred ccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEe--------cCCCCCChHHHHHhh
Q 003957 476 QESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITV--------GLGGSLGEDALRLLP 547 (784)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L--------~~~~~l~~~~l~~l~ 547 (784)
.++. .+...+++|++|++ .++..+++.++..+.
T Consensus 328 ~~l~---------------------------------------~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 328 AGLE---------------------------------------VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp HHHH---------------------------------------HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred HHHH---------------------------------------HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 2211 12233555666666 345578888888888
Q ss_pred ccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEec-----cc--CC----hhHHHHhhcCCCCccEEEccCCCCCCCh
Q 003957 548 TTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAIC-----HC--LG----DLSISSFKLPLPNLRKLKLERVTPWMTN 616 (784)
Q Consensus 548 ~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls-----~c--~~----~~~~~~l~~~~~~L~~L~L~~c~~~l~~ 616 (784)
..|++|+.|.++++.+++.++..+...+++|+.|+++ +| .+ +..+..+...+++|++|++++ .+++
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~---~l~~ 445 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG---LLTD 445 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS---SCCH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC---cccH
Confidence 7899999998899999999888888889999999999 33 34 556666677789999999966 5888
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhh-CCCCCCEEEcccCCCCCChh
Q 003957 617 NDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLF-NCIALEDLLLRHNGPGIPRD 695 (784)
Q Consensus 617 ~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~-~~~~L~~L~L~~n~~gl~~~ 695 (784)
.++..+...+++|+.|++++|.. ++.....+..+|++|+.|+|++|. +++.++..+. .+++|+.|++++|.+ ++.
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~ 521 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGD-SDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCSV--SFG 521 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCS-SHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSCC--BHH
T ss_pred HHHHHHHHhchhccEeeccCCCC-cHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCCC--CHH
Confidence 88888887899999999999985 555566666779999999999998 5888877654 699999999999975 645
Q ss_pred HHHHHHhcCCCCceecccccc
Q 003957 696 FILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 696 ~~~~~l~~l~~L~~L~L~~c~ 716 (784)
.+......+|.|+...+....
T Consensus 522 ~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 522 ACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHHHhCCCCEEEEecCCC
Confidence 454445778998877776543
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=9.1e-30 Score=295.93 Aligned_cols=416 Identities=17% Similarity=0.171 Sum_probs=318.7
Q ss_pred CCCCccEEecCCCCCCC-------------hHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCC-CCEEEeeCCC
Q 003957 289 SPSKITKLTLEGRSDMC-------------DADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVK-LQSIIVCDTS 354 (784)
Q Consensus 289 ~l~~L~~L~Ls~~~~l~-------------~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~-L~~L~Ls~~~ 354 (784)
.+++|++|++++|..+. ...+..+...+++|++|+|++| .+++..+..+...+++ |++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCC
Confidence 45889999998765432 3356677777899999999987 5777777777766766 9999998884
Q ss_pred -CCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCC--CHHHHHHHHHhCccccEEEecCCcCc---hhh
Q 003957 355 -FGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGV--DGMYLLELMCQARKLKSLCLSGTQLA---DKA 428 (784)
Q Consensus 355 -i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l--~~~~l~~l~~~~~~L~~L~Ls~~~l~---~~~ 428 (784)
++..++..+ ...+++|++|+|++|... ....+..+...+++|+.|+++++.++ ...
T Consensus 150 ~~~~~~l~~~------------------~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 150 GFTTDGLLSI------------------VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp EEEHHHHHHH------------------HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred CcCHHHHHHH------------------HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence 565555433 357889999999988531 11225556678899999999988776 333
Q ss_pred hhhcc--cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEE
Q 003957 429 LYNFS--GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEI 506 (784)
Q Consensus 429 ~~~l~--~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 506 (784)
+..+. +++|++|++++|.+.. +...+..+++|++|.+..+..... ....+..+..+++|+.+
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~--------------~~~~~~~l~~~~~L~~L 275 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIG--------------MPEKYMNLVFPRKLCRL 275 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTT--------------CTTSSSCCCCCTTCCEE
T ss_pred HHHHHhhCCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccc--------------hHHHHHHhhcccccccc
Confidence 33332 6899999999987665 335567889999999875422211 12233456677889999
Q ss_pred EeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecc-
Q 003957 507 VLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICH- 585 (784)
Q Consensus 507 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~- 585 (784)
.+... ........++.+++|++|++++|. +++..+..+...+++|++|+++ +.+++.++..++.++++|++|++++
T Consensus 276 ~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 276 GLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp EETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred Ccccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecC
Confidence 98542 334445567788999999999996 8888886666779999999999 7788889999999999999999994
Q ss_pred ---------c--CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecC---CCCCCh----HHHHH
Q 003957 586 ---------C--LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVG---CTLLSS----DSQLI 647 (784)
Q Consensus 586 ---------c--~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~---c~~~~~----~~~~~ 647 (784)
| .++..+..+...+++|++|++.. +.+++.++..+...+++|++|++++ |+.+++ .....
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~--~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV--SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE--SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeec--CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 4 56777777777789999999954 7899999998888899999999983 445554 34555
Q ss_pred HHhcCCCCcEEeecCCCC-CCHHHHHHhh-CCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcc
Q 003957 648 ISQGWPGLISLHLEECGD-ITAYGVTSLF-NCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIP 725 (784)
Q Consensus 648 ~~~~~~~L~~L~L~~c~~-i~~~~~~~l~-~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~ 725 (784)
+..+|++|+.|++++|.. +++.++..+. .+++|+.|++++|++ ++..++..+.++++|++|+|++|+ +++. .++
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~ 506 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE--SDEGLMEFSRGCPNLQKLEMRGCC-FSER-AIA 506 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS--SHHHHHHHHTCCTTCCEEEEESCC-CBHH-HHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC--CHHHHHHHHhcCcccCeeeccCCC-CcHH-HHH
Confidence 567799999999988763 8888888876 699999999999965 766777888999999999999999 4222 345
Q ss_pred c-ccCCCCCCEEEecCCCCcCccc
Q 003957 726 D-YADRYSLSTVKITKCKSKNRNL 748 (784)
Q Consensus 726 ~-~~~~~~L~~L~is~C~~~~~~~ 748 (784)
. ...+++|++|++++|+....++
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTTCT
T ss_pred HHHHhcCccCeeECcCCcCCHHHH
Confidence 5 6678999999999999766655
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.2e-31 Score=320.35 Aligned_cols=488 Identities=17% Similarity=0.139 Sum_probs=299.3
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+++|++|++++|.-.............+++|++|++++|. +++... . ..+++|++|+|+.+.-...
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~-~~l~~L~~L~Ls~n~l~~~--------- 215 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--V-SRCVNLEFLDVSSNNFSTG--------- 215 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--C-TTCTTCCEEECCSSCCCSC---------
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC--c-ccCCcCCEEECcCCcCCCC---------
Confidence 45667777777664332211111113456677777777643 221111 1 3667777777774421110
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLI 339 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~ 339 (784)
.+. ...+++|++|++++|. ++......+ ..+++|++|++++|........
T Consensus 216 -----------------------~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~---- 265 (768)
T 3rgz_A 216 -----------------------IPF-LGDCSALQHLDISGNK-LSGDFSRAI-STCTELKLLNISSNQFVGPIPP---- 265 (768)
T ss_dssp -----------------------CCB-CTTCCSCCEEECCSSC-CCSCHHHHT-TTCSSCCEEECCSSCCEESCCC----
T ss_pred -----------------------Ccc-cccCCCCCEEECcCCc-CCCcccHHH-hcCCCCCEEECCCCcccCccCc----
Confidence 011 3567888888888875 333323333 4578888888888754322111
Q ss_pred HhCCCCCEEEeeCCCCCHHHHHHh---hccCCccC---cccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCcc
Q 003957 340 RRCVKLQSIIVCDTSFGVYSIRAL---CSEVPYCN---SSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARK 413 (784)
Q Consensus 340 ~~~~~L~~L~Ls~~~i~~~~l~~l---~~~l~~~~---~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~ 413 (784)
..+++|++|++++|.+.......+ +..+..+. +.-...+|..+..+++|++|++++|........ ..+..+++
T Consensus 266 ~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~ 344 (768)
T 3rgz_A 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM-DTLLKMRG 344 (768)
T ss_dssp CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTT
T ss_pred cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH-HHHhcCCC
Confidence 156788888888876542111111 11111110 000123455566677777777777653211111 11256777
Q ss_pred ccEEEecCCcCchhhhhhcc-cC-CcCEEEecCCccchhhHHHHHh-cCCCccEEeccCCCccccccccccccccCCCCc
Q 003957 414 LKSLCLSGTQLADKALYNFS-GS-SLEMLDVSDTMISGAALAYMVH-GNSGLKYLNARGCKNLFQQESNGRGIEFSSYPC 490 (784)
Q Consensus 414 L~~L~Ls~~~l~~~~~~~l~-~~-~L~~L~Ls~~~i~~~~l~~~~~-~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~ 490 (784)
|+.|++++|.++...+..+. .+ +|++|++++|.+++.....+.. .+++|++|++++|.. +
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~---------------- 407 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF-T---------------- 407 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE-E----------------
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc-c----------------
Confidence 77777777766644444443 23 7777777777665433322211 156777777776632 1
Q ss_pred hhhHHhhhcCCCccEEEecc-ccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHH
Q 003957 491 ADLFAELGRTRKLEEIVLGW-GFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIII 569 (784)
Q Consensus 491 ~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~ 569 (784)
+.++..+..+++|++|+++. .+.. .....+..+++|+.|++++|. +.......+. .+++|+.|+++.|.+++. ++
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~-~l~~L~~L~L~~N~l~~~-~p 483 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLSKLRDLKLWLNM-LEGEIPQELM-YVKTLETLILDFNDLTGE-IP 483 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSC-CCSCCCGGGG-GCTTCCEEECCSSCCCSC-CC
T ss_pred cccCHHHhcCCCCCEEECcCCcccC-cccHHHhcCCCCCEEECCCCc-ccCcCCHHHc-CCCCceEEEecCCcccCc-CC
Confidence 12334677889999999954 3332 223346778899999999883 3322222333 378899999988887754 34
Q ss_pred HHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHH-
Q 003957 570 NILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLI- 647 (784)
Q Consensus 570 ~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~- 647 (784)
..+.++++|++|++++|. .+..+..+. .+++|++|++++| .++.. +...+..+++|+.|++++|+.....+...
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N--~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNN--SFSGN-IPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSS--CCEEE-CCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCC--cccCc-CCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 457789999999999993 333333343 4689999999995 45422 22334578899999999987542111000
Q ss_pred -------------------------------------------------------------------HHhcCCCCcEEee
Q 003957 648 -------------------------------------------------------------------ISQGWPGLISLHL 660 (784)
Q Consensus 648 -------------------------------------------------------------------~~~~~~~L~~L~L 660 (784)
....+++|+.|+|
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 0112578999999
Q ss_pred cCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEEec
Q 003957 661 EECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKIT 739 (784)
Q Consensus 661 ~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is 739 (784)
++|. ++...+..++++++|+.|+|++|.+ . ..+++.++.+++|+.|+|++|... + .+|. +.++++|++|+++
T Consensus 640 s~N~-l~g~ip~~l~~l~~L~~L~Ls~N~l--~-g~ip~~l~~L~~L~~LdLs~N~l~-g--~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 640 SYNM-LSGYIPKEIGSMPYLFILNLGHNDI--S-GSIPDEVGDLRGLNILDLSSNKLD-G--RIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CSSC-CBSCCCGGGGGCTTCCEEECCSSCC--C-SCCCGGGGGCTTCCEEECCSSCCE-E--CCCGGGGGCCCCSEEECC
T ss_pred cCCc-ccccCCHHHhccccCCEEeCcCCcc--C-CCCChHHhCCCCCCEEECCCCccc-C--cCChHHhCCCCCCEEECc
Confidence 9987 6555566778899999999999976 5 577888999999999999998876 3 3577 8999999999999
Q ss_pred CCCC
Q 003957 740 KCKS 743 (784)
Q Consensus 740 ~C~~ 743 (784)
+|+.
T Consensus 713 ~N~l 716 (768)
T 3rgz_A 713 NNNL 716 (768)
T ss_dssp SSEE
T ss_pred CCcc
Confidence 9974
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=2.3e-30 Score=306.03 Aligned_cols=490 Identities=15% Similarity=0.121 Sum_probs=236.7
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+++|++|++++|.-..... ..+..+++|++|++++| .++......+ ..+++|++|+++.+.-..++
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~-------- 137 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSD---KTFAFCTNLTELHLMSN-SIQKIKNNPF-VKQKNLITLDLSHNGLSSTK-------- 137 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCT---TTTTTCTTCSEEECCSS-CCCCCCSCTT-TTCTTCCEEECCSSCCSCCC--------
T ss_pred cccCcCEEECCCCccCccCh---hhhccCCCCCEEECCCC-ccCccChhHc-cccCCCCEEECCCCcccccC--------
Confidence 45667777777653222111 01245667777777763 3332221122 36667777777754211110
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHH-HcCCCCCeEecCCCCccCHHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFIS-KYCVSLGYINIKGCVSVTDVCISNL 338 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~-~~~~~L~~L~L~~c~~l~~~~l~~l 338 (784)
+....++++|++|++++|.. +......+. ..+++|++|++++|.. +... +..
T Consensus 138 ------------------------~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~-~~~ 190 (680)
T 1ziw_A 138 ------------------------LGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQI-KEFS-PGC 190 (680)
T ss_dssp ------------------------CCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTCCC-CCBC-TTG
T ss_pred ------------------------chhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCCcc-cccC-hhh
Confidence 11134567777777777642 222222221 1356777777777532 1111 112
Q ss_pred HHhCCCCCEEEeeCCCCCHHHHHHhhccCCcc-----C--cccc-cccchhhhcC--CCccEEEecCCCCCCHHHHHHHH
Q 003957 339 IRRCVKLQSIIVCDTSFGVYSIRALCSEVPYC-----N--SSAL-CGKRNFNTLA--SNLQMLHMACCNGVDGMYLLELM 408 (784)
Q Consensus 339 ~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~-----~--~~~~-~~~~~~~~~l--~~L~~L~L~~c~~l~~~~l~~l~ 408 (784)
+..+++|+.|++.++.+.......++..+... . .... ...|..+..+ ++|+.|++++|.... .. +..+
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~-~~~~ 268 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VG-NDSF 268 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE-EC-TTTT
T ss_pred hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc-cC-cccc
Confidence 34456666666666666554444433211000 0 0000 0011122222 225555555543210 00 0111
Q ss_pred HhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchh----hHH----HHHhcCCCccEEeccCCCcccccccc
Q 003957 409 CQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGA----ALA----YMVHGNSGLKYLNARGCKNLFQQESN 479 (784)
Q Consensus 409 ~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~----~l~----~~~~~l~~L~~L~L~~c~~l~~~~~~ 479 (784)
..+++|+.|++++|.++......|. .++|++|+++++..... .+. ..+..+++|++|+++++. ++...
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~-- 345 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK-- 345 (680)
T ss_dssp TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC--
T ss_pred cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC--
Confidence 3455555555555554444333333 34555555554321110 000 012344555555555442 11111
Q ss_pred ccccccCCCCchhhHHhhhcCCCccEEEecccc---CcccHhhhhh-hcCcccEEEecCCCCCChHHHHHhhccCCCCcE
Q 003957 480 GRGIEFSSYPCADLFAELGRTRKLEEIVLGWGF---SFLSLEVLKP-AIKLLHSITVGLGGSLGEDALRLLPTTCPMLEL 555 (784)
Q Consensus 480 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~---~~~~~~~~~~-~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~ 555 (784)
...+..+++|++|+++.+. ...+...+.. ..++|+.|+++++. +.......+. .+++|+.
T Consensus 346 --------------~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~ 409 (680)
T 1ziw_A 346 --------------SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFS-WLGHLEV 409 (680)
T ss_dssp --------------TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEECTTTTT-TCTTCCE
T ss_pred --------------hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeEChhhhh-CCCCCCE
Confidence 1134556677777774321 1111111111 12457777777662 2221111222 3677888
Q ss_pred EEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChH-HHHHHHhcCCCCcEEE
Q 003957 556 VVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNN-DLVILTQNCSELVELS 633 (784)
Q Consensus 556 L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~-~l~~l~~~~~~L~~L~ 633 (784)
|+++.|.+++......+.++++|++|++++|. ....... ...+++|++|+++++ .++.. .....+.++++|+.|+
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~~L~l~~n--~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSLQRLMLRRV--ALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTT-TTTCTTCCEEECTTS--CCBCTTCSSCTTTTCTTCCEEE
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhh-hhcCcccccchhccc--cccccccCCcccccCCCCCEEE
Confidence 88877666543222345677888888888873 2221222 234577777777774 33321 1222344677777777
Q ss_pred ecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHH--------HHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 634 LVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYG--------VTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 634 Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~--------~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
+++|.+.. .......++++|+.|++++|. ++... ...+.++++|+.|++++|.+ . ......+.+++
T Consensus 487 Ls~N~l~~--i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l--~-~i~~~~~~~l~ 560 (680)
T 1ziw_A 487 LSNNNIAN--INDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGF--D-EIPVEVFKDLF 560 (680)
T ss_dssp CCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCT
T ss_pred CCCCCCCc--CChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCC--C-CCCHHHccccc
Confidence 77776543 111223456777777777765 33221 11245677777777777755 3 22233466777
Q ss_pred CCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCC
Q 003957 706 MLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKS 743 (784)
Q Consensus 706 ~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~ 743 (784)
+|+.|++++|... .+|. +.++++|+.|++++|+.
T Consensus 561 ~L~~L~Ls~N~l~----~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 561 ELKIIDLGLNNLN----TLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECTTSCC
T ss_pred CcceeECCCCCCC----cCCHhHhCCCCCCCEEECCCCcC
Confidence 7777777766554 3444 56677777777777653
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=7e-31 Score=313.85 Aligned_cols=466 Identities=18% Similarity=0.129 Sum_probs=281.3
Q ss_pred CcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHH--HHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 182 EAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLH--KLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 182 ~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~--~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
+.|+.++++.+....... ....+++|++|++++ +.+++.... .+ ..+++|++|+|+++. +...
T Consensus 77 ~~L~~l~~~~~~~~~l~~----~~~~l~~L~~L~Ls~-n~l~~~~~~~~~l-~~l~~L~~L~Ls~n~---l~~~------ 141 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVS----GFKCSASLTSLDLSR-NSLSGPVTTLTSL-GSCSGLKFLNVSSNT---LDFP------ 141 (768)
T ss_dssp TTCCEEECTTSCEEECCC----CCCCCTTCCEEECCS-SEEEEEGGGGGGG-GGCTTCCEEECCSSE---EECC------
T ss_pred CcccccCCcCCCcCCCch----hhccCCCCCEEECCC-CcCCCcCCChHHH-hCCCCCCEEECcCCc---cCCc------
Confidence 555666666543222100 124567888888887 444432222 33 378888888888542 1000
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHH--HHHcCCCCCeEecCCCCccCHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEF--ISKYCVSLGYINIKGCVSVTDVCISN 337 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~--l~~~~~~L~~L~L~~c~~l~~~~l~~ 337 (784)
++ .....++++|++|++++|.. +...... ....+++|++|++++|........
T Consensus 142 ----~~------------------~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-- 196 (768)
T 3rgz_A 142 ----GK------------------VSGGLKLNSLEVLDLSANSI-SGANVVGWVLSDGCGELKHLAISGNKISGDVDV-- 196 (768)
T ss_dssp ----SS------------------CCSCCCCTTCSEEECCSSCC-EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--
T ss_pred ----CC------------------HHHhccCCCCCEEECCCCcc-CCcCChhhhhhccCCCCCEEECCCCcccccCCc--
Confidence 00 00124668888888888753 3222222 134578888888888654322211
Q ss_pred HHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEE
Q 003957 338 LIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSL 417 (784)
Q Consensus 338 l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L 417 (784)
.++++|++|++++|.+... .|. +..+++|++|++++|.... . .+..+..+++|+.|
T Consensus 197 --~~l~~L~~L~Ls~n~l~~~-------------------~~~-l~~l~~L~~L~Ls~n~l~~-~-~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 197 --SRCVNLEFLDVSSNNFSTG-------------------IPF-LGDCSALQHLDISGNKLSG-D-FSRAISTCTELKLL 252 (768)
T ss_dssp --TTCTTCCEEECCSSCCCSC-------------------CCB-CTTCCSCCEEECCSSCCCS-C-HHHHTTTCSSCCEE
T ss_pred --ccCCcCCEEECcCCcCCCC-------------------Ccc-cccCCCCCEEECcCCcCCC-c-ccHHHhcCCCCCEE
Confidence 4678888888888876540 223 4778888888888876532 2 22233778888888
Q ss_pred EecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhh
Q 003957 418 CLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAEL 497 (784)
Q Consensus 418 ~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l 497 (784)
++++|.++...... ..++|++|++++|.+++.....+...+++|++|++++|.. +. .+...+
T Consensus 253 ~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l-~~----------------~~p~~~ 314 (768)
T 3rgz_A 253 NISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-YG----------------AVPPFF 314 (768)
T ss_dssp ECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE-EE----------------CCCGGG
T ss_pred ECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC-CC----------------ccchHH
Confidence 88888766433222 4578888888888766443333333458888888877732 21 122356
Q ss_pred hcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHh-hC
Q 003957 498 GRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILE-SL 575 (784)
Q Consensus 498 ~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~-~l 575 (784)
+.+++|++|+++ +.+...-....+..+++|+.|++++|. +.......+....++|+.|+++.+.+++.....+.. .+
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 677888888884 344322222235667788888888773 211111122221237888888766665432222111 15
Q ss_pred CCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 576 RRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 576 ~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
++|++|++++|. .+.....+ ..+++|++|++++| .++.. +...+..+++|+.|++++|....... .....+++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N--~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~ 467 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFN--YLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKT 467 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSS--EEESC-CCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTT
T ss_pred CCccEEECCCCccccccCHHH-hcCCCCCEEECcCC--cccCc-ccHHHhcCCCCCEEECCCCcccCcCC--HHHcCCCC
Confidence 678888888883 32222223 35578888888884 34321 11224467788888888887654211 12245788
Q ss_pred CcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCC
Q 003957 655 LISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSL 733 (784)
Q Consensus 655 L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L 733 (784)
|+.|++++|. ++...+..+.++++|+.|++++|.+ . ..++..++.+++|+.|++++|... + .+|. +..+++|
T Consensus 468 L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l--~-~~~p~~~~~l~~L~~L~L~~N~l~-~--~~p~~l~~l~~L 540 (768)
T 3rgz_A 468 LETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRL--T-GEIPKWIGRLENLAILKLSNNSFS-G--NIPAELGDCRSL 540 (768)
T ss_dssp CCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCC--C-SCCCGGGGGCTTCCEEECCSSCCE-E--ECCGGGGGCTTC
T ss_pred ceEEEecCCc-ccCcCCHHHhcCCCCCEEEccCCcc--C-CcCChHHhcCCCCCEEECCCCccc-C--cCCHHHcCCCCC
Confidence 8888888876 5444445566788888888888865 4 456667788888888888887765 2 2466 7888888
Q ss_pred CEEEecCCCC
Q 003957 734 STVKITKCKS 743 (784)
Q Consensus 734 ~~L~is~C~~ 743 (784)
+.|++++|+.
T Consensus 541 ~~L~Ls~N~l 550 (768)
T 3rgz_A 541 IWLDLNTNLF 550 (768)
T ss_dssp CEEECCSSEE
T ss_pred CEEECCCCcc
Confidence 8888888864
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=3.9e-30 Score=299.95 Aligned_cols=471 Identities=13% Similarity=0.052 Sum_probs=295.4
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+++|++|++++|.-.... +..+..+++|++|++++ +.++......+ ..+++|++|+++++.-..++
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~l~-------- 121 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIH---EDTFQSQHRLDTLVLTA-NPLIFMAETAL-SGPKALKHLFFIQTGISSID-------- 121 (606)
T ss_dssp TCTTCSEEECTTCCCCEEC---TTTTTTCTTCCEEECTT-CCCSEECTTTT-SSCTTCCEEECTTSCCSCGG--------
T ss_pred cCccceEEECCCCccceeC---hhhccCccccCeeeCCC-CcccccChhhh-cccccccEeeccccCcccCC--------
Confidence 4678888888887432220 01235678888888888 44543322233 37888888888865322111
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLI 339 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~ 339 (784)
+.....+++|++|++++|.. +......+.. +++|++|+++++.. +... +..+
T Consensus 122 ------------------------~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~-l~~L~~L~L~~n~l-~~~~-~~~~ 173 (606)
T 3t6q_A 122 ------------------------FIPLHNQKTLESLYLGSNHI-SSIKLPKGFP-TEKLKVLDFQNNAI-HYLS-KEDM 173 (606)
T ss_dssp ------------------------GSCCTTCTTCCEEECCSSCC-CCCCCCTTCC-CTTCCEEECCSSCC-CEEC-HHHH
T ss_pred ------------------------cchhccCCcccEEECCCCcc-cccCcccccC-CcccCEEEcccCcc-cccC-hhhh
Confidence 01135678888888888753 2211122222 77888888888643 2211 2345
Q ss_pred HhCCCCC--EEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHH----------
Q 003957 340 RRCVKLQ--SIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLEL---------- 407 (784)
Q Consensus 340 ~~~~~L~--~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l---------- 407 (784)
..+++|+ .|++++|.+.. .+.......+|+.|++++|..+. ..+..+
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~--------------------~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~l~~l~~ 232 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAG--------------------IEPGAFDSAVFQSLNFGGTQNLL-VIFKGLKNSTIQSLWL 232 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCE--------------------ECTTTTTTCEEEEEECTTCSCHH-HHHHHTTTCEEEEEEC
T ss_pred hhhcccceeEEecCCCccCc--------------------cChhHhhhccccccccCCchhHH-HHhhhccccchhheec
Confidence 6778888 78888887765 11111234567778877775321 111110
Q ss_pred ---------------HHhC--ccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccC
Q 003957 408 ---------------MCQA--RKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARG 469 (784)
Q Consensus 408 ---------------~~~~--~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~ 469 (784)
...+ .+|+.|++++|.+++.....|. .++|++|++++|.++.. ...+.++++|++|++++
T Consensus 233 ~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l--p~~l~~l~~L~~L~l~~ 310 (606)
T 3t6q_A 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL--PSGLVGLSTLKKLVLSA 310 (606)
T ss_dssp CCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC--CSSCCSCTTCCEEECTT
T ss_pred hhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC--ChhhcccccCCEEECcc
Confidence 0011 1677788888777766655555 57888888888876532 12235678888888877
Q ss_pred CCccccccccccccccCCCCchhhHHhhhcCCCccEEEecc-ccCcccHhhhhhhcCcccEEEecCCCCCChHH--HHHh
Q 003957 470 CKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGW-GFSFLSLEVLKPAIKLLHSITVGLGGSLGEDA--LRLL 546 (784)
Q Consensus 470 c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--l~~l 546 (784)
|. ++.. ....+..+++|++|+++. ..........+..+++|+.|+++++. +.... ...+
T Consensus 311 n~-l~~~----------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 372 (606)
T 3t6q_A 311 NK-FENL----------------CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQL 372 (606)
T ss_dssp CC-CSBG----------------GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTT
T ss_pred CC-cCcC----------------chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhc
Confidence 63 2221 122566678888888843 33322222345677889999998873 22211 1122
Q ss_pred hccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhc
Q 003957 547 PTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQN 625 (784)
Q Consensus 547 ~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~ 625 (784)
..+++|++|+++.+.+++. ....+..+++|++|++++|. ...........+++|++|++++| .++... ...+..
T Consensus 373 -~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~-~~~~~~ 447 (606)
T 3t6q_A 373 -RNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS--LLDISS-EQLFDG 447 (606)
T ss_dssp -TTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC--CCBTTC-TTTTTT
T ss_pred -ccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC--ccCCcC-HHHHhC
Confidence 2378899999987766543 23346678899999998883 22222333445689999999985 454322 223456
Q ss_pred CCCCcEEEecCCCCCChHH-HHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 626 CSELVELSLVGCTLLSSDS-QLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 626 ~~~L~~L~Ls~c~~~~~~~-~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
+++|++|++++|....... ......++++|+.|++++|. ++...+..+.++++|+.|++++|.+ . ...++.+..+
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~~l~~l 523 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNRL--T-SSSIEALSHL 523 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCC--C-GGGGGGGTTC
T ss_pred CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCCcc--C-cCChhHhCcc
Confidence 8899999999987643111 01123568899999999986 6655556677899999999999965 5 5667778889
Q ss_pred CCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCcC
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~ 745 (784)
++| .|++++|... +. .|. +..+++|+.|++++|+-..
T Consensus 524 ~~L-~L~L~~N~l~-~~--~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 524 KGI-YLNLASNHIS-II--LPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CSC-EEECCSSCCC-CC--CGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccc-EEECcCCccc-cc--CHhhcccCCCCCEEeCCCCCccc
Confidence 999 9999988776 21 244 7788899999999988543
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=3.5e-30 Score=300.33 Aligned_cols=470 Identities=15% Similarity=0.068 Sum_probs=314.2
Q ss_pred eCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeecC
Q 003957 181 FEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSS 260 (784)
Q Consensus 181 ~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~~ 260 (784)
-+++++|+++++.-.... ...+..+++|++|++++ +.++......+ ..+++|++|+|+++.-..+.
T Consensus 32 ~~~l~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~--------- 97 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQ---NTTFSRLINLTFLDLTR-CQIYWIHEDTF-QSQHRLDTLVLTANPLIFMA--------- 97 (606)
T ss_dssp CTTCCEEECTTCCCSEEC---TTTSTTCTTCSEEECTT-CCCCEECTTTT-TTCTTCCEEECTTCCCSEEC---------
T ss_pred CCcCcEEEccCCccCcCC---hhHhccCccceEEECCC-CccceeChhhc-cCccccCeeeCCCCcccccC---------
Confidence 357899999987543221 11236789999999999 45554333333 38999999999965322111
Q ss_pred CccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHH
Q 003957 261 SALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIR 340 (784)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~ 340 (784)
+.....+++|++|++++|.. +......+ ..+++|++|++++|.. +...++.+.
T Consensus 98 -----------------------~~~~~~l~~L~~L~L~~n~i-~~l~~~~~-~~l~~L~~L~L~~n~l-~~~~~~~~~- 150 (606)
T 3t6q_A 98 -----------------------ETALSGPKALKHLFFIQTGI-SSIDFIPL-HNQKTLESLYLGSNHI-SSIKLPKGF- 150 (606)
T ss_dssp -----------------------TTTTSSCTTCCEEECTTSCC-SCGGGSCC-TTCTTCCEEECCSSCC-CCCCCCTTC-
T ss_pred -----------------------hhhhcccccccEeeccccCc-ccCCcchh-ccCCcccEEECCCCcc-cccCccccc-
Confidence 12246779999999999853 33211122 4588999999998643 222222222
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCcc--EEEecCCCCCCHHHHHHHHHhCccccEEE
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQ--MLHMACCNGVDGMYLLELMCQARKLKSLC 418 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~--~L~L~~c~~l~~~~l~~l~~~~~~L~~L~ 418 (784)
.+++|+.|++++|.+.... +..+..+++|+ .|++++|..... .. . .....+|+.|+
T Consensus 151 ~l~~L~~L~L~~n~l~~~~-------------------~~~~~~l~~L~~l~L~l~~n~l~~~-~~-~-~~~~~~L~~L~ 208 (606)
T 3t6q_A 151 PTEKLKVLDFQNNAIHYLS-------------------KEDMSSLQQATNLSLNLNGNDIAGI-EP-G-AFDSAVFQSLN 208 (606)
T ss_dssp CCTTCCEEECCSSCCCEEC-------------------HHHHHTTTTCCSEEEECTTCCCCEE-CT-T-TTTTCEEEEEE
T ss_pred CCcccCEEEcccCcccccC-------------------hhhhhhhcccceeEEecCCCccCcc-Ch-h-Hhhhccccccc
Confidence 3789999999999887522 22346788888 888988865221 11 1 12446788888
Q ss_pred ecCCcCc-----------------------------hhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccC
Q 003957 419 LSGTQLA-----------------------------DKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARG 469 (784)
Q Consensus 419 Ls~~~l~-----------------------------~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~ 469 (784)
++++... ...+..+...+|+.|++++|.++...... +..+++|++|++++
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLTA 287 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT-TTTCTTCSEEECTT
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH-hccccCCCEEeccC
Confidence 8775311 11112222237899999999876654332 36789999999988
Q ss_pred CCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhc
Q 003957 470 CKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPT 548 (784)
Q Consensus 470 c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~ 548 (784)
+. ++. ++..+..+++|++|+++ +.+..... ..+..+++|+.|+++++..........+.
T Consensus 288 n~-l~~-----------------lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~- 347 (606)
T 3t6q_A 288 TH-LSE-----------------LPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLE- 347 (606)
T ss_dssp SC-CSC-----------------CCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTT-
T ss_pred Cc-cCC-----------------CChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcccccchhhhh-
Confidence 73 332 12246678899999995 44544333 34677899999999998432111111223
Q ss_pred cCCCCcEEEeeeeccChHHH-HHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCC
Q 003957 549 TCPMLELVVLYFQVMSDSII-INILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCS 627 (784)
Q Consensus 549 ~~~~L~~L~L~~~~i~~~~l-~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~ 627 (784)
.+++|++|+++.+.++.... ...+.++++|++|++++|............+++|++|+++++ .++.......+.+++
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT--RLKVKDAQSPFQNLH 425 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC--CEECCTTCCTTTTCT
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC--cCCCcccchhhhCcc
Confidence 47899999998888776421 234678899999999999422222223345699999999995 454333333356789
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHH---HHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGV---TSLFNCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~---~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
+|++|++++|...... .....++++|+.|++++|. ++...+ ..+..+++|+.|++++|.+ . ...+..+..+
T Consensus 426 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l--~-~~~~~~~~~l 499 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDL--S-SIDQHAFTSL 499 (606)
T ss_dssp TCCEEECTTCCCBTTC--TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCC--C-EECTTTTTTC
T ss_pred cCCEEECCCCccCCcC--HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCcc--C-ccChhhhccc
Confidence 9999999999875421 2223568999999999987 543222 3456899999999999976 4 4556778899
Q ss_pred CCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCcCc
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~~ 746 (784)
++|+.|++++|... + ..|. +.++++| .|++++|.....
T Consensus 500 ~~L~~L~Ls~N~l~-~--~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 500 KMMNHVDLSHNRLT-S--SSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp TTCCEEECCSSCCC-G--GGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred cCCCEEECCCCccC-c--CChhHhCccccc-EEECcCCccccc
Confidence 99999999998766 2 2344 8999999 999999986544
No 10
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.5e-26 Score=258.39 Aligned_cols=164 Identities=16% Similarity=0.303 Sum_probs=86.5
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHcCC----CCCeEecCCCCccCHH---HHHHHHHhCCCCCEEEeeCCCCCHHHHHH
Q 003957 290 PSKITKLTLEGRSDMCDADLEFISKYCV----SLGYINIKGCVSVTDV---CISNLIRRCVKLQSIIVCDTSFGVYSIRA 362 (784)
Q Consensus 290 l~~L~~L~Ls~~~~l~~~~l~~l~~~~~----~L~~L~L~~c~~l~~~---~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~ 362 (784)
+++|++|++++|. +++.+...+...++ +|++|++++|. +++. .+...+..+++|++|++++|.++..++..
T Consensus 55 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 132 (461)
T 1z7x_W 55 NPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132 (461)
T ss_dssp CTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred CCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence 3556666666553 45555555555555 56666666653 3332 23334445666666666666666655554
Q ss_pred hhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHH---HHHHHHhCccccEEEecCCcCchhhhhhcc------
Q 003957 363 LCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMY---LLELMCQARKLKSLCLSGTQLADKALYNFS------ 433 (784)
Q Consensus 363 l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~---l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~------ 433 (784)
++.. +....++|++|++++|.. ++.. +......+++|+.|++++|.+++.+...+.
T Consensus 133 l~~~--------------l~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 197 (461)
T 1z7x_W 133 LCEG--------------LLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197 (461)
T ss_dssp HHHH--------------HTSTTCCCCEEECTTSCC-BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHS
T ss_pred HHHH--------------HhcCCCcceEEECCCCCC-CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcC
Confidence 4211 112244566666666643 2222 222334566666666666666555544432
Q ss_pred cCCcCEEEecCCccchhh---HHHHHhcCCCccEEeccCC
Q 003957 434 GSSLEMLDVSDTMISGAA---LAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 434 ~~~L~~L~Ls~~~i~~~~---l~~~~~~l~~L~~L~L~~c 470 (784)
.++|++|++++|.++..+ +...+..+++|++|++++|
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 236666666666555543 2233345566666666555
No 11
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=3.5e-26 Score=257.13 Aligned_cols=365 Identities=19% Similarity=0.211 Sum_probs=211.4
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHH---HHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDV---CISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~---~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
++|++|+++++. +++.....+...+++|++|++++|. +++. .+...+..+++|++|++++|.+++.++..++..+
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 678999998774 7777777766778899999999875 5554 3445566789999999999998887776653222
Q ss_pred CccCcccccccchhhhcCCCccEEEecCCCCCCHH---HHHHHHHhCccccEEEecCCcCchhhhhhcc------cCCcC
Q 003957 368 PYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGM---YLLELMCQARKLKSLCLSGTQLADKALYNFS------GSSLE 438 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~---~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~------~~~L~ 438 (784)
. ...++|++|++++|.. ++. .+......+++|+.|++++|.+++.+...+. .++|+
T Consensus 81 ~--------------~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 145 (461)
T 1z7x_W 81 Q--------------TPSCKIQKLSLQNCCL-TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145 (461)
T ss_dssp C--------------STTCCCCEEECTTSCC-BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred h--------------hCCCceeEEEccCCCC-CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence 0 1122699999998864 432 3344446788999999999888877665544 24799
Q ss_pred EEEecCCccchhhH---HHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhh-cCCCccEEEec-cccC
Q 003957 439 MLDVSDTMISGAAL---AYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELG-RTRKLEEIVLG-WGFS 513 (784)
Q Consensus 439 ~L~Ls~~~i~~~~l---~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~L~-~~~~ 513 (784)
+|++++|.+++.+. ...+..+++|++|+++++. +++.+.. .+...+. ..++|++|+++ +.++
T Consensus 146 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~------------~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVR------------VLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHH------------HHHHHHHHSCCCCCEEECTTSCCB
T ss_pred EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHH------------HHHHHHhcCCCCceEEEccCCCCc
Confidence 99999988877553 3445667899999988874 4443321 2222332 24567777773 3333
Q ss_pred ccc---HhhhhhhcCcccEEEecCCCCCChHHHHHhhc----cCCCCcEEEeeeeccChHH---HHHHHhhCCCCcEEEe
Q 003957 514 FLS---LEVLKPAIKLLHSITVGLGGSLGEDALRLLPT----TCPMLELVVLYFQVMSDSI---IINILESLRRLQVLAI 583 (784)
Q Consensus 514 ~~~---~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~----~~~~L~~L~L~~~~i~~~~---l~~~~~~l~~L~~L~L 583 (784)
... ....+..+++|++|+++++ .+++.++..++. .+++|++|+++.+.+++.+ +...+..+++|++|++
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence 322 2223334556666666665 444444433322 2456666666555565554 2333444556666666
Q ss_pred ccc-CChhHHHHh----hcCCCCccEEEccCCCCCCChHH---HHHHHhcCCCCcEEEecCCCCCChHHHHHHHh----c
Q 003957 584 CHC-LGDLSISSF----KLPLPNLRKLKLERVTPWMTNND---LVILTQNCSELVELSLVGCTLLSSDSQLIISQ----G 651 (784)
Q Consensus 584 s~c-~~~~~~~~l----~~~~~~L~~L~L~~c~~~l~~~~---l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~----~ 651 (784)
++| +++.....+ ....++|++|++++| .+++.+ +......+++|++|++++|.+.+ .....+.. .
T Consensus 292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~ 368 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSC--SFTAACCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQP 368 (461)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS--CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTST
T ss_pred CCCCCchHHHHHHHHHhccCCccceeeEcCCC--CCchHHHHHHHHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCC
Confidence 665 222222222 122245666666664 344443 22333345566666666654322 22222221 1
Q ss_pred CCCCcEEeecCCCCCCHHHHHH----hhCCCCCCEEEcccCCC
Q 003957 652 WPGLISLHLEECGDITAYGVTS----LFNCIALEDLLLRHNGP 690 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~----l~~~~~L~~L~L~~n~~ 690 (784)
.++|+.|++++|. +++.++.. +..+++|++|++++|.+
T Consensus 369 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 3456666665554 55433222 23455566666665543
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=3.3e-28 Score=287.55 Aligned_cols=486 Identities=16% Similarity=0.101 Sum_probs=284.0
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+++|++|+++++.-.... ......+++|++|++++ +.++......+ ..+++|++|+|+.+.-..++.
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~-n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~------- 114 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLE---PELCQKLPMLKVLNLQH-NELSQLSDKTF-AFCTNLTELHLMSNSIQKIKN------- 114 (680)
T ss_dssp GGTTCSEEECCSSCCCCCC---TTHHHHCTTCCEEECCS-SCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCS-------
T ss_pred CCCcCcEEECCCCccCccC---HHHHhcccCcCEEECCC-CccCccChhhh-ccCCCCCEEECCCCccCccCh-------
Confidence 4677888888876432221 11235678888888887 44443221123 377888888888543222211
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHH-
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNL- 338 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l- 338 (784)
.....+++|++|++++|.. +......+ ..+++|++|++++|.. +......+
T Consensus 115 -------------------------~~~~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l-~~~~~~~~~ 166 (680)
T 1ziw_A 115 -------------------------NPFVKQKNLITLDLSHNGL-SSTKLGTQ-VQLENLQELLLSNNKI-QALKSEELD 166 (680)
T ss_dssp -------------------------CTTTTCTTCCEEECCSSCC-SCCCCCSS-SCCTTCCEEECCSSCC-CCBCHHHHG
T ss_pred -------------------------hHccccCCCCEEECCCCcc-cccCchhh-cccccCCEEEccCCcc-cccCHHHhh
Confidence 1245678999999998853 22111112 3578899999988643 22111122
Q ss_pred HHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHH--HhCccccE
Q 003957 339 IRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELM--CQARKLKS 416 (784)
Q Consensus 339 ~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~--~~~~~L~~ 416 (784)
...+++|+.|++++|.+... .|..+..+++|+.|++.++.. .......+. ...++|+.
T Consensus 167 ~~~~~~L~~L~L~~n~l~~~-------------------~~~~~~~l~~L~~L~l~~~~l-~~~~~~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIKEF-------------------SPGCFHAIGRLFGLFLNNVQL-GPSLTEKLCLELANTSIRN 226 (680)
T ss_dssp GGTTCEESEEECTTCCCCCB-------------------CTTGGGGSSEECEEECTTCCC-HHHHHHHHHHHHTTSCCCE
T ss_pred ccccccccEEECCCCccccc-------------------Chhhhhhhhhhhhhhcccccc-ChhhHHHHHHHhhhccccE
Confidence 12468899999998877542 122334556666666665543 222221111 13356666
Q ss_pred EEecCCcCchhhhhhcc---cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCc---
Q 003957 417 LCLSGTQLADKALYNFS---GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPC--- 490 (784)
Q Consensus 417 L~Ls~~~l~~~~~~~l~---~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~--- 490 (784)
|++++|.+++.....|. .++|++|++++|.++...... +..+++|++|+++++. +........ ..++.+..
T Consensus 227 L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L 303 (680)
T 1ziw_A 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNN-IQHLFSHSL-HGLFNVRYLNL 303 (680)
T ss_dssp EECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSCC-BSEECTTTT-TTCTTCCEEEC
T ss_pred EEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc-ccCcccccEeeCCCCc-cCccChhhh-cCCCCccEEec
Confidence 66666655544443333 234666666666554332222 2455666666665542 111100000 00000000
Q ss_pred -----------hhhH----HhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCC----CChHHHHHhhccC
Q 003957 491 -----------ADLF----AELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGS----LGEDALRLLPTTC 550 (784)
Q Consensus 491 -----------~~~~----~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~----l~~~~l~~l~~~~ 550 (784)
..+. ..+..+++|++|+++ +.+.... ...+..+++|+.|+++++.. +....+..+ ..
T Consensus 304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~--~~ 380 (680)
T 1ziw_A 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AH 380 (680)
T ss_dssp TTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC-TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG--TT
T ss_pred cchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC-hhHhccccCCcEEECCCCchhhhhcchhhhccc--cc
Confidence 0000 145567788888884 4444332 23456678888888887631 222222111 12
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++|+.|+++.+.++... +..+.++++|+.|++++|. .+.........+++|++|++++| .++.... ..+..+++|
T Consensus 381 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~-~~~~~~~~L 456 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN--KYLQLTR-NSFALVPSL 456 (680)
T ss_dssp SCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC--SEEECCT-TTTTTCTTC
T ss_pred CcCceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC--CcceeCh-hhhhcCccc
Confidence 57888888777776542 2346678899999999883 22222233446689999999995 4432211 123468899
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHH---------HH
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFIL---------DA 700 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~---------~~ 700 (784)
+.|++++|.............++++|+.|++++|. ++......+.++++|++|++++|.+ ..+. ..
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNL----ARLWKHANPGGPIYF 531 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC----GGGGSTTSTTSCCCT
T ss_pred ccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCc----cccchhhccCCcchh
Confidence 99999998764321112223568999999999987 6655455567899999999999976 3321 12
Q ss_pred HhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCc
Q 003957 701 ASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 701 l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~ 744 (784)
+.++++|+.|++++|... .+|. +.++++|+.|++++|...
T Consensus 532 ~~~l~~L~~L~L~~N~l~----~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFD----EIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp TTTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCCCC----CCCHHHcccccCcceeECCCCCCC
Confidence 678899999999998766 4565 899999999999999754
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=4.1e-28 Score=282.77 Aligned_cols=463 Identities=13% Similarity=0.036 Sum_probs=261.8
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+++|++|++++|.-.... ...+..+++|++|++++ +.++......+ ..+++|++|+|+++.-..++.
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~---~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~------- 121 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIE---DKAWHGLHHLSNLILTG-NPIQSFSPGSF-SGLTSLENLVAVETKLASLES------- 121 (606)
T ss_dssp TCTTCCEEECTTCCCCEEC---TTTTTTCTTCCEEECTT-CCCCCCCTTSS-TTCTTCCEEECTTSCCCCSSS-------
T ss_pred CCccCcEEeCCCCcccccC---HHHhhchhhcCEeECCC-CcccccChhhc-CCcccCCEEEccCCccccccc-------
Confidence 3566667777665322110 01124566677777766 33443222222 366667777776443222211
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCcc--CHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSV--TDVCISN 337 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l--~~~~l~~ 337 (784)
....++++|++|++++|.. +...++.....+++|++|++++|... ....+..
T Consensus 122 -------------------------~~~~~l~~L~~L~L~~n~l-~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 122 -------------------------FPIGQLITLKKLNVAHNFI-HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp -------------------------SCCTTCTTCCEEECCSSCC-CCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred -------------------------cccCCCCCCCEEeCCCCcc-cceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 1134566777777776642 21111222234667777777665321 1111111
Q ss_pred HHHhCCC-CCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccE
Q 003957 338 LIRRCVK-LQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKS 416 (784)
Q Consensus 338 l~~~~~~-L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~ 416 (784)
+ .+++. +.+|++++|.+.. ++.......+|+.|++++|.. +....+.....++.|+.
T Consensus 176 l-~~L~~~l~~L~l~~n~l~~--------------------~~~~~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~ 233 (606)
T 3vq2_A 176 L-RENPQVNLSLDMSLNPIDF--------------------IQDQAFQGIKLHELTLRGNFN-SSNIMKTCLQNLAGLHV 233 (606)
T ss_dssp H-HHCTTCCCEEECTTCCCCE--------------------ECTTTTTTCEEEEEEEESCCS-CHHHHHHHHHTTTTCEE
T ss_pred h-hccccccceeeccCCCcce--------------------eCcccccCceeeeeeccCCcc-chhHHHHHhcccccccc
Confidence 1 12222 4467777666553 222223344899999998765 33445555578888887
Q ss_pred EEecCC---------------------------------cCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCc
Q 003957 417 LCLSGT---------------------------------QLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGL 462 (784)
Q Consensus 417 L~Ls~~---------------------------------~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L 462 (784)
+.+... .+.+.... +. .++|+.|+++++.+.... .+..+++|
T Consensus 234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L 309 (606)
T 3vq2_A 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE---DVPKHFKW 309 (606)
T ss_dssp EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC---CCCTTCCC
T ss_pred ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh---hccccccC
Confidence 776432 22222222 22 356777777776554432 23456677
Q ss_pred cEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHH
Q 003957 463 KYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDA 542 (784)
Q Consensus 463 ~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 542 (784)
++|++.+|.. .... .+ .+++|++|+++.+...... .+..+++|+.|+++++. ++...
T Consensus 310 ~~L~l~~n~l-~~lp------------------~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~~~ 366 (606)
T 3vq2_A 310 QSLSIIRCQL-KQFP------------------TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA-LSFSG 366 (606)
T ss_dssp SEEEEESCCC-SSCC------------------CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC-EEEEE
T ss_pred CEEEcccccC-cccc------------------cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCc-cCCCc
Confidence 7777766633 2111 22 5677888888433111111 23456778888888773 22110
Q ss_pred --HHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHH
Q 003957 543 --LRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDL 619 (784)
Q Consensus 543 --l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l 619 (784)
...+ ..+++|++|+++.+.++.. +..+.++++|+.|++++|. ...........+++|++|++++| .++...
T Consensus 367 ~~~~~~-~~~~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~- 440 (606)
T 3vq2_A 367 CCSYSD-LGTNSLRHLDLSFNGAIIM--SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT--NTKIDF- 440 (606)
T ss_dssp ECCHHH-HCCSCCCEEECCSCSEEEE--CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS--CCEECC-
T ss_pred chhhhh-ccCCcccEeECCCCccccc--hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC--CCCccc-
Confidence 1112 2367788888876665542 2345667888888888872 22222123345688888888885 344321
Q ss_pred HHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHH
Q 003957 620 VILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILD 699 (784)
Q Consensus 620 ~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~ 699 (784)
...+.++++|++|++++|...... ......++++|+.|++++|. ++...+..+.++++|+.|++++|.+ . ...+.
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~ 515 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNT-LSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNL--L-FLDSS 515 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCC--S-CEEGG
T ss_pred hhhhcCCCCCCEEECCCCcCCCcc-hHHhhccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCCcC--C-CcCHH
Confidence 123456778888888888654311 11122457888888888876 6555555667788888888888865 4 44466
Q ss_pred HHhcCCCCceeccccccccCCCCCccc-ccCCC-CCCEEEecCCCCc
Q 003957 700 AASKMPMLRLVSLDLCDASDGNFEIPD-YADRY-SLSTVKITKCKSK 744 (784)
Q Consensus 700 ~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~-~L~~L~is~C~~~ 744 (784)
.+..+++|+.|++++|+.. .+|. +..++ +|++|++++|+-.
T Consensus 516 ~~~~l~~L~~L~l~~N~l~----~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIE----TSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp GTTTCTTCCEEECTTSCCC----CEESCGGGSCTTCCEEECCSCCCC
T ss_pred HccCCCcCCEEECCCCcCc----ccCHhHhhhcccCcEEEccCCCcc
Confidence 7788888888888888755 4676 66765 5888888887754
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=3.1e-27 Score=271.99 Aligned_cols=476 Identities=13% Similarity=0.092 Sum_probs=319.2
Q ss_pred cCeEEeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCcee
Q 003957 176 LPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVS 255 (784)
Q Consensus 176 l~~~~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~ 255 (784)
+|.--+++|++|+++++.-..... .....+++|++|++++ +.++......+. .+++|++|+|+++.-..++.
T Consensus 20 ip~~~~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~--- 91 (549)
T 2z81_A 20 IPSGLTAAMKSLDLSFNKITYIGH---GDLRACANLQVLILKS-SRINTIEGDAFY-SLGSLEHLDLSDNHLSSLSS--- 91 (549)
T ss_dssp CCSCCCTTCCEEECCSSCCCEECS---STTSSCTTCCEEECTT-SCCCEECTTTTT-TCTTCCEEECTTSCCCSCCH---
T ss_pred ccccCCCCccEEECcCCccCccCh---hhhhcCCcccEEECCC-CCcCccChhhcc-ccccCCEEECCCCccCccCH---
Confidence 444345789999999985322100 1136789999999999 566543333343 88999999999654322211
Q ss_pred eeecCCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHH
Q 003957 256 VVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCI 335 (784)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l 335 (784)
.....+++|++|++++|.. +..........+++|++|++++|..++...
T Consensus 92 -----------------------------~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~- 140 (549)
T 2z81_A 92 -----------------------------SWFGPLSSLKYLNLMGNPY-QTLGVTSLFPNLTNLQTLRIGNVETFSEIR- 140 (549)
T ss_dssp -----------------------------HHHTTCTTCCEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEEC-
T ss_pred -----------------------------HHhccCCCCcEEECCCCcc-cccchhhhhhccCCccEEECCCCccccccC-
Confidence 0125679999999999853 321111223458899999999876443321
Q ss_pred HHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCcccc
Q 003957 336 SNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLK 415 (784)
Q Consensus 336 ~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~ 415 (784)
...+.++++|+.|++++|.+... .|..+..+++|++|+++++..-. ....+...+++|+
T Consensus 141 ~~~~~~l~~L~~L~L~~n~l~~~-------------------~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~ 199 (549)
T 2z81_A 141 RIDFAGLTSLNELEIKALSLRNY-------------------QSQSLKSIRDIHHLTLHLSESAF--LLEIFADILSSVR 199 (549)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEE-------------------CTTTTTTCSEEEEEEEECSBSTT--HHHHHHHSTTTBS
T ss_pred HhhhhcccccCeeeccCCccccc-------------------ChhhhhccccCceEecccCcccc--cchhhHhhccccc
Confidence 12245789999999999987651 33445778999999999887532 2222346799999
Q ss_pred EEEecCCcCchhhhhh--cc--cCCcCEEEecCCccchhhHHHHH---hcCCCccEEeccCCCccccccccccccccCCC
Q 003957 416 SLCLSGTQLADKALYN--FS--GSSLEMLDVSDTMISGAALAYMV---HGNSGLKYLNARGCKNLFQQESNGRGIEFSSY 488 (784)
Q Consensus 416 ~L~Ls~~~l~~~~~~~--l~--~~~L~~L~Ls~~~i~~~~l~~~~---~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 488 (784)
.|++++|.++...... +. .++|+.|+++++.+++.....+. ..+++|+.+++.+|..-....+.
T Consensus 200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~--------- 270 (549)
T 2z81_A 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN--------- 270 (549)
T ss_dssp EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC---------
T ss_pred EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc---------
Confidence 9999999887653221 11 57999999999988876665543 56789999999988432111110
Q ss_pred CchhhHHhhhcCCCccEEEec-cccCcc----cHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeecc
Q 003957 489 PCADLFAELGRTRKLEEIVLG-WGFSFL----SLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVM 563 (784)
Q Consensus 489 ~~~~~~~~l~~l~~L~~L~L~-~~~~~~----~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i 563 (784)
......+..+.+|+.+.+. ...... ..........+|+.|+++++. +.... ..+...+++|+.|+++.|.+
T Consensus 271 --~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip-~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 271 --PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVP-CSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp --CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCC-HHHHHHCTTCCEEECCSSCC
T ss_pred --ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCC-HHHHhcCccccEEEccCCcc
Confidence 0011234556788888883 322221 112223446789999999873 33211 12223478899999999999
Q ss_pred ChHHHHH--HHhhCCCCcEEEeccc-CChhHH-HHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCC
Q 003957 564 SDSIIIN--ILESLRRLQVLAICHC-LGDLSI-SSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTL 639 (784)
Q Consensus 564 ~~~~l~~--~~~~l~~L~~L~Ls~c-~~~~~~-~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ 639 (784)
++..... .+..+++|+.|++++| +..... ......+++|++|++++| .++. +...+..+++|++|++++|.+
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~--lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN--TFHP--MPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC--CCCC--CCSCCCCCTTCCEEECTTSCC
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC--CCcc--CChhhcccccccEEECCCCCc
Confidence 8764432 2567899999999999 333322 234556799999999995 5652 332345678999999999986
Q ss_pred CChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccC
Q 003957 640 LSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASD 719 (784)
Q Consensus 640 ~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~ 719 (784)
..-. ..-.++|+.|++++|. ++.. ..++++|++|++++|.+ ..++. ...+++|+.|++++|...
T Consensus 423 ~~l~-----~~~~~~L~~L~Ls~N~-l~~~----~~~l~~L~~L~Ls~N~l----~~ip~-~~~l~~L~~L~Ls~N~l~- 486 (549)
T 2z81_A 423 RVVK-----TCIPQTLEVLDVSNNN-LDSF----SLFLPRLQELYISRNKL----KTLPD-ASLFPVLLVMKISRNQLK- 486 (549)
T ss_dssp SCCC-----TTSCTTCSEEECCSSC-CSCC----CCCCTTCCEEECCSSCC----SSCCC-GGGCTTCCEEECCSSCCC-
T ss_pred cccc-----chhcCCceEEECCCCC-hhhh----cccCChhcEEECCCCcc----CcCCC-cccCccCCEEecCCCccC-
Confidence 5310 0113689999999987 5432 24799999999999987 44444 457899999999998766
Q ss_pred CCCCccc-ccCCCCCCEEEecCCCCcCc
Q 003957 720 GNFEIPD-YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 720 ~~~~l~~-~~~~~~L~~L~is~C~~~~~ 746 (784)
+. .|. +..+++|+.|++++|+-...
T Consensus 487 ~~--~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 487 SV--PDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CC--CTTGGGGCTTCCEEECCSSCBCCC
T ss_pred Cc--CHHHHhcCcccCEEEecCCCccCC
Confidence 22 234 88999999999999986443
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=6.2e-28 Score=281.32 Aligned_cols=228 Identities=14% Similarity=0.042 Sum_probs=150.4
Q ss_pred hhcCCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH-HHHHHhh
Q 003957 497 LGRTRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI-IINILES 574 (784)
Q Consensus 497 l~~l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-l~~~~~~ 574 (784)
+..+++|++|++ ++.+..++ .+ .+++|+.|+++++..+... .+. .+++|+.|+++.+.++..+ ....+..
T Consensus 303 l~~~~~L~~L~l~~n~l~~lp--~~--~l~~L~~L~l~~n~~~~~~---~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~ 374 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQLKQFP--TL--DLPFLKSLTLTMNKGSISF---KKV-ALPSLSYLDLSRNALSFSGCCSYSDLG 374 (606)
T ss_dssp CCTTCCCSEEEEESCCCSSCC--CC--CCSSCCEEEEESCSSCEEC---CCC-CCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred ccccccCCEEEcccccCcccc--cC--CCCccceeeccCCcCccch---hhc-cCCCCCEEECcCCccCCCcchhhhhcc
Confidence 444556666666 33333222 22 5667777777776443322 222 3678888888776665432 1344677
Q ss_pred CCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 575 LRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 575 l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
+++|++|++++|...... .....+++|++|+++++ .++.......+.++++|++|++++|...... .....++++
T Consensus 375 ~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~ 449 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHS--TLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--DGIFLGLTS 449 (606)
T ss_dssp CSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTS--EEESTTTTTTTTTCTTCCEEECTTSCCEECC--TTTTTTCTT
T ss_pred CCcccEeECCCCccccch-hhccCCCCCCeeECCCC--ccCCccChhhhhccccCCEEECcCCCCCccc--hhhhcCCCC
Confidence 888888888888311111 23345688999999885 4443322123457889999999998865421 112346889
Q ss_pred CcEEeecCCCCCCHH-HHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCC
Q 003957 655 LISLHLEECGDITAY-GVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYS 732 (784)
Q Consensus 655 L~~L~L~~c~~i~~~-~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~ 732 (784)
|+.|++++|. ++.. .+..+.++++|+.|++++|.+ . ...+..+..+++|+.|++++|... + ..|. +.++++
T Consensus 450 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l--~-~~~~~~~~~l~~L~~L~Ls~N~l~-~--~~~~~~~~l~~ 522 (606)
T 3vq2_A 450 LNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQL--E-QISWGVFDTLHRLQLLNMSHNNLL-F--LDSSHYNQLYS 522 (606)
T ss_dssp CCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCC--C-EECTTTTTTCTTCCEEECCSSCCS-C--EEGGGTTTCTT
T ss_pred CCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCcC--C-ccChhhhcccccCCEEECCCCcCC-C--cCHHHccCCCc
Confidence 9999999886 5432 344456889999999999965 5 455667888999999999998766 2 1255 888999
Q ss_pred CCEEEecCCCCc
Q 003957 733 LSTVKITKCKSK 744 (784)
Q Consensus 733 L~~L~is~C~~~ 744 (784)
|++|++++|+..
T Consensus 523 L~~L~l~~N~l~ 534 (606)
T 3vq2_A 523 LSTLDCSFNRIE 534 (606)
T ss_dssp CCEEECTTSCCC
T ss_pred CCEEECCCCcCc
Confidence 999999999754
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.8e-27 Score=273.65 Aligned_cols=224 Identities=14% Similarity=0.046 Sum_probs=145.1
Q ss_pred CccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH-HHHHHhhCCCCc
Q 003957 502 KLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI-IINILESLRRLQ 579 (784)
Q Consensus 502 ~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-l~~~~~~l~~L~ 579 (784)
+|++|++ ++.+..++. ..+++|+.|+++++....... ...+++|+.|+++.+.++..+ ....+.++++|+
T Consensus 305 ~L~~L~l~~n~~~~l~~----~~l~~L~~L~l~~n~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 305 GWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp CCSEEEEESCBCSSCCB----CBCSSCCEEEEESCBSCCBCC----CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred CccEEeeccCcccccCc----ccccccCEEeCcCCccccccc----cccCCCCCEEeCcCCccCccccccccccccCccC
Confidence 5666666 333332221 245667777777763221110 034788888888877766432 123466788899
Q ss_pred EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEe
Q 003957 580 VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLH 659 (784)
Q Consensus 580 ~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~ 659 (784)
+|++++|........ ...+++|++|++++| .++.......+.++++|++|++++|...... .....++++|+.|+
T Consensus 377 ~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 377 YLDLSFNGVITMSSN-FLGLEQLEHLDFQHS--NLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLK 451 (570)
T ss_dssp EEECCSCSEEEEEEE-EETCTTCCEEECTTS--EEESCTTSCTTTTCTTCCEEECTTSCCEECC--TTTTTTCTTCCEEE
T ss_pred EEECCCCcccccccc-ccccCCCCEEEccCC--ccccccchhhhhcCCCCCEEeCcCCcccccc--hhhhhcCCcCcEEE
Confidence 999988831111112 345688999999885 4443222223457889999999998765421 12234688999999
Q ss_pred ecCCCCCCH-HHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcc-c-ccCCCCCCEE
Q 003957 660 LEECGDITA-YGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIP-D-YADRYSLSTV 736 (784)
Q Consensus 660 L~~c~~i~~-~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~-~-~~~~~~L~~L 736 (784)
+++|. +++ ..+..+..+++|+.|++++|.+ . ...+..+..+++|+.|++++|... ++| . +..+++|++|
T Consensus 452 l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l--~-~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 452 MAGNS-FQENFLPDIFTELRNLTFLDLSQCQL--E-QLSPTAFNSLSSLQVLNMASNQLK----SVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCE-EGGGEECSCCTTCTTCCEEECTTSCC--C-EECTTTTTTCTTCCEEECCSSCCS----CCCTTTTTTCTTCCEE
T ss_pred CcCCc-CccccchhhhhcccCCCEEECCCCcc--c-cCChhhhhcccCCCEEeCCCCcCC----CCCHHHhhcccCCcEE
Confidence 99887 432 2234456789999999999965 4 444667888999999999988665 334 3 7888999999
Q ss_pred EecCCCCcCc
Q 003957 737 KITKCKSKNR 746 (784)
Q Consensus 737 ~is~C~~~~~ 746 (784)
++++|+....
T Consensus 524 ~l~~N~~~~~ 533 (570)
T 2z63_A 524 WLHTNPWDCS 533 (570)
T ss_dssp ECCSSCBCCC
T ss_pred EecCCcccCC
Confidence 9999875443
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.8e-27 Score=287.30 Aligned_cols=265 Identities=15% Similarity=0.044 Sum_probs=128.6
Q ss_pred CCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccC
Q 003957 435 SSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFS 513 (784)
Q Consensus 435 ~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~ 513 (784)
++|+.|++++|.+...... .+..+++|+.|+++++. ++... ...+..+++|++|+++ +.+.
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~-i~~~~----------------~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNK-INKIA----------------DEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp SCCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCC-CCEEC----------------TTTTTTCSSCCEEEEESCCCS
T ss_pred CCccEEECCCCcccccChh-hhhcCCCCCEEECCCCc-CCCCC----------------hHHhcCCCCCCEEECCCCCCC
Confidence 4566666666655433211 12455666666665542 22111 0134445566666663 3333
Q ss_pred cccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHH
Q 003957 514 FLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSIS 593 (784)
Q Consensus 514 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~ 593 (784)
.... ..+..+++|+.|+++++ .+.......+ ..+++|+.|+++.|.++.. ..+++|+.|++++|.-.
T Consensus 328 ~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~i------~~~~~L~~L~l~~N~l~---- 394 (844)
T 3j0a_A 328 ELYS-SNFYGLPKVAYIDLQKN-HIAIIQDQTF-KFLEKLQTLDLRDNALTTI------HFIPSIPDIFLSGNKLV---- 394 (844)
T ss_dssp CCCS-CSCSSCTTCCEEECCSC-CCCCCCSSCS-CSCCCCCEEEEETCCSCCC------SSCCSCSEEEEESCCCC----
T ss_pred ccCH-HHhcCCCCCCEEECCCC-CCCccChhhh-cCCCCCCEEECCCCCCCcc------cCCCCcchhccCCCCcc----
Confidence 2211 12444556666666665 2221111111 2255666666666555531 22556666666666211
Q ss_pred HhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCH-----
Q 003957 594 SFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITA----- 668 (784)
Q Consensus 594 ~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~----- 668 (784)
.+.....+++.|++++ +.++..+......++++|+.|++++|....... ......+++|+.|++++|. ++.
T Consensus 395 ~l~~~~~~l~~L~ls~--N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~L~~L~Ls~N~-l~~~~~~~ 470 (844)
T 3j0a_A 395 TLPKINLTANLIHLSE--NRLENLDILYFLLRVPHLQILILNQNRFSSCSG-DQTPSENPSLEQLFLGENM-LQLAWETE 470 (844)
T ss_dssp CCCCCCTTCCEEECCS--CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS-SSSSCSCTTCCBCEEESCC-CSSSCCSC
T ss_pred cccccccccceeeccc--CccccCchhhhhhcCCccceeeCCCCccccccc-ccccccCCccccccCCCCc-cccccccc
Confidence 1112234566666666 345544333344456666666666665542100 0011235666666666655 221
Q ss_pred HHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCC
Q 003957 669 YGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKS 743 (784)
Q Consensus 669 ~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~ 743 (784)
.....+.++++|+.|+|++|.+ + ...+..+.++++|+.|+|++|... .+|. +. ++|+.|++++|..
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~Ls~N~l~----~l~~~~~~--~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYL--N-SLPPGVFSHLTALRGLSLNSNRLT----VLSHNDLP--ANLEILDISRNQL 538 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHH--T-TCCTTSSSSCCSCSEEEEESCCCS----SCCCCCCC--SCCCEEEEEEECC
T ss_pred cchhhhcCcccccEEECCCCcc--c-ccChhHccchhhhheeECCCCCCC----ccChhhhh--ccccEEECCCCcC
Confidence 1112234556666666666643 2 333334556666666666666544 2333 32 5666666666654
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2.8e-24 Score=247.30 Aligned_cols=413 Identities=14% Similarity=0.079 Sum_probs=258.8
Q ss_pred CCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhcc
Q 003957 287 GPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSE 366 (784)
Q Consensus 287 ~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~ 366 (784)
...+++|++|++++|. ++......+ ..+++|++|++++|.. +... +..+.++++|++|++++|.+...+
T Consensus 46 ~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~l-~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~------- 114 (549)
T 2z81_A 46 LRACANLQVLILKSSR-INTIEGDAF-YSLGSLEHLDLSDNHL-SSLS-SSWFGPLSSLKYLNLMGNPYQTLG------- 114 (549)
T ss_dssp TSSCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTTSCC-CSCC-HHHHTTCTTCCEEECTTCCCSSSC-------
T ss_pred hhcCCcccEEECCCCC-cCccChhhc-cccccCCEEECCCCcc-CccC-HHHhccCCCCcEEECCCCcccccc-------
Confidence 3567899999999884 343222223 3578899999998643 3221 233567899999999998776411
Q ss_pred CCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCC
Q 003957 367 VPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDT 445 (784)
Q Consensus 367 l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~ 445 (784)
.|..+..+++|++|++++|..++...... +..+++|+.|++++|.++......+. .++|++|++++|
T Consensus 115 -----------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 115 -----------VTSLFPNLTNLQTLRIGNVETFSEIRRID-FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp -----------SSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred -----------hhhhhhccCCccEEECCCCccccccCHhh-hhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 23345778889999998886443221112 26788899999998888776666665 578888888888
Q ss_pred ccchhhHHHHHhcCCCccEEeccCCCcccccccccc--ccccCCCC-------------chhhHHhhhcCCCccEEEecc
Q 003957 446 MISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGR--GIEFSSYP-------------CADLFAELGRTRKLEEIVLGW 510 (784)
Q Consensus 446 ~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~--~~~~~~~~-------------~~~~~~~l~~l~~L~~L~L~~ 510 (784)
.+.... ..+...+++|++|+++++. ++...+... ...++.+. ...+...+..++.|+.+++..
T Consensus 183 ~~~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 183 ESAFLL-EIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp BSTTHH-HHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cccccc-hhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 765433 2334567888888887763 222111100 00000000 011222334455666666632
Q ss_pred -ccCcc-----cHhhhhhhcCcccEEEecCCCCCChH----HHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcE
Q 003957 511 -GFSFL-----SLEVLKPAIKLLHSITVGLGGSLGED----ALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQV 580 (784)
Q Consensus 511 -~~~~~-----~~~~~~~~l~~L~~L~L~~~~~l~~~----~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~ 580 (784)
.+... .....+..+.+|+.|++.++. ++.. .+..+....++|+.|+++.+.++.. ...++.++++|++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i-p~~~~~~l~~L~~ 338 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV-PCSFSQHLKSLEF 338 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC-CHHHHHHCTTCCE
T ss_pred ccccccccccccchhhhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEeccCccccC-CHHHHhcCccccE
Confidence 11110 001123345567777766652 1110 0011112356799999987777643 2234467899999
Q ss_pred EEeccc-CChhHHHH--hhcCCCCccEEEccCCCCCCChHHH-HHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCc
Q 003957 581 LAICHC-LGDLSISS--FKLPLPNLRKLKLERVTPWMTNNDL-VILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLI 656 (784)
Q Consensus 581 L~Ls~c-~~~~~~~~--l~~~~~~L~~L~L~~c~~~l~~~~l-~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~ 656 (784)
|++++| +.+..+.. ....+++|++|++++| .++.... ...+..+++|++|++++|.... .......+++|+
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~~~~L~ 413 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN--HLRSMQKTGEILLTLKNLTSLDISRNTFHP---MPDSCQWPEKMR 413 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS--CCCCHHHHHHHGGGCTTCCEEECTTCCCCC---CCSCCCCCTTCC
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCC--cccccccchhhhhcCCCCCEEECCCCCCcc---CChhhccccccc
Confidence 999999 44444332 2456689999999994 6765432 3456788999999999997653 111223578999
Q ss_pred EEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEE
Q 003957 657 SLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTV 736 (784)
Q Consensus 657 ~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L 736 (784)
.|++++|. ++.... .-.++|+.|++++|.+ + .. ...+++|++|++++|... .+|....+++|++|
T Consensus 414 ~L~Ls~N~-l~~l~~---~~~~~L~~L~Ls~N~l--~--~~---~~~l~~L~~L~Ls~N~l~----~ip~~~~l~~L~~L 478 (549)
T 2z81_A 414 FLNLSSTG-IRVVKT---CIPQTLEVLDVSNNNL--D--SF---SLFLPRLQELYISRNKLK----TLPDASLFPVLLVM 478 (549)
T ss_dssp EEECTTSC-CSCCCT---TSCTTCSEEECCSSCC--S--CC---CCCCTTCCEEECCSSCCS----SCCCGGGCTTCCEE
T ss_pred EEECCCCC-cccccc---hhcCCceEEECCCCCh--h--hh---cccCChhcEEECCCCccC----cCCCcccCccCCEE
Confidence 99999987 442110 1236899999999976 3 21 357899999999998765 56776678999999
Q ss_pred EecCCCCcCc
Q 003957 737 KITKCKSKNR 746 (784)
Q Consensus 737 ~is~C~~~~~ 746 (784)
++++|+....
T Consensus 479 ~Ls~N~l~~~ 488 (549)
T 2z81_A 479 KISRNQLKSV 488 (549)
T ss_dssp ECCSSCCCCC
T ss_pred ecCCCccCCc
Confidence 9999976543
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=3.4e-25 Score=253.18 Aligned_cols=206 Identities=14% Similarity=0.070 Sum_probs=140.1
Q ss_pred hhcCcccEEEecCCCC-CChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCC
Q 003957 522 PAIKLLHSITVGLGGS-LGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPL 599 (784)
Q Consensus 522 ~~l~~L~~L~L~~~~~-l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~ 599 (784)
..+++|+.++++++.. ++...+..+.. .++|+.|+++.+.+..... ...+++|++|++++| +.+..+..+ ..+
T Consensus 273 ~~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l 347 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENC-GHL 347 (520)
T ss_dssp CCCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTC-CCC
T ss_pred ccCceeEeccccccceecchhhhhcccc-cCceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhh-ccC
Confidence 3455566666665532 22222222211 2468888887766655321 246788899999888 333233333 456
Q ss_pred CCccEEEccCCCCCCChH-HHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCC
Q 003957 600 PNLRKLKLERVTPWMTNN-DLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCI 678 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~-~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~ 678 (784)
++|++|+++++ .++.. .+...+..+++|++|++++|........ ....++++|+.|++++|. ++...+..+ .+
T Consensus 348 ~~L~~L~L~~N--~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~l--~~ 421 (520)
T 2z7x_B 348 TELETLILQMN--QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCSWTKSLLSLNMSSNI-LTDTIFRCL--PP 421 (520)
T ss_dssp SSCCEEECCSS--CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-CSCCCCTTCCEEECCSSC-CCGGGGGSC--CT
T ss_pred CCCCEEEccCC--ccCccccchHHHhhCCCCCEEECCCCcCCccccc-chhccCccCCEEECcCCC-CCcchhhhh--cc
Confidence 89999999994 67653 3445567889999999999987652221 122457899999999987 654333222 27
Q ss_pred CCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcCc
Q 003957 679 ALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 679 ~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~~ 746 (784)
+|+.|++++|.+ ..++..+..+++|+.|++++|... .+|. +..+++|++|++++|+....
T Consensus 422 ~L~~L~Ls~N~l----~~ip~~~~~l~~L~~L~L~~N~l~----~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 422 RIKVLDLHSNKI----KSIPKQVVKLEALQELNVASNQLK----SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TCCEEECCSSCC----CCCCGGGGGCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCEEECCCCcc----cccchhhhcCCCCCEEECCCCcCC----ccCHHHhccCCcccEEECcCCCCccc
Confidence 999999999987 566666779999999999998766 4565 78899999999999986543
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1.3e-25 Score=271.17 Aligned_cols=469 Identities=14% Similarity=0.066 Sum_probs=292.4
Q ss_pred cCeEEeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCcee
Q 003957 176 LPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVS 255 (784)
Q Consensus 176 l~~~~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~ 255 (784)
+|. ..+++++|||++|.-.... ...+..+++|++|++++|..+....... +.++++|++|+|+++.-..+
T Consensus 19 vP~-lp~~l~~LdLs~N~i~~i~---~~~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~l~~~----- 88 (844)
T 3j0a_A 19 VPQ-VLNTTERLLLSFNYIRTVT---ASSFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKIYFL----- 88 (844)
T ss_dssp CCS-SCTTCCEEEEESCCCCEEC---SSSCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCCCCEE-----
T ss_pred CCC-CCCCcCEEECCCCcCCccC---hhHCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCcCccc-----
Confidence 555 5578999999987532210 0113578899999999864433221222 34788999999996432111
Q ss_pred eeecCCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHH-HHHcCCCCCeEecCCCCccCHHH
Q 003957 256 VVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEF-ISKYCVSLGYINIKGCVSVTDVC 334 (784)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~-l~~~~~~L~~L~L~~c~~l~~~~ 334 (784)
.+.....+++|++|+|++|.. ++..+.. ....+++|++|++++|.. +...
T Consensus 89 ---------------------------~p~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~L~~L~~L~Ls~N~l-~~~~ 139 (844)
T 3j0a_A 89 ---------------------------HPDAFQGLFHLFELRLYFCGL-SDAVLKDGYFRNLKALTRLDLSKNQI-RSLY 139 (844)
T ss_dssp ---------------------------CTTSSCSCSSCCCEECTTCCC-SSCCSTTCCCSSCSSCCEEEEESCCC-CCCC
T ss_pred ---------------------------CHhHccCCcccCEeeCcCCCC-CcccccCccccccCCCCEEECCCCcc-cccc
Confidence 112246778999999998853 3211111 123578889999888643 2222
Q ss_pred HHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcC--CCccEEEecCCCCCCHHHHHHHHHhCc
Q 003957 335 ISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLA--SNLQMLHMACCNGVDGMYLLELMCQAR 412 (784)
Q Consensus 335 l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l--~~L~~L~L~~c~~l~~~~l~~l~~~~~ 412 (784)
....+.++++|+.|++++|.+..... ..+..+ ++|+.|++++|........ . ...++
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~i~~~~~-------------------~~l~~l~~~~L~~L~L~~n~l~~~~~~-~-~~~~~ 198 (844)
T 3j0a_A 140 LHPSFGKLNSLKSIDFSSNQIFLVCE-------------------HELEPLQGKTLSFFSLAANSLYSRVSV-D-WGKCM 198 (844)
T ss_dssp CCGGGGTCSSCCEEEEESSCCCCCCS-------------------GGGHHHHHCSSCCCEECCSBSCCCCCC-C-CCSSS
T ss_pred cchhHhhCCCCCEEECCCCcCCeeCH-------------------HHcccccCCccceEECCCCcccccccc-c-hhhcC
Confidence 22345678888888888887654211 111222 6888888888754321100 0 02222
Q ss_pred ------cccEEEecCCcCchhhhhhcc----cCCcCEEEecCC---------ccchhhHHHHHhc--CCCccEEeccCCC
Q 003957 413 ------KLKSLCLSGTQLADKALYNFS----GSSLEMLDVSDT---------MISGAALAYMVHG--NSGLKYLNARGCK 471 (784)
Q Consensus 413 ------~L~~L~Ls~~~l~~~~~~~l~----~~~L~~L~Ls~~---------~i~~~~l~~~~~~--l~~L~~L~L~~c~ 471 (784)
.|+.|++++|.++......+. ...++.|.++++ .+.......+ .+ .++|+.|+++++.
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f-~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF-AGLARSSVRHLDLSHGF 277 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT-TTTTTSCCCEEECTTCC
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh-hccccCCccEEECCCCc
Confidence 488888888876655544433 467888887632 1222221111 22 3688999988763
Q ss_pred ccccccccccccccCCCCchhhHHhhhcCCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccC
Q 003957 472 NLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTC 550 (784)
Q Consensus 472 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~ 550 (784)
+.... ...+..+++|+.|++ ++.+...... .+..+++|+.|+++++. ++......+. .+
T Consensus 278 -l~~~~----------------~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l 337 (844)
T 3j0a_A 278 -VFSLN----------------SRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNL-LGELYSSNFY-GL 337 (844)
T ss_dssp -CCEEC----------------SCCSSSCCCCCEEEEESCCCCEECTT-TTTTCSSCCEEEEESCC-CSCCCSCSCS-SC
T ss_pred -ccccC----------------hhhhhcCCCCCEEECCCCcCCCCChH-HhcCCCCCCEEECCCCC-CCccCHHHhc-CC
Confidence 32211 114566788999999 4455544333 45678899999999883 3221111222 37
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++|+.|+++.|.++... ...+.++++|+.|++++|. .. + ..+++|+.|.++++ .++.. .....++
T Consensus 338 ~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~-----i-~~~~~L~~L~l~~N--~l~~l-----~~~~~~l 403 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALTT-----I-HFIPSIPDIFLSGN--KLVTL-----PKINLTA 403 (844)
T ss_dssp TTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCCSCC-----C-SSCCSCSEEEEESC--CCCCC-----CCCCTTC
T ss_pred CCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCCCCc-----c-cCCCCcchhccCCC--Ccccc-----ccccccc
Confidence 88999999877776532 2235678899999999883 21 1 12688999999994 55521 2235689
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHH-HHhhCCCCCCEEEcccCCCCC-C-hhHHHHHHhcCCC
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGV-TSLFNCIALEDLLLRHNGPGI-P-RDFILDAASKMPM 706 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~-~~l~~~~~L~~L~L~~n~~gl-~-~~~~~~~l~~l~~ 706 (784)
+.|++++|......... ...++++|+.|+|++|. ++.... ..+..+++|+.|++++|.+.. . ....+..+.++++
T Consensus 404 ~~L~ls~N~l~~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 404 NLIHLSENRLENLDILY-FLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp CEEECCSCCCCSSTTHH-HHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred ceeecccCccccCchhh-hhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence 99999998876533222 33479999999999987 442211 123368999999999997510 0 0112234678899
Q ss_pred CceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcC
Q 003957 707 LRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 707 L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~ 745 (784)
|+.|+|++|... .+|+ +..+++|++|++++|....
T Consensus 482 L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 482 LQVLYLNHNYLN----SLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp EECCCCCHHHHT----TCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred ccEEECCCCccc----ccChhHccchhhhheeECCCCCCCc
Confidence 999999999766 3344 8899999999999997543
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.9e-26 Score=266.65 Aligned_cols=457 Identities=15% Similarity=0.076 Sum_probs=259.6
Q ss_pred CcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeecCC
Q 003957 182 EAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSS 261 (784)
Q Consensus 182 ~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~~~ 261 (784)
+++++|+++++.-..... ..+..+++|++|++++| .++......+ ..+++|++|+|+++.-..++.
T Consensus 28 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n-~i~~i~~~~~-~~l~~L~~L~L~~n~l~~~~~--------- 93 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGNPIQSLAL--------- 93 (570)
T ss_dssp SSCCEEECCSCCCCEECT---TTTTTCSSCCEEECTTC-CCCEECTTTT-TTCTTCCEEECTTCCCCEECT---------
T ss_pred ccccEEEccCCccCccCh---hHhhCCCCceEEECCCC-cCCccCcccc-cCchhCCEEeCcCCcCCccCH---------
Confidence 467777777764322110 11245777777777773 4443222222 367777777777543211111
Q ss_pred ccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHh
Q 003957 262 ALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRR 341 (784)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~ 341 (784)
.....+++|++|++++|.. +...... ...+++|++|++++|.. +...++..+.+
T Consensus 94 -----------------------~~~~~l~~L~~L~L~~n~l-~~l~~~~-~~~l~~L~~L~L~~n~l-~~~~lp~~~~~ 147 (570)
T 2z63_A 94 -----------------------GAFSGLSSLQKLVAVETNL-ASLENFP-IGHLKTLKELNVAHNLI-QSFKLPEYFSN 147 (570)
T ss_dssp -----------------------TTTTTCTTCCEEECTTSCC-CCSTTCS-CTTCTTCCEEECCSSCC-CCCCCCGGGGG
T ss_pred -----------------------hhhcCcccccccccccccc-ccCCCcc-ccccccccEEecCCCcc-ceecChhhhcc
Confidence 1134556666666666532 2111001 12366666666666432 21112223445
Q ss_pred CCCCCEEEeeCCCCCHH---HHHHhhccCC------ccCccccccc-chhhhcCCCccEEEecCCCCCCHHHHHHHHHhC
Q 003957 342 CVKLQSIIVCDTSFGVY---SIRALCSEVP------YCNSSALCGK-RNFNTLASNLQMLHMACCNGVDGMYLLELMCQA 411 (784)
Q Consensus 342 ~~~L~~L~Ls~~~i~~~---~l~~l~~~l~------~~~~~~~~~~-~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~ 411 (784)
+++|++|++++|.+... .+..+. .+. +........+ +..+. ..+|+.|+++++..-. ..++.....+
T Consensus 148 l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~~~~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~-~~~~~~~~~l 224 (570)
T 2z63_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSL-NVMKTCIQGL 224 (570)
T ss_dssp CTTCCEEECTTSCCCEECGGGGHHHH-TCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCT-THHHHHHHTT
T ss_pred cCCCCEEeCcCCccceecHHHccchh-ccchhhhhcccCCCCceecCHHHhc-cCcceeEecccccccc-cchhhhhcCc
Confidence 66666666666655431 111111 010 0000001111 22222 2378888888874322 2344444566
Q ss_pred ccccEEEecC--------------------------------C-cCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHh
Q 003957 412 RKLKSLCLSG--------------------------------T-QLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVH 457 (784)
Q Consensus 412 ~~L~~L~Ls~--------------------------------~-~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~ 457 (784)
++++.+.+.. + .+.+.....+. .++|+.|++++|.+.. +.....
T Consensus 225 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--l~~~~~ 302 (570)
T 2z63_A 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSY 302 (570)
T ss_dssp TTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS--CCBCCS
T ss_pred cccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh--hhhhhc
Confidence 6665544432 1 11111122222 3677777777776543 112223
Q ss_pred cCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCC
Q 003957 458 GNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGS 537 (784)
Q Consensus 458 ~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 537 (784)
.+ +|++|++.+|.. ...+ ...+++|++|++..+....... ...+++|+.|+++++.
T Consensus 303 ~~-~L~~L~l~~n~~-~~l~-------------------~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~n~- 358 (570)
T 2z63_A 303 NF-GWQHLELVNCKF-GQFP-------------------TLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNG- 358 (570)
T ss_dssp CC-CCSEEEEESCBC-SSCC-------------------BCBCSSCCEEEEESCBSCCBCC--CCBCTTCCEEECCSSC-
T ss_pred cC-CccEEeeccCcc-cccC-------------------cccccccCEEeCcCCccccccc--cccCCCCCEEeCcCCc-
Confidence 44 777777777632 2111 1356789999994332211111 1567899999999883
Q ss_pred CChHH--HHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCC
Q 003957 538 LGEDA--LRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWM 614 (784)
Q Consensus 538 l~~~~--l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l 614 (784)
++... ...+. .+++|+.|+++.+.++.... .+.++++|++|++++|. ...........+++|++|++++| .+
T Consensus 359 l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l 433 (570)
T 2z63_A 359 LSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HT 433 (570)
T ss_dssp CBEEEEEEHHHH-TCSCCCEEECCSCSEEEEEE--EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS--CC
T ss_pred cCcccccccccc-ccCccCEEECCCCccccccc--cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC--cc
Confidence 33211 11222 47889999998777665321 16678999999999983 32222223456799999999996 44
Q ss_pred ChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCCh
Q 003957 615 TNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPR 694 (784)
Q Consensus 615 ~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~ 694 (784)
+.. ....+.++++|++|++++|...... ......++++|+.|++++|. ++...+..+.++++|+.|++++|.+ .
T Consensus 434 ~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l--~- 507 (570)
T 2z63_A 434 RVA-FNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQL--K- 507 (570)
T ss_dssp EEC-CTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCC--S-
T ss_pred ccc-chhhhhcCCcCcEEECcCCcCcccc-chhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcC--C-
Confidence 432 2233457899999999999864211 11223568999999999987 6666566777899999999999976 4
Q ss_pred hHHHHHHhcCCCCceecccccccc
Q 003957 695 DFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 695 ~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
...+..+..+++|+.|++++|+..
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCHHHhhcccCCcEEEecCCccc
Confidence 444556889999999999998876
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=4.1e-25 Score=257.96 Aligned_cols=328 Identities=13% Similarity=0.100 Sum_probs=166.2
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHh------Cccc
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQ------ARKL 414 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~------~~~L 414 (784)
++++|++|++++|.+.. .+|..+..+++|++|++++|..++...++..+.. +++|
T Consensus 247 ~l~~L~~L~L~~n~l~~-------------------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLT-------------------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp GCTTCCEEEEECCTTCS-------------------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred ccCCCCEEEecCCcCCc-------------------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence 56667777776665433 1444456666777777777664443123222233 2666
Q ss_pred cEEEecCCcCchhhh-hhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchh
Q 003957 415 KSLCLSGTQLADKAL-YNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCAD 492 (784)
Q Consensus 415 ~~L~Ls~~~l~~~~~-~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~ 492 (784)
+.|++++|.++.... ..+. .++|++|++++|.+++... .+..+++|++|+++++. ++.
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~-l~~----------------- 367 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQ-ITE----------------- 367 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSE-EEE-----------------
T ss_pred CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCc-ccc-----------------
Confidence 677666666652211 1333 4566666666665552211 23455666666665542 211
Q ss_pred hHHhhhcCCC-ccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHH
Q 003957 493 LFAELGRTRK-LEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIIN 570 (784)
Q Consensus 493 ~~~~l~~l~~-L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~ 570 (784)
+...+..+++ |++|+++ +.+..++. .+.... +++|+.|+++.|.++... +.
T Consensus 368 lp~~l~~l~~~L~~L~Ls~N~l~~lp~--~~~~~~------------------------l~~L~~L~Ls~N~l~~~~-p~ 420 (636)
T 4eco_A 368 IPANFCGFTEQVENLSFAHNKLKYIPN--IFDAKS------------------------VSVMSAIDFSYNEIGSVD-GK 420 (636)
T ss_dssp CCTTSEEECTTCCEEECCSSCCSSCCS--CCCTTC------------------------SSCEEEEECCSSCTTTTT-TC
T ss_pred ccHhhhhhcccCcEEEccCCcCcccch--hhhhcc------------------------cCccCEEECcCCcCCCcc-hh
Confidence 1113444444 5555552 22222111 111111 123444444444443321 01
Q ss_pred HHh-------hCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHH------HhcCCCCcEEEecCC
Q 003957 571 ILE-------SLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVIL------TQNCSELVELSLVGC 637 (784)
Q Consensus 571 ~~~-------~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l------~~~~~~L~~L~Ls~c 637 (784)
.+. .+++|+.|++++|........+...+++|++|+++++ .++......+ ..++++|++|++++|
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN--MLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS--CCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC--CCCCcCHHHhccccccccccCCccEEECcCC
Confidence 111 2335555555555211222222233455555555552 3331110000 012237777777777
Q ss_pred CCCChHHHHHHH-hcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCC----CCChhHHHHHHhcCCCCceecc
Q 003957 638 TLLSSDSQLIIS-QGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGP----GIPRDFILDAASKMPMLRLVSL 712 (784)
Q Consensus 638 ~~~~~~~~~~~~-~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~----gl~~~~~~~~l~~l~~L~~L~L 712 (784)
.+.. ....+. ..+++|+.|+|++|. ++. .+..+.++++|+.|++++|.. .+. ..++..+..+++|+.|+|
T Consensus 499 ~l~~--lp~~~~~~~l~~L~~L~Ls~N~-l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~-~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 499 KLTK--LSDDFRATTLPYLVGIDLSYNS-FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL-REWPEGITLCPSLTQLQI 573 (636)
T ss_dssp CCCB--CCGGGSTTTCTTCCEEECCSSC-CSS-CCCGGGGCSSCCEEECCSCBCTTCCBCC-CCCCTTGGGCSSCCEEEC
T ss_pred cCCc--cChhhhhccCCCcCEEECCCCC-CCC-cChhhhcCCCCCEEECCCCcccccCccc-ccChHHHhcCCCCCEEEC
Confidence 6552 111121 257788888888776 443 334455788888888854320 112 445666778888888888
Q ss_pred ccccccCCCCCccc-ccCCCCCCEEEecCCCCcCcc
Q 003957 713 DLCDASDGNFEIPD-YADRYSLSTVKITKCKSKNRN 747 (784)
Q Consensus 713 ~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~~~ 747 (784)
++|... .+|. +. ++|++|++++|+.....
T Consensus 574 s~N~l~----~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 574 GSNDIR----KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CSSCCC----BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCCcCC----ccCHhHh--CcCCEEECcCCCCcccc
Confidence 888773 4566 44 78888888888765443
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=4.3e-23 Score=235.68 Aligned_cols=397 Identities=14% Similarity=0.062 Sum_probs=243.7
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCcc
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYC 370 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~ 370 (784)
++|++|++++|. ++......+ ..+++|++|++++|.. +... +..+.++++|++|++++|.++.
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~l-~~~~-~~~~~~l~~L~~L~Ls~N~l~~------------- 83 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDI-LSLSKLRILIISHNRI-QYLD-ISVFKFNQELEYLDLSHNKLVK------------- 83 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHH-TTCTTCCEEECCSSCC-CEEE-GGGGTTCTTCCEEECCSSCCCE-------------
T ss_pred ccccEEECCCCc-ccccChhhc-cccccccEEecCCCcc-CCcC-hHHhhcccCCCEEecCCCceee-------------
Confidence 789999999885 333222333 3588899999988643 3211 2234678899999999988775
Q ss_pred CcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCc--CEEEecCCcc-
Q 003957 371 NSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSL--EMLDVSDTMI- 447 (784)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L--~~L~Ls~~~i- 447 (784)
+|.. .+++|++|++++|.... ..++..+..+++|+.|++++|.++...+..+ ++| ++|++++|.+
T Consensus 84 -------lp~~--~l~~L~~L~L~~N~l~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 84 -------ISCH--PTVNLKHLDLSFNAFDA-LPICKEFGNMSQLKFLGLSTTHLEKSSVLPI--AHLNISKVLLVLGETY 151 (520)
T ss_dssp -------EECC--CCCCCSEEECCSSCCSS-CCCCGGGGGCTTCCEEEEEESSCCGGGGGGG--TTSCEEEEEEEECTTT
T ss_pred -------cCcc--ccCCccEEeccCCcccc-ccchhhhccCCcceEEEecCcccchhhcccc--ccceeeEEEeeccccc
Confidence 4443 67888888888886522 1111223678888888888888776544433 455 8888888876
Q ss_pred -chhhHHHHH-------------------------hcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCC
Q 003957 448 -SGAALAYMV-------------------------HGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTR 501 (784)
Q Consensus 448 -~~~~l~~~~-------------------------~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 501 (784)
.......+. ..+++|+.|+++++..... |.. .......+..++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---------~~~--~~~~~~~l~~l~ 220 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK---------CSY--FLSILAKLQTNP 220 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT---------THH--HHHHHHGGGGCT
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc---------cce--eecchhhhcccc
Confidence 332221110 1233444444433321000 000 011223566677
Q ss_pred CccEEEec-cccCcccHhhhhh--hcCcccEEEecCCCCCChHHHHHh----hccCCCCcEEEeeeecc--ChHHHHHHH
Q 003957 502 KLEEIVLG-WGFSFLSLEVLKP--AIKLLHSITVGLGGSLGEDALRLL----PTTCPMLELVVLYFQVM--SDSIIINIL 572 (784)
Q Consensus 502 ~L~~L~L~-~~~~~~~~~~~~~--~l~~L~~L~L~~~~~l~~~~l~~l----~~~~~~L~~L~L~~~~i--~~~~l~~~~ 572 (784)
+|+.|++. ..++........+ ..++|+.|+++++. +.+.....+ ...++.|+.++++.+.+ ....+...+
T Consensus 221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~ 299 (520)
T 2z7x_B 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299 (520)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHH
T ss_pred chhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccceecchhhhhccc
Confidence 78888773 3333222222222 13478888887762 111100111 02356677777765554 112222222
Q ss_pred hhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhc
Q 003957 573 ESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQG 651 (784)
Q Consensus 573 ~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~ 651 (784)
. .++|+.|++++|. .... +...+++|++|+++++ .++.... ..+..+++|++|++++|.+..-........+
T Consensus 300 ~-~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 300 S-NMNIKNFTVSGTRMVHML---CPSKISPFLHLDFSNN--LLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp H-TCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSS--CCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred c-cCceeEEEcCCCcccccc---chhhCCcccEEEeECC--ccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhh
Confidence 2 2578999998883 2111 1146789999999995 5665322 2335789999999999988763333444567
Q ss_pred CCCCcEEeecCCCCCCH-HHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccC
Q 003957 652 WPGLISLHLEECGDITA-YGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YAD 729 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~-~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~ 729 (784)
+++|+.|++++|. ++. .....+..+++|+.|++++|.+ . ...+..+. ++|+.|++++|... .+|. +..
T Consensus 373 l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~~l~--~~L~~L~Ls~N~l~----~ip~~~~~ 442 (520)
T 2z7x_B 373 MKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNIL--T-DTIFRCLP--PRIKVLDLHSNKIK----SIPKQVVK 442 (520)
T ss_dssp CTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCC--C-GGGGGSCC--TTCCEEECCSSCCC----CCCGGGGG
T ss_pred CCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCC--C-cchhhhhc--ccCCEEECCCCccc----ccchhhhc
Confidence 9999999999987 554 3333456789999999999965 4 32222221 79999999998766 5687 779
Q ss_pred CCCCCEEEecCCCCcC
Q 003957 730 RYSLSTVKITKCKSKN 745 (784)
Q Consensus 730 ~~~L~~L~is~C~~~~ 745 (784)
+++|++|++++|+...
T Consensus 443 l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 443 LEALQELNVASNQLKS 458 (520)
T ss_dssp CTTCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCcCCc
Confidence 9999999999997653
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=3.2e-22 Score=224.99 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=78.6
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCc
Q 003957 290 PSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPY 369 (784)
Q Consensus 290 l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~ 369 (784)
+++|++|+++++.. +. +..+ ..+++|++|++++|.. ++.. . +.++++|+.|++++|.+..
T Consensus 45 l~~l~~L~l~~~~i-~~--l~~~-~~l~~L~~L~Ls~n~l-~~~~--~-~~~l~~L~~L~l~~n~l~~------------ 104 (466)
T 1o6v_A 45 LDQVTTLQADRLGI-KS--IDGV-EYLNNLTQINFSNNQL-TDIT--P-LKNLTKLVDILMNNNQIAD------------ 104 (466)
T ss_dssp HHTCCEEECCSSCC-CC--CTTG-GGCTTCCEEECCSSCC-CCCG--G-GTTCTTCCEEECCSSCCCC------------
T ss_pred hccccEEecCCCCC-cc--Ccch-hhhcCCCEEECCCCcc-CCch--h-hhccccCCEEECCCCcccc------------
Confidence 46778888877642 22 1122 3467777777777543 2211 1 4566777777777776654
Q ss_pred cCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccc
Q 003957 370 CNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMIS 448 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~ 448 (784)
++. +..+++|++|++++|...... . ...+++|+.|++++|.+++.. .+. .++|++|+++++. .
T Consensus 105 --------~~~-~~~l~~L~~L~L~~n~l~~~~---~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~~~-~ 168 (466)
T 1o6v_A 105 --------ITP-LANLTNLTGLTLFNNQITDID---P-LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQV-T 168 (466)
T ss_dssp --------CGG-GTTCTTCCEEECCSSCCCCCG---G-GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEESC-C
T ss_pred --------Chh-hcCCCCCCEEECCCCCCCCCh---H-HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCCcc-c
Confidence 222 356677777777766442211 1 256677777777766555432 222 4666666665432 1
Q ss_pred hhhHHHHHhcCCCccEEeccCC
Q 003957 449 GAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 449 ~~~l~~~~~~l~~L~~L~L~~c 470 (784)
... . +..+++|++|++++|
T Consensus 169 ~~~--~-~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 169 DLK--P-LANLTTLERLDISSN 187 (466)
T ss_dssp CCG--G-GTTCTTCCEEECCSS
T ss_pred Cch--h-hccCCCCCEEECcCC
Confidence 111 1 345666666666655
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.3e-23 Score=249.78 Aligned_cols=323 Identities=13% Similarity=0.072 Sum_probs=166.5
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHh-------Ccc
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQ-------ARK 413 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~-------~~~ 413 (784)
++++|+.|++++|.+.. .+|..+..+++|+.|+|++|..++...++..+.. +++
T Consensus 489 ~L~~L~~L~Ls~N~l~~-------------------~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMT-------------------QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549 (876)
T ss_dssp GCTTCCEEEEESCTTCC-------------------SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT
T ss_pred cCCCCCEEECcCCCCCc-------------------cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC
Confidence 56667777776665432 1444556667777777776654443122222233 336
Q ss_pred ccEEEecCCcCchhhh-hhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCch
Q 003957 414 LKSLCLSGTQLADKAL-YNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCA 491 (784)
Q Consensus 414 L~~L~Ls~~~l~~~~~-~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~ 491 (784)
|+.|++++|.++.... ..+. .++|+.|++++|.++... .+..+++|+.|+++++.. +.
T Consensus 550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l-~~---------------- 609 (876)
T 4ecn_A 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQI-EE---------------- 609 (876)
T ss_dssp CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCC-SC----------------
T ss_pred ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCcc-cc----------------
Confidence 6666666666652211 1333 456666666666555221 234556666666655532 11
Q ss_pred hhHHhhhcCCC-ccEEEec-cccCcccHhhhhhhc--CcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH
Q 003957 492 DLFAELGRTRK-LEEIVLG-WGFSFLSLEVLKPAI--KLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI 567 (784)
Q Consensus 492 ~~~~~l~~l~~-L~~L~L~-~~~~~~~~~~~~~~l--~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~ 567 (784)
++..+..+++ |+.|+++ +.+..++ ..+... .+|+.|+++++ .+++..
T Consensus 610 -lp~~l~~l~~~L~~L~Ls~N~L~~lp--~~~~~~~~~~L~~L~Ls~N--------------------------~l~g~i 660 (876)
T 4ecn_A 610 -IPEDFCAFTDQVEGLGFSHNKLKYIP--NIFNAKSVYVMGSVDFSYN--------------------------KIGSEG 660 (876)
T ss_dssp -CCTTSCEECTTCCEEECCSSCCCSCC--SCCCTTCSSCEEEEECCSS--------------------------CTTTTS
T ss_pred -chHHHhhccccCCEEECcCCCCCcCc--hhhhccccCCCCEEECcCC--------------------------cCCCcc
Confidence 1113444444 5555552 2233211 111222 12555555544 333210
Q ss_pred HHHH---Hh--hCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHH------HHhcCCCCcEEEecC
Q 003957 568 IINI---LE--SLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVI------LTQNCSELVELSLVG 636 (784)
Q Consensus 568 l~~~---~~--~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~------l~~~~~~L~~L~Ls~ 636 (784)
+.+ +. .+++|+.|++++|........+...+++|+.|+++++ .++...... ...+|++|++|++++
T Consensus 661 -p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N--~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 661 -RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN--LMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp -SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC--CCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred -ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC--cCCccChHHhccccccccccCCccEEECCC
Confidence 000 00 1224555555555211222223333455555555552 333110000 011234778888887
Q ss_pred CCCCChHHHHHHH-hcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEccc------CCCCCChhHHHHHHhcCCCCce
Q 003957 637 CTLLSSDSQLIIS-QGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRH------NGPGIPRDFILDAASKMPMLRL 709 (784)
Q Consensus 637 c~~~~~~~~~~~~-~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~------n~~gl~~~~~~~~l~~l~~L~~ 709 (784)
|.+.. ....+. ..+++|+.|+|++|. ++. .+..+.++++|+.|+|++ |.+ . ..++..+..+++|+.
T Consensus 738 N~L~~--lp~~l~~~~l~~L~~L~Ls~N~-L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l--~-~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 738 NKLTS--LSDDFRATTLPYLSNMDVSYNC-FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI--L-RQWPTGITTCPSLIQ 810 (876)
T ss_dssp SCCCC--CCGGGSTTTCTTCCEEECCSSC-CSS-CCCGGGGCTTCCEEECCCCBCTTCCBC--C-CCCCTTGGGCSSCCE
T ss_pred CCCcc--chHHhhhccCCCcCEEEeCCCC-CCc-cchhhhcCCCCCEEECCCCCCcccccc--c-ccChHHHhcCCCCCE
Confidence 76552 111121 257788888888876 443 233455788888888876 432 3 455667788899999
Q ss_pred eccccccccCCCCCccc-ccCCCCCCEEEecCCCCcCcc
Q 003957 710 VSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKNRN 747 (784)
Q Consensus 710 L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~~~ 747 (784)
|+|++|... .+|. +. ++|+.|+|++|+.....
T Consensus 811 L~Ls~N~L~----~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 811 LQIGSNDIR----KVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp EECCSSCCC----BCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred EECCCCCCC----ccCHhhc--CCCCEEECCCCCCCccC
Confidence 999988773 4676 44 68999999999865443
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1e-21 Score=212.02 Aligned_cols=302 Identities=16% Similarity=0.140 Sum_probs=199.5
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEec
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLS 420 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls 420 (784)
.+++|++|+++++.+.. ++. +..+++|++|++++|....... ...+++|+.|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~--------------------~~~-~~~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~ 96 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS--------------------IQG-IEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIG 96 (347)
T ss_dssp HHTTCSEEECCSSCCCC--------------------CTT-GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECC
T ss_pred hcccccEEEEeCCcccc--------------------chh-hhhcCCccEEEccCCccccchh----hhcCCcCCEEEcc
Confidence 45788888888887765 222 3668889999998885432111 3788889999998
Q ss_pred CCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhc
Q 003957 421 GTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGR 499 (784)
Q Consensus 421 ~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (784)
+|.+++.. .+. .++|++|++++|.++.... +..+++|++|++++|..+.... .+..
T Consensus 97 ~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~------------------~~~~ 153 (347)
T 4fmz_A 97 TNKITDIS--ALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLS------------------PLSN 153 (347)
T ss_dssp SSCCCCCG--GGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCG------------------GGTT
T ss_pred CCcccCch--HHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCccccc------------------chhh
Confidence 88777642 344 5788888888887765433 4678888888888875544321 2344
Q ss_pred CCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 500 TRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 500 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
+++|++|++ +++....... +. .+++|++|+++.+.+++... +..+++|+
T Consensus 154 l~~L~~L~l------------------------~~~~~~~~~~---~~-~l~~L~~L~l~~n~l~~~~~---~~~l~~L~ 202 (347)
T 4fmz_A 154 MTGLNYLTV------------------------TESKVKDVTP---IA-NLTDLYSLSLNYNQIEDISP---LASLTSLH 202 (347)
T ss_dssp CTTCCEEEC------------------------CSSCCCCCGG---GG-GCTTCSEEECTTSCCCCCGG---GGGCTTCC
T ss_pred CCCCcEEEe------------------------cCCCcCCchh---hc-cCCCCCEEEccCCccccccc---ccCCCccc
Confidence 444555555 4442111111 22 25566666665555554321 55667777
Q ss_pred EEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEE
Q 003957 580 VLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISL 658 (784)
Q Consensus 580 ~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L 658 (784)
.|++++| ..+... ...+++|++|++++| .++.... ...+++|++|++++|....- . ....+++|+.|
T Consensus 203 ~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n--~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~-~~~~l~~L~~L 270 (347)
T 4fmz_A 203 YFTAYVNQITDITP---VANMTRLNSLKIGNN--KITDLSP---LANLSQLTWLEIGTNQISDI---N-AVKDLTKLKML 270 (347)
T ss_dssp EEECCSSCCCCCGG---GGGCTTCCEEECCSS--CCCCCGG---GTTCTTCCEEECCSSCCCCC---G-GGTTCTTCCEE
T ss_pred eeecccCCCCCCch---hhcCCcCCEEEccCC--ccCCCcc---hhcCCCCCEEECCCCccCCC---h-hHhcCCCcCEE
Confidence 7777777 222211 334577888888874 4554332 55678888888888876552 1 23468889999
Q ss_pred eecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEe
Q 003957 659 HLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKI 738 (784)
Q Consensus 659 ~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~i 738 (784)
++++|. ++.. ..+..+++|+.|++++|.+ . ...++.+..+++|+.|++++|+.. .++++..+++|++|++
T Consensus 271 ~l~~n~-l~~~--~~~~~l~~L~~L~L~~n~l--~-~~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~l~~L~~L~l 340 (347)
T 4fmz_A 271 NVGSNQ-ISDI--SVLNNLSQLNSLFLNNNQL--G-NEDMEVIGGLTNLTTLFLSQNHIT----DIRPLASLSKMDSADF 340 (347)
T ss_dssp ECCSSC-CCCC--GGGGGCTTCSEEECCSSCC--C-GGGHHHHHTCTTCSEEECCSSSCC----CCGGGGGCTTCSEESS
T ss_pred EccCCc-cCCC--hhhcCCCCCCEEECcCCcC--C-CcChhHhhccccCCEEEccCCccc----cccChhhhhccceeeh
Confidence 998886 5443 3466789999999999965 5 566777888999999999998865 3444778889999999
Q ss_pred cCCCC
Q 003957 739 TKCKS 743 (784)
Q Consensus 739 s~C~~ 743 (784)
++|+.
T Consensus 341 ~~N~i 345 (347)
T 4fmz_A 341 ANQVI 345 (347)
T ss_dssp SCC--
T ss_pred hhhcc
Confidence 98874
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1e-24 Score=254.65 Aligned_cols=347 Identities=13% Similarity=0.087 Sum_probs=213.1
Q ss_pred HHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhh--cCCCccEEEecCCCCCCHHHHHHHHHhCc
Q 003957 335 ISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNT--LASNLQMLHMACCNGVDGMYLLELMCQAR 412 (784)
Q Consensus 335 l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~--~l~~L~~L~L~~c~~l~~~~l~~l~~~~~ 412 (784)
++..+.++++|++|++++|.++...+..- ............+|..+. .+++|++|++++|..... ++..+.+++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~ 273 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEA--WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALP 273 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSS--CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCS
T ss_pred CCHHHhcccCCCEEECcCCcccccccccc--ccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCC
Confidence 44556789999999999998876211000 000000000000455556 788899999988865321 122236788
Q ss_pred cccEEEecCCc-Cch-hhhhhcc-------cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCcccccccccccc
Q 003957 413 KLKSLCLSGTQ-LAD-KALYNFS-------GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGI 483 (784)
Q Consensus 413 ~L~~L~Ls~~~-l~~-~~~~~l~-------~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~ 483 (784)
+|+.|++++|. ++. ..+..+. .++|++|++++|.++.......+..+++|++|+++++.. +
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l-~--------- 343 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL-E--------- 343 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCC-E---------
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcC-c---------
Confidence 88888888887 765 3333333 277888888888776221111346777888888776632 1
Q ss_pred ccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCC-CcEEEeeeec
Q 003957 484 EFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPM-LELVVLYFQV 562 (784)
Q Consensus 484 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~-L~~L~L~~~~ 562 (784)
+.+. .+..++ +|+.|+++++. +. .....+.. +++ |+.|+++.|.
T Consensus 344 -------g~ip-~~~~l~------------------------~L~~L~L~~N~-l~-~lp~~l~~-l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 344 -------GKLP-AFGSEI------------------------KLASLNLAYNQ-IT-EIPANFCG-FTEQVENLSFAHNK 388 (636)
T ss_dssp -------EECC-CCEEEE------------------------EESEEECCSSE-EE-ECCTTSEE-ECTTCCEEECCSSC
T ss_pred -------cchh-hhCCCC------------------------CCCEEECCCCc-cc-cccHhhhh-hcccCcEEEccCCc
Confidence 0111 233334 44445544441 11 00011222 455 7777776666
Q ss_pred cChHHHHHHHhh--CCCCcEEEeccc-CChhHHHHhh------cCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEE
Q 003957 563 MSDSIIINILES--LRRLQVLAICHC-LGDLSISSFK------LPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELS 633 (784)
Q Consensus 563 i~~~~l~~~~~~--l~~L~~L~Ls~c-~~~~~~~~l~------~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~ 633 (784)
++. ++..+.. +++|+.|++++| +....+..+. ..+++|++|+++++ .++... ..++..+++|++|+
T Consensus 389 l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N--~l~~lp-~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 389 LKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN--QISKFP-KELFSTGSPLSSIN 463 (636)
T ss_dssp CSS--CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS--CCCSCC-THHHHTTCCCSEEE
T ss_pred Ccc--cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC--ccCcCC-HHHHccCCCCCEEE
Confidence 652 3333333 348999999999 3333222222 14579999999994 666322 24556789999999
Q ss_pred ecCCCCCChHHHHHHHhc-------CCCCcEEeecCCCCCCHHHHHHhh--CCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 634 LVGCTLLSSDSQLIISQG-------WPGLISLHLEECGDITAYGVTSLF--NCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 634 Ls~c~~~~~~~~~~~~~~-------~~~L~~L~L~~c~~i~~~~~~~l~--~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
+++|.+.. ........ +++|+.|+|++|. ++. .+..+. .+++|+.|++++|.+ ..++..+..+
T Consensus 464 Ls~N~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-lp~~~~~~~l~~L~~L~Ls~N~l----~~ip~~~~~l 535 (636)
T 4eco_A 464 LMGNMLTE--IPKNSLKDENENFKNTYLLTSIDLRFNK-LTK-LSDDFRATTLPYLVGIDLSYNSF----SKFPTQPLNS 535 (636)
T ss_dssp CCSSCCSB--CCSSSSEETTEECTTGGGCCEEECCSSC-CCB-CCGGGSTTTCTTCCEEECCSSCC----SSCCCGGGGC
T ss_pred CCCCCCCC--cCHHHhccccccccccCCccEEECcCCc-CCc-cChhhhhccCCCcCEEECCCCCC----CCcChhhhcC
Confidence 99998763 11111111 2289999999987 552 233444 899999999999977 4477778899
Q ss_pred CCCceeccccccccCC---CCCccc-ccCCCCCCEEEecCCCC
Q 003957 705 PMLRLVSLDLCDASDG---NFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~---~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
++|+.|++++|+...+ .-.+|. +.++++|++|++++|+.
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 9999999976541110 013576 88999999999999987
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=4.3e-24 Score=253.98 Aligned_cols=153 Identities=14% Similarity=0.027 Sum_probs=99.4
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhC-------CCCCEEEeeCCCCCHHHHH
Q 003957 289 SPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRC-------VKLQSIIVCDTSFGVYSIR 361 (784)
Q Consensus 289 ~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~-------~~L~~L~Ls~~~i~~~~l~ 361 (784)
++++|++|+|++|...+.. +.....+++|++|++++|..++...++.-+.++ ++|+.|++++|.+..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~i--P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~---- 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQL--PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE---- 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCSC--CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB----
T ss_pred cCCCCCEEECcCCCCCccC--hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc----
Confidence 7899999999998644322 222345889999999997645542344433433 589999998888774
Q ss_pred HhhccCCccCcccccccch--hhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCC-c
Q 003957 362 ALCSEVPYCNSSALCGKRN--FNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSS-L 437 (784)
Q Consensus 362 ~l~~~l~~~~~~~~~~~~~--~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~-L 437 (784)
+|. .+..+++|+.|+|++|... .++ .+..+++|+.|++++|.++. ....+. .++ |
T Consensus 563 ----------------ip~~~~l~~L~~L~~L~Ls~N~l~---~lp-~~~~L~~L~~L~Ls~N~l~~-lp~~l~~l~~~L 621 (876)
T 4ecn_A 563 ----------------FPASASLQKMVKLGLLDCVHNKVR---HLE-AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQV 621 (876)
T ss_dssp ----------------CCCHHHHTTCTTCCEEECTTSCCC---BCC-CCCTTSEESEEECCSSCCSC-CCTTSCEECTTC
T ss_pred ----------------cCChhhhhcCCCCCEEECCCCCcc---cch-hhcCCCcceEEECcCCcccc-chHHHhhccccC
Confidence 455 5577888888888887652 222 23677888888888887772 223333 455 8
Q ss_pred CEEEecCCccchhhHHHHHhcC--CCccEEeccCC
Q 003957 438 EMLDVSDTMISGAALAYMVHGN--SGLKYLNARGC 470 (784)
Q Consensus 438 ~~L~Ls~~~i~~~~l~~~~~~l--~~L~~L~L~~c 470 (784)
+.|+|++|.++.. ...+... ++|+.|+++++
T Consensus 622 ~~L~Ls~N~L~~l--p~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 622 EGLGFSHNKLKYI--PNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp CEEECCSSCCCSC--CSCCCTTCSSCEEEEECCSS
T ss_pred CEEECcCCCCCcC--chhhhccccCCCCEEECcCC
Confidence 8888888766522 1222222 34777777665
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=3.5e-23 Score=238.70 Aligned_cols=459 Identities=13% Similarity=0.067 Sum_probs=259.3
Q ss_pred eCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeecC
Q 003957 181 FEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSS 260 (784)
Q Consensus 181 ~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~~ 260 (784)
+...++++++++.-...+. ...++|++|++++ +.++......+ ..+++|++|+|++|.-..++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~------~~~~~L~~L~Ls~-N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~--------- 92 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPK------DLPPRTKALSLSQ-NSISELRMPDI-SFLSELRVLRLSHNRIRSLD--------- 92 (562)
T ss_dssp ---CCEEECTTSCCCSCCT------TSCTTCCEEECCS-SCCCCCCGGGT-TTCTTCCEEECCSCCCCEEC---------
T ss_pred cCCCcEEEcCCCCCccCCC------CCCCCcCEEECCC-CCccccChhhh-ccCCCccEEECCCCCCCcCC---------
Confidence 3444667776653322211 1236677777777 44443222223 36777777777754321110
Q ss_pred CccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHH
Q 003957 261 SALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIR 340 (784)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~ 340 (784)
+.....+++|++|+|++|. ++.. +.. .+++|++|++++|. ++...++..+.
T Consensus 93 -----------------------~~~~~~l~~L~~L~Ls~N~-l~~l--p~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~ 143 (562)
T 3a79_B 93 -----------------------FHVFLFNQDLEYLDVSHNR-LQNI--SCC--PMASLRHLDLSFND-FDVLPVCKEFG 143 (562)
T ss_dssp -----------------------TTTTTTCTTCCEEECTTSC-CCEE--CSC--CCTTCSEEECCSSC-CSBCCCCGGGG
T ss_pred -----------------------HHHhCCCCCCCEEECCCCc-CCcc--Ccc--ccccCCEEECCCCC-ccccCchHhhc
Confidence 1113456777777777764 3321 111 46777777777753 22222223345
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCC--ccEEEecCCCCC-CHHHHHHHHHhCcccc--
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASN--LQMLHMACCNGV-DGMYLLELMCQARKLK-- 415 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~--L~~L~L~~c~~l-~~~~l~~l~~~~~~L~-- 415 (784)
++++|+.|++++|.+....+ ..+++ |+.|++++|... +.... ...+.++
T Consensus 144 ~l~~L~~L~L~~n~l~~~~~----------------------~~l~~L~L~~L~L~~n~l~~~~~~~----~~l~~l~~~ 197 (562)
T 3a79_B 144 NLTKLTFLGLSAAKFRQLDL----------------------LPVAHLHLSCILLDLVSYHIKGGET----ESLQIPNTT 197 (562)
T ss_dssp GCTTCCEEEEECSBCCTTTT----------------------GGGTTSCEEEEEEEESSCCCCSSSC----CEEEECCEE
T ss_pred ccCcccEEecCCCccccCch----------------------hhhhhceeeEEEeecccccccccCc----ccccccCcc
Confidence 67788888888877765222 22333 378887776440 00000 1112211
Q ss_pred --EEEecCCcCchhhhhh-cc-cCCcCEEEecCCccch---hhHHHHHhcCCCccEEeccCCCccccccccccccccCCC
Q 003957 416 --SLCLSGTQLADKALYN-FS-GSSLEMLDVSDTMISG---AALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSY 488 (784)
Q Consensus 416 --~L~Ls~~~l~~~~~~~-l~-~~~L~~L~Ls~~~i~~---~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 488 (784)
.+++++|.+....... +. .++|+.|++++|...- .+....+.++++|+.|.+.++. +.+..+
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~~~~---------- 266 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE-TTWKCS---------- 266 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE-ECHHHH----------
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc-CcHHHH----------
Confidence 3455555443322111 11 3577777777764211 1112233567777777776542 221111
Q ss_pred CchhhHHhhhcCCCccEEEec-cccC-cccHhhh---hhhcCcccEEEecCCC-CCChHHHHHhhccCCCCcEEEeeeec
Q 003957 489 PCADLFAELGRTRKLEEIVLG-WGFS-FLSLEVL---KPAIKLLHSITVGLGG-SLGEDALRLLPTTCPMLELVVLYFQV 562 (784)
Q Consensus 489 ~~~~~~~~l~~l~~L~~L~L~-~~~~-~~~~~~~---~~~l~~L~~L~L~~~~-~l~~~~l~~l~~~~~~L~~L~L~~~~ 562 (784)
..++..+ ..++|++|+++ +.+. .++...+ .+.+..|+.+++..+. .+++..+..+.. .++|++|+++.+.
T Consensus 267 --~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~-~~~L~~L~l~~n~ 342 (562)
T 3a79_B 267 --VKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMNIKMLSISDTP 342 (562)
T ss_dssp --HHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH-TCCCSEEEEESSC
T ss_pred --HHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc-cCcceEEEccCCC
Confidence 1111111 23477777773 3333 1111110 1334444444554442 233333333322 3579999998777
Q ss_pred cChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChH-HHHHHHhcCCCCcEEEecCCCCC
Q 003957 563 MSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNN-DLVILTQNCSELVELSLVGCTLL 640 (784)
Q Consensus 563 i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~-~l~~l~~~~~~L~~L~Ls~c~~~ 640 (784)
+..... ...+++|++|++++| +.+..+.. ...+++|++|++++ +.++.. .+...+.++++|++|++++|...
T Consensus 343 ~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~--N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 343 FIHMVC---PPSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQR--NGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp CCCCCC---CSSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCS--SCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cccccC---ccCCCCceEEECCCCccccchhhh-hcccCCCCEEECCC--CCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 765321 256789999999998 34323333 34668999999999 467653 34445668899999999999875
Q ss_pred ChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCC-CCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccC
Q 003957 641 SSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNC-IALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASD 719 (784)
Q Consensus 641 ~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~-~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~ 719 (784)
.... .....++++|+.|++++|. ++...+. .+ ++|+.|++++|.+ ..++..+..+++|+.|++++|...
T Consensus 417 ~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~---~l~~~L~~L~L~~N~l----~~ip~~~~~l~~L~~L~L~~N~l~- 486 (562)
T 3a79_B 417 SHAY-DRTCAWAESILVLNLSSNM-LTGSVFR---CLPPKVKVLDLHNNRI----MSIPKDVTHLQALQELNVASNQLK- 486 (562)
T ss_dssp SCCS-SCCCCCCTTCCEEECCSSC-CCGGGGS---SCCTTCSEEECCSSCC----CCCCTTTTSSCCCSEEECCSSCCC-
T ss_pred CccC-hhhhcCcccCCEEECCCCC-CCcchhh---hhcCcCCEEECCCCcC----cccChhhcCCCCCCEEECCCCCCC-
Confidence 4111 1123457999999999987 6543222 33 6999999999977 556666668999999999998776
Q ss_pred CCCCccc--ccCCCCCCEEEecCCCCcC
Q 003957 720 GNFEIPD--YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 720 ~~~~l~~--~~~~~~L~~L~is~C~~~~ 745 (784)
.+|. +..+++|+.|++++|+-..
T Consensus 487 ---~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 487 ---SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp ---CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred ---CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 4565 7889999999999998553
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=6.2e-22 Score=222.07 Aligned_cols=353 Identities=15% Similarity=0.073 Sum_probs=246.8
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
++|++|++++|.++.. .|..+..+++|++|++++|........ ..+..+++|+.|++++|
T Consensus 30 ~~l~~L~Ls~n~i~~~-------------------~~~~~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-------------------NETSFSRLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTCCEEECCSSCCCEE-------------------CTTTTSSCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTC
T ss_pred CccCEEEecCCccCcC-------------------ChhHhccCccccEEECcCCcccceECc-ccccccccCCEEeCCCC
Confidence 5678888888877651 234457899999999999865321111 12367899999999999
Q ss_pred cCchhhhhhcc-cCCcCEEEecCCccchhhHHH-HHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcC
Q 003957 423 QLADKALYNFS-GSSLEMLDVSDTMISGAALAY-MVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRT 500 (784)
Q Consensus 423 ~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~-~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 500 (784)
.++......|. .++|++|++++|.+++..+.. .+..+++|++|+++++. ++..... ..+..+
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------------~~~~~l 153 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPA---------------SFFLNM 153 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCC---------------GGGGGC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcc---------------cccCCC
Confidence 98877766666 689999999999987654432 24688999999998874 3321100 126678
Q ss_pred CCccEEEec-cccCcccHhhhhhhc--CcccEEEecCCCCC--ChH-----HHHHhhccCCCCcEEEeeeeccChHHHHH
Q 003957 501 RKLEEIVLG-WGFSFLSLEVLKPAI--KLLHSITVGLGGSL--GED-----ALRLLPTTCPMLELVVLYFQVMSDSIIIN 570 (784)
Q Consensus 501 ~~L~~L~L~-~~~~~~~~~~~~~~l--~~L~~L~L~~~~~l--~~~-----~l~~l~~~~~~L~~L~L~~~~i~~~~l~~ 570 (784)
++|++|+++ +.+....... +..+ .+|+.|+++++... ... ....+ ..+++|++|+++.+.+++.....
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT-TTTCEEEEEECTTSCCCHHHHHH
T ss_pred CcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhccccccccc-cccceeeeEecCCCcccccchhh
Confidence 899999994 4454443332 2233 57899999987321 111 11111 12578999999999998876555
Q ss_pred HHhh--CCCCcEEEecccCC-hh----------HHHHh-hcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecC
Q 003957 571 ILES--LRRLQVLAICHCLG-DL----------SISSF-KLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVG 636 (784)
Q Consensus 571 ~~~~--l~~L~~L~Ls~c~~-~~----------~~~~l-~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~ 636 (784)
+... .++|+.|++++|.. .. ....+ ....++|++|+++++ .++... ...+..+++|++|++++
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~-~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS--KIFALL-KSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS--CCCEEC-TTTTTTCTTCCEEECTT
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc--cccccc-hhhcccCCCCCEEECCC
Confidence 4443 37999999998721 10 00011 112368999999995 565432 23346789999999999
Q ss_pred CCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccc
Q 003957 637 CTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 637 c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~ 716 (784)
|.+.... .....++++|+.|+|++|. ++...+..+.++++|+.|++++|.+ . ...+..+..+++|++|++++|.
T Consensus 309 n~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 309 NEINKID--DNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHI--R-ALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp SCCCEEC--TTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCC--C-EECTTTTTTCTTCCEEECCSSC
T ss_pred CcccccC--hhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCcc--c-ccChhhccccccccEEECCCCc
Confidence 9876421 1123468999999999987 6666566777899999999999976 4 4456778899999999999987
Q ss_pred ccCCCCCccc--ccCCCCCCEEEecCCCCcCc
Q 003957 717 ASDGNFEIPD--YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 717 ~~~~~~~l~~--~~~~~~L~~L~is~C~~~~~ 746 (784)
.. .+|. +..+++|++|++++|+....
T Consensus 383 l~----~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 383 LK----SVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CS----CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cc----cCCHhHhccCCcccEEEccCCCcccC
Confidence 66 4455 78999999999999986544
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=3.9e-21 Score=216.20 Aligned_cols=339 Identities=17% Similarity=0.121 Sum_probs=244.3
Q ss_pred CCCCCeEecCCCCccCHHHHHHHHHh---CCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEE
Q 003957 316 CVSLGYINIKGCVSVTDVCISNLIRR---CVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLH 392 (784)
Q Consensus 316 ~~~L~~L~L~~c~~l~~~~l~~l~~~---~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~ 392 (784)
++++++|++.++.. + . +.. +++|++|++++|.+.. ++. +..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i-~-----~-l~~~~~l~~L~~L~Ls~n~l~~--------------------~~~-~~~l~~L~~L~ 96 (466)
T 1o6v_A 45 LDQVTTLQADRLGI-K-----S-IDGVEYLNNLTQINFSNNQLTD--------------------ITP-LKNLTKLVDIL 96 (466)
T ss_dssp HHTCCEEECCSSCC-C-----C-CTTGGGCTTCCEEECCSSCCCC--------------------CGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCC-c-----c-CcchhhhcCCCEEECCCCccCC--------------------chh-hhccccCCEEE
Confidence 34788888877532 1 1 222 4788888888887765 333 47788889999
Q ss_pred ecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCC
Q 003957 393 MACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCK 471 (784)
Q Consensus 393 L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~ 471 (784)
+++|....... ...+++|+.|++++|.+++... +. .++|++|++++|.++... .+..+++|++|.+.+.
T Consensus 97 l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~~- 166 (466)
T 1o6v_A 97 MNNNQIADITP----LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFGNQ- 166 (466)
T ss_dssp CCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEEES-
T ss_pred CCCCccccChh----hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh---hhccCCcccEeecCCc-
Confidence 98886533222 3778888999998887776543 33 588899999888766543 1467888888888532
Q ss_pred ccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccC
Q 003957 472 NLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTC 550 (784)
Q Consensus 472 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~ 550 (784)
+... ..+..+++|++|+++ +.+.... .+..+++|+.|+++++. +.+.. .++ .+
T Consensus 167 -~~~~------------------~~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~--~~~-~l 220 (466)
T 1o6v_A 167 -VTDL------------------KPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQ-ISDIT--PLG-IL 220 (466)
T ss_dssp -CCCC------------------GGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSC-CCCCG--GGG-GC
T ss_pred -ccCc------------------hhhccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCCc-ccccc--ccc-cc
Confidence 2110 136778999999994 4444432 36678899999999884 32211 133 37
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++|+.|+++.+.+++.+ .+..+++|+.|++++|. .+... ...+++|++|++++| .++.... ...+++|
T Consensus 221 ~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n--~l~~~~~---~~~l~~L 289 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGAN--QISNISP---LAGLTAL 289 (466)
T ss_dssp TTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSS--CCCCCGG---GTTCTTC
T ss_pred CCCCEEECCCCCcccch---hhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCC--ccCcccc---ccCCCcc
Confidence 89999999888887642 36789999999999993 32221 446699999999995 5654332 5678999
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCce
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRL 709 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~ 709 (784)
++|++++|....... ...+++|+.|++++|. ++...+ +..+++|+.|++++|.+ . .+ ..+..+++|+.
T Consensus 290 ~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l--~--~~-~~l~~l~~L~~ 357 (466)
T 1o6v_A 290 TNLELNENQLEDISP----ISNLKNLTYLTLYFNN-ISDISP--VSSLTKLQRLFFYNNKV--S--DV-SSLANLTNINW 357 (466)
T ss_dssp SEEECCSSCCSCCGG----GGGCTTCSEEECCSSC-CSCCGG--GGGCTTCCEEECCSSCC--C--CC-GGGTTCTTCCE
T ss_pred CeEEcCCCcccCchh----hcCCCCCCEEECcCCc-CCCchh--hccCccCCEeECCCCcc--C--Cc-hhhccCCCCCE
Confidence 999999998766322 3579999999999997 544332 56899999999999976 3 22 45788999999
Q ss_pred eccccccccCCCCCcccccCCCCCCEEEecCCCCcC
Q 003957 710 VSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 710 L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~~~ 745 (784)
|++++|+.. +.+++..+++|+.|++++|+..+
T Consensus 358 L~l~~n~l~----~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 358 LSAGHNQIS----DLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCC----BCGGGTTCTTCCEEECCCEEEEC
T ss_pred EeCCCCccC----ccchhhcCCCCCEEeccCCcccC
Confidence 999998776 33448889999999999997544
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.4e-22 Score=237.16 Aligned_cols=467 Identities=14% Similarity=0.047 Sum_probs=245.5
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+++|++|+|++|.-...+. ..+..+++|++|++++ +.++.... ..+..+++|++|+|+.+....++..
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~---~~f~~L~~L~~L~Ls~-N~l~~l~~-~~f~~L~~L~~L~Ls~N~l~~l~~~------ 142 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILTG-NPIQSLAL-GAFSGLSSLQKLVAVETNLASLENF------ 142 (635)
T ss_dssp TCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECTT-CCCCEECG-GGGTTCTTCCEEECTTSCCCCSTTC------
T ss_pred CCCCCCEEECCCCcCCCcCh---hHhcCCCCCCEEEccC-CcCCCCCH-HHhcCCCCCCEEECCCCcCCCCChh------
Confidence 35667777777764221100 1134567777777777 34443222 2233677777777775543222211
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCc--cCHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVS--VTDVCISN 337 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~--l~~~~l~~ 337 (784)
...++++|++|+|++|.. +..........+++|++|+++++.. +....+..
T Consensus 143 --------------------------~~~~L~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 143 --------------------------PIGHLKTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp --------------------------CCTTCTTCCEEECCSSCC-CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred --------------------------hhhcCcccCeeccccCcc-ccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 134567777777777642 2211222233466777777776532 11222222
Q ss_pred HHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEE
Q 003957 338 LIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSL 417 (784)
Q Consensus 338 l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L 417 (784)
+.........++++.+.+.. ++........++.+++.++.. ...........++.++..
T Consensus 196 L~~l~~~~~~~~ls~n~l~~--------------------i~~~~~~~~~~~~l~l~~n~~-~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNF--------------------IQPGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCE--------------------ECTTTTTTCEEEEEEEESCCS-SHHHHHHHHHTTTTCEEE
T ss_pred hhhhhhhhhhhhcccCcccc--------------------cCcccccchhhhhhhhhcccc-cccccchhhcCCcccccc
Confidence 22222334456666665543 111112233445556555432 122222233455555544
Q ss_pred EecCCc------Cchhhh---------------------------hhcc-cCCcCEEEecCCccchhhHHHHHhcCCCcc
Q 003957 418 CLSGTQ------LADKAL---------------------------YNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLK 463 (784)
Q Consensus 418 ~Ls~~~------l~~~~~---------------------------~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~ 463 (784)
.+.... +..... ..+. ..+++.+++.++.+..... .....+|+
T Consensus 255 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~~L~ 331 (635)
T 4g8a_A 255 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQ 331 (635)
T ss_dssp EEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---GGSCCCCS
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc---cccchhhh
Confidence 443211 100000 0111 2355555555553322111 13445666
Q ss_pred EEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEecc-ccCcccHhhhhhhcCcccEEEecCCCCCChHH
Q 003957 464 YLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGW-GFSFLSLEVLKPAIKLLHSITVGLGGSLGEDA 542 (784)
Q Consensus 464 ~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 542 (784)
.|++.++.. ... ....+..|+.+.+.. ...... ....+++|+.++++.+.......
T Consensus 332 ~L~l~~~~~-~~~-------------------~~~~l~~L~~l~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 332 HLELVNCKF-GQF-------------------PTLKLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp EEEEESCEE-SSC-------------------CCCBCTTCCEEEEESCCSCCBC---CCCBCTTCCEEECCSSCCBEEEE
T ss_pred hhhcccccc-cCc-------------------CcccchhhhhcccccccCCCCc---ccccccccccchhhccccccccc
Confidence 666655421 110 001234556666522 111110 11235677777777663211000
Q ss_pred HHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHH
Q 003957 543 LRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVI 621 (784)
Q Consensus 543 l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~ 621 (784)
.........+|+.+++..+.+.. ....+..+++|+.+++..+ ............+++++.++++.+ .+... ...
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n--~l~~~-~~~ 463 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVA-FNG 463 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEE--ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS--CCEEC-CTT
T ss_pred cccchhhhhhhhhhhcccccccc--ccccccccccccchhhhhcccccccccccccccccccccccccc--ccccc-ccc
Confidence 00011135667887775443322 1122456778888888776 222222223345678888888884 34321 122
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHH
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAA 701 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l 701 (784)
....++.|+.|++++|....... .....++++|+.|+|++|+ ++...+..+.++++|++|+|++|.+ . ...+..+
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~-~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N~l--~-~l~~~~~ 538 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNF--F-SLDTFPY 538 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCC--C-BCCCGGG
T ss_pred ccccchhhhhhhhhhcccccccC-chhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCCcC--C-CCChhHH
Confidence 34567899999999987543211 1123468899999999986 7666566677899999999999976 4 4445568
Q ss_pred hcCCCCceeccccccccCCCCCccc-ccCC-CCCCEEEecCCCCc
Q 003957 702 SKMPMLRLVSLDLCDASDGNFEIPD-YADR-YSLSTVKITKCKSK 744 (784)
Q Consensus 702 ~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~-~~L~~L~is~C~~~ 744 (784)
.++++|+.|+|++|... +. .|. +..+ ++|++|++++|+-.
T Consensus 539 ~~l~~L~~L~Ls~N~l~-~~--~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIM-TS--KKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTCTTCCEEECTTSCCC-BC--CSSCTTCCCTTCCEEECTTCCBC
T ss_pred hCCCCCCEEECCCCcCC-CC--CHHHHHhhhCcCCEEEeeCCCCc
Confidence 88999999999998776 21 233 6666 68999999987743
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.9e-22 Score=235.94 Aligned_cols=422 Identities=14% Similarity=0.003 Sum_probs=231.0
Q ss_pred CCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 288 PSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 288 ~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
..+++|++|+|++|. ++.... ....++++|++|++++|.. +... ...+.++++|+.|++++|.+...
T Consensus 97 ~~L~~L~~L~Ls~N~-l~~l~~-~~f~~L~~L~~L~Ls~N~l-~~l~-~~~~~~L~~L~~L~Ls~N~l~~~--------- 163 (635)
T 4g8a_A 97 QSLSHLSTLILTGNP-IQSLAL-GAFSGLSSLQKLVAVETNL-ASLE-NFPIGHLKTLKELNVAHNLIQSF--------- 163 (635)
T ss_dssp TTCTTCCEEECTTCC-CCEECG-GGGTTCTTCCEEECTTSCC-CCST-TCCCTTCTTCCEEECCSSCCCCC---------
T ss_pred cCCCCCCEEEccCCc-CCCCCH-HHhcCCCCCCEEECCCCcC-CCCC-hhhhhcCcccCeeccccCccccC---------
Confidence 345566666666553 222111 1122355666666666432 1110 01134677888888888876541
Q ss_pred CccCcccccccchhhhcCCCccEEEecCCCC--CCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCC
Q 003957 368 PYCNSSALCGKRNFNTLASNLQMLHMACCNG--VDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDT 445 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~ 445 (784)
..|..+..+++|++|++++|.. +....+..+.........++++.+.++......+....++.+++.++
T Consensus 164 ---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 164 ---------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp ---------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred ---------CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence 1344557788888888888754 22333433422333455788888877766655555667788888888
Q ss_pred ccchhhHHHHHhcCCCccEEeccCCCc-----cccccccccc-----------cccCCCCchhhHHhhhcCCCccEEEec
Q 003957 446 MISGAALAYMVHGNSGLKYLNARGCKN-----LFQQESNGRG-----------IEFSSYPCADLFAELGRTRKLEEIVLG 509 (784)
Q Consensus 446 ~i~~~~l~~~~~~l~~L~~L~L~~c~~-----l~~~~~~~~~-----------~~~~~~~~~~~~~~l~~l~~L~~L~L~ 509 (784)
..........+.+++.++...+..... +......... ..............+.....++.+.+.
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 314 (635)
T 4g8a_A 235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV 314 (635)
T ss_dssp CSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE
T ss_pred cccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc
Confidence 666555555566777777665532111 1100000000 000000000111122223334444441
Q ss_pred -cccCcccHhhhhhhcCcccEEEecCCCC--CChHHHHH---------------hhccCCCCcEEEeeeeccChHH-HHH
Q 003957 510 -WGFSFLSLEVLKPAIKLLHSITVGLGGS--LGEDALRL---------------LPTTCPMLELVVLYFQVMSDSI-IIN 570 (784)
Q Consensus 510 -~~~~~~~~~~~~~~l~~L~~L~L~~~~~--l~~~~l~~---------------l~~~~~~L~~L~L~~~~i~~~~-l~~ 570 (784)
....... -+....+|+.|++.++.. +....+.. -...+++|+.|+++.+.+...+ ...
T Consensus 315 ~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 315 SVTIERVK---DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp SCEEEECG---GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred cccccccc---ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccccc
Confidence 1111110 012233444554444310 00000000 0012566777777655543221 122
Q ss_pred HHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHh
Q 003957 571 ILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQ 650 (784)
Q Consensus 571 ~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~ 650 (784)
....+.+|+.+++..+....... ....+++|+.+++.++ + .........+..+++++.+++++|..... ......
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~~L~~l~l~~~-~-~~~~~~~~~~~~l~~l~~l~ls~n~l~~~--~~~~~~ 466 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHS-N-LKQMSEFSVFLSLRNLIYLDISHTHTRVA--FNGIFN 466 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEEECS-CCTTCTTCCEEECTTS-E-EESTTSSCTTTTCTTCCEEECTTSCCEEC--CTTTTT
T ss_pred chhhhhhhhhhhccccccccccc-cccccccccchhhhhc-c-ccccccccccccccccccccccccccccc--cccccc
Confidence 23456677777777662111111 1234578888888775 2 22111122345678999999999876431 122335
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--cc
Q 003957 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YA 728 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~ 728 (784)
+++.|+.|++++|.......+..+..+++|++|+|++|.+ . ...+..++++++|++|+|++|... .++. +.
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L--~-~l~~~~f~~l~~L~~L~Ls~N~l~----~l~~~~~~ 539 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--E-QLSPTAFNSLSSLQVLNMSHNNFF----SLDTFPYK 539 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC--C-EECTTTTTTCTTCCEEECTTSCCC----BCCCGGGT
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc--C-CcChHHHcCCCCCCEEECCCCcCC----CCChhHHh
Confidence 6899999999998744433334566899999999999976 5 555677899999999999998765 3444 88
Q ss_pred CCCCCCEEEecCCCCcCc
Q 003957 729 DRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 729 ~~~~L~~L~is~C~~~~~ 746 (784)
.+++|++|++++|+....
T Consensus 540 ~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp TCTTCCEEECTTSCCCBC
T ss_pred CCCCCCEEECCCCcCCCC
Confidence 999999999999986443
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=2.2e-20 Score=201.59 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=91.3
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+++|+.|+++.+.+++... +..+++|++|++++| ..+... ...+++|++|++++| .++... .+..+++
T Consensus 198 l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n--~l~~~~---~~~~l~~ 266 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTN--QISDIN---AVKDLTK 266 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS--CCCCCG---GGTTCTT
T ss_pred CCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCC--ccCCCh---hHhcCCC
Confidence 4455555555554444321 455666666666666 222111 334567777777774 454421 2446778
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
|++|++++|....- . ....+++|+.|++++|. ++...+..+.++++|+.|++++|.+ . .+.. +..+++|+
T Consensus 267 L~~L~l~~n~l~~~---~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l--~--~~~~-~~~l~~L~ 336 (347)
T 4fmz_A 267 LKMLNVGSNQISDI---S-VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHI--T--DIRP-LASLSKMD 336 (347)
T ss_dssp CCEEECCSSCCCCC---G-GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSSC--C--CCGG-GGGCTTCS
T ss_pred cCEEEccCCccCCC---h-hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCcc--c--cccC-hhhhhccc
Confidence 88888888766552 1 23467888888888876 6666677777888888888888865 3 2222 77788888
Q ss_pred eeccccccc
Q 003957 709 LVSLDLCDA 717 (784)
Q Consensus 709 ~L~L~~c~~ 717 (784)
.|++++|+.
T Consensus 337 ~L~l~~N~i 345 (347)
T 4fmz_A 337 SADFANQVI 345 (347)
T ss_dssp EESSSCC--
T ss_pred eeehhhhcc
Confidence 888888764
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=2.1e-21 Score=223.78 Aligned_cols=392 Identities=13% Similarity=0.082 Sum_probs=238.4
Q ss_pred CCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhcc
Q 003957 287 GPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSE 366 (784)
Q Consensus 287 ~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~ 366 (784)
...+++|++|+|++|. ++......+ ..+++|++|+++++. ++.. +.. .+++|++|++++|.++...
T Consensus 72 ~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l--p~~--~l~~L~~L~Ls~N~l~~l~------- 137 (562)
T 3a79_B 72 ISFLSELRVLRLSHNR-IRSLDFHVF-LFNQDLEYLDVSHNR-LQNI--SCC--PMASLRHLDLSFNDFDVLP------- 137 (562)
T ss_dssp TTTCTTCCEEECCSCC-CCEECTTTT-TTCTTCCEEECTTSC-CCEE--CSC--CCTTCSEEECCSSCCSBCC-------
T ss_pred hccCCCccEEECCCCC-CCcCCHHHh-CCCCCCCEEECCCCc-CCcc--Ccc--ccccCCEEECCCCCccccC-------
Confidence 3567888888888874 333222222 347788888888754 3321 111 5778888888888775411
Q ss_pred CCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccc--cEEEecCCcC--chhhhhhcccCC--cCEE
Q 003957 367 VPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKL--KSLCLSGTQL--ADKALYNFSGSS--LEML 440 (784)
Q Consensus 367 l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L--~~L~Ls~~~l--~~~~~~~l~~~~--L~~L 440 (784)
.|..+..+++|++|+++++... ...+ ..+++| +.|++++|.+ +......+..-. .-.+
T Consensus 138 -----------~p~~~~~l~~L~~L~L~~n~l~-~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 138 -----------VCKEFGNLTKLTFLGLSAAKFR-QLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp -----------CCGGGGGCTTCCEEEEECSBCC-TTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred -----------chHhhcccCcccEEecCCCccc-cCch----hhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 2244577788888888876542 2222 344555 8888888776 444444443211 2244
Q ss_pred EecCCccchhhHHHHHhcCCCccEEeccCCCc-cccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHh
Q 003957 441 DVSDTMISGAALAYMVHGNSGLKYLNARGCKN-LFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLE 518 (784)
Q Consensus 441 ~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~ 518 (784)
++++|.+...........+++|+.++++++.. ... .......+..++.|+.+++. ..++.....
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--------------l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR--------------LMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH--------------HHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccch--------------HHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 66666543322111223567788888766421 000 12234466778888888883 333322222
Q ss_pred hhhh--hcCcccEEEecCCCCCChHHHHHhhccC-----CCCcEEEe---eeecc--ChHHHHHHHhhCCCCcEEEeccc
Q 003957 519 VLKP--AIKLLHSITVGLGGSLGEDALRLLPTTC-----PMLELVVL---YFQVM--SDSIIINILESLRRLQVLAICHC 586 (784)
Q Consensus 519 ~~~~--~l~~L~~L~L~~~~~l~~~~l~~l~~~~-----~~L~~L~L---~~~~i--~~~~l~~~~~~l~~L~~L~Ls~c 586 (784)
...+ ...+|+.|+++++. +.+ .++... ++|+.|.+ ..+.+ .+..+..++. ..+|++|++++|
T Consensus 268 ~~~~~~~~~~L~~L~l~~n~-l~~----~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~-~~~L~~L~l~~n 341 (562)
T 3a79_B 268 KLFQFFWPRPVEYLNIYNLT-ITE----RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHTTSSEEEEEEEEEE-ECS----CCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH-TCCCSEEEEESS
T ss_pred HHHHhhhcccccEEEEeccE-eec----cccchhhhcccccchheehhhcccceeecChhhhhhhhc-cCcceEEEccCC
Confidence 2222 23489999998873 211 111111 45666655 33333 2233333333 357999999998
Q ss_pred C-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCC
Q 003957 587 L-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGD 665 (784)
Q Consensus 587 ~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 665 (784)
. .... +...+++|++|+++++ .++.... ..+.++++|++|++++|....-........++++|+.|++++|.
T Consensus 342 ~~~~~~---~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~- 414 (562)
T 3a79_B 342 PFIHMV---CPPSPSSFTFLNFTQN--VFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS- 414 (562)
T ss_dssp CCCCCC---CCSSCCCCCEEECCSS--CCCTTTT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-
T ss_pred Cccccc---CccCCCCceEEECCCC--ccccchh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-
Confidence 3 2111 1146789999999994 6765222 23457899999999999876532333334578999999999987
Q ss_pred CCH-HHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC-CCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCC
Q 003957 666 ITA-YGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKM-PMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCK 742 (784)
Q Consensus 666 i~~-~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l-~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~ 742 (784)
++. .....+..+++|+.|++++|.+ . ..+ ...+ ++|+.|++++|... .+|. +..+++|++|++++|+
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l--~-~~~---~~~l~~~L~~L~L~~N~l~----~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNML--T-GSV---FRCLPPKVKVLDLHNNRIM----SIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCC--C-GGG---GSSCCTTCSEEECCSSCCC----CCCTTTTSSCCCSEEECCSSC
T ss_pred CCCccChhhhcCcccCCEEECCCCCC--C-cch---hhhhcCcCCEEECCCCcCc----ccChhhcCCCCCCEEECCCCC
Confidence 543 2223355789999999999975 4 322 3344 69999999998665 5677 6699999999999998
Q ss_pred CcC
Q 003957 743 SKN 745 (784)
Q Consensus 743 ~~~ 745 (784)
...
T Consensus 485 l~~ 487 (562)
T 3a79_B 485 LKS 487 (562)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=2.7e-20 Score=210.09 Aligned_cols=300 Identities=15% Similarity=0.050 Sum_probs=160.1
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCcc
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLK 463 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~ 463 (784)
.++++.|+|+++..- ..... .+..+++|+.|+|++|.+++.....|. .++|++|+|++|.++..... .+.++++|+
T Consensus 31 ~~~l~~L~L~~n~l~-~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKNRIK-TLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG-VFTGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSSCCC-EECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT-SSTTCTTCC
T ss_pred CCCCcEEECCCCccc-eECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc-cccCCCCCC
Confidence 468999999987642 21111 236789999999999988877666666 58899999999877654332 235788999
Q ss_pred EEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHH
Q 003957 464 YLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDA 542 (784)
Q Consensus 464 ~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 542 (784)
+|+++++.. .... ...+..+++|++|+++ +.+...... .+..+++|+.|+++++ .++...
T Consensus 108 ~L~Ls~n~i-~~~~----------------~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~ 168 (477)
T 2id5_A 108 KLDISENKI-VILL----------------DYMFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKC-NLTSIP 168 (477)
T ss_dssp EEECTTSCC-CEEC----------------TTTTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESC-CCSSCC
T ss_pred EEECCCCcc-ccCC----------------hhHccccccCCEEECCCCccceeChh-hccCCCCCCEEECCCC-cCcccC
Confidence 999987632 2211 1144566777777773 334333322 2445666777777666 222211
Q ss_pred HHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHH
Q 003957 543 LRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVI 621 (784)
Q Consensus 543 l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~ 621 (784)
...+. .+++|+.|+++.+.++... ...+..+++|+.|++++|. .+....... ...+|++|++++| .++.... .
T Consensus 169 ~~~l~-~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n--~l~~~~~-~ 242 (477)
T 2id5_A 169 TEALS-HLHGLIVLRLRHLNINAIR-DYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHC--NLTAVPY-L 242 (477)
T ss_dssp HHHHT-TCTTCCEEEEESCCCCEEC-TTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESS--CCCSCCH-H
T ss_pred hhHhc-ccCCCcEEeCCCCcCcEeC-hhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCC--cccccCH-H
Confidence 12222 2556666666655554421 1124455566666666551 111111111 1235666666653 3442221 1
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHH
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAA 701 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l 701 (784)
.+.++++|+.|++++|.+.... .....++++|+.|+|++|. ++...+..+.++++|+.|++++|.+ . ......+
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~~~~~ 316 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIE--GSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQL--T-TLEESVF 316 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEEC--TTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCC--S-CCCGGGB
T ss_pred HhcCccccCeeECCCCcCCccC--hhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcC--c-eeCHhHc
Confidence 2334555666666655543211 1111335556666665554 4433333444555566666665543 2 2222334
Q ss_pred hcCCCCceecccccccc
Q 003957 702 SKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 702 ~~l~~L~~L~L~~c~~~ 718 (784)
..+++|+.|++++|+..
T Consensus 317 ~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 317 HSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCGGGCCEEECCSSCEE
T ss_pred CCCcccCEEEccCCCcc
Confidence 45555555655555543
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=8.4e-20 Score=203.99 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=64.8
Q ss_pred CCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCC
Q 003957 598 PLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNC 677 (784)
Q Consensus 598 ~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~ 677 (784)
.+++|+.|++++| ..+.... ...++|+.|++++| ++|+.|++++|. ++.. .+.++
T Consensus 284 ~l~~L~~L~Ls~n-~~l~~l~-----~~~~~L~~L~l~~~---------------~~L~~L~L~~N~-l~~l---~l~~l 338 (457)
T 3bz5_A 284 GCRKIKELDVTHN-TQLYLLD-----CQAAGITELDLSQN---------------PKLVYLYLNNTE-LTEL---DVSHN 338 (457)
T ss_dssp TCTTCCCCCCTTC-TTCCEEE-----CTTCCCSCCCCTTC---------------TTCCEEECTTCC-CSCC---CCTTC
T ss_pred ccccCCEEECCCC-cccceec-----cCCCcceEechhhc---------------ccCCEEECCCCc-cccc---ccccC
Confidence 4577777777775 3322211 13456666666654 578889988876 5432 26688
Q ss_pred CCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEecCCCC
Q 003957 678 IALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKS 743 (784)
Q Consensus 678 ~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~ 743 (784)
++|+.|++++|.+ + +++.|..|.+..+... +. +.+..|+.++++++..
T Consensus 339 ~~L~~L~l~~N~l--~---------~l~~L~~L~l~~n~l~-g~------~~~~~l~~l~l~~N~l 386 (457)
T 3bz5_A 339 TKLKSLSCVNAHI--Q---------DFSSVGKIPALNNNFE-AE------GQTITMPKETLTNNSL 386 (457)
T ss_dssp TTCSEEECCSSCC--C---------BCTTGGGSSGGGTSEE-EE------EEEEECCCBCCBTTBE
T ss_pred CcCcEEECCCCCC--C---------CccccccccccCCcEE-ec------ceeeecCccccccCcE
Confidence 8999999999865 3 2567777777665443 21 2334667777777763
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.8e-20 Score=209.25 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCCceeccccccccCCCCCcccccCCCCCCEEEecCCCC
Q 003957 705 PMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKS 743 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~ 743 (784)
++|+.|++++|+.. ++|.++ .+++.|++.+|..
T Consensus 396 ~~L~~L~ls~N~l~----~~~~iP--~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 396 QNLKQLHVETNPLR----EFPDIP--ESVEDLRMNSERV 428 (454)
T ss_dssp ---------------------------------------
T ss_pred CcCCEEECCCCcCC----ccccch--hhHhheeCcCccc
Confidence 66777777776655 222222 4566666666653
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=2e-19 Score=201.69 Aligned_cols=304 Identities=13% Similarity=0.087 Sum_probs=197.9
Q ss_pred CccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCC
Q 003957 411 ARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYP 489 (784)
Q Consensus 411 ~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~ 489 (784)
.++|++|++++|.+++.....|. .++|++|++++|.+........+.++++|++|+++++. ++...
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~------------ 95 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLE------------ 95 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEEC------------
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccC------------
Confidence 37899999999999887776676 68999999999976533222334688999999999874 33221
Q ss_pred chhhHHhhhcCCCccEEEec-cccCcc-cHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH
Q 003957 490 CADLFAELGRTRKLEEIVLG-WGFSFL-SLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI 567 (784)
Q Consensus 490 ~~~~~~~l~~l~~L~~L~L~-~~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~ 567 (784)
...+..+++|++|+++ +.+... .....+..+++|+.|+++++. +.......+...+++|++|+++.|.+++..
T Consensus 96 ----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 96 ----TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp ----TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred ----hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccC
Confidence 2256778999999995 444432 233446778999999999983 332211221234789999999887776532
Q ss_pred HHHHHhhC--CCCcEEEecccC-ChhHHH-------HhhcCCCCccEEEccCCCCCCChHHHHHHHh-------------
Q 003957 568 IINILESL--RRLQVLAICHCL-GDLSIS-------SFKLPLPNLRKLKLERVTPWMTNNDLVILTQ------------- 624 (784)
Q Consensus 568 l~~~~~~l--~~L~~L~Ls~c~-~~~~~~-------~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~------------- 624 (784)
... +..+ .+|+.|++++|. .+.... .-...+++|++|+++++ .++......+..
T Consensus 171 ~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 171 EED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN--GFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp TTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS--CCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred hhh-hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC--cccccchhhhhccccccceeeEeec
Confidence 211 2222 344555555441 110000 00112244555555552 343322222211
Q ss_pred -------------------------cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 625 -------------------------NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 625 -------------------------~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
.+++|+.|++++|..... .......+++|+.|++++|. ++...+..+.++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL--LKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTH 324 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE--CTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCcccccc--chhhcccCCCCCEEECCCCc-ccccChhHhcCccc
Confidence 235788888888876542 11223568899999999887 66555556778999
Q ss_pred CCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCc-cc-ccCCCCCCEEEecCCCCcC
Q 003957 680 LEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEI-PD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 680 L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l-~~-~~~~~~L~~L~is~C~~~~ 745 (784)
|+.|++++|.+ + ...+..+..+++|++|++++|... .+ |. +..+++|++|++++|....
T Consensus 325 L~~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 325 LLKLNLSQNFL--G-SIDSRMFENLDKLEVLDLSYNHIR----ALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp CCEEECCSSCC--C-EECGGGGTTCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCEEECCCCcc--C-CcChhHhcCcccCCEEECCCCccc----ccChhhccccccccEEECCCCcccc
Confidence 99999999965 4 445667888999999999998765 23 44 8889999999999987654
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=1e-19 Score=199.62 Aligned_cols=310 Identities=15% Similarity=0.082 Sum_probs=223.6
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCc
Q 003957 384 LASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGL 462 (784)
Q Consensus 384 ~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L 462 (784)
.+++++.|+++++.. +... ..++..+++|+.|++++|.+++.....|. .++|++|++++|.++...... +.++++|
T Consensus 43 ~l~~l~~l~l~~~~l-~~l~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-RKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEE-SEEC-THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTC
T ss_pred ccCCceEEEecCCch-hhCC-hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH-hcCCCCC
Confidence 467899999998753 2111 12347889999999999998877766666 689999999999877654332 3688999
Q ss_pred cEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChH
Q 003957 463 KYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGED 541 (784)
Q Consensus 463 ~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 541 (784)
++|+++++ .++.... ..+..+++|++|+++ +.+...... .+..+++|+.|+++++. ++..
T Consensus 120 ~~L~L~~n-~l~~l~~----------------~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~ 180 (390)
T 3o6n_A 120 TVLVLERN-DLSSLPR----------------GIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNR-LTHV 180 (390)
T ss_dssp CEEECCSS-CCCCCCT----------------TTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSC-CSBC
T ss_pred CEEECCCC-ccCcCCH----------------HHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCc-CCcc
Confidence 99999887 3332211 124668899999994 445544333 45678899999999883 3332
Q ss_pred HHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHH
Q 003957 542 ALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVI 621 (784)
Q Consensus 542 ~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~ 621 (784)
. + ..+++|+.|+++.+.++.. ...++|++|++++|...... ....++|++|+++++ .+++. .
T Consensus 181 ~---~-~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n--~l~~~---~ 242 (390)
T 3o6n_A 181 D---L-SLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVVR---GPVNVELTILKLQHN--NLTDT---A 242 (390)
T ss_dssp C---G-GGCTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSS--CCCCC---G
T ss_pred c---c-ccccccceeeccccccccc------CCCCcceEEECCCCeeeecc---ccccccccEEECCCC--CCccc---H
Confidence 1 2 3478899999988887753 34568999999998321111 123479999999995 57654 2
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHH
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAA 701 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l 701 (784)
.+..+++|++|++++|.+.... .....++++|+.|++++|. ++... ..+..+++|+.|++++|.+ ..++..+
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~l~~L~~L~L~~n~l----~~~~~~~ 314 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNR-LVALN-LYGQPIPTLKVLDLSHNHL----LHVERNQ 314 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSC-CCEEE-CSSSCCTTCCEEECCSSCC----CCCGGGH
T ss_pred HHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCc-CcccC-cccCCCCCCCEEECCCCcc----eecCccc
Confidence 4567899999999999865421 1223468999999999987 55321 1224689999999999977 4555567
Q ss_pred hcCCCCceeccccccccCCCCCcccccCCCCCCEEEecCCCCcCc
Q 003957 702 SKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 702 ~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~~~~ 746 (784)
..+++|+.|++++|+.. .++ +..+++|++|++++|+....
T Consensus 315 ~~l~~L~~L~L~~N~i~----~~~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIV----TLK-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp HHHTTCSEEECCSSCCC----CCC-CCTTCCCSEEECCSSCEEHH
T ss_pred cccCcCCEEECCCCccc----eeC-chhhccCCEEEcCCCCccch
Confidence 78899999999998866 333 66778999999999985443
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=5.3e-19 Score=197.53 Aligned_cols=141 Identities=16% Similarity=0.099 Sum_probs=72.0
Q ss_pred CCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 288 PSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 288 ~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
..+++|++|++++|. +++. +.+ ..+++|++|++++|. ++..+ +..+++|+.|++++|.++.
T Consensus 39 ~~l~~L~~L~Ls~n~-l~~~--~~l-~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~---------- 99 (457)
T 3bz5_A 39 EQLATLTSLDCHNSS-ITDM--TGI-EKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTN---------- 99 (457)
T ss_dssp HHHTTCCEEECCSSC-CCCC--TTG-GGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSC----------
T ss_pred hHcCCCCEEEccCCC-cccC--hhh-cccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCce----------
Confidence 456778888888764 3322 122 346677777776653 22221 3455666666666666554
Q ss_pred CccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCC-c
Q 003957 368 PYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDT-M 446 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~-~ 446 (784)
++ +..+++|++|++++|.... ++ ...+++|+.|++++|.++...+.. .++|++|++++| .
T Consensus 100 ----------~~--~~~l~~L~~L~L~~N~l~~---l~--~~~l~~L~~L~l~~N~l~~l~l~~--l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 100 ----------LD--VTPLTKLTYLNCDTNKLTK---LD--VSQNPLLTYLNCARNTLTEIDVSH--NTQLTELDCHLNKK 160 (457)
T ss_dssp ----------CC--CTTCTTCCEEECCSSCCSC---CC--CTTCTTCCEEECTTSCCSCCCCTT--CTTCCEEECTTCSC
T ss_pred ----------ee--cCCCCcCCEEECCCCcCCe---ec--CCCCCcCCEEECCCCccceecccc--CCcCCEEECCCCCc
Confidence 11 2455666666666654321 11 245556666666665555432111 345555555555 2
Q ss_pred cchhhHHHHHhcCCCccEEeccCC
Q 003957 447 ISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 447 i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
+.... +..+++|++|+++++
T Consensus 161 ~~~~~----~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 161 ITKLD----VTPQTQLTTLDCSFN 180 (457)
T ss_dssp CCCCC----CTTCTTCCEEECCSS
T ss_pred ccccc----cccCCcCCEEECCCC
Confidence 22221 234455555555544
No 42
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=7.4e-18 Score=180.78 Aligned_cols=254 Identities=19% Similarity=0.189 Sum_probs=162.3
Q ss_pred CccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEe
Q 003957 387 NLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLN 466 (784)
Q Consensus 387 ~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~ 466 (784)
.++.++++++.. .+..+..+ ..++++.|+++++.+++.....+..++|++|++++|.+++.++...+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~-~~~~~~~~--~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNL-HPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBC-CHHHHHHH--HHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccC-CHHHHHhh--hhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 478888887654 33332221 127788888888877665544444678888888888877766666677788888888
Q ss_pred ccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHh
Q 003957 467 ARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLL 546 (784)
Q Consensus 467 L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l 546 (784)
+++|. +++ .....+
T Consensus 125 L~~~~-l~~-----------------------------------------------------------------~~~~~l 138 (336)
T 2ast_B 125 LEGLR-LSD-----------------------------------------------------------------PIVNTL 138 (336)
T ss_dssp CTTCB-CCH-----------------------------------------------------------------HHHHHH
T ss_pred CcCcc-cCH-----------------------------------------------------------------HHHHHH
Confidence 87762 222 223333
Q ss_pred hccCCCCcEEEeeee-ccChHHHHHHHhhCCCCcEEEeccc-C-ChhHHHHhhcCCC-CccEEEccCCCC-CCChHHHHH
Q 003957 547 PTTCPMLELVVLYFQ-VMSDSIIINILESLRRLQVLAICHC-L-GDLSISSFKLPLP-NLRKLKLERVTP-WMTNNDLVI 621 (784)
Q Consensus 547 ~~~~~~L~~L~L~~~-~i~~~~l~~~~~~l~~L~~L~Ls~c-~-~~~~~~~l~~~~~-~L~~L~L~~c~~-~l~~~~l~~ 621 (784)
+. +++|++|+++.+ .+++.++...+.++++|++|++++| . ++..+..+...++ +|++|++++| . .+++.++..
T Consensus 139 ~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~-~~~~~~~~l~~ 216 (336)
T 2ast_B 139 AK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY-RKNLQKSDLST 216 (336)
T ss_dssp TT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC-GGGSCHHHHHH
T ss_pred hc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC-cccCCHHHHHH
Confidence 33 555666666433 5665556666666666666666666 2 3333444444456 7777777775 3 467677777
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHH
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAA 701 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l 701 (784)
...++++|++|++++|..+++.....+ ..+++|+.|++++|..+++.++..+.++++|+.|++++| + +++.+....
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i--~~~~~~~l~ 292 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V--PDGTLQLLK 292 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S--CTTCHHHHH
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c--CHHHHHHHH
Confidence 777788888888888875554444433 457888888888887777777767778888888888888 3 544444443
Q ss_pred hcCCCCceecccccccc
Q 003957 702 SKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 702 ~~l~~L~~L~L~~c~~~ 718 (784)
..++. |++++|...
T Consensus 293 ~~l~~---L~l~~n~l~ 306 (336)
T 2ast_B 293 EALPH---LQINCSHFT 306 (336)
T ss_dssp HHSTT---SEESCCCSC
T ss_pred hhCcc---eEEecccCc
Confidence 33444 446554443
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=1.3e-19 Score=204.40 Aligned_cols=296 Identities=17% Similarity=0.119 Sum_probs=190.4
Q ss_pred ccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCc
Q 003957 412 RKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPC 490 (784)
Q Consensus 412 ~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~ 490 (784)
++++.|++++|.++......|. .++|++|+|++|.++...... +.++++|++|+++++. ++....
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~------------ 97 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNR-LKLIPL------------ 97 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSC-CCSCCT------------
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCCCc-CCccCc------------
Confidence 5778888888888776666665 578888888888776543333 3577888888887763 332211
Q ss_pred hhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHH
Q 003957 491 ADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIII 569 (784)
Q Consensus 491 ~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~ 569 (784)
..+..+++|++|+++ +.+..... ..+..+++|+.|+++++. +.......+. .+++|++|+++.+.++... .
T Consensus 98 ----~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~-~ 169 (477)
T 2id5_A 98 ----GVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDND-LVYISHRAFS-GLNSLEQLTLEKCNLTSIP-T 169 (477)
T ss_dssp ----TSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTT-CCEECTTSST-TCTTCCEEEEESCCCSSCC-H
T ss_pred ----ccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCc-cceeChhhcc-CCCCCCEEECCCCcCcccC-h
Confidence 134557788888884 34443322 345667788888888762 2221112222 3677888888877776542 3
Q ss_pred HHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHH
Q 003957 570 NILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIIS 649 (784)
Q Consensus 570 ~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~ 649 (784)
..+.++++|+.|++++|............+++|++|++++| +.+..... ... ...+|++|++++|.+.. ......
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~-~~~-~~~~L~~L~l~~n~l~~--~~~~~~ 244 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW-PYLDTMTP-NCL-YGLNLTSLSITHCNLTA--VPYLAV 244 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC-TTCCEECT-TTT-TTCCCSEEEEESSCCCS--CCHHHH
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC-ccccccCc-ccc-cCccccEEECcCCcccc--cCHHHh
Confidence 44677888888888887322222222345678888888886 33332111 111 23478888888887654 122234
Q ss_pred hcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--c
Q 003957 650 QGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--Y 727 (784)
Q Consensus 650 ~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~ 727 (784)
.++++|+.|+|++|. ++......+.++++|+.|++++|.+ . ...+..+..+++|+.|+|++|... .++. +
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~ 316 (477)
T 2id5_A 245 RHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQL--A-VVEPYAFRGLNYLRVLNVSGNQLT----TLEESVF 316 (477)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCC--S-EECTTTBTTCTTCCEEECCSSCCS----CCCGGGB
T ss_pred cCccccCeeECCCCc-CCccChhhccccccCCEEECCCCcc--c-eECHHHhcCcccCCEEECCCCcCc----eeCHhHc
Confidence 568888888888876 5554444556788888888888865 4 444556777888888888887655 3444 6
Q ss_pred cCCCCCCEEEecCCC
Q 003957 728 ADRYSLSTVKITKCK 742 (784)
Q Consensus 728 ~~~~~L~~L~is~C~ 742 (784)
..+++|++|++++|+
T Consensus 317 ~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 317 HSVGNLETLILDSNP 331 (477)
T ss_dssp SCGGGCCEEECCSSC
T ss_pred CCCcccCEEEccCCC
Confidence 778888888888876
No 44
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=8.2e-18 Score=180.41 Aligned_cols=213 Identities=16% Similarity=0.191 Sum_probs=160.5
Q ss_pred cCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc--CChhHHHHhhcCCCC
Q 003957 524 IKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC--LGDLSISSFKLPLPN 601 (784)
Q Consensus 524 l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c--~~~~~~~~l~~~~~~ 601 (784)
+++|++|++++| .+++..+......+++|++|+++.+.+++.... .+..+++|++|++++| .++..+..+...+++
T Consensus 92 ~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 92 PFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred CCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 456677777766 355554555556689999999988788877554 4567999999999998 455556666667799
Q ss_pred ccEEEccCCCCCCChHHHHHHHhcCC-CCcEEEecCCC-CCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 602 LRKLKLERVTPWMTNNDLVILTQNCS-ELVELSLVGCT-LLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 602 L~~L~L~~c~~~l~~~~l~~l~~~~~-~L~~L~Ls~c~-~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
|++|++++| ..+++.++......++ +|++|++++|. .+++........++++|+.|++++|..+++.++..+..+++
T Consensus 170 L~~L~l~~~-~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 170 LDELNLSWC-FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp CCEEECCCC-TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCEEcCCCC-CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 999999996 4788888888888899 99999999997 46655666666679999999999998788888888888999
Q ss_pred CCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEecCCCCcCc
Q 003957 680 LEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 680 L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~~~~ 746 (784)
|+.|++++|. ++.+. ....+..+++|+.|++++| ++.. .+..+. .+|+.|++++|+....
T Consensus 249 L~~L~l~~~~-~~~~~-~~~~l~~~~~L~~L~l~~~--i~~~-~~~~l~--~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 249 LQHLSLSRCY-DIIPE-TLLELGEIPTLKTLQVFGI--VPDG-TLQLLK--EALPHLQINCSHFTTI 308 (336)
T ss_dssp CCEEECTTCT-TCCGG-GGGGGGGCTTCCEEECTTS--SCTT-CHHHHH--HHSTTSEESCCCSCCT
T ss_pred CCEeeCCCCC-CCCHH-HHHHHhcCCCCCEEeccCc--cCHH-HHHHHH--hhCcceEEecccCccc
Confidence 9999999995 34523 3355778999999999998 4222 223222 3466777887765443
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=4.2e-19 Score=205.84 Aligned_cols=307 Identities=15% Similarity=0.073 Sum_probs=219.6
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCc
Q 003957 384 LASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGL 462 (784)
Q Consensus 384 ~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L 462 (784)
.+.+++.++++++..- .. ...++..+++|+.|++++|.+++.....|. .++|++|+|++|.++...... +.++++|
T Consensus 49 ~l~~l~~l~l~~~~l~-~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEES-EE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTC
T ss_pred cCCCceEEEeeCCCCC-Cc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH-HcCCCCC
Confidence 4678899999887531 11 122347789999999999988877766666 689999999999877654332 3688999
Q ss_pred cEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChH
Q 003957 463 KYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGED 541 (784)
Q Consensus 463 ~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 541 (784)
++|++++|. ++.... ..++.+++|++|+++ +.+...... .+..+++|+.|+++++ .++..
T Consensus 126 ~~L~L~~n~-l~~l~~----------------~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~ 186 (597)
T 3oja_B 126 TVLVLERND-LSSLPR----------------GIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSN-RLTHV 186 (597)
T ss_dssp CEEECCSSC-CCCCCT----------------TTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTS-CCSBC
T ss_pred CEEEeeCCC-CCCCCH----------------HHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCC-CCCCc
Confidence 999998873 332211 124678899999994 445444333 4667889999999988 33332
Q ss_pred HHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHH
Q 003957 542 ALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVI 621 (784)
Q Consensus 542 ~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~ 621 (784)
. ...+++|+.|+++.+.++.. ...++|+.|++++|...... ....++|+.|+++++ .+++. .
T Consensus 187 ~----~~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n--~l~~~---~ 248 (597)
T 3oja_B 187 D----LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVVR---GPVNVELTILKLQHN--NLTDT---A 248 (597)
T ss_dssp C----GGGCTTCSEEECCSSCCSEE------ECCTTCSEEECCSSCCCEEE---CSCCSCCCEEECCSS--CCCCC---G
T ss_pred C----hhhhhhhhhhhcccCccccc------cCCchhheeeccCCcccccc---cccCCCCCEEECCCC--CCCCC---h
Confidence 1 23478899999988877752 34568999999998321111 122368999999995 56653 3
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHH
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAA 701 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l 701 (784)
.+..+++|+.|++++|.+.... .....++++|+.|+|++|. ++.. +..+..+++|+.|+|++|.+ ..++..+
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~l-~~~~~~l~~L~~L~Ls~N~l----~~i~~~~ 320 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNR-LVAL-NLYGQPIPTLKVLDLSHNHL----LHVERNQ 320 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECTTSC-CCEE-ECSSSCCTTCCEEECCSSCC----CCCGGGH
T ss_pred hhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECCCCC-CCCC-CcccccCCCCcEEECCCCCC----CccCccc
Confidence 4567899999999999875421 1223468999999999987 5432 12224689999999999977 4566667
Q ss_pred hcCCCCceeccccccccCCCCCcccccCCCCCCEEEecCCCC
Q 003957 702 SKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKS 743 (784)
Q Consensus 702 ~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~ 743 (784)
..+++|+.|+|++|+.. .+| +..+++|+.|++++|+.
T Consensus 321 ~~l~~L~~L~L~~N~l~----~~~-~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIV----TLK-LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp HHHTTCSEEECCSSCCC----CCC-CCTTCCCSEEECCSSCE
T ss_pred ccCCCCCEEECCCCCCC----CcC-hhhcCCCCEEEeeCCCC
Confidence 88999999999998876 333 66778999999999874
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=1.1e-18 Score=191.30 Aligned_cols=289 Identities=13% Similarity=0.051 Sum_probs=215.4
Q ss_pred hCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCC
Q 003957 410 QARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSY 488 (784)
Q Consensus 410 ~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 488 (784)
.+++++.|+++++.++......|. .++|++|++++|.++...... +..+++|++|+++++. ++...
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~----------- 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNA-IRYLP----------- 109 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh-ccCCCCcCEEECCCCC-CCcCC-----------
Confidence 468999999999988776655555 689999999999887654333 3688999999998874 33321
Q ss_pred CchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH
Q 003957 489 PCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI 567 (784)
Q Consensus 489 ~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~ 567 (784)
...+..+++|++|+++ +.+...+. ..+..+++|++|+++++. +.......+. .+++|++|+++.+.+++..
T Consensus 110 -----~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 110 -----PHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNN-LERIEDDTFQ-ATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCBCCTTTTS-SCTTCCEEECCSSCCSBCC
T ss_pred -----HHHhcCCCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCc-cCccChhhcc-CCCCCCEEECCCCcCCccc
Confidence 1246678999999994 45554333 245678899999999883 3322112233 3789999999988887753
Q ss_pred HHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHH
Q 003957 568 IINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQL 646 (784)
Q Consensus 568 l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~ 646 (784)
+..+++|+.|++++|. .. + ...++|++|+++++ .++.... ...++|+.|++++|.....
T Consensus 182 ----~~~l~~L~~L~l~~n~l~~-----~-~~~~~L~~L~l~~n--~l~~~~~----~~~~~L~~L~l~~n~l~~~---- 241 (390)
T 3o6n_A 182 ----LSLIPSLFHANVSYNLLST-----L-AIPIAVEELDASHN--SINVVRG----PVNVELTILKLQHNNLTDT---- 241 (390)
T ss_dssp ----GGGCTTCSEEECCSSCCSE-----E-ECCSSCSEEECCSS--CCCEEEC----CCCSSCCEEECCSSCCCCC----
T ss_pred ----cccccccceeecccccccc-----c-CCCCcceEEECCCC--eeeeccc----cccccccEEECCCCCCccc----
Confidence 4668899999999983 21 1 23368999999995 5654321 2357999999999987763
Q ss_pred HHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc
Q 003957 647 IISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD 726 (784)
Q Consensus 647 ~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~ 726 (784)
.....+++|+.|++++|. ++...+..+.++++|+.|++++|.+ ..++..+..+++|+.|++++|... .+|.
T Consensus 242 ~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~l~~L~~L~L~~n~l~----~~~~ 312 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSHNHLL----HVER 312 (390)
T ss_dssp GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCC----CEEECSSSCCTTCCEEECCSSCCC----CCGG
T ss_pred HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcC----cccCcccCCCCCCCEEECCCCcce----ecCc
Confidence 133568999999999987 7666566778899999999999976 444445567899999999999766 4566
Q ss_pred -ccCCCCCCEEEecCCCCcCccc
Q 003957 727 -YADRYSLSTVKITKCKSKNRNL 748 (784)
Q Consensus 727 -~~~~~~L~~L~is~C~~~~~~~ 748 (784)
+..+++|++|++++|+.....+
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~~~~ 335 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVTLKL 335 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCCCCC
T ss_pred cccccCcCCEEECCCCccceeCc
Confidence 7888999999999998755544
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=7.4e-19 Score=196.16 Aligned_cols=321 Identities=15% Similarity=0.026 Sum_probs=142.8
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCcc
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYC 370 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~ 370 (784)
++|++|++++|.. +. ++ ...++|++|++++|.. +..+ ...++|++|++++|.++.
T Consensus 91 ~~L~~L~l~~n~l-~~--lp---~~~~~L~~L~l~~n~l-~~l~-----~~~~~L~~L~L~~n~l~~------------- 145 (454)
T 1jl5_A 91 PHLESLVASCNSL-TE--LP---ELPQSLKSLLVDNNNL-KALS-----DLPPLLEYLGVSNNQLEK------------- 145 (454)
T ss_dssp TTCSEEECCSSCC-SS--CC---CCCTTCCEEECCSSCC-SCCC-----SCCTTCCEEECCSSCCSS-------------
T ss_pred CCCCEEEccCCcC-Cc--cc---cccCCCcEEECCCCcc-Cccc-----CCCCCCCEEECcCCCCCC-------------
Confidence 4666666666532 21 11 1235666666666422 2110 011466666666665554
Q ss_pred CcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccch
Q 003957 371 NSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISG 449 (784)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~ 449 (784)
+|. +..+++|++|++++|.... ++ ...++|+.|++++|.++... .+. .++|++|++++|.++.
T Consensus 146 -------lp~-~~~l~~L~~L~l~~N~l~~---lp---~~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 146 -------LPE-LQNSSFLKIIDVDNNSLKK---LP---DLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp -------CCC-CTTCTTCCEEECCSSCCSC---CC---CCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS
T ss_pred -------Ccc-cCCCCCCCEEECCCCcCcc---cC---CCcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc
Confidence 232 3556666666666664321 11 12346666666666655422 233 4666666666665543
Q ss_pred hhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCccc
Q 003957 450 AALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLH 528 (784)
Q Consensus 450 ~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~ 528 (784)
.. ...++|++|++++|. ++... .++.+++|++|+++ +.+...+ ...++|+
T Consensus 210 l~-----~~~~~L~~L~l~~n~-l~~lp------------------~~~~l~~L~~L~l~~N~l~~l~-----~~~~~L~ 260 (454)
T 1jl5_A 210 LP-----DLPLSLESIVAGNNI-LEELP------------------ELQNLPFLTTIYADNNLLKTLP-----DLPPSLE 260 (454)
T ss_dssp CC-----CCCTTCCEEECCSSC-CSSCC------------------CCTTCTTCCEEECCSSCCSSCC-----SCCTTCC
T ss_pred CC-----CCcCcccEEECcCCc-CCccc------------------ccCCCCCCCEEECCCCcCCccc-----ccccccC
Confidence 11 122466666666652 22110 23455666666663 3333211 1235677
Q ss_pred EEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEc
Q 003957 529 SITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKL 607 (784)
Q Consensus 529 ~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L 607 (784)
.|+++++. +.. ++..+++|+.|+++.|.+++.. ...++|+.|++++|. .. +....++|++|++
T Consensus 261 ~L~l~~N~-l~~-----l~~~~~~L~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~L 324 (454)
T 1jl5_A 261 ALNVRDNY-LTD-----LPELPQSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNEIRS-----LCDLPPSLEELNV 324 (454)
T ss_dssp EEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSEES-----CCCTTCCEEECCSSCCSE-----ECCCCTTCCEEEC
T ss_pred EEECCCCc-ccc-----cCcccCcCCEEECcCCccCccc-----CcCCcCCEEECcCCcCCc-----ccCCcCcCCEEEC
Confidence 77777662 221 2333466777777666655410 112467777777762 21 1112246777777
Q ss_pred cCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCH--HHHHHhhC---------
Q 003957 608 ERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITA--YGVTSLFN--------- 676 (784)
Q Consensus 608 ~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~--~~~~~l~~--------- 676 (784)
+++ .++. + ...+++|+.|++++|....- . ..+++|+.|++++|. ++. ..+..+..
T Consensus 325 s~N--~l~~--l---p~~~~~L~~L~L~~N~l~~l---p---~~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~ 390 (454)
T 1jl5_A 325 SNN--KLIE--L---PALPPRLERLIASFNHLAEV---P---ELPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAE 390 (454)
T ss_dssp CSS--CCSC--C---CCCCTTCCEEECCSSCCSCC---C---CCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC----
T ss_pred CCC--cccc--c---cccCCcCCEEECCCCccccc---c---chhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccc
Confidence 773 4542 1 12246777777777765431 1 135677777777765 332 11122222
Q ss_pred ----CCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 677 ----CIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 677 ----~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+++|+.|++++|.+ ..++.. -++|+.|.+.+|...
T Consensus 391 i~~~~~~L~~L~ls~N~l----~~~~~i---P~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 391 VPELPQNLKQLHVETNPL----REFPDI---PESVEDLRMNSERVV 429 (454)
T ss_dssp ----------------------------------------------
T ss_pred cccccCcCCEEECCCCcC----Cccccc---hhhHhheeCcCcccC
Confidence 37899999999976 322111 135777788877654
No 48
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=7.9e-17 Score=176.35 Aligned_cols=159 Identities=18% Similarity=0.097 Sum_probs=81.5
Q ss_pred CCCcEEEeeeeccChHHHH---HHHhhCCCCcEEEeccc-CChhHHHH----hhcCCCCccEEEccCCCCCCChHHHH--
Q 003957 551 PMLELVVLYFQVMSDSIII---NILESLRRLQVLAICHC-LGDLSISS----FKLPLPNLRKLKLERVTPWMTNNDLV-- 620 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~---~~~~~l~~L~~L~Ls~c-~~~~~~~~----l~~~~~~L~~L~L~~c~~~l~~~~l~-- 620 (784)
++|++|+++.|.+++.++. ..+..+++|++|++++| +.+..... ....+++|++|++++| .+++.+..
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHH
Confidence 3444444444444433333 23334555555555555 23222111 2234466666666663 45543332
Q ss_pred -HHHhcCCCCcEEEecCCCCCChHHHH--HHH--hcCCCCcEEeecCCCCCCHHHHH----Hh-hCCCCCCEEEcccCCC
Q 003957 621 -ILTQNCSELVELSLVGCTLLSSDSQL--IIS--QGWPGLISLHLEECGDITAYGVT----SL-FNCIALEDLLLRHNGP 690 (784)
Q Consensus 621 -~l~~~~~~L~~L~Ls~c~~~~~~~~~--~~~--~~~~~L~~L~L~~c~~i~~~~~~----~l-~~~~~L~~L~L~~n~~ 690 (784)
..+..+++|++|++++|.+....... ... ..+++|+.|+|++|. ++..++. .+ .++++|+.|++++|.+
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 33455677777777777654332221 111 126778888887776 6664322 23 3578888888888865
Q ss_pred CCChhH--HHHHHhcCCCCceecccc
Q 003957 691 GIPRDF--ILDAASKMPMLRLVSLDL 714 (784)
Q Consensus 691 gl~~~~--~~~~l~~l~~L~~L~L~~ 714 (784)
+... +......+++++.+.+..
T Consensus 316 --~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 316 --SEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp --CTTSHHHHHHHHHHHHHTCCEECC
T ss_pred --CcchhHHHHHHHHhhhcCcchhhh
Confidence 3222 233344455566555544
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=7.1e-18 Score=195.49 Aligned_cols=289 Identities=13% Similarity=0.056 Sum_probs=216.4
Q ss_pred hCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCC
Q 003957 410 QARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSY 488 (784)
Q Consensus 410 ~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 488 (784)
.+++++.++++++.++......|. .++|++|++++|.++...... +..+++|++|++++|. ++....
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~---------- 116 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNA-IRYLPP---------- 116 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSC-CCCCCT----------
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH-hcCCCCCCEEECCCCc-CCCCCH----------
Confidence 467899999999988776655555 689999999999887654333 3688999999998874 433221
Q ss_pred CchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH
Q 003957 489 PCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI 567 (784)
Q Consensus 489 ~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~ 567 (784)
..++.+++|++|+++ +.+...+. ..+..+++|++|++++| .+.......+. .+++|+.|+++.|.++...
T Consensus 117 ------~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 117 ------HVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNN-NLERIEDDTFQ-ATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCBCCTTTTT-TCTTCCEEECTTSCCSBCC
T ss_pred ------HHHcCCCCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCC-cCCCCChhhhh-cCCcCcEEECcCCCCCCcC
Confidence 145778999999994 55554433 34577899999999998 33322222233 3789999999888887643
Q ss_pred HHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHH
Q 003957 568 IINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQL 646 (784)
Q Consensus 568 l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~ 646 (784)
+..+++|+.|++++|. .. + ...++|+.|+++++ .++.... ...++|+.|++++|.....
T Consensus 188 ----~~~l~~L~~L~l~~n~l~~-----l-~~~~~L~~L~ls~n--~l~~~~~----~~~~~L~~L~L~~n~l~~~---- 247 (597)
T 3oja_B 188 ----LSLIPSLFHANVSYNLLST-----L-AIPIAVEELDASHN--SINVVRG----PVNVELTILKLQHNNLTDT---- 247 (597)
T ss_dssp ----GGGCTTCSEEECCSSCCSE-----E-ECCTTCSEEECCSS--CCCEEEC----SCCSCCCEEECCSSCCCCC----
T ss_pred ----hhhhhhhhhhhcccCcccc-----c-cCCchhheeeccCC--ccccccc----ccCCCCCEEECCCCCCCCC----
Confidence 4668899999999983 22 1 23478999999995 5653221 1236899999999987763
Q ss_pred HHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc
Q 003957 647 IISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD 726 (784)
Q Consensus 647 ~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~ 726 (784)
.....+++|+.|+|++|. ++...+..+.++++|+.|+|++|.+ ..++..+..+++|+.|+|++|... .+|.
T Consensus 248 ~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l----~~l~~~~~~l~~L~~L~Ls~N~l~----~i~~ 318 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSHNHLL----HVER 318 (597)
T ss_dssp GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCC----CEEECSSSCCTTCCEEECCSSCCC----CCGG
T ss_pred hhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCC----CCCCcccccCCCCcEEECCCCCCC----ccCc
Confidence 223568999999999987 7666666778999999999999976 444555677999999999999877 5677
Q ss_pred -ccCCCCCCEEEecCCCCcCccc
Q 003957 727 -YADRYSLSTVKITKCKSKNRNL 748 (784)
Q Consensus 727 -~~~~~~L~~L~is~C~~~~~~~ 748 (784)
+..+++|+.|++++|......+
T Consensus 319 ~~~~l~~L~~L~L~~N~l~~~~~ 341 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNSIVTLKL 341 (597)
T ss_dssp GHHHHTTCSEEECCSSCCCCCCC
T ss_pred ccccCCCCCEEECCCCCCCCcCh
Confidence 8889999999999998755444
No 50
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=3.2e-16 Score=171.44 Aligned_cols=165 Identities=23% Similarity=0.237 Sum_probs=121.4
Q ss_pred cCCCCcEEEeeeeccChHHHHH---HHhhC---------CCCcEEEeccc-CChhHHHH---hhcCCCCccEEEccCCCC
Q 003957 549 TCPMLELVVLYFQVMSDSIIIN---ILESL---------RRLQVLAICHC-LGDLSISS---FKLPLPNLRKLKLERVTP 612 (784)
Q Consensus 549 ~~~~L~~L~L~~~~i~~~~l~~---~~~~l---------~~L~~L~Ls~c-~~~~~~~~---l~~~~~~L~~L~L~~c~~ 612 (784)
.+++|++|+++.|.+++.+... .+..+ ++|++|++++| +++..+.. ....+++|++|++++|
T Consensus 120 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-- 197 (386)
T 2ca6_A 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-- 197 (386)
T ss_dssp HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS--
T ss_pred hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC--
Confidence 3677888888777776554433 33344 89999999999 45444443 3345689999999995
Q ss_pred CCChHHHHHH----HhcCCCCcEEEecCCCCCChH--HHHHHHhcCCCCcEEeecCCCCCCHHHHHHh----h--CCCCC
Q 003957 613 WMTNNDLVIL----TQNCSELVELSLVGCTLLSSD--SQLIISQGWPGLISLHLEECGDITAYGVTSL----F--NCIAL 680 (784)
Q Consensus 613 ~l~~~~l~~l----~~~~~~L~~L~Ls~c~~~~~~--~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l----~--~~~~L 680 (784)
.+++.++..+ +..+++|+.|++++|.+...+ ........+++|+.|+|++|. ++..+...+ . .+++|
T Consensus 198 ~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L 276 (386)
T 2ca6_A 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGL 276 (386)
T ss_dssp CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCC
T ss_pred CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCe
Confidence 7888775544 347899999999999864322 122334578999999999987 887755443 2 38999
Q ss_pred CEEEcccCCCCCChh---HHHHHH-hcCCCCceecccccccc
Q 003957 681 EDLLLRHNGPGIPRD---FILDAA-SKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 681 ~~L~L~~n~~gl~~~---~~~~~l-~~l~~L~~L~L~~c~~~ 718 (784)
+.|+|++|.+ ++. .++..+ .++++|+.|++++|+..
T Consensus 277 ~~L~L~~n~i--~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 277 QTLRLQYNEI--ELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CEEECCSSCC--BHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred EEEECcCCcC--CHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 9999999976 522 366666 67899999999999877
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.66 E-value=4.1e-17 Score=174.59 Aligned_cols=201 Identities=16% Similarity=0.084 Sum_probs=95.1
Q ss_pred CcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH-HHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCcc
Q 003957 525 KLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI-IINILESLRRLQVLAICHCLGDLSISSFKLPLPNLR 603 (784)
Q Consensus 525 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~ 603 (784)
++|++|+++++ .+.......+. .+++|+.|+++.+.++..+ ....+.++++|++|++++|....... ...++|+
T Consensus 121 ~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~~~~L~ 195 (330)
T 1xku_A 121 KTLQELRVHEN-EITKVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLT 195 (330)
T ss_dssp TTCCEEECCSS-CCCBBCHHHHT-TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCS
T ss_pred ccccEEECCCC-cccccCHhHhc-CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc---cccccCC
Confidence 35555555554 22211111222 2556666666655554321 12234556677777776662111110 1125666
Q ss_pred EEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEE
Q 003957 604 KLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDL 683 (784)
Q Consensus 604 ~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L 683 (784)
+|+++++ .++.... ..+..+++|++|++++|.+.... .....++++|+.|++++|. ++. .+..+..+++|++|
T Consensus 196 ~L~l~~n--~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~-lp~~l~~l~~L~~L 268 (330)
T 1xku_A 196 ELHLDGN--KITKVDA-ASLKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNNK-LVK-VPGGLADHKYIQVV 268 (330)
T ss_dssp EEECTTS--CCCEECT-GGGTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSSC-CSS-CCTTTTTCSSCCEE
T ss_pred EEECCCC--cCCccCH-HHhcCCCCCCEEECCCCcCceeC--hhhccCCCCCCEEECCCCc-Ccc-CChhhccCCCcCEE
Confidence 6776663 4443221 12335566677777666544311 1112346666666666665 331 11234456666777
Q ss_pred EcccCCCCCChhHHHHHHh------cCCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCC
Q 003957 684 LLRHNGPGIPRDFILDAAS------KMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKC 741 (784)
Q Consensus 684 ~L~~n~~gl~~~~~~~~l~------~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C 741 (784)
++++|.+ + ......+. ..+.|+.|++.+|+..... ..|. +..+++|+.+++++|
T Consensus 269 ~l~~N~i--~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~-i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 269 YLHNNNI--S-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE-IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSCC--C-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG-SCGGGGTTCCCGGGEEC---
T ss_pred ECCCCcC--C-ccChhhcCCcccccccccccceEeecCcccccc-cCccccccccceeEEEeccc
Confidence 7766654 2 11111221 1355666666666654211 1122 666666666666665
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=4.9e-17 Score=174.10 Aligned_cols=178 Identities=15% Similarity=0.029 Sum_probs=89.7
Q ss_pred CCCCcEEEeeeeccChHHH-HHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSII-INILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l-~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+++|+.|+++.+.+++.+. ...+..+ +|+.|++++|.-..... ...++|++|+++++ .++..... .+..+++
T Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n--~i~~~~~~-~l~~l~~ 218 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK---DLPETLNELHLDHN--KIQAIELE-DLLRYSK 218 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS---SSCSSCSCCBCCSS--CCCCCCTT-SSTTCTT
T ss_pred CccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc---cccCCCCEEECCCC--cCCccCHH-HhcCCCC
Confidence 5556666665555543211 1122233 66666666662111111 11256777777763 44432211 2234667
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhc-----
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASK----- 703 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~----- 703 (784)
|+.|++++|.+.... .....++++|+.|++++|. ++. .+..+..+++|+.|++++|.+ + ......+..
T Consensus 219 L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~-lp~~l~~l~~L~~L~l~~N~l--~-~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIE--NGSLSFLPTLRELHLDNNK-LSR-VPAGLPDLKLLQVVYLHTNNI--T-KVGVNDFCPVGFGV 291 (332)
T ss_dssp CSCCBCCSSCCCCCC--TTGGGGCTTCCEEECCSSC-CCB-CCTTGGGCTTCCEEECCSSCC--C-BCCTTSSSCSSCCS
T ss_pred CCEEECCCCcCCcCC--hhHhhCCCCCCEEECCCCc-Cee-cChhhhcCccCCEEECCCCCC--C-ccChhHcccccccc
Confidence 777777776654411 1112356777777777765 442 122345677777777777754 3 222222222
Q ss_pred -CCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCC
Q 003957 704 -MPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCK 742 (784)
Q Consensus 704 -l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~ 742 (784)
.++|+.|++++|+..... ..|. +..+++|+.+++++|+
T Consensus 292 ~~~~l~~L~l~~N~~~~~~-~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWE-VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGG-SCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccc-cCcccccccchhhhhhccccc
Confidence 356777777777654211 1233 6777777777777764
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=5.7e-17 Score=172.33 Aligned_cols=290 Identities=16% Similarity=0.081 Sum_probs=174.2
Q ss_pred ccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEe
Q 003957 388 LQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLN 466 (784)
Q Consensus 388 L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~ 466 (784)
++..+++.+.. ...+..+...+++|+.|++++|.+++.....|. .++|++|++++|.++.... +..+++|++|+
T Consensus 12 l~i~~ls~~~l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~ 86 (317)
T 3o53_A 12 YKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLD 86 (317)
T ss_dssp EEEESCCTTTH--HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEE
T ss_pred eeEeeccccch--hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEE
Confidence 34444444332 223334445666777777777777666555554 4677777777776654321 45667777777
Q ss_pred ccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHh
Q 003957 467 ARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLL 546 (784)
Q Consensus 467 L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l 546 (784)
+++|. ++. +...+ +|+.|+++++ .++.. .
T Consensus 87 Ls~n~-l~~---------------------l~~~~------------------------~L~~L~l~~n-~l~~~----~ 115 (317)
T 3o53_A 87 LNNNY-VQE---------------------LLVGP------------------------SIETLHAANN-NISRV----S 115 (317)
T ss_dssp CCSSE-EEE---------------------EEECT------------------------TCCEEECCSS-CCSEE----E
T ss_pred CcCCc-ccc---------------------ccCCC------------------------CcCEEECCCC-ccCCc----C
Confidence 76652 221 11123 4444444444 11111 0
Q ss_pred hccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhc
Q 003957 547 PTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQN 625 (784)
Q Consensus 547 ~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~ 625 (784)
...+++|++|+++.|.++... ...+..+++|++|++++| +.......+...+++|++|+++++ .++... . ...
T Consensus 116 ~~~~~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~--~-~~~ 189 (317)
T 3o53_A 116 CSRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN--FIYDVK--G-QVV 189 (317)
T ss_dssp ECCCSSCEEEECCSSCCCSGG-GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS--CCCEEE--C-CCC
T ss_pred ccccCCCCEEECCCCCCCCcc-chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC--cCcccc--c-ccc
Confidence 122556777777766666531 223456778888888887 344444445445688888888884 565431 1 113
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 626 CSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 626 ~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
+++|++|++++|.+..-. .. ...+++|+.|++++|. ++.. +..+..+++|+.|++++|.+ ....++..+..++
T Consensus 190 l~~L~~L~Ls~N~l~~l~--~~-~~~l~~L~~L~L~~N~-l~~l-~~~~~~l~~L~~L~l~~N~~--~~~~~~~~~~~~~ 262 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMG--PE-FQSAAGVTWISLRNNK-LVLI-EKALRFSQNLEHFDLRGNGF--HCGTLRDFFSKNQ 262 (317)
T ss_dssp CTTCCEEECCSSCCCEEC--GG-GGGGTTCSEEECTTSC-CCEE-CTTCCCCTTCCEEECTTCCC--BHHHHHHHHHTCH
T ss_pred cccCCEEECCCCcCCcch--hh-hcccCcccEEECcCCc-ccch-hhHhhcCCCCCEEEccCCCc--cCcCHHHHHhccc
Confidence 778999999998775421 11 3468899999999986 5532 23456789999999999976 4357788899999
Q ss_pred CCceeccccccccCCCCCcccccCCCCCCEEEecCCCCcCccc
Q 003957 706 MLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKNRNL 748 (784)
Q Consensus 706 ~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~~~~~~ 748 (784)
+|+.|++.+++..++. .|.......+....-..|......|
T Consensus 263 ~L~~l~l~~~~~l~~~--~~~~~~~~~~~~~~~~cc~~l~~~~ 303 (317)
T 3o53_A 263 RVQTVAKQTVKKLTGQ--NEEECTVPTLGHYGAYCCEDLPAPF 303 (317)
T ss_dssp HHHHHHHHHHHHHHSS--SSCCCSSTTCEEETTEEEBCCTTTH
T ss_pred cceEEECCCchhccCC--chhccCCCceecccceeeccCChhH
Confidence 9999999988877543 1222222233333334466655555
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=9.2e-16 Score=165.67 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=79.4
Q ss_pred CCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHH---HHHhh
Q 003957 599 LPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYG---VTSLF 675 (784)
Q Consensus 599 ~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~---~~~l~ 675 (784)
+++|++|+++++ .++.... ..+..+++|++|++++|.... ........+++|+.|++++|. ++... +....
T Consensus 173 l~~L~~L~l~~n--~l~~~~~-~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~ 246 (353)
T 2z80_A 173 LTFLEELEIDAS--DLQSYEP-KSLKSIQNVSHLILHMKQHIL--LLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGE 246 (353)
T ss_dssp CCEEEEEEEEET--TCCEECT-TTTTTCSEEEEEEEECSCSTT--HHHHHHHHTTTEEEEEEESCB-CTTCCCC------
T ss_pred CCCCCEEECCCC--CcCccCH-HHHhccccCCeecCCCCcccc--chhhhhhhcccccEEECCCCc-ccccccccccccc
Confidence 355555555552 3332211 122345666677776666533 222233346667777777665 33221 11223
Q ss_pred CCCCCCEEEcccCCCCCChh---HHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcCc
Q 003957 676 NCIALEDLLLRHNGPGIPRD---FILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 676 ~~~~L~~L~L~~n~~gl~~~---~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~~ 746 (784)
..+.++.++++++.+ ++. .+++.+..+++|+.|++++|... .+|. +..+++|++|++++|+....
T Consensus 247 ~~~~l~~l~L~~~~l--~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~----~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 247 TNSLIKKFTFRNVKI--TDESLFQVMKLLNQISGLLELEFSRNQLK----SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCCCEEEEESCBC--CHHHHHHHHHHHHTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccchhhccccccccc--cCcchhhhHHHHhcccCCCEEECCCCCCC----ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 466778888887754 432 34556788888888888888665 4566 57888899999998875544
No 55
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=1.9e-14 Score=155.84 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=45.7
Q ss_pred EEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhh----hhcc-cC-CcCEEEecCCccchhhHHHHH---hcC-C
Q 003957 391 LHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKAL----YNFS-GS-SLEMLDVSDTMISGAALAYMV---HGN-S 460 (784)
Q Consensus 391 L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~----~~l~-~~-~L~~L~Ls~~~i~~~~l~~~~---~~l-~ 460 (784)
++++++.. + ..++.+....++|+.|++++|.+++.+. ..+. .+ +|++|+|++|.+++.+...+. ... +
T Consensus 3 ~~ls~n~~-~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPG-S-NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTT-C-CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccc-h-HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 34555433 2 2334444555568888888877776665 3333 34 677777777776655443332 222 6
Q ss_pred CccEEeccCCC
Q 003957 461 GLKYLNARGCK 471 (784)
Q Consensus 461 ~L~~L~L~~c~ 471 (784)
+|++|++++|.
T Consensus 81 ~L~~L~Ls~n~ 91 (362)
T 3goz_A 81 NVTSLNLSGNF 91 (362)
T ss_dssp TCCEEECCSSC
T ss_pred CccEEECcCCc
Confidence 77777777663
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=164.73 Aligned_cols=83 Identities=22% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCcc
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLK 463 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~ 463 (784)
.++|++|+++++.. +..... .+..+++|+.|++++|.+++.....|. .++|++|++++|.++...... +.++++|+
T Consensus 51 ~~~L~~L~l~~n~i-~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~ 127 (353)
T 2z80_A 51 TEAVKSLDLSNNRI-TYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW-FKPLSSLT 127 (353)
T ss_dssp CTTCCEEECTTSCC-CEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH-HTTCTTCS
T ss_pred cccCcEEECCCCcC-cccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH-hCCCccCC
Confidence 46899999998764 221111 136789999999999988876666665 588999999998877644433 36788899
Q ss_pred EEeccCC
Q 003957 464 YLNARGC 470 (784)
Q Consensus 464 ~L~L~~c 470 (784)
+|+++++
T Consensus 128 ~L~L~~n 134 (353)
T 2z80_A 128 FLNLLGN 134 (353)
T ss_dssp EEECTTC
T ss_pred EEECCCC
Confidence 9998776
No 57
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=2.8e-14 Score=154.56 Aligned_cols=146 Identities=12% Similarity=0.122 Sum_probs=71.9
Q ss_pred HHHHHHcCCCCCeEecCCCCccCHHH---HHHHHHhCC-CCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhc
Q 003957 309 LEFISKYCVSLGYINIKGCVSVTDVC---ISNLIRRCV-KLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTL 384 (784)
Q Consensus 309 l~~l~~~~~~L~~L~L~~c~~l~~~~---l~~l~~~~~-~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 384 (784)
++.+....++|++|++++|. +++.+ +...+.+++ +|++|++++|.++..+...++.. +..
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~---------------l~~ 77 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI---------------LAA 77 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH---------------HHT
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH---------------Hhc
Confidence 33444445557777777754 33322 223444555 67777777776665444433211 122
Q ss_pred -CCCccEEEecCCCCC--CHHHHHHHHHhC-ccccEEEecCCcCchhhhhhcc------cCCcCEEEecCCccchhhHHH
Q 003957 385 -ASNLQMLHMACCNGV--DGMYLLELMCQA-RKLKSLCLSGTQLADKALYNFS------GSSLEMLDVSDTMISGAALAY 454 (784)
Q Consensus 385 -l~~L~~L~L~~c~~l--~~~~l~~l~~~~-~~L~~L~Ls~~~l~~~~~~~l~------~~~L~~L~Ls~~~i~~~~l~~ 454 (784)
.++|++|+|++|..- ....+......+ ++|+.|++++|.+++.+...+. .++|++|++++|.+++.+...
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 256666666666531 112222222333 5666666666665555443332 135566666655555433222
Q ss_pred H---HhcCC-CccEEeccCC
Q 003957 455 M---VHGNS-GLKYLNARGC 470 (784)
Q Consensus 455 ~---~~~l~-~L~~L~L~~c 470 (784)
+ +...+ +|++|++++|
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHhcCCccccEeeecCC
Confidence 2 22333 5555555544
No 58
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=1.2e-15 Score=163.16 Aligned_cols=270 Identities=14% Similarity=0.058 Sum_probs=155.4
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
++++.|++++|.++.. .+..+..+++|++|++++|.... .. +..+..+++|+.|++++|
T Consensus 52 ~~l~~L~L~~n~i~~~-------------------~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-------------------KDGDFKNLKNLHTLILINNKISK-IS-PGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TTCCEEECCSSCCCCB-------------------CTTTTTTCTTCCEEECCSSCCCC-BC-TTTTTTCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCEe-------------------ChhhhccCCCCCEEECCCCcCCe-eC-HHHhcCCCCCCEEECCCC
Confidence 5788888888877651 11234778999999999886421 11 112367899999999999
Q ss_pred cCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCC
Q 003957 423 QLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRK 502 (784)
Q Consensus 423 ~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 502 (784)
.++...... .++|++|++++|.++...... +.++++|++|+++++. +...+.. ...+..+++
T Consensus 111 ~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~--------------~~~~~~l~~ 172 (330)
T 1xku_A 111 QLKELPEKM--PKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNP-LKSSGIE--------------NGAFQGMKK 172 (330)
T ss_dssp CCSBCCSSC--CTTCCEEECCSSCCCBBCHHH-HTTCTTCCEEECCSSC-CCGGGBC--------------TTGGGGCTT
T ss_pred cCCccChhh--cccccEEECCCCcccccCHhH-hcCCccccEEECCCCc-CCccCcC--------------hhhccCCCC
Confidence 877543222 378999999999887655443 3688999999998763 2221111 123445556
Q ss_pred ccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEE
Q 003957 503 LEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVL 581 (784)
Q Consensus 503 L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L 581 (784)
|++|+++ +.+..++.. ..++|++|+++.+.+++.. ...+.++++|++|
T Consensus 173 L~~L~l~~n~l~~l~~~------------------------------~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 221 (330)
T 1xku_A 173 LSYIRIADTNITTIPQG------------------------------LPPSLTELHLDGNKITKVD-AASLKGLNNLAKL 221 (330)
T ss_dssp CCEEECCSSCCCSCCSS------------------------------CCTTCSEEECTTSCCCEEC-TGGGTTCTTCCEE
T ss_pred cCEEECCCCccccCCcc------------------------------ccccCCEEECCCCcCCccC-HHHhcCCCCCCEE
Confidence 6666663 222221111 1245555555554444421 1234556666666
Q ss_pred Eeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHH----HHhcCCCCc
Q 003957 582 AICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLI----ISQGWPGLI 656 (784)
Q Consensus 582 ~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~----~~~~~~~L~ 656 (784)
++++| +.+.....+ ..+++|++|+++++ .++. +...+..+++|++|++++|.+..-..... .....+.|+
T Consensus 222 ~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N--~l~~--lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~ 296 (330)
T 1xku_A 222 GLSFNSISAVDNGSL-ANTPHLRELHLNNN--KLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296 (330)
T ss_dssp ECCSSCCCEECTTTG-GGSTTCCEEECCSS--CCSS--CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred ECCCCcCceeChhhc-cCCCCCCEEECCCC--cCcc--CChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence 66666 222221122 23467777777773 4442 22223456778888888776554111000 001246788
Q ss_pred EEeecCCCCCCH--HHHHHhhCCCCCCEEEcccC
Q 003957 657 SLHLEECGDITA--YGVTSLFNCIALEDLLLRHN 688 (784)
Q Consensus 657 ~L~L~~c~~i~~--~~~~~l~~~~~L~~L~L~~n 688 (784)
.|++.+|+ +.. ..+..+..+++++.+++++|
T Consensus 297 ~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 297 GVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 88888877 332 22345567888999999887
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=5.8e-15 Score=169.94 Aligned_cols=257 Identities=19% Similarity=0.071 Sum_probs=149.2
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
.+++.|+++++.++. +|..+ .++|+.|++++|..- .++ ..+++|+.|++++|
T Consensus 40 ~~l~~L~ls~n~L~~--------------------lp~~l--~~~L~~L~L~~N~l~---~lp---~~l~~L~~L~Ls~N 91 (622)
T 3g06_A 40 NGNAVLNVGESGLTT--------------------LPDCL--PAHITTLVIPDNNLT---SLP---ALPPELRTLEVSGN 91 (622)
T ss_dssp HCCCEEECCSSCCSC--------------------CCSCC--CTTCSEEEECSCCCS---CCC---CCCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCc--------------------cChhh--CCCCcEEEecCCCCC---CCC---CcCCCCCEEEcCCC
Confidence 468888888887764 33322 278899999888642 121 15678888888888
Q ss_pred cCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCC
Q 003957 423 QLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRK 502 (784)
Q Consensus 423 ~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 502 (784)
.++.... ..++|++|++++|.++.... .+++|++|+++++. ++...
T Consensus 92 ~l~~lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~-l~~lp------------------------- 137 (622)
T 3g06_A 92 QLTSLPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQ-LTSLP------------------------- 137 (622)
T ss_dssp CCSCCCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSC-CSCCC-------------------------
T ss_pred cCCcCCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCC-CCcCC-------------------------
Confidence 7664332 34678888888776654221 45677777776652 22110
Q ss_pred ccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEE
Q 003957 503 LEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLA 582 (784)
Q Consensus 503 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~ 582 (784)
..+++|++|++++| .++ .++..+++|+.|+++.|.++... ..+++|+.|+
T Consensus 138 -------------------~~l~~L~~L~Ls~N-~l~-----~l~~~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~ 187 (622)
T 3g06_A 138 -------------------VLPPGLQELSVSDN-QLA-----SLPALPSELCKLWAYNNQLTSLP-----MLPSGLQELS 187 (622)
T ss_dssp -------------------CCCTTCCEEECCSS-CCS-----CCCCCCTTCCEEECCSSCCSCCC-----CCCTTCCEEE
T ss_pred -------------------CCCCCCCEEECcCC-cCC-----CcCCccCCCCEEECCCCCCCCCc-----ccCCCCcEEE
Confidence 11245666666665 222 12234566777777766666521 4456777777
Q ss_pred ecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeec
Q 003957 583 ICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLE 661 (784)
Q Consensus 583 Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~ 661 (784)
+++|. .. +....++|+.|.++++ .++... ..+++|+.|++++|.+.. +...+++|+.|+|+
T Consensus 188 Ls~N~l~~-----l~~~~~~L~~L~L~~N--~l~~l~-----~~~~~L~~L~Ls~N~L~~------lp~~l~~L~~L~Ls 249 (622)
T 3g06_A 188 VSDNQLAS-----LPTLPSELYKLWAYNN--RLTSLP-----ALPSGLKELIVSGNRLTS------LPVLPSELKELMVS 249 (622)
T ss_dssp CCSSCCSC-----CCCCCTTCCEEECCSS--CCSSCC-----CCCTTCCEEECCSSCCSC------CCCCCTTCCEEECC
T ss_pred CCCCCCCC-----CCCccchhhEEECcCC--cccccC-----CCCCCCCEEEccCCccCc------CCCCCCcCcEEECC
Confidence 77772 21 1123367777777773 444211 234567777777765543 11345666777776
Q ss_pred CCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 662 ECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 662 ~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+|. ++... . .+++|+.|++++|.+ ..++..+..+++|+.|+|++|+..
T Consensus 250 ~N~-L~~lp--~--~~~~L~~L~Ls~N~L----~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 250 GNR-LTSLP--M--LPSGLLSLSVYRNQL----TRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp SSC-CSCCC--C--CCTTCCEEECCSSCC----CSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCC-CCcCC--c--ccccCcEEeCCCCCC----CcCCHHHhhccccCEEEecCCCCC
Confidence 664 33211 1 456666666666655 344455666666666666666554
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.55 E-value=1.9e-16 Score=169.56 Aligned_cols=269 Identities=13% Similarity=0.033 Sum_probs=141.9
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCcc
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLK 463 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~ 463 (784)
.++|+.|++++|... ... +..+..+++|+.|++++|.++......|. .++|++|++++|.++.... ...++|+
T Consensus 53 ~~~l~~L~l~~n~i~-~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDLQNNDIS-ELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP----NLPSSLV 126 (332)
T ss_dssp CTTCCEEECCSSCCC-EEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS----SCCTTCC
T ss_pred CCCCeEEECCCCcCC-ccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCc----cccccCC
Confidence 467888888887542 111 11126778888888888877766666665 5788888888876653221 1126788
Q ss_pred EEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCccc-HhhhhhhcCcccEEEecCCCCCChH
Q 003957 464 YLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLS-LEVLKPAIKLLHSITVGLGGSLGED 541 (784)
Q Consensus 464 ~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~-~~~~~~~l~~L~~L~L~~~~~l~~~ 541 (784)
+|+++++. ++.... ..+..+++|+.|+++ +.+.... ....+..+ +
T Consensus 127 ~L~l~~n~-i~~~~~----------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~--------------- 173 (332)
T 2ft3_A 127 ELRIHDNR-IRKVPK----------------GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K--------------- 173 (332)
T ss_dssp EEECCSSC-CCCCCS----------------GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C---------------
T ss_pred EEECCCCc-cCccCH----------------hHhCCCccCCEEECCCCccccCCCCcccccCC-c---------------
Confidence 88877652 222111 123445556666663 2222100 01111112 4
Q ss_pred HHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHH
Q 003957 542 ALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLV 620 (784)
Q Consensus 542 ~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~ 620 (784)
|+.|+++.+.++.. +. .-.++|++|++++|. ....... ...+++|++|+++++ .++.....
T Consensus 174 -----------L~~L~l~~n~l~~l--~~--~~~~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~L~~N--~l~~~~~~ 235 (332)
T 2ft3_A 174 -----------LNYLRISEAKLTGI--PK--DLPETLNELHLDHNKIQAIELED-LLRYSKLYRLGLGHN--QIRMIENG 235 (332)
T ss_dssp -----------CSCCBCCSSBCSSC--CS--SSCSSCSCCBCCSSCCCCCCTTS-STTCTTCSCCBCCSS--CCCCCCTT
T ss_pred -----------cCEEECcCCCCCcc--Cc--cccCCCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCC--cCCcCChh
Confidence 44444444443331 00 011456666666652 2211111 223466777777763 44432211
Q ss_pred HHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhC------CCCCCEEEcccCCCCCCh
Q 003957 621 ILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFN------CIALEDLLLRHNGPGIPR 694 (784)
Q Consensus 621 ~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~------~~~L~~L~L~~n~~gl~~ 694 (784)
.+..+++|++|++++|.... .......+++|+.|++++|. ++..+...+.. .+.|+.|++++|.+...
T Consensus 236 -~~~~l~~L~~L~L~~N~l~~---lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~- 309 (332)
T 2ft3_A 236 -SLSFLPTLRELHLDNNKLSR---VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW- 309 (332)
T ss_dssp -GGGGCTTCCEEECCSSCCCB---CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG-
T ss_pred -HhhCCCCCCEEECCCCcCee---cChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccccc-
Confidence 23456777777777776542 11112457778888888765 55444444322 46788888888865111
Q ss_pred hHHHHHHhcCCCCceecccccc
Q 003957 695 DFILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 695 ~~~~~~l~~l~~L~~L~L~~c~ 716 (784)
...+..+..+++|+.+++++|.
T Consensus 310 ~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 310 EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GSCGGGGTTBCCSTTEEC----
T ss_pred ccCcccccccchhhhhhccccc
Confidence 2334557778888888888764
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=2.2e-16 Score=167.36 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=94.4
Q ss_pred CCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCCh-HHHHHHH--hcCCCCcEEEecCCCCCChH-HHHHHHh
Q 003957 576 RRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTN-NDLVILT--QNCSELVELSLVGCTLLSSD-SQLIISQ 650 (784)
Q Consensus 576 ~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~-~~l~~l~--~~~~~L~~L~Ls~c~~~~~~-~~~~~~~ 650 (784)
++|++|++++|. ....... ...+++|++|+++++ .+.. .++.... ..+++|++|++++|.+.... ....+..
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDN--PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTT-CCCCSSCCEEECCSC--TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred CCCcEEEeeCCCCccchHHH-hccCCCCCEEECCCC--CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence 555666665552 2111112 224466777777763 3432 2222222 56677778888777665422 2223445
Q ss_pred cCCCCcEEeecCCCCCCHHH-HHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccC
Q 003957 651 GWPGLISLHLEECGDITAYG-VTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYAD 729 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~-~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~ 729 (784)
++++|+.|++++|. ++... ...+..+++|+.|++++|.+ ..++..+. ++|+.|++++|... ++|.+..
T Consensus 226 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l----~~ip~~~~--~~L~~L~Ls~N~l~----~~p~~~~ 294 (312)
T 1wwl_A 226 ARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGL----KQVPKGLP--AKLSVLDLSYNRLD----RNPSPDE 294 (312)
T ss_dssp TTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCC----SSCCSSCC--SEEEEEECCSSCCC----SCCCTTT
T ss_pred cCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCcc----Chhhhhcc--CCceEEECCCCCCC----CChhHhh
Confidence 67788888888776 44322 22334578888899988876 34444333 78899999887665 3466778
Q ss_pred CCCCCEEEecCCCCcC
Q 003957 730 RYSLSTVKITKCKSKN 745 (784)
Q Consensus 730 ~~~L~~L~is~C~~~~ 745 (784)
+++|++|++++|+..+
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 8899999999887543
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.55 E-value=1.1e-16 Score=169.81 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=63.1
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
|++|++++|..... ......++++|+.|++++|. ++.. +..+..+++|++|++++|.+ . ..++..+..+++|+
T Consensus 199 L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~~~l~~L~~L~Ls~N~l--~-~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 199 LAFVDLSRNMLEGD--ASVLFGSDKNTQKIHLAKNS-LAFD-LGKVGLSKNLNGLDLRNNRI--Y-GTLPQGLTQLKFLH 271 (313)
T ss_dssp CSEEECCSSEEEEC--CGGGCCTTSCCSEEECCSSE-ECCB-GGGCCCCTTCCEEECCSSCC--E-ECCCGGGGGCTTCC
T ss_pred ccEEECcCCcccCc--CCHHHhcCCCCCEEECCCCc-eeee-cCcccccCCCCEEECcCCcc--c-CcCChHHhcCcCCC
Confidence 66666666654321 11122346677777777665 3311 11244677777777777755 3 34556677777777
Q ss_pred eeccccccccCCCCCcccccCCCCCCEEEecCCCC
Q 003957 709 LVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKS 743 (784)
Q Consensus 709 ~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~ 743 (784)
.|++++|+.. + .+|....+++|+.+++++|+.
T Consensus 272 ~L~Ls~N~l~-~--~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 272 SLNVSFNNLC-G--EIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp EEECCSSEEE-E--ECCCSTTGGGSCGGGTCSSSE
T ss_pred EEECcCCccc-c--cCCCCccccccChHHhcCCCC
Confidence 7777777655 2 234456667777777777763
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=9.9e-17 Score=170.50 Aligned_cols=196 Identities=14% Similarity=0.064 Sum_probs=123.1
Q ss_pred hhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCC
Q 003957 521 KPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPL 599 (784)
Q Consensus 521 ~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~ 599 (784)
+..+++|+.|+++++. ++ .++. .++|++|+++.|.+++.. ...+++|++|++++|. ....... ...+
T Consensus 76 ~~~l~~L~~L~Ls~n~-l~-----~l~~-~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~~~-~~~l 143 (317)
T 3o53_A 76 LESLSTLRTLDLNNNY-VQ-----ELLV-GPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLD-EGCR 143 (317)
T ss_dssp ETTCTTCCEEECCSSE-EE-----EEEE-CTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCCCSGGGBC-TGGG
T ss_pred hhhcCCCCEEECcCCc-cc-----cccC-CCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCCCCccchh-hhcc
Confidence 3445667777777662 22 2222 478888888877776642 2346788888888883 3222222 2345
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
++|++|++++ +.++......+...+++|++|++++|.+.... ....+++|+.|++++|. ++.... .+..+++
T Consensus 144 ~~L~~L~Ls~--N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~l~~L~~L~Ls~N~-l~~l~~-~~~~l~~ 215 (317)
T 3o53_A 144 SRVQYLDLKL--NEIDTVNFAELAASSDTLEHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNK-LAFMGP-EFQSAAG 215 (317)
T ss_dssp SSEEEEECTT--SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE----CCCCCTTCCEEECCSSC-CCEECG-GGGGGTT
T ss_pred CCCCEEECCC--CCCCcccHHHHhhccCcCCEEECCCCcCcccc----cccccccCCEEECCCCc-CCcchh-hhcccCc
Confidence 7888888888 45665544445556778888888888765421 01136778888888776 443222 2556778
Q ss_pred CCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCC
Q 003957 680 LEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCK 742 (784)
Q Consensus 680 L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~ 742 (784)
|+.|++++|.+ ..++..+..+++|+.|++++|+...+ .+|. +..++.|+.|++++|+
T Consensus 216 L~~L~L~~N~l----~~l~~~~~~l~~L~~L~l~~N~~~~~--~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 216 VTWISLRNNKL----VLIEKALRFSQNLEHFDLRGNGFHCG--TLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CSEEECTTSCC----CEECTTCCCCTTCCEEECTTCCCBHH--HHHHHHHTCHHHHHHHHHHHH
T ss_pred ccEEECcCCcc----cchhhHhhcCCCCCEEEccCCCccCc--CHHHHHhccccceEEECCCch
Confidence 88888888866 44555567777888888887766522 2344 6667777777777554
No 64
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.52 E-value=6.7e-16 Score=163.67 Aligned_cols=252 Identities=12% Similarity=0.020 Sum_probs=143.1
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
.+++.|+++++.+... ..+|..+..+++|++|+++++..++... +..+..+++|+.|++++|
T Consensus 50 ~~l~~L~L~~~~l~~~-----------------~~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-----------------YPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCCCSSC-----------------EECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEE
T ss_pred ceEEEEECCCCCccCC-----------------cccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCC
Confidence 4677788887766520 0144556788999999998533322211 112368899999999998
Q ss_pred cCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCC
Q 003957 423 QLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTR 501 (784)
Q Consensus 423 ~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 501 (784)
.++......+. .++|++|++++|.++...... +..+++|++|+++++.. +. .+...+..++
T Consensus 112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l-~~----------------~~p~~l~~l~ 173 (313)
T 1ogq_A 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI-SG----------------AIPDSYGSFS 173 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCC-EE----------------ECCGGGGCCC
T ss_pred eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCcc-cC----------------cCCHHHhhhh
Confidence 88766555555 588999999988776433222 35778888888877632 21 1122444544
Q ss_pred -CccEEEecc-ccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 502 -KLEEIVLGW-GFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 502 -~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
.|++|+++. .+...... .+.. ++ |+.|+++.|.+++. .+..+..+++|+
T Consensus 174 ~~L~~L~L~~N~l~~~~~~-~~~~--------------------------l~-L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 224 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPP-TFAN--------------------------LN-LAFVDLSRNMLEGD-ASVLFGSDKNTQ 224 (313)
T ss_dssp TTCCEEECCSSEEEEECCG-GGGG--------------------------CC-CSEEECCSSEEEEC-CGGGCCTTSCCS
T ss_pred hcCcEEECcCCeeeccCCh-HHhC--------------------------Cc-ccEEECcCCcccCc-CCHHHhcCCCCC
Confidence 566666632 22211111 1122 22 55555554444432 223345566677
Q ss_pred EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEe
Q 003957 580 VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLH 659 (784)
Q Consensus 580 ~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~ 659 (784)
.|++++|........ ...+++|++|+++++ .++.. +...+..+++|++|++++|......+. . ..+++|+.|+
T Consensus 225 ~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N--~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~-~~l~~L~~l~ 297 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN--RIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIPQ--G-GNLQRFDVSA 297 (313)
T ss_dssp EEECCSSEECCBGGG-CCCCTTCCEEECCSS--CCEEC-CCGGGGGCTTCCEEECCSSEEEEECCC--S-TTGGGSCGGG
T ss_pred EEECCCCceeeecCc-ccccCCCCEEECcCC--cccCc-CChHHhcCcCCCEEECcCCcccccCCC--C-ccccccChHH
Confidence 777766621111111 234477777777773 45422 122334577888888888766532111 1 3467788888
Q ss_pred ecCCCCC
Q 003957 660 LEECGDI 666 (784)
Q Consensus 660 L~~c~~i 666 (784)
+.+|+.+
T Consensus 298 l~~N~~l 304 (313)
T 1ogq_A 298 YANNKCL 304 (313)
T ss_dssp TCSSSEE
T ss_pred hcCCCCc
Confidence 8777643
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.51 E-value=2.4e-15 Score=160.45 Aligned_cols=222 Identities=18% Similarity=0.145 Sum_probs=150.4
Q ss_pred CCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCC
Q 003957 500 TRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRL 578 (784)
Q Consensus 500 l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L 578 (784)
.+.++.|++ ++.+..++. .+..+++|++|+++++. +. .....++ .+++|++|+++.|.++. ++..+.++++|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~n~-l~-~lp~~~~-~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD--QAFRLSHLQHMTIDAAG-LM-ELPDTMQ-QFAGLETLTLARNPLRA--LPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSCCSSCCS--CGGGGTTCSEEEEESSC-CC-CCCSCGG-GGTTCSEEEEESCCCCC--CCGGGGGCTTC
T ss_pred ccceeEEEccCCCchhcCh--hhhhCCCCCEEECCCCC-cc-chhHHHh-ccCCCCEEECCCCcccc--CcHHHhcCcCC
Confidence 467899999 555554333 35558889999999873 33 1112233 37889999998888773 45557788999
Q ss_pred cEEEeccc-CChhHHHHhh--------cCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHH
Q 003957 579 QVLAICHC-LGDLSISSFK--------LPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIIS 649 (784)
Q Consensus 579 ~~L~Ls~c-~~~~~~~~l~--------~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~ 649 (784)
++|++++| ........+. ..+++|++|+++++ .++ .+...+.++++|++|++++|....- .. ..
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n--~l~--~lp~~l~~l~~L~~L~L~~N~l~~l--~~-~l 225 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT--GIR--SLPASIANLQNLKSLKIRNSPLSAL--GP-AI 225 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE--CCC--CCCGGGGGCTTCCEEEEESSCCCCC--CG-GG
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC--CcC--cchHhhcCCCCCCEEEccCCCCCcC--ch-hh
Confidence 99999987 2222222221 23688888888884 555 2323355788888888888876641 11 23
Q ss_pred hcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-cc
Q 003957 650 QGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YA 728 (784)
Q Consensus 650 ~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~ 728 (784)
..+++|+.|++++|+..+ ..+..+.++++|+.|++++|.+ . ..++..+..+++|+.|+|++|+... .+|. +.
T Consensus 226 ~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~--~-~~~p~~~~~l~~L~~L~L~~n~~~~---~iP~~l~ 298 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSN--L-LTLPLDIHRLTQLEKLDLRGCVNLS---RLPSLIA 298 (328)
T ss_dssp GGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTT--C-CBCCTTGGGCTTCCEEECTTCTTCC---CCCGGGG
T ss_pred ccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCc--h-hhcchhhhcCCCCCEEeCCCCCchh---hccHHHh
Confidence 467888888888887443 3334456788888888888754 3 4555567888888888888888773 3577 88
Q ss_pred CCCCCCEEEecCCC
Q 003957 729 DRYSLSTVKITKCK 742 (784)
Q Consensus 729 ~~~~L~~L~is~C~ 742 (784)
++++|+.+++....
T Consensus 299 ~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 299 QLPANCIILVPPHL 312 (328)
T ss_dssp GSCTTCEEECCGGG
T ss_pred hccCceEEeCCHHH
Confidence 88888888887543
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.50 E-value=6.6e-15 Score=164.59 Aligned_cols=224 Identities=14% Similarity=0.080 Sum_probs=164.8
Q ss_pred CCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 501 RKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 501 ~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
+.++.|+++ +.+..+... .+..+++|+.|+++++ .+.......+. .+++|+.|+++.|.++.. ....+.++++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n-~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRN-SIRQIEVGAFN-GLASLNTLELFDNWLTVI-PSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSSCCSBC-CTTTSSSCTTCC
T ss_pred CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCC-ccCCcChhhcc-CcccCCEEECCCCcCCcc-ChhhhcccCCCC
Confidence 578999994 455544433 4677899999999988 34332222333 378899999988887753 223467789999
Q ss_pred EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEe
Q 003957 580 VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLH 659 (784)
Q Consensus 580 ~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~ 659 (784)
+|++++|............+++|++|++++| +.++.... ..+.++++|+.|++++|.+..-. . ...+++|+.|+
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~-~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~---~-~~~l~~L~~L~ 224 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGEL-KKLEYISE-GAFEGLFNLKYLNLGMCNIKDMP---N-LTPLVGLEELE 224 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCC-TTCCEECT-TTTTTCTTCCEEECTTSCCSSCC---C-CTTCTTCCEEE
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCC-CCccccCh-hhccCCCCCCEEECCCCcccccc---c-ccccccccEEE
Confidence 9999999322222333456799999999997 55553322 23456889999999999876521 1 24688999999
Q ss_pred ecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEE
Q 003957 660 LEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVK 737 (784)
Q Consensus 660 L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~ 737 (784)
|++|. ++...+..+.++++|+.|++++|.+ . ...+..+.++++|+.|+|++|... .+|. +..+++|+.|+
T Consensus 225 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 225 MSGNH-FPEIRPGSFHGLSSLKKLWVMNSQV--S-LIERNAFDGLASLVELNLAHNNLS----SLPHDLFTPLRYLVELH 296 (452)
T ss_dssp CTTSC-CSEECGGGGTTCTTCCEEECTTSCC--C-EECTTTTTTCTTCCEEECCSSCCS----CCCTTSSTTCTTCCEEE
T ss_pred CcCCc-CcccCcccccCccCCCEEEeCCCcC--c-eECHHHhcCCCCCCEEECCCCcCC----ccChHHhccccCCCEEE
Confidence 99987 6666666778999999999999976 4 444566888999999999998766 4454 78899999999
Q ss_pred ecCCC
Q 003957 738 ITKCK 742 (784)
Q Consensus 738 is~C~ 742 (784)
+++|+
T Consensus 297 L~~Np 301 (452)
T 3zyi_A 297 LHHNP 301 (452)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 99986
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.50 E-value=2e-14 Score=165.45 Aligned_cols=248 Identities=18% Similarity=0.101 Sum_probs=161.6
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
++|+.|++++|.++. +|. .+++|++|+|++|..-. ++ ..+++|+.|++++|
T Consensus 61 ~~L~~L~L~~N~l~~--------------------lp~---~l~~L~~L~Ls~N~l~~---lp---~~l~~L~~L~Ls~N 111 (622)
T 3g06_A 61 AHITTLVIPDNNLTS--------------------LPA---LPPELRTLEVSGNQLTS---LP---VLPPGLLELSIFSN 111 (622)
T ss_dssp TTCSEEEECSCCCSC--------------------CCC---CCTTCCEEEECSCCCSC---CC---CCCTTCCEEEECSC
T ss_pred CCCcEEEecCCCCCC--------------------CCC---cCCCCCEEEcCCCcCCc---CC---CCCCCCCEEECcCC
Confidence 567777777776654 232 45677777777765321 11 15677777877777
Q ss_pred cCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCC
Q 003957 423 QLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRK 502 (784)
Q Consensus 423 ~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 502 (784)
.++.... ..++|+.|++++|.++... ..+++|++|++++| .++..+
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp-----~~l~~L~~L~Ls~N-~l~~l~------------------------- 157 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQLTSLP-----VLPPGLQELSVSDN-QLASLP------------------------- 157 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSS-CCSCCC-------------------------
T ss_pred cCCCCCC---CCCCcCEEECCCCCCCcCC-----CCCCCCCEEECcCC-cCCCcC-------------------------
Confidence 6665332 2467888888888765422 23478888888776 222110
Q ss_pred ccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEE
Q 003957 503 LEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLA 582 (784)
Q Consensus 503 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~ 582 (784)
....+|+.|+++++ .++. ++..+++|+.|+++.|.++.. ....++|+.|+
T Consensus 158 -------------------~~~~~L~~L~L~~N-~l~~-----l~~~~~~L~~L~Ls~N~l~~l-----~~~~~~L~~L~ 207 (622)
T 3g06_A 158 -------------------ALPSELCKLWAYNN-QLTS-----LPMLPSGLQELSVSDNQLASL-----PTLPSELYKLW 207 (622)
T ss_dssp -------------------CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSCC-----CCCCTTCCEEE
T ss_pred -------------------CccCCCCEEECCCC-CCCC-----CcccCCCCcEEECCCCCCCCC-----CCccchhhEEE
Confidence 01234555555554 2221 224467888888887777652 12357899999
Q ss_pred ecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecC
Q 003957 583 ICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEE 662 (784)
Q Consensus 583 Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~ 662 (784)
+++|... .+...+++|++|++++ +.++... ..+++|+.|++++|.+.. +...+++|+.|+|++
T Consensus 208 L~~N~l~----~l~~~~~~L~~L~Ls~--N~L~~lp-----~~l~~L~~L~Ls~N~L~~------lp~~~~~L~~L~Ls~ 270 (622)
T 3g06_A 208 AYNNRLT----SLPALPSGLKELIVSG--NRLTSLP-----VLPSELKELMVSGNRLTS------LPMLPSGLLSLSVYR 270 (622)
T ss_dssp CCSSCCS----SCCCCCTTCCEEECCS--SCCSCCC-----CCCTTCCEEECCSSCCSC------CCCCCTTCCEEECCS
T ss_pred CcCCccc----ccCCCCCCCCEEEccC--CccCcCC-----CCCCcCcEEECCCCCCCc------CCcccccCcEEeCCC
Confidence 9998321 1223458999999999 4676422 567899999999997764 112578999999999
Q ss_pred CCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 663 CGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 663 c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
|. ++.. +..+.++++|+.|+|++|.+ . ...+..+..++
T Consensus 271 N~-L~~l-p~~l~~l~~L~~L~L~~N~l--~-~~~~~~l~~L~ 308 (622)
T 3g06_A 271 NQ-LTRL-PESLIHLSSETTVNLEGNPL--S-ERTLQALREIT 308 (622)
T ss_dssp SC-CCSC-CGGGGGSCTTCEEECCSCCC--C-HHHHHHHHHHH
T ss_pred CC-CCcC-CHHHhhccccCEEEecCCCC--C-CcCHHHHHhcc
Confidence 87 6532 34577899999999999976 6 66666665543
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.49 E-value=1.1e-15 Score=161.68 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=40.5
Q ss_pred CCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCC
Q 003957 652 WPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADR 730 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~ 730 (784)
+++|+.|++++|. ++...+..+.++++|+.|++++|.+ . ......+..+++|+.|++++|.... . .|. +..+
T Consensus 174 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~~~~~~~l~~L~~L~L~~N~l~~-~--~~~~~~~~ 246 (306)
T 2z66_A 174 LRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNF--F-SLDTFPYKCLNSLQVLDYSLNHIMT-S--KKQELQHF 246 (306)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCC--S-BCCSGGGTTCTTCCEEECTTSCCCB-C--SSSSCCCC
T ss_pred CcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCcc--C-ccChhhccCcccCCEeECCCCCCcc-c--CHHHHHhh
Confidence 4445555555443 3333233344555555666655543 2 1112234555666666666554441 1 122 4444
Q ss_pred -CCCCEEEecCCCC
Q 003957 731 -YSLSTVKITKCKS 743 (784)
Q Consensus 731 -~~L~~L~is~C~~ 743 (784)
++|++|++++|+.
T Consensus 247 ~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 247 PSSLAFLNLTQNDF 260 (306)
T ss_dssp CTTCCEEECTTCCE
T ss_pred hccCCEEEccCCCe
Confidence 3666666666654
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.49 E-value=7.4e-15 Score=163.59 Aligned_cols=224 Identities=14% Similarity=0.093 Sum_probs=162.1
Q ss_pred CCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 501 RKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 501 ~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
+.++.|++ ++.+..+... .+..+++|+.|+++++ .+.......+. .+++|++|+++.|.++... ...+.++++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n-~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRN-HIRTIEIGAFN-GLANLNTLELFDNRLTTIP-NGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSS-CCCEECGGGGT-TCSSCCEEECCSSCCSSCC-TTTSCSCSSCC
T ss_pred CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCC-cCCccChhhcc-CCccCCEEECCCCcCCeeC-HhHhhccccCc
Confidence 46888999 4455554443 4667889999999988 33332222333 3788999999888877532 22467789999
Q ss_pred EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEe
Q 003957 580 VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLH 659 (784)
Q Consensus 580 ~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~ 659 (784)
+|++++|............+++|++|++++| +.++.... ..+.++++|++|++++|.+..-. . ...+++|+.|+
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~-~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~---~-~~~l~~L~~L~ 213 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGEL-KRLSYISE-GAFEGLSNLRYLNLAMCNLREIP---N-LTPLIKLDELD 213 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCC-TTCCEECT-TTTTTCSSCCEEECTTSCCSSCC---C-CTTCSSCCEEE
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCC-CCcceeCc-chhhcccccCeecCCCCcCcccc---c-cCCCcccCEEE
Confidence 9999998322222233446699999999987 45543221 23457889999999999776421 1 24688999999
Q ss_pred ecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEE
Q 003957 660 LEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVK 737 (784)
Q Consensus 660 L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~ 737 (784)
|++|. ++...+..+.++++|+.|++++|.+ . ...+..+..+++|+.|+|++|... .+|. +..+++|+.|+
T Consensus 214 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 214 LSGNH-LSAIRPGSFQGLMHLQKLWMIQSQI--Q-VIERNAFDNLQSLVEINLAHNNLT----LLPHDLFTPLHHLERIH 285 (440)
T ss_dssp CTTSC-CCEECTTTTTTCTTCCEEECTTCCC--C-EECTTSSTTCTTCCEEECTTSCCC----CCCTTTTSSCTTCCEEE
T ss_pred CCCCc-cCccChhhhccCccCCEEECCCCce--e-EEChhhhcCCCCCCEEECCCCCCC----ccChhHhccccCCCEEE
Confidence 99986 7666566777899999999999975 4 444566888999999999998766 3454 78899999999
Q ss_pred ecCCC
Q 003957 738 ITKCK 742 (784)
Q Consensus 738 is~C~ 742 (784)
+++|+
T Consensus 286 L~~Np 290 (440)
T 3zyj_A 286 LHHNP 290 (440)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 99976
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=8.4e-15 Score=164.90 Aligned_cols=242 Identities=16% Similarity=0.074 Sum_probs=156.8
Q ss_pred hCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCC
Q 003957 410 QARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSY 488 (784)
Q Consensus 410 ~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 488 (784)
.+++|+.|++++|.+++.....|. .++|++|+|++|.+++... +..+++|++|++++| .++..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l------------ 95 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNN-YVQEL------------ 95 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSS-EEEEE------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCC-cCCCC------------
Confidence 345788888888887776666665 5788888888887654332 467788888888776 22221
Q ss_pred CchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHH
Q 003957 489 PCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSII 568 (784)
Q Consensus 489 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l 568 (784)
.. .++|+.|++++|. ++.. ....+++|+.|+++.|.+++..
T Consensus 96 ---------~~------------------------~~~L~~L~L~~N~-l~~~----~~~~l~~L~~L~L~~N~l~~~~- 136 (487)
T 3oja_A 96 ---------LV------------------------GPSIETLHAANNN-ISRV----SCSRGQGKKNIYLANNKITMLR- 136 (487)
T ss_dssp ---------EE------------------------CTTCCEEECCSSC-CCCE----EECCCSSCEEEECCSSCCCSGG-
T ss_pred ---------CC------------------------CCCcCEEECcCCc-CCCC----CccccCCCCEEECCCCCCCCCC-
Confidence 11 1345555555541 2111 0123566777777776666532
Q ss_pred HHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHH
Q 003957 569 INILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLI 647 (784)
Q Consensus 569 ~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~ 647 (784)
+..+.++++|+.|++++| +.+..+..+...+++|++|+++++ .++... . ...+++|+.|++++|.+.... ..
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N--~l~~~~--~-~~~l~~L~~L~Ls~N~l~~~~--~~ 209 (487)
T 3oja_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN--FIYDVK--G-QVVFAKLKTLDLSSNKLAFMG--PE 209 (487)
T ss_dssp GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS--CCCEEE--C-CCCCTTCCEEECCSSCCCEEC--GG
T ss_pred chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC--cccccc--c-cccCCCCCEEECCCCCCCCCC--Hh
Confidence 223456778888888888 444445555545688888888884 565431 1 124778999999998765421 11
Q ss_pred HHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 648 ISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 648 ~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
...+++|+.|+|++|. ++. .+..+..+++|+.|++++|.+ ....++..+..++.|+.+.+..+...
T Consensus 210 -~~~l~~L~~L~Ls~N~-l~~-lp~~l~~l~~L~~L~l~~N~l--~c~~~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 210 -FQSAAGVTWISLRNNK-LVL-IEKALRFSQNLEHFDLRGNGF--HCGTLRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp -GGGGTTCSEEECTTSC-CCE-ECTTCCCCTTCCEEECTTCCB--CHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HcCCCCccEEEecCCc-Ccc-cchhhccCCCCCEEEcCCCCC--cCcchHHHHHhCCCCcEEeccccccc
Confidence 3467889999999877 553 223355789999999999976 43477788888999999988754443
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.48 E-value=4.4e-15 Score=165.36 Aligned_cols=130 Identities=19% Similarity=0.182 Sum_probs=69.9
Q ss_pred CCCCcEEEeee-eccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCC
Q 003957 550 CPMLELVVLYF-QVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCS 627 (784)
Q Consensus 550 ~~~L~~L~L~~-~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~ 627 (784)
+++|+.|+++. +.++.. ....+.++++|++|++++|. ... .. ...+++|++|++++ +.++.... ..+.+++
T Consensus 159 l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~--N~l~~~~~-~~~~~l~ 231 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLAMCNLREI--PN-LTPLIKLDELDLSG--NHLSAIRP-GSFQGLM 231 (440)
T ss_dssp CTTCCEEECCCCTTCCEE-CTTTTTTCSSCCEEECTTSCCSSC--CC-CTTCSSCCEEECTT--SCCCEECT-TTTTTCT
T ss_pred CcccCEeCCCCCCCccee-CcchhhcccccCeecCCCCcCccc--cc-cCCCcccCEEECCC--CccCccCh-hhhccCc
Confidence 67788888854 444332 12235667778888877772 211 11 23446677777776 34543211 2234566
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNG 689 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~ 689 (784)
+|+.|++++|.+.... .....++++|+.|+|++|. ++......+..+++|+.|+|++|.
T Consensus 232 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIE--RNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTCCCCEEC--TTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCCEEECCCCceeEEC--hhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 6777777666544311 1112345666666666654 443333344456666666666654
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.47 E-value=5.3e-15 Score=165.35 Aligned_cols=130 Identities=19% Similarity=0.174 Sum_probs=69.9
Q ss_pred CCCCcEEEeee-eccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCC
Q 003957 550 CPMLELVVLYF-QVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCS 627 (784)
Q Consensus 550 ~~~L~~L~L~~-~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~ 627 (784)
+++|+.|+++. +.++.. ....+.++++|+.|++++|. .+. .. ...+++|++|++++ +.++.... ..+.+++
T Consensus 170 l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~--N~l~~~~~-~~~~~l~ 242 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNIKDM--PN-LTPLVGLEELEMSG--NHFPEIRP-GSFHGLS 242 (452)
T ss_dssp CTTCCEEECCCCTTCCEE-CTTTTTTCTTCCEEECTTSCCSSC--CC-CTTCTTCCEEECTT--SCCSEECG-GGGTTCT
T ss_pred CCcccEEeCCCCCCcccc-ChhhccCCCCCCEEECCCCccccc--cc-ccccccccEEECcC--CcCcccCc-ccccCcc
Confidence 67788888853 444332 12235567777777777772 211 11 23446677777776 34543221 2234566
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNG 689 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~ 689 (784)
+|+.|++++|.+.... .....++++|+.|+|++|. ++......+..+++|+.|+|++|.
T Consensus 243 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCcCceEC--HHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 6777777766554311 1112346666777776664 443333334456666666666654
No 73
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=1.3e-14 Score=154.84 Aligned_cols=128 Identities=22% Similarity=0.119 Sum_probs=85.3
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEec
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLS 420 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls 420 (784)
++++|+.|++++|.++. +|..+..+++|++|++++|.... ++..+..+++|+.|+++
T Consensus 181 ~l~~L~~L~L~~n~l~~--------------------lp~~l~~l~~L~~L~L~~N~l~~---l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRS--------------------LPASIANLQNLKSLKIRNSPLSA---LGPAIHHLPKLEELDLR 237 (328)
T ss_dssp ESTTCCEEEEEEECCCC--------------------CCGGGGGCTTCCEEEEESSCCCC---CCGGGGGCTTCCEEECT
T ss_pred cCCCCCEEECcCCCcCc--------------------chHhhcCCCCCCEEEccCCCCCc---CchhhccCCCCCEEECc
Confidence 46788888888887764 45555778888888888876532 11123677888888888
Q ss_pred CCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhc
Q 003957 421 GTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGR 499 (784)
Q Consensus 421 ~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (784)
+|.+.......+. .++|++|++++|.+....... +..+++|++|++++|..... ++..+..
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~-----------------iP~~l~~ 299 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSR-----------------LPSLIAQ 299 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCC-----------------CCGGGGG
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhh-----------------ccHHHhh
Confidence 8776665555554 578888888887554433222 36778888888888765432 2345666
Q ss_pred CCCccEEEec
Q 003957 500 TRKLEEIVLG 509 (784)
Q Consensus 500 l~~L~~L~L~ 509 (784)
+++|+.+.+.
T Consensus 300 L~~L~~l~l~ 309 (328)
T 4fcg_A 300 LPANCIILVP 309 (328)
T ss_dssp SCTTCEEECC
T ss_pred ccCceEEeCC
Confidence 6666666663
No 74
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.44 E-value=9.1e-15 Score=154.42 Aligned_cols=231 Identities=16% Similarity=0.046 Sum_probs=128.3
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccc-hhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKR-NFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSG 421 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~ 421 (784)
++|+.|++++|.++. +| ..+..+++|++|++++|..-...........+++|+.|++++
T Consensus 28 ~~l~~L~L~~n~l~~--------------------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 28 SSATRLELESNKLQS--------------------LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TTCCEEECCSSCCCC--------------------CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CCCCEEECCCCccCc--------------------cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 467777777776654 22 234678899999998876421110011124688899999998
Q ss_pred CcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcC
Q 003957 422 TQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRT 500 (784)
Q Consensus 422 ~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 500 (784)
|.++..... +. .++|++|++++|.++.......+..+++|++|+++++.. .... ...+..+
T Consensus 88 n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~----------------~~~~~~l 149 (306)
T 2z66_A 88 NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAF----------------NGIFNGL 149 (306)
T ss_dssp CSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECS----------------TTTTTTC
T ss_pred CccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-Cccc----------------hhhcccC
Confidence 877643322 33 578888888888766544323346778888888877632 2111 1133445
Q ss_pred CCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 501 RKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 501 ~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
++|++|+++ +.+........+.. +++|+.|+++.+.+++.. ...+..+++|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~--------------------------l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~ 202 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTE--------------------------LRNLTFLDLSQCQLEQLS-PTAFNSLSSLQ 202 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTT--------------------------CTTCCEEECTTSCCCEEC-TTTTTTCTTCC
T ss_pred cCCCEEECCCCccccccchhHHhh--------------------------CcCCCEEECCCCCcCCcC-HHHhcCCCCCC
Confidence 556666663 22222111122233 445555555544444321 22344566677
Q ss_pred EEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcC-CCCcEEEecCCCCCCh
Q 003957 580 VLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNC-SELVELSLVGCTLLSS 642 (784)
Q Consensus 580 ~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~-~~L~~L~Ls~c~~~~~ 642 (784)
+|++++| +.+..... ...+++|++|+++++ .++......+ ..+ ++|+.|++++|+...+
T Consensus 203 ~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N--~l~~~~~~~~-~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLN--HIMTSKKQEL-QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp EEECTTSCCSBCCSGG-GTTCTTCCEEECTTS--CCCBCSSSSC-CCCCTTCCEEECTTCCEECS
T ss_pred EEECCCCccCccChhh-ccCcccCCEeECCCC--CCcccCHHHH-HhhhccCCEEEccCCCeecc
Confidence 7777666 22211111 234577777777773 4543322222 233 4788888888876543
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.41 E-value=8.3e-14 Score=147.35 Aligned_cols=231 Identities=15% Similarity=0.032 Sum_probs=142.0
Q ss_pred CCccEEEec-cccCcccHhhhhh--hcCcccEEEecCCCCCChHHHHHhh-ccCCCCcEEEeeeeccChHHH---HHHHh
Q 003957 501 RKLEEIVLG-WGFSFLSLEVLKP--AIKLLHSITVGLGGSLGEDALRLLP-TTCPMLELVVLYFQVMSDSII---INILE 573 (784)
Q Consensus 501 ~~L~~L~L~-~~~~~~~~~~~~~--~l~~L~~L~L~~~~~l~~~~l~~l~-~~~~~L~~L~L~~~~i~~~~l---~~~~~ 573 (784)
..++.+.+. ..++......+.. .+++|+.|+++++. +.......+. ..+++|++|+++.|.+++... ...+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 456677773 3333322222222 24568888888873 2222111221 346788888888887775211 12233
Q ss_pred hCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCCh-HHHHH--HHhcCCCCcEEEecCCCCCChHHH-HHHH
Q 003957 574 SLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTN-NDLVI--LTQNCSELVELSLVGCTLLSSDSQ-LIIS 649 (784)
Q Consensus 574 ~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~-~~l~~--l~~~~~~L~~L~Ls~c~~~~~~~~-~~~~ 649 (784)
.+++|++|++++|............+++|++|+++++ .+.. .++.. ....+++|++|++++|....-... ..+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN--PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC--TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC--CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 6888899999888322222223345688999999884 4443 23321 124678899999998877542221 2234
Q ss_pred hcCCCCcEEeecCCCCCCHHHHHHhhC---CCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc
Q 003957 650 QGWPGLISLHLEECGDITAYGVTSLFN---CIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD 726 (784)
Q Consensus 650 ~~~~~L~~L~L~~c~~i~~~~~~~l~~---~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~ 726 (784)
.++++|+.|+|++|. ++...+..+.. +++|+.|++++|.+ ..++..+ .++|+.|++++|... ++|.
T Consensus 221 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l----~~lp~~~--~~~L~~L~Ls~N~l~----~~~~ 289 (310)
T 4glp_A 221 AAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGL----EQVPKGL--PAKLRVLDLSSNRLN----RAPQ 289 (310)
T ss_dssp HHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCC----CSCCSCC--CSCCSCEECCSCCCC----SCCC
T ss_pred hcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCC----Cchhhhh--cCCCCEEECCCCcCC----CCch
Confidence 567889999998877 55433333433 37899999999876 3344333 378999999888766 3455
Q ss_pred ccCCCCCCEEEecCCCCcC
Q 003957 727 YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 727 ~~~~~~L~~L~is~C~~~~ 745 (784)
+..+++|+.|++++|+..+
T Consensus 290 ~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTSCCCCSCEECSSTTTSC
T ss_pred hhhCCCccEEECcCCCCCC
Confidence 6777889999998887654
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.41 E-value=4e-13 Score=141.85 Aligned_cols=189 Identities=19% Similarity=0.139 Sum_probs=111.8
Q ss_pred cCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCc
Q 003957 524 IKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNL 602 (784)
Q Consensus 524 l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L 602 (784)
+++|+.|+++++. +.. +..+. .+++|+.|+++.+.+++... +..+++|++|++++| +.+. .. ...+++|
T Consensus 40 l~~L~~L~l~~~~-i~~--l~~~~-~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTT--IEGVQ-YLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNV--SA-IAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSC-CCC--CTTGG-GCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCC--GG-GTTCTTC
T ss_pred cCCcCEEEeeCCC-ccC--chhhh-ccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCc--hh-hcCCCCC
Confidence 4456666666552 221 11222 25667777776666655322 566677777777776 2221 12 2345777
Q ss_pred cEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCE
Q 003957 603 RKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALED 682 (784)
Q Consensus 603 ~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~ 682 (784)
++|++++| .++... . +..+++|++|++++|....... ...+++|+.|++++|. ++.... +..+++|+.
T Consensus 110 ~~L~l~~n--~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 110 KTLDLTST--QITDVT--P-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTT 177 (308)
T ss_dssp CEEECTTS--CCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCE
T ss_pred CEEECCCC--CCCCch--h-hcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCc-CCCChh--hcCCCCCCE
Confidence 77777774 454422 1 4566777777777776554221 3457777777777765 443222 556777777
Q ss_pred EEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEecCCCC
Q 003957 683 LLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKS 743 (784)
Q Consensus 683 L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~ 743 (784)
|++++|.+ . .++. +..+++|+.|++++|... .++++..+++|+.|++++|+.
T Consensus 178 L~l~~n~l--~--~~~~-l~~l~~L~~L~L~~N~l~----~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 178 LKADDNKI--S--DISP-LASLPNLIEVHLKNNQIS----DVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EECCSSCC--C--CCGG-GGGCTTCCEEECTTSCCC----BCGGGTTCTTCCEEEEEEEEE
T ss_pred EECCCCcc--C--cChh-hcCCCCCCEEEccCCccC----ccccccCCCCCCEEEccCCee
Confidence 77777755 2 2222 667777777777777655 334466777777777777764
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=1.4e-14 Score=153.53 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=89.8
Q ss_pred CCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCc----cCHHHHHHH--HHhCCCCCEEEeeCCCCCHHHHH
Q 003957 288 PSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVS----VTDVCISNL--IRRCVKLQSIIVCDTSFGVYSIR 361 (784)
Q Consensus 288 ~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~----l~~~~l~~l--~~~~~~L~~L~Ls~~~i~~~~l~ 361 (784)
+..++|++|++++|.. .. ...+.. .|++|+++++.. +........ ..++++|++|++++|.++..
T Consensus 40 ~~~~~L~~l~l~~n~l-~~--p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--- 110 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-AD--LGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT--- 110 (312)
T ss_dssp EEEEECTTHHHHCCTT-CC--CHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC---
T ss_pred ccCCCceeEeeccccc-cc--HHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch---
Confidence 3446788888888765 22 122222 266666666432 122111111 12578999999999887641
Q ss_pred HhhccCCccCcccccccchhh--hcCCCccEEEecCCCCCCH-HHHHHHH-HhCccccEEEecCCcCchhhhhhcc-cCC
Q 003957 362 ALCSEVPYCNSSALCGKRNFN--TLASNLQMLHMACCNGVDG-MYLLELM-CQARKLKSLCLSGTQLADKALYNFS-GSS 436 (784)
Q Consensus 362 ~l~~~l~~~~~~~~~~~~~~~--~~l~~L~~L~L~~c~~l~~-~~l~~l~-~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~ 436 (784)
.|..+ ..+++|++|++++|..... ..+..+. ...++|+.|++++|.++......|. .++
T Consensus 111 ----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 111 ----------------APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp ----------------CCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred ----------------hHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 23322 6788899999988764321 1111110 0127888888888877766655555 567
Q ss_pred cCEEEecCCccchh-hHHHHH--hcCCCccEEeccCC
Q 003957 437 LEMLDVSDTMISGA-ALAYMV--HGNSGLKYLNARGC 470 (784)
Q Consensus 437 L~~L~Ls~~~i~~~-~l~~~~--~~l~~L~~L~L~~c 470 (784)
|++|++++|.+.+. ...... ..+++|++|+++++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 77777777765432 121111 45566666666554
No 78
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.41 E-value=3.1e-14 Score=148.65 Aligned_cols=181 Identities=18% Similarity=0.102 Sum_probs=113.3
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+++|++|+++.+.+++.. ...+.++++|++|++++|. ...........+++|++|+++++ .++... ...+.++++
T Consensus 55 ~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~-~~~~~~l~~ 130 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC--GLQELG-PGLFRGLAA 130 (285)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS--CCCCCC-TTTTTTCTT
T ss_pred CCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC--cCCEEC-HhHhhCCcC
Confidence 566666666655555421 2234566777777777762 22221222334577777777774 444321 122345778
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
|++|++++|...... .....++++|+.|++++|. ++......+.++++|+.|++++|.+ . ...+..+..+++|+
T Consensus 131 L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l--~-~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 131 LQYLYLQDNALQALP--DDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRV--A-HVHPHAFRDLGRLM 204 (285)
T ss_dssp CCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC--C-EECTTTTTTCTTCC
T ss_pred CCEEECCCCcccccC--HhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcc--c-ccCHhHccCccccc
Confidence 888888887665311 1122457788888888875 5544444466788888888888865 4 44456677788888
Q ss_pred eeccccccccCCCCCccc--ccCCCCCCEEEecCCCCc
Q 003957 709 LVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 709 ~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~ 744 (784)
.|++++|... .++. +..+++|++|++++|+..
T Consensus 205 ~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 205 TLYLFANNLS----ALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCCS----CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred EeeCCCCcCC----cCCHHHcccCcccCEEeccCCCcc
Confidence 8888887665 3343 777888888888888754
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=1e-13 Score=156.10 Aligned_cols=170 Identities=12% Similarity=0.090 Sum_probs=90.2
Q ss_pred hhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCC
Q 003957 382 NTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSG 461 (784)
Q Consensus 382 ~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~ 461 (784)
+..+++|+.|+|++|....... +..+++|+.|++++|.+++... .++|++|++++|.++.... ..+++
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~----~~l~~ 121 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC----SRGQG 121 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEE----CCCSS
T ss_pred HhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCc----cccCC
Confidence 3556666666666655321111 2556666777776665554321 3667777777776654332 23566
Q ss_pred ccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCCh
Q 003957 462 LKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGE 540 (784)
Q Consensus 462 L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 540 (784)
|++|++++|. ++... ...++.+++|+.|++ ++.++......+...+++|+.|++++|. ++.
T Consensus 122 L~~L~L~~N~-l~~~~----------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~ 183 (487)
T 3oja_A 122 KKNIYLANNK-ITMLR----------------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (487)
T ss_dssp CEEEECCSSC-CCSGG----------------GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred CCEEECCCCC-CCCCC----------------chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccc
Confidence 7777776653 22111 113344566666666 3344444444444456677777777662 222
Q ss_pred HHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc
Q 003957 541 DALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC 586 (784)
Q Consensus 541 ~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c 586 (784)
. .... .+++|+.|+++.|.+++. +..+..+++|+.|++++|
T Consensus 184 ~--~~~~-~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 184 V--KGQV-VFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp E--ECCC-CCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTS
T ss_pred c--cccc-cCCCCCEEECCCCCCCCC--CHhHcCCCCccEEEecCC
Confidence 1 1111 256666666666666542 112445566666666666
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.35 E-value=7.7e-13 Score=138.05 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=30.9
Q ss_pred CCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCC
Q 003957 599 LPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECG 664 (784)
Q Consensus 599 ~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~ 664 (784)
+++|++|+++++ .++.... ..+..+++|+.|++++|..... .......+++|+.|++++|+
T Consensus 176 l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 176 LHSLDRLLLHQN--RVAHVHP-HAFRDLGRLMTLYLFANNLSAL--PTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSS--CCCEECT-TTTTTCTTCCEEECCSSCCSCC--CHHHHTTCTTCCEEECCSSC
T ss_pred ccccCEEECCCC--cccccCH-hHccCcccccEeeCCCCcCCcC--CHHHcccCcccCEEeccCCC
Confidence 355555555552 3433211 1223456666666666655441 12223456667777776665
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.30 E-value=2.3e-12 Score=136.16 Aligned_cols=160 Identities=17% Similarity=0.155 Sum_probs=96.8
Q ss_pred CCCccEEEecCCCCCCHHHHHHHH--HhCccccEEEecCCcCchhhhhhc--c-cCCcCEEEecCCccchhhH---HHHH
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELM--CQARKLKSLCLSGTQLADKALYNF--S-GSSLEMLDVSDTMISGAAL---AYMV 456 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~--~~~~~L~~L~Ls~~~l~~~~~~~l--~-~~~L~~L~Ls~~~i~~~~l---~~~~ 456 (784)
...++.+.+.++.. ++..+..+. ...++|+.|++++|.+++.....+ . .++|++|++++|.++.... ....
T Consensus 63 ~~~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34678899988754 455544432 345779999999999887776665 3 6899999999998775211 1122
Q ss_pred hcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCC
Q 003957 457 HGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGG 536 (784)
Q Consensus 457 ~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 536 (784)
..+++|++|++++|.. ..... ..+..+++|++|+++++.
T Consensus 142 ~~~~~L~~L~Ls~n~l-~~~~~----------------------------------------~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHS-PAFSC----------------------------------------EQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp TBCSCCCEEEEECCSS-CCCCT----------------------------------------TSCCCCTTCCEEECCSCT
T ss_pred hhccCCCEEEeeCCCc-chhhH----------------------------------------HHhccCCCCCEEECCCCC
Confidence 3678888888877632 22110 012334556666666663
Q ss_pred CCChHHHHHh--hccCCCCcEEEeeeeccChH--HHHHHHhhCCCCcEEEeccc
Q 003957 537 SLGEDALRLL--PTTCPMLELVVLYFQVMSDS--IIINILESLRRLQVLAICHC 586 (784)
Q Consensus 537 ~l~~~~l~~l--~~~~~~L~~L~L~~~~i~~~--~l~~~~~~l~~L~~L~Ls~c 586 (784)
-.....+... ...+++|++|+++.|.++.. ....++.++++|++|++++|
T Consensus 181 l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 181 GLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred CccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 3322222111 12356777777776666532 12223566677777777777
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=1.4e-11 Score=129.99 Aligned_cols=57 Identities=9% Similarity=0.173 Sum_probs=33.8
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccC
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVD 245 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~ 245 (784)
.+++|++|++++|.-...+. ...+++|++|++++ +.+++... ...+++|++|+++.+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~-----~~~l~~L~~L~L~~-n~i~~~~~---~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKD-NQITDLAP---LKNLTKITELELSGN 95 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTT-----GGGCTTCCEEECCS-SCCCCCGG---GTTCCSCCEEECCSC
T ss_pred HcCCcCEEEeeCCCccCchh-----hhccCCCCEEEccC-CcCCCChh---HccCCCCCEEEccCC
Confidence 56777777777764333321 24567777777777 34443222 336777777777754
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=3.9e-13 Score=139.62 Aligned_cols=182 Identities=20% Similarity=0.134 Sum_probs=109.4
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+++|++|+++.+.++... ...+.++++|++|++++|. ..... .....+++|++|+++++ .++..... .+..+++
T Consensus 51 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n--~l~~~~~~-~~~~l~~ 125 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVET--NLASLENF-PIGHLKT 125 (276)
T ss_dssp CTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTS--CCCCSTTC-CCTTCTT
T ss_pred ccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEEECCCC--CccccCch-hcccCCC
Confidence 455666666555554321 1234566777777777772 22222 22234577777777774 34332111 1346778
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHh---hCCCCCC-EEEcccCCCCCChhHHHHHHhcC
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSL---FNCIALE-DLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l---~~~~~L~-~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
|++|++++|...... ......++++|+.|++++|. ++......+ ..++.|. .|++++|.+ ..++......
T Consensus 126 L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l----~~~~~~~~~~ 199 (276)
T 2z62_A 126 LKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM----NFIQPGAFKE 199 (276)
T ss_dssp CCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCC----CEECTTSSCS
T ss_pred CCEEECcCCccceec-CchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCcc----cccCccccCC
Confidence 888888888764411 11123457888888888876 544332333 3444454 899999876 3333333345
Q ss_pred CCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcCc
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~~ 746 (784)
.+|+.|++++|... .+|. +..+++|++|++++|+....
T Consensus 200 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 200 IRLKELALDTNQLK----SVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEEEEECCSSCCS----CCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CcccEEECCCCcee----ecCHhHhcccccccEEEccCCccccc
Confidence 58999999988755 3454 68889999999998875533
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.25 E-value=1.3e-12 Score=135.18 Aligned_cols=178 Identities=16% Similarity=0.089 Sum_probs=108.2
Q ss_pred CCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcE
Q 003957 552 MLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVE 631 (784)
Q Consensus 552 ~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~ 631 (784)
++++|+++.+.++... ...+.++++|++|++++|........+...+++|++|+++++ .++.... ..+..+++|++
T Consensus 38 ~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~ 113 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN--KLQALPI-GVFDQLVNLAE 113 (270)
T ss_dssp TCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS--CCCCCCT-TTTTTCSSCCE
T ss_pred CCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC--cCCcCCH-hHcccccCCCE
Confidence 4566666555554321 112445666777777666221222223344577777777773 4443221 22345677888
Q ss_pred EEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceec
Q 003957 632 LSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVS 711 (784)
Q Consensus 632 L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~ 711 (784)
|++++|...... .....++++|+.|+|++|. ++......+..+++|+.|++++|.+ . ...+..+..+++|+.|+
T Consensus 114 L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 114 LRLDRNQLKSLP--PRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQL--K-RVPEGAFDKLTELKTLK 187 (270)
T ss_dssp EECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--S-CCCTTTTTTCTTCCEEE
T ss_pred EECCCCccCeeC--HHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcC--c-EeChhHhccCCCcCEEE
Confidence 888877654411 1122457888888888876 5544444456788888888888865 3 33334467788888888
Q ss_pred cccccccCCCCCccc--ccCCCCCCEEEecCCCC
Q 003957 712 LDLCDASDGNFEIPD--YADRYSLSTVKITKCKS 743 (784)
Q Consensus 712 L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~ 743 (784)
+++|... .+|. +..+++|+.|++++|+-
T Consensus 188 L~~N~l~----~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 188 LDNNQLK----RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSSCCS----CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCcCC----cCCHHHhccccCCCEEEecCCCe
Confidence 8887655 3344 77788888888888774
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.24 E-value=9.7e-13 Score=137.54 Aligned_cols=175 Identities=20% Similarity=0.142 Sum_probs=109.2
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++++.|+++.|.++... ...+.++++|+.|++++| +..... ...+++|++|++++ +.++. +...+..+++|
T Consensus 31 ~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~--N~l~~--l~~~~~~l~~L 102 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSH--NQLQS--LPLLGQTLPAL 102 (290)
T ss_dssp TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCS--SCCSS--CCCCTTTCTTC
T ss_pred CCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCC--CcCCc--CchhhccCCCC
Confidence 34566666555554321 123455667777777766 221111 13457777777777 34542 22233467788
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCce
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRL 709 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~ 709 (784)
++|++++|.+..- ......++++|+.|+|++|. ++......+..+++|+.|++++|.+ . ......+..+++|+.
T Consensus 103 ~~L~l~~N~l~~l--~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-~l~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 103 TVLDVSFNRLTSL--PLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNL--T-ELPAGLLNGLENLDT 176 (290)
T ss_dssp CEEECCSSCCCCC--CSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC--S-CCCTTTTTTCTTCCE
T ss_pred CEEECCCCcCccc--CHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcC--C-ccCHHHhcCcCCCCE
Confidence 8888888776541 11123457888888888876 5544344455788888888888865 3 333344677888888
Q ss_pred eccccccccCCCCCccc-ccCCCCCCEEEecCCCC
Q 003957 710 VSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 710 L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
|++++|... .+|. +....+|+.|++++|+-
T Consensus 177 L~L~~N~l~----~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 177 LLLQENSLY----TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECCSSCCC----CCCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCcCC----ccChhhcccccCCeEEeCCCCc
Confidence 888887766 5676 66777888888888764
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.22 E-value=7.1e-12 Score=129.99 Aligned_cols=112 Identities=15% Similarity=0.062 Sum_probs=74.2
Q ss_pred HhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCC--HHHHHHHHHhCcccc-E
Q 003957 340 RRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVD--GMYLLELMCQARKLK-S 416 (784)
Q Consensus 340 ~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~--~~~l~~l~~~~~~L~-~ 416 (784)
.++++|++|++++|.++.. .+|..+..+++|++|++++|.... ...+..+ ..++.|. .
T Consensus 121 ~~l~~L~~L~l~~n~l~~~------------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~ 181 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQSF------------------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLS 181 (276)
T ss_dssp TTCTTCCEEECCSSCCCCC------------------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEE
T ss_pred ccCCCCCEEECcCCcccee------------------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhcccccee
Confidence 3567777777777766541 134445777888888888875421 1223222 3444444 8
Q ss_pred EEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCC
Q 003957 417 LCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCK 471 (784)
Q Consensus 417 L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~ 471 (784)
|++++|.++......+...+|++|++++|.++.... ..+..+++|++|+++++.
T Consensus 182 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSC
T ss_pred eecCCCcccccCccccCCCcccEEECCCCceeecCH-hHhcccccccEEEccCCc
Confidence 899998888776666666789999999998765433 233678899999998753
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.20 E-value=7.6e-12 Score=129.51 Aligned_cols=179 Identities=16% Similarity=0.069 Sum_probs=79.5
Q ss_pred hcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCc
Q 003957 523 AIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNL 602 (784)
Q Consensus 523 ~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L 602 (784)
.+.+|+.|+++++. +.. +..+.. +++|+.|+++.+.+++. ..+..+++|++|++++|............+++|
T Consensus 39 ~l~~L~~L~l~~~~-i~~--~~~l~~-l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKS--VQGIQY-LPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEECTTSC-CCC--CTTGGG-CTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccceeeeeeCCCC-ccc--cccccc-CCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 45567777776652 221 112222 56666666665555542 134455666666666652111111122234555
Q ss_pred cEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCE
Q 003957 603 RKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALED 682 (784)
Q Consensus 603 ~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~ 682 (784)
++|+++++ .++.... ..+..+++|++|++++|....- ......++++|+.|++++|. ++......+.++++|+.
T Consensus 112 ~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 112 KELVLVEN--QLQSLPD-GVFDKLTNLTYLNLAHNQLQSL--PKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp CEEECTTS--CCCCCCT-TTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CEEECCCC--cCCccCH-HHhccCCCCCEEECCCCccCcc--CHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCE
Confidence 55555553 3332111 1123445555555555543321 11111234555555555543 33222222334555555
Q ss_pred EEcccCCCCCChhHHHHHHhcCCCCceeccccccc
Q 003957 683 LLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDA 717 (784)
Q Consensus 683 L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~ 717 (784)
|++++|.+ . ...+..+..+++|+.|++++|+.
T Consensus 186 L~L~~N~l--~-~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 186 LRLYQNQL--K-SVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCC--S-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcC--C-ccCHHHHhCCcCCCEEEccCCCc
Confidence 55555543 2 22223344455555555555443
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=1.3e-12 Score=135.35 Aligned_cols=198 Identities=15% Similarity=0.079 Sum_probs=100.2
Q ss_pred hhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhC
Q 003957 497 LGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESL 575 (784)
Q Consensus 497 l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l 575 (784)
+..+++|+.|++. +.+.... .+..+++|+.|+++++. +.+ +..+.. +++|++|+++.+.+++. ....+.++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~-l~~--~~~l~~-l~~L~~L~L~~n~l~~~-~~~~~~~l 108 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNK-LHD--ISALKE-LTNLTYLILTGNQLQSL-PNGVFDKL 108 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSC-CCC--CGGGTT-CTTCCEEECTTSCCCCC-CTTTTTTC
T ss_pred cccccceeeeeeCCCCccccc---ccccCCCCcEEECCCCC-CCC--chhhcC-CCCCCEEECCCCccCcc-ChhHhcCC
Confidence 3445566666663 2332221 24456666666666652 222 122332 56666666665555542 12224556
Q ss_pred CCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCC
Q 003957 576 RRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGL 655 (784)
Q Consensus 576 ~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L 655 (784)
++|++|++++|............+++|++|++++| .++.... ..+..+++|++|++++|..... ......++++|
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L 183 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN--QLQSLPK-GVFDKLTNLTELDLSYNQLQSL--PEGVFDKLTQL 183 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC--ccCccCH-HHhccCccCCEEECCCCCcCcc--CHHHhcCCccC
Confidence 66666666666221222222234466666666663 3442111 1233556666666666654431 11122346666
Q ss_pred cEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 656 ISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 656 ~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+.|++++|. ++......+..+++|+.|++++|.+ . ..+++|+.|.++.|...
T Consensus 184 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~--~--------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 184 KDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW--D--------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB--C--------CCTTTTHHHHHHHHHTG
T ss_pred CEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCc--c--------ccCcHHHHHHHHHHhCC
Confidence 666666665 4433333345566666666666654 1 23566666666655444
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=1.8e-11 Score=127.88 Aligned_cols=170 Identities=19% Similarity=0.142 Sum_probs=89.4
Q ss_pred hhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCC
Q 003957 522 PAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLP 600 (784)
Q Consensus 522 ~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~ 600 (784)
..+++|+.|+++++. +... ..+. .+++|+.|+++.+.+++... +..+++|+.|++++| +.+. .. ...++
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~--~~~~-~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~--~~-l~~l~ 112 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSV--QGIQ-YLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDL--SS-LKDLK 112 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCC--TTGG-GCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCG--GG-GTTCT
T ss_pred hhcCcccEEEccCCC-cccC--hhHh-cCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCC--hh-hccCC
Confidence 345677777777762 2211 1232 26667777776666665321 556667777777666 2221 11 23446
Q ss_pred CccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCC
Q 003957 601 NLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIAL 680 (784)
Q Consensus 601 ~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L 680 (784)
+|++|+++++ .+++. ..+..+++|+.|++++|....- .....+++|+.|++++|. ++.... +..+++|
T Consensus 113 ~L~~L~L~~n--~i~~~---~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L 180 (291)
T 1h6t_A 113 KLKSLSLEHN--GISDI---NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKL 180 (291)
T ss_dssp TCCEEECTTS--CCCCC---GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTC
T ss_pred CCCEEECCCC--cCCCC---hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCc-cccchh--hcCCCcc
Confidence 6666666663 34432 1233456666666666655442 122345666666666654 333222 4456666
Q ss_pred CEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 681 EDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 681 ~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+.|++++|.+ + .++ .+..+++|+.|++++|+..
T Consensus 181 ~~L~L~~N~i--~--~l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 181 QNLYLSKNHI--S--DLR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CEEECCSSCC--C--BCG-GGTTCTTCSEEEEEEEEEE
T ss_pred CEEECCCCcC--C--CCh-hhccCCCCCEEECcCCccc
Confidence 6666666644 2 222 2555666666666665544
No 90
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=2e-10 Score=123.99 Aligned_cols=163 Identities=16% Similarity=0.102 Sum_probs=104.9
Q ss_pred cCcccEEEecCCCCCChHHHHHhhc----cCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhh--
Q 003957 524 IKLLHSITVGLGGSLGEDALRLLPT----TCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFK-- 596 (784)
Q Consensus 524 l~~L~~L~L~~~~~l~~~~l~~l~~----~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~-- 596 (784)
.++|+.|++++| .+++.....+.. .+++|++|+++.|.+++.++..+...+++|++|++++| +++.....+.
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 346777777776 455555444433 23578888887777888777777777778888888887 4554444432
Q ss_pred --cCCCCccEEEccCCCCCCChHHHHHH---HhcCCCCcEEEecCCCCCChHHH--HHHHhcCCCCcEEeecCCCCCCHH
Q 003957 597 --LPLPNLRKLKLERVTPWMTNNDLVIL---TQNCSELVELSLVGCTLLSSDSQ--LIISQGWPGLISLHLEECGDITAY 669 (784)
Q Consensus 597 --~~~~~L~~L~L~~c~~~l~~~~l~~l---~~~~~~L~~L~Ls~c~~~~~~~~--~~~~~~~~~L~~L~L~~c~~i~~~ 669 (784)
...++|++|++++| .+++.+...+ ...+++|++|+|++|.+.+.+.. ......+++|+.|+|++|. +++.
T Consensus 150 L~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~ 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNN--PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDT 226 (372)
T ss_dssp HHSTTCCCCEEECCSS--CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHH
T ss_pred HHhcCCccceeeCCCC--CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHH
Confidence 34567888888884 5776655443 24567788888888775433221 1122346678888887775 7776
Q ss_pred HHHHh----hCCCCCCEEEcccCCC
Q 003957 670 GVTSL----FNCIALEDLLLRHNGP 690 (784)
Q Consensus 670 ~~~~l----~~~~~L~~L~L~~n~~ 690 (784)
+...+ ..+++|++|+|++|.+
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCC
Confidence 65544 2467788888888754
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.15 E-value=4.1e-11 Score=117.49 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=66.1
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCC-CCCChhHHHHHHhc
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNG-PGIPRDFILDAASK 703 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~-~gl~~~~~~~~l~~ 703 (784)
.+++|++|++++|....... . ...++++|+.|++++|. ++...+..+..+++|+.|++++|. + + .++ .+..
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~-~-~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i--~--~~~-~l~~ 157 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKI-P-NLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAI--T--DIM-PLKT 157 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGS-C-CCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBC--C--CCG-GGGG
T ss_pred cCCCCCEEEeECCccCcccC-h-hhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCc--c--ccH-hhcC
Confidence 45666666666665443111 1 11346777777777765 665556666677777777777775 4 2 222 4667
Q ss_pred CCCCceeccccccccCCCCCcccccCCCCCCEEEecCCCCc
Q 003957 704 MPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSK 744 (784)
Q Consensus 704 l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~~ 744 (784)
+++|+.|++++|... .++.+..+++|++|++++++..
T Consensus 158 l~~L~~L~l~~n~i~----~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 158 LPELKSLNIQFDGVH----DYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEECTTBCCC----CCTTGGGCSSCCEEEECBC---
T ss_pred CCCCCEEECCCCCCc----ChHHhccCCCCCEEEeeCcccC
Confidence 777777777777655 3345667777888888777643
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.15 E-value=1.9e-11 Score=123.89 Aligned_cols=150 Identities=9% Similarity=0.024 Sum_probs=94.6
Q ss_pred CCCEEEeeCCCCCHHHHHHhhccCCccCcccccccc-hhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecC-
Q 003957 344 KLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKR-NFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSG- 421 (784)
Q Consensus 344 ~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~- 421 (784)
+|+.|++++|.++. ++ ..+..+++|+.|++++|..++..... .+..+++|+.|++++
T Consensus 32 ~l~~L~l~~n~l~~--------------------i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 32 STQTLKLIETHLRT--------------------IPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNT 90 (239)
T ss_dssp TCCEEEEESCCCSE--------------------ECTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEE
T ss_pred cccEEEEeCCcceE--------------------ECHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCC
Confidence 68888888887765 22 24467889999999988633321111 126788999999998
Q ss_pred CcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCcc---EEeccCCCccccccccccccccCCCCchhhHHhh
Q 003957 422 TQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLK---YLNARGCKNLFQQESNGRGIEFSSYPCADLFAEL 497 (784)
Q Consensus 422 ~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~---~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l 497 (784)
|.++......|. .++|++|++++|.++... . +..+++|+ +|+++++..++..... .+
T Consensus 91 n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp--~-~~~l~~L~~L~~L~l~~N~~l~~i~~~----------------~~ 151 (239)
T 2xwt_C 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFP--D-LTKVYSTDIFFILEITDNPYMTSIPVN----------------AF 151 (239)
T ss_dssp TTCCEECTTSEECCTTCCEEEEEEECCCSCC--C-CTTCCBCCSEEEEEEESCTTCCEECTT----------------TT
T ss_pred CCeeEcCHHHhCCCCCCCEEeCCCCCCcccc--c-cccccccccccEEECCCCcchhhcCcc----------------cc
Confidence 888776666665 578999999988776522 1 35667777 8888776444432211 34
Q ss_pred hcCCCcc-EEEe-ccccCcccHhhhhhhcCcccEEEecCC
Q 003957 498 GRTRKLE-EIVL-GWGFSFLSLEVLKPAIKLLHSITVGLG 535 (784)
Q Consensus 498 ~~l~~L~-~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~ 535 (784)
..+++|+ +|++ ++.+..++...+ .. ++|+.|+++++
T Consensus 152 ~~l~~L~~~L~l~~n~l~~i~~~~~-~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNGFTSVQGYAF-NG-TKLDAVYLNKN 189 (239)
T ss_dssp TTTBSSEEEEECCSCCCCEECTTTT-TT-CEEEEEECTTC
T ss_pred cchhcceeEEEcCCCCCcccCHhhc-CC-CCCCEEEcCCC
Confidence 4566677 7777 344443333221 11 45566666555
No 93
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=3.8e-10 Score=121.91 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=27.3
Q ss_pred ccccEEEecCCcCchhhhhhcc------cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 412 RKLKSLCLSGTQLADKALYNFS------GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 412 ~~L~~L~Ls~~~l~~~~~~~l~------~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
+.|+.|++++|.+++.....+. .++|++|+|++|.+++.+...+...+++|++|++++|
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 3444555554444443333222 1345555555555555444444444444555555444
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.13 E-value=4.9e-10 Score=109.74 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=86.7
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEec
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLS 420 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls 420 (784)
.+++|+.|+++++.+.. +| .+..+++|++|++++|.. ++. .. ...+++|+.|+++
T Consensus 42 ~l~~L~~L~l~~n~i~~--------------------l~-~l~~l~~L~~L~l~~n~~-~~~--~~-l~~l~~L~~L~l~ 96 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD--------------------LT-GIEYAHNIKDLTINNIHA-TNY--NP-ISGLSNLERLRIM 96 (197)
T ss_dssp HHHTCCEEEEESSCCSC--------------------CT-TGGGCTTCSEEEEESCCC-SCC--GG-GTTCTTCCEEEEE
T ss_pred hcCCccEEeccCCCccC--------------------hH-HHhcCCCCCEEEccCCCC-Ccc--hh-hhcCCCCCEEEeE
Confidence 45789999999998875 33 237789999999999944 322 22 3689999999999
Q ss_pred CCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCcccc
Q 003957 421 GTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQ 475 (784)
Q Consensus 421 ~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~ 475 (784)
+|.+++..+..+. .++|++|++++|.+++..+..+ ..+++|++|++++|..+++
T Consensus 97 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~ 151 (197)
T 4ezg_A 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITD 151 (197)
T ss_dssp CTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCC
T ss_pred CCccCcccChhhcCCCCCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccc
Confidence 9999887777666 6899999999999987666554 6899999999999864554
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.10 E-value=7.1e-12 Score=130.96 Aligned_cols=202 Identities=19% Similarity=0.076 Sum_probs=130.9
Q ss_pred hhcCCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhC
Q 003957 497 LGRTRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESL 575 (784)
Q Consensus 497 l~~l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l 575 (784)
+.++++++++++ +.++..++.. + .++++.|+++++. ++......+.. +++|+.|+++.+.++.... ...+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~--~--~~~l~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~---~~~l 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD--L--PKDTTILHLSENL-LYTFSLATLMP-YTRLTQLNLDRAELTKLQV---DGTL 76 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC--C--CTTCCEEECTTSC-CSEEEGGGGTT-CTTCCEEECTTSCCCEEEC---CSCC
T ss_pred ccccCCccEEECCCCCCCcCCCC--C--CCCCCEEEcCCCc-CCccCHHHhhc-CCCCCEEECCCCccCcccC---CCCC
Confidence 455677888888 4444443322 1 2468888888773 33222223333 6788888888777765322 1567
Q ss_pred CCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCC
Q 003957 576 RRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGL 655 (784)
Q Consensus 576 ~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L 655 (784)
++|+.|++++|.... +......+++|++|++++ +.++.... ..+.++++|++|++++|.+..- .......+++|
T Consensus 77 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~--N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L 150 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSF--NRLTSLPL-GALRGLGELQELYLKGNELKTL--PPGLLTPTPKL 150 (290)
T ss_dssp TTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCS--SCCCCCCS-STTTTCTTCCEEECTTSCCCCC--CTTTTTTCTTC
T ss_pred CcCCEEECCCCcCCc-CchhhccCCCCCEEECCC--CcCcccCH-HHHcCCCCCCEEECCCCCCCcc--ChhhcccccCC
Confidence 888888888883211 112234568889999988 45653221 2245678899999998876541 12223457889
Q ss_pred cEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 656 ISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 656 ~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+.|+|++|. ++......+.++++|+.|++++|.+ ..++..+..+++|+.|.+++|+..
T Consensus 151 ~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l----~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 151 EKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL----YTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcC----CccChhhcccccCCeEEeCCCCcc
Confidence 999998876 5543334455788999999999877 556666777788999999887765
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.10 E-value=1.9e-11 Score=123.77 Aligned_cols=85 Identities=14% Similarity=-0.010 Sum_probs=43.9
Q ss_pred HhhCCCCc-EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcC-CCCcEEEecCCCCCChHHHHHHH
Q 003957 572 LESLRRLQ-VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNC-SELVELSLVGCTLLSSDSQLIIS 649 (784)
Q Consensus 572 ~~~l~~L~-~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~-~~L~~L~Ls~c~~~~~~~~~~~~ 649 (784)
+.++++|+ +|++++|............ ++|++|+++++ ..++.... ..+.++ ++|++|++++|....-. .
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n-~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l~-----~ 222 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN-KYLTVIDK-DAFGGVYSGPSLLDVSQTSVTALP-----S 222 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC-TTCCEECT-TTTTTCSBCCSEEECTTCCCCCCC-----C
T ss_pred ccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC-CCcccCCH-HHhhccccCCcEEECCCCccccCC-----h
Confidence 34555666 6666655211111111222 56777777763 12442211 123345 67888888887665411 1
Q ss_pred hcCCCCcEEeecCCC
Q 003957 650 QGWPGLISLHLEECG 664 (784)
Q Consensus 650 ~~~~~L~~L~L~~c~ 664 (784)
..+++|+.|++.++.
T Consensus 223 ~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 223 KGLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCSEEECTTC-
T ss_pred hHhccCceeeccCcc
Confidence 147778888877764
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.09 E-value=6e-11 Score=136.31 Aligned_cols=170 Identities=19% Similarity=0.157 Sum_probs=113.0
Q ss_pred hhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCC
Q 003957 522 PAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLP 600 (784)
Q Consensus 522 ~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~ 600 (784)
..+.+|+.|+++++. +.. +..+. .+++|+.|+|+.+.+++... +..+++|+.|+|++| +.+. .. ...++
T Consensus 40 ~~L~~L~~L~l~~n~-i~~--l~~l~-~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~ 109 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKS--VQGIQ-YLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDL--SS-LKDLK 109 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCC--CTTGG-GCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCC--TT-STTCT
T ss_pred hcCCCCCEEECcCCC-CCC--ChHHc-cCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCC--hh-hccCC
Confidence 456788888888773 222 12333 37888888888777766422 677888888888888 3321 12 34557
Q ss_pred CccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCC
Q 003957 601 NLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIAL 680 (784)
Q Consensus 601 ~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L 680 (784)
+|+.|++++| .++.. . .+..+++|+.|+|++|.+... .....+++|+.|+|++|. ++...+ +..+++|
T Consensus 110 ~L~~L~Ls~N--~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L 177 (605)
T 1m9s_A 110 KLKSLSLEHN--GISDI--N-GLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKL 177 (605)
T ss_dssp TCCEEECTTS--CCCCC--G-GGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTC
T ss_pred CCCEEEecCC--CCCCC--c-cccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCc-CCCchh--hccCCCC
Confidence 8888888884 45542 1 244677888888888876652 123467888888888876 443322 6678888
Q ss_pred CEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 681 EDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 681 ~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+.|+|++|.+ + .+ ..+..+++|+.|+|++|+..
T Consensus 178 ~~L~Ls~N~i--~--~l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 178 QNLYLSKNHI--S--DL-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CEEECCSSCC--C--BC-GGGTTCTTCSEEECCSEEEE
T ss_pred CEEECcCCCC--C--CC-hHHccCCCCCEEEccCCcCc
Confidence 8888888865 3 22 34677888888888887765
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.09 E-value=1.1e-10 Score=121.92 Aligned_cols=170 Identities=19% Similarity=0.120 Sum_probs=123.0
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+++|+.|+++.+.+++. . .+..+++|+.|++++| +.+... ...+++|++|+++++ .++... . +..+++
T Consensus 45 l~~L~~L~l~~~~i~~~--~-~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n--~l~~~~--~-l~~l~~ 113 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDEN--KVKDLS--S-LKDLKK 113 (291)
T ss_dssp HHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS--CCCCGG--G-GTTCTT
T ss_pred cCcccEEEccCCCcccC--h-hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCC--cCCCCh--h-hccCCC
Confidence 45689999977777653 2 2667889999999988 333222 446689999999984 566532 2 567889
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
|++|++++|.+..- . ....+++|+.|++++|. ++.. ..+..+++|+.|++++|.+ . .+.. +..+++|+
T Consensus 114 L~~L~L~~n~i~~~---~-~l~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N~l--~--~~~~-l~~l~~L~ 181 (291)
T 1h6t_A 114 LKSLSLEHNGISDI---N-GLVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQI--S--DIVP-LAGLTKLQ 181 (291)
T ss_dssp CCEEECTTSCCCCC---G-GGGGCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCC--C--CCGG-GTTCTTCC
T ss_pred CCEEECCCCcCCCC---h-hhcCCCCCCEEEccCCc-CCcc--hhhccCCCCCEEEccCCcc--c--cchh-hcCCCccC
Confidence 99999999877652 1 23468889999999886 5433 4566889999999999876 3 2222 78889999
Q ss_pred eeccccccccCCCCCcccccCCCCCCEEEecCCCCcCc
Q 003957 709 LVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 709 ~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~~~~ 746 (784)
.|++++|... .++.+..+++|+.|++++|+....
T Consensus 182 ~L~L~~N~i~----~l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 182 NLYLSKNHIS----DLRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp EEECCSSCCC----BCGGGTTCTTCSEEEEEEEEEECC
T ss_pred EEECCCCcCC----CChhhccCCCCCEEECcCCcccCC
Confidence 9999988665 456678888999999998875443
No 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.07 E-value=4.8e-11 Score=123.29 Aligned_cols=177 Identities=15% Similarity=0.046 Sum_probs=124.5
Q ss_pred CCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcE
Q 003957 552 MLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVE 631 (784)
Q Consensus 552 ~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~ 631 (784)
..+.++++.+.++.. +. .-.+++++|++++|............+++|++|+++++ .++... ...+..+++|++
T Consensus 17 ~~~~l~~~~~~l~~i--p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~i~-~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI--PS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN--KLQTLP-AGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCSSC--CS--CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS--CCSCCC-TTTTSSCTTCCE
T ss_pred CCCEEEccCCCCCcc--CC--CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC--ccCeeC-hhhhcCCCCCCE
Confidence 355666655555431 11 01247999999999322222223345699999999994 565322 123457899999
Q ss_pred EEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceec
Q 003957 632 LSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVS 711 (784)
Q Consensus 632 L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~ 711 (784)
|++++|.+..- ......++++|+.|++++|. ++......+.++++|+.|++++|.+ . ......+..+++|+.|+
T Consensus 90 L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l--~-~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 90 LWVTDNKLQAL--PIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNEL--Q-SLPKGVFDKLTSLKELR 163 (270)
T ss_dssp EECCSSCCCCC--CTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCTTCCEEE
T ss_pred EECCCCcCCcC--CHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcC--C-ccCHhHccCCcccceeE
Confidence 99999987641 12233568999999999987 6555555567899999999999976 4 33344578899999999
Q ss_pred cccccccCCCCCccc--ccCCCCCCEEEecCCCCcC
Q 003957 712 LDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 712 L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~ 745 (784)
+++|... .++. +..+++|++|++++|+...
T Consensus 164 L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 164 LYNNQLK----RVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CCSSCCS----CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ecCCcCc----EeChhHhccCCCcCEEECCCCcCCc
Confidence 9998766 3444 8889999999999997543
No 100
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.05 E-value=3.5e-10 Score=106.61 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=90.4
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHh---CCCCCEEEeeCC-CCCHHHHHHhhcc
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRR---CVKLQSIIVCDT-SFGVYSIRALCSE 366 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~---~~~L~~L~Ls~~-~i~~~~l~~l~~~ 366 (784)
.+|++|++++|. ++|.++..+. .|++|++|+|++|..++|.++..+... |++|++|++++| .|++.++.++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--- 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--- 135 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG---
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH---
Confidence 579999999997 9999999885 699999999999999999999998863 678999999998 6999999876
Q ss_pred CCccCcccccccchhhhcCCCccEEEecCCCCCCHHHH--HHHHHhCccccE
Q 003957 367 VPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYL--LELMCQARKLKS 416 (784)
Q Consensus 367 l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l--~~l~~~~~~L~~ 416 (784)
..+++|++|++++|+.+++.++ ..+...+|+++.
T Consensus 136 ----------------~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 136 ----------------HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp ----------------GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred ----------------hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 6689999999999999998764 344567777653
No 101
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=4e-10 Score=119.97 Aligned_cols=289 Identities=15% Similarity=0.086 Sum_probs=158.8
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCc--hhhhhhcccCCcCEEEecCCccchhhHHHHHhc----
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLA--DKALYNFSGSSLEMLDVSDTMISGAALAYMVHG---- 458 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~--~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~---- 458 (784)
+.+|++|.+++. +....+..+...+++|+.|+|++|.+. ...... .+.+..+.+..+.+.... +.+
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~--~~~~~~~~~~~~~I~~~a----F~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT--YPNGKFYIYMANFVPAYA----FSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS--SGGGCCEEECTTEECTTT----TEEEETT
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc--ccccccccccccccCHHH----hcccccc
Confidence 457899999875 344556555344899999999998776 222111 122455666666554432 245
Q ss_pred ----CCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEec
Q 003957 459 ----NSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVG 533 (784)
Q Consensus 459 ----l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~ 533 (784)
|++|+.+.+.. .++..+-. .+..|++|+++++. +....+...++ ..+.++..+...
T Consensus 96 ~~~g~~~L~~l~L~~--~i~~I~~~----------------aF~~~~~L~~l~l~~n~i~~i~~~aF-~~~~~l~~l~~~ 156 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE--KIKNIEDA----------------AFKGCDNLKICQIRKKTAPNLLPEAL-ADSVTAIFIPLG 156 (329)
T ss_dssp EEEECTTCCC-CBCT--TCCEECTT----------------TTTTCTTCCEEEBCCSSCCEECTTSS-CTTTCEEEECTT
T ss_pred cccccCCCcEEECCc--cccchhHH----------------HhhcCcccceEEcCCCCccccchhhh-cCCCceEEecCc
Confidence 88888888865 34332211 34455666666663 33333333222 222223222222
Q ss_pred CCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc-EEEecccCC-hhHHHHhhcCCCCccEEEccCCC
Q 003957 534 LGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ-VLAICHCLG-DLSISSFKLPLPNLRKLKLERVT 611 (784)
Q Consensus 534 ~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~-~L~Ls~c~~-~~~~~~l~~~~~~L~~L~L~~c~ 611 (784)
.. ....... .+.+ ..+.+|.+|+ .+.+..... ............+++.+.+.+
T Consensus 157 ~~-----~~~~~~~--------------~i~~----~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~-- 211 (329)
T 3sb4_A 157 SS-----DAYRFKN--------------RWEH----FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG-- 211 (329)
T ss_dssp CT-----HHHHTST--------------TTTT----SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE--
T ss_pred ch-----hhhhccc--------------cccc----cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEee--
Confidence 11 0000000 0000 0122344444 334433211 111111112234666777766
Q ss_pred CCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCC-EEEcccCCC
Q 003957 612 PWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALE-DLLLRHNGP 690 (784)
Q Consensus 612 ~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~-~L~L~~n~~ 690 (784)
.+...+...+...|++|+.|++++|.... .......+|++|+.++|.++ ++..+...|.+|++|+ .+++.++ +
T Consensus 212 -~l~~~~~~~l~~~~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~-l 285 (329)
T 3sb4_A 212 -KLDNADFKLIRDYMPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPAS-V 285 (329)
T ss_dssp -CCCHHHHHHHHHHCTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTT-C
T ss_pred -eecHHHHHHHHHhcCCCeEEECCCCCcce--ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEccc-c
Confidence 25566666666668888888888765443 22233456888888888774 6666666677888888 8888773 2
Q ss_pred CCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEe
Q 003957 691 GIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKI 738 (784)
Q Consensus 691 gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~i 738 (784)
. .....++.+|++|+.+.+.++... .++. |.+|++|+.++.
T Consensus 286 --~-~I~~~aF~~c~~L~~l~l~~n~i~----~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 286 --T-AIEFGAFMGCDNLRYVLATGDKIT----TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp --C-EECTTTTTTCTTEEEEEECSSCCC----EECTTTTCTTCCCCEEEC
T ss_pred --e-EEchhhhhCCccCCEEEeCCCccC----ccchhhhcCCcchhhhcc
Confidence 3 444566888888888888765544 3444 888888888763
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.01 E-value=1.1e-10 Score=119.21 Aligned_cols=111 Identities=20% Similarity=0.154 Sum_probs=66.9
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
.+++|++|++++|.+..- ......++++|+.|+|++|. ++......+.++++|+.|++++|.+ . ...+..+..+
T Consensus 81 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~~~~~l 154 (251)
T 3m19_A 81 DLTELGTLGLANNQLASL--PLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL--Q-SIPAGAFDKL 154 (251)
T ss_dssp TCTTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTC
T ss_pred cCCcCCEEECCCCccccc--ChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcC--C-ccCHHHcCcC
Confidence 455666666666654431 11122346677777777664 4433333345677778888877755 3 3333356677
Q ss_pred CCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcC
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~ 745 (784)
++|+.|+|++|... .++. +..+++|+.|++++|+...
T Consensus 155 ~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 155 TNLQTLSLSTNQLQ----SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCEEECCCCcCC----ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 77888888777655 2333 6777788888888877533
No 103
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.01 E-value=7.4e-10 Score=104.41 Aligned_cols=86 Identities=14% Similarity=0.265 Sum_probs=55.3
Q ss_pred CccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhc---CCCCcEEeecCCCCCCHHHHHHhhCC
Q 003957 601 NLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQG---WPGLISLHLEECGDITAYGVTSLFNC 677 (784)
Q Consensus 601 ~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~---~~~L~~L~L~~c~~i~~~~~~~l~~~ 677 (784)
+|+.|++++| . +++.++..+ .+|++|++|+|++|..++|..+..+... +++|+.|+|++|..||+.|+..+..+
T Consensus 62 ~L~~LDLs~~-~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDS-C-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESC-C-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCC-C-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 5666666665 2 666666554 3566666666666666666666666542 45667777777766777666666666
Q ss_pred CCCCEEEcccCC
Q 003957 678 IALEDLLLRHNG 689 (784)
Q Consensus 678 ~~L~~L~L~~n~ 689 (784)
++|+.|++++|.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 677777776664
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.98 E-value=2.9e-10 Score=130.62 Aligned_cols=169 Identities=18% Similarity=0.165 Sum_probs=98.4
Q ss_pred hhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhC
Q 003957 497 LGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESL 575 (784)
Q Consensus 497 l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l 575 (784)
+..++.|+.|+++ +.+...+ .+..+++|+.|+|++|. +.+.. .+. .+++|+.|+|+.|.+++. + .+..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~-l~~~~--~l~-~l~~L~~L~Ls~N~l~~l--~-~l~~l 108 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNK-LTDIK--PLT-NLKNLGWLFLDENKIKDL--S-SLKDL 108 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSC-CCCCG--GGG-GCTTCCEEECCSSCCCCC--T-TSTTC
T ss_pred hhcCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCC-CCCCh--hhc-cCCCCCEEECcCCCCCCC--h-hhccC
Confidence 3445667777773 3333332 24556777777777762 22211 133 367777777776666652 1 35566
Q ss_pred CCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 576 RRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 576 ~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
++|+.|+|++| +.+. .. ...+++|+.|+|++| .++.. ..+..+++|+.|+|++|.+..... ...+++
T Consensus 109 ~~L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N--~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~ 176 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--NG-LVHLPQLESLYLGNN--KITDI---TVLSRLTKLDTLSLEDNQISDIVP----LAGLTK 176 (605)
T ss_dssp TTCCEEECTTSCCCCC--GG-GGGCTTCSEEECCSS--CCCCC---GGGGSCTTCSEEECCSSCCCCCGG----GTTCTT
T ss_pred CCCCEEEecCCCCCCC--cc-ccCCCccCEEECCCC--ccCCc---hhhcccCCCCEEECcCCcCCCchh----hccCCC
Confidence 77777777777 2221 12 234577777777774 45543 234466777777777776554222 345777
Q ss_pred CcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCC
Q 003957 655 LISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGP 690 (784)
Q Consensus 655 L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~ 690 (784)
|+.|+|++|. ++.. ..+..+++|+.|+|++|.+
T Consensus 177 L~~L~Ls~N~-i~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 177 LQNLYLSKNH-ISDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCEEECCSSC-CCBC--GGGTTCTTCSEEECCSEEE
T ss_pred CCEEECcCCC-CCCC--hHHccCCCCCEEEccCCcC
Confidence 7777777765 4432 3455677777777777643
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.97 E-value=4.3e-11 Score=128.72 Aligned_cols=224 Identities=12% Similarity=-0.003 Sum_probs=148.0
Q ss_pred CCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEE-EeeeeccChHHHHHHHhhCCCC
Q 003957 501 RKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELV-VLYFQVMSDSIIINILESLRRL 578 (784)
Q Consensus 501 ~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L-~L~~~~i~~~~l~~~~~~l~~L 578 (784)
+.+++|++ ++.++.++.. .+..+++|++|+++++...+......+ ..++++.++ .+++|.++.. .+..+.++++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~f-~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCSEECTT-SSTTCTTCCEEEEECCTTCCEECTTSB-CSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred CCCCEEEccCCcCCCcCHH-HHcCCCCCCEEECcCCCCCCccChhHh-hcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence 46899999 5566655543 467789999999999843221111111 235667665 4477877653 13346788999
Q ss_pred cEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEE
Q 003957 579 QVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISL 658 (784)
Q Consensus 579 ~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L 658 (784)
+.|++++|..............++..|++.++ +.++......+......++.|++++|.+..- .. ......+|+.|
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i--~~-~~f~~~~L~~l 182 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQEI--HN-SAFNGTQLDEL 182 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSSCCCEE--CT-TSSTTEEEEEE
T ss_pred ccccccccccccCCchhhcccchhhhhhhccc-cccccccccchhhcchhhhhhccccccccCC--Ch-hhccccchhHH
Confidence 99999998321111111223357888888776 4555332222222234689999999986531 11 11235679999
Q ss_pred eecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEe
Q 003957 659 HLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKI 738 (784)
Q Consensus 659 ~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~i 738 (784)
.+.+++.++......+.++++|+.|++++|.+ ..++. ..+.+|+.|.+.++..++ .+|.+.++++|+.+++
T Consensus 183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l----~~lp~--~~~~~L~~L~~l~~~~l~---~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRI----HSLPS--YGLENLKKLRARSTYNLK---KLPTLEKLVALMEASL 253 (350)
T ss_dssp ECTTCTTCCCCCTTTTTTEECCSEEECTTSCC----CCCCS--SSCTTCCEEECTTCTTCC---CCCCTTTCCSCCEEEC
T ss_pred hhccCCcccCCCHHHhccCcccchhhcCCCCc----CccCh--hhhccchHhhhccCCCcC---cCCCchhCcChhhCcC
Confidence 99988878766656677899999999999976 33332 336677888877777764 4577888999999999
Q ss_pred cC
Q 003957 739 TK 740 (784)
Q Consensus 739 s~ 740 (784)
.+
T Consensus 254 ~~ 255 (350)
T 4ay9_X 254 TY 255 (350)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.92 E-value=1e-10 Score=119.37 Aligned_cols=157 Identities=17% Similarity=0.040 Sum_probs=79.0
Q ss_pred CCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcE
Q 003957 552 MLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVE 631 (784)
Q Consensus 552 ~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~ 631 (784)
.++.|+++.+.++... ...+.++++|++|++++|............+++|++|++++ +.++.... ..+..+++|++
T Consensus 36 ~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~-~~~~~l~~L~~ 111 (251)
T 3m19_A 36 DTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN--NQLASLPL-GVFDHLTQLDK 111 (251)
T ss_dssp TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT--SCCCCCCT-TTTTTCTTCCE
T ss_pred CCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC--CcccccCh-hHhcccCCCCE
Confidence 3444444444443321 11234455556666555521111111222345666666666 33442111 12234566677
Q ss_pred EEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceec
Q 003957 632 LSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVS 711 (784)
Q Consensus 632 L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~ 711 (784)
|++++|.+..- ......++++|+.|+|++|. ++......+.++++|+.|++++|.+ . ...+..+..+++|+.|+
T Consensus 112 L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 112 LYLGGNQLKSL--PSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQL--Q-SVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp EECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--S-CCCTTTTTTCTTCCEEE
T ss_pred EEcCCCcCCCc--ChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcC--C-ccCHHHHhCCCCCCEEE
Confidence 77766655431 11122346677777777664 4433333455667777777777754 3 33333466677777777
Q ss_pred ccccccc
Q 003957 712 LDLCDAS 718 (784)
Q Consensus 712 L~~c~~~ 718 (784)
+++|+..
T Consensus 186 l~~N~~~ 192 (251)
T 3m19_A 186 LFGNQFD 192 (251)
T ss_dssp CCSCCBC
T ss_pred eeCCcee
Confidence 7776654
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=2.3e-10 Score=121.88 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=44.7
Q ss_pred hcCCCCcEEEecCCCCCChHHHHHHHhcCCCCc-EEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHh
Q 003957 624 QNCSELVELSLVGCTLLSSDSQLIISQGWPGLI-SLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAAS 702 (784)
Q Consensus 624 ~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~-~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~ 702 (784)
.+|++|++|++.++ +.. +......+|++|+ .+.+.+ .++..+...|.+|++|+.|+++.|.+ . .....++.
T Consensus 247 ~~~~~L~~l~l~~n--i~~-I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i--~-~I~~~aF~ 318 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN--LKT-IGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKI--T-TLGDELFG 318 (329)
T ss_dssp TTCTTCCEEECCTT--CCE-ECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCC--C-EECTTTTC
T ss_pred hCCCCCCEEECCcc--cce-ehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCcc--C-ccchhhhc
Confidence 34556666666554 111 1122234566676 777765 35545555566777777777766644 3 33334566
Q ss_pred cCCCCceec
Q 003957 703 KMPMLRLVS 711 (784)
Q Consensus 703 ~l~~L~~L~ 711 (784)
++++|+.+.
T Consensus 319 ~~~~L~~ly 327 (329)
T 3sb4_A 319 NGVPSKLIY 327 (329)
T ss_dssp TTCCCCEEE
T ss_pred CCcchhhhc
Confidence 677776654
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.90 E-value=1.2e-09 Score=112.13 Aligned_cols=144 Identities=17% Similarity=0.071 Sum_probs=60.8
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+++|+.|+++.+.+++.. .+..+++|+.|++++| +.+... ...+++|++|+++++ .++... .+. . ++
T Consensus 40 l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N--~l~~l~--~~~-~-~~ 107 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRN--RLKNLN--GIP-S-AC 107 (263)
T ss_dssp HTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSS--CCSCCT--TCC-C-SS
T ss_pred cCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCC--ccCCcC--ccc-c-Cc
Confidence 345666666555554421 2444555555555555 221111 223355555555552 333211 011 1 34
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
|++|++++|.+..- . ...++++|+.|++++|. ++.. ..+..+++|+.|++++|.+ . .+ ..+..+++|+
T Consensus 108 L~~L~L~~N~l~~~---~-~l~~l~~L~~L~Ls~N~-i~~~--~~l~~l~~L~~L~L~~N~i--~--~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 108 LSRLFLDNNELRDT---D-SLIHLKNLEILSIRNNK-LKSI--VMLGFLSKLEVLDLHGNEI--T--NT-GGLTRLKKVN 175 (263)
T ss_dssp CCEEECCSSCCSBS---G-GGTTCTTCCEEECTTSC-CCBC--GGGGGCTTCCEEECTTSCC--C--BC-TTSTTCCCCC
T ss_pred ccEEEccCCccCCC---h-hhcCcccccEEECCCCc-CCCC--hHHccCCCCCEEECCCCcC--c--ch-HHhccCCCCC
Confidence 55555555443331 1 11234445555554443 3321 1233444555555555433 2 11 3344444445
Q ss_pred eeccccccc
Q 003957 709 LVSLDLCDA 717 (784)
Q Consensus 709 ~L~L~~c~~ 717 (784)
.|++++|+.
T Consensus 176 ~L~l~~N~~ 184 (263)
T 1xeu_A 176 WIDLTGQKC 184 (263)
T ss_dssp EEEEEEEEE
T ss_pred EEeCCCCcc
Confidence 555544443
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.87 E-value=8.5e-10 Score=102.61 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=47.7
Q ss_pred CCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 576 RRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 576 ~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
++|+.|++++|. .+..+......+++|++|++++| .++.. ..+..+++|+.|++++|.+... ......++++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~---~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV--GLTSI---ANLPKLNKLKKLELSDNRVSGG--LEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS--CCCCC---TTCCCCTTCCEEECCSSCCCSC--THHHHHHCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC--CCCCc---hhhhcCCCCCEEECCCCcccch--HHHHhhhCCC
Confidence 456666666652 21122222234455555555553 34332 2233445555555555554431 1112223555
Q ss_pred CcEEeecCCCCCCHH-HHHHhhCCCCCCEEEcccCC
Q 003957 655 LISLHLEECGDITAY-GVTSLFNCIALEDLLLRHNG 689 (784)
Q Consensus 655 L~~L~L~~c~~i~~~-~~~~l~~~~~L~~L~L~~n~ 689 (784)
|+.|++++|. ++.. .+..+..+++|+.|++++|.
T Consensus 90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence 5555555544 3332 22334455555555555554
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.85 E-value=4.2e-10 Score=111.16 Aligned_cols=169 Identities=16% Similarity=0.064 Sum_probs=102.0
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCc
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELV 630 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~ 630 (784)
++|++|+++.+.++.. ....+.++++|++|++++|.-..........+++|++|+++++ .++.... ..+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~-~~~~~l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN--QLQSLPN-GVFDKLTQLK 103 (208)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCC
T ss_pred CCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC--cCCccCH-hHhcCccCCC
Confidence 4566666665555532 1223456677777777776221222222334577778887773 4542211 2234677888
Q ss_pred EEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCcee
Q 003957 631 ELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLV 710 (784)
Q Consensus 631 ~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L 710 (784)
+|++++|.+... ......++++|+.|++++|. ++......+..+++|+.|++++|.+ ...+++|+.|
T Consensus 104 ~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~----------~~~~~~l~~L 170 (208)
T 2o6s_A 104 ELALNTNQLQSL--PDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW----------DCTCPGIRYL 170 (208)
T ss_dssp EEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB----------CCCTTTTHHH
T ss_pred EEEcCCCcCccc--CHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe----------ecCCCCHHHH
Confidence 888888876541 11123457888888888876 5543334456788899999998865 2357888888
Q ss_pred ccccccccCCCCCccc-ccCCCCCCEEEecCCCC
Q 003957 711 SLDLCDASDGNFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 711 ~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
.++.|... + .+|. +++++. ++..|..
T Consensus 171 ~~~~n~~~-g--~ip~~~~~l~~----~~~~C~~ 197 (208)
T 2o6s_A 171 SEWINKHS-G--VVRNSAGSVAP----DSAKCSG 197 (208)
T ss_dssp HHHHHHCT-T--TBBCTTSSBCT----TCSBBTT
T ss_pred HHHHHhCC-c--eeeccCccccC----Ccccccc
Confidence 88887665 3 3565 554444 5555654
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.83 E-value=1.2e-09 Score=103.93 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=51.1
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHH-HHHHhhCCCCCCEEEcccCCCCCChhHHH----H
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAY-GVTSLFNCIALEDLLLRHNGPGIPRDFIL----D 699 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~-~~~~l~~~~~L~~L~L~~n~~gl~~~~~~----~ 699 (784)
.+++|++|++++|.+... .......+++|+.|++++|. ++.. .+..+..+++|+.|++++|.+ ...+ .
T Consensus 69 ~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l----~~~~~~~~~ 141 (168)
T 2ell_A 69 KLPKLKKLELSENRIFGG--LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV----TNLNDYRES 141 (168)
T ss_dssp CCSSCCEEEEESCCCCSC--CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG----GTSTTHHHH
T ss_pred cCCCCCEEECcCCcCchH--HHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC----cchHHHHHH
Confidence 455666666666665442 12223346677777777765 4432 224555677777777777754 2222 3
Q ss_pred HHhcCCCCceecccccccc
Q 003957 700 AASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 700 ~l~~l~~L~~L~L~~c~~~ 718 (784)
.+..+++|+.|++++|...
T Consensus 142 ~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHTTCSSCCEETTEETTSC
T ss_pred HHHhCccCcEecCCCCChh
Confidence 5667777777777776654
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.83 E-value=2.9e-09 Score=98.91 Aligned_cols=131 Identities=18% Similarity=0.125 Sum_probs=79.0
Q ss_pred CCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCC
Q 003957 599 LPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCI 678 (784)
Q Consensus 599 ~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~ 678 (784)
.++|++|++++| .+++..+...+..+++|+.|++++|..... ....++++|+.|++++|. ++...+..+..++
T Consensus 16 ~~~l~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNS--RSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTC--BCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCT
T ss_pred CccCeEEEccCC--cCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCc-ccchHHHHhhhCC
Confidence 356777777774 455333333445677777777777765542 222456777777777766 4433333344577
Q ss_pred CCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcc-c-ccCCCCCCEEEec
Q 003957 679 ALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIP-D-YADRYSLSTVKIT 739 (784)
Q Consensus 679 ~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~-~-~~~~~~L~~L~is 739 (784)
+|+.|++++|.+ .+-..+..+..+++|+.|++++|+.. +....+ . +..+++|+.|+++
T Consensus 89 ~L~~L~ls~N~i--~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKI--KDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCC--CSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcC--CChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 777777777765 31123355777777777777777654 220111 2 6667777777765
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.83 E-value=6.4e-10 Score=105.79 Aligned_cols=137 Identities=20% Similarity=0.117 Sum_probs=96.1
Q ss_pred CCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCC
Q 003957 599 LPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCI 678 (784)
Q Consensus 599 ~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~ 678 (784)
.++|++|++++| .+++..+...+..+++|++|++++|.+... .....+++|+.|++++|. ++...+..+.+++
T Consensus 23 ~~~L~~L~l~~n--~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNC--KSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENR-IFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSC--BCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCT
T ss_pred cccCCEEECCCC--CCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCc-CchHHHHHHhhCC
Confidence 356777777774 455333333345678899999999886552 233468999999999987 5443333444699
Q ss_pred CCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCc-cc-ccCCCCCCEEEecCCCCcC
Q 003957 679 ALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEI-PD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 679 ~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l-~~-~~~~~~L~~L~is~C~~~~ 745 (784)
+|+.|++++|.+ .+-.....+..+++|+.|++++|+.. +.... .. +..+++|++|++++|....
T Consensus 96 ~L~~L~Ls~N~l--~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 96 NLTHLNLSGNKL--KDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp TCCEEECBSSSC--CSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCCEEeccCCcc--CcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999999976 31112266888999999999999776 22010 12 7889999999999998644
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.82 E-value=6.2e-10 Score=111.03 Aligned_cols=132 Identities=17% Similarity=0.136 Sum_probs=82.3
Q ss_pred CccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCC
Q 003957 601 NLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIAL 680 (784)
Q Consensus 601 ~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L 680 (784)
.+++|++++ +.++.......+..+++|+.|++++|.+..- ......++++|+.|+|++|. ++......+.++++|
T Consensus 33 ~~~~L~L~~--N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 33 YTAELRLNN--NEFTVLEATGIFKKLPQLRKINFSNNKITDI--EEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESL 107 (220)
T ss_dssp TCSEEECCS--SCCCEECCCCCGGGCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSC
T ss_pred CCCEEEcCC--CcCCccCchhhhccCCCCCEEECCCCcCCEE--CHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCC
Confidence 445555555 3444321112234566777777777765431 11122457778888887766 554444456678888
Q ss_pred CEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCc-cc-ccCCCCCCEEEecCCCCc
Q 003957 681 EDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEI-PD-YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 681 ~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l-~~-~~~~~~L~~L~is~C~~~ 744 (784)
++|++++|.+ . ...+..+..+++|+.|+|++|... .+ |. +..+++|++|++++|+-.
T Consensus 108 ~~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 108 KTLMLRSNRI--T-CVGNDSFIGLSSVRLLSLYDNQIT----TVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CEEECTTSCC--C-CBCTTSSTTCTTCSEEECTTSCCC----CBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CEEECCCCcC--C-eECHhHcCCCccCCEEECCCCcCC----EECHHHhcCCCCCCEEEecCcCCc
Confidence 8888888865 3 333556777888888888887665 33 44 778888888888887743
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.81 E-value=1.9e-09 Score=122.51 Aligned_cols=155 Identities=15% Similarity=0.081 Sum_probs=76.2
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++|+.|+++.|.++. ++ ..+++|+.|++++| +.. . ..+. .+|++|++++ +.++. +.. .+++|
T Consensus 80 ~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-i-p~l~---~~L~~L~Ls~--N~l~~--lp~---~l~~L 142 (571)
T 3cvr_A 80 PQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-L-PELP---ASLKHLDVDN--NQLTM--LPE---LPALL 142 (571)
T ss_dssp TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-C-CCCC---TTCCEEECCS--SCCSC--CCC---CCTTC
T ss_pred CCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-c-chhh---cCCCEEECCC--CcCCC--CCC---cCccc
Confidence 445555555544442 11 23455555555555 221 1 1111 2566666666 33433 111 35566
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC--
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML-- 707 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L-- 707 (784)
+.|++++|.+..- ...+++|+.|+|++|. ++.... +. ++|+.|++++|.+ ..++. +.. +|
T Consensus 143 ~~L~Ls~N~l~~l------p~~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L----~~lp~-~~~--~L~~ 204 (571)
T 3cvr_A 143 EYINADNNQLTML------PELPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLL----ESLPA-VPV--RNHH 204 (571)
T ss_dssp CEEECCSSCCSCC------CCCCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCC----SSCCC-CC-------
T ss_pred cEEeCCCCccCcC------CCcCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCC----Cchhh-HHH--hhhc
Confidence 6666666654431 1135566666666655 332111 22 5666666666654 22222 221 44
Q ss_pred -----ceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCc
Q 003957 708 -----RLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 708 -----~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~ 744 (784)
+.|++++|... .+|. +..+++|+.|++++|+..
T Consensus 205 ~~~~L~~L~Ls~N~l~----~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 205 SEETEIFFRCRENRIT----HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp ---CCEEEECCSSCCC----CCCGGGGGSCTTEEEECCSSSCC
T ss_pred ccccceEEecCCCcce----ecCHHHhcCCCCCEEEeeCCcCC
Confidence 66777666554 4555 555667777777776643
No 116
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=9.2e-08 Score=102.36 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=55.9
Q ss_pred hcCCCccEEEecCCCC-------CCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHH
Q 003957 383 TLASNLQMLHMACCNG-------VDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYM 455 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~-------l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~ 455 (784)
..+++|+.|.+..... +....+..+...+|+|+.|+|+++. ...+..+..++|++|+|..|.++...+..+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~--~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN--NLSIGKKPRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB--TCBCCSCBCTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC--CceeccccCCCCcEEEEecCCCChHHHHHH
Confidence 4577888888865321 1111244556788899999998762 111222336789999998888887777666
Q ss_pred Hh-cCCCccEEeccC
Q 003957 456 VH-GNSGLKYLNARG 469 (784)
Q Consensus 456 ~~-~l~~L~~L~L~~ 469 (784)
.. .+|+|++|+|..
T Consensus 214 ~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHSBCTTCCEEEEEC
T ss_pred HHccCCCCcEEEEec
Confidence 43 688888888753
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.75 E-value=1.3e-09 Score=117.18 Aligned_cols=79 Identities=19% Similarity=0.117 Sum_probs=42.8
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
++|++|.+.++ +.++...- ..+.++++|++|++++|.+..- ....+.+|+.|.+.+++.++.. +.+..+++
T Consensus 177 ~~L~~l~l~~~-n~l~~i~~-~~f~~l~~L~~LdLs~N~l~~l-----p~~~~~~L~~L~~l~~~~l~~l--P~l~~l~~ 247 (350)
T 4ay9_X 177 TQLDELNLSDN-NNLEELPN-DVFHGASGPVILDISRTRIHSL-----PSYGLENLKKLRARSTYNLKKL--PTLEKLVA 247 (350)
T ss_dssp EEEEEEECTTC-TTCCCCCT-TTTTTEECCSEEECTTSCCCCC-----CSSSCTTCCEEECTTCTTCCCC--CCTTTCCS
T ss_pred cchhHHhhccC-CcccCCCH-HHhccCcccchhhcCCCCcCcc-----ChhhhccchHhhhccCCCcCcC--CCchhCcC
Confidence 45666666544 34432111 1234566777777777765431 0123566777776666654422 23456777
Q ss_pred CCEEEccc
Q 003957 680 LEDLLLRH 687 (784)
Q Consensus 680 L~~L~L~~ 687 (784)
|+.+++.+
T Consensus 248 L~~l~l~~ 255 (350)
T 4ay9_X 248 LMEASLTY 255 (350)
T ss_dssp CCEEECSC
T ss_pred hhhCcCCC
Confidence 77777765
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.73 E-value=3.4e-09 Score=106.32 Aligned_cols=132 Identities=17% Similarity=0.123 Sum_probs=84.8
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
++|++|++++ +.++.... ..+.++++|++|++++|.+.. .......++++|+.|+|++|. ++......+..+++
T Consensus 40 ~~L~~L~Ls~--n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHD--NQITKLEP-GVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCS--SCCCCCCT-TTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCCEEEcCC--CccCccCH-HHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCCc-CCccChhHhCcchh
Confidence 4555555555 23332111 123356677777777776533 111122457778888888775 55443344567888
Q ss_pred CCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcC
Q 003957 680 LEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 680 L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~ 745 (784)
|+.|++++|.+ ..++..+..+++|+.|++++|... .+|. +..+++|+.|++++|+...
T Consensus 114 L~~L~Ls~N~l----~~lp~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 114 LKELFMCCNKL----TELPRGIERLTHLTHLALDQNQLK----SIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCEEECCSSCC----CSCCTTGGGCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred hCeEeccCCcc----cccCcccccCCCCCEEECCCCcCC----ccCHHHHhCCCCCCEEEeeCCCccC
Confidence 88999988876 455666788889999999887655 3443 7888899999999887543
No 119
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.72 E-value=1.2e-07 Score=91.49 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=63.1
Q ss_pred HHHHHHcCCCCCeEecCCCCccCHHHHHHHHHh---CCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcC
Q 003957 309 LEFISKYCVSLGYINIKGCVSVTDVCISNLIRR---CVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLA 385 (784)
Q Consensus 309 l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~---~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l 385 (784)
+..+...+++|++|+|++|..+++.++..+... +++|++|+|++|.+++.+...++..+ ...
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L---------------~~n 92 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML---------------KVN 92 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH---------------HHC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH---------------HhC
Confidence 444444566666666666545565555444432 45666666666666666655543222 334
Q ss_pred CCccEEEecCCCCCCHHHHHHHH---HhCccccEEEe--cCCcCchhhhhhcc-----cCCcCEEEecCCccch
Q 003957 386 SNLQMLHMACCNGVDGMYLLELM---CQARKLKSLCL--SGTQLADKALYNFS-----GSSLEMLDVSDTMISG 449 (784)
Q Consensus 386 ~~L~~L~L~~c~~l~~~~l~~l~---~~~~~L~~L~L--s~~~l~~~~~~~l~-----~~~L~~L~Ls~~~i~~ 449 (784)
+.|++|+|++|. +++.+...+. ...+.|+.|+| ++|.+++.+...+. .++|++|+|++|.+..
T Consensus 93 ~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 93 NTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp SSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 456666665543 3444433332 23344555555 44555544433332 2445555555554443
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.72 E-value=4.9e-08 Score=100.04 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=69.0
Q ss_pred HhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEe
Q 003957 340 RRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCL 419 (784)
Q Consensus 340 ~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L 419 (784)
..+++|+.|++++|.++. ++ .+..+++|+.|++++|..-.-. . +..+++|+.|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~--------------------l~-~l~~l~~L~~L~L~~N~i~~~~---~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQS--------------------LA-GMQFFTNLKELHLSHNQISDLS---P-LKDLTKLEELSV 92 (263)
T ss_dssp HHHTTCSEEECTTSCCCC--------------------CT-TGGGCTTCCEEECCSSCCCCCG---G-GTTCSSCCEEEC
T ss_pred hhcCcCcEEECcCCCccc--------------------ch-HHhhCCCCCEEECCCCccCCCh---h-hccCCCCCEEEC
Confidence 356777888887777665 22 2366788888888887643211 1 367888888888
Q ss_pred cCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 420 SGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 420 s~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
++|.+++... +..++|++|++++|.++... .+..+++|++|+++++
T Consensus 93 ~~N~l~~l~~--~~~~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 93 NRNRLKNLNG--IPSACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNN 138 (263)
T ss_dssp CSSCCSCCTT--CCCSSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTS
T ss_pred CCCccCCcCc--cccCcccEEEccCCccCCCh---hhcCcccccEEECCCC
Confidence 8887776432 22378888888888776542 2467788888888776
No 121
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=1.3e-07 Score=91.26 Aligned_cols=122 Identities=12% Similarity=0.153 Sum_probs=98.8
Q ss_pred HHHHHHHHhCCCCCEEEeeCC-CCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHH---H
Q 003957 333 VCISNLIRRCVKLQSIIVCDT-SFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLEL---M 408 (784)
Q Consensus 333 ~~l~~l~~~~~~L~~L~Ls~~-~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l---~ 408 (784)
..+..++..+++|++|+|++| .+++.++..++..+ ...++|++|+|++|. +++.+...+ .
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L---------------~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L 89 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL---------------KTNTYVKKFSIVGTR-SNDPVAFALAEML 89 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH---------------TTCCSCCEEECTTSC-CCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH---------------HhCCCcCEEECcCCC-CChHHHHHHHHHH
Confidence 456677778999999999999 99999998875433 567899999999986 566665444 3
Q ss_pred HhCccccEEEecCCcCchhhhhhcc-----cCCcCEEEe--cCCccchhhH---HHHHhcCCCccEEeccCC
Q 003957 409 CQARKLKSLCLSGTQLADKALYNFS-----GSSLEMLDV--SDTMISGAAL---AYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 409 ~~~~~L~~L~Ls~~~l~~~~~~~l~-----~~~L~~L~L--s~~~i~~~~l---~~~~~~l~~L~~L~L~~c 470 (784)
...+.|+.|+|++|.+++.+...+. .++|++|+| ++|.+++.+. ...+...++|++|++++|
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 5678999999999999998866654 478999999 7899998774 444567799999999887
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.70 E-value=2.1e-08 Score=113.92 Aligned_cols=191 Identities=12% Similarity=0.051 Sum_probs=115.4
Q ss_pred CcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeecCC
Q 003957 182 EAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSS 261 (784)
Q Consensus 182 ~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~~~ 261 (784)
.+++.|+++++.-...+. ..+++|++|++++ +.++. ++ ..+++|++|+|++|.-..++.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~------~l~~~L~~L~Ls~-N~l~~--ip---~~l~~L~~L~Ls~N~l~~ip~--------- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPD------NLPPQITVLEITQ-NALIS--LP---ELPASLEYLDACDNRLSTLPE--------- 117 (571)
T ss_dssp TTCSEEECCSSCCSCCCS------CCCTTCSEEECCS-SCCSC--CC---CCCTTCCEEECCSSCCSCCCC---------
T ss_pred CCccEEEeCCCCCCccCH------hHcCCCCEEECcC-CCCcc--cc---cccCCCCEEEccCCCCCCcch---------
Confidence 378888888764322211 1247788888888 55653 22 357888998888653222211
Q ss_pred ccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHh
Q 003957 262 ALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRR 341 (784)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~ 341 (784)
.. .+|++|+|++|.. +. ++. .+++|++|++++|. ++. ++. .
T Consensus 118 -------------------------l~--~~L~~L~Ls~N~l-~~--lp~---~l~~L~~L~Ls~N~-l~~--lp~---~ 158 (571)
T 3cvr_A 118 -------------------------LP--ASLKHLDVDNNQL-TM--LPE---LPALLEYINADNNQ-LTM--LPE---L 158 (571)
T ss_dssp -------------------------CC--TTCCEEECCSSCC-SC--CCC---CCTTCCEEECCSSC-CSC--CCC---C
T ss_pred -------------------------hh--cCCCEEECCCCcC-CC--CCC---cCccccEEeCCCCc-cCc--CCC---c
Confidence 11 2788888888753 32 122 47788888888854 332 111 4
Q ss_pred CCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHH-HHHHhCccccEEEec
Q 003957 342 CVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLL-ELMCQARKLKSLCLS 420 (784)
Q Consensus 342 ~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~-~l~~~~~~L~~L~Ls 420 (784)
+++|+.|++++|.++. +|. +. ++|+.|+|++|..-.-..+. .+....+.|+.|+++
T Consensus 159 l~~L~~L~Ls~N~L~~--------------------lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTF--------------------LPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215 (571)
T ss_dssp CTTCCEEECCSSCCSC--------------------CCC-CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECC
T ss_pred CCCcCEEECCCCCCCC--------------------cch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecC
Confidence 6788888888887765 344 22 78888888887542100000 111222334888888
Q ss_pred CCcCchhhhhhcccCCcCEEEecCCccchhhHHHH
Q 003957 421 GTQLADKALYNFSGSSLEMLDVSDTMISGAALAYM 455 (784)
Q Consensus 421 ~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~ 455 (784)
+|.++......+..++|+.|+|++|.++...+..+
T Consensus 216 ~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 216 ENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp SSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred CCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 88887654333336788888888888877655443
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.69 E-value=5.8e-09 Score=102.93 Aligned_cols=149 Identities=14% Similarity=-0.023 Sum_probs=73.2
Q ss_pred CCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCC
Q 003957 576 RRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGL 655 (784)
Q Consensus 576 ~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L 655 (784)
++|++|++++|............+++|++|++++ +.++... ...+..+++|++|++++|.+..- ......++++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG--NKLQSLP-NGVFNKLTSLTYLNLSTNQLQSL--PNGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS--SCCCCCC-TTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCC--CccCccC-hhhcCCCCCcCEEECCCCcCCcc--CHhHhcCccCC
Confidence 4677777777621122222223446666666666 3444211 11223456666666666654321 11112345666
Q ss_pred cEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCE
Q 003957 656 ISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLST 735 (784)
Q Consensus 656 ~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~ 735 (784)
+.|++++|. ++......+.++++|+.|++++|.+ . ......+..+++|+.|++++|+.. ..+++|+.
T Consensus 103 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l--~-~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~ 169 (208)
T 2o6s_A 103 KELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL--K-SVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRY 169 (208)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--S-CCCTTTTTTCTTCCEEECCSCCBC---------CCTTTTHH
T ss_pred CEEEcCCCc-CcccCHhHhccCCcCCEEECCCCcc--c-eeCHHHhccCCCccEEEecCCCee---------cCCCCHHH
Confidence 666666654 3332222344566666666666644 2 222233455566666666655433 23345555
Q ss_pred EEecCCC
Q 003957 736 VKITKCK 742 (784)
Q Consensus 736 L~is~C~ 742 (784)
|+++.+.
T Consensus 170 L~~~~n~ 176 (208)
T 2o6s_A 170 LSEWINK 176 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.68 E-value=4.7e-09 Score=104.60 Aligned_cols=109 Identities=21% Similarity=0.144 Sum_probs=62.3
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
.+++|++|++++|.+..- ......++++|+.|+|++|. ++......+.++++|+.|+|++|.+ . ...+..+..+
T Consensus 54 ~l~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l--~-~~~~~~~~~l 127 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISEL--APDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKI--N-CLRVDAFQDL 127 (220)
T ss_dssp TCTTCCEEECCSSCCCEE--CTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTC
T ss_pred CCCCCCEEECCCCcCCCc--CHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCC--C-EeCHHHcCCC
Confidence 345566666665554321 01112345666666666655 4433333345677777777777754 3 3334456667
Q ss_pred CCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCC
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKS 743 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~ 743 (784)
++|+.|+|++|... .++. +..+++|++|++++|+.
T Consensus 128 ~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 128 HNLNLLSLYDNKLQ----TIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCEEECCCCcCC----EECHHHHhCCCCCCEEEeCCCCc
Confidence 77777777776655 2333 66677777777777664
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.66 E-value=5.8e-10 Score=127.27 Aligned_cols=103 Identities=15% Similarity=0.023 Sum_probs=62.5
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
.|+.|++++|.+..- .. ..++++|+.|+|++|. ++. .+..+.++++|+.|+|++|.+ ..++ .++.+++|
T Consensus 442 ~L~~L~Ls~n~l~~l---p~-~~~l~~L~~L~Ls~N~-l~~-lp~~~~~l~~L~~L~Ls~N~l----~~lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL---CH-LEQLLLVTHLDLSHNR-LRA-LPPALAALRCLEVLQASDNAL----ENVD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTSCCSSC---CC-GGGGTTCCEEECCSSC-CCC-CCGGGGGCTTCCEEECCSSCC----CCCG-GGTTCSSC
T ss_pred CceEEEecCCCCCCC---cC-ccccccCcEeecCccc-ccc-cchhhhcCCCCCEEECCCCCC----CCCc-ccCCCCCC
Confidence 567777777765441 11 3456677777777765 442 223455677777777777755 3344 56667777
Q ss_pred ceeccccccccCCCCCccc-ccCCCCCCEEEecCCCC
Q 003957 708 RLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 708 ~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
+.|+|++|... +. ..|. +..+++|+.|++++|+.
T Consensus 511 ~~L~Ls~N~l~-~~-~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 511 QELLLCNNRLQ-QS-AAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CEEECCSSCCC-SS-STTGGGGGCTTCCEEECTTSGG
T ss_pred cEEECCCCCCC-CC-CCcHHHhcCCCCCEEEecCCcC
Confidence 77777776554 11 1144 66777777777777764
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.63 E-value=4.3e-09 Score=100.86 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=37.6
Q ss_pred CCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHH--HHhcCCCCceeccccccccCCCCCccc---
Q 003957 652 WPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILD--AASKMPMLRLVSLDLCDASDGNFEIPD--- 726 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~--~l~~l~~L~~L~L~~c~~~~~~~~l~~--- 726 (784)
+++|+.|++++|. ++......+..+++|+.|++++|.+ ..++. .+..+++|+.|++++|+.. .+|.
T Consensus 63 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i----~~~~~~~~l~~l~~L~~L~l~~N~i~----~~~~~~~ 133 (176)
T 1a9n_A 63 LRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSL----VELGDLDPLASLKSLTYLCILRNPVT----NKKHYRL 133 (176)
T ss_dssp CSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCC----CCGGGGGGGGGCTTCCEEECCSSGGG----GSTTHHH
T ss_pred CCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCcC----CcchhhHhhhcCCCCCEEEecCCCCC----CcHhHHH
Confidence 4455555555543 3322111223455555555555544 22222 3445555555555555443 1122
Q ss_pred --ccCCCCCCEEEecCCC
Q 003957 727 --YADRYSLSTVKITKCK 742 (784)
Q Consensus 727 --~~~~~~L~~L~is~C~ 742 (784)
+..+++|+.||+++|+
T Consensus 134 ~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 134 YVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHHHCTTCSEETTEECC
T ss_pred HHHHHCCccceeCCCcCC
Confidence 3445555555555554
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.63 E-value=2.8e-09 Score=114.93 Aligned_cols=157 Identities=21% Similarity=0.151 Sum_probs=95.1
Q ss_pred CCCcEEEeeeeccChHHHHHHHh-hCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILE-SLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~-~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+.++.|+++.|.++.... ..+. ++++|+.|++++|. ..... .....+++|++|++++ +.++.... ..+.++++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~--N~l~~~~~-~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSS--NHLHTLDE-FLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCS--SCCCEECT-TTTTTCTT
T ss_pred CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCC--CcCCcCCH-HHhCCCcC
Confidence 468889998888776422 2233 67888888888883 32222 2233557888888888 45653221 22346778
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHh---hCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSL---FNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l---~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
|++|++++|.+... ......++++|+.|+|++|. ++......+ ..+++|+.|+|++|.+ . ......+..++
T Consensus 114 L~~L~L~~N~i~~~--~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l--~-~l~~~~~~~l~ 187 (361)
T 2xot_A 114 LEVLLLYNNHIVVV--DRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL--K-KLPLTDLQKLP 187 (361)
T ss_dssp CCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC--C-CCCHHHHHHSC
T ss_pred CCEEECCCCcccEE--CHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC--C-ccCHHHhhhcc
Confidence 88888888776531 11122457778888887766 443322233 3577788888888765 3 33344566666
Q ss_pred C--Cceecccccccc
Q 003957 706 M--LRLVSLDLCDAS 718 (784)
Q Consensus 706 ~--L~~L~L~~c~~~ 718 (784)
. |+.|.|.+|+..
T Consensus 188 ~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 188 AWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHTTEECCSSCEE
T ss_pred HhhcceEEecCCCcc
Confidence 5 377777776655
No 128
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=3.5e-07 Score=97.82 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=49.9
Q ss_pred hhhcCCCccEEEeccc-cC--------cccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChH
Q 003957 496 ELGRTRKLEEIVLGWG-FS--------FLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDS 566 (784)
Q Consensus 496 ~l~~l~~L~~L~L~~~-~~--------~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~ 566 (784)
.+..+++|+.|.++.. .. ......++..+++|+.|.+.++..+.- ..+ ..++|++|++.++.+++.
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECSBCCHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecCCCChH
Confidence 4455778888888432 11 112345556677788888876632211 111 256777777776677776
Q ss_pred HHHHHHh-hCCCCcEEEec
Q 003957 567 IIINILE-SLRRLQVLAIC 584 (784)
Q Consensus 567 ~l~~~~~-~l~~L~~L~Ls 584 (784)
++..+.. .+++|+.|+|+
T Consensus 209 ~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHHHccCCCCcEEEEe
Confidence 6655543 56777777765
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.59 E-value=1.4e-09 Score=124.15 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=44.6
Q ss_pred hhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-Chh--HHHHhhc
Q 003957 521 KPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDL--SISSFKL 597 (784)
Q Consensus 521 ~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~--~~~~l~~ 597 (784)
+..+++|+.|+++++ .++. +..++. +++|+.|+++.|.+++...+..+.++++|+.|++++|. ... ....+..
T Consensus 482 ~~~l~~L~~L~Ls~N-~l~~--lp~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 482 LAALRCLEVLQASDN-ALEN--VDGVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557 (567)
T ss_dssp GGGCTTCCEEECCSS-CCCC--CGGGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred hhcCCCCCEEECCCC-CCCC--CcccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence 444555666666655 2222 112333 66677777776666653213446677777777777772 211 1222333
Q ss_pred CCCCccEEEc
Q 003957 598 PLPNLRKLKL 607 (784)
Q Consensus 598 ~~~~L~~L~L 607 (784)
.+|+|+.|++
T Consensus 558 ~lp~L~~L~l 567 (567)
T 1dce_A 558 MLPSVSSILT 567 (567)
T ss_dssp HCTTCSEEEC
T ss_pred HCcccCccCC
Confidence 4577777753
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.57 E-value=1.9e-08 Score=96.26 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=39.5
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHH-HHHhhCCCCCCEEEcccCCCCCChhHHHH----
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYG-VTSLFNCIALEDLLLRHNGPGIPRDFILD---- 699 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~-~~~l~~~~~L~~L~L~~n~~gl~~~~~~~---- 699 (784)
.+++|+.|++++|.+..- ...+..++++|+.|++++|. ++... +..+..+++|+.|++++|.+ ..++.
T Consensus 62 ~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i----~~~~~~~~~ 134 (176)
T 1a9n_A 62 LLRRLKTLLVNNNRICRI--GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV----TNKKHYRLY 134 (176)
T ss_dssp CCSSCCEEECCSSCCCEE--CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG----GGSTTHHHH
T ss_pred cCCCCCEEECCCCccccc--CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC----CCcHhHHHH
Confidence 344555555555543321 01112235555555555554 33211 12344555666666665543 22222
Q ss_pred HHhcCCCCceeccccccc
Q 003957 700 AASKMPMLRLVSLDLCDA 717 (784)
Q Consensus 700 ~l~~l~~L~~L~L~~c~~ 717 (784)
.+..+++|+.|+++.|..
T Consensus 135 ~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 135 VIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCSEETTEECCH
T ss_pred HHHHCCccceeCCCcCCH
Confidence 355556666666655543
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.57 E-value=8.3e-09 Score=102.79 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=63.4
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++|+.|+++.|.++... ...+.++++|+.|++++|. ....... +.++++|
T Consensus 32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~----------------------------~~~l~~L 82 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDA----------------------------FQGLRSL 82 (220)
T ss_dssp TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTT----------------------------TTTCSSC
T ss_pred cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHH----------------------------hhCCcCC
Confidence 46777777766665421 1134455666666666662 2111111 1233444
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCce
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRL 709 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~ 709 (784)
++|++++|.+.. .......++++|+.|+|++|. ++...+..+.++++|+.|+|++|.+ . ...+..+..+++|+.
T Consensus 83 ~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 83 NSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKL--Q-TIAKGTFSPLRAIQT 156 (220)
T ss_dssp CEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--S-CCCTTTTTTCTTCCE
T ss_pred CEEECCCCcCCc--cCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcC--C-EECHHHHhCCCCCCE
Confidence 444444444332 111112334555555555544 3333333444556666666666644 2 222233555566666
Q ss_pred ecccccccc
Q 003957 710 VSLDLCDAS 718 (784)
Q Consensus 710 L~L~~c~~~ 718 (784)
|++++|+..
T Consensus 157 L~L~~N~~~ 165 (220)
T 2v9t_B 157 MHLAQNPFI 165 (220)
T ss_dssp EECCSSCEE
T ss_pred EEeCCCCcC
Confidence 666655543
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.55 E-value=9.1e-09 Score=102.51 Aligned_cols=86 Identities=10% Similarity=-0.007 Sum_probs=39.6
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCc
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELV 630 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~ 630 (784)
+.++.|+++.|.++.......+..+++|+.|++++|............+++|++|++++ +.++.... ..+.++++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~--N~l~~~~~-~~~~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS--NRLENVQH-KMFKGLESLK 108 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--SCCCCCCG-GGGTTCSSCC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC--CccCccCH-hHhcCCcCCC
Confidence 35677777766666532222345666677777666621111111122335555555555 23332111 1123344455
Q ss_pred EEEecCCCC
Q 003957 631 ELSLVGCTL 639 (784)
Q Consensus 631 ~L~Ls~c~~ 639 (784)
+|++++|.+
T Consensus 109 ~L~Ls~N~l 117 (220)
T 2v70_A 109 TLMLRSNRI 117 (220)
T ss_dssp EEECTTSCC
T ss_pred EEECCCCcC
Confidence 555554443
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.49 E-value=2.7e-08 Score=107.22 Aligned_cols=155 Identities=17% Similarity=0.113 Sum_probs=110.9
Q ss_pred CCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 576 RRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 576 ~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
+.++.|++++| +.......+...+++|++|++++ +.++.... ..+.++++|++|+|++|.+..- ......++++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~--N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH--NHLNFISS-EAFVPVPNLRYLDLSSNHLHTL--DEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS--SCCCEECT-TTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTT
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCC--CcCCccCh-hhccCCCCCCEEECCCCcCCcC--CHHHhCCCcC
Confidence 36899999999 33333222332679999999999 56764332 2345788999999999986541 1223356899
Q ss_pred CcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHH-HH---hcCCCCceeccccccccCCCCCccc--cc
Q 003957 655 LISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILD-AA---SKMPMLRLVSLDLCDASDGNFEIPD--YA 728 (784)
Q Consensus 655 L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~-~l---~~l~~L~~L~L~~c~~~~~~~~l~~--~~ 728 (784)
|+.|+|++|. ++......+.++++|+.|+|++|.+ . .++. .+ ..+++|+.|+|++|... .+|. +.
T Consensus 114 L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l--~--~l~~~~~~~~~~l~~L~~L~L~~N~l~----~l~~~~~~ 184 (361)
T 2xot_A 114 LEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQI--S--RFPVELIKDGNKLPKLMLLDLSSNKLK----KLPLTDLQ 184 (361)
T ss_dssp CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC--C--SCCGGGTC----CTTCCEEECCSSCCC----CCCHHHHH
T ss_pred CCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcC--C--eeCHHHhcCcccCCcCCEEECCCCCCC----ccCHHHhh
Confidence 9999999987 6655556677899999999999976 3 3333 23 57899999999998766 4454 66
Q ss_pred CCCC--CCEEEecCCCCc
Q 003957 729 DRYS--LSTVKITKCKSK 744 (784)
Q Consensus 729 ~~~~--L~~L~is~C~~~ 744 (784)
.++. |+.|++++|+-.
T Consensus 185 ~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 185 KLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HSCHHHHTTEECCSSCEE
T ss_pred hccHhhcceEEecCCCcc
Confidence 6666 488999998754
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.46 E-value=6.9e-08 Score=96.73 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=86.4
Q ss_pred CCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCC
Q 003957 627 SELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706 (784)
Q Consensus 627 ~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~ 706 (784)
++|+.|++++|.+.... .....++++|+.|+|++|. ++......+.++++|+.|+|++|.+ . ......+..+++
T Consensus 40 ~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l--~-~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLE--PGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL--T-VLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCTT
T ss_pred CCCCEEEcCCCccCccC--HHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcC--C-ccChhHhCcchh
Confidence 68999999999876521 2223568999999999987 5544444567899999999999976 4 333455788999
Q ss_pred CceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCcC
Q 003957 707 LRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 707 L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~ 745 (784)
|+.|++++|... .+|. +..+++|+.|++++|....
T Consensus 114 L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 114 LKELFMCCNKLT----ELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp CCEEECCSSCCC----SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred hCeEeccCCccc----ccCcccccCCCCCEEECCCCcCCc
Confidence 999999998776 5677 8899999999999997543
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.39 E-value=1.4e-07 Score=91.68 Aligned_cols=105 Identities=24% Similarity=0.213 Sum_probs=62.1
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
+|++|++++|.+..- .....++++|+.|+|++|. ++......+.++++|+.|+|++|.+ . ...+..+.++++|
T Consensus 32 ~l~~L~L~~n~i~~i---p~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l--~-~i~~~~f~~l~~L 104 (193)
T 2wfh_A 32 DVTELYLDGNQFTLV---PKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRL--R-CIPPRTFDGLKSL 104 (193)
T ss_dssp TCCEEECCSSCCCSC---CGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-BCCTTTTTTCTTC
T ss_pred CCCEEECCCCcCchh---HHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCcc--C-EeCHHHhCCCCCC
Confidence 566666666554321 0122346666666666655 4433334455677777777777754 3 3334456677777
Q ss_pred ceeccccccccCCCCCccc--ccCCCCCCEEEecCCCC
Q 003957 708 RLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKS 743 (784)
Q Consensus 708 ~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~ 743 (784)
+.|+|++|... .+|. +..+++|+.|++++|+-
T Consensus 105 ~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 105 RLLSLHGNDIS----VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CEEECCSSCCC----BCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEEECCCCCCC----eeChhhhhcCccccEEEeCCCCe
Confidence 77777776655 3343 66677777777777653
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.35 E-value=3.8e-07 Score=99.34 Aligned_cols=132 Identities=18% Similarity=0.230 Sum_probs=60.2
Q ss_pred HhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChH---HHHHH
Q 003957 572 LESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSD---SQLII 648 (784)
Q Consensus 572 ~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~---~~~~~ 648 (784)
+.+|++|+.+++..+........|.. .+|+.+.+.. .++..+- ..+.+|++|+.+++.++....+. .....
T Consensus 222 F~~~~~L~~l~l~~~l~~I~~~aF~~--~~L~~i~lp~---~i~~I~~-~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 222 FLKTSQLKTIEIPENVSTIGQEAFRE--SGITTVKLPN---GVTNIAS-RAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp TTTCTTCCCEECCTTCCEECTTTTTT--CCCSEEEEET---TCCEECT-TTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred hhCCCCCCEEecCCCccCcccccccc--CCccEEEeCC---CccEECh-hHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 44555666666554422111112221 4566666643 2222111 12345667777777665432000 01112
Q ss_pred HhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccc
Q 003957 649 SQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 649 ~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~ 716 (784)
..+|++|+.+.|.. .++..+...|.+|++|+.+.|..+ +. .....++.++ +|+.+.+.++.
T Consensus 296 F~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~---l~-~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 296 LEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN---VT-QINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT---CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred hhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc---cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence 34566666666653 244444444555666666666443 12 2223345555 56666665543
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.33 E-value=2.1e-07 Score=89.05 Aligned_cols=109 Identities=19% Similarity=0.141 Sum_probs=73.3
Q ss_pred CCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCC
Q 003957 627 SELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706 (784)
Q Consensus 627 ~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~ 706 (784)
++|++|++++|.... .......++++|+.|++++|. ++......+.++++|+.|++++|.+ . ......+..+++
T Consensus 28 ~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l--~-~~~~~~~~~l~~ 101 (177)
T 2o6r_A 28 SSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKL--Q-SLPNGVFDKLTQ 101 (177)
T ss_dssp TTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCTT
T ss_pred CCCcEEEeCCCcccE--eCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCc--c-ccCHHHhhCCcc
Confidence 467777777766543 111122456778888887765 5533333456788888888888865 3 333445677888
Q ss_pred CceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcC
Q 003957 707 LRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 707 L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~ 745 (784)
|+.|++++|... .+|. +..+++|++|++++|+...
T Consensus 102 L~~L~l~~N~l~----~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 102 LKELALDTNQLK----SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCEEECcCCcce----EeCHHHhcCCcccCEEEecCCCeec
Confidence 999999887655 3455 6778899999999887543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.30 E-value=1.7e-07 Score=91.60 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=103.3
Q ss_pred CCccEEecCCCC-CCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCc
Q 003957 291 SKITKLTLEGRS-DMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPY 369 (784)
Q Consensus 291 ~~L~~L~Ls~~~-~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~ 369 (784)
-.|+...+.+.. .++.. ......+++|++|++++|. ++. ++ .+.++++|+.|++++|.++.
T Consensus 23 l~l~~~~l~~~~~~l~~l--~~~~~~l~~L~~L~ls~n~-l~~--l~-~~~~l~~L~~L~l~~n~l~~------------ 84 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKM--DATLSTLKACKHLALSTNN-IEK--IS-SLSGMENLRILSLGRNLIKK------------ 84 (198)
T ss_dssp TTCSEEECCBCCTTCCCC--HHHHHHTTTCSEEECSEEE-ESC--CC-CHHHHTTCCEEEEEEEEECS------------
T ss_pred cchheeEeccccCcHhhh--hHHHhcCCCCCEEECCCCC-Ccc--cc-ccccCCCCCEEECCCCCccc------------
Confidence 356666666542 12221 1123458899999999864 333 22 45678999999999998774
Q ss_pred cCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhh-hhcc-cCCcCEEEecCCcc
Q 003957 370 CNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKAL-YNFS-GSSLEMLDVSDTMI 447 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~-~~l~-~~~L~~L~Ls~~~i 447 (784)
+|..+..+++|+.|++++|.... ++. ...+++|+.|++++|.+++... ..+. .++|++|++++|.+
T Consensus 85 --------l~~~~~~~~~L~~L~L~~N~l~~---l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 85 --------IENLDAVADTLEELWISYNQIAS---LSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp --------CSSHHHHHHHCSEEEEEEEECCC---HHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred --------ccchhhcCCcCCEEECcCCcCCc---CCc-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 45555667899999999986533 333 3778999999999999887543 4444 68999999999977
Q ss_pred chhh---------HHHHHhcCCCccEEe
Q 003957 448 SGAA---------LAYMVHGNSGLKYLN 466 (784)
Q Consensus 448 ~~~~---------l~~~~~~l~~L~~L~ 466 (784)
+... ....+..+++|++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5442 223457899999997
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.30 E-value=1.7e-07 Score=110.37 Aligned_cols=108 Identities=15% Similarity=0.039 Sum_probs=60.9
Q ss_pred hcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhc
Q 003957 624 QNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASK 703 (784)
Q Consensus 624 ~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~ 703 (784)
..++.|+.|+|++|.+.. ....+ .++++|+.|+|++|. ++ ..+..+.++++|+.|+|++|.+ ..++..++.
T Consensus 221 ~~l~~L~~L~Ls~n~l~~--l~~~~-~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N~l----~~lp~~~~~ 291 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFN--ISANI-FKYDFLTRLYLNGNS-LT-ELPAEIKNLSNLRVLDLSHNRL----TSLPAELGS 291 (727)
T ss_dssp -CCCCCCEEECTTSCCSC--CCGGG-GGCCSCSCCBCTTSC-CS-CCCGGGGGGTTCCEEECTTSCC----SSCCSSGGG
T ss_pred ccCCCCcEEECCCCCCCC--CChhh-cCCCCCCEEEeeCCc-Cc-ccChhhhCCCCCCEEeCcCCcC----CccChhhcC
Confidence 345566666666665442 11111 146666666666654 43 2223445666666666666655 344555666
Q ss_pred CCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCc
Q 003957 704 MPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 704 l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~ 744 (784)
+++|+.|+|++|... .+|. +..+++|+.|+|++|+..
T Consensus 292 l~~L~~L~L~~N~l~----~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT----TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GTTCSEEECCSSCCC----CCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCEEECCCCCCC----ccChhhhcCCCccEEeCCCCccC
Confidence 666666666666443 4455 666666777777666643
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.27 E-value=5.5e-08 Score=94.52 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCC
Q 003957 652 WPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADR 730 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~ 730 (784)
+++|+.|+|++|. ++...+..+.++++|++|++++|.+ . ...+..+.++++|+.|++++|... + ..|. +..+
T Consensus 53 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~L~~N~l~-~--~~~~~~~~l 125 (192)
T 1w8a_A 53 LPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKI--K-EISNKMFLGLHQLKTLNLYDNQIS-C--VMPGSFEHL 125 (192)
T ss_dssp CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCC--C-EECSSSSTTCTTCCEEECCSSCCC-E--ECTTSSTTC
T ss_pred CCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCcC--C-ccCHHHhcCCCCCCEEECCCCcCC-e--eCHHHhhcC
Confidence 4444444444433 3322223333444555555555433 2 222222444455555555544433 1 0122 4445
Q ss_pred CCCCEEEecCCC
Q 003957 731 YSLSTVKITKCK 742 (784)
Q Consensus 731 ~~L~~L~is~C~ 742 (784)
++|++|++++|+
T Consensus 126 ~~L~~L~L~~N~ 137 (192)
T 1w8a_A 126 NSLTSLNLASNP 137 (192)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEeCCCC
Confidence 555555555544
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.23 E-value=1.5e-07 Score=91.98 Aligned_cols=126 Identities=25% Similarity=0.241 Sum_probs=68.5
Q ss_pred HHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHH
Q 003957 571 ILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIIS 649 (784)
Q Consensus 571 ~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~ 649 (784)
.+..+++|++|++++| +.... .+ ..+++|++|+++++ .++. +......+++|++|++++|....-. . .
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~-~~l~~L~~L~l~~n--~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~---~-~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SL-SGMENLRILSLGRN--LIKK--IENLDAVADTLEELWISYNQIASLS---G-I 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CH-HHHTTCCEEEEEEE--EECS--CSSHHHHHHHCSEEEEEEEECCCHH---H-H
T ss_pred HHhcCCCCCEEECCCCCCcccc--cc-ccCCCCCEEECCCC--Cccc--ccchhhcCCcCCEEECcCCcCCcCC---c-c
Confidence 4455666666666665 22211 12 22356666666663 3432 1222233457777777777655421 1 2
Q ss_pred hcCCCCcEEeecCCCCCCH-HHHHHhhCCCCCCEEEcccCCCCCChhHH----------HHHHhcCCCCceec
Q 003957 650 QGWPGLISLHLEECGDITA-YGVTSLFNCIALEDLLLRHNGPGIPRDFI----------LDAASKMPMLRLVS 711 (784)
Q Consensus 650 ~~~~~L~~L~L~~c~~i~~-~~~~~l~~~~~L~~L~L~~n~~gl~~~~~----------~~~l~~l~~L~~L~ 711 (784)
.++++|+.|++++|. ++. ..+..+..+++|+.|++++|.+ . ..+ ...+..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l--~-~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL--Y-NDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH--H-HHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc--c-cccccccchHHHHHHHHHhCCCcEEEC
Confidence 346677777777766 443 2334566777777777777744 2 111 12366677777765
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.23 E-value=1.8e-07 Score=101.94 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=37.9
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--cc
Q 003957 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YA 728 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~ 728 (784)
+|.+|+.+.+... ++..+...+.+|++|+.++|..+ +. .....++.+|.+|+.+.+..+ ++ .++. |.
T Consensus 295 ~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~---v~-~I~~~aF~~c~~L~~i~lp~~--l~---~I~~~aF~ 363 (394)
T 4fs7_A 295 GCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL---VE-EIGKRSFRGCTSLSNINFPLS--LR---KIGANAFQ 363 (394)
T ss_dssp TCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT---CC-EECTTTTTTCTTCCEECCCTT--CC---EECTTTBT
T ss_pred ccccccccccccc--cceechhhhcCCCCCCEEEeCCc---cc-EEhHHhccCCCCCCEEEECcc--cc---EehHHHhh
Confidence 4555555555432 33333334445666666665442 12 222334555666666665432 21 1222 56
Q ss_pred CCCCCCEEEecC
Q 003957 729 DRYSLSTVKITK 740 (784)
Q Consensus 729 ~~~~L~~L~is~ 740 (784)
+|++|+++++..
T Consensus 364 ~C~~L~~i~lp~ 375 (394)
T 4fs7_A 364 GCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEEEEEG
T ss_pred CCCCCCEEEECC
Confidence 666666666643
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.22 E-value=2.8e-07 Score=89.45 Aligned_cols=129 Identities=15% Similarity=-0.003 Sum_probs=93.0
Q ss_pred cEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEE
Q 003957 579 QVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISL 658 (784)
Q Consensus 579 ~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L 658 (784)
+.++++++.-...+.. ..++|++|++++ +.++.......+..+++|++|++++|.+.... .....++++|+.|
T Consensus 11 ~~l~~s~~~l~~ip~~---~~~~l~~L~l~~--n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD---IPLHTTELLLND--NELGRISSDGLFGRLPHLVKLELKRNQLTGIE--PNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSC---CCTTCSEEECCS--CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCcCccC---CCCCCCEEECCC--CcCCccCCccccccCCCCCEEECCCCCCCCcC--HhHcCCcccCCEE
Confidence 5667766621111111 224899999999 56764332223567899999999999876521 2233568999999
Q ss_pred eecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 659 HLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 659 ~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+|++|. ++......+.++++|+.|++++|.+ . ...+..+..+++|+.|++++|+..
T Consensus 84 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGENK-IKEISNKMFLGLHQLKTLNLYDNQI--S-CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSCC-CCEECSSSSTTCTTCCEEECCSSCC--C-EECTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCCc-CCccCHHHhcCCCCCCEEECCCCcC--C-eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999987 6655555567899999999999976 4 445667888999999999998876
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.21 E-value=1.2e-07 Score=111.51 Aligned_cols=152 Identities=15% Similarity=-0.031 Sum_probs=92.1
Q ss_pred HHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHH
Q 003957 569 INILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLII 648 (784)
Q Consensus 569 ~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~ 648 (784)
...+..+++|+.|+|++|........+. .+++|++|+|++ +.++ .+...+.++++|+.|+|++|.+.. . ...
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~--N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--l-p~~ 288 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNG--NSLT--ELPAEIKNLSNLRVLDLSHNRLTS--L-PAE 288 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTT--SCCS--CCCGGGGGGTTCCEEECTTSCCSS--C-CSS
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeC--CcCc--ccChhhhCCCCCCEEeCcCCcCCc--c-Chh
Confidence 4456778899999999983222222233 568999999999 4676 233334678899999999998763 1 112
Q ss_pred HhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCC-CceeccccccccCCCCCcccc
Q 003957 649 SQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM-LRLVSLDLCDASDGNFEIPDY 727 (784)
Q Consensus 649 ~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~-L~~L~L~~c~~~~~~~~l~~~ 727 (784)
..++++|+.|+|++|. ++.. +..+.++++|+.|+|++|.+ . ..++..+..+.. +..|.+++|... + .+|
T Consensus 289 ~~~l~~L~~L~L~~N~-l~~l-p~~~~~l~~L~~L~L~~N~l--~-~~~p~~~~~~~~~~~~l~l~~N~l~-~--~~p-- 358 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNM-VTTL-PWEFGNLCNLQFLGVEGNPL--E-KQFLKILTEKSVTGLIFYLRDNRPE-I--PLP-- 358 (727)
T ss_dssp GGGGTTCSEEECCSSC-CCCC-CSSTTSCTTCCCEECTTSCC--C-SHHHHHHHHHHHHHHHHHHHHCCCC-C--CCC--
T ss_pred hcCCCCCCEEECCCCC-CCcc-ChhhhcCCCccEEeCCCCcc--C-CCChHHHhhcchhhhHHhhccCccc-C--cCc--
Confidence 3568999999999986 5532 33467899999999999976 5 566666544321 223566665544 2 122
Q ss_pred cCCCCCCEEEecCC
Q 003957 728 ADRYSLSTVKITKC 741 (784)
Q Consensus 728 ~~~~~L~~L~is~C 741 (784)
..|+.|+++.+
T Consensus 359 ---~~l~~l~l~~n 369 (727)
T 4b8c_D 359 ---HERRFIEINTD 369 (727)
T ss_dssp ---CC---------
T ss_pred ---cccceeEeecc
Confidence 45666777666
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.15 E-value=5.6e-07 Score=87.42 Aligned_cols=109 Identities=14% Similarity=0.027 Sum_probs=62.8
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
++|++|++++ +.++... ..+.++++|+.|++++|.+..- ......++++|+.|+|++|. ++......+.++++
T Consensus 31 ~~l~~L~L~~--n~i~~ip--~~~~~l~~L~~L~Ls~N~i~~i--~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDG--NQFTLVP--KELSNYKHLTLIDLSNNRISTL--SNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKS 103 (193)
T ss_dssp TTCCEEECCS--SCCCSCC--GGGGGCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTT
T ss_pred CCCCEEECCC--CcCchhH--HHhhcccCCCEEECCCCcCCEe--CHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCC
Confidence 3455555555 3343211 2334566677777776665431 11122356777777777765 55444445567777
Q ss_pred CCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 680 LEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 680 L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
|+.|+|++|.+ . ......+..+++|+.|++++|+..
T Consensus 104 L~~L~L~~N~l--~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 104 LRLLSLHGNDI--S-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCC--C-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCC--C-eeChhhhhcCccccEEEeCCCCee
Confidence 77777777765 3 223334667777788877777654
No 146
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.05 E-value=4.7e-05 Score=72.95 Aligned_cols=121 Identities=16% Similarity=0.197 Sum_probs=66.4
Q ss_pred HHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhC---CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhc
Q 003957 308 DLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRC---VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTL 384 (784)
Q Consensus 308 ~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~---~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 384 (784)
.+..+...-+.|++|+|+++..+++.+...+...+ ..|+.|+|++|.|++.+..+++
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA-------------------- 91 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI-------------------- 91 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH--------------------
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH--------------------
Confidence 34444444555666666554455555555444332 4455555555555555444332
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-----cCCcCEEEecCC---ccchhh---HH
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-----GSSLEMLDVSDT---MISGAA---LA 453 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-----~~~L~~L~Ls~~---~i~~~~---l~ 453 (784)
......+.|+.|+|++|.+++.+...+. ...|++|+|+++ .+.+.+ +.
T Consensus 92 ---------------------~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 92 ---------------------ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp ---------------------HHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred ---------------------HHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 1223445566666666666666555443 356777777654 445543 44
Q ss_pred HHHhcCCCccEEeccC
Q 003957 454 YMVHGNSGLKYLNARG 469 (784)
Q Consensus 454 ~~~~~l~~L~~L~L~~ 469 (784)
..+...+.|+.|+++.
T Consensus 151 ~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 151 MAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHCSSCCEEECCC
T ss_pred HHHHhCCCcCeEeccC
Confidence 4556667788887754
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.05 E-value=2.3e-06 Score=93.15 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=78.0
Q ss_pred HhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCC-CCChHHHHHHHh
Q 003957 572 LESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCT-LLSSDSQLIISQ 650 (784)
Q Consensus 572 ~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~-~~~~~~~~~~~~ 650 (784)
+.++..|+.+.+..+....... ....++.++.+.... ..+.+. .+..|.+|+.+.+.++- .+. .....
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~-~F~~~~~l~~~~~~~--~~i~~~----~F~~~~~L~~i~l~~~i~~I~----~~aF~ 317 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGS-LFYNCSGLKKVIYGS--VIVPEK----TFYGCSSLTEVKLLDSVKFIG----EEAFE 317 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSC-TTTTCTTCCEEEECS--SEECTT----TTTTCTTCCEEEECTTCCEEC----TTTTT
T ss_pred ccccccceeEEcCCCcceeecc-ccccccccceeccCc--eeeccc----cccccccccccccccccceec----hhhhc
Confidence 4456666666665542211111 123345666665554 222221 23457778887776531 111 11234
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccC
Q 003957 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YAD 729 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~ 729 (784)
+|.+|+.+.|.. .++..+...|.+|++|+.+++..+ + . .....++.+|++|+.+.+..+-.. +.. |.+
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l--~-~I~~~aF~~C~~L~~i~lp~~~~~-----~~~~F~~ 386 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-L--R-KIGANAFQGCINLKKVELPKRLEQ-----YRYDFED 386 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-C--C-EECTTTBTTCTTCCEEEEEGGGGG-----GGGGBCT
T ss_pred CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-c--c-EehHHHhhCCCCCCEEEECCCCEE-----hhheecC
Confidence 677788887754 255555556667888888887665 2 2 333455777888888877643211 122 677
Q ss_pred CCCCCEE
Q 003957 730 RYSLSTV 736 (784)
Q Consensus 730 ~~~L~~L 736 (784)
|++|+.+
T Consensus 387 c~~L~~I 393 (394)
T 4fs7_A 387 TTKFKWI 393 (394)
T ss_dssp TCEEEEE
T ss_pred CCCCcEE
Confidence 7777664
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.05 E-value=2.6e-06 Score=80.82 Aligned_cols=104 Identities=18% Similarity=0.067 Sum_probs=71.2
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
..+.++++++....- .. .-.++|+.|+|++|. ++......+.++++|+.|+|++|.+ . ...+..+..+++|
T Consensus 10 ~~~~l~~s~n~l~~i--p~---~~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l--~-~l~~~~f~~l~~L 80 (170)
T 3g39_A 10 SGTTVDCSGKSLASV--PT---GIPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQL--T-VLPAGVFDKLTQL 80 (170)
T ss_dssp ETTEEECTTSCCSSC--CS---CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC--C-CCCTTTTTTCTTC
T ss_pred CCCEEEeCCCCcCcc--Cc---cCCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCc--C-ccChhhccCCCCC
Confidence 356777777665431 11 113678888888876 5544445566788888888888865 3 3334456788888
Q ss_pred ceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCc
Q 003957 708 RLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 708 ~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~ 744 (784)
+.|+|++|... .+|. +..+++|++|++++|+..
T Consensus 81 ~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 81 TQLSLNDNQLK----SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECCCCccC----EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88888887665 3444 778888999999888754
No 149
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.98 E-value=6.5e-05 Score=71.97 Aligned_cols=118 Identities=7% Similarity=0.075 Sum_probs=87.8
Q ss_pred CCCccEEecCCCCCCChHHHHHHHH---cCCCCCeEecCCCCccCHHHHHHHHH---hCCCCCEEEeeCCCCCHHHHHHh
Q 003957 290 PSKITKLTLEGRSDMCDADLEFISK---YCVSLGYINIKGCVSVTDVCISNLIR---RCVKLQSIIVCDTSFGVYSIRAL 363 (784)
Q Consensus 290 l~~L~~L~Ls~~~~l~~~~l~~l~~---~~~~L~~L~L~~c~~l~~~~l~~l~~---~~~~L~~L~Ls~~~i~~~~l~~l 363 (784)
-+.|++|+|+++..+++.+...++. .-..|++|+|++| .+++.+..++.. .-+.|++|+|++|.|++.|..++
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3789999999877899988777665 3457999999995 678877655554 45899999999999999999998
Q ss_pred hccCCccCcccccccchhhhcCCCccEEEecCCC--CCCHHHH---HHHHHhCccccEEEecCCc
Q 003957 364 CSEVPYCNSSALCGKRNFNTLASNLQMLHMACCN--GVDGMYL---LELMCQARKLKSLCLSGTQ 423 (784)
Q Consensus 364 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~--~l~~~~l---~~l~~~~~~L~~L~Ls~~~ 423 (784)
+..+ ..-+.|++|+|+++. .+.+..- .......+.|+.|+++.+.
T Consensus 119 a~aL---------------~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRST---------------LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHT---------------TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHH---------------hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 7666 445579999998652 4565543 3333566677777766553
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.92 E-value=2.6e-06 Score=92.73 Aligned_cols=215 Identities=11% Similarity=0.064 Sum_probs=137.6
Q ss_pred CccEEEeccccCcccHhhhhhhcCcccEEEecCC-CCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcE
Q 003957 502 KLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLG-GSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQV 580 (784)
Q Consensus 502 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~-~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~ 580 (784)
+|+.+.+..+...+...++.. .+|+.+.+... ..+.+..+ ..|++|+.+++..+.++..+-.. +. +.+|+.
T Consensus 136 ~L~~i~l~~~i~~I~~~aF~~--~~L~~i~lp~~l~~I~~~aF----~~c~~L~~l~l~~n~l~~I~~~a-F~-~~~L~~ 207 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMAFFN--STVQEIVFPSTLEQLKEDIF----YYCYNLKKADLSKTKITKLPAST-FV-YAGIEE 207 (401)
T ss_dssp CCSEEECCTTCCEECTTTTTT--CCCCEEECCTTCCEECSSTT----TTCTTCCEEECTTSCCSEECTTT-TT-TCCCSE
T ss_pred CccEEEeCCCccEECHHhcCC--CCceEEEeCCCccEehHHHh----hCcccCCeeecCCCcceEechhh-Ee-ecccCE
Confidence 688888866666666655444 36888888752 22332222 34888999999765554432222 22 578999
Q ss_pred EEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEee
Q 003957 581 LAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHL 660 (784)
Q Consensus 581 L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L 660 (784)
+.+..+....... ....|++|+.+.+.. + ++..+-..+ .+ .+|+.+.+.++- .. .......+|++|+.+.+
T Consensus 208 l~lp~~l~~I~~~-aF~~~~~L~~l~l~~--~-l~~I~~~aF-~~-~~L~~i~lp~~i-~~--I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 208 VLLPVTLKEIGSQ-AFLKTSQLKTIEIPE--N-VSTIGQEAF-RE-SGITTVKLPNGV-TN--IASRAFYYCPELAEVTT 278 (401)
T ss_dssp EECCTTCCEECTT-TTTTCTTCCCEECCT--T-CCEECTTTT-TT-CCCSEEEEETTC-CE--ECTTTTTTCTTCCEEEE
T ss_pred EEeCCchheehhh-HhhCCCCCCEEecCC--C-ccCcccccc-cc-CCccEEEeCCCc-cE--EChhHhhCCCCCCEEEe
Confidence 9998764322222 234678999999976 2 332222222 23 489999996632 11 11223467999999999
Q ss_pred cCCCCC----CHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCC
Q 003957 661 EECGDI----TAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLS 734 (784)
Q Consensus 661 ~~c~~i----~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~ 734 (784)
.++... ...+...|.+|++|+.+++..+ + . .....++.+|++|+.+.|..+ ++ .++. |.+| +|+
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i--~-~I~~~aF~~c~~L~~l~lp~~--l~---~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I--R-ILGQGLLGGNRKVTQLTIPAN--VT---QINFSAFNNT-GIK 348 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C--C-EECTTTTTTCCSCCEEEECTT--CC---EECTTSSSSS-CCC
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCCc-e--E-EEhhhhhcCCCCccEEEECcc--cc---EEcHHhCCCC-CCC
Confidence 886521 1234456678999999999854 2 3 444566889999999999653 32 2333 8899 999
Q ss_pred EEEecCCCC
Q 003957 735 TVKITKCKS 743 (784)
Q Consensus 735 ~L~is~C~~ 743 (784)
.+++.++..
T Consensus 349 ~l~l~~n~~ 357 (401)
T 4fdw_A 349 EVKVEGTTP 357 (401)
T ss_dssp EEEECCSSC
T ss_pred EEEEcCCCC
Confidence 999998863
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.84 E-value=8.5e-06 Score=77.49 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=67.7
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCce
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRL 709 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~ 709 (784)
+.++++++....- .. .-.++|+.|+|++|. ++...+..+.++++|+.|+|++|.+ . ......+..+++|+.
T Consensus 15 ~~l~~~~n~l~~i--P~---~~~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~-~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRLASV--PA---GIPTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKL--T-AIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCCSSC--CS---CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCCCcc--CC---CcCCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCC--C-ccChhHhCCcchhhE
Confidence 5667776654330 00 113667888887766 5544444566788888888888865 3 323334677888888
Q ss_pred eccccccccCCCCCccc--ccCCCCCCEEEecCCCCc
Q 003957 710 VSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 710 L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~ 744 (784)
|+|++|... .+|. +..+++|++|++++|+..
T Consensus 86 L~L~~N~l~----~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 86 LDLNDNHLK----SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSSCCC----CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EECCCCccc----eeCHHHhccccCCCEEEeCCCCcc
Confidence 888887665 3444 778888999999888754
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.83 E-value=1.3e-05 Score=76.25 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=77.8
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
..+.++++++....-. ..-.++|+.|++++|. ++......+.++++|++|++++|.+ . ......+..+++|
T Consensus 8 ~~~~l~~~~~~l~~~p-----~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l--~-~~~~~~~~~l~~L 78 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVP-----TGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQI--Q-SLPDGVFDKLTKL 78 (177)
T ss_dssp ETTEEECCSSCCSSCC-----TTCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC--C-CCCTTTTTTCTTC
T ss_pred CCCEEEecCCCCccCC-----CCCCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcc--e-EeChhHccCCCcc
Confidence 3567888877654411 1225789999999987 6544444566899999999999976 4 3334457889999
Q ss_pred ceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCc
Q 003957 708 RLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 708 ~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~ 744 (784)
+.|++++|... .+|. +..+++|++|++++|...
T Consensus 79 ~~L~l~~N~l~----~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 79 TILYLHENKLQ----SLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp CEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCCcc----ccCHHHhhCCcccCEEECcCCcce
Confidence 99999998766 3454 788999999999999765
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.57 E-value=3.4e-05 Score=82.22 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=27.4
Q ss_pred CCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccc
Q 003957 652 WPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDA 717 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~ 717 (784)
+++|+.|+|++++.++......|.++++|+.|+|++|.+ . ...+..+.++++|+.|+|++|..
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l--~-~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL--R-FVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC--C-EECTTGGGSCSCCCEEECCSSCC
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcc--c-eeCHHHhcCCcCCCEEeCCCCcc
Confidence 344444444432223333333344455555555555533 2 22233344455555555554443
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.56 E-value=1.5e-05 Score=75.44 Aligned_cols=83 Identities=17% Similarity=0.100 Sum_probs=34.3
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
++|++|++++ +.++.... ..+.++++|++|++++|.+.. .......++++|+.|+|++|. ++......+.++++
T Consensus 30 ~~l~~L~L~~--N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYD--NQITKLEP-GVFDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKS 103 (170)
T ss_dssp TTCSEEECCS--SCCCCCCT-TTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCcEEEcCC--CcCCccCh-hhhcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCC
Confidence 4555555555 33432111 112234455555555554332 111111234455555555443 33222222334445
Q ss_pred CCEEEcccC
Q 003957 680 LEDLLLRHN 688 (784)
Q Consensus 680 L~~L~L~~n 688 (784)
|+.|+|++|
T Consensus 104 L~~L~L~~N 112 (170)
T 3g39_A 104 LTHIWLLNN 112 (170)
T ss_dssp CCEEECCSS
T ss_pred CCEEEeCCC
Confidence 555555554
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.54 E-value=0.00011 Score=79.80 Aligned_cols=302 Identities=13% Similarity=0.119 Sum_probs=136.3
Q ss_pred CccEEEecCC-CCCCHHHHHHHHHhCccccEEEecCC---cCchhhhhhcc-cCCcCEEEecCC--ccchhhHHHHHhcC
Q 003957 387 NLQMLHMACC-NGVDGMYLLELMCQARKLKSLCLSGT---QLADKALYNFS-GSSLEMLDVSDT--MISGAALAYMVHGN 459 (784)
Q Consensus 387 ~L~~L~L~~c-~~l~~~~l~~l~~~~~~L~~L~Ls~~---~l~~~~~~~l~-~~~L~~L~Ls~~--~i~~~~l~~~~~~l 459 (784)
.|+.+.+... ..+.+.+ +.+|++|+.+.+..+ .++..+..+|. +.+|+.+.+..+ .+... .+.+|
T Consensus 65 ~L~sI~iP~svt~Ig~~A----F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~----aF~~c 136 (394)
T 4gt6_A 65 VLTSVQIPDTVTEIGSNA----FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSE----AFHHC 136 (394)
T ss_dssp CCCEEEECTTCCEECTTT----TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTT----TTTTC
T ss_pred cCEEEEECCCeeEEhHHH----hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhh----hhhhh
Confidence 4777777542 2222222 267788888877654 35556666665 566776666543 22222 12567
Q ss_pred CCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCC-CC
Q 003957 460 SGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGG-SL 538 (784)
Q Consensus 460 ~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~l 538 (784)
.+|+.+.+... +...+-. .+..+..|+.+.+......+...++. ..+|+.+.+...- .+
T Consensus 137 ~~L~~i~lp~~--~~~I~~~----------------~F~~c~~L~~i~~~~~~~~I~~~aF~--~~~l~~i~ip~~~~~i 196 (394)
T 4gt6_A 137 EELDTVTIPEG--VTSVADG----------------MFSYCYSLHTVTLPDSVTAIEERAFT--GTALTQIHIPAKVTRI 196 (394)
T ss_dssp TTCCEEECCTT--CCEECTT----------------TTTTCTTCCEEECCTTCCEECTTTTT--TCCCSEEEECTTCCEE
T ss_pred cccccccccce--eeeeccc----------------ceecccccccccccceeeEecccccc--ccceeEEEECCccccc
Confidence 77777777432 1111110 23345556666664444433333321 2346666554321 11
Q ss_pred ChHHHHHhhccCCCCcEEEeeeeccChH--HH-H---------HHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEE
Q 003957 539 GEDALRLLPTTCPMLELVVLYFQVMSDS--II-I---------NILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLK 606 (784)
Q Consensus 539 ~~~~l~~l~~~~~~L~~L~L~~~~i~~~--~l-~---------~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~ 606 (784)
.... . ..|..++............ .+ . ........+..+.+......... .....|.+|+.+.
T Consensus 197 ~~~a---f-~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~-~aF~~c~~L~~i~ 271 (394)
T 4gt6_A 197 GTNA---F-SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIET-HAFDSCAYLASVK 271 (394)
T ss_dssp CTTT---T-TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECT-TTTTTCSSCCEEE
T ss_pred ccch---h-hhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEccc-ceeeecccccEEe
Confidence 1111 1 2244555444321110000 00 0 00001112223333222100000 1123456666666
Q ss_pred ccCCCCCCChHHHHHHHhcCCCCcEEEecCCC-CCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEc
Q 003957 607 LERVTPWMTNNDLVILTQNCSELVELSLVGCT-LLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLL 685 (784)
Q Consensus 607 L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~-~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L 685 (784)
+... +...+- ..+.+|++|+.+.+...- .+. .....+|.+|+.+.|... ++..+-..|.+|.+|+.+.|
T Consensus 272 lp~~---~~~I~~-~aF~~c~~L~~i~l~~~i~~I~----~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 272 MPDS---VVSIGT-GAFMNCPALQDIEFSSRITELP----ESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp CCTT---CCEECT-TTTTTCTTCCEEECCTTCCEEC----TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEE
T ss_pred cccc---cceecC-cccccccccccccCCCcccccC----ceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEE
Confidence 6541 111111 123456677777775421 111 123345777777777542 44444455667777777777
Q ss_pred ccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEecC
Q 003957 686 RHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITK 740 (784)
Q Consensus 686 ~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~ 740 (784)
..+ +. .....++.+|++|+.+.+.++... ...+..+.+|+.+.+..
T Consensus 342 p~s---v~-~I~~~aF~~C~~L~~i~~~~~~~~-----~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 342 PSS---VT-KIPESAFSNCTALNNIEYSGSRSQ-----WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp CTT---CC-BCCGGGGTTCTTCCEEEESSCHHH-----HHTCBCCCCC-------
T ss_pred Ccc---cC-EEhHhHhhCCCCCCEEEECCceee-----hhhhhccCCCCEEEeCC
Confidence 654 12 333445777777777777664322 12255566777766643
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.53 E-value=1.7e-05 Score=75.31 Aligned_cols=64 Identities=17% Similarity=0.022 Sum_probs=30.8
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
++++|+.|+|++|. ++......+.++++|+.|+|++|.+ . ......+..+++|+.|++++|+..
T Consensus 55 ~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l--~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 55 HLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHL--K-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCcc--c-eeCHHHhccccCCCEEEeCCCCcc
Confidence 34555555555543 3322222234555666666666544 2 222223555566666666655544
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.47 E-value=0.0001 Score=80.10 Aligned_cols=286 Identities=14% Similarity=0.185 Sum_probs=167.9
Q ss_pred HhC-ccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCc---cchhhHHHHHhcCCCccEEeccCCCcccccccccccc
Q 003957 409 CQA-RKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTM---ISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGI 483 (784)
Q Consensus 409 ~~~-~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~---i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~ 483 (784)
.++ ..|+++.+..+ ++..+..+|. +.+|+.+.+..+. ++..+-.++ .+|.+|+.+.+.. .++..+-.
T Consensus 60 ~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c~~L~~i~~~~--~~~~I~~~---- 131 (394)
T 4gt6_A 60 CNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-MFCSELTDIPILD--SVTEIDSE---- 131 (394)
T ss_dssp TTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT-TTCTTCCBCGGGT--TCSEECTT----
T ss_pred cCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhc-hhcccceeeccCC--ccceehhh----
Confidence 344 45888888764 6666777776 6889999887652 433332222 5677777666532 22222211
Q ss_pred ccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCC-CCCChHHHHHhhccCCCCcEEEee--e
Q 003957 484 EFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLG-GSLGEDALRLLPTTCPMLELVVLY--F 560 (784)
Q Consensus 484 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~-~~l~~~~l~~l~~~~~~L~~L~L~--~ 560 (784)
.+..+.+|+.+.+......+... .+..+.+|+.+.+... ..+.+..+ .+..|+.+.+. .
T Consensus 132 ------------aF~~c~~L~~i~lp~~~~~I~~~-~F~~c~~L~~i~~~~~~~~I~~~aF-----~~~~l~~i~ip~~~ 193 (394)
T 4gt6_A 132 ------------AFHHCEELDTVTIPEGVTSVADG-MFSYCYSLHTVTLPDSVTAIEERAF-----TGTALTQIHIPAKV 193 (394)
T ss_dssp ------------TTTTCTTCCEEECCTTCCEECTT-TTTTCTTCCEEECCTTCCEECTTTT-----TTCCCSEEEECTTC
T ss_pred ------------hhhhhcccccccccceeeeeccc-ceecccccccccccceeeEeccccc-----cccceeEEEECCcc
Confidence 44567788888886554444333 3556778888887654 22333222 23568888873 2
Q ss_pred eccChHHHHHHHhhCCCCcEEEecccCC---hhHHH--------Hh--hcCCCCccEEEccCCCCCCChHHHHHHHhcCC
Q 003957 561 QVMSDSIIINILESLRRLQVLAICHCLG---DLSIS--------SF--KLPLPNLRKLKLERVTPWMTNNDLVILTQNCS 627 (784)
Q Consensus 561 ~~i~~~~l~~~~~~l~~L~~L~Ls~c~~---~~~~~--------~l--~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~ 627 (784)
..+... .+.+|.+++......... +.... .+ ......+..+.+.. .++..+ ...+.+|.
T Consensus 194 ~~i~~~----af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~---~v~~i~-~~aF~~c~ 265 (394)
T 4gt6_A 194 TRIGTN----AFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN---GVARIE-THAFDSCA 265 (394)
T ss_dssp CEECTT----TTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT---TEEEEC-TTTTTTCS
T ss_pred cccccc----hhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC---cceEcc-cceeeecc
Confidence 333322 355677777776543310 00000 00 00112333333322 111111 12345788
Q ss_pred CCcEEEecCCCC-CChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCC
Q 003957 628 ELVELSLVGCTL-LSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706 (784)
Q Consensus 628 ~L~~L~Ls~c~~-~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~ 706 (784)
.|+.+.+.+... +. .....+|+.|+.+.+.. .++..+-..|.+|++|+.++|..+ +. .....++.+|.+
T Consensus 266 ~L~~i~lp~~~~~I~----~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~---v~-~I~~~aF~~C~~ 335 (394)
T 4gt6_A 266 YLASVKMPDSVVSIG----TGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG---IT-QILDDAFAGCEQ 335 (394)
T ss_dssp SCCEEECCTTCCEEC----TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT---CC-EECTTTTTTCTT
T ss_pred cccEEecccccceec----CcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc---cc-EehHhHhhCCCC
Confidence 999999976432 11 12335689999999964 365555566779999999999874 23 444567889999
Q ss_pred CceeccccccccCCCCCccc--ccCCCCCCEEEecCCCC
Q 003957 707 LRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKS 743 (784)
Q Consensus 707 L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~ 743 (784)
|+.+.|... ++ .+.. |.+|++|+.+++.+...
T Consensus 336 L~~i~ip~s--v~---~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 336 LERIAIPSS--VT---KIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCEEEECTT--CC---BCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCEEEECcc--cC---EEhHhHhhCCCCCCEEEECCcee
Confidence 999999643 32 2333 99999999999988653
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.01 E-value=0.001 Score=67.29 Aligned_cols=87 Identities=24% Similarity=0.265 Sum_probs=55.4
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHH-HHHHhhCCCCCCEEEcccCCCCCCh------
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAY-GVTSLFNCIALEDLLLRHNGPGIPR------ 694 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~-~~~~l~~~~~L~~L~L~~n~~gl~~------ 694 (784)
...++++|+.|+|++|.+..-..+......+++|+.|+|++|. ++.. .+..+..+ +|++|+|++|.+ ..
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l-~L~~L~L~~Npl--~~~~~~~~ 240 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGL-KLEELWLDGNSL--CDTFRDQS 240 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTS-CCSEEECTTSTT--GGGCSSHH
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccC-CcceEEccCCcC--ccccCcch
Confidence 3356788888888888776522222333468888888888876 4432 33333344 888888888865 31
Q ss_pred hHHHHHHhcCCCCceecc
Q 003957 695 DFILDAASKMPMLRLVSL 712 (784)
Q Consensus 695 ~~~~~~l~~l~~L~~L~L 712 (784)
......+..+|+|+.|+=
T Consensus 241 ~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHCTTCCEESS
T ss_pred hHHHHHHHHCcccCeECC
Confidence 112345777888888763
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.00 E-value=0.00099 Score=67.37 Aligned_cols=85 Identities=20% Similarity=0.168 Sum_probs=65.0
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchh-hhhhcccCCcCEEEecCCccch------hhHHHH
Q 003957 383 TLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADK-ALYNFSGSSLEMLDVSDTMISG------AALAYM 455 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~-~~~~l~~~~L~~L~Ls~~~i~~------~~l~~~ 455 (784)
..+++|+.|+|++|..-.-..++.+...+++|+.|+|++|.+++. .+..+...+|++|+|++|.+.. .-...+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 568999999999997644334444557899999999999998876 3444443499999999998764 223456
Q ss_pred HhcCCCccEEec
Q 003957 456 VHGNSGLKYLNA 467 (784)
Q Consensus 456 ~~~l~~L~~L~L 467 (784)
+..+|+|+.|+-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 688999999974
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.93 E-value=0.00039 Score=73.89 Aligned_cols=90 Identities=21% Similarity=0.152 Sum_probs=65.4
Q ss_pred cchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHH
Q 003957 378 KRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMV 456 (784)
Q Consensus 378 ~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~ 456 (784)
+|. +..+++|+.|+|++++.++.... ..+..+++|+.|+|++|.++......|. .++|++|+|++|.++..... .+
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~ 100 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK-TV 100 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST-TT
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH-Hc
Confidence 666 67888999999997333332111 1236899999999999999887777776 68999999999988754322 22
Q ss_pred hcCCCccEEeccCCC
Q 003957 457 HGNSGLKYLNARGCK 471 (784)
Q Consensus 457 ~~l~~L~~L~L~~c~ 471 (784)
..++ |+.|++.++.
T Consensus 101 ~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLS-LQELVLSGNP 114 (347)
T ss_dssp CSCC-CCEEECCSSC
T ss_pred ccCC-ceEEEeeCCC
Confidence 3334 9999998763
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.44 E-value=0.0088 Score=64.13 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=25.5
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecc
Q 003957 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSL 712 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L 712 (784)
+|++|+.+.+.++. ++..+...|.+|++|+.++|..+ +. .....++.+|++|+.+.+
T Consensus 284 ~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~---l~-~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 284 GCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA---LK-TIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT---CC-EECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccc-cceehhhhhcCCCCCCEEEcCcc---cc-EEHHHHhhCCCCCCEEEE
Confidence 45555555554432 33333334445555555555432 11 222233445555555554
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.70 E-value=0.0059 Score=65.48 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=82.5
Q ss_pred CCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCC-CCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhC
Q 003957 598 PLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCT-LLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFN 676 (784)
Q Consensus 598 ~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~-~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~ 676 (784)
.+.+|+.+.+..- ++..+- ..+.+|..|+.+.+..+- .+. .....+|.+|+.+.+.. .++..+...+.+
T Consensus 215 ~~~~l~~i~~~~~---~~~i~~-~~f~~~~~L~~i~lp~~v~~I~----~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~ 284 (379)
T 4h09_A 215 YGKNLKKITITSG---VTTLGD-GAFYGMKALDEIAIPKNVTSIG----SFLLQNCTALKTLNFYA--KVKTVPYLLCSG 284 (379)
T ss_dssp TCSSCSEEECCTT---CCEECT-TTTTTCSSCCEEEECTTCCEEC----TTTTTTCTTCCEEEECC--CCSEECTTTTTT
T ss_pred cccccceeeeccc---eeEEcc-ccccCCccceEEEcCCCccEeC----ccccceeehhccccccc--cceecccccccc
Confidence 3467777777541 222111 123467889998887641 111 12335688899998865 255555556678
Q ss_pred CCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCC
Q 003957 677 CIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKC 741 (784)
Q Consensus 677 ~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C 741 (784)
|++|+.+.+..+.+ . .....++.+|.+|+.+.|... ++ .+.. |.+|++|+++.|...
T Consensus 285 c~~L~~i~l~~~~i--~-~I~~~aF~~c~~L~~i~lp~~--l~---~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDNSAI--E-TLEPRVFMDCVKLSSVTLPTA--LK---TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECCTTC--C-EECTTTTTTCTTCCEEECCTT--CC---EECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccc--c-eehhhhhcCCCCCCEEEcCcc--cc---EEHHHHhhCCCCCCEEEECCc
Confidence 99999999988754 3 334556889999999999642 32 2333 899999999998543
No 163
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=94.09 E-value=0.016 Score=59.21 Aligned_cols=70 Identities=23% Similarity=0.410 Sum_probs=59.3
Q ss_pred ccccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhheeeeeeheeccc
Q 003957 3 AMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRISILPLWFAAG 77 (784)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (784)
+..+..|.++|.+.+...++++.|.|.+|..+-+|++.|++.+.+.-+ ..--.+++.||+.++|.++...
T Consensus 174 v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~~~~r~-----~~~~~ll~~VRf~l~~~~~L~~ 243 (279)
T 3i3n_A 174 VIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERE-----RYFEELFKLLRLSQMKPTYLTR 243 (279)
T ss_dssp HTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTHHHHT-----TTHHHHHTTSCGGGSCHHHHHH
T ss_pred HhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCHHHHH-----HHHHHHHHhcCCCCCCHHHHHH
Confidence 346778999999999999999999999999999999999998765321 2245689999999999988764
No 164
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=93.35 E-value=0.0074 Score=60.86 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=49.4
Q ss_pred cccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhheeeeeeheeccc
Q 003957 4 MSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRISILPLWFAAG 77 (784)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (784)
..+..|.++|.+.+...+++++|.|.+|..+-+|++.|++.+.+. ..+.--.+++.||+.++|-++...
T Consensus 167 ~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~-----R~~~~~~ll~~VRf~~l~~~~l~~ 235 (256)
T 3hve_A 167 SSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEI-----RKVHMKDVMSALWVSGLDSSYLRE 235 (256)
T ss_dssp TTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CC-----STTTHHHHHHHHHHHTTCC-CHHH
T ss_pred hCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHH-----HHHHHHHHHHhCCCCCCCHHHHHH
Confidence 456789999999999999999999999999999999999887532 223345799999999999988775
No 165
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.34 E-value=0.39 Score=40.57 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=44.4
Q ss_pred cccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhhee
Q 003957 4 MSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRI 67 (784)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (784)
..+..|-++|++.|...+.+. |.+|..+-+|++.|+..+++.-. ..-..+|+.||+
T Consensus 44 ~~~~eFl~L~~~~L~~lL~sd---v~~E~~vf~av~~Wv~~d~~~R~-----~~~~~Ll~~VR~ 99 (105)
T 2eqx_A 44 QNTEEFLHLPHRLLTDIISDG---VPCSQNPTEAIEAWINFNKEERE-----AFAESLRTSLKE 99 (105)
T ss_dssp HTSHHHHHSCHHHHHHHHHTC---EETTSCHHHHHHHHHHTTHHHHH-----HHHHHHHHHCCE
T ss_pred HhcccHhhCCHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCHHHHH-----HHHHHHHHHHHH
Confidence 456779999999999999996 99999999999999988865321 234567777764
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=66.62 E-value=1.9 Score=37.77 Aligned_cols=35 Identities=26% Similarity=0.063 Sum_probs=16.9
Q ss_pred CCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCC
Q 003957 654 GLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNG 689 (784)
Q Consensus 654 ~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~ 689 (784)
+|+.|+|++|. ++......|..+++|+.|+|++|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 45555555544 333333333445555555555543
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=63.65 E-value=5.2 Score=34.93 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=20.9
Q ss_pred CCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 679 ALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 679 ~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+|+.|+|++|.+ . ......+..+++|+.|.|++|+..
T Consensus 32 ~l~~L~Ls~N~l--~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNL--T-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCC--S-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcC--C-ccChhhhhhccccCEEEecCCCee
Confidence 566777776654 2 222333555666666666665544
Done!